BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013778
(436 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224077862|ref|XP_002305441.1| predicted protein [Populus trichocarpa]
gi|222848405|gb|EEE85952.1| predicted protein [Populus trichocarpa]
Length = 518
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/434 (83%), Positives = 395/434 (91%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG +LFPVQ+AVWQETIGPG FERDLCINSPTGSGKTL+YALPIVQ LS RAV+CLRAL
Sbjct: 50 MGFKTLFPVQIAVWQETIGPGAFERDLCINSPTGSGKTLAYALPIVQLLSTRAVKCLRAL 109
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK VFAAIAPA+GLSVGLAVGQSSIADEISELIK+P+ EAGICYDP+DV
Sbjct: 110 VVLPTRDLALQVKQVFAAIAPAMGLSVGLAVGQSSIADEISELIKKPEHEAGICYDPQDV 169
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
LQELQS+VDILVATPGRLMDHI T+GFTLEHLCYLVVDETDRLLRE+YQ+WLPTVL+LT
Sbjct: 170 LQELQSSVDILVATPGRLMDHITTTKGFTLEHLCYLVVDETDRLLRESYQSWLPTVLKLT 229
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
R +E+ + FLP A GSLKTIRRCGVERGFK K YPRL KMVLSATLTQDP+KLAQ
Sbjct: 230 RPYDESLVPGVNNFLPCASGSLKTIRRCGVERGFKGKSYPRLAKMVLSATLTQDPSKLAQ 289
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L+LHHPLFLTTG+ RY+LPE+LESYKLIC SKLKPLYLVA+LQ LG EKCIVFTSSVEST
Sbjct: 290 LNLHHPLFLTTGQRRYQLPEKLESYKLICVSKLKPLYLVAVLQHLGGEKCIVFTSSVEST 349
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
HRLCTLLN FG+L++KIKEYSGLQRQSVRSKTLKAFREG+IQVLVSSDAMTRGMD+EGV
Sbjct: 350 HRLCTLLNFFGDLKVKIKEYSGLQRQSVRSKTLKAFREGEIQVLVSSDAMTRGMDIEGVR 409
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
N++NYD PAY+KTY+HRAGRTARAGQ GRC TLL EVKRFKKLLQKADNDSCPI+SIP
Sbjct: 410 NIINYDMPAYVKTYVHRAGRTARAGQTGRCITLLRTHEVKRFKKLLQKADNDSCPIYSIP 469
Query: 421 SSLIESLRPVYKSG 434
SS ++SL P Y S
Sbjct: 470 SSSVKSLHPFYLSA 483
>gi|449433605|ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus]
gi|449490565|ref|XP_004158642.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus]
Length = 517
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/434 (83%), Positives = 394/434 (90%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGISSLFPVQ+AVWQE IGPG F+RDLCINSPTGSGKTL+YALPIVQ LS+R V+CLRAL
Sbjct: 47 MGISSLFPVQLAVWQEAIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRTVKCLRAL 106
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF+AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP+D
Sbjct: 107 VVLPTRDLALQVKEVFSAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPDDF 166
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
L ELQS+VDILVATPGRLMDHIN T+GFTL+HL YLV+DETDRLLREAYQ+WLPTVLQLT
Sbjct: 167 LVELQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLT 226
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
+D+ + + P + GSLKTIRR GVERGFK KPYPRL KMVLSATLTQDP KLAQ
Sbjct: 227 HADDSSIIFPSYISNPCSDGSLKTIRRFGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQ 286
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
LDLHHPLFLTTG+ RYKLPE+LESY +ICESKLKPLYLVALLQSLGEEKCIVFTSSVEST
Sbjct: 287 LDLHHPLFLTTGKRRYKLPEKLESYMMICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 346
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
HRLC+LLN F +L +KIKEYSGLQRQS+RSKTL AFR G+IQVLVSSDAMTRGMDVEGV
Sbjct: 347 HRLCSLLNFFEDLELKIKEYSGLQRQSLRSKTLNAFRGGEIQVLVSSDAMTRGMDVEGVK 406
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
NV+NYD PA+IKTYIHRAGRTARAGQ GRCFTLL KDEVKRFKKLLQKADNDSCP+H++P
Sbjct: 407 NVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLRKDEVKRFKKLLQKADNDSCPVHNLP 466
Query: 421 SSLIESLRPVYKSG 434
SS IE L+P Y S
Sbjct: 467 SSSIEFLQPTYVSA 480
>gi|225443938|ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera]
gi|297740757|emb|CBI30939.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/434 (81%), Positives = 389/434 (89%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG SSLFPVQVAVWQET+GPG FERDLCINSPTGSGKTL+YALPIV LS+RAV+CLRAL
Sbjct: 47 MGFSSLFPVQVAVWQETVGPGAFERDLCINSPTGSGKTLAYALPIVNVLSSRAVKCLRAL 106
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VFAAIAPAVGLSVGLAVGQ+SIADEISELIKRPKLEAGICYDPED+
Sbjct: 107 VVLPTRDLALQVKEVFAAIAPAVGLSVGLAVGQTSIADEISELIKRPKLEAGICYDPEDI 166
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
ELQS+VDILVATPGRLMDHIN T+GFTL+HL YLVVDETDRLLREAYQ+WLPTVLQLT
Sbjct: 167 SLELQSSVDILVATPGRLMDHINTTKGFTLKHLRYLVVDETDRLLREAYQSWLPTVLQLT 226
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
RS +E+ F T LPS FGS+ TIRRCGVERGFK + YPRLVK+VLSATLTQDP+KLA
Sbjct: 227 RSSDESLFPCGKTILPSTFGSMNTIRRCGVERGFKGRSYPRLVKIVLSATLTQDPSKLAL 286
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
LDLHHPL LT G+ RY+LPE+L+S+KLICESKLKPLYLVALL+ LG EKCIVFTSSVES
Sbjct: 287 LDLHHPLLLTAGQRRYQLPEKLKSFKLICESKLKPLYLVALLRDLGGEKCIVFTSSVESA 346
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
HRLCTLLN FG+L+IKI EYSGLQ Q VRSKTL+ FR GKIQVL+SSD MTRGMDVEGV
Sbjct: 347 HRLCTLLNFFGDLQIKIGEYSGLQHQRVRSKTLEEFRGGKIQVLISSDGMTRGMDVEGVR 406
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
NV+NYD P +IKTYIHRAGRTARAGQ GRCFTLL KDE KRFK+LLQKAD+DSCP+HS+
Sbjct: 407 NVINYDVPKFIKTYIHRAGRTARAGQTGRCFTLLRKDEDKRFKQLLQKADSDSCPVHSVA 466
Query: 421 SSLIESLRPVYKSG 434
S+ IE+L VY S
Sbjct: 467 SNSIEALHSVYVSA 480
>gi|297804642|ref|XP_002870205.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
lyrata]
gi|297316041|gb|EFH46464.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
lyrata]
Length = 522
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/431 (75%), Positives = 373/431 (86%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRAL
Sbjct: 49 MGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQILASRPVRCLRAL 108
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVKDVF AIAP VGLSVG AVGQSSIA EIS+LIK PKL+AGICYDPED+
Sbjct: 109 VVLPTRDLALQVKDVFDAIAPTVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPEDL 168
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
Q +SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT
Sbjct: 169 SQNFESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLT 228
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
++ ++ F + F+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL Q
Sbjct: 229 QTSDDGLFPSCTPFVPSAFGSLRTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQ 288
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
LDLHHPLF+TTG +RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T
Sbjct: 289 LDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETT 348
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RLC LLN FG+ +IK KEYSG QSVRSK LKAFR+G IQVLV+SDA+TRGMDV+GV
Sbjct: 349 RRLCKLLNFFGDPKIKAKEYSGGLNQSVRSKELKAFRKGDIQVLVASDALTRGMDVKGVT 408
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
NV+NYD P + KT+IHRAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP
Sbjct: 409 NVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLKKVGSDSCPIYPIP 468
Query: 421 SSLIESLRPVY 431
+ ++S+R Y
Sbjct: 469 PTSLDSIRATY 479
>gi|5281020|emb|CAB45993.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana]
gi|7268333|emb|CAB78627.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana]
Length = 474
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/431 (75%), Positives = 376/431 (87%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRAL
Sbjct: 1 MGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRAL 60
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+
Sbjct: 61 VVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDL 120
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT
Sbjct: 121 SQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLT 180
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
++ +++ F + F+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL Q
Sbjct: 181 QTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQ 240
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
LDLHHPLF+TTG +RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T
Sbjct: 241 LDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETT 300
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RLC LLN FG+ +IK KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV
Sbjct: 301 RRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVT 360
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
NV+NYD P + KT+IHRAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP
Sbjct: 361 NVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIP 420
Query: 421 SSLIESLRPVY 431
+ ++S+R Y
Sbjct: 421 PTSLDSIRATY 431
>gi|240255886|ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana]
gi|334302879|sp|Q7FGZ2.3|RH1_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 1
gi|332658259|gb|AEE83659.1| RNA helicase 1 [Arabidopsis thaliana]
Length = 522
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/431 (75%), Positives = 376/431 (87%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRAL
Sbjct: 49 MGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRAL 108
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+
Sbjct: 109 VVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDL 168
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT
Sbjct: 169 SQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLT 228
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
++ +++ F + F+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL Q
Sbjct: 229 QTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQ 288
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
LDLHHPLF+TTG +RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T
Sbjct: 289 LDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETT 348
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RLC LLN FG+ +IK KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV
Sbjct: 349 RRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVT 408
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
NV+NYD P + KT+IHRAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP
Sbjct: 409 NVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIP 468
Query: 421 SSLIESLRPVY 431
+ ++S+R Y
Sbjct: 469 PTSLDSIRATY 479
>gi|357491905|ref|XP_003616240.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355517575|gb|AES99198.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 497
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/435 (71%), Positives = 361/435 (82%), Gaps = 1/435 (0%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGIS+LFPVQVAVW ET+GPG FERD+C+NSPTGSGKTL+YALP+VQ LS R +CLRAL
Sbjct: 46 MGISNLFPVQVAVWHETVGPGNFERDICVNSPTGSGKTLAYALPLVQMLSGRVTKCLRAL 105
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VV+PTRDLALQVK VF A+A +GL VGLAVGQSS+ADEISEL++ P + G CYDP +
Sbjct: 106 VVVPTRDLALQVKQVFDAVASPLGLRVGLAVGQSSLADEISELVEMPARDIGTCYDPHCI 165
Query: 121 -LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L QS VDILVATPGRLMDHIN T GFTLEHL YLVVDETDRLLREAYQ+WLPTVL+L
Sbjct: 166 SLPRFQSKVDILVATPGRLMDHINTTIGFTLEHLYYLVVDETDRLLREAYQSWLPTVLEL 225
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+S+++ +++F P + +L+T RRCGVERGFKDKPYPRL KMVLSATLTQDP +L
Sbjct: 226 IQSNDDGFSLPSASFFPCSASALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLI 285
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
QL+LHHPL L G+ RY+LPE LESYKLICE K+KPLYL+ALL+SLGEEKC+VFT SV+S
Sbjct: 286 QLNLHHPLLLKAGQMRYRLPENLESYKLICEKKVKPLYLIALLKSLGEEKCLVFTKSVDS 345
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
THRLC LLN F +LRI IKEYS LQ Q VRSKTL FR+G QVL+SSDA+TRGMDVEGV
Sbjct: 346 THRLCQLLNCFEDLRIDIKEYSSLQHQRVRSKTLNEFRKGVFQVLLSSDALTRGMDVEGV 405
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
NV+NYD P +IKT++HRAGRTARAGQ GRCFTL+ +DEV+RFKKL+ KA+ SC H +
Sbjct: 406 RNVINYDVPKFIKTHVHRAGRTARAGQTGRCFTLMSEDEVRRFKKLIGKAEGGSCLDHIV 465
Query: 420 PSSLIESLRPVYKSG 434
PSS IE+L Y+S
Sbjct: 466 PSSQIEALNTTYESA 480
>gi|255584180|ref|XP_002532829.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223527420|gb|EEF29559.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 469
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 324/444 (72%), Positives = 365/444 (82%), Gaps = 35/444 (7%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG +SLF VQVAVWQETIGPG FERDLCIN+PTGSGKTL+YALPI+Q LS R+++CLRAL
Sbjct: 48 MGFTSLFAVQVAVWQETIGPGNFERDLCINAPTGSGKTLAYALPIIQMLSTRSIKCLRAL 107
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
+VLPTRDLALQVK VFAA+APAVGLSVGLAVGQSSIA EISELIKRPKLEAGICYD +DV
Sbjct: 108 IVLPTRDLALQVKQVFAALAPAVGLSVGLAVGQSSIAGEISELIKRPKLEAGICYDRDDV 167
Query: 121 --LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+QELQ++VDILVATPGRLMDHI T+GFTLEHLCYL + ++
Sbjct: 168 ILMQELQTSVDILVATPGRLMDHITNTKGFTLEHLCYLHLLDS----------------- 210
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LTRS RF LP ++ VERGFK K YPRL KMVLSATLTQDP+KL
Sbjct: 211 LTRSTLLLRF------LPIII----VLKDSSVERGFKGKSYPRLAKMVLSATLTQDPSKL 260
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
QLDLHHPLFLTTG++RY+LPE+LESY++ICE KLKPLYLVALLQ+L EKCIVF SSVE
Sbjct: 261 VQLDLHHPLFLTTGQSRYQLPEKLESYRVICEPKLKPLYLVALLQNLVGEKCIVFASSVE 320
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
STHRLCTLL FG+L++KIKEYSGLQ QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG
Sbjct: 321 STHRLCTLLKFFGDLKVKIKEYSGLQHQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 380
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418
V NV+NYDKPAYIKTYIHRAGRTARAGQ+GRCFTLLHK+EV+ F+KLLQKADNDS P++S
Sbjct: 381 VRNVINYDKPAYIKTYIHRAGRTARAGQVGRCFTLLHKEEVRHFRKLLQKADNDSFPVYS 440
Query: 419 IPS------SLIESLRPVYKSGDV 436
+P +L+ S P + SG V
Sbjct: 441 LPPVTLSLFTLLMSQIPGWGSGTV 464
>gi|3445416|emb|CAA72041.1| DEAD box-like RNA helicase [Arabidopsis thaliana]
Length = 450
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/407 (74%), Positives = 352/407 (86%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF AIAPAVG
Sbjct: 1 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 60
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
LSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPGRLMDHIN
Sbjct: 61 LSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINN 120
Query: 145 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 204
T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F+PSAFGSL+T
Sbjct: 121 TKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQT 180
Query: 205 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 264
+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY+LPE+LE
Sbjct: 181 VRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLEC 240
Query: 265 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 324
+LICE+ +KP+YL ALL+S EKCI+FTSS E+T RLC LLN FG+ +IK KEYSG
Sbjct: 241 LRLICETGMKPVYLGALLKSWEGEKCIIFTSSGETTRRLCKLLNFFGDPKIKAKEYSGGL 300
Query: 325 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+IHRAGRTARA
Sbjct: 301 NQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARA 360
Query: 385 GQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 431
GQ GRCFTLL EV+RF KLL+K +DSCPI+ IP + ++S+R Y
Sbjct: 361 GQAGRCFTLLSNHEVRRFSKLLKKVGSDSCPIYPIPPTSLDSIRATY 407
>gi|115449213|ref|NP_001048386.1| Os02g0795900 [Oryza sativa Japonica Group]
gi|122170850|sp|Q0DWT8.1|RH1_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 1
gi|113537917|dbj|BAF10300.1| Os02g0795900 [Oryza sativa Japonica Group]
gi|215740532|dbj|BAG97188.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 521
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/435 (66%), Positives = 344/435 (79%), Gaps = 3/435 (0%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRAL
Sbjct: 55 MGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRAL 114
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K D E +
Sbjct: 115 VVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYI 174
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLT
Sbjct: 175 QMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLT 234
Query: 181 RSDNENR-FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
RS ++N +SD + + L TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+
Sbjct: 235 RSSDQNHSWSDMNG--ETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLS 292
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
QL+L HPL L +G+ RY++P +L+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES
Sbjct: 293 QLELQHPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVES 352
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+HRL TLL F +L K EYS LQR+S R KTL AF+EGKI VL+ +D M RG+ ++G+
Sbjct: 353 SHRLSTLLEFFEDLPFKFSEYSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGL 412
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +HS+
Sbjct: 413 RYVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSL 472
Query: 420 PSSLIESLRPVYKSG 434
P +E+LRPV+ S
Sbjct: 473 PEESVETLRPVFSSA 487
>gi|47497023|dbj|BAD19076.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group]
gi|47497232|dbj|BAD19277.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group]
Length = 517
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/435 (66%), Positives = 344/435 (79%), Gaps = 3/435 (0%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRAL
Sbjct: 51 MGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRAL 110
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K D E +
Sbjct: 111 VVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYI 170
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLT
Sbjct: 171 QMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLT 230
Query: 181 RSDNENR-FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
RS ++N +SD + + L TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+
Sbjct: 231 RSSDQNHSWSDMNG--ETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLS 288
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
QL+L HPL L +G+ RY++P +L+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES
Sbjct: 289 QLELQHPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVES 348
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+HRL TLL F +L K EYS LQR+S R KTL AF+EGKI VL+ +D M RG+ ++G+
Sbjct: 349 SHRLSTLLEFFEDLPFKFSEYSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGL 408
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +HS+
Sbjct: 409 RYVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSL 468
Query: 420 PSSLIESLRPVYKSG 434
P +E+LRPV+ S
Sbjct: 469 PEESVETLRPVFSSA 483
>gi|242066828|ref|XP_002454703.1| hypothetical protein SORBIDRAFT_04g035895 [Sorghum bicolor]
gi|241934534|gb|EES07679.1| hypothetical protein SORBIDRAFT_04g035895 [Sorghum bicolor]
Length = 519
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 292/437 (66%), Positives = 338/437 (77%), Gaps = 7/437 (1%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S FPVQ A W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L R VRCLRAL
Sbjct: 54 MGIESFFPVQEAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLCKRKVRCLRAL 113
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S L+++PK E D E V
Sbjct: 114 VVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSRLVQKPKQEFYPTIDEEYV 173
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
E Q+ +DILVATPGRLMDHIN T GF+LEHL YLV+DETDR+LREAYQ+WLPTV+QLT
Sbjct: 174 QMEPQTKIDILVATPGRLMDHINMTNGFSLEHLQYLVIDETDRMLREAYQSWLPTVIQLT 233
Query: 181 RS---DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
S D+ D T L L TIRR GVERGFK K YPRL K+VLSATLTQDP+K
Sbjct: 234 HSIGQDHSWHDIDGKTLL----HPLTTIRRSGVERGFKGKCYPRLAKIVLSATLTQDPSK 289
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
L+QL+LHHPL L +G+ RY++P +LESYKLIC+S LKPL L+ LLQ L KC+VFTSSV
Sbjct: 290 LSQLELHHPLLLNSGKKRYRIPTKLESYKLICKSNLKPLSLIVLLQELQGNKCLVFTSSV 349
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
ES+HRL TLL F L K EYS LQR+S R KTL+AF+EGKI VL+ +D M RG+ ++
Sbjct: 350 ESSHRLSTLLCFFENLPFKFSEYSRLQRESTRRKTLEAFKEGKIDVLIGTDRMARGIHID 409
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 417
G+ V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +H
Sbjct: 410 GLRYVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKTFDKMLKKADNASCSLH 469
Query: 418 SIPSSLIESLRPVYKSG 434
S+P IE+LRP + S
Sbjct: 470 SLPEESIETLRPTFSSA 486
>gi|357137417|ref|XP_003570297.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Brachypodium
distachyon]
Length = 522
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/437 (66%), Positives = 338/437 (77%), Gaps = 7/437 (1%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S F VQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ LS R VRCLRAL
Sbjct: 56 MGIESFFSVQVATWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLSTRKVRCLRAL 115
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF AIAP VGLSV AVGQSSIADEIS+LIK+ K E D E V
Sbjct: 116 VVLPTRDLALQVKEVFDAIAPVVGLSVASAVGQSSIADEISDLIKKSKQELYATLDEEYV 175
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
E Q+ VDILVATPGRLMDHIN T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+Q T
Sbjct: 176 EMEPQTKVDILVATPGRLMDHINMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQFT 235
Query: 181 RSDNEN---RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
RS N+N R + T L L T RR GVERGFK K YPRL K+V SATLTQDP+K
Sbjct: 236 RSTNQNHPWRDTAGQTLL----HPLTTNRRSGVERGFKGKCYPRLAKIVCSATLTQDPSK 291
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
L+QL+LHHPL L +G+ RY++P +LESYKLIC + LKPL L+ LLQ L EKC+VFTSSV
Sbjct: 292 LSQLELHHPLLLNSGKKRYRIPTKLESYKLICTTNLKPLCLIVLLQELHGEKCLVFTSSV 351
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
ES+HRL TLL F +L K E+S LQR+S R KTL F+EGKI VL+ +D M RG+ ++
Sbjct: 352 ESSHRLSTLLGFFEDLPFKFSEFSRLQRESTRRKTLADFKEGKIDVLIGTDIMARGIHID 411
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 417
G+ V+NYD P Y+KTYIHRAGRTARAG+ G CFTLL K EVK F K+L+KAD+ SC +
Sbjct: 412 GLKYVINYDMPPYVKTYIHRAGRTARAGESGSCFTLLRKHEVKTFDKMLKKADDSSCSLR 471
Query: 418 SIPSSLIESLRPVYKSG 434
S+P IE+ RPV+ S
Sbjct: 472 SLPDESIETFRPVFSSA 488
>gi|413939310|gb|AFW73861.1| putative DEAD-box ATP-dependent RNA helicase family protein isoform
1 [Zea mays]
gi|413939311|gb|AFW73862.1| putative DEAD-box ATP-dependent RNA helicase family protein isoform
2 [Zea mays]
Length = 523
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 288/434 (66%), Positives = 336/434 (77%), Gaps = 7/434 (1%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S FPVQ A W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L R VRCLRAL
Sbjct: 54 MGIESFFPVQEAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLCTRKVRCLRAL 113
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S L+++P+ E D E V
Sbjct: 114 VVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSSLVQKPRQEFYPTIDKEYV 173
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
E ++ +DILVATPGRLMDHIN T GF+LEHL YLV+DETDR+LREAYQ+WLPTV+QLT
Sbjct: 174 QMEPRTKIDILVATPGRLMDHINMTNGFSLEHLQYLVIDETDRMLREAYQSWLPTVIQLT 233
Query: 181 RS---DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
S D+ D T L L TIRR GVERGFK K YPRL K+VLSATLTQDP+K
Sbjct: 234 HSIGQDHSCHDIDGKTLL----HPLTTIRRSGVERGFKSKCYPRLAKIVLSATLTQDPSK 289
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
L+QL+LHHPL L +G+ RY++P +LESYKLIC+S LKPL L+ LLQ L KC+VFTSSV
Sbjct: 290 LSQLELHHPLLLNSGKKRYRIPTKLESYKLICKSNLKPLSLIVLLQELQGNKCLVFTSSV 349
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
ES+HRL TLL F L K EYS LQR+S R KTL+AF+EGKI VL+ +D M RG+ ++
Sbjct: 350 ESSHRLSTLLRFFENLPFKFSEYSRLQRESTRRKTLEAFKEGKIDVLIGTDRMARGIHID 409
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 417
G+ V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN C +H
Sbjct: 410 GLRYVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKTFDKMLKKADNAGCNLH 469
Query: 418 SIPSSLIESLRPVY 431
S+P IE+LRP +
Sbjct: 470 SLPEESIETLRPAF 483
>gi|125541460|gb|EAY87855.1| hypothetical protein OsI_09277 [Oryza sativa Indica Group]
Length = 499
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/434 (64%), Positives = 334/434 (76%), Gaps = 19/434 (4%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRAL
Sbjct: 51 MGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRAL 110
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K D E +
Sbjct: 111 VVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYI 170
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLT
Sbjct: 171 QMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLT 230
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
RS ++N GVERGFK K +PRL K+VLSATLTQDP+KL+Q
Sbjct: 231 RSSDQNH-------------------SWGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQ 271
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L+L HPL L +G+ RY++P +L+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES+
Sbjct: 272 LELQHPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESS 331
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
HRL TLL F +L K EYS LQR+S R KTL AF+EGKI VL+ +D M RG+ ++G+
Sbjct: 332 HRLSTLLEFFEDLPFKFSEYSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLR 391
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +HS+P
Sbjct: 392 YVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLP 451
Query: 421 SSLIESLRPVYKSG 434
+E+LRPV+ S
Sbjct: 452 EESVETLRPVFSSA 465
>gi|125584003|gb|EAZ24934.1| hypothetical protein OsJ_08714 [Oryza sativa Japonica Group]
Length = 499
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/434 (64%), Positives = 334/434 (76%), Gaps = 19/434 (4%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRAL
Sbjct: 51 MGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRAL 110
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K D E +
Sbjct: 111 VVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYI 170
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLT
Sbjct: 171 QMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLT 230
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
RS ++N GVERGFK K +PRL K+VLSATLTQDP+KL+Q
Sbjct: 231 RSSDQNH-------------------SWGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQ 271
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L+L HPL L +G+ RY++P +L+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES+
Sbjct: 272 LELQHPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESS 331
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
HRL TLL F +L K EYS LQR+S R KTL AF+EGKI VL+ +D M RG+ ++G+
Sbjct: 332 HRLSTLLEFFEDLPFKFSEYSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLR 391
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +HS+P
Sbjct: 392 YVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLP 451
Query: 421 SSLIESLRPVYKSG 434
+E+LRPV+ S
Sbjct: 452 EESVETLRPVFSSA 465
>gi|356526389|ref|XP_003531800.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 617
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 278/436 (63%), Positives = 321/436 (73%), Gaps = 46/436 (10%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGIS LFPVQVA+WQET+GPG FERDLCINSPTGSGKTL+YALPIVQ L LRAL
Sbjct: 202 MGISKLFPVQVALWQETVGPGDFERDLCINSPTGSGKTLAYALPIVQNLFTNPGGRLRAL 261
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VV+PTRDLALQVK VF A+A +GL +GLA GQSS+ E+S LI P + G DP
Sbjct: 262 VVVPTRDLALQVKRVFDALASPLGLRIGLAAGQSSLRHELSSLIYLPGEDDGP--DP-GF 318
Query: 121 LQEL--QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L L QS VDILVATPGRL+DH+N +L+HL YLVVDE DRLLRE YQ+WLPTVL+
Sbjct: 319 LSPLWFQSKVDILVATPGRLVDHVNK---LSLKHLRYLVVDEADRLLREDYQSWLPTVLK 375
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LT+S RL K+VLSATLT+DP +L
Sbjct: 376 LTQS--------------------------------------RLAKIVLSATLTRDPGRL 397
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
AQL+LHHPLFL+ G+ RY+LPE LE YKLICE K+KPLYLVALL+SLGEEKCIVFT SVE
Sbjct: 398 AQLNLHHPLFLSAGKMRYRLPEYLECYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVE 457
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
STH LC LLN FG+L+I IKE+SGL+ Q VRSKT+ FR G+ QVLVSSDAMTRGMDVEG
Sbjct: 458 STHHLCKLLNCFGDLKIGIKEFSGLKHQRVRSKTVGEFRRGEFQVLVSSDAMTRGMDVEG 517
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418
V NV+NYD P Y KTY+HRAGRTARAGQ GRCFTL+ KDEV RFKKL++KA+ C ++
Sbjct: 518 VRNVINYDMPKYTKTYVHRAGRTARAGQTGRCFTLMSKDEVXRFKKLMKKAEASDCLEYT 577
Query: 419 IPSSLIESLRPVYKSG 434
+PSSLIE+L Y+S
Sbjct: 578 VPSSLIEALHSTYQSA 593
>gi|302794133|ref|XP_002978831.1| hypothetical protein SELMODRAFT_109199 [Selaginella moellendorffii]
gi|300153640|gb|EFJ20278.1| hypothetical protein SELMODRAFT_109199 [Selaginella moellendorffii]
Length = 513
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 256/437 (58%), Positives = 316/437 (72%), Gaps = 13/437 (2%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+GI SLFPVQ AVW ET+GPG RDL I+SPTGSGKTL+Y+LPI Q+LS +R LRAL
Sbjct: 42 VGIHSLFPVQAAVWHETVGPGGGARDLSISSPTGSGKTLAYSLPIAQSLSQCLLRRLRAL 101
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD---- 116
+V+PTRDLA+QVK VF AIAP+VGLSVG+AVGQ+S+A E S+L+ P + C+
Sbjct: 102 IVVPTRDLAMQVKQVFDAIAPSVGLSVGIAVGQTSVAAEASQLVLFPG-KIDTCFRELHL 160
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
D L E S VDILVATPGRLMDHI T GFTLEHL YLVVDETDRLLREAYQ WLPTV
Sbjct: 161 ASDNLAE--SRVDILVATPGRLMDHIQNTPGFTLEHLQYLVVDETDRLLREAYQEWLPTV 218
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
L+ + N FS + P GS++TIRR +ERG K PRL K+++SATLT+DP
Sbjct: 219 LEAASAKN---FSPSDDSNP-GIGSVRTIRRSCLERGIKGCVVPRLQKIIVSATLTRDPA 274
Query: 237 KLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
K+AQL L+HPL L+T + YKLPE+L SY +IC+++ KPL LV LL SLG+++ ++FT
Sbjct: 275 KIAQLRLYHPLSVALSTSDNLYKLPEQLRSYTIICKAQQKPLKLVTLLHSLGDQRTVIFT 334
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
SSV +THRL T L F +L + EYS Q Q RSK L AFR G+ QVLV+SDAM RGM
Sbjct: 335 SSVSNTHRLSTFLACFEDLPFRAVEYSSFQHQLARSKALAAFRAGEAQVLVASDAMARGM 394
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
DVEGV +++NYD P + +TY+HR GRTARAG+ G CFTLL K+EV+ FK +L K N SC
Sbjct: 395 DVEGVTHIINYDMPPFARTYVHRVGRTARAGRSGSCFTLLRKEEVRYFKSILAKVQNSSC 454
Query: 415 PIHSIPSSLIESLRPVY 431
+ + S + LRP Y
Sbjct: 455 KTYKVSSESTKELRPRY 471
>gi|302787757|ref|XP_002975648.1| hypothetical protein SELMODRAFT_174931 [Selaginella moellendorffii]
gi|300156649|gb|EFJ23277.1| hypothetical protein SELMODRAFT_174931 [Selaginella moellendorffii]
Length = 513
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 254/437 (58%), Positives = 316/437 (72%), Gaps = 13/437 (2%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+GI SLFPVQ AVW ET+GPG RDL I+SPTGSGKTL+Y+LPI Q+LS R +R LRAL
Sbjct: 42 VGIHSLFPVQAAVWHETVGPGGGARDLSISSPTGSGKTLAYSLPIAQSLSQRLLRRLRAL 101
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD---- 116
+V+PTRDLA+QVK VF AIAP+VGLS+G+AVGQ+S+A E S+L+ P + C+
Sbjct: 102 IVVPTRDLAMQVKQVFDAIAPSVGLSIGIAVGQTSVAAEASQLVLFPG-KTDTCFRELHL 160
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
D L E S VDILVATPGRLMDHI T GFTLEHL YLVVDETDRLLREAYQ WLPTV
Sbjct: 161 ASDNLPE--SRVDILVATPGRLMDHIQNTPGFTLEHLQYLVVDETDRLLREAYQEWLPTV 218
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
L+ N + D++ GS++TIRR +ERG K PRL K+++SATLT+DP
Sbjct: 219 LEAATGKNFSPSDDSN----PGIGSVRTIRRSCLERGIKGCVVPRLQKIIVSATLTRDPA 274
Query: 237 KLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
K+AQL L+HPL L+T + YKLPE+L SY +IC+++ KPL LV LL SLG+++ ++FT
Sbjct: 275 KIAQLGLYHPLSIALSTSDNLYKLPEQLRSYTIICKAQQKPLKLVTLLHSLGDQRTVIFT 334
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
SSV +THRL T L F +L + EYS Q Q RSK L AFR G+ QVLV+SDAM RGM
Sbjct: 335 SSVSNTHRLSTFLACFEDLPFRAVEYSSFQHQLARSKALAAFRAGEAQVLVASDAMARGM 394
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
DVEGV +++NYD P + +TY+HR GRTARAG+ G CFTLL K+EV+ FK +L K N SC
Sbjct: 395 DVEGVTHIINYDMPPFARTYVHRVGRTARAGRSGSCFTLLRKEEVRYFKSILAKVQNSSC 454
Query: 415 PIHSIPSSLIESLRPVY 431
+ + S + LRP Y
Sbjct: 455 KTYKVSSESTKELRPRY 471
>gi|356554249|ref|XP_003545461.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 492
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 251/436 (57%), Positives = 300/436 (68%), Gaps = 46/436 (10%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGIS LFPV V +WQET+GP FERDLCINSPTG GKTL+YALP++Q L CLRAL
Sbjct: 77 MGISKLFPVXVTLWQETVGPSDFERDLCINSPTGRGKTLAYALPLIQNLFTDPGGCLRAL 136
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VV+PT D ALQVK VF A+A +GL +GLA GQSS+ E S LI P+ + G +P
Sbjct: 137 VVVPTHDFALQVKRVFDALASLLGLRIGLAAGQSSLRHEFSSLIFLPREDDGP--NP-GF 193
Query: 121 LQEL--QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L L QS V+ILVAT GRL+DH+N +L+HL YLVVDE DR L E YQ+WLPTV++
Sbjct: 194 LSSLWFQSKVNILVATLGRLVDHVNK---LSLKHLRYLVVDEADRFLHEDYQSWLPTVIK 250
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LT+ FG L K+VL A LT+ P +L
Sbjct: 251 LTQ-----------------FG---------------------LAKIVLFAMLTRGPGRL 272
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
AQL LH+ LFL+ G+ Y+LPE LE YKLICE K+KPLYLVALL+SLGEEKCIVFT VE
Sbjct: 273 AQLILHYLLFLSAGKMCYRLPEYLECYKLICERKVKPLYLVALLKSLGEEKCIVFTRFVE 332
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
STH LC LLN FG+L+I IKE+SGL+ Q VRSKT+ F+ + QVLVSSDAMTR MDVEG
Sbjct: 333 STHHLCKLLNFFGDLKIGIKEFSGLKHQQVRSKTVGEFQRREFQVLVSSDAMTRVMDVEG 392
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418
+ NV+NYD P Y KTY+HR GRTARAGQ G CFTL+ KDEV F+KL++KA+ C H+
Sbjct: 393 LRNVINYDVPKYTKTYVHRPGRTARAGQTGCCFTLMSKDEVGGFEKLMKKAEASDCLQHT 452
Query: 419 IPSSLIESLRPVYKSG 434
+PSSLIE+L Y S
Sbjct: 453 VPSSLIEALHSTYSSA 468
>gi|168044025|ref|XP_001774483.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674195|gb|EDQ60707.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/407 (57%), Positives = 290/407 (71%), Gaps = 11/407 (2%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
GI +LFPVQVAVW + +GPG ERDLC+ SPTGSGKTLS+ALPIVQ LS R +R LRALV
Sbjct: 54 GIEALFPVQVAVWNQVLGPGGRERDLCVCSPTGSGKTLSFALPIVQLLSTRVLRRLRALV 113
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-RPKLEAGI-CYDPED 119
VLPTRDLA+QVK VF +APAVGLSVG+ VGQS++A E+ EL+K R +L Y+ +
Sbjct: 114 VLPTRDLAVQVKSVFDILAPAVGLSVGI-VGQSTVAAEVGELVKTRSRLVHSFETYEAVE 172
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+S +DILVATPGRLMDH+ T GFT+EHL YLVVDETDRLLR+ YQ+WLP VL +
Sbjct: 173 NNLVYESCIDILVATPGRLMDHLKNTPGFTVEHLQYLVVDETDRLLRQDYQSWLPNVLNV 232
Query: 180 TRSDNENRFSDASTFLPSAF---GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
+ RF D S G T RR +ERG K + +PR++K +LSATLT+DP
Sbjct: 233 IQI--PERFDDVSRRKAQCLRGTGVAFTQRRWCLERGSKGRVHPRVMKFLLSATLTKDPA 290
Query: 237 KLAQLDLHHPLFL--TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
K+AQLDL+ PL+L + E+RY LP++L+++KLI + KPL LVALL+ + I+F
Sbjct: 291 KIAQLDLYWPLYLAPSAEESRYHLPKQLKAFKLITRASKKPLVLVALLEQFKNQSTIIFN 350
Query: 295 SSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
+SVE+TH+L LL HF + EYS Q Q +R K L F +GK+ V+V+SDAMTRG
Sbjct: 351 ASVEATHQLFLLLRHFYAGQEFSVVEYSSRQPQHIRRKALADFTDGKVHVIVASDAMTRG 410
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
MDVEGV NV+NYD P Y KTY+HR GRTARAGQ GR FTLL K EV
Sbjct: 411 MDVEGVANVINYDVPVYAKTYVHRVGRTARAGQAGRAFTLLVKKEVN 457
>gi|326532600|dbj|BAK05229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/310 (69%), Positives = 247/310 (79%), Gaps = 1/310 (0%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S FPVQV+ W ETIGPG F+RD+CINSPTGSGKTL+YALPIVQ LS R VRCLRAL
Sbjct: 55 MGIESFFPVQVSAWLETIGPGAFQRDICINSPTGSGKTLAYALPIVQMLSTRKVRCLRAL 114
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF AIAP VGL+V AVGQSSIADEIS+LIK+ K E D E V
Sbjct: 115 VVLPTRDLALQVKEVFDAIAPVVGLTVASAVGQSSIADEISDLIKKSKQELYPSLDDEYV 174
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
E Q+ VDILVATPGRLMDHIN T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+Q T
Sbjct: 175 EMEPQTKVDILVATPGRLMDHINMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQFT 234
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
R ++ F +T + L TIRR GVERGFK K YPRL K+V SATLTQDP+KL+Q
Sbjct: 235 RPTKQDLFRHDTTGR-TLLHPLTTIRRSGVERGFKGKCYPRLAKIVCSATLTQDPSKLSQ 293
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L+LHHPL L +G+ RY++PE+LESYKLIC S +KPL L+ LLQ L EKC+VFT SV+ +
Sbjct: 294 LELHHPLLLNSGKKRYRIPEKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSVDDS 353
Query: 301 HRLCTLLNHF 310
HRL TLL F
Sbjct: 354 HRLSTLLGFF 363
>gi|2326341|emb|CAA72069.1| RH1 protein [Arabidopsis thaliana]
Length = 244
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/244 (72%), Positives = 211/244 (86%)
Query: 135 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 194
PGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F
Sbjct: 1 PGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPF 60
Query: 195 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254
+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +
Sbjct: 61 VPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGS 120
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN FG+ +
Sbjct: 121 RYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPK 180
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
IK KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+
Sbjct: 181 IKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTF 240
Query: 375 IHRA 378
IHRA
Sbjct: 241 IHRA 244
>gi|302839717|ref|XP_002951415.1| hypothetical protein VOLCADRAFT_61333 [Volvox carteri f.
nagariensis]
gi|300263390|gb|EFJ47591.1| hypothetical protein VOLCADRAFT_61333 [Volvox carteri f.
nagariensis]
Length = 654
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 203/448 (45%), Positives = 280/448 (62%), Gaps = 23/448 (5%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G LFPVQ AVWQ + G DLC+ +PTGSGKTL+YALP+V +L++ V CLRAL
Sbjct: 68 FGFPELFPVQTAVWQHSAGGTSTAHDLCVAAPTGSGKTLAYALPVVNSLAD--VGCLRAL 125
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG----ICYD 116
VVLPTRDLA+QV DVF + AV L+V LA ++S A E + ++ P + +
Sbjct: 126 VVLPTRDLAVQVYDVFRPLCDAVQLNVALAAARTSEAAEAAAIVGLPASSSSSSPFVAGG 185
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
+ D+LVATPGRLM H++ + G +L HL +LV DETDRLLR++YQ+WLP
Sbjct: 186 GSAAAPGCRRGADVLVATPGRLMSHLSGSPGVSLRHLRFLVADETDRLLRQSYQSWLP-- 243
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSL-KTIRRCGVERGFKDKPYP--RLVKMVLSATLTQ 233
+L + + + + + P FGSL + RR + + + R+VK+V+SATLT+
Sbjct: 244 -RLPEAVPKPKLHISPSDSPILFGSLPRHARRSASSQTYIPCTHVMCRVVKIVVSATLTR 302
Query: 234 DPNKLAQLDLHHPLFLTTGET-----------RYKLPERLESYKLICESKLKPLYLVALL 282
DP KL +L LHHP F+ T RY LP L Y+L+C + KPL L+ALL
Sbjct: 303 DPAKLQRLALHHPRFVATATAAGGGGGGAAAGRYSLPRSLSEYRLMCSAARKPLVLLALL 362
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
Q + IVFTSS+E TH+L +L+ +L ++ EYS L R+ L+ FR G ++
Sbjct: 363 QEWSGQSTIVFTSSLEMTHKLFLMLSAVQDLPDEVVEYSSLVPVRARAAALERFRTGSVE 422
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV+SDAMTRGMDV+ V NV+NYD P Y KTY+HRAGRTARAG+ GR TLL ++++ F
Sbjct: 423 LLVASDAMTRGMDVDCVQNVINYDAPVYAKTYVHRAGRTARAGKPGRVITLLRDEDMRHF 482
Query: 403 KKLLQKADNDSCPIHSIPSSLIESLRPV 430
K ++ KADN+ + +PS +E+LRP
Sbjct: 483 KAMIHKADNNFVREYKLPSERVEALRPA 510
>gi|384254028|gb|EIE27502.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 562
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/456 (44%), Positives = 265/456 (58%), Gaps = 61/456 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G LFPVQ A WQ T G DLCI++PTGSGKTL+YALPI+Q L R V LR LV
Sbjct: 123 GFVELFPVQAAAWQVTAGGHSAAHDLCISAPTGSGKTLAYALPILQGLLGRCVPRLRCLV 182
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
VLPTRDLA QV VFA + P +GL VG+A Q+S+ E + L D +
Sbjct: 183 VLPTRDLAAQVFKVFADLCPPLGLRVGMAAAQTSVGTEAATLFP-------------DAI 229
Query: 122 QELQS-----------AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
++ QS AVDILVATPGRLM H+ T G TL L YLV+DETDRLLR+AYQ
Sbjct: 230 RDQQSIRGMAAVSNSSAVDILVATPGRLMAHLKGTPGATLNDLRYLVIDETDRLLRQAYQ 289
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE--RGFKDKPYPRLVKMVLS 228
WLP V T + +R G + RG P ++K+V S
Sbjct: 290 DWLPFVTAATVGGPGD----------------PPVRGPGGQPVRG----PQRHVLKIVAS 329
Query: 229 ATLTQDPNKLAQLDLHHPLFLTTGET---------------RYKLPERLESYKLICESKL 273
ATLT+DP+K+ +L L+ P ++ G + Y +P+ L+ +K++C
Sbjct: 330 ATLTRDPSKIERLGLNCPRYIALGASDHRHATILHLLSHAREYAMPKSLKEFKVVCAGAD 389
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333
KP+ VALL+ L E ++FT+SVE+T RL LL+ LR + E+S L R+ TL
Sbjct: 390 KPVLAVALLRQLANEPTLIFTASVEATRRLFVLLHAVPSLRESVLEFSSLNSGPERAATL 449
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
AFR G ++LV+SD MTRGMDV V NVVNYD P Y KTY+HRAGRTAR G+ GR FTL
Sbjct: 450 AAFRGGDARILVASDGMTRGMDVPSVANVVNYDAPIYAKTYVHRAGRTARGGREGRVFTL 509
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 429
L +EV+ FK LL+K DN +++P + +++ RP
Sbjct: 510 LRTEEVRHFKGLLRKVDNAFVKDYALPKADVDAARP 545
>gi|356554241|ref|XP_003545457.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 333
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 191/328 (58%), Positives = 224/328 (68%), Gaps = 46/328 (14%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGIS LFPVQV +W ET+GPG FERDLCI P SGKTL+YA PIVQ LS LRAL
Sbjct: 48 MGISKLFPVQVTLWXETVGPGDFERDLCIKLPIESGKTLAYAFPIVQNLSTDTGGRLRAL 107
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VV+PTRDL+LQVK VF A+A +GL + LA QSS+ ++S LI P + G DP
Sbjct: 108 VVVPTRDLSLQVKRVFDALASLLGLRICLATDQSSLRHKLSSLIYLPGEDDG--QDP-GF 164
Query: 121 LQEL--QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L L QS VDILV TPGRL+DH+N +L+HL YL+VDE DRLLRE YQ+WLPTVL+
Sbjct: 165 LSSLWFQSKVDILVVTPGRLVDHVNK---LSLKHLRYLMVDEADRLLREDYQSWLPTVLK 221
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LT+S RL K+VLSATLT+DP +L
Sbjct: 222 LTQS--------------------------------------RLTKIVLSATLTRDPGRL 243
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
AQL+LHHPLFL+TG+ RY+LPE LE YKLICE K+KPLYLVALL+SLGEE CIVFT SVE
Sbjct: 244 AQLNLHHPLFLSTGKMRYRLPEYLECYKLICERKVKPLYLVALLKSLGEENCIVFTRSVE 303
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQ 326
STH LC LLN FG+L+I IKE+S L+ Q
Sbjct: 304 STHHLCKLLNCFGDLKIGIKEFSSLKHQ 331
>gi|356528222|ref|XP_003532704.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 341
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 193/331 (58%), Positives = 226/331 (68%), Gaps = 46/331 (13%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGIS LF VQVA+WQET+G FERDLCINSPT SGKTL+YALPIVQ LS L AL
Sbjct: 44 MGISKLFSVQVALWQETVGSDDFERDLCINSPTESGKTLAYALPIVQNLSTNTSDRLFAL 103
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VV+PTRDLALQVK VF A+A ++GL +GLA GQSS+ E+S LI P + G DP
Sbjct: 104 VVVPTRDLALQVKRVFDALASSLGLHIGLAAGQSSLRHELSSLIYLPGEDDG--PDP-GF 160
Query: 121 LQEL--QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L L QS V+ILVATPGRLMDH+N +L+HL YLVVDE DRLLRE YQ+WLPTVL+
Sbjct: 161 LSPLWFQSKVNILVATPGRLMDHVNK---LSLKHLRYLVVDEADRLLREDYQSWLPTVLK 217
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LT+ RL K+VLS LT DP +L
Sbjct: 218 LTQF--------------------------------------RLAKIVLSVILTLDPGRL 239
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
A L+LHHPLFL+ G+ RY+L E LE +KLICE K+KPLYLV LL+SLG+EKCIVFT SVE
Sbjct: 240 AXLNLHHPLFLSAGKMRYRLLEYLECFKLICERKVKPLYLVTLLKSLGKEKCIVFTRSVE 299
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVR 329
STH LC LLN FG+L+I IKE+SGL+ Q V+
Sbjct: 300 STHHLCKLLNCFGDLKIGIKEFSGLKHQLVQ 330
>gi|194214438|ref|XP_001915702.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Equus caballus]
Length = 550
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 181/462 (39%), Positives = 255/462 (55%), Gaps = 55/462 (11%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV E++ G DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 98 GISSYFPVQAAVIPALLESMANGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPLVQALLH 157
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF A L V L GQ ++A E L++R
Sbjct: 158 RAVCQVRALVVLPTKELAQQVSKVFNVYTDATPLRVALVTGQKTLAKEQETLVQR----- 212
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ + DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 213 --------TVDGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 264
Query: 172 WLPTVLQ--LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
WLP V+ R ++ FS P A + T C P L K++ SA
Sbjct: 265 WLPRVMAAAFPREGTKSLFSLLQRRQPQAITAASTC--C---------PQMPLQKLLFSA 313
Query: 230 TLTQDPNKLAQLDLHHPLFLTTG-----------------ETRYKLPERLESYKLICESK 272
TLTQ+P KL QL LH P +TG +Y P L + + C +
Sbjct: 314 TLTQNPEKLQQLGLHQPRLFSTGLAQRGSRDADAEADGESAGKYTFPAGLTHHYVPCSLR 373
Query: 273 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 332
KPL ++ L+ + + + FT+S E++HRL L FG + + E+S R
Sbjct: 374 SKPLVVLHLVLEMNFSRVLCFTNSRENSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKMI 431
Query: 333 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
LK F +GKIQ+L+S+DAM RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FT
Sbjct: 432 LKQFEQGKIQLLISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKTGQAFT 491
Query: 393 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
LL K + +RF ++L + H PS L++ L P Y++
Sbjct: 492 LLLKVQERRFLRMLAEGGVPELERHDTPSKLLQPLVPRYEAA 533
>gi|297484677|ref|XP_002694482.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Bos taurus]
gi|296478689|tpg|DAA20804.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Bos taurus]
Length = 555
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 178/458 (38%), Positives = 253/458 (55%), Gaps = 51/458 (11%)
Query: 2 GISSLFPVQVAV----WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV + T L R DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 103 GISSYFPVQAAVIPAVLESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLH 162
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 163 RAVCQVRALVVLPTKELAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQK----- 217
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+
Sbjct: 218 --------TADGFRCLADIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQS 269
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ R + F + L C P L K++ SATL
Sbjct: 270 WLPRVVAAAFPSEGPR-DPCAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATL 320
Query: 232 TQDPNKLAQLDLHHPLFLTTGET-----------------RYKLPERLESYKLICESKLK 274
TQ+P KL QL L+ P +TG +Y P L+ + + C + K
Sbjct: 321 TQNPEKLQQLGLYQPRLFSTGSAHRGPSDPDIDVDEDSGGKYTFPTGLKHHYVPCSLRFK 380
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL ++ L+ + + + FT+S E++HRL L+ FG + + E+S R LK
Sbjct: 381 PLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGG--VTVAEFSSRYGPGQRKSILK 438
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +GKIQ+L+S+DAM RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 439 QFEQGKIQLLISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLL 498
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K + +RF ++L++ H PS L++ L P Y+
Sbjct: 499 LKVQERRFLRMLEEGGVPGLERHDTPSELLQPLVPQYE 536
>gi|194674602|ref|XP_001787674.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Bos taurus]
Length = 565
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 178/458 (38%), Positives = 253/458 (55%), Gaps = 51/458 (11%)
Query: 2 GISSLFPVQVAV----WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV + T L R DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 113 GISSYFPVQAAVIPAVLESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLH 172
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 173 RAVCQVRALVVLPTKELAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQK----- 227
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+
Sbjct: 228 --------TADGFRCLADIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQS 279
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ R + F + L C P L K++ SATL
Sbjct: 280 WLPRVVAAAFPSEGPR-DPCAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATL 330
Query: 232 TQDPNKLAQLDLHHPLFLTTGET-----------------RYKLPERLESYKLICESKLK 274
TQ+P KL QL L+ P +TG +Y P L+ + + C + K
Sbjct: 331 TQNPEKLQQLGLYQPRLFSTGSAHRGPSDPDIDVDEDSGGKYTFPTGLKHHYVPCSLRFK 390
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL ++ L+ + + + FT+S E++HRL L+ FG + + E+S R LK
Sbjct: 391 PLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGG--VTVAEFSSRYGPGQRKSILK 448
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +GKIQ+L+S+DAM RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 449 QFEQGKIQLLISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLL 508
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K + +RF ++L++ H PS L++ L P Y+
Sbjct: 509 LKVQERRFLRMLEEGGVPGLERHDTPSELLQPLVPQYE 546
>gi|281340804|gb|EFB16388.1| hypothetical protein PANDA_012336 [Ailuropoda melanoleuca]
Length = 490
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 179/458 (39%), Positives = 254/458 (55%), Gaps = 48/458 (10%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV E+ G RDLC+++PTGSGKTL++ +P+VQ L
Sbjct: 44 GISSYFPVQAAVIPALLESTANGFLVARGGYRPRDLCVSAPTGSGKTLAFVIPVVQALLR 103
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF + A L V L GQ S+ E L+++
Sbjct: 104 RAVCQVRALVVLPTKELAQQVSKVFNSYTDATPLRVALITGQKSLVKEQESLVQK----- 158
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ D++VATPGRL+DHI+ T GF+L+HL +LV+DE DR++ +Q+
Sbjct: 159 --------TADGFRCLADVVVATPGRLVDHIDQTPGFSLQHLRFLVIDEADRMIDSMHQS 210
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V++ SD + P A L+ + P L K++ SATL
Sbjct: 211 WLPRVVEAVFR------SDGAKDRPLAL--LQRRQPQATTAASISCPQMPLQKLLFSATL 262
Query: 232 TQDPNKLAQLDLHHPLFLTTGETR---------------YKLPERLESYKLICESKLKPL 276
TQ+P KL QL L+ P +TG R Y P L + + C + KPL
Sbjct: 263 TQNPEKLQQLGLYQPRLFSTGLARRGPRDADEDRDSGGKYTFPTGLSHHYVPCSLRTKPL 322
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
++ L+ + + FT+S E++HRL L+ FG + E+S S R LK F
Sbjct: 323 AVLHLILEKNFSRVLCFTNSRENSHRLFLLVQAFGG--VTAAEFSSRCGPSQRKVVLKQF 380
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+GKIQ+L+S+DAM RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 381 EQGKIQLLISTDAMARGIDVQGVQRVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK 440
Query: 397 DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
+ ++F ++L +A H IP+ L++ L P Y+
Sbjct: 441 VQERKFLRMLAEAGVPEMARHDIPNELLQPLLPRYEEA 478
>gi|344299254|ref|XP_003421302.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Loxodonta africana]
Length = 690
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 184/458 (40%), Positives = 254/458 (55%), Gaps = 51/458 (11%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G F RDLC+++PTGSGKTL++ +P+VQTL +
Sbjct: 238 GISSYFPVQAAVIPALLESAAGGFLVGRGGFRPRDLCVSAPTGSGKTLAFVIPVVQTLLH 297
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 298 RVVCRIRALVVLPTKELAQQVNRVFNIYTDATPLRVALVTGQKSLAKEQESLVQK-SADG 356
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
C DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 357 YRCL------------ADIVVATPGRLVDHIDQTAGFSLQQLRFLVIDEADRMVDSMHQS 404
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A +R V P L K++ SATL
Sbjct: 405 WLPRVVAAA-------FQSQGPADPCALLQRGPLR--AVTAASTWAPQMPLQKLLFSATL 455
Query: 232 TQDPNKLAQLDLHHPLFLTTG-ETR----------------YKLPERLESYKLICESKLK 274
TQ+P KL QL LH P + G E+R Y PE L + + C K
Sbjct: 456 TQNPEKLQQLALHQPRLFSAGLESRGLEGTGDDVAGDMGGKYAFPEGLAHHYVPCSLSTK 515
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL ++ L+ ++ + + FT+S E++HRL L+ FG + + E+S R +TLK
Sbjct: 516 PLAVLHLVLTMRFSRVLCFTNSRENSHRLFLLVQAFGG--VSVAEFSSRHGPGQRKRTLK 573
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +GKIQ+LVS+DA RG+DV+GV V+NYD P Y +TY+HR GRTARAG+ G+ FTLL
Sbjct: 574 KFEQGKIQLLVSTDATARGIDVQGVELVLNYDAPQYARTYVHRVGRTARAGRAGQAFTLL 633
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ + +RF ++L A H IP L++ L P Y+
Sbjct: 634 LRVQERRFLRMLAGAGVLELRRHEIPGELLQPLVPCYE 671
>gi|301775625|ref|XP_002923233.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Ailuropoda
melanoleuca]
Length = 517
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/458 (39%), Positives = 254/458 (55%), Gaps = 48/458 (10%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV E+ G RDLC+++PTGSGKTL++ +P+VQ L
Sbjct: 66 GISSYFPVQAAVIPALLESTANGFLVARGGYRPRDLCVSAPTGSGKTLAFVIPVVQALLR 125
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF + A L V L GQ S+ E L+++
Sbjct: 126 RAVCQVRALVVLPTKELAQQVSKVFNSYTDATPLRVALITGQKSLVKEQESLVQK----- 180
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ D++VATPGRL+DHI+ T GF+L+HL +LV+DE DR++ +Q+
Sbjct: 181 --------TADGFRCLADVVVATPGRLVDHIDQTPGFSLQHLRFLVIDEADRMIDSMHQS 232
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V++ SD + P A L+ + P L K++ SATL
Sbjct: 233 WLPRVVEAVFR------SDGAKDRPLAL--LQRRQPQATTAASISCPQMPLQKLLFSATL 284
Query: 232 TQDPNKLAQLDLHHPLFLTTGETR---------------YKLPERLESYKLICESKLKPL 276
TQ+P KL QL L+ P +TG R Y P L + + C + KPL
Sbjct: 285 TQNPEKLQQLGLYQPRLFSTGLARRGPRDADEDRDSGGKYTFPTGLSHHYVPCSLRTKPL 344
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
++ L+ + + FT+S E++HRL L+ FG + E+S S R LK F
Sbjct: 345 AVLHLILEKNFSRVLCFTNSRENSHRLFLLVQAFGG--VTAAEFSSRCGPSQRKVVLKQF 402
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+GKIQ+L+S+DAM RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 403 EQGKIQLLISTDAMARGIDVQGVQRVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK 462
Query: 397 DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
+ ++F ++L +A H IP+ L++ L P Y+
Sbjct: 463 VQERKFLRMLAEAGVPEMARHDIPNELLQPLLPRYEEA 500
>gi|291412934|ref|XP_002722733.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Oryctolagus
cuniculus]
Length = 507
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 180/459 (39%), Positives = 256/459 (55%), Gaps = 53/459 (11%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GIS+ FPVQ AV +G G ++ RDLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 57 GISAYFPVQAAVIPVVLESAASGFLVGRGGYQPRDLCVSAPTGSGKTLAFVIPVVQALLH 116
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L++R
Sbjct: 117 RVVCQIRALVVLPTKELAQQVSKVFNIYTDATPLRVALVTGQRSLAKEQEGLVQR----- 171
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF L+ L +LV+DE DR++ +Q+
Sbjct: 172 --------TADGYRCLADIVVATPGRLVDHIDQTPGFHLQQLRFLVIDEADRMVDSMHQS 223
Query: 172 WLPTVLQ--LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
WLP V+ R + S P A + T R P L K++ SA
Sbjct: 224 WLPRVVAAAFQREGPGDLCSVLQRSQPPAVTAASTCR-----------PQVPLQKLLFSA 272
Query: 230 TLTQDPNKLAQLDLHHPLFLTTGET---------------RYKLPERLESYKLICESKLK 274
TLTQDP +L +L LH P ++G+ +Y P L + + C + K
Sbjct: 273 TLTQDPERLQRLGLHQPRLFSSGQAHGGSRDGEERGGLAGKYDFPAGLTHHYVPCRLRSK 332
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL ++ L+ L + + FT+S E++HRL L+ FG + + E+S R LK
Sbjct: 333 PLVVLHLILELKFSRVLCFTNSRENSHRLFLLVQAFGG--VSVAEFSSRCGPGQRRGILK 390
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F++GKIQ+LVS+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 391 RFQQGKIQLLVSTDAAARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGRTGQAFTLL 450
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 433
K + +RF ++L++A H PS L++ L P Y++
Sbjct: 451 LKVQERRFLQMLEEAGAPRLQRHETPSELLQPLVPRYEA 489
>gi|355786666|gb|EHH66849.1| hypothetical protein EGM_03914, partial [Macaca fascicularis]
Length = 494
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 252/457 (55%), Gaps = 48/457 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 45 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 104
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 105 RVVCHIRALVVLPTKELAQQVNKVFNIYTDATPLRVSLITGQKSLAKEQESLVQK----- 159
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF L+ L +LV+DE DR++ +Q+
Sbjct: 160 --------TADGFRCLADIVVATPGRLVDHIDQTPGFNLQQLRFLVIDEADRMIDSMHQS 211
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A + ++ V P L K++ SATL
Sbjct: 212 WLPRVVAAA-------FQSEDPTDPCALLQRRQVQ--AVTAASTCCPQMPLQKLLFSATL 262
Query: 232 TQDPNKLAQLDLHHPLFLTTGETR--------------YKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG R Y P L + + C KPL
Sbjct: 263 TQNPEKLQQLGLHQPRLFSTGLARRGLEDTDGDGDLGKYAFPVGLTHHYVPCSLSSKPLV 322
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G K + FT+S E++HRL L+ FG + + E+S R + LK F
Sbjct: 323 VLHLVLEMGFSKVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRRILKQFE 380
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HRAGRTARAG++G+ FTLL K
Sbjct: 381 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRAGRTARAGKMGQAFTLLLKV 440
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 441 QERRFLQMLTEAGAPELRRHELSSKLLQPLVPQYEEA 477
>gi|109099284|ref|XP_001105887.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Macaca mulatta]
Length = 664
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 180/455 (39%), Positives = 252/455 (55%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 215 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 274
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 275 RVVCHIRALVVLPTKELAQQVNKVFNIYTDATPLRVSLITGQKSLAKEQESLVQK----- 329
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF L+ L +LV+DE DR++ +Q+
Sbjct: 330 --------TADGFRCLADIVVATPGRLVDHIDQTPGFNLQQLRFLVIDEADRMIDSMHQS 381
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A + ++ V P L K++ SATL
Sbjct: 382 WLPRVVAAA-------FQSEDPTDPCALLQRRQVQ--AVTAASTCCPQMPLQKLLFSATL 432
Query: 232 TQDPNKLAQLDLHHPLFLTTGETR--------------YKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG R Y P L + + C KPL
Sbjct: 433 TQNPEKLQQLGLHQPRLFSTGLARRGLEDTDGDGDLGKYAFPVGLTHHYVPCSLSSKPLV 492
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G K + FT+S E++HRL L+ FG + + E+S R + LK F
Sbjct: 493 VLHLVLEMGFSKVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRRILKQFE 550
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HRAGRTARAG++G+ FTLL K
Sbjct: 551 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRAGRTARAGKMGQAFTLLLKV 610
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 611 QERRFLQMLTEAGAPELRRHELSSKLLQPLVPRYE 645
>gi|302683871|ref|XP_003031616.1| hypothetical protein SCHCODRAFT_55946 [Schizophyllum commune H4-8]
gi|300105309|gb|EFI96713.1| hypothetical protein SCHCODRAFT_55946 [Schizophyllum commune H4-8]
Length = 566
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 258/478 (53%), Gaps = 60/478 (12%)
Query: 1 MGISSLFPVQVAVW--------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
+GI+ LF VQ A+ + P RD C+++PTGSGKTL+Y PIV+ LS+R
Sbjct: 98 LGITELFAVQTALLPFLLANPSRAVYTPYNLPRDACVSAPTGSGKTLAYVTPIVEVLSSR 157
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
LRALVV+PTRDL QVK+ F A+ GL +G+ GQ S + E S+++
Sbjct: 158 ITTRLRALVVVPTRDLVTQVKETFEAVGKGRGLKIGVVTGQHSFSHEQSQIVG------- 210
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
D L S VDIL+ TPGRL+DH+N T FTL+HL +L++DE DRLL +++Q W
Sbjct: 211 ---DSTTSLAGGTSKVDILICTPGRLIDHLNGTTNFTLQHLRFLIIDEADRLLAQSFQGW 267
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD-------KPYPRLVKM 225
L TVL T S + LP A + + GF + +P K+
Sbjct: 268 LSTVLAATTQSTVPSTSSQDSNLPRAEAAAPHVVPA---LGFPNVLSRQPERPRSSCQKL 324
Query: 226 VLSATLTQDPNKLAQLDLHHPLF-----------LTTG---------ETRYKLPERLESY 265
+ SATLTQDP KLA L+LH+P + +T+G R+ +PE L +
Sbjct: 325 LFSATLTQDPGKLAALNLHNPKYFIVRSKAKRETITSGILPDVADVVMERFSMPEGLTEH 384
Query: 266 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR----------- 314
+C+ KPL L+ S G +VFT S EST RL L F + R
Sbjct: 385 MAVCDPADKPLAFFHLITSHGIRNALVFTKSAESTTRLVRLFEFFEKARAERSPAGDSRP 444
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
+ I YS + R L+ FR+ +IQ+LV+SD ++RG+DV V++VV+YD P ++ Y
Sbjct: 445 VTISAYSSDLGGAERRAILERFRKQEIQILVASDLISRGLDVSHVSHVVSYDAPVDVRKY 504
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIESLRPVY 431
+HR GRTARAG+ G +TL+ + E + FK ++++AD+ S + +E LRP+Y
Sbjct: 505 VHRVGRTARAGRAGSAWTLVEEQEARYFKNMMKEADHLPSLKKVKVDRKEMEELRPLY 562
>gi|73994975|ref|XP_543351.2| PREDICTED: ATP-dependent RNA helicase DDX51 [Canis lupus
familiaris]
Length = 631
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 178/457 (38%), Positives = 252/457 (55%), Gaps = 51/457 (11%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV E+I G DLC+++PTGSGKTL++ +P+VQ L
Sbjct: 181 GISSYFPVQAAVIPTLLESIANGFLVARGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLC 240
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF A L V L GQ S+ E L+++
Sbjct: 241 RAVCQVRALVVLPTKELAQQVSKVFNIYTDATPLRVALITGQKSLVKEQESLVQK----- 295
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ + D++VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+
Sbjct: 296 --------TVDGFRCLADVVVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQS 347
Query: 172 WLPTVLQLT-RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
WLP V++ SD N F L+ + P L K++ SAT
Sbjct: 348 WLPRVVEAAFPSDVAN----------DPFALLQRRQLQATTAASISCPQMPLQKLLFSAT 397
Query: 231 LTQDPNKLAQLDLHHPLFLTTG---------------ETRYKLPERLESYKLICESKLKP 275
LTQ+P KL QL L+ P +TG +Y P L + + C + KP
Sbjct: 398 LTQNPEKLQQLGLYQPRLFSTGLAGRGPRDIDRDGESGGKYTFPTGLSHHYVPCSLRTKP 457
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
L ++ L+ + + FT+S E++HRL L+ FG + E+S R R LK
Sbjct: 458 LAILHLILERNFSRVLCFTNSRENSHRLFLLVQAFGG--VAAAEFSSRCRPGQRKVVLKQ 515
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F +GKIQ+L+S+DAM RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 516 FEQGKIQLLISTDAMARGIDVQGVQLVINYDAPQYLRTYVHRVGRTARAGRTGQAFTLLL 575
Query: 396 KDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K + +RF ++L +A H I S L++ L P Y+
Sbjct: 576 KVQERRFLQMLAEAGVPKMARHDIHSELLQPLVPRYE 612
>gi|449543170|gb|EMD34147.1| hypothetical protein CERSUDRAFT_125827 [Ceriporiopsis subvermispora
B]
Length = 699
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 186/493 (37%), Positives = 259/493 (52%), Gaps = 74/493 (15%)
Query: 1 MGISSLFPVQVAVWQETIG---------PGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
+G+S LF VQ AV + P RDLC+++PTGSGKTL+Y LPI +TL++
Sbjct: 209 LGVSELFAVQTAVIPFLLASSRLRSLYLPYDPPRDLCVSAPTGSGKTLAYVLPITETLTS 268
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI---KRPK 108
R V LRALVVLPTRDL QV++ F A+A GL +G A GQ S A E ++L+ RP
Sbjct: 269 RIVTRLRALVVLPTRDLVNQVRETFEAVAKGRGLKIGTATGQHSFAHEQAQLVAERSRP- 327
Query: 109 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 168
+Q S VDIL+ TPGRL+DH+N T F+L+HL YLV+DE DRLL ++
Sbjct: 328 ------------VQGGSSKVDILICTPGRLIDHLNGTPNFSLQHLRYLVIDEADRLLAQS 375
Query: 169 YQAWLPTVLQLTRSDNENRFSDA-----------STFLPSAFGSLKTI---------RRC 208
+Q WL VL T + R DA ST P+A + R
Sbjct: 376 FQDWLAQVLSATNA--PQRLDDAETSSISEGRLSSTSSPTAIPYPDALSPAFLHLLDRMP 433
Query: 209 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGET------------- 254
+K K++ SATLT+DP+K+A L+LH P F+ T
Sbjct: 434 ASTTDVDEKTEASCQKLLFSATLTRDPSKIAALNLHSPKYFVVQSRTDRSDSKEDGVLNI 493
Query: 255 ---RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF- 310
++ +P L ++CE+ KPL L L+ + +VFT S EST RL L F
Sbjct: 494 VMEKFSMPSTLSENMIVCETSEKPLMLFHLVHAHSVTNALVFTKSAESTARLVRLFEFFE 553
Query: 311 --------GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
G RI +K YS S R L+ F+ KI +LV SD ++RG+D+ V++V
Sbjct: 554 AAQSSTAQGSARIVVKAYSSDLSPSERKSILEQFKNQKIHILVCSDLISRGIDISHVSHV 613
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPS 421
V+YD P ++ Y+HR GRTARAG+ G +TL+ + E + FK +L++AD+ D +
Sbjct: 614 VSYDAPVDMRKYVHRVGRTARAGRFGSAWTLVEEQEARYFKSMLKEADHLDKVKRLRVSE 673
Query: 422 SLIESLRPVYKSG 434
LRP Y++
Sbjct: 674 KETTPLRPAYENA 686
>gi|426247154|ref|XP_004017351.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51
[Ovis aries]
Length = 676
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 177/458 (38%), Positives = 251/458 (54%), Gaps = 51/458 (11%)
Query: 2 GISSLFPVQVAV----WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV + T L R DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 224 GISSYFPVQAAVIPALLESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLH 283
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 284 RAVCQVRALVVLPTKELAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQK----- 338
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DH++ T GF+L+HL +L++DE DR++ +Q+
Sbjct: 339 --------TADGFRCLADIMVATPGRLVDHVDQTPGFSLQHLRFLIIDEADRMIDSMHQS 390
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A L+ + V P L K++ SATL
Sbjct: 391 WLPRVVAAA-------FPSEGPKDPCAL--LQRTQPRVVTAASMCCPQMPLQKLLFSATL 441
Query: 232 TQDPNKLAQLDLHHPLFLTTGET-----------------RYKLPERLESYKLICESKLK 274
TQ+P KL QL L+ P +TG +Y P L + + C + K
Sbjct: 442 TQNPEKLQQLGLYQPRLFSTGSAYRAPSNPGIDVDGDSGGKYTFPVGLTHHYVPCSLRFK 501
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL ++ L+ + + + FT+S E++HRL L+ FG + + E+S R LK
Sbjct: 502 PLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGG--VTVAEFSSRYGPGQRKSILK 559
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 560 QFEQGKIQLLISTDATARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLL 619
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K + +RF +L++ H PS L++ L P Y+
Sbjct: 620 LKVQERRFLHMLEEGGVPGMERHDTPSELLQPLVPRYE 657
>gi|449663831|ref|XP_002165436.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Hydra
magnipapillata]
Length = 734
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 171/424 (40%), Positives = 241/424 (56%), Gaps = 53/424 (12%)
Query: 2 GISSLFPVQVAV----WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
GI LFPVQ AV +T RD+C+ +PTGSGKTLSY LP++++L+ V+ L
Sbjct: 225 GIEHLFPVQTAVITYMHSQTKMLNFPPRDICVEAPTGSGKTLSYVLPVIESLTQYIVKEL 284
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
LVVLP++DLA+QVK VF++ + VGL G ++ E S+L+ C P
Sbjct: 285 YCLVVLPSKDLAIQVKQVFSSYLKGTNIKVGLICGVKTLEKERSKLV---------CKGP 335
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+ + + V+ILVATPGRL+DH+ T GF+L+HL +LV+DE DRLL + Y WL VL
Sbjct: 336 QGYM----NMVEILVATPGRLVDHLKTTSGFSLKHLRFLVIDEADRLLSQDYSGWLELVL 391
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
+ +S + +F T R F+ P L K++ SATLTQ+P K
Sbjct: 392 ESAQSLSYRKFPHPLTV-----------------RTFQKNIIP-LQKLLFSATLTQNPEK 433
Query: 238 LAQLDLHHPLFLTT----------------GETRYKLPERLESYKLICESKLKPLYLVAL 281
LA L L++P+ + E R+ +PE+L +I + +LKPL +V L
Sbjct: 434 LAPLRLYNPILFISKRDNEKTKKDGSTENKSEFRFIVPEQLVEKMVIVKEELKPLVIVHL 493
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+ L ++ + FT S+E+THRL LL G + E+S ++ R ++ F+ G I
Sbjct: 494 MLKLKYKRILCFTKSIEATHRLHLLLQSIGGFTVA--EFSSNLTETQRKGIIRDFKNGSI 551
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
L+SSDAM RGMD++ VN VVNYD PA KTY+HR GRTARAG G T+L K +V
Sbjct: 552 DALISSDAMARGMDIDNVNMVVNYDSPANSKTYVHRVGRTARAGNRGEALTILTKKKVYP 611
Query: 402 FKKL 405
FKK+
Sbjct: 612 FKKM 615
>gi|297693495|ref|XP_002824053.1| PREDICTED: ATP-dependent RNA helicase DDX51 isoform 1 [Pongo
abelii]
Length = 672
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 177/455 (38%), Positives = 252/455 (55%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 223 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 282
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 283 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK----- 337
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 338 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 389
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ +E+ + F ++ C P L K++ SATL
Sbjct: 390 WLPRVVAAA-FQSEDPADPCALFQRRQAQAVTAASTCC--------PQMPLQKLLFSATL 440
Query: 232 TQDPNKLAQLDLHHPLFLTTGET--------------RYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG T +Y P L + + C KPL
Sbjct: 441 TQNPEKLQQLGLHQPRLFSTGLTHRGLEDTDGDGDSEKYAFPVGLTHHYVPCSLNSKPLV 500
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 501 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 558
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 559 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 618
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 619 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 653
>gi|297693497|ref|XP_002824054.1| PREDICTED: ATP-dependent RNA helicase DDX51 isoform 2 [Pongo
abelii]
Length = 665
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 177/455 (38%), Positives = 252/455 (55%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 216 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 275
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 276 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK----- 330
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 331 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 382
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ +E+ + F ++ C P L K++ SATL
Sbjct: 383 WLPRVVAAA-FQSEDPADPCALFQRRQAQAVTAASTCC--------PQMPLQKLLFSATL 433
Query: 232 TQDPNKLAQLDLHHPLFLTTGET--------------RYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG T +Y P L + + C KPL
Sbjct: 434 TQNPEKLQQLGLHQPRLFSTGLTHRGLEDTDGDGDSEKYAFPVGLTHHYVPCSLNSKPLV 493
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 494 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 551
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 552 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 611
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 612 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 646
>gi|25455599|gb|AAH40185.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sapiens]
Length = 666
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 178/455 (39%), Positives = 250/455 (54%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 217 GISSYFPVQAAVIPALLESAACGFLVGRGGYRLSDLCVSAPTGSGKTLAFVIPVVQALLS 276
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 277 RVVCHIRALVVLPTKELARQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK----- 331
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 332 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 383
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A LK + V P L K++ SATL
Sbjct: 384 WLPRVVAAA-------FQSEDPADPCAL--LKRRQAQAVTAASTCCPQMPLQKLLFSATL 434
Query: 232 TQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +Y P L + + C KPL
Sbjct: 435 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 494
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 495 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 552
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 553 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 612
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 613 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 647
>gi|348550777|ref|XP_003461207.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX51-like [Cavia porcellus]
Length = 677
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 175/456 (38%), Positives = 252/456 (55%), Gaps = 49/456 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GIS+ FPVQ AV +G G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 227 GISAYFPVQAAVIPAVLESSASGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 286
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ +A E L+++
Sbjct: 287 RVVCHIRALVVLPTKELAQQVSRVFNVYTDATPLRVALVTGQKPLAKEQESLVQK----- 341
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T+GF+L+ L +L+VDE DR++ +Q+
Sbjct: 342 --------TADGYRCLADIVVATPGRLVDHIDQTQGFSLQQLRFLIVDEADRMIDSMHQS 393
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P+ L+ R V P L K++ SATL
Sbjct: 394 WLPRVMAAA-------FPCEGPTDPATL--LQRRRAPAVTAASTCCPQMPLQKLLFSATL 444
Query: 232 TQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKLKPL 276
TQ+P KL +L L+ P +T E +Y P L + + C KPL
Sbjct: 445 TQNPEKLQRLGLYLPRLFSTRLAHRALEDDTAGGDPEGKYAFPSGLTHHYVPCSLNAKPL 504
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
++ L+ + + + FT+S E++HRL L+ FG + + E+S R K LK F
Sbjct: 505 AIIHLVLGMSISRTLCFTNSRENSHRLFLLVQAFGG--VSVAEFSACYGPGHRRKILKQF 562
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+GKIQ+L+S+DA RG+DV GV V+NYD P Y++TY+HR GRTARAG++GR FTLL K
Sbjct: 563 EQGKIQLLISTDATARGIDVPGVELVINYDAPQYLRTYVHRVGRTARAGRMGRAFTLLLK 622
Query: 397 DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H +PS L++ L P Y+
Sbjct: 623 VQERRFLRMLAEAGAPELVRHEVPSKLLQPLVPRYE 658
>gi|449281559|gb|EMC88606.1| ATP-dependent RNA helicase DDX51, partial [Columba livia]
Length = 489
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 181/458 (39%), Positives = 259/458 (56%), Gaps = 56/458 (12%)
Query: 2 GISSLFPVQV----AVWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ A+ Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +
Sbjct: 47 GIQSFFPVQAEVIPAILQSASNGYLMGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLD 106
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF GL V L GQ S A E L++ K
Sbjct: 107 RVVCQVRALVVLPTKELAQQVSKVFNIYTDGTGLKVVLITGQKSFAKEQEMLVQ--KKVT 164
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G C S DI+VATPGRL DHIN T GF+L L +LVVDE DR++ + +Q
Sbjct: 165 GYC-----------SLADIIVATPGRLTDHINQTPGFSLTQLRFLVVDEADRMIDDMHQN 213
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR--LVKMVLSA 229
L +++ EN + F + G + C YP+ L K++ SA
Sbjct: 214 CLNQIVK-AAFQVENGSGSNTLFWRTKPGPITAASSC----------YPQIPLQKLLFSA 262
Query: 230 TLTQDPNKLAQLDLHHPLFLTT--------GE-------TRYKLPERLESYKLICESKLK 274
TLTQDP KL QL+L P T+ GE T+Y LPE L + C+ K
Sbjct: 263 TLTQDPEKLQQLNLFQPRLFTSVYSEKKSLGEGTETEQDTKYTLPEGLSQCYVPCDLNSK 322
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL L+ + ++ + + FT+S E++HRL L+ FG R+ + E+S + R +T+K
Sbjct: 323 PLLLLHFMLTMKFSRVLCFTNSREASHRLFLLVQAFG--RVTVAEFSSRLSPNERQRTMK 380
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +GKIQ+L+S+DA RG+D++GVN V+NYD P +I+TYIHR GRTARAG++G F+L+
Sbjct: 381 EFEQGKIQLLISTDATARGIDIKGVNYVINYDAPQFIRTYIHRVGRTARAGEVGVAFSLV 440
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ + +RF ++L+ A H + + SL+P+ +
Sbjct: 441 LRIQERRFLRMLKDAGIRDVKKHPVKGN---SLKPLVQ 475
>gi|402888183|ref|XP_003907453.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Papio anubis]
Length = 656
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 178/455 (39%), Positives = 252/455 (55%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 207 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 266
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 267 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLITGQKSLAKEQESLVQK----- 321
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF L+ L +LV+DE DR++ +Q+
Sbjct: 322 --------TADGYRCLADIVVATPGRLVDHIDQTPGFNLQQLRFLVIDEADRMIDSMHQS 373
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A L+ + V P L K++ SATL
Sbjct: 374 WLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATL 424
Query: 232 TQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +Y P L + + C KPL
Sbjct: 425 TQNPEKLQQLGLHQPRLFSTGLAHRGLENTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 484
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R + LK F
Sbjct: 485 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRRILKQFE 542
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HRAGRTARAG+ G+ FTLL +
Sbjct: 543 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRAGRTARAGKTGQAFTLLLRV 602
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L+++L P Y+
Sbjct: 603 QERRFLQMLTEAGVPELRRHELSSKLLQALVPRYE 637
>gi|395332279|gb|EJF64658.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 694
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 182/487 (37%), Positives = 258/487 (52%), Gaps = 67/487 (13%)
Query: 1 MGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
+GI+ LF VQ AV + P DLC+++PTGSGKTL+Y LPIV+ LS+
Sbjct: 206 LGITELFAVQTAVVPLLLSSPRSRALYRPYDPPEDLCVSAPTGSGKTLAYVLPIVEILSS 265
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V LRALVVLPTRDL LQV++ F AIA GL +G A GQ S A E ++L+ E
Sbjct: 266 RVVTRLRALVVLPTRDLVLQVRETFEAIAKGRGLKIGTATGQHSFAHEQAQLVAERNEE- 324
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
LQ S VDIL+ TPGRL+DH+N T F+L+HL +LV+DE DRLL +++Q
Sbjct: 325 ---------LQGGSSKVDILICTPGRLIDHLNGTPNFSLQHLRFLVIDEADRLLAQSFQD 375
Query: 172 WLPTVLQLTRSDNENRFSDAS---------------------TFLPSAFGSLKTIRRCGV 210
WL VL TR + S AS + P+ L+ + V
Sbjct: 376 WLAQVLAATRPPRASDDSGASLSSELTTASINLAARGRPHPDSLSPTFLHLLRGVHY--V 433
Query: 211 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE----------------- 253
+ +K P K++ SATLT+DP K+A L L P ++
Sbjct: 434 RTDYDEKKEPSCQKLLFSATLTRDPAKIAALGLRQPKYVVVQSPKTSAASKEEGVLDFVM 493
Query: 254 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313
++ +P L + ++CES +KPL L L+ + G +VFT S EST RL L F
Sbjct: 494 EKFTMPATLTEHMVVCESSVKPLMLFHLVHARGVTNALVFTKSAESTARLVRLFEFFESA 553
Query: 314 -------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
RI + YS R L+ F+ +Q+LV SD ++RG+D+ V++VV+YD
Sbjct: 554 HSDSQGRRIVARAYSSDLAPGERKSILEQFKSQDVQLLVCSDLISRGIDISHVSHVVSYD 613
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIE 425
P + Y+HR GRTARAG+ G +TL+ + E + FK +L++AD+ D + + +E
Sbjct: 614 VPVDFRKYVHRVGRTARAGRAGDAWTLVEEQEARYFKTMLKEADHLDKVKRVRVADADVE 673
Query: 426 SLRPVYK 432
L+P Y+
Sbjct: 674 PLKPAYE 680
>gi|299750023|ref|XP_001836493.2| ATP-dependent RNA helicase [Coprinopsis cinerea okayama7#130]
gi|298408706|gb|EAU85306.2| ATP-dependent RNA helicase [Coprinopsis cinerea okayama7#130]
Length = 692
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 184/487 (37%), Positives = 262/487 (53%), Gaps = 63/487 (12%)
Query: 1 MGISSLFPVQVAVWQETI-----GPGLFE-----RDLCINSPTGSGKTLSYALPIVQTLS 50
+GI+ LF VQ A+ + G GL+ DLC+++PTGSGKTL+Y LPIV+TL
Sbjct: 206 LGITELFAVQTAIVPHLLTGSSSGGGLYRPYDPPYDLCVSAPTGSGKTLAYVLPIVETLQ 265
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R V LRALVVLPTRDL QV++ F AI+ GL +G A GQ S A E S+L+
Sbjct: 266 TRVVTRLRALVVLPTRDLVGQVRETFEAISKGTGLKIGSASGQHSFAHEQSQLV------ 319
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
YD L S VDIL+ TPGRLMDH+ T F+L+HL YLV+DE DRLL +++Q
Sbjct: 320 ----YDRTSHLAGGSSKVDILICTPGRLMDHLVGTPNFSLQHLRYLVIDEADRLLAQSFQ 375
Query: 171 AWLPTVLQLTRSDNENRFSDASTF--LPSAFG--SLKTIRRCGVERGFKDKPYPRLV--- 223
WL VL R+ + F D++T +PS+ +++ I P P +
Sbjct: 376 DWLAQVLAAIRTPKKGTFLDSTTVDNIPSSTSPYTIQPIPDGLAPNTLHQLPIPDIPTFL 435
Query: 224 ---------KMVLSATLTQDPNKLAQLDLHHPLFL--TTGE-------------TRYKLP 259
K++ SATLT+DP K+A LDL P ++ +G+ ++ +P
Sbjct: 436 NEDRASSCQKLLFSATLTRDPGKIAALDLRDPRYIIVQSGKDQSVEENVTQVVLEKFAVP 495
Query: 260 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------ 313
+ L + ++ KPL + L+ S +VFT S EST RL L F E
Sbjct: 496 DTLREHMIVVNPSKKPLIMFHLVYSHQVTNALVFTKSAESTTRLLRLFEFFEEARMAAGG 555
Query: 314 -----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
RI + YS S R L+ F+ KI +L+ SD ++RG+D+ VN+VV+YD P
Sbjct: 556 EDTSSRIVARAYSSDSPPSERKSILEDFKAQKIHILICSDLISRGIDISHVNHVVSYDAP 615
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIESL 427
I+ Y+HR GRTARAG+ G +TL+ + E FKK++++AD+ DS + + L
Sbjct: 616 VDIRKYVHRVGRTARAGREGDAWTLVEEQEAHYFKKMMKEADHLDSVKRLRVAETATAPL 675
Query: 428 RPVYKSG 434
P Y++
Sbjct: 676 EPFYEAA 682
>gi|410047553|ref|XP_003954509.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Pan troglodytes]
Length = 497
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 176/457 (38%), Positives = 251/457 (54%), Gaps = 48/457 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 48 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 107
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 108 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK----- 162
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 163 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 214
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ +E+ + F ++ C P L K++ SATL
Sbjct: 215 WLPRVVAAA-FQSEDPADPCALFQRRQAQAVTAASTCC--------PQMPLQKLLFSATL 265
Query: 232 TQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +Y P L + + C KPL
Sbjct: 266 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 325
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 326 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 383
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 384 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 443
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 444 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEA 480
>gi|426374738|ref|XP_004054220.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Gorilla gorilla
gorilla]
Length = 641
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 178/455 (39%), Positives = 250/455 (54%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 192 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 251
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 252 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK----- 306
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 307 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 358
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A L+ + V P L K++ SATL
Sbjct: 359 WLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATL 409
Query: 232 TQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +Y P L + + C KPL
Sbjct: 410 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDRDSGKYTFPVGLTHHYVPCSLNSKPLV 469
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 470 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 527
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 528 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 587
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 588 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 622
>gi|348688141|gb|EGZ27955.1| hypothetical protein PHYSODRAFT_258291 [Phytophthora sojae]
Length = 550
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 184/464 (39%), Positives = 250/464 (53%), Gaps = 47/464 (10%)
Query: 1 MGISSLFPVQ-VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
+ I S FPVQ VA+ + D+CI++PTGSGKTL+Y +PIVQ L R V +RA
Sbjct: 38 LSIRSFFPVQAVAIPKILASDSDRVTDICISAPTGSGKTLTYVVPIVQRLLPRVVCRVRA 97
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+VLP+RDLA+QV + L GLA+GQS+ A E S L+ E
Sbjct: 98 LIVLPSRDLAVQVHQIVQQFVKGTPLKCGLAIGQSNFAVEQSALVGDVSGE-----KVSS 152
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+S VDILVATPGRL+DH+ T GFTL+HL ++VDE DRLL ++YQ W+P V
Sbjct: 153 TTDGGRSLVDILVATPGRLVDHLEQTPGFTLQHLQIMIVDEADRLLNQSYQDWIPKVYAS 212
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRC-GVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
+ E D A G T RR + R P L +++LSATLT++P KL
Sbjct: 213 VFNGQE---VDEEGL---ALGVGVTCRRQDSINRRRIRTP---LTRVLLSATLTRNPRKL 263
Query: 239 AQLDLHHPLFLTTGE-------------------------------TRYKLPERLESYKL 267
A + + + G Y P LE Y +
Sbjct: 264 AAIGMSNAELTKIGRIDDPLADNAKQGTAGDSDDDDEDGEEASGSAKMYSTPTNLEEYWI 323
Query: 268 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 327
C++ KPL L+ LL IVFT+SV STHRL LL + +I+E+S Q
Sbjct: 324 ECDTGSKPLVLLELLSEFAGALSIVFTASVNSTHRLARLLQLYSTHPERIREFSSSLSQK 383
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
RS + F+ G+++ +V SDAM RGMD+E V NVVNYD P++IKTYIHR GRTARAG+
Sbjct: 384 QRSALVADFKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIHRVGRTARAGRH 443
Query: 388 GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 431
GRC TL+ ++K ++L+KADN+ + + +++L P Y
Sbjct: 444 GRCVTLVKMGQMKGMMRMLKKADNNKLKPYPLQQEHMKTLVPRY 487
>gi|154759257|ref|NP_778236.2| ATP-dependent RNA helicase DDX51 [Homo sapiens]
gi|229462978|sp|Q8N8A6.3|DDX51_HUMAN RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
Length = 666
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 177/455 (38%), Positives = 250/455 (54%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 217 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 276
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 277 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK----- 331
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 332 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 383
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A L+ + V P L K++ SATL
Sbjct: 384 WLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATL 434
Query: 232 TQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +Y P L + + C KPL
Sbjct: 435 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 494
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 495 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 552
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 553 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 612
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 613 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 647
>gi|410976432|ref|XP_003994624.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Felis catus]
Length = 538
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 253/478 (52%), Gaps = 62/478 (12%)
Query: 2 GISSLFPVQVAV----WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV + T L R DLC+++PTGSGKTL++ +P+VQ L
Sbjct: 57 GISSYFPVQAAVIPALLESTANGFLVARGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLC 116
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF A L V L GQ S+ E L++R
Sbjct: 117 RAVCQVRALVVLPTKELAQQVSKVFNVYTDATPLRVALITGQKSLVKEQETLVQR----- 171
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ D++VATPGRL+DHI+ T GF+L HL +LV+DE DR++ +Q+
Sbjct: 172 --------TADGFRCLADVVVATPGRLVDHIDQTPGFSLRHLRFLVIDEADRMIDSMHQS 223
Query: 172 WLPTVLQLTRSDNENR-------------FSDASTFLPSAFGSLKTIRRCGVERGFKDK- 217
WLP V++ + + + A LP + + C ++G +
Sbjct: 224 WLPRVVEAAFPSDSAKDPCALLQRRQLRATTAARPALPWRVPGGQVQQVCRPDQGRRPTA 283
Query: 218 --------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-------------- 255
P L K++ SATLTQ+P KL QL LH P +TG R
Sbjct: 284 RSPSSTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLARGGPKDADADGDSGG 343
Query: 256 -YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
Y P L + C + KPL ++ L+ + + + FT+S E++HRL L+ FG
Sbjct: 344 KYTFPAGLSHCYVPCSLRTKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGG-- 401
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
+ E+S R LK F +GKI++L+S+DA RG+D++GV VVNYD P Y++TY
Sbjct: 402 VTAAEFSSRCGPGQRKAVLKQFEQGKIRLLISTDATARGIDMQGVQLVVNYDAPQYLRTY 461
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+HR GRTARAG+ GR FTLL K + +RF ++L +A H IP L+ L P Y+
Sbjct: 462 VHRVGRTARAGRTGRAFTLLLKVQERRFLRMLAEAGAPELARHDIPGELLRPLVPRYE 519
>gi|397487104|ref|XP_003814650.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Pan paniscus]
Length = 529
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 175/455 (38%), Positives = 250/455 (54%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GIS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 80 GISFYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 139
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 140 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATSLRVSLVTGQKSLAKEQESLVQK----- 194
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 195 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 246
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ +E+ + F ++ C P L K++ SATL
Sbjct: 247 WLPRVVAAA-FQSEDPADPCALFQRRQAQAVTAASTCC--------PQMPLQKLLFSATL 297
Query: 232 TQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +Y P L + + C KPL
Sbjct: 298 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 357
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 358 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 415
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 416 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 475
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 476 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 510
>gi|355683374|gb|AER97086.1| DEAD box polypeptide 51 [Mustela putorius furo]
Length = 474
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 176/458 (38%), Positives = 247/458 (53%), Gaps = 49/458 (10%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV E+ G RDLC+++PTGSGKTL++ +P+VQ L
Sbjct: 26 GISSYFPVQAAVIPALLESTADGFLVARGGYRPRDLCVSAPTGSGKTLAFVIPVVQALLG 85
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RA+ +RALVVLPT++LA QV VF A L V L GQ S+ E L+++
Sbjct: 86 RAICQVRALVVLPTKELAQQVCKVFNIYTDATPLRVALITGQKSLVKEQESLVQK----- 140
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ D++VATPGRL+DHI+ T GF+L HL +LV+DE DR++ +Q+
Sbjct: 141 --------TADGFRCLADVVVATPGRLVDHIDQTPGFSLLHLRFLVIDEADRMIDSMHQS 192
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V++ + + F L+ + P L K++ SATL
Sbjct: 193 WLPRVVEAAFPSDGAK---------DPFVLLQRRQPQAPTAASISCPQMPLQKLLFSATL 243
Query: 232 TQDPNKLAQLDLHHPLFLTTGETR---------------YKLPERLESYKLICESKLKPL 276
TQ+P KL QL LH P +TG R Y P L + + C + KPL
Sbjct: 244 TQNPEKLQQLGLHQPWLFSTGLARRDPGDSDADRDSGGKYAFPAGLSHHYVPCSLRTKPL 303
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
++ L+ + + FT+S E++HRL L+ FG + E+S R LK F
Sbjct: 304 AILHLILEKNFSRVLCFTNSRENSHRLFLLVQAFGG--VTAAEFSSRCGPGQRKAVLKQF 361
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 362 EQGKIQLLISTDATARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGRTGQAFTLLLK 421
Query: 397 DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
+ +RF ++L +A IPS L++ L P Y+
Sbjct: 422 VQERRFLRMLAEAGVPDMTRQDIPSELLQPLVPRYEEA 459
>gi|345314845|ref|XP_001512662.2| PREDICTED: ATP-dependent RNA helicase DDX51, partial
[Ornithorhynchus anatinus]
Length = 652
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 179/451 (39%), Positives = 252/451 (55%), Gaps = 42/451 (9%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + RD+C+++PTGSGKTLS+ +P+VQ LS
Sbjct: 217 GISSYFPVQAAVIPVVLESATHGFLVGRGGYRPRDICVSAPTGSGKTLSFVIPVVQVLSE 276
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF L V L GQ +A E L++ E
Sbjct: 277 RAVCHVRALVVLPTKELAQQVSKVFHTYTEQTALRVALITGQKPLAKEQELLVQ----ET 332
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
Y +S DI+VATPGRL+DHI+ T GF+L L +LV+DE DR++ Q+
Sbjct: 333 DTGY---------RSLADIVVATPGRLVDHIDQTPGFSLRQLRFLVIDEADRMIDSMQQS 383
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ + +A G + C +P L K++ SATL
Sbjct: 384 WLPRVMAAVFGGTGSG-GPGELLQRTAPGVITAASSC--------RPQMPLQKLLFSATL 434
Query: 232 TQDPNKLAQLDLHHP-LFLTTG-------ETRYKLPERLESYKLICESKLKPLYLVALLQ 283
T++P KL QL L+ P LF TTG + +Y P L Y + C KP+ ++ LL
Sbjct: 435 TRNPEKLQQLGLYQPRLFSTTGTREGPAGDGKYTFPAGLSHYYVPCSLSSKPMLVLHLLH 494
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ + FT+S E++HRL L+ FG +K+ E+S R LK F +GKIQ+
Sbjct: 495 QEDFPRVLCFTNSRENSHRLFLLIQAFGG--VKVAEFSSRFGPGQRKLILKQFEQGKIQL 552
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
L+S+DA RG+DVEGV V+NYD P YI++Y+HR GRTARAG+ G +T L K + ++F
Sbjct: 553 LISTDATARGIDVEGVKLVINYDAPHYIRSYVHRVGRTARAGRTGLAYTFLLKVQEQKFL 612
Query: 404 KLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
++L++A + + I L+E L P Y++
Sbjct: 613 RMLREAGAPALQPYPIRRELLEPLVPQYQAA 643
>gi|51467974|ref|NP_001003864.1| ATP-dependent RNA helicase DDX51 [Danio rerio]
gi|82200454|sp|Q6DRI7.1|DDX51_DANRE RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
gi|49619011|gb|AAT68090.1| DEAD/H box 51 RNA helicase [Danio rerio]
Length = 652
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 175/451 (38%), Positives = 246/451 (54%), Gaps = 45/451 (9%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS
Sbjct: 208 GIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSK 267
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R VR +RAL VLPT++LA QV +VF+A L V + GQ S A E + L ++
Sbjct: 268 RVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRG 324
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G+ + S DI+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+
Sbjct: 325 GVSH----------SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQS 374
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V + S + S F + G + P L K++ SATL
Sbjct: 375 WLSQVTKAVYSTPGE--THTSVFRRTVPGPITAASLS--------PPQIPLQKLLFSATL 424
Query: 232 TQDPNKLAQLDLHHP-LFLTT---------GETRYKLPERLESYKLICESKLKPLYLVAL 281
TQ+P KL LDLH P LF +T + + P+ L Y + C KPL ++
Sbjct: 425 TQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHF 484
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
L L + FT+S E HRL L+ FG +++ E+S R KTLK F +GKI
Sbjct: 485 LLRLKFSPALCFTNSREGAHRLYLLVKLFGG--VEVAEFSSKLSPGERQKTLKDFEKGKI 542
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+L+S+DA RG+D+ GV V+NYD P YI+TYIHR GRTARAG+ G FT L K + KR
Sbjct: 543 PLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKR 602
Query: 402 FKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
F K++ A + + ++S+ Y+
Sbjct: 603 FLKMVSDAGSPGIQKQHVHPEALKSMESRYE 633
>gi|403292279|ref|XP_003945289.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Saimiri boliviensis boliviensis]
Length = 553
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 177/455 (38%), Positives = 252/455 (55%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 104 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 163
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 164 RVVCHVRALVVLPTKELAQQVSKVFNIYTDATPLRVSLITGQKSLAKEQDSLVQK----- 218
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 219 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 270
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A L+ + V P L K++ SATL
Sbjct: 271 WLPRVVAAA-------FQSEDPAEPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATL 321
Query: 232 TQDPNKLAQLDLHHPLFLTTG-------ET-------RYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG ET +Y P L + + C KPL
Sbjct: 322 TQNPEKLQQLGLHQPRLFSTGLAHRGPEETDGDRESGKYAFPAGLTHHYVPCSLSSKPLV 381
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 382 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRKAILKQFE 439
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL +
Sbjct: 440 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLRV 499
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L ++ H + S L++ L P Y+
Sbjct: 500 QERRFLRMLAESGAPELQRHELSSKLLQPLVPKYE 534
>gi|21756727|dbj|BAC04942.1| unnamed protein product [Homo sapiens]
gi|326205429|dbj|BAJ84089.1| ATP-dependent RNA helicase DDX51 [Homo sapiens]
Length = 666
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 176/455 (38%), Positives = 249/455 (54%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 217 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 276
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+ E L+++
Sbjct: 277 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLVKEQESLVQK----- 331
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 332 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 383
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A L+ + V P L K++ SATL
Sbjct: 384 WLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATL 434
Query: 232 TQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +Y P L + + C KPL
Sbjct: 435 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 494
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 495 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 552
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 553 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 612
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 613 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 647
>gi|296213300|ref|XP_002753212.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Callithrix jacchus]
Length = 797
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 178/455 (39%), Positives = 251/455 (55%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 218 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 277
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 278 RVVCHVRALVVLPTKELAQQVSRVFNIYTDATPLRVSLVTGQKSVAKEQESLVQK----- 332
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 333 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 384
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A L+ + V P L K++ SATL
Sbjct: 385 WLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATL 435
Query: 232 TQDPNKLAQLDLHHPLFLTTG-------ET-------RYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG ET +Y P L + + C KPL
Sbjct: 436 TQNPEKLQQLGLHQPRLFSTGLAHRGPEETGGDRESGKYAFPVGLTHHYVPCSLSSKPLV 495
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 496 ILHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRAILKQFE 553
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 554 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 613
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A + H +P L+ L Y+
Sbjct: 614 QERRFLRMLAEAGAPALQRHELPGKLLRPLVSRYE 648
>gi|440909766|gb|ELR59643.1| ATP-dependent RNA helicase DDX51, partial [Bos grunniens mutus]
Length = 542
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/457 (37%), Positives = 248/457 (54%), Gaps = 53/457 (11%)
Query: 2 GISSLFPVQVAV--WQETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNR 52
GISS FP A+ W G DLC+++PTGSGKTL++ +P+VQ L +R
Sbjct: 94 GISSYFPGAPALGRWTGDGANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLHR 153
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
AV +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 154 AVCQVRALVVLPTKELAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQK------ 207
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+ DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+W
Sbjct: 208 -------TADGFRCLADIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSW 260
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
LP V+ R + F + L C P L K++ SATLT
Sbjct: 261 LPRVVAAAFPSEGPR-DPCAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATLT 311
Query: 233 QDPNKLAQLDLHHPLFLTTGET-----------------RYKLPERLESYKLICESKLKP 275
Q+P KL QL L+ P +TG +Y P L+ + + C + KP
Sbjct: 312 QNPEKLQQLGLYQPRLFSTGSAHRGPSDPDIDVDEDSGGKYTFPTGLKHHYVPCSLRFKP 371
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
L ++ L+ + + + FT+S E++HRL + FG + + E+S R LK
Sbjct: 372 LVILHLILEMNFSRVLCFTNSRENSHRL---VQAFGG--VTVAEFSSRYGPGQRKGILKQ 426
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F +GKIQ+L+S+DAM RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 427 FEQGKIQLLISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLLL 486
Query: 396 KDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K + +RF ++L++ H PS L++ L P Y+
Sbjct: 487 KVQERRFLRMLEEGGVPGLERHDTPSELLQPLVPQYE 523
>gi|392564142|gb|EIW57320.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 682
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 187/485 (38%), Positives = 264/485 (54%), Gaps = 63/485 (12%)
Query: 1 MGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
+GI+ LF VQ AV Q P DLC+++PTGSGKTL+Y LPIV+ LS
Sbjct: 198 LGIAELFAVQTAVVPLLLSSTRAQSLYRPYDPPEDLCVSAPTGSGKTLAYVLPIVEVLSA 257
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V LRAL+VLPTRDL +QV++ F A+A GL +G A GQ S A E S+L+ E
Sbjct: 258 RIVTRLRALIVLPTRDLVVQVRETFEAVAKGRGLKIGTATGQHSFAHEQSQLV----AER 313
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G LQ S VD+L+ TPGRLMDHI T F+L+HL +LV+DE DRLL +++Q
Sbjct: 314 G------SDLQGGSSKVDVLICTPGRLMDHITGTPNFSLQHLRFLVIDEADRLLAQSFQD 367
Query: 172 WLPTVLQLTRS--DNENRFSDAST------------FLPSAFGSLKTIRRCGVER-GFKD 216
WL VL +TR +++ S+AST L AF L +R R +
Sbjct: 368 WLAQVLAVTRPPRPSDDTRSEASTPPSHTTPRPHPDALAPAF--LHLLRGAPYTRTDIDE 425
Query: 217 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---------TTGE--------TRYKLP 259
+ P K++ SATLT+DP K+A L L P ++ T E ++ +P
Sbjct: 426 RKEPSCQKLLFSATLTRDPAKIAALGLRAPRYIVVQGRKSAAATKEEGVLDFVMEKFTMP 485
Query: 260 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELR---- 314
L + L+CES KPL L ++ + G +VFT S ES RL L F G LR
Sbjct: 486 ATLTEHMLVCESAAKPLMLFHMVHARGVTNALVFTKSAESATRLVRLFEFFEGALRAADA 545
Query: 315 ----IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
+ + YS R L+ FR +I +L+ SD ++RG+D+ V++VV+YD P
Sbjct: 546 SKKPVVARAYSSDLAPGERKAILEQFRNQEINILICSDLVSRGIDISHVSHVVSYDVPVD 605
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIESLRP 429
+ Y+HR GRTARAG+ G +TL+ + E + FK +L++AD+ + + S + SL+P
Sbjct: 606 FRKYVHRVGRTARAGREGDAWTLVEEQEARYFKGMLKEADHLEKVKRLRVSDSDVASLKP 665
Query: 430 VYKSG 434
Y++
Sbjct: 666 AYETA 670
>gi|326929902|ref|XP_003211092.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Meleagris
gallopavo]
Length = 582
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 179/463 (38%), Positives = 257/463 (55%), Gaps = 57/463 (12%)
Query: 2 GISSLFPVQV----AVWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ AV Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +
Sbjct: 130 GIESFFPVQAEVIPAVLQSASNGYLMGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLD 189
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF GL V L GQ S A E L++ K
Sbjct: 190 RVVCQVRALVVLPTKELAQQVGKVFNIYTDGTGLKVVLITGQKSFAKEQEMLVQ--KKVT 247
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G C S DI+VATPGRL DHI+ T GF+L L +L++DE DR++ + +Q
Sbjct: 248 GYC-----------SLADIIVATPGRLADHISKTPGFSLTQLRFLIIDEADRMIDDMHQN 296
Query: 172 WLPTVLQLT-RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR--LVKMVLS 228
WL V++ +++NE+ + F + G + C YP+ L K++ S
Sbjct: 297 WLNQVVKAAFQAENED--GSNTLFQRTKPGPVTAAGCC----------YPQIPLQKLLFS 344
Query: 229 ATLTQDPNKLAQLDLHHPLFLTT-----------------GETRYKLPERLESYKLICES 271
ATLTQDP KL QL L P T+ E +Y LPE L + C+
Sbjct: 345 ATLTQDPEKLQQLGLFQPCLFTSVYSEKKPLRDGTETEQDSEEKYTLPEELSQSYVPCDL 404
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 331
KPL L+ + + + + FT+S E++HRL L+ FG I + E+S + R +
Sbjct: 405 NSKPLLLLHFMLTKKFTRVLCFTNSREASHRLFLLVQAFG--GITVAEFSSRLPPNERKR 462
Query: 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
TLK F +GKIQ+L+S+DA RG+D++GVN V+NYD P +I+TYIHR GRTARAG+ G F
Sbjct: 463 TLKEFEQGKIQLLISTDATARGIDIKGVNCVINYDTPQFIRTYIHRVGRTARAGKAGLAF 522
Query: 392 TLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
+++ + + +RF ++L+ A H + L++ L Y+
Sbjct: 523 SMVLRIQERRFLRMLKDAGIPDIKQHLVKGKLLKPLVQQYEEA 565
>gi|441630929|ref|XP_004093170.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Nomascus leucogenys]
Length = 684
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 175/455 (38%), Positives = 250/455 (54%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 127 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 186
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 187 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK----- 241
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 242 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 293
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ +E+ + F ++ C P L K++ SATL
Sbjct: 294 WLPRVVAAA-FQSEDSADPCALFQRRQAQAVTAASTC--------CPQMPLQKLLFSATL 344
Query: 232 TQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +Y P L + + C KPL
Sbjct: 345 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 404
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK
Sbjct: 405 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPXQRRMILKQXE 462
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 463 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 522
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 523 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 557
>gi|395513523|ref|XP_003760973.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Sarcophilus harrisii]
Length = 668
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 175/460 (38%), Positives = 254/460 (55%), Gaps = 56/460 (12%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ AV +G G ++ D+C+++PTGSGKTLS+ +P++Q L
Sbjct: 219 GILSYFPVQAAVIPALLESASHGFLVGKGGYQPSDICVSAPTGSGKTLSFVIPVIQVLLE 278
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A GL V GQ S+A E L++ K ++
Sbjct: 279 RVVCHIRALVVLPTKELAQQVSKVFNVYADGTGLRVAQITGQKSLAKEQEILVQ--KTDS 336
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G S DI+VATPGRL+DHI+ T GF+L L +L++DE DR++ +Q+
Sbjct: 337 G-----------YHSLADIVVATPGRLVDHIDQTPGFSLRQLRFLIIDEADRMIDSMHQS 385
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLS 228
WLP V++ ++ A GS RR + +P L K++ S
Sbjct: 386 WLPRVVKAVFHGDD------------APGSSPLFRRVEPRAITAASTSQPQMPLQKLLFS 433
Query: 229 ATLTQDPNKLAQLDLHHPLFLTTG----------------ETRYKLPERLESYKLICESK 272
ATLT++P KL +L L+ P +TG E +Y P L + + C
Sbjct: 434 ATLTRNPEKLQELGLYQPRLFSTGLESQESTVQPGIEQDVEGKYAFPAGLSHFYVPCSLN 493
Query: 273 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 332
KPL ++ L+++L + + FT+S E +HRL L+ FG I + E+S R
Sbjct: 494 SKPLVILHLMRNLKFSRVLCFTNSREHSHRLFLLVKAFGG--IPVAEFSSRFGPGQRKMI 551
Query: 333 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
LK F +GKIQ+L+S+DA RG+DV+GV V+NYD P YI+TY+HR GRTARAG G FT
Sbjct: 552 LKQFEQGKIQLLISTDATARGIDVKGVKLVINYDAPQYIRTYVHRVGRTARAGHTGLAFT 611
Query: 393 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
LL K + ++F ++L++A H + + ++SL P Y+
Sbjct: 612 LLLKVQEQKFLQMLREARAPELGKHLVRNEHLKSLVPQYE 651
>gi|351698593|gb|EHB01512.1| ATP-dependent RNA helicase DDX51, partial [Heterocephalus glaber]
Length = 536
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 177/458 (38%), Positives = 246/458 (53%), Gaps = 51/458 (11%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 90 GISSYFPVQAAVIPALLENAASGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 149
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALV+LPT++LA QV VF A L V L GQ +A E L+++
Sbjct: 150 RVVCHVRALVMLPTKELAQQVSKVFNIYTDATPLRVALVTGQKPLATEQESLVQK----- 204
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHIN T GF+L+ L +LVVDE DR++ +Q+
Sbjct: 205 --------TADGFRCLADIVVATPGRLVDHINQTPGFSLQQLRFLVVDEADRMIDSMHQS 256
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ P A L+ R V P L K++ SATL
Sbjct: 257 WLPRVMAAA-------LPSKGPADPCAL--LQRWRPQAVTAASACCPQMPLQKLLFSATL 307
Query: 232 TQDPNKLAQLDLHHPLFLTT-----------------GETRYKLPERLESYKLICESKLK 274
TQ+P KL QL L+ P +T E +Y P L + + C K
Sbjct: 308 TQNPEKLQQLGLYQPRLFSTRLAHRVPKDEGTEVDRDPEGKYTFPAGLTHHYVPCSLSSK 367
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL ++ L+ + + FT+S E++HRL LL FG + + E+S R K LK
Sbjct: 368 PLAIMHLVVGKNFSRALCFTNSRENSHRLFLLLQAFGG--VSVAEFSSRYGPGHRRKVLK 425
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +GKIQ+L+S+DA RG+DV GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 426 QFEQGKIQLLISTDATARGIDVLGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLL 485
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K + + F ++L + H IPS L++ L P Y+
Sbjct: 486 LKVQERTFLRMLAEGGAPELARHEIPSKLLQPLVPRYE 523
>gi|417411466|gb|JAA52168.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 535
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 178/460 (38%), Positives = 250/460 (54%), Gaps = 53/460 (11%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G ++ RDLC+++PTGSGKTL++ LP+VQ L
Sbjct: 85 GISSYFPVQAAVIPAVLESAANGFLVGRGGYQPRDLCVSAPTGSGKTLAFVLPVVQALLW 144
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 145 RAVCHVRALVVLPTKELAQQVSRVFNVYTDATPLRVALVTGQKSLAKEQETLVQK----- 199
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L L +LV+DE DR++ +Q+
Sbjct: 200 --------TADGFRCLADIVVATPGRLVDHIDQTPGFSLRQLRFLVIDEADRMMDSMHQS 251
Query: 172 WLPTVLQ--LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
WLP V+ R ++ + P A + T P L K++ SA
Sbjct: 252 WLPRVVAAAFPREGAQDPCALLQRRQPQAVTAASTC-----------SPQMPLQKLLFSA 300
Query: 230 TLTQDPNKLAQLDLHHPLFLTTGETR---------------YKLPERLESYKLICESKLK 274
TLTQ+P KL QL L+ P +T R Y P L + + C + K
Sbjct: 301 TLTQNPEKLQQLGLYQPRLFSTQPARGGPGDADADVGSGAKYTFPSGLSHHYVPCSLQAK 360
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL ++ L+ L + + FT+S E+ HRL L+ FG + + E+S R LK
Sbjct: 361 PLVILHLILHLSFSRVLCFTNSRENAHRLFLLVQAFGG--VAVAEFSSRYGPGWRKMILK 418
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +GKIQ+L+S+DA RG+DV GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 419 QFEQGKIQLLISTDATARGIDVRGVQLVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLL 478
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
K + ++F ++L +A H P+ L++ L P Y++
Sbjct: 479 LKVQERKFLRMLTEAGAPELQRHDAPTELLQPLVPRYEAA 518
>gi|118098682|ref|XP_415229.2| PREDICTED: ATP-dependent RNA helicase DDX51 [Gallus gallus]
Length = 764
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 179/460 (38%), Positives = 252/460 (54%), Gaps = 55/460 (11%)
Query: 2 GISSLFPVQV----AVWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ AV Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +
Sbjct: 312 GIESFFPVQAEVIPAVLQSASNGYLVGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLD 371
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF GL V L GQ S A E L++ K
Sbjct: 372 RVVCQVRALVVLPTKELAQQVSKVFNIYTDGTGLKVVLITGQKSFAKEQEMLVQ--KKVT 429
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G C S DI+VATPGRL DHI+ T GF+L L +L+VDE DR++ + +Q
Sbjct: 430 GYC-----------SLADIIVATPGRLADHISKTPGFSLTQLRFLIVDEADRMIDDMHQN 478
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR--LVKMVLSA 229
WL V++ EN F + G + C YP+ L K++ SA
Sbjct: 479 WLNQVVKAA-FQAENEAGSNMLFQRTKPGPVTAASCC----------YPQIPLQKLLFSA 527
Query: 230 TLTQDPNKLAQLDLHHPLFLTT-----------------GETRYKLPERLESYKLICESK 272
TLTQDP KL QL L P T+ E +Y LPE L + C+
Sbjct: 528 TLTQDPEKLQQLGLFQPRLFTSVYSEKKTLRDGTETKEDCEEKYTLPEGLSQSYVPCDLN 587
Query: 273 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 332
KPL L+ + + + + FT+S E++HRL L+ FG I + E+S + R +T
Sbjct: 588 SKPLLLLHFMLTKKFTRVLCFTNSREASHRLFLLVQAFGG--ITVAEFSSRLPPNERQRT 645
Query: 333 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
+K F +GKIQ+L+S+DA RG+D++GVN V+NYD P +I+TYIHR GRTARAG+ G F+
Sbjct: 646 MKEFEQGKIQLLISTDATARGIDIKGVNCVINYDTPQFIRTYIHRVGRTARAGKAGLAFS 705
Query: 393 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
++ + + +RF ++L+ A H + L++ L Y+
Sbjct: 706 MVLRIQERRFLRMLKDAGIPDIKQHLVKGKLLKPLVQQYE 745
>gi|301117032|ref|XP_002906244.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262107593|gb|EEY65645.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 564
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 183/464 (39%), Positives = 253/464 (54%), Gaps = 47/464 (10%)
Query: 1 MGISSLFPVQ-VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
+ I S FPVQ VA+ + D+CI++PTGSGKTL+Y +PIVQ L R V +RA
Sbjct: 40 LNIRSFFPVQAVAIPKILASDSDRVTDICISAPTGSGKTLTYVVPIVQRLLPRVVCRVRA 99
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+VLP+RDLA+QV + L GLA+GQS+ A E + L+ I
Sbjct: 100 LIVLPSRDLAVQVHQIVQQFVQGTPLKCGLAIGQSNFAAEQNALVGATSGNKVIATTDGG 159
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+S VDILVATPGRL+DH+ T GFTL+HL ++VDE DRLL ++YQ W+ V
Sbjct: 160 -----RSLVDILVATPGRLVDHLEQTPGFTLQHLQIMIVDEADRLLNQSYQDWISKVYAS 214
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRC-GVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
+ E D T G T RR + R P L +++LSATLT++P KL
Sbjct: 215 VFNGQEVD-EDGLTL-----GVGVTCRRQDSINRRRIRTP---LTRVLLSATLTRNPRKL 265
Query: 239 AQLDLHH-----------PL-------------------FLTTGETR-YKLPERLESYKL 267
A + + + PL TG + Y P L+ Y +
Sbjct: 266 AAIGMSNAELTKIGRIDDPLADNAKLGNAGDSDDEDEDGDEATGSKKMYSTPTNLDEYWI 325
Query: 268 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 327
C++ KPL L+ LL IVFT+SV STHRL LL + +I+E+S Q
Sbjct: 326 ECDTGSKPLVLLELLSEFAGSLSIVFTASVNSTHRLARLLQLYSTHPERIREFSSSLSQK 385
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
RS + + G+++ +V SDAM RGMD+E V NVVNYD P++IKTYIHR GRTARAG+
Sbjct: 386 QRSSLVADCKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIHRVGRTARAGRH 445
Query: 388 GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 431
GRC TL+ ++K ++L+KADN+ +++ +++L P Y
Sbjct: 446 GRCVTLVKLGQMKSMMRMLKKADNNKLKPYALQQEHMKTLVPRY 489
>gi|354479142|ref|XP_003501772.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Cricetulus
griseus]
Length = 552
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 172/456 (37%), Positives = 250/456 (54%), Gaps = 49/456 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 102 GISSYFPVQAAVIPALLESTDSGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 161
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 162 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVALVTGQKSLAKEQESLVQK----- 216
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ + DILVATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 217 --------TVDGYRCLADILVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 268
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ +E + + ++ T C F P L K++ SATL
Sbjct: 269 WLPRVVAAA-FHSEGPSGSCALLQRTQPQAVTTASTC-----FPQMP---LQKLLFSATL 319
Query: 232 TQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKLKPL 276
TQ+P KL +L L+ P +T +Y P L + + C KPL
Sbjct: 320 TQNPEKLQRLGLYQPRLFSTRLGHKGPKDTVEVDENLGKYTFPVGLTHHYVPCRLSSKPL 379
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
++ L+ + + + FT+S E +HRL L FG + + E+S R K LK F
Sbjct: 380 IVLHLVLGMNFSRALCFTNSREHSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKKILKQF 437
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 438 EQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK 497
Query: 397 DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ ++F +++ +A H IP L++ L Y+
Sbjct: 498 VQERKFLQMVSEAGVPELACHEIPRELLQPLVSRYE 533
>gi|344246330|gb|EGW02434.1| ATP-dependent RNA helicase DDX51 [Cricetulus griseus]
Length = 605
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 172/456 (37%), Positives = 250/456 (54%), Gaps = 49/456 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 155 GISSYFPVQAAVIPALLESTDSGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 214
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 215 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVALVTGQKSLAKEQESLVQK----- 269
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ + DILVATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 270 --------TVDGYRCLADILVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 321
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ +E + + ++ T C F P L K++ SATL
Sbjct: 322 WLPRVVAAA-FHSEGPSGSCALLQRTQPQAVTTASTC-----FPQMP---LQKLLFSATL 372
Query: 232 TQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKLKPL 276
TQ+P KL +L L+ P +T +Y P L + + C KPL
Sbjct: 373 TQNPEKLQRLGLYQPRLFSTRLGHKGPKDTVEVDENLGKYTFPVGLTHHYVPCRLSSKPL 432
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
++ L+ + + + FT+S E +HRL L FG + + E+S R K LK F
Sbjct: 433 IVLHLVLGMNFSRALCFTNSREHSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKKILKQF 490
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 491 EQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK 550
Query: 397 DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ ++F +++ +A H IP L++ L Y+
Sbjct: 551 VQERKFLQMVSEAGVPELACHEIPRELLQPLVSRYE 586
>gi|409048731|gb|EKM58209.1| hypothetical protein PHACADRAFT_171465 [Phanerochaete carnosa
HHB-10118-sp]
Length = 681
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 171/458 (37%), Positives = 247/458 (53%), Gaps = 57/458 (12%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER--------DLCINSPTGSGKTLSYALPIVQTLSNR 52
+GI+ LF VQ AV + R D+C+++PTGSGKTL+Y LPIV+ LS+R
Sbjct: 200 LGITELFAVQTAVIPFLMSDQKQRRLYLHDPPHDICVSAPTGSGKTLAYVLPIVELLSSR 259
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
+ LRAL+VLPTRDL QV++ F A+A L +G A GQ S A E S+L+ L
Sbjct: 260 VITRLRALIVLPTRDLVTQVRETFEALAKGRSLKIGTATGQHSFAHEQSQLVADRTLR-- 317
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
LQ S +DIL+ TPGRL+DH+N T F+L+HL +LV+DE D+LL +++Q W
Sbjct: 318 --------LQGGSSKIDILICTPGRLIDHLNGTPNFSLQHLRFLVIDEADKLLAQSFQDW 369
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG------------VERGFKDKPYP 220
L VL TR D + + S+ S+ T V F +
Sbjct: 370 LARVLSATRPSEIPTSPDLVSGVASSTDSIPTPDGLAPAFLHIFHGIPHVRTDFDEPKET 429
Query: 221 RLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETR----------------YKLPERLE 263
K++ SATLT+DP+K+A L+L P F+ G +R + +P L
Sbjct: 430 SCQKLLFSATLTRDPSKIAALNLRDPKYFVVQGSSREIATQQEGVLDLVMEKFNMPATLL 489
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE---- 319
+ ++CES KPL L L+ + G + +VFT S EST RL L F RI E
Sbjct: 490 EHMIVCESSQKPLVLFHLVHTHGVKNALVFTKSAESTARLVKLFEFFELSRISSTEQQGS 549
Query: 320 ------YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
YS S R + L F+ + +LV SD ++RG+D+ V++VV+YD P ++
Sbjct: 550 AIVLSAYSSDLAPSARKEILDKFKNQETHILVCSDLISRGIDISHVSHVVSYDAPVDMRK 609
Query: 374 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
Y+HR GRTARAG+ G +TL+ + E + FK +L++A++
Sbjct: 610 YVHRVGRTARAGRTGDAWTLIEEQEARHFKNMLKEANH 647
>gi|393245833|gb|EJD53343.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 522
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 181/463 (39%), Positives = 249/463 (53%), Gaps = 55/463 (11%)
Query: 1 MGISSLFPVQVAVWQETIG--------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
+GI LF +Q A+ + P RD+C ++PTGSGKTL+Y LP+ + L+ R
Sbjct: 71 LGIRELFAIQTALVPHLLAKPTRALYLPYSPPRDVCASAPTGSGKTLAYVLPLAELLAMR 130
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
AV LRAL+VLPTRDL QV++VF A+A GL VG G +S A E ++L+ +
Sbjct: 131 AVPRLRALIVLPTRDLVAQVREVFEAVAKGAGLRVGSVTGAASFAHEKAQLVDK------ 184
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+S VD+LV TPGRL+DH++ T GFTL+HL +LV+DE DRLL +++Q W
Sbjct: 185 ----------RGESKVDVLVCTPGRLIDHLDGTEGFTLQHLRFLVIDEADRLLTQSFQDW 234
Query: 173 LPTVLQL-----TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 227
L VL T S A +FLP F S + R F+ P P KM+L
Sbjct: 235 LARVLSAITPPSTPSSTLPSRPVAPSFLPHPFASAGSNLRP----DFEPPPRPSCQKMLL 290
Query: 228 SATLTQDPNKLAQLDLHHPLFLTTG--------ETRYKLPERLESYKLICESKLKPLYLV 279
SATLT+DP +LA L LHHP + E +PE L+ + + KPL L
Sbjct: 291 SATLTRDPGRLAALGLHHPQYFVVSSSGGAAAPEEFGAVPEGLDERFCVIDPAEKPLVLA 350
Query: 280 ------ALLQSLGEEK--CIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRS 330
LL + GEEK +VF SVE+ RL LL ++ + YS +S+
Sbjct: 351 WILREHVLLAAGGEEKKQVLVFCKSVEAATRLGVLLAAMLADVGKSVASYSSDAPRSL-- 408
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
L+ FR G + VLV SD ++RG+DV V V+NYD P + Y+HR GRTARAG+ G
Sbjct: 409 --LERFRTGAVDVLVCSDLVSRGLDVPSVAAVLNYDAPVDARKYVHRVGRTARAGRRGDA 466
Query: 391 FTLLHKDEVKRFKKLLQKAD-NDSCPIHSIPSSLIESLRPVYK 432
+T++ E + FK+LL A D + ++E LRP Y+
Sbjct: 467 WTMVEGQEARHFKELLAAAGRTDRVKKVRVAEKVLEPLRPAYE 509
>gi|148688064|gb|EDL20011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Mus musculus]
Length = 639
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 171/461 (37%), Positives = 250/461 (54%), Gaps = 55/461 (11%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI+S FPVQ AV IG G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 189 GITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 248
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF L V L GQ S+A E L+++
Sbjct: 249 RVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK----- 303
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 304 --------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 355
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLS 228
WLP V+ A+ + GS ++R V P L K++ S
Sbjct: 356 WLPRVVA------------AAFYSEGPTGSCALLQRTQPQAVTAASTCVPQMPLQKLLFS 403
Query: 229 ATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKL 273
ATLTQDP KL +L L+ P +T +Y P L + + C
Sbjct: 404 ATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSS 463
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333
KPL ++ L+ + + + FT+S E++HRL L FG + + E+S R K L
Sbjct: 464 KPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKIL 521
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
K F +GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTL
Sbjct: 522 KQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTL 581
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
L K + ++F +++ +A H IP L++ L Y++
Sbjct: 582 LLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETA 622
>gi|224072122|ref|XP_002196880.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Taeniopygia
guttata]
Length = 707
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 178/454 (39%), Positives = 248/454 (54%), Gaps = 52/454 (11%)
Query: 2 GISSLFPVQV----AVWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ A+ Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +
Sbjct: 257 GIDSFFPVQAEVIPAILQSAANGYLLGRGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLD 316
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF GL V L GQ S A E L++ K
Sbjct: 317 RVVCHVRALVVLPTKELAQQVSKVFNIYTDGTGLKVVLITGQKSFAKEQEMLVE--KKVT 374
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G C S DI+VATPGRL DHIN T GF+L L +LVVDE DR++ + +Q
Sbjct: 375 GYC-----------SLADIVVATPGRLTDHINQTPGFSLTQLRFLVVDEADRMIDDMHQN 423
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
L +++ EN F + G L C P L K++ SATL
Sbjct: 424 CLNQIVKAA-FQGENSSGSNMLFQRTKPGPLTAASSCS--------PQIPLQKLLFSATL 474
Query: 232 TQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKLKPL 276
TQDP KL QLDL P T+ +Y LPE L + C+ KPL
Sbjct: 475 TQDPEKLQQLDLFQPRLFTSVYSEKNRDGTETEQDTTNKYTLPEGLSQCYVPCDLNSKPL 534
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
L+ + + + + FT+S E++HRL L+ FG I + E+S + R +T+K F
Sbjct: 535 LLLYFMLKMKFTRVLCFTNSREASHRLFLLVQAFGG--ITVAEFSSRLTPNERKRTMKEF 592
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+GKIQ+L+S+DA RG+DV+ VN V+NYD P +I+TY+HR GRTARAG+ G F+L+ +
Sbjct: 593 EQGKIQLLISTDATARGIDVKRVNYVINYDAPQFIRTYVHRVGRTARAGEAGVAFSLVLR 652
Query: 397 DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 430
+ +RF ++L+ A H + + SL+P+
Sbjct: 653 IQERRFLRMLRDAGIRDIKKHPVKGN---SLKPL 683
>gi|343426780|emb|CBQ70308.1| related to DBP6-ATP-dependent RNA helicase [Sporisorium reilianum
SRZ2]
Length = 852
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 172/459 (37%), Positives = 252/459 (54%), Gaps = 58/459 (12%)
Query: 1 MGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
+G+S F VQV+V + P RDLC+++PTGSGKTL+Y++PIV+ L
Sbjct: 345 LGVSEWFAVQVSVIPCLLAQPQSRSLYRPFAPPRDLCVSAPTGSGKTLAYSVPIVEVLRT 404
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R + LRAL+VLPTRDL QV+ +A GL +G A GQ S A E ++L+ +
Sbjct: 405 RQIVRLRALIVLPTRDLVSQVRSTLELLAKGSGLRIGTATGQHSFAHEQNQLVG----TS 460
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
D ED +L+S VDILVATPGRL+DH+++T GFTL HL +LV+DE DRLL +++Q
Sbjct: 461 SSDEDEEDA--QLESKVDILVATPGRLIDHLDSTPGFTLAHLRFLVIDEADRLLNQSFQE 518
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV----ERGFKDKPYPRLVKMVL 227
WL VL T + S A L T G+ + +++ P + K++
Sbjct: 519 WLRRVLAATEGTANSDVHSQSRGSAQAPYELLTSSASGLGAATQSTLQEEAVPSVQKLLF 578
Query: 228 SATLTQDPNKLAQLDLHHPLFLTTGET------------------RYKLPERLESYKLIC 269
SATLT+DP K+A L L +P ++T +T R+ LP L + L+
Sbjct: 579 SATLTRDPAKIAALGLRNPHYITVQDTHSAGDDENGRVNGAQQHERFSLPHSLREHMLVT 638
Query: 270 ESKLKPLYLVALLQSLGEE---------KCIVFTSSVESTHRLCTLLNHFGELRIK---- 316
S KP +L+ LL ++ K + FT SV+S RL L+ F ++R +
Sbjct: 639 TSADKPFHLLYLLHRPDQDVDNNDSRIRKALCFTKSVDSAARLVKLIEIFEQVRSENGLV 698
Query: 317 --------IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
+K YS + S R + L AF +G+I +LV SD ++RG+D+ V +VV+YD P
Sbjct: 699 SRGSRPLVVKNYSSELKPSDRQRILAAFAQGEIDLLVCSDLISRGIDLPSVEHVVSYDAP 758
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
Y+HR GRTARAG+ G +TL+ + E + FKK+++
Sbjct: 759 IDPAKYVHRVGRTARAGKHGDAWTLVEEQEARHFKKMIR 797
>gi|74220751|dbj|BAE31347.1| unnamed protein product [Mus musculus]
Length = 639
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 170/461 (36%), Positives = 250/461 (54%), Gaps = 55/461 (11%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI+S FPVQ AV IG G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 189 GITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 248
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF L V L GQ S+A E L+++
Sbjct: 249 RVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK----- 303
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 304 --------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 355
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLS 228
WLP V+ A+ + GS ++R + P L K++ S
Sbjct: 356 WLPRVVA------------AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFS 403
Query: 229 ATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKL 273
ATLTQDP KL +L L+ P +T +Y P L + + C
Sbjct: 404 ATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSS 463
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333
KPL ++ L+ + + + FT+S E++HRL L FG + + E+S R K L
Sbjct: 464 KPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKIL 521
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
K F +GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTL
Sbjct: 522 KQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTL 581
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
L K + ++F +++ +A H IP L++ L Y++
Sbjct: 582 LLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETA 622
>gi|336383556|gb|EGO24705.1| hypothetical protein SERLADRAFT_369949 [Serpula lacrymans var.
lacrymans S7.9]
Length = 651
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 176/456 (38%), Positives = 246/456 (53%), Gaps = 56/456 (12%)
Query: 1 MGISSLFPVQVAVW-----QETIGPGLFE-----RDLCINSPTGSGKTLSYALPIVQTLS 50
+GI+ LF VQ + ++ GL+ RD+C+++PTGSGKTL+Y LPIV+TLS
Sbjct: 187 LGITELFAVQTRLLPFLLPRDARKRGLYAPYAPPRDVCVSAPTGSGKTLAYVLPIVETLS 246
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
+R + LRALVVLPTRDL +QV++ F + GL VG A GQ S A E S+LI
Sbjct: 247 SRIITRLRALVVLPTRDLVMQVRETFEEVGKGRGLKVGTATGQHSFAHEQSQLIA----- 301
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D L S +DIL+ TPGRL+DH+N T F+L+HL +LV+DE DRLL +++Q
Sbjct: 302 -----DRSSGLLGGSSKIDILICTPGRLVDHMNGTPNFSLQHLRFLVIDEADRLLAQSFQ 356
Query: 171 AWLPTVLQLT-----------RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD-KP 218
W+ V+ T R++ E F A P + I G+ D KP
Sbjct: 357 DWVARVVTATRPTTFPSSGTPRAEEEETFGCADGLAPPLLHAKYAIANT---YGYMDEKP 413
Query: 219 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET--------------RYKLPERLES 264
K++ SATL +DP KLA L L + + RY +P L
Sbjct: 414 SSSCQKLLFSATLPRDPGKLAGLQLRDVKYFVVQKARGGREEGVLDVVMERYTMPATLRE 473
Query: 265 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-------GELRIKI 317
+ ++C S KPL L L+Q +VFT S EST RL L F G L +
Sbjct: 474 HMIVCASSEKPLVLFDLVQRHKVRNGLVFTKSAESTARLVRLFELFEKAVAGEGRLGVVA 533
Query: 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 377
K YS R L+ F+ +IQ+LV SD ++RGMD+ V++VV+YD P ++ Y+HR
Sbjct: 534 KAYSSDLSVGERRGILEKFKAEEIQILVCSDLISRGMDMSHVSHVVSYDVPVDMRKYVHR 593
Query: 378 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 413
GRTARAG+ G +TL+ + E + FK++L +AD+ S
Sbjct: 594 VGRTARAGREGDAWTLVEEQEARYFKRMLSEADHIS 629
>gi|40538825|ref|NP_081432.2| ATP-dependent RNA helicase DDX51 [Mus musculus]
gi|81892367|sp|Q6P9R1.1|DDX51_MOUSE RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
gi|38614333|gb|AAH60646.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Mus musculus]
Length = 639
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 170/461 (36%), Positives = 250/461 (54%), Gaps = 55/461 (11%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI+S FPVQ AV IG G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 189 GITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 248
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF L V L GQ S+A E L+++
Sbjct: 249 RVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK----- 303
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 304 --------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 355
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLS 228
WLP V+ A+ + GS ++R + P L K++ S
Sbjct: 356 WLPRVVA------------AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFS 403
Query: 229 ATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKL 273
ATLTQDP KL +L L+ P +T +Y P L + + C
Sbjct: 404 ATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSS 463
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333
KPL ++ L+ + + + FT+S E++HRL L FG + + E+S R K L
Sbjct: 464 KPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKIL 521
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
K F +GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTL
Sbjct: 522 KQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTL 581
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
L K + ++F +++ +A H IP L++ L Y++
Sbjct: 582 LLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETA 622
>gi|58264962|ref|XP_569637.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134109595|ref|XP_776912.1| hypothetical protein CNBC4030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259592|gb|EAL22265.1| hypothetical protein CNBC4030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225869|gb|AAW42330.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 701
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 174/443 (39%), Positives = 248/443 (55%), Gaps = 48/443 (10%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLC------INSPTGSGKTLSYALPIVQTLSNRAV 54
+GI F VQ A+ + L C I++PTGSGKTL+Y +PI++ LS R +
Sbjct: 236 IGIEDFFAVQAAMLPRLLPLQLIPSPYCPLPDYLISAPTGSGKTLAYTIPILEILSQRTI 295
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LRAL+VLPTRDL QV++ A++ GL++G GQ S A E +L+
Sbjct: 296 CRLRALIVLPTRDLVFQVRETMEALSKGTGLTIGTVTGQHSFAQERKQLVA--------- 346
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
D + L S +DIL+ATPGRLMDH+ +T FTL+HL +LV+DE DRLL +++Q WL
Sbjct: 347 -DLDTPLLGGSSKLDILIATPGRLMDHLASTPNFTLQHLRFLVIDEADRLLNQSFQDWLT 405
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKT--IRRCGV--ERGFKDKPYPRLV-KMVLSA 229
VL TR E A +F + ++ + + CG+ +RG P + K++ SA
Sbjct: 406 QVLAYTRPPVE---PIAPSFKRKPYDTVSSAFMEACGLVDKRGEWCDSSPSICQKLLFSA 462
Query: 230 TLTQDPNKLAQLDLHHPLFL------------TTGETRYKLPERLESYKLICESKLKPLY 277
TLT+DP+K+A L LHHP + + GE ++ LP L LI LKPL
Sbjct: 463 TLTRDPSKVAALSLHHPQYYIVQSSSVPALPTSVGE-QFALPSSLSEKMLILPPALKPLN 521
Query: 278 LVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHF---------GELRIKIKEYSGLQRQ 326
L+ L+ ++ +VFT SVES RL LL F G R+ +++YSG R
Sbjct: 522 LIHLIHHSEFNVDRALVFTKSVESAARLVKLLEFFEDAYVLGGGGGKRLVVEQYSGETRA 581
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
+ + L F EGK+ ++V SD + RG+D+ V++VV+YD P I+ Y+HR GRTARAG+
Sbjct: 582 KDKKQLLAEFGEGKVNLIVCSDLIARGIDLPSVSHVVSYDIPLDIRKYVHRVGRTARAGR 641
Query: 387 LGRCFTLLHKDEVKRFKKLLQKA 409
G +TL+ K E FK +LQ A
Sbjct: 642 QGTAWTLVEKQEALHFKGMLQNA 664
>gi|348537210|ref|XP_003456088.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Oreochromis
niloticus]
Length = 621
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 172/434 (39%), Positives = 232/434 (53%), Gaps = 50/434 (11%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI FPVQ V IG G ++ RD+C+++PTGSGKTLS+ +PI+Q L +
Sbjct: 177 GIQHFFPVQAEVIPAILESAQQGLLIGRGGYKPRDICVSAPTGSGKTLSFVIPIIQVLMD 236
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RAL VLPT++LA QV VFA+ A L V + GQ S A E + L
Sbjct: 237 RVVCEVRALAVLPTKELAQQVHRVFASYAEGTSLKVVMLAGQKSFAAEQASL-------- 288
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
E +S DI+VATPGRL+DH+ G LEHL +LV+DE DR++ +Q+
Sbjct: 289 -----SEHRWNMRRSLADIVVATPGRLIDHMTKNSGLCLEHLRFLVIDEADRMIDSMHQS 343
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V+ +R S F +T C + P L K++ SATL
Sbjct: 344 WLSQVMGAV---YRSRAEPGSVFR-------RTEAAC-ITSASLSPPQTPLQKLLFSATL 392
Query: 232 TQDPNKLAQLDLHHPLFL--------------TTGETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P T G R+ P+ L Y + C KPL
Sbjct: 393 TQNPEKLQQLGLHQPRLFSSAHGQADSTAASPTHGHDRFNFPQGLTEYYVPCTMSSKPLL 452
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
L+ + + + FT+S E+ HRL LL FG ++ E+S R KTLK F
Sbjct: 453 LLHFILRMKLHPILCFTNSRETAHRLHLLLQLFGG--VQAAEFSSQLSPGDRKKTLKEFE 510
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA+ RG+D+ GV VVNYD P YI+TYIHR GRTARAG+ G FT L +
Sbjct: 511 QGKIQLLISTDAVARGIDISGVKCVVNYDAPQYIRTYIHRVGRTARAGKTGLAFTFLLRV 570
Query: 398 EVKRFKKLLQKADN 411
+ K F +++ KA +
Sbjct: 571 QEKNFLQMVVKAGS 584
>gi|405123262|gb|AFR98027.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. grubii
H99]
Length = 718
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 173/443 (39%), Positives = 245/443 (55%), Gaps = 48/443 (10%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAV 54
+G+ F VQ A+ + L D I++PTGSGKTL+Y +PI++ LS R V
Sbjct: 253 IGVEDFFAVQAAMLPRLLPLQLIPSPYSPLPDYLISAPTGSGKTLAYTIPIIEILSQRTV 312
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LRAL++LPTRDL QV++ A++ GL++G GQ S A E +L+
Sbjct: 313 CRLRALIILPTRDLVFQVRETMEALSKGTGLTIGTVTGQHSFAQERKQLVA--------- 363
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
D + L S +DIL+ATPGRLMDH+ +T FTL+HL +LV+DE DRLL +++Q WL
Sbjct: 364 -DLDTPLLGGSSKLDILIATPGRLMDHLASTPNFTLQHLRFLVIDEADRLLNQSFQDWLT 422
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKT--IRRCGV---ERGFKDKPYPRLVKMVLSA 229
VL TR E A +F + ++ + + CG+ + D K++ SA
Sbjct: 423 QVLAYTRPPVE---PIAPSFKRKPYDTVSSAFMEACGLVNKSEEWCDSSPSICQKLLFSA 479
Query: 230 TLTQDPNKLAQLDLHHPLFL------------TTGETRYKLPERLESYKLICESKLKPLY 277
TLT+DP+K+A L LHHP + + GE ++ LP L LI LKPL
Sbjct: 480 TLTRDPSKVAALSLHHPQYYIVQSSSAPALPTSVGE-QFALPSSLSEKMLILPPALKPLN 538
Query: 278 LVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHF---------GELRIKIKEYSGLQRQ 326
L+ L+ ++ +VFT SVES RL LL F G R+ I++YSG R
Sbjct: 539 LIHLIHHPEFNVDRALVFTKSVESAARLVKLLEFFEDAYVLGGGGGKRLVIEQYSGEMRA 598
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
+ + L F EGKI ++V SD + RG+D+ V++VV+YD P I+ Y+HR GRTARAG+
Sbjct: 599 RDKKQLLAEFGEGKINLIVCSDLIARGIDLPSVSHVVSYDIPLDIRKYVHRVGRTARAGR 658
Query: 387 LGRCFTLLHKDEVKRFKKLLQKA 409
G +TL+ K E FK +LQ A
Sbjct: 659 QGTAWTLVEKQEALHFKGMLQNA 681
>gi|213511024|ref|NP_001133236.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
gi|209147204|gb|ACI32879.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
Length = 678
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 174/454 (38%), Positives = 249/454 (54%), Gaps = 50/454 (11%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GI LFPVQ V E++ GL RD+C+++PTGSGKTL++ +P++Q L
Sbjct: 233 GIHHLFPVQAEVIPAILESVSHGLLIGRGGYKPRDVCVSAPTGSGKTLAFVIPVIQALIG 292
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +R L VLPT++LA QV VF++ A L V + GQ S A E + L +
Sbjct: 293 RVVCKVRVLAVLPTKELAQQVCKVFSSYAEGNSLKVVMLAGQKSFAAEQALLSEN---RG 349
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
GI + S DI+VATPGRL+DHIN GF+LEHL +L++DE DR++ +Q+
Sbjct: 350 GISH----------SLADIVVATPGRLVDHINKNDGFSLEHLRFLIIDEADRMIDSMHQS 399
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V + R S+A + K + P L K++ SATL
Sbjct: 400 WLSQVTKAVY--RPRRVSEAVSIF-------KRTEPAPITAASLSPPQMPLQKLLFSATL 450
Query: 232 TQDPNKLAQLDLHHPLFLTT----------GETRYKLPERLESYKLICESKLKPLYLVAL 281
TQ+P KL QL LH P ++ + R+ P+ L Y + C KPL ++
Sbjct: 451 TQNPEKLQQLGLHQPRLFSSVHSQSTTNPESQERFNFPQGLTEYYVPCTLSKKPLLILHF 510
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+ L + FT+S E+THRL L+ FG ++ E+S + R +TLK F +GKI
Sbjct: 511 ILRLKFSPILCFTNSREATHRLFLLVQLFGG--VQAAEFSSRLSPNERMRTLKEFEQGKI 568
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
Q+L+S+DA RG+D+ GV VVNYD P +I+TYIHR GRTARAG+ G FT L + K+
Sbjct: 569 QLLISTDAAARGIDINGVKCVVNYDAPQFIRTYIHRVGRTARAGKSGLAFTFLLGVQEKK 628
Query: 402 FKKLLQKADNDSCPIHS---IPSSLIESLRPVYK 432
F ++++ D S IH +P +L +S+ P Y+
Sbjct: 629 FLQMVK--DAGSPGIHKQIVMPGNL-KSMEPRYE 659
>gi|392594884|gb|EIW84208.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 620
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 173/449 (38%), Positives = 245/449 (54%), Gaps = 52/449 (11%)
Query: 1 MGISSLFPVQVAVWQ----ETIG------PGLFERDLCINSPTGSGKTLSYALPIVQTLS 50
+GI+ LF VQ A+ ET P RD+C+++PTGSGKTL+Y LPIV+ LS
Sbjct: 152 LGITELFAVQTALLPFLLPETHSQRALYVPYEPLRDVCVSAPTGSGKTLAYVLPIVEILS 211
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R V LRAL+VLPTRDL QV++ F ++ GL G A GQ S + E S+L+
Sbjct: 212 TRIVTRLRALIVLPTRDLVTQVRETFEVVSKGRGLKTGTATGQHSFSHEQSQLVA----- 266
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D L+ S VDIL+ TPGRL+DHIN T F+L+HL +LV+DE DRLL +++Q
Sbjct: 267 -----DSSTSLRGGSSKVDILICTPGRLIDHINGTPNFSLQHLRFLVIDEADRLLAQSFQ 321
Query: 171 AWLPTVLQLTRSDNENRFSDASTF------LPSAFGSLKTIRRCGVERGFKDKPYPRLVK 224
WL VL T + A TF LP+ G T + ++ K
Sbjct: 322 DWLAQVLAATLPPDHA--GAAYTFPTDRYGLPTPDGLAPTFVHH-FQTDIDEEKESSCQK 378
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLT------------TGETRYKLPERLESYKLICESK 272
++ SATLT+DP KLA L L P + GE ++ +P L+ + +ICE
Sbjct: 379 LLFSATLTRDPGKLAALKLRDPKYFVVQAKEKLDGNDYVGE-QFTMPATLKEHMIICEPS 437
Query: 273 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL----------RIKIKEYSG 322
KPL L LLQ+ + ++FT S EST RL L HF ++ I+ YS
Sbjct: 438 QKPLMLFYLLQNRSVDNALIFTKSSESTSRLVRLFEHFATFKQSGAASEDDKLVIQAYSS 497
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
R + L+ F+ ++ +LV SD ++RG+D+ V +VV+YD P ++ Y+HR GRTA
Sbjct: 498 DLPAGERKRILEKFKAKEVHLLVCSDLVSRGIDISHVAHVVSYDAPVDMRKYVHRVGRTA 557
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
RAG+ G +TL+ + E + FK +L+ AD+
Sbjct: 558 RAGREGHAWTLVEEQEARYFKTMLKTADH 586
>gi|219122463|ref|XP_002181564.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406840|gb|EEC46778.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 453
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 173/439 (39%), Positives = 248/439 (56%), Gaps = 47/439 (10%)
Query: 2 GISSLFPVQVAVWQETIGPG----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
G ++ FP+Q + I + RD+CI +PTGSGKTL+Y LP++ +L+NR +R L
Sbjct: 27 GFANFFPIQALAIPDVIASERHAYIQARDVCITAPTGSGKTLAYVLPVLNSLANRKIRRL 86
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD- 116
RALVVLP+RDLA QV VF + L VGLA+GQS E ++ E G +D
Sbjct: 87 RALVVLPSRDLANQVFKVFKSFMEGSDLKVGLAIGQSDFVAEQMAILALQAFEDGNDHDL 146
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
PE ++ QS +D+LV TPGRL+DH++ T GF+LEHL +L+VDE DRLL + Y W+ V
Sbjct: 147 PEK--RDPQSTIDVLVCTPGRLVDHLDNTPGFSLEHLRFLIVDEADRLLSQTYHNWIGRV 204
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
+Q S D + F + S +++ +P +L K ++SATLT+DP
Sbjct: 205 IQSANSGRGGVVGDDTDF--NTNDSYRSVASSVC------RPV-QLRKFLVSATLTRDPQ 255
Query: 237 KLAQL--------DLH-----HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL- 282
KLA L D+H H F T +Y +PE L + + C ++ KP+ L+AL+
Sbjct: 256 KLASLKLVNPKHFDVHQLRTGHQGFFNTNTKKYSMPEGLHEHTVECTAEQKPIVLLALVL 315
Query: 283 --------QSLGEEKCIVFTSSVESTHRLCTLLN------HFGELRIKIKEYSGLQRQSV 328
QS ++ IVFT+S++STHRL LL +GE + E+S Q
Sbjct: 316 DQLTPQQSQSSSKQSVIVFTASLDSTHRLARLLQLLWVSAGYGEPD-SVVEFSSALNQHE 374
Query: 329 RSKTLKAFR--EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
RS +K + K+ V+V SD M+RGMD++ V V+NYD P KTY+HR GRTARAG+
Sbjct: 375 RSALMKRCNDPQDKVSVVVCSDGMSRGMDIDAVRAVINYDVPGLAKTYVHRCGRTARAGK 434
Query: 387 LGRCFTLLHKDEVKRFKKL 405
G +LL + ++F K+
Sbjct: 435 EGHAISLLKGGQTRQFDKM 453
>gi|384494370|gb|EIE84861.1| hypothetical protein RO3G_09571 [Rhizopus delemar RA 99-880]
Length = 483
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 172/417 (41%), Positives = 241/417 (57%), Gaps = 46/417 (11%)
Query: 1 MGISSLFPVQVAVW-----QETIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRAV 54
+G+SSLF VQ+AV +T+ + DLCI++PTGSGKT++YALPIV LS R V
Sbjct: 55 IGLSSLFAVQMAVIPVFLRHKTLYDTIKVSGDLCISAPTGSGKTMAYALPIVDILSKRVV 114
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
+ LRA+VVLPTRDL +QVK+ F A L V GQ S E L+
Sbjct: 115 KRLRAVVVLPTRDLVVQVKETFDAFVKGTDLVVAAVSGQQSFTHEQHVLVG--------- 165
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+ E+ +S VDIL+ATPGRL+DH+N+T FTL+H+ +LV+DE DRLL +++ WL
Sbjct: 166 -NEEESYPGGKSRVDILIATPGRLIDHLNSTPNFTLQHVRFLVIDEADRLLNQSFNDWLN 224
Query: 175 TVLQLTRSDNENRFSDASTF----------LPSAFGSLKTIRRCGVERGFKDKPYPR--- 221
+L T N +DA LP A T + + D P+
Sbjct: 225 RILLAT---NPVVNADAPLLGFKTDKNGITLPDAIAP--TFLQSHYKLPVTDLDIPKAPF 279
Query: 222 LVKMVLSATLTQDPNKLAQLDLHHPLFLTT-------GETRYKLPERLESYKLICESKLK 274
+ K++ SATLT++P K+A L L+ P +++ + Y PE L+ Y +I ++ K
Sbjct: 280 IQKLLFSATLTKNPAKIAGLHLNEPEYISVQHEDEDHAQREYTTPEGLKEYMIIVSTEKK 339
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVR 329
PL ++ LL LG + + FT SVEST RL TL+N + L RIK+KEYS R + R
Sbjct: 340 PLTVIYLLHQLGVKSGLCFTKSVESTERLQTLINAYEALQPEEKRIKVKEYSSELRPTER 399
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
LK F++G+I +L+ SD + RG+D++ V VV+YD PAY+ YIHR GRTARAG+
Sbjct: 400 KAVLKQFKDGEIDLLICSDLIGRGIDLDSVEYVVSYDAPAYMDKYIHRVGRTARAGR 456
>gi|402224982|gb|EJU05044.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 540
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 176/462 (38%), Positives = 254/462 (54%), Gaps = 75/462 (16%)
Query: 1 MGISSLFPVQVAVWQETI-GP----GLFE-----RDLCINSPTGSGKTLSYALPIVQTLS 50
+G+ +LF VQ A+W + GP GL+E RD+C+++PTGSGKTL+YA+PIV+ LS
Sbjct: 68 LGVDNLFAVQAALWPWLLTGPEARRGLYEPRRAPRDVCVSAPTGSGKTLAYAVPIVEILS 127
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R V LR+LV+LPTRDL QVK+ F A+ GL VG A G S A E L++
Sbjct: 128 VRVVTRLRSLVILPTRDLVQQVKETFEALCKGTGLKVGSATGAQSWAKEQKALVE----- 182
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D E LQ S +DILV TPGRL+DH++ T F+L+HL +LV+DE DRLL +++Q
Sbjct: 183 -----DLETKLQGGSSNIDILVCTPGRLIDHLDDTPNFSLQHLRFLVIDEADRLLSQSFQ 237
Query: 171 AWLPTVL-QLTRSDN----------ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 219
++LP +L LT + + + S A LP FG + C
Sbjct: 238 SFLPRLLTALTPTPHPVPPSSDLLIPDALSPAWLDLPHEFGWAPMLPSCQ---------- 287
Query: 220 PRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT----GE-------TRYKLPERLESYKL 267
K++ SAT+T+DP L L L +P F+ T GE + +P+ L Y L
Sbjct: 288 ----KLLFSATMTRDPGVLKSLGLRNPKYFIVTAAPEGERDEAIIREEFSVPDTLSEYLL 343
Query: 268 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF----------------- 310
+ + LKPLYL LL + +VFT S EST RL L F
Sbjct: 344 VVPTDLKPLYLFHLLHTHPITNALVFTKSTESTTRLLKLFEFFESARLSVSTSVSASAQD 403
Query: 311 -GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 369
G +I + +S + R L F++G+I+VLV+SD ++RG+D+ V++VVNYD P
Sbjct: 404 GGSPQILARAFSSELGKGERKSILDQFKQGRIRVLVASDLVSRGIDIPDVSHVVNYDSPL 463
Query: 370 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
++ Y+HRAGRTARAG+ G ++L+ E + +++L+ A +
Sbjct: 464 DMRKYVHRAGRTARAGREGEVWSLVESQEARWVREMLKAAGH 505
>gi|395840150|ref|XP_003792928.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Otolemur garnettii]
Length = 665
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 171/454 (37%), Positives = 246/454 (54%), Gaps = 47/454 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GIS FPVQ AV +G G ++ DLC+++PTGSGKTL++ +P+VQ L
Sbjct: 217 GISFYFPVQAAVIPTLLESAANGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLQ 276
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF L V L GQ ++A E L+++
Sbjct: 277 RVVCHVRALVVLPTKELAQQVSKVFNIYTDTTPLRVALITGQKTLAKEQESLVQK----- 331
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+
Sbjct: 332 --------TTDGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQS 383
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P + ++ V P L K++ SATL
Sbjct: 384 WLPRVVAAA-------FQGEGPPDPCVLLQRRQLQ--AVTAASTCCPQMPLQKLLFSATL 434
Query: 232 TQDPNKLAQLDLHHPLFLTT-----------GET--RYKLPERLESYKLICESKLKPLYL 278
TQ+P KL QL LHHP +T G+ +Y P L + + C KPL +
Sbjct: 435 TQNPEKLQQLGLHHPRLFSTSLACKGPQDADGDVGGKYAFPVGLTHHYVPCSLSTKPLLV 494
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ L+ + + FT+S E++HRL L+ FG + + E+S R LK F +
Sbjct: 495 LHLILEKSFSRVLCFTNSRENSHRLFLLVQAFGG--VSVAEFSSRYGPGQRKMILKQFEQ 552
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG G+ FTLL K +
Sbjct: 553 GKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGNAGQAFTLLLKVQ 612
Query: 399 VKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+RF ++L + + H + S L++ L P Y+
Sbjct: 613 ERRFLRMLTEGGVPALQRHELLSELLQPLVPRYE 646
>gi|443895519|dbj|GAC72865.1| protein kinase [Pseudozyma antarctica T-34]
Length = 860
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 173/460 (37%), Positives = 255/460 (55%), Gaps = 63/460 (13%)
Query: 1 MGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
+G+S F VQV+V + P RDLC+++PTGSGKTL+Y +PIV+ L
Sbjct: 356 LGVSEWFAVQVSVIPCLLAQPQSRSLYRPFAPPRDLCVSAPTGSGKTLAYTVPIVEVLRT 415
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R + LRAL+VLPTRDL QV+ +A GL + A G S A E ++L++
Sbjct: 416 RQIVRLRALIVLPTRDLVSQVRSTLELVAKGSGLRIATATGHHSFAHEQTQLVE------ 469
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G+ D +D + QS VDIL+ATPGRL+DH+++T GFTL HL +LV+DE DRLL +++Q
Sbjct: 470 GLDADDDDDSVQKQSKVDILIATPGRLIDHLDSTPGFTLAHLRFLVIDEADRLLNQSFQE 529
Query: 172 WLPTVLQLTR--SDNENRFSDAS------TFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 223
WL VL T ++ ++R ++A+ L SA R ++ ++ P +
Sbjct: 530 WLRRVLSATEGVANADSRCTEATPAQAPYELLSSASSGFGAAARSTLQ----EEAVPSVQ 585
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFLTT--------GET---------RYKLPERLESYK 266
K++ SATLT+DP K+A L L +P ++T GE+ R+ LP L +
Sbjct: 586 KLLFSATLTRDPAKIAALGLRNPHYITVQDDNPAADGESGLAERAQHERFSLPHSLHEHM 645
Query: 267 LICESKLKPLYLVALLQSLGEE-------KCIVFTSSVESTHRLCTLLNHFGELR----- 314
L+ S KP +L+ LL +E K + FT SVES RL L+ F E+R
Sbjct: 646 LVTTSADKPFHLLYLLHRPDDEQAAAKIRKALCFTKSVESAARLVKLVEMFEEVRQESGL 705
Query: 315 -------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ +K YS R S R + L F G+I +LV SD ++RG+D+ V +V++YD
Sbjct: 706 IARGARPMVVKNYSSELRPSDRQRILAQFGNGEIDLLVCSDLISRGIDLPSVEHVISYDA 765
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
P Y+HR GRTARAG+ G +TL+ + E + FKK+++
Sbjct: 766 PVDSAKYVHRVGRTARAGKHGDAWTLVEEQEARHFKKMVR 805
>gi|71004804|ref|XP_757068.1| hypothetical protein UM00921.1 [Ustilago maydis 521]
gi|46096872|gb|EAK82105.1| hypothetical protein UM00921.1 [Ustilago maydis 521]
Length = 870
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 170/461 (36%), Positives = 252/461 (54%), Gaps = 59/461 (12%)
Query: 1 MGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
+GIS F VQV+V + P RDLC+++PTGSGKTL+Y++PIV+ L
Sbjct: 361 LGISEWFAVQVSVIPCLLAQPQSRSLYRPFAPPRDLCVSAPTGSGKTLAYSVPIVEVLRT 420
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R + LRAL+VLPTRDL QV+ +A GL +G A GQ S A E ++L+ +
Sbjct: 421 RQIVRLRALIVLPTRDLVSQVRSTLELVAKGSGLRIGTATGQHSFAHEQNQLVGS---SS 477
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ D ++ E + +DIL+ATPGRL+DH+++T GF L HL +LVVDE DRLL +++Q
Sbjct: 478 AVDQDQDEAQSEPK--IDILIATPGRLIDHLDSTPGFNLAHLRFLVVDEADRLLNQSFQE 535
Query: 172 WLPTVLQLT--RSDNENRFSDASTFLPSA-----FGSLKTIRRCGVERGFKDKPYPRLVK 224
WL VL T ++D R + P+ F S + +++ P + K
Sbjct: 536 WLRRVLAATNGKTDQAERERASQKSGPAQAPFELFSSSASGLGAAATSTLQEEAAPSVQK 595
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGET------------------RYKLPERLESYK 266
++ SATLT+DP K+A L L +P ++T +T ++ LP L +
Sbjct: 596 LLFSATLTRDPAKIAALGLRNPHYITVQDTNSAGDEDQGRANGVQQHEQFSLPHSLHEHM 655
Query: 267 LICESKLKPLYLVALLQ-------SLGE-EKCIVFTSSVESTHRLCTLLNHFGELRIK-- 316
L+ S KP +L+ LL LG K + FT SV+S RL LL F E+R++
Sbjct: 656 LVTTSADKPFHLLYLLHRPDDVNNELGRIRKALCFTKSVDSAARLVKLLEIFEEVRVENS 715
Query: 317 ----------IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
+K YS + S R + L AF +G+I +LV SD ++RG+D+ V +V++YD
Sbjct: 716 LIARGSRALVVKNYSSELKPSDRQRILSAFEKGEIDLLVCSDLISRGIDLPSVEHVISYD 775
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
P Y+HR GRTARAG+ G +TL+ + E + FKK ++
Sbjct: 776 APIDPAKYVHRVGRTARAGKHGDAWTLVEEQEARHFKKTVR 816
>gi|321253768|ref|XP_003192843.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317459312|gb|ADV21056.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 702
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 174/448 (38%), Positives = 244/448 (54%), Gaps = 58/448 (12%)
Query: 1 MGISSLFPVQVAVW------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 54
+G+ F VQ A+ Q P D I++PTGSGKTL+YA+PI++ LS R V
Sbjct: 237 IGVEDFFAVQAAMLPRLLPLQLIPSPYSSLPDYLISAPTGSGKTLAYAIPIIEILSQRTV 296
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LRAL+VLPTRDL QV++ A++ GL++G GQ S A E +L+
Sbjct: 297 CRLRALIVLPTRDLVFQVRETMEALSKGTGLTIGTVTGQHSFAQERKQLVA--------- 347
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
D E L S +DIL+ATPGRLMDH+ +T FTL+HL +LV+DE DRLL +++Q WL
Sbjct: 348 -DLETPLLGGSSKLDILIATPGRLMDHLASTPNFTLQHLRFLVIDEADRLLNQSFQNWLT 406
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFG-------SLKTIRRCGV---ERGFKDKPYPRLVK 224
VL TR E +P +F S + C + + + D K
Sbjct: 407 QVLAYTRPPIEP--------IPPSFKRKPHDTVSSAFMEACSLIDKDGEWCDSSPSICQK 458
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFL------------TTGETRYKLPERLESYKLICESK 272
++ SATLT+DP+K+A L LHHP + + GE ++ LP L LI
Sbjct: 459 LLFSATLTRDPSKIAALSLHHPQYYIVQSSIAPALPTSVGE-QFALPSSLSEKMLIVPPA 517
Query: 273 LKPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHF---------GELRIKIKEYS 321
LKPL L+ L+ ++ +VFT SVES RL LL F G R+ +++YS
Sbjct: 518 LKPLNLIHLVHHSEFNVDRALVFTKSVESAARLVKLLEFFEDAYVLGGGGGKRLAVEQYS 577
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
G + + + L F EGK+ ++V SD + RG+D+ V++VV+YD P I+ Y+HR GRT
Sbjct: 578 GEMKARDKKQLLAEFGEGKVNLIVCSDLIARGIDLPSVSHVVSYDIPLDIRKYVHRVGRT 637
Query: 382 ARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
ARAG+ G +TL+ K E FK +LQ A
Sbjct: 638 ARAGRQGTAWTLVEKQEALHFKGMLQNA 665
>gi|388582635|gb|EIM22939.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 675
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 172/454 (37%), Positives = 240/454 (52%), Gaps = 63/454 (13%)
Query: 1 MGISSLFPVQVAVWQETIG-----------PGLFERDLCINSPTGSGKTLSYALPIVQTL 49
+G SLF VQ+A IG P RD+C+++PTGSGKTL Y LPIV+ +
Sbjct: 209 VGFESLFAVQLAAIPLLIGDLKENIRHPLYPSESPRDICVSAPTGSGKTLGYTLPIVEII 268
Query: 50 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP-K 108
S R V LRALVVLPTRDL QVK+ F A L VG GQ S E ++L+ +
Sbjct: 269 SRRLVTRLRALVVLPTRDLVSQVKETFEIFAKGTDLKVGTITGQQSFQQEQAKLVDQTDS 328
Query: 109 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL------------ 156
+ AG C S VDIL+ATPGRL+DHIN+T FTL+HL +L
Sbjct: 329 VLAGGC-----------SKVDILIATPGRLIDHINSTPNFTLQHLRFLVGILTYIFMELI 377
Query: 157 ---VVDETDRLLREAYQAWL---------PTVLQLTRSDNENRFSDASTFLPSAFGSLKT 204
V+DE DRLL +++Q+W+ P Q R ++ S + ++T
Sbjct: 378 YAKVIDEADRLLNQSFQSWIDRIQVALTTPIQTQPKRDTHDALGYPNSMLIDEKHDLIET 437
Query: 205 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPER 261
R +RG + KM+ SATLT DP+K+ L L+ P F+ + Y +P
Sbjct: 438 FERP--QRGVQ--------KMLFSATLTTDPSKIRSLHLNEPKFVIVRNNKVEDYAIPTT 487
Query: 262 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---RIKIK 318
LE ++ E+ KPL L+ LL G + + FT SVES RL LL F E +
Sbjct: 488 LEERMIVSETAYKPLMLLHLLHQRGVRRALCFTKSVESATRLMHLLRLFKEEVGNGPTVA 547
Query: 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 378
+S R K L FR+G++ +L+S+D + RG+D++G+ NV+NYD P + Y+HR
Sbjct: 548 SFSSDLSPQERQKMLTKFRDGEVDMLISTDVIARGIDIQGIENVINYDIPLDMPKYVHRV 607
Query: 379 GRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
GRTARAG +G+ +TL+ E K FK + A ++
Sbjct: 608 GRTARAGLVGKAWTLVEVQEAKYFKTYTKNAKHE 641
>gi|388851453|emb|CCF54855.1| related to DBP6-ATP-dependent RNA helicase [Ustilago hordei]
Length = 869
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 249/459 (54%), Gaps = 56/459 (12%)
Query: 1 MGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
+G+S F VQ++V + P RDLC+++PTGSGKTL+Y +PIV+ L
Sbjct: 358 LGVSEWFAVQISVIPCLLAQPQSRSLYRPFAPPRDLCVSAPTGSGKTLAYTVPIVEVLRT 417
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R + LRAL+VLPTRDL QV+ +A GL +G A GQ S A E S+L+ L
Sbjct: 418 RQIVRLRALIVLPTRDLVSQVRSTLELVAKGSGLRIGTATGQHSFAHEQSQLVW--SLSV 475
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G Y+ ++ L+E S VD+L+ATPGRL+DH+++T GFTL HL +LV+DE DRLL +++Q
Sbjct: 476 GDDYEEQNALKE--SKVDVLIATPGRLIDHLDSTPGFTLAHLRFLVIDEADRLLNQSFQE 533
Query: 172 WLPTVLQLTRSDNENRF----SDASTFLPSAFGSLKTIRRCGVERG-FKDKPYPRLVKMV 226
WL VL T + +A+ P S G +++ P + K++
Sbjct: 534 WLRRVLAATEGKGTDAVPQWKGEAAAQAPHELLSGNASGLGGAAWSTLQEEAVPSVQKLL 593
Query: 227 LSATLTQDPNKLAQLDLHHPLFLTTGET------------------RYKLPERLESYKLI 268
SATLT DP K+A L L +P ++T ++ R+ LP L + L+
Sbjct: 594 FSATLTSDPAKIAALGLRNPHYITVQDSHSAGDEEDGRSNGSQQHERFSLPHSLHEHMLV 653
Query: 269 CESKLKPLYLVALLQSLGE--------EKCIVFTSSVESTHRLCTLLNHFGELRIK---- 316
S KP +L+ LL + K + FT SV+S RL L+ F ++R +
Sbjct: 654 TTSADKPFHLLYLLHRPDDVEQNSSRIRKALCFTKSVDSAARLVKLIEIFEQVRSESGLI 713
Query: 317 --------IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
+K YS + S R + L F +G+I +LV SD ++RG+D+ V +VV+YD P
Sbjct: 714 QRGSRPFVVKNYSSELKPSERQRILTQFGQGEIDLLVCSDLISRGIDLPTVEHVVSYDAP 773
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
Y+HR GRTARAG+ G +TL+ + E + FKK+++
Sbjct: 774 IDPAKYVHRVGRTARAGKHGDAWTLVEEQEARHFKKMVR 812
>gi|393221493|gb|EJD06978.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 496
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 174/457 (38%), Positives = 240/457 (52%), Gaps = 58/457 (12%)
Query: 1 MGISSLFPVQVAVW-----QETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLS 50
+GI+ F VQ A+ + L+ +D+C ++PTGSGKTL+Y +PIV+ LS
Sbjct: 8 LGINEFFAVQTALLPFLLPSKRCSRALYLPYDPPQDVCASAPTGSGKTLAYVIPIVEILS 67
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R LRALVVLPTRDL LQV++VF A+ GL +G+A GQ S A E +L+ P +
Sbjct: 68 ARIATKLRALVVLPTRDLVLQVQEVFEAVGKGRGLKIGVATGQHSFAHEQGQLV--PDQD 125
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
G Q S VDIL+ TPGRLMDH+N T GFTL+HL +LV+DE DRLL +++Q
Sbjct: 126 KGS--------QGGASKVDILICTPGRLMDHLNGTPGFTLQHLRFLVIDEADRLLAQSFQ 177
Query: 171 AWLPTVLQLTR------SDNENRFS----DASTFLPSAFGSLKTIRRCGVERGFKDKPYP 220
WL VL R SD + S AS+ L S+ + D +
Sbjct: 178 DWLAQVLSALRPPTQSISDGVSSLSLNKPGASSILGFGHDSIAPAFLPHIPTDLDDPKHS 237
Query: 221 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTT----------------GETRYKLPERLES 264
K++ SATLT+DP ++A L L P + G + +P L+
Sbjct: 238 SCQKLLFSATLTRDPARIAALGLRDPKYFVVQATTSIDRDTSGPAALGMENFAMPPSLKE 297
Query: 265 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF------------GE 312
+ + + KPL L LL + G +VFT S EST RL LL +F
Sbjct: 298 HYITTPTARKPLILFHLLHNRGISNALVFTKSAESTARLVKLLEYFEVAYLALSDTVNPP 357
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
RI + YS R L+ F++ +I +LV SD + RG+D+ V +VV+YD P I+
Sbjct: 358 KRIVAQAYSSDLPSGERKNVLEKFKKQEIDILVCSDLVARGLDISHVAHVVSYDAPVDIR 417
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
Y+HRAGRTARAG+ G +TL+ E K FK +L+ A
Sbjct: 418 KYVHRAGRTARAGRAGDAWTLVEDQEAKFFKDMLRDA 454
>gi|410914978|ref|XP_003970964.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Takifugu
rubripes]
Length = 596
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 165/454 (36%), Positives = 238/454 (52%), Gaps = 47/454 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI FPVQ V IGPG ++ RD+C+++PTGSGKTL++ +P++Q L
Sbjct: 151 GIDHFFPVQAEVIPAVLESAQQGLLIGPGGYKPRDICVSAPTGSGKTLAFVIPVIQVLMQ 210
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R + +RAL VLPT++LA QV VF+ A L V + GQ S A E + L
Sbjct: 211 RVICEVRALAVLPTKELAQQVFKVFSTYAEGTPLRVLMLAGQKSFAAEQASL-------- 262
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
E +S DI+VATPGRL+DHI+ G LE L +L++DE DR++ +QA
Sbjct: 263 -----SEYRGSRRRSLADIIVATPGRLVDHIHKKSGLNLEQLRFLIIDEADRMIDSMHQA 317
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V++ T S P A+ + P L K++ SATL
Sbjct: 318 WLSQVVKATYSSGSE---------PEAWSIFSRSEPACITAASLSPPRMPLQKLLFSATL 368
Query: 232 TQDPNKLAQLDLHHPLFLTTGETR-------------YKLPERLESYKLICESKLKPLYL 278
TQ+P KL QLDLH P ++ + + P+ L + + C KPL +
Sbjct: 369 TQNPEKLQQLDLHQPRLFSSNHCQADGTVAAAQKADCFDFPQGLTEFYVPCTLSRKPLLI 428
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ + L + FT+S E+ HRL L+ FG ++ E+S + R +TLK F++
Sbjct: 429 LHFVLRLKLSPILCFTNSREAAHRLYLLVQLFGG--VQAAEFSSRLSPAERKQTLKDFQQ 486
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GKIQ+L+S+DA RG+DV GV VVNYD P Y++TYIHR GRTARAG+ G FT L +
Sbjct: 487 GKIQLLISTDATARGIDVSGVKCVVNYDAPQYVRTYIHRVGRTARAGKSGLAFTFLLGVQ 546
Query: 399 VKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K+F K++ A + + S ++ + Y+
Sbjct: 547 EKKFLKMVMDAGSPGIQKQIVKSESLKGMEGRYE 580
>gi|223999483|ref|XP_002289414.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220974622|gb|EED92951.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 494
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 183/454 (40%), Positives = 247/454 (54%), Gaps = 54/454 (11%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSN--------RAVRCLRALVVLPTRDLALQVKDVF 76
RD+C ++PTGSGKTL++ LP++ L N R R LRALVVLP RDLA QV DVF
Sbjct: 19 RDVCCHAPTGSGKTLAFVLPLLTALYNESPGQSCTRGFRRLRALVVLPGRDLAKQVHDVF 78
Query: 77 AAIAPAVGLSVGLAVG----QSSIADEISELIK---RPKLEAGICYDPEDVLQELQSAVD 129
A L +GLAVG +S + E L+ + + GI PE QSAVD
Sbjct: 79 VRYAKGSHLKIGLAVGGGKKKSDLVYERRSLVAYDGTTRRDNGIQVFPE---FGGQSAVD 135
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
ILVATPGRLMDH+++T GFTL+HL +LV+DE DRL+ + YQ W+ VL+ S++ NRF
Sbjct: 136 ILVATPGRLMDHLDSTPGFTLQHLRFLVIDEADRLVNQPYQNWVGRVLEA--SNSSNRFG 193
Query: 190 DASTFLPSAFGSLKTIRRCGVE--RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
+ +P K G E G +P P L KM+ SATLTQDP KLA L L +P
Sbjct: 194 SS---VPVVRHGEKDQANTGGELVSGMFGRPVP-LRKMLFSATLTQDPQKLAVLGLKNPK 249
Query: 248 FLTTGETR------YKLPERLESYKLICESKLKPLYLVALL--------QSLGE-----E 288
+ Y +PE L + C ++ KP+ L+ALL S G+
Sbjct: 250 HFDANQVENIKAGSYSVPEGLTERMVECTAEQKPMVLLALLLDTEQLHSDSAGDGVKGVN 309
Query: 289 KCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFR----EG 339
IVFTSSV+STHRL LL E I E+S R+ L+ R
Sbjct: 310 LSIVFTSSVDSTHRLARLLQLLWEAGGYGPSSTIAEFSSSISAKQRAGILRRCRSSNVSN 369
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++ VLV SD M+RGMD+ V+ V+NYD P+Y KTY+HR GRTARAG+ G+ ++L ++
Sbjct: 370 RVSVLVCSDGMSRGMDLPCVSAVINYDVPSYAKTYVHRCGRTARAGKEGKAISVLKGGQI 429
Query: 400 KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 433
+F+++ + S I LI+ Y++
Sbjct: 430 AKFQRMRRLIGGGSVEKMGIKKELIKGTLSTYQA 463
>gi|390348197|ref|XP_797208.3| PREDICTED: uncharacterized protein LOC592601 [Strongylocentrotus
purpuratus]
Length = 997
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 173/443 (39%), Positives = 238/443 (53%), Gaps = 65/443 (14%)
Query: 1 MGISSLFPVQ---VAVWQETIGPGLFE-------RDLCINSPTGSGKTLSYALPIVQTLS 50
MG+ FPVQ + V E++ G+ RDLCI++PTGSGKTL+YA+PI+Q L
Sbjct: 349 MGVEKFFPVQQHVIPVLLESLRDGIHTGHAGYRPRDLCISAPTGSGKTLAYAIPIIQALM 408
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
NR V +RALVVLPTRDLA QV + +A+ A L L G A E S L++
Sbjct: 409 NRVVCRVRALVVLPTRDLATQVYKIISALCKATPLKPVLIGGTKKFAQEQSLLVR----- 463
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
++ EL S DI+VATPGRL+D+I+ T GF L+HL +LV+DE DRL+ Q
Sbjct: 464 --------EIDGELHSLADIVVATPGRLVDNISQTAGFNLQHLRFLVIDEADRLMEHISQ 515
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W+ V + + D T LP+ + + + R + P L K++ SAT
Sbjct: 516 DWIAQVEKSAYTP----LYDNGTTLPTFTSNRQRPGPLTINRSSSFQ-LP-LQKLLFSAT 569
Query: 231 LTQDPNKLAQLDLHHPLFLTTGET----------------------------------RY 256
L+Q+P KL QL L P +TT + +Y
Sbjct: 570 LSQNPEKLTQLRLFQPRLITTATSSRAPPISAWHLDGEKEGVKEEGKEKDEGRTDFVGKY 629
Query: 257 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316
P L Y + C + KPL L L +L ++ + FT+SV++THRL LL G+ ++
Sbjct: 630 TTPVGLSEYFVQCTAGEKPLVLQHFLLNLYFKQVLCFTNSVQTTHRLYLLLKLMGD--VE 687
Query: 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 376
+ E+S QS R LK F+ GKIQ+LV SDAM RGMD+E V V++YD P ++KTYIH
Sbjct: 688 VSEFSSNLSQSERQNILKQFKAGKIQILVCSDAMARGMDIENVRCVISYDLPPHLKTYIH 747
Query: 377 RAGRTARAGQLGRCFTLLHKDEV 399
R GRTARAG+ G F+ + K E
Sbjct: 748 RVGRTARAGRGGTAFSFIRKKEA 770
>gi|443730193|gb|ELU15819.1| hypothetical protein CAPTEDRAFT_183322 [Capitella teleta]
Length = 576
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 165/446 (36%), Positives = 227/446 (50%), Gaps = 49/446 (10%)
Query: 2 GISSLFPVQVAVWQETIGP------------GLFERDLCINSPTGSGKTLSYALPIVQTL 49
G+ FPVQ + T+ G DLC ++ TGSGKTL+Y +PIVQ L
Sbjct: 132 GVKDFFPVQARLIPATMNSFDKQFPYALTKGGFRPSDLCCSAATGSGKTLAYVVPIVQAL 191
Query: 50 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
S R V +RALVVLP RDLA QV VF L V L G S +E ++ P
Sbjct: 192 SRRVVPAIRALVVLPVRDLAQQVYKVFCTYCAGTNLKVVLTAGYKSFENEQQQMTFGP-- 249
Query: 110 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 169
+ DI++ TPGRL+DH+ T+GF L L +LV+DE DRL++E
Sbjct: 250 ------------NGTKCPADIVITTPGRLVDHLIETKGFCLNELRFLVIDEADRLMKEFK 297
Query: 170 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
W VL++ + + + + T G + C G+ D P+ L K++ SA
Sbjct: 298 FDW---VLKVENAVYHHTYDTSVTS-----GHRFSPNLCSAA-GYDDYPHVGLQKLLFSA 348
Query: 230 TLTQDPNKLAQLDLHHPLFLTTGE-----------TRYKLPERLESYKLICESKLKPLYL 278
TL+Q+P L Q+ L P T E +Y P L + CE KPL L
Sbjct: 349 TLSQNPEVLQQMRLFQPRLFTASEGTDESSQMESINKYVTPASLNEMFIKCEENTKPLVL 408
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
L+ + + + FT+SV+STHRLCTLL G ++ ++E S + R KTLK F
Sbjct: 409 FHLIHTRKYRQVLCFTNSVKSTHRLCTLLRLMG--KVSVEELSSHISINKRQKTLKKFAA 466
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GKI+++V SD M RGMD+E V++YD P +I+ Y+HR GRTAR G G TLL +
Sbjct: 467 GKIEIVVCSDQMARGMDIENAKCVISYDVPNFIQNYVHRVGRTARGGHAGSAITLLDHSQ 526
Query: 399 VKRFKKLLQKADNDSCPIHSI-PSSL 423
VK FK++L KA ++ PS L
Sbjct: 527 VKFFKEMLHKAGKSDFKTETVKPSEL 552
>gi|336370797|gb|EGN99137.1| hypothetical protein SERLA73DRAFT_54272 [Serpula lacrymans var.
lacrymans S7.3]
Length = 514
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 169/447 (37%), Positives = 234/447 (52%), Gaps = 62/447 (13%)
Query: 1 MGISSLFPVQVAVW-----QETIGPGLFE-----RDLCINSPTGSGKTLSYALPIVQTLS 50
+GI+ LF VQ + ++ GL+ RD+C+++PTGSGKTL+Y LPIV+TLS
Sbjct: 80 LGITELFAVQTRLLPFLLPRDARKRGLYAPYAPPRDVCVSAPTGSGKTLAYVLPIVETLS 139
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
+R + LRALVVLPTRDL +QV++ F + GL VG A GQ S A E S+LI
Sbjct: 140 SRIITRLRALVVLPTRDLVMQVRETFEEVGKGRGLKVGTATGQHSFAHEQSQLIA----- 194
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
+DIL+ TPGRL+DH+N T F+L+HL +LV+DE DRLL +++Q
Sbjct: 195 -----------DRSSGKIDILICTPGRLVDHMNGTPNFSLQHLRFLVIDEADRLLAQSFQ 243
Query: 171 AWLPTVLQLT-----------RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD-KP 218
W+ V+ T R++ E F A P + I G+ D KP
Sbjct: 244 DWVARVVTATRPTTFPSSGTPRAEEEETFGCADGLAPPLLHAKYAIANT---YGYMDEKP 300
Query: 219 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET--------------RYKLPERLES 264
K++ SATL +DP KLA L L + + RY +P L
Sbjct: 301 SSSCQKLLFSATLPRDPGKLAGLQLRDVKYFVVQKARGGREEGVLDVVMERYTMPATLRE 360
Query: 265 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-------GELRIKI 317
+ ++C S KPL L L+Q +VFT S EST RL L F G L +
Sbjct: 361 HMIVCASSEKPLVLFDLVQRHKVRNGLVFTKSAESTARLVRLFELFEKAVAGEGRLGVVA 420
Query: 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 377
K YS R L+ F+ +IQ+LV SD ++RGMD+ V++VV+YD P ++ Y+HR
Sbjct: 421 KAYSSDLSVGERRGILEKFKAEEIQILVCSDLISRGMDMSHVSHVVSYDVPVDMRKYVHR 480
Query: 378 AGRTARAGQLGRCFTLLHKDEVKRFKK 404
GRTARAG+ G +TL+ + EV K
Sbjct: 481 VGRTARAGREGDAWTLVEEQEVSAVTK 507
>gi|426199228|gb|EKV49153.1| hypothetical protein AGABI2DRAFT_201250 [Agaricus bisporus var.
bisporus H97]
Length = 602
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 166/455 (36%), Positives = 241/455 (52%), Gaps = 61/455 (13%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE----------RDLCINSPTGSGKTLSYALPIVQTLS 50
+GI+ LF VQ A+ I + RD+CI++PTGSGKTL+YALPIV+ LS
Sbjct: 129 LGITELFAVQTALLPFLIPSSDVQHQLYLSTRPPRDVCISAPTGSGKTLAYALPIVEILS 188
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
+R + LRAL++LPTRDL QV++ F + GL +G A GQ S A E S+L+
Sbjct: 189 SRVLTQLRALIILPTRDLVAQVRETFEVLGKGRGLKIGTATGQHSFAHEQSQLVN----- 243
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D L S VDIL+ TPGRL+DH+N T FTL+HL +LV+DE DRLL +++Q
Sbjct: 244 -----DQTSSLLGGSSRVDILICTPGRLIDHMNGTPNFTLQHLRFLVIDEADRLLAQSFQ 298
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL-------- 222
WL VL R + + T+ + R PYP
Sbjct: 299 DWLAQVLAALRPHRTPNCVPGTQV--DSIPHPDTVAPYLLHR----LPYPHYPTFLTEVH 352
Query: 223 ----VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---------------YKLPERLE 263
K++ SATLT+DP K+A L+L P + ++R + +P L+
Sbjct: 353 ESSCQKLLFSATLTRDPGKIASLELREPKYFIVQKSRESDGQDRILSVVMEKFSIPSTLK 412
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR-------IK 316
+ L+CES KPL L+ L +VFT S EST RL L + F + R +
Sbjct: 413 -HMLVCESSQKPLMFFHLVFHLNVTDALVFTKSSESTARLVRLFDFFQKWRTAESGKSLV 471
Query: 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 376
++ YS R L+ F+ +I +L+ SD ++RG+D+ V++VV+YD P ++ Y+H
Sbjct: 472 VQAYSSDLSVGERKVILERFKAQEINILICSDLISRGIDISHVSHVVSYDVPVDMRKYVH 531
Query: 377 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
R GRTARAG+ G + L+ + E + FK +L+ AD+
Sbjct: 532 RVGRTARAGRSGDAWALVEEQEARYFKNMLRDADH 566
>gi|392573109|gb|EIW66250.1| hypothetical protein TREMEDRAFT_35235, partial [Tremella
mesenterica DSM 1558]
Length = 694
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 162/410 (39%), Positives = 239/410 (58%), Gaps = 40/410 (9%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D I++PTGSGKTL+YA+PI++ LS R + LRAL+VLPT+DL +QV++ +A L
Sbjct: 261 DYLISAPTGSGKTLAYAIPIIEILSARTITRLRALIVLPTKDLVVQVRETLELLAKGTDL 320
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQEL--QSAVDILVATPGRLMDHI 142
+G GQ S A E L+ ED+ ++EL S VDIL+ATPGRL+DH+
Sbjct: 321 KIGTIGGQHSFAHEQKVLV-------------EDLEIKELGGSSKVDILIATPGRLIDHL 367
Query: 143 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 202
+ T FTL+HL +LV+DE DRLL ++YQ WL VL+ TR ++N + +P +
Sbjct: 368 SQTPNFTLQHLRFLVIDEADRLLNQSYQDWLMMVLRHTRPTDDN-MALEREIMPDDHVAP 426
Query: 203 KTIRRCGV---ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---------- 249
+ CG+ D P + K++ SATLT+DP K+A L L+ P +
Sbjct: 427 LWMSACGLGDKSHSLLDPPEQQCQKLLFSATLTRDPAKVASLSLNSPRYYIIQSSLAQPS 486
Query: 250 --TTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCT 305
+ GE ++ +P L + LI +LKPL L+ L+ S ++FT SVES RL
Sbjct: 487 AHSIGE-QFAIPASLTEFMLILPPQLKPLNLIHLIHSPEYAVSSALIFTKSVESCVRLVK 545
Query: 306 LLNHF----GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
LL +F G ++ ++ Y+ R + R K L AF +G +Q+LV SD + RGMD+ V++
Sbjct: 546 LLEYFEVAFGGGKV-VQGYTSDMRPAERKKLLAAFGQGDVQLLVCSDLIARGMDLPTVSH 604
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
V++YD P ++ Y+HR GRTARAG+ G +TL+ K E FK +L+ A +
Sbjct: 605 VISYDIPLDMRKYVHRVGRTARAGRSGTAWTLVEKQEALHFKSILKSAGH 654
>gi|409078236|gb|EKM78599.1| hypothetical protein AGABI1DRAFT_74928 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 602
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 166/461 (36%), Positives = 242/461 (52%), Gaps = 73/461 (15%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE----------RDLCINSPTGSGKTLSYALPIVQTLS 50
+GI+ LF VQ A+ I + RD+CI++PTGSGKTL+YALPIV+ LS
Sbjct: 129 LGITELFAVQTALLPFLIPSSDVQHQLYLSTRPPRDVCISAPTGSGKTLAYALPIVEILS 188
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
+R + LRAL++LPTRDL QV++ F + GL +G A GQ S A E S+L+
Sbjct: 189 SRILTQLRALIILPTRDLVAQVRETFEVLGKGRGLKIGTATGQHSFAHEQSQLVN----- 243
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D L S VDIL+ TPGRL+DH+N T FTL+HL +LV+DE DRLL +++Q
Sbjct: 244 -----DQTSSLLGGSSKVDILICTPGRLIDHMNGTPNFTLQHLRFLVIDEADRLLAQSFQ 298
Query: 171 AWLPTVLQL------------TRSDNENRFSDASTFL------PSAFGSLKTIRRCGVER 212
WL VL TR D+ S +L P L + +
Sbjct: 299 DWLAQVLTALRPHRTQNCVPGTRVDSIPHPDTVSPYLLHRLPFPHYSTFLTEVHESSCQ- 357
Query: 213 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---------------RYK 257
K++ SATLT+DP K+A L+L P + ++ ++
Sbjct: 358 -----------KLLFSATLTRDPGKIASLELREPKYFIVQKSSESDGQDHILSVVMEKFS 406
Query: 258 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--- 314
+P L+ + L+CES KPL L+ L +VFT S EST RL L + F + R
Sbjct: 407 IPSTLK-HMLVCESSQKPLMFFHLVFHLNVTDALVFTKSSESTARLVRLFDFFQKWRAVE 465
Query: 315 ----IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
+ ++ YS R L+ F+ +I +L+ SD ++RG+D+ V++VV+YD P
Sbjct: 466 SGKSLVVQAYSSDLSVGERKVILERFKAQEINILICSDLISRGIDISHVSHVVSYDVPVD 525
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
++ Y+HR GRTARAG+ G + L+ + E + FK +L+ AD+
Sbjct: 526 MRKYVHRVGRTARAGRSGDAWALVEEQEARYFKNMLRDADH 566
>gi|432947382|ref|XP_004084018.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Oryzias latipes]
Length = 632
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 161/431 (37%), Positives = 230/431 (53%), Gaps = 51/431 (11%)
Query: 2 GISSLFPVQVAV---------WQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
G+ FPVQ V +G G F RD+C+++PTGSGKTL++ LP++Q L
Sbjct: 181 GVHHFFPVQAEVIPAILDAAQHGSLLGRGGFRPRDICVSAPTGSGKTLAFVLPVIQVLMT 240
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RAL VLPT++LA QV VF A L V + GQ S A E + L ++
Sbjct: 241 RMVCEVRALAVLPTKELAQQVYKVFGTYAEGTPLRVLMLAGQKSFAAEQASL---SEIRG 297
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G+ +S DI+VATPGRL+DHIN G L+ L +L++DE DR++ +Q+
Sbjct: 298 GV----------RRSTADIIVATPGRLVDHINKNSGLCLQQLRFLIIDEADRMIDSMHQS 347
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V TR+ + P L + P L K++ SATL
Sbjct: 348 WLSLV---TRA----------VYGPETTKLLGRTEPACITAASLSPPQMPLQKLLFSATL 394
Query: 232 TQDPNKLAQLDLHHPLFLTTGET-------------RYKLPERLESYKLICESKLKPLYL 278
TQ+P KL QL LH P ++ + R+ P+ L Y + C KPL +
Sbjct: 395 TQNPEKLQQLGLHQPRLFSSAHSNDPPADATALKPERFDFPQGLTEYYVPCTLSKKPLLI 454
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ + + + FT+S E+ HRL L+ FG ++ E+S + R +TLK F +
Sbjct: 455 LHFILRMKLHPILCFTNSRETAHRLYLLVQLFGG--VQAAEFSSRLSPNERKRTLKEFDQ 512
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GKIQ+L+S+DA RG+D+ GV VVNYD P +I+ YIHR GRTARAG+ G FT L + +
Sbjct: 513 GKIQLLISTDAAARGIDIPGVKCVVNYDAPQFIRMYIHRVGRTARAGKSGLAFTFLLRVQ 572
Query: 399 VKRFKKLLQKA 409
KRF +++Q+A
Sbjct: 573 EKRFLQMVQEA 583
>gi|353239546|emb|CCA71453.1| related to DBP6-ATP-dependent RNA helicase [Piriformospora indica DSM
11827]
Length = 1596
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 170/453 (37%), Positives = 237/453 (52%), Gaps = 54/453 (11%)
Query: 1 MGISSLFPVQVAVW--------QETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLS 50
+GI LF VQ + ++++ P RD+C ++PTGSGKTL+YA+PI + LS
Sbjct: 1114 LGIKELFAVQTVLLPFLLPEDLEQSMLYQPSHPPRDVCASAPTGSGKTLAYAIPITEMLS 1173
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R V LRALVV+PTRDL QV++ F A L +G+A GQ S A E +
Sbjct: 1174 TRIVTRLRALVVVPTRDLVQQVRETFEACGKGTKLQIGIATGQHSFAHE----------Q 1223
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
A I D + +S VDIL+ TPGRL+DHIN T FTL+HL +LV+DE DRLL +++Q
Sbjct: 1224 AQIVGDISERSLGGRSRVDILICTPGRLIDHINGTPNFTLQHLRFLVIDEADRLLNQSFQ 1283
Query: 171 AWLPTVLQLTR--SDNENRFS--DASTFLPSAFGSLKTIRRCGVERGFKD---KPYPRLV 223
WL VL S N R S D S P G T V D P
Sbjct: 1284 EWLKQVLNAISLPSPNGPRLSEGDRSELFPVPDGIAPTWLSALVPTSPTDIDEAPRSSCQ 1343
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFL------------------TTGETRYKLPERLESY 265
K++ SATLT+DP K+ +L L P + T ++ P L +
Sbjct: 1344 KLLFSATLTRDPAKIVELQLRDPKYFIVKGISASQEVGDAMDVNVTHVESFETPGTLREW 1403
Query: 266 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF---------GELRIK 316
++CES KPL L L +VFT S EST RL LL +F G +I
Sbjct: 1404 MIVCESINKPLLLFYLAHKQQISDMLVFTKSAESTTRLLRLLGYFEDAMAEREVGSKKII 1463
Query: 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 376
+ +S S R L+ F+ +I +L+ SD ++RG+D+ V++VVNYD P ++ YIH
Sbjct: 1464 AEAFSSDLAPSQRKTVLEKFKAKQIDMLICSDLVSRGIDIPHVSHVVNYDIPVDVRKYIH 1523
Query: 377 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
R GRTARAG+ G ++L+ + E+ FK ++++A
Sbjct: 1524 RVGRTARAGREGDAWSLVEEQEMHHFKLMMKEA 1556
>gi|260801978|ref|XP_002595871.1| hypothetical protein BRAFLDRAFT_84239 [Branchiostoma floridae]
gi|229281121|gb|EEN51883.1| hypothetical protein BRAFLDRAFT_84239 [Branchiostoma floridae]
Length = 806
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 176/433 (40%), Positives = 238/433 (54%), Gaps = 55/433 (12%)
Query: 2 GISSLFPVQVAVWQETIG----------PGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
G+ +LFPVQ V + G D+C+++PTGSGKTL++ +P+VQ L
Sbjct: 325 GVENLFPVQHQVIPAVLEDAEDGTIMGRAGFRPSDICVSAPTGSGKTLAFVIPVVQALLQ 384
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT+DLA+Q+ VF L V GQ S+A E + L+K E+
Sbjct: 385 RVVCEVRALVVLPTKDLAVQIYKVFNHYTSGSRLKVANCSGQKSLAAERNALVK----ES 440
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
Y QS DI+VATPGRL+DHI T GF L HL YLV+DE DR+L + Q
Sbjct: 441 HGVY---------QSLADIVVATPGRLVDHIEKTPGFNLRHLRYLVIDEADRMLDQIKQD 491
Query: 172 WLPTVLQLTRSDNENRFS-DASTFLP-----------SAFGSLKTIRRCGVERGFKDKPY 219
WL V TR+ E + S + LP +A G L + Y
Sbjct: 492 WLAKV---TRAVYEGQGSTEEKPGLPMMLWAGVLGGRTAPGPLTAANAARM--------Y 540
Query: 220 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 279
L K++ SATL+Q+P KL QL+L HP T+ R+K +R + S+ K ++
Sbjct: 541 QPLQKLLFSATLSQNPEKLQQLNLFHPRLFTSV-VRHK--QRKQETASAGSSEEKGTFVG 597
Query: 280 ALLQSLGEEK---CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
G +K + FT S+ESTHRL L FG + + E+S R+K L F
Sbjct: 598 KFTTPAGLQKFQHVLCFTGSLESTHRLYLLAKLFG--GVTVAEFSSNLPPDRRTKILTKF 655
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
R GKIQ++V SDAM RGMDVEGV V++YD P Y+KTYIHR GRTARAG+ GR F+L+ +
Sbjct: 656 RTGKIQLIVCSDAMARGMDVEGVEVVISYDVPPYVKTYIHRVGRTARAGKEGRAFSLVLQ 715
Query: 397 DEVKRFKKLLQKA 409
+E + ++ LQ+A
Sbjct: 716 EE-EFLQEFLQEA 727
>gi|91092858|ref|XP_969365.1| PREDICTED: similar to ATP-dependent RNA helicase DDX51 [Tribolium
castaneum]
gi|270003080|gb|EEZ99527.1| hypothetical protein TcasGA2_TC000109 [Tribolium castaneum]
Length = 601
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 160/427 (37%), Positives = 230/427 (53%), Gaps = 54/427 (12%)
Query: 2 GISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 56
G+ LFPVQ V W +F RD+C+++PTGSGKTL++ LP+VQTL VR
Sbjct: 149 GVKYLFPVQAEVIPWVLQSRQNADIMFPRDVCVSAPTGSGKTLAFVLPVVQTLKQFTVRK 208
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
+RALV+LPT+DLA QV F + VGL G+ E +L+ C+
Sbjct: 209 IRALVILPTQDLAEQVFKSFKLYTQGTRIEVGLVSGKQMFQAEQKQLV-----YFNECFG 263
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
S +DILV T GRL++H+ +T GF L+ L +L++DE DR+L WL
Sbjct: 264 -------FVSKIDILVCTAGRLVNHLKSTNGFNLQALEFLIIDEADRVLESVQDDWL-YH 315
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
L+ +NR K + C ++R + P+ K++ SATLTQDP
Sbjct: 316 LEKHIYTIQNR---------------KVLNVCTLQR----QRAPQ--KLLFSATLTQDPE 354
Query: 237 KLAQLDLHHPLFLTTG---------------ETRYKLPERLESYKLICESKLKPLYLVAL 281
K+ +L L P T+ +Y P+ L ++C +KPL L A
Sbjct: 355 KIEKLSLFQPKLFTSSVVENSNESEEKPMILTGKYTTPKELTEKYIVCSKDVKPLVLYAF 414
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
L+ K +VFT SVES HRL LL + R+KI+E S + R + + +F +G++
Sbjct: 415 LKRENLTKTLVFTHSVESAHRLKILLKSLFKKRLKIEEISSNLKGKSRDEFISSFTKGEV 474
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+L+ +D + RG+D+ GVN V++Y P Y+KTYIHRAGRTARAG+ G TLLH+++V
Sbjct: 475 DLLICTDFLARGIDLPGVNCVISYSAPKYLKTYIHRAGRTARAGESGLAVTLLHEEQVPA 534
Query: 402 FKKLLQK 408
FK LL+K
Sbjct: 535 FKTLLKK 541
>gi|281209875|gb|EFA84043.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 559
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 229/412 (55%), Gaps = 39/412 (9%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+C+ +PTGSGKTL+Y LPIVQ L NR VR LR + ++PT DL Q + F +I L
Sbjct: 77 DICVCAPTGSGKTLAYVLPIVQKLYNRVVRRLRVICIVPTHDLVTQTEATFKSITKGTDL 136
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
V +G S A E S ++ ++ E+ QS VDI+V TPGRL++H+N T
Sbjct: 137 VVE-TLGLRSFALEQSLIVSSH-------FNDENNSVTYQSLVDIIVCTPGRLVEHLNET 188
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS---------DASTFLP 196
GF L+HL YLV+DE DRLLRE++Q WL V+ + E S S +
Sbjct: 189 PGFDLQHLTYLVIDEADRLLRESFQYWLEKVMDSSSVSKERLISIGSRGDISISDSKYNN 248
Query: 197 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---E 253
++ G R FK+ R++K++LSAT++ +P K++ L L+ PL+ + E
Sbjct: 249 TSSGGSSNFRSHIDHLSFKE---SRVIKLLLSATMSYNPEKISLLKLNAPLYFQSNKISE 305
Query: 254 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK-------------CIVFTSSVEST 300
+Y +P+ L+ + C S KPL L++++ ++ + K I FT+S++ T
Sbjct: 306 LKYTIPDTLKESYIACHSDQKPLALISVIGNIFKSKQQQQTDQNDNIARIICFTNSIDIT 365
Query: 301 HRLCTLLNHFGEL---RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
RL TLL GE+ ++K +YS RS LK F G I VL+ SD + RGMD+
Sbjct: 366 QRLNTLLGFIGEVDGVKLKPAQYSSSINSIERSNLLKLFANGDINVLICSDILARGMDLP 425
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
V+ V+NY+ P Y+HR GRTARAG+ G +T++ ++E F +++KA
Sbjct: 426 NVDAVINYNAPPSAVLYVHRVGRTARAGRKGSAYTIVAREEKSYFTNMIKKA 477
>gi|358055147|dbj|GAA98916.1| hypothetical protein E5Q_05604 [Mixia osmundae IAM 14324]
Length = 2128
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 162/444 (36%), Positives = 231/444 (52%), Gaps = 46/444 (10%)
Query: 2 GISSLFPVQVAVWQETIG--------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 53
G+ +LF VQ+A Q +G P RDLC+N+PTGSGKTL+Y LPIVQ LS
Sbjct: 322 GLETLFAVQMATCQHILGTEQTRSLYPRYPPRDLCVNAPTGSGKTLAYVLPIVQMLSTTI 381
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V +RAL++LPTRDL QVKD F L +G A G S E +A +
Sbjct: 382 VTRMRALIILPTRDLVTQVKDTFEIYCKGTSLRIGTATGSQSFKKE----------QAIL 431
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
D S VDIL+ATPGRL+DH+ + +L+HL +LV+DE DRLL +++Q WL
Sbjct: 432 VGDSAHYYPGGSSKVDILIATPGRLIDHLTQSPNLSLQHLRFLVMDEADRLLNQSFQDWL 491
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG---FKDKPYPRLVKMVLSAT 230
V R S+ + LP A + +++ + P L +++ SAT
Sbjct: 492 QVVQAHLRYPPPT--SEDAAELPLAGDASAAPHVLALQQATTSMSETPIQPLQQILCSAT 549
Query: 231 LTQDPNKLAQLDLHHPLFLTTGETR------------YKLPERLESYKLICESKLKPLYL 278
L++DP +++ L+L +P+F+ E R + LP L+ + L+ S KPL L
Sbjct: 550 LSRDPRQVSALNLRNPVFVAVREARDDQMDELETEDNFALPATLKEHMLVTSSGSKPLML 609
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-----------GELRIKIKEYSGLQRQS 327
LL + + FT SVES RL L+ F K+KE+SG
Sbjct: 610 FYLLHAKSLSNVLCFTKSVESAQRLAKLVELFETEYASRSEGADNQGFKVKEFSGSLPVP 669
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
R K L AF G+I +L+ SD + RG+D+ V +V++YD P ++ Y+HR GRTARAG+
Sbjct: 670 QRKKILAAFVAGEIDMLICSDIIARGIDLPSVAHVISYDVPVDMRKYVHRVGRTARAGRP 729
Query: 388 GRCFTLLHKDEVKRFKKLLQKADN 411
G ++L+ E FK LL A +
Sbjct: 730 GDAWSLVESQEANFFKALLTDAQH 753
>gi|301604620|ref|XP_002931939.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Xenopus (Silurana)
tropicalis]
Length = 660
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 173/438 (39%), Positives = 234/438 (53%), Gaps = 60/438 (13%)
Query: 3 ISSLFPVQV----AVWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR 52
+ LFPVQ A+ T +G G + D+C+++PTGSGKTL++ +PIVQ L R
Sbjct: 210 VKYLFPVQAEVIPAILDSTCHGFLLGKGGYRPSDVCVSAPTGSGKTLAFVIPIVQALLQR 269
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V +RALVVLPT++LA QV VF +GL V + GQ S E LI + G
Sbjct: 270 VVCEVRALVVLPTKELAQQVCKVFNTYVDGMGLKVVMVTGQKSFLKEQESLIHKTAF--G 327
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
C S DILV TPGRL+DHI T GF L HL +LV+DE DR++ Q W
Sbjct: 328 FC-----------SLADILVCTPGRLVDHIQQTEGFNLRHLRFLVIDEADRMIDSMNQDW 376
Query: 173 LP----TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 228
L V Q+ +D+ N F G L C P L K++ S
Sbjct: 377 LSHVTKAVFQVV-ADSPNML-----FTRKEPGILTAASSC--------LPQTPLQKLLFS 422
Query: 229 ATLTQDPNKLAQLDLHHPLFLTT---------GETR--------YKLPERLESYKLICES 271
ATLTQ+P KL QL L+ P T+ ET+ + LPE L Y + C
Sbjct: 423 ATLTQNPEKLKQLGLYQPRLFTSKQKGTSDDSSETQMESSTSGNFSLPEGLTHYYIPCNL 482
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 331
KPL L+ L SL + + FT+S +++HRL L+ FG I + E+S R K
Sbjct: 483 NSKPLILLHFLLSLRFSRVLCFTNSRDASHRLYLLVRSFG--GISVAEFSSRLSPGERKK 540
Query: 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
TLK F +GK+Q+L+S+DA RG+D++GV V+NYD P +I+TY+HR GRTARAG+ G F
Sbjct: 541 TLKEFEQGKVQLLISTDATARGIDIKGVKCVINYDAPQFIRTYVHRVGRTARAGKAGLAF 600
Query: 392 TLLHKDEVKRFKKLLQKA 409
T+L K + + +L+ A
Sbjct: 601 TMLLKVQENPYFSMLRDA 618
>gi|195127527|ref|XP_002008220.1| GI11933 [Drosophila mojavensis]
gi|193919829|gb|EDW18696.1| GI11933 [Drosophila mojavensis]
Length = 670
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 169/435 (38%), Positives = 236/435 (54%), Gaps = 57/435 (13%)
Query: 1 MGISSLFPVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ AV W + P F RD+C+++PTGSGKTL++A+PIVQ L+ R V+
Sbjct: 161 MKIKRLFPVQTAVIPWILEAQAKPEPFRPRDICVSAPTGSGKTLAFAIPIVQLLAKR-VQ 219
Query: 56 C-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
C +RALVVLP +LALQV VF+A+ L V L Q + DE +L+++ K G+
Sbjct: 220 CKVRALVVLPVAELALQVYKVFSALCSLTELEVCLLSKQHRLEDEQDKLVEQYK---GVY 276
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
Y S VDI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 277 Y----------SKVDIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLY 326
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
+ RS + + P + L + +P+ K++ SATL+QD
Sbjct: 327 HLDAHVRSTADQLLTGVQA--PLCYQELLN--------SWGKQPH----KLLFSATLSQD 372
Query: 235 PNKLAQLDLHHPLFLTTGET----------------------RYKLPERLESYKLICESK 272
P KL L L P TT T +Y P L + E +
Sbjct: 373 PEKLQNLRLFQPKLFTTTLTMPVLQPALDNGELPDQTSTFIGKYTTPAELTEQYCVTEMR 432
Query: 273 LKPLYLVALLQSLGEEKCIVFTSSVESTHRL-CTLLNHFGELRIKIKEYSGLQRQSVRSK 331
LKPL L A++ ++ + FT+S ++ +RL C L++ F + I++KE S + R
Sbjct: 433 LKPLTLYAMVLLNNWKRFLCFTNSADTANRLACVLVHLFKDSTIRVKELSAKMSATKRGH 492
Query: 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
L F G I LV SDA+ RG+DV V+ VV+Y+ P +IKTYIHR GRTARAGQ G
Sbjct: 493 RLSEFARGNIHGLVCSDALARGIDVPNVDVVVSYEAPRHIKTYIHRVGRTARAGQKGTAI 552
Query: 392 TLLHKDEVKRFKKLL 406
TLL + FKK+L
Sbjct: 553 TLLTDKDQANFKKML 567
>gi|294464732|gb|ADE77873.1| unknown [Picea sitchensis]
Length = 230
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/224 (60%), Positives = 171/224 (76%), Gaps = 5/224 (2%)
Query: 49 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 108
LS R ++ LRALVVLPTRDLA+QVK VF AIAPAVGLSVGLAVGQ+S+A + ++ I+ +
Sbjct: 2 LSRRTLQYLRALVVLPTRDLAIQVKTVFDAIAPAVGLSVGLAVGQTSVAADTAQFIRHRR 61
Query: 109 LEAGICYDPEDV-LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 167
DP+ + + +S+VDIL+ATPGRLMDHI++TRGFTLEHLCYLVVDETDRLLRE
Sbjct: 62 NSMQNLSDPKGMEMSTSESSVDILIATPGRLMDHISSTRGFTLEHLCYLVVDETDRLLRE 121
Query: 168 AYQAWLPTVLQLTRSD-NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 226
AYQ WLP VL +S+ +ENR + S+ + + G + T RR + RGFK K PR++KM+
Sbjct: 122 AYQYWLPNVLSTAQSNHHENRGATWSS-VSARLGPITTFRRDVLGRGFKTKTDPRVMKMI 180
Query: 227 LSATLTQDPNKLAQLDLHHPLFL--TTGETRYKLPERLESYKLI 268
LSATLT+DP+KL+QL LH PLFL T E RYKLPE+LE Y L+
Sbjct: 181 LSATLTRDPSKLSQLALHQPLFLASTGAEKRYKLPEQLEIYTLV 224
>gi|195014606|ref|XP_001984044.1| GH15223 [Drosophila grimshawi]
gi|193897526|gb|EDV96392.1| GH15223 [Drosophila grimshawi]
Length = 675
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 235/434 (54%), Gaps = 55/434 (12%)
Query: 1 MGISSLFPVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ AV W + P F RD+C+++PTGSGKTL++A+PIVQ L+NR
Sbjct: 158 MKIERLFPVQRAVIPWILEAQSKPAPFRPRDICVSAPTGSGKTLAFAIPIVQLLANRVEC 217
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALVVLP +LALQV VF+ + L V L Q + DE +L+++ K G+ Y
Sbjct: 218 KVRALVVLPVAELALQVYKVFSVLCSKTELEVCLLSKQHRLEDEQEKLLEQYK---GVYY 274
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S VDI+V TPGRL+DH++AT GF L+ L +LV+DE DR++ +Q WL
Sbjct: 275 ----------SKVDIVVTTPGRLVDHLHATEGFCLKSLQFLVIDEADRIMDAVFQNWLYH 324
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ R+ + + P + L + +P+ K++ SATL+QDP
Sbjct: 325 LDSHVRTTADQLLTGVQA--PLCYQELLN--------SYGKQPH----KLLFSATLSQDP 370
Query: 236 NKLAQLDLHHPLFLTTGET----------------------RYKLPERLESYKLICESKL 273
KL L L P TT T +Y P L + E +L
Sbjct: 371 EKLQNLRLFQPKLFTTVFTLPVLPSALDIAELPEQSSQFIGKYTTPTELTEQYCVTELRL 430
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKT 332
KPL L ++Q+ G ++ + FT+S ++ RL +L H F I ++E S + VR++
Sbjct: 431 KPLTLYTMVQTYGWKRFLCFTNSADTADRLAFVLKHLFQGSPITVEELSANMKVGVRARR 490
Query: 333 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
L F +G I LV SDA+ RG+DV V+ V++Y+ P +IKTYIHR GRTARAGQ G T
Sbjct: 491 LADFAKGSIHGLVCSDALARGIDVPNVDIVLSYEAPRHIKTYIHRVGRTARAGQKGTAIT 550
Query: 393 LLHKDEVKRFKKLL 406
LL + + FKK+L
Sbjct: 551 LLTEKDQAPFKKML 564
>gi|390594629|gb|EIN04039.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 636
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 242/477 (50%), Gaps = 76/477 (15%)
Query: 1 MGISSLFPVQVAV----------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 50
+GI LF VQ A+ + P RD C+++PTGSGKTL+Y +PIV+ L+
Sbjct: 134 LGIGELFAVQTALLPFLLPSSPAQRALYMPYDPPRDACVSAPTGSGKTLAYVIPIVEVLA 193
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
+R V LRALVVLPTRDL QV++ F A+ GL + A GQ S A E ++L+
Sbjct: 194 SRIVTRLRALVVLPTRDLVAQVRETFEAVGKGRGLKIATATGQHSFAHEQTQLMA----- 248
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D L S VD+L+ TPGRL+DH+ T FTL+HL +LV+DE DRLL + +Q
Sbjct: 249 -----DRSKPLLGGSSKVDVLICTPGRLIDHLEGTPNFTLQHLRFLVIDEADRLLAQLFQ 303
Query: 171 AWLPTVLQLTRSDNENRFSDA-----------STFLPSAFGSLKTI---RRCGVERGFKD 216
WL VL TR + + A + L AF SL + G+ F +
Sbjct: 304 DWLAKVLAATRPPSSLSSAFALSSPSSSVVPHADALAPAFASLLGLSPSSPSGLLTEFDE 363
Query: 217 KPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGE---------------------- 253
K++ SATLT+DP KLA L L P F+ GE
Sbjct: 364 PKASSCQKLLFSATLTRDPGKLAALALREPRYFVVAGERKRAQGAEEREEEAGKMDGVVD 423
Query: 254 ---TRYKLPERLESYKLICESKLKPLYLVALLQSLG----EEKCIVFTSSVESTHRLCTL 306
++ +PE LE + L+ + KPL L+ L+ + G +VF S E+ RL
Sbjct: 424 FVMEKFSVPETLEEHYLVTSAAQKPLALMYLVHARGVGADSGGVLVFAKSAEAVARLVKF 483
Query: 307 LNHF------------GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ F G R+ +K YS R L+ F+ KI +LV SD + RGM
Sbjct: 484 VEFFEEARVDALPADTGRRRVSVKAYSSDLAPGERRAILEGFKARKIDMLVCSDLVARGM 543
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
D+ V +VV+YD P ++ Y+HR GRTARAG+ G ++L+ + E + FK++L++AD+
Sbjct: 544 DISHVEHVVSYDAPVDVRKYVHRVGRTARAGRKGCAWSLVEEQEARWFKEMLREADH 600
>gi|389750259|gb|EIM91430.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 725
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 165/469 (35%), Positives = 234/469 (49%), Gaps = 91/469 (19%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER----------DLCINSPTGSGKTLSYALPIVQTLS 50
+GI LF VQ + + G F+R D+C+++PTGSGKTL+Y LPI++ LS
Sbjct: 263 LGIEELFAVQTTLLPLLLPSGPFKRSLYLPYDPPQDICVSAPTGSGKTLAYVLPIIEILS 322
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R V LRAL+VLPTRDL QV++ F AI GL +G A GQ S A E ++L
Sbjct: 323 ARIVTRLRALIVLPTRDLVTQVRETFEAIGKGRGLKIGTATGQHSFAHEQNQL------- 375
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
V + VD+L+ TPGRL+DH+N T F+L+HL +LV+DE DRLL +++Q
Sbjct: 376 ---------VADKSAHKVDVLICTPGRLIDHLNGTPNFSLQHLRFLVIDEADRLLAQSFQ 426
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSA----FGSLKTIRRCGVERGFKDKPYPRLV--- 223
WL VL TR T PSA GS + G++ + D P +
Sbjct: 427 DWLAQVLAATRP------PPVPTHDPSAPASTSGSFTVPQDNGIDIPYPDALSPSFLHLL 480
Query: 224 --------------------KMVLSATLTQDPNKLAQLDLHHPLFL-----TTGE----- 253
K++ SATL DP K+ L+L ++ GE
Sbjct: 481 RPPSFAMITDIDTPRESSCQKLLFSATLMSDPGKIKALELRDAKYIVVQGQANGEGVLGV 540
Query: 254 --TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R+ +P L + L+ S KPL L L+ + + +VFT S EST RL L F
Sbjct: 541 VMERFSMPATLTEHMLVVPSSQKPLMLFHLVHAHNVKNALVFTKSAESTGRLVRLFQFFE 600
Query: 312 ELRIKIKEYSGLQ----RQSVRSKTLKAF----------------REGKIQVLVSSDAMT 351
RI+ + S + Q R +KA+ R+G + +LV SD ++
Sbjct: 601 RARIQAQSQSSMDVDRSGQDAREVVVKAYSSDLGAAERRGLLEKLRDGTVDILVCSDLVS 660
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
RG+D+ V +VV+YD P I+ Y+HR GRTARAG+ G +TL+ + EV+
Sbjct: 661 RGIDISIVQHVVSYDAPVDIRKYVHRVGRTARAGRDGDAWTLVEEQEVR 709
>gi|194750630|ref|XP_001957633.1| GF10505 [Drosophila ananassae]
gi|190624915|gb|EDV40439.1| GF10505 [Drosophila ananassae]
Length = 683
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 237/434 (54%), Gaps = 55/434 (12%)
Query: 1 MGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W ++ P RD+C+++PTGSGKTL++A+PIVQ L+NR
Sbjct: 156 MKIKRLFPVQREVIPWILEAQSKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLANRVEC 215
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALVVLP +LALQV V +A+ L V L Q + DE +L++ L G Y
Sbjct: 216 KIRALVVLPVAELALQVYQVISALCNKTELEVCLLSKQHKLEDEQEKLVE---LYKGKYY 272
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S VDI+V TPGRL+DH++AT+GF L++L +L++DE DR++ +Q WL
Sbjct: 273 ----------SKVDIVVTTPGRLVDHLHATKGFCLKNLKFLIIDEADRIMDAVFQNWLYH 322
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + + A T P + L++ F ++P+ K++ SATL+QDP
Sbjct: 323 LDSHVKETTDQLL--AGTQAPLCYAELQS--------SFGNQPH----KLLFSATLSQDP 368
Query: 236 NKLAQLDLHHP-LFLT--------TGET-------------RYKLPERLESYKLICESKL 273
KL L L P LF T TGE +Y P L I E +L
Sbjct: 369 EKLQNLRLFQPRLFTTVMPVLREPTGEEGDAEADTDGQFLGKYTTPAELTEQICITEMRL 428
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKT 332
KPL L AL++ ++ + FT+S + RL ++ F K+ E SG VR +
Sbjct: 429 KPLTLYALVEKYKWKRFLCFTNSTDQASRLAFVMATLFENSETKVAELSGNLSALVRKQN 488
Query: 333 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
LK+F GKI L+ SDA+ RG+DV ++ V++Y+ P +IKT+IHR GRTARAG+ G T
Sbjct: 489 LKSFANGKINGLICSDALARGIDVADIDVVLSYEAPRHIKTHIHRVGRTARAGRKGTAVT 548
Query: 393 LLHKDEVKRFKKLL 406
LL + + FKK+L
Sbjct: 549 LLTEQDQAAFKKML 562
>gi|325188363|emb|CCA22900.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 496
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 163/431 (37%), Positives = 242/431 (56%), Gaps = 50/431 (11%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D CI++PTGSGKT +Y +PI+ L R + LRAL+V+PTRDLA QV V + + L
Sbjct: 61 DFCISAPTGSGKTFTYLIPILLQLQQRIICRLRALIVVPTRDLATQVHQVASVLCGGTKL 120
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
+ GQ++ E + +L + S +DIL+ATPGRL+DH+ T
Sbjct: 121 KCAVVTGQANFGQE------------------QRLLSDTHSGIDILIATPGRLVDHLEQT 162
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
GFTL+HL +L+VDE DRLL ++YQ W+ V Q + +S S +L I
Sbjct: 163 NGFTLQHLQFLIVDEADRLLTQSYQDWIAKVYQ-------SVYSTVSAVPLRPEDNLVAI 215
Query: 206 RRCGVERGFKDKPYPRL--VKMVLSATLTQDPNKLAQLDLHHPLFL----TTGE------ 253
R G ++ R+ ++++LSATLT++P+KLA + +H+ L + GE
Sbjct: 216 RTIRTANGIQNHKQIRVPFIRVLLSATLTENPSKLALIGMHYARVLKIKGSEGEDSMPKA 275
Query: 254 ---------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 304
+ Y+ PE+LE + + C+S KPL L+ LL + ++ ++FTSSV +THRL
Sbjct: 276 QTECELDADSVYETPEKLEEWMIECDSDSKPLRLIQLLLTFKDQMTLIFTSSVNATHRLT 335
Query: 305 TLLN----HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
LL + + ++EYS R + ++G ++LV SDAM RGMD++ V
Sbjct: 336 RLLQLVFKEHSDDDVGVQEYSSSLTLQQRRTLVAKCKKGLYRILVCSDAMARGMDLDDVV 395
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
NV+NYD P++IKTYIHRAGR ARAG+ GRC TL+ + + K +++LQKA +P
Sbjct: 396 NVINYDVPSFIKTYIHRAGRAARAGRFGRCVTLVKRGQTKGLQRMLQKAKKKKLLAFPLP 455
Query: 421 SSLIESLRPVY 431
I+ L PVY
Sbjct: 456 PEEIQQLVPVY 466
>gi|170098937|ref|XP_001880687.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644212|gb|EDR08462.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 510
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 167/440 (37%), Positives = 237/440 (53%), Gaps = 60/440 (13%)
Query: 1 MGISSLFPVQVAVW-----QETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLS 50
+GI+ LF VQ ++ + + L+ RD+CI++PTGSGKTL+Y LPIV+TLS
Sbjct: 80 IGITELFAVQTSLLPFLLPHDPLARRLYLPYDPPRDVCISAPTGSGKTLAYVLPIVETLS 139
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R V LRALVVLPTRDL QV++ F AI GL +G A GQ+S A E ++L+
Sbjct: 140 PRIVTRLRALVVLPTRDLVSQVRETFEAITNNRGLKIGTATGQNSFAHEQAQLVN----- 194
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
L S VDIL+ TPGRLMDH+ T F+L+HL +LV+DE DRLL +++Q
Sbjct: 195 -----------NVLPSKVDILICTPGRLMDHLMGTPNFSLQHLRFLVIDEADRLLAQSFQ 243
Query: 171 AWLPTVLQLTRSDNENRFSDASTF---------LPSAFGSLKTIRRCGVERGFKDKPYPR 221
WL VL TR ++ S +S L AF L+ + + ++
Sbjct: 244 DWLSRVLAATRPHVKSSSSSSSPSPHSLPESDGLSPAF--LQRLSLPDIPAFQHEEKETS 301
Query: 222 LVKMVLSATLTQDPNKLAQLDLHHPLFL-----TTGE-----TRYKLPERLESYKLICES 271
K++ SATLT+DP K+A L+L P + T GE Y +P L ++ ++ S
Sbjct: 302 CQKLLFSATLTRDPAKIAALNLRDPKYFIVQSRTDGEELHVLENYSMPPTL-THMIVSNS 360
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK------------IKE 319
KPL L+ +VFT S +ST RL L F E R++ +
Sbjct: 361 SKKPLVFFHLIHRQKMRNVLVFTKSADSTTRLVRLFEFFEEARLEKEPGTAGEESIIARA 420
Query: 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 379
YS S R L F+ +I +L+ SD ++RG+D+ V++VVNYD P ++ Y+HR G
Sbjct: 421 YSSDLPPSERKAILDQFKAQQIHILICSDLISRGIDITHVSHVVNYDVPVDMRKYVHRVG 480
Query: 380 RTARAGQLGRCFTLLHKDEV 399
RTARAG+ G +TL+ + EV
Sbjct: 481 RTARAGRAGDAWTLVEEQEV 500
>gi|195428034|ref|XP_002062080.1| GK17342 [Drosophila willistoni]
gi|194158165|gb|EDW73066.1| GK17342 [Drosophila willistoni]
Length = 681
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 168/432 (38%), Positives = 234/432 (54%), Gaps = 53/432 (12%)
Query: 1 MGISSLFPVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I FPVQ AV W + P F RD+C+++PTGSGKTL++A+PIVQ LS R
Sbjct: 158 MKIKRPFPVQRAVIPWILEAHAKPEPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVEC 217
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALVVLP +LALQV V +++ L V L Q + DE +L++ L G Y
Sbjct: 218 KVRALVVLPVAELALQVYKVISSLCSKTELEVCLLSKQHRLEDEQEKLLE---LYKGKYY 274
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S VDI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 275 ----------SKVDIVVTTPGRLVDHLHATKGFCLKSLQFLVIDEADRIMDAVFQNWLYH 324
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ R + S T P + L + F +P+ K++ SATL+QDP
Sbjct: 325 LDTHVRETTDQLLS--GTQAPLCYAELLS--------SFGKQPH----KLLFSATLSQDP 370
Query: 236 NKLAQLDLHHPLFLTT-----------GET---------RYKLPERLESYKLICESKLKP 275
KL L L P TT G+T +Y P L + E +LKP
Sbjct: 371 EKLQNLRLFQPKLFTTVLNLPVFQLNEGKTDSVQDQIVGKYTTPAELTEQYCVTEMRLKP 430
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLK 334
L L AL+Q ++ + F++S ++ +RL +L F I ++E SG RS TL
Sbjct: 431 LTLFALIQQYKWKRFLCFSNSADTANRLAFVLKILFQSYDITVEELSGNMSALERSTTLN 490
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F GKI L+ SDA+ RG+DV V+ V++Y+ +IKTYIHR GRTARAG+LG TLL
Sbjct: 491 NFARGKINGLICSDALARGIDVADVDIVISYEAARHIKTYIHRVGRTARAGKLGTAVTLL 550
Query: 395 HKDEVKRFKKLL 406
++ +FKK+L
Sbjct: 551 SDQDLDQFKKML 562
>gi|189217546|ref|NP_001121235.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Xenopus laevis]
gi|169642008|gb|AAI60740.1| LOC100158308 protein [Xenopus laevis]
Length = 678
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 169/434 (38%), Positives = 231/434 (53%), Gaps = 52/434 (11%)
Query: 3 ISSLFPVQVAVWQETI---------GPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR 52
+ FPVQ V + G G + D+C+++PTGSGKTL++ +PIVQTL R
Sbjct: 228 VKDFFPVQAEVIPAVLDSSCHGFLLGKGGYRPSDVCVSAPTGSGKTLAFVIPIVQTLLQR 287
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V +RALVVLPT++LA QV VF +GL V + GQ S E LI++
Sbjct: 288 VVCEVRALVVLPTKELAQQVCKVFNTYVDGMGLKVVMIAGQKSFLKEQESLIQKTAFG-- 345
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
S DILV TPGRL+DHI T GF L HL +LV+DE DR++ Q W
Sbjct: 346 -----------FSSLADILVCTPGRLVDHIQQTEGFNLRHLRFLVIDEADRMIDSMNQDW 394
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
L V + S F G L C P L K++ SATLT
Sbjct: 395 LNHVTKAVFRLEAG--SPNMLFTRKEPGILTAASSC-----LHQTP---LQKLLFSATLT 444
Query: 233 QDPNKLAQLDLHHP-LFLT--------TGETR--------YKLPERLESYKLICESKLKP 275
Q+P KL QL L+ P LF++ + ET+ + LPE L Y + C KP
Sbjct: 445 QNPEKLKQLGLYQPRLFISKQKGNPNDSSETQMEPSISGNFSLPEGLTHYYIPCNLNSKP 504
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
L L+ L SL + + FT+S +++HRL L+ FG I + E+S R +TLK
Sbjct: 505 LILLHFLLSLRFSRVLCFTNSRDASHRLYLLIRSFG--GIDVAEFSSRLSPGERKRTLKE 562
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F +GK+Q+LVS+DA RG+D++GV ++NYD P +I+TY+HR GRTARAG+ G FT+L
Sbjct: 563 FEQGKVQLLVSTDATARGIDIKGVKCIINYDAPQFIRTYVHRVGRTARAGKAGLAFTMLL 622
Query: 396 KDEVKRFKKLLQKA 409
K + K + +L+ A
Sbjct: 623 KVQEKPYFGMLRDA 636
>gi|330793373|ref|XP_003284759.1| hypothetical protein DICPUDRAFT_148567 [Dictyostelium purpureum]
gi|325085359|gb|EGC38768.1| hypothetical protein DICPUDRAFT_148567 [Dictyostelium purpureum]
Length = 565
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 160/431 (37%), Positives = 250/431 (58%), Gaps = 36/431 (8%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
+ ++ LFPVQ + I P + D+C+ +PTGSGKTL+YA+P+VQ + R VR +
Sbjct: 27 ISVTGLFPVQ-----QEIVPFISRAEGHDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRI 81
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
R +V++PT DL +QV+ F +I L V ++G E L+K Y
Sbjct: 82 RVVVIVPTHDLVIQVEKTFQSIIKGTDLIVQ-SLGVKPFHVEQKLLVKNHSYGEHALY-- 138
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+S VDI+V+TPGRL+DHIN T+GFTL++L YLV+DE DRLLR+++Q WL V+
Sbjct: 139 -------ESLVDIIVSTPGRLVDHINETQGFTLKYLNYLVIDEADRLLRQSFQDWLEIVI 191
Query: 178 QLTRSDNENRFSDASTFLP-SAFGSLKT-------IRRCGVERGFKDKPYPRLVKMVLSA 229
T + N + + + F+ + G+++ IR + +LVK++LSA
Sbjct: 192 DSTNNLNNDIGNSNNNFIKYNEKGNIEINELPINIIRDNNNQENHLCWSEFKLVKLLLSA 251
Query: 230 TLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVAL----L 282
T+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL L+ + L
Sbjct: 252 TMTYNPSKISLLQLNAPLFFTTSKTKEIKYTMPSTLKESYIITNPDQKPLVLLNIIYETL 311
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIKEYSGLQRQSVRSKTLKAFREG 339
++ +K I FT SV+ THRL +LL G ++ +EYS + RS L F+
Sbjct: 312 KNDSNKKIICFTKSVDITHRLNSLLKLIGSVDNIKFTCEEYSSALSTTERSSLLNRFKSN 371
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+I VL+ SD M+RGMD+ ++ V+NY+ P I Y+HR GRTARAG+ G +T++ K E+
Sbjct: 372 EINVLICSDIMSRGMDISDIDVVINYNSPPNITLYVHRVGRTARAGKHGFSYTIIDKQEI 431
Query: 400 KRFKKLLQKAD 410
+ + +++KA+
Sbjct: 432 RYYISMMKKAE 442
>gi|403159589|ref|XP_003320191.2| hypothetical protein PGTG_01103 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168160|gb|EFP75772.2| hypothetical protein PGTG_01103 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 893
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 170/478 (35%), Positives = 237/478 (49%), Gaps = 113/478 (23%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RDLC+++PTGSGKTLSY +PIV+TLS+R V LRAL+VLPTRDL LQVK+ F + G
Sbjct: 388 RDLCVSAPTGSGKTLSYIVPIVETLSSRVVCRLRALIVLPTRDLVLQVKNTFDCFSKGTG 447
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
L + GQ S E ++L G D L+ +VD+L+ATPGRL+DH+N
Sbjct: 448 LKAAIITGQHSFTKEQAQL--------GCSRD------GLEGSVDVLIATPGRLVDHLNH 493
Query: 145 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR----------------- 187
T GF+L+HLC+LV+DE D+LL ++ QAWL VL + + +
Sbjct: 494 TSGFSLQHLCFLVLDEADQLLNKS-QAWLHQVLSTSAASEVPKPMEHTEPIKSSFNHPKS 552
Query: 188 ---FSDASTFLPSAF--GSLKTIRRCGVERGFKD------------KPYPRLVKMVLSAT 230
F + F PS G L T+ + G + +P+ R+ ++ SAT
Sbjct: 553 LLGFRSSEPFEPSHLLDGPLSTVEMHNQDHGLTENLPIETYNPCRLRPF-RI--LLFSAT 609
Query: 231 LTQDPNKLAQLDLHHPLFLTTG-------------ETR--------------YKLPERLE 263
L +DP KLA L L HP+F+ +TR Y LP+ L+
Sbjct: 610 LRRDPVKLAHLGLRHPVFVKISSSSTTLVVDGDLDQTRRESGTIDFVDQLNGYCLPKTLK 669
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR---LCTLL-NHFGELR----- 314
Y ++ + LKPL LLQS EK + F S++ R LC L+ F L+
Sbjct: 670 QYLIVTRTDLKPLVFFKLLQSQRIEKALCFCKSIDGARRLTGLCRLMAEQFQALKSPNSD 729
Query: 315 -------------------------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
K++ +S R K L F+ G+I +L+ SD
Sbjct: 730 DPESNPKQKDQDQKDQKDDVDLVKLCKVECFSSDLSPVERKKLLNKFQSGEINMLICSDI 789
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
+ RG+D+ GV NV+NYD P IK Y+HR GRTARA + GR F+L+ E K K L+
Sbjct: 790 IARGIDITGVQNVINYDSPIDIKKYVHRVGRTARANEHGRAFSLVESQEAKFVKAFLK 847
>gi|66800335|ref|XP_629093.1| hypothetical protein DDB_G0293740 [Dictyostelium discoideum AX4]
gi|74896742|sp|Q54BD6.1|DDX51_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx51; AltName:
Full=DEAD box protein 51
gi|60462461|gb|EAL60682.1| hypothetical protein DDB_G0293740 [Dictyostelium discoideum AX4]
Length = 563
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 259/460 (56%), Gaps = 43/460 (9%)
Query: 2 GISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 58
I +LFPVQ V T G D+C+ +PTGSGKTL+YA+P+VQ + R VR +R
Sbjct: 34 SIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVR 88
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
V++PT DL +QV+ F +I L V L++G E LIK Y
Sbjct: 89 VAVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHSYGEHALY--- 144
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL V+
Sbjct: 145 ------ESLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVID 198
Query: 179 LTRSDNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP------RLVKMVLSATL 231
T ++ N+ + ++ G ++ + + ++ +LVK++LSAT+
Sbjct: 199 STNQHSDLNQQQEEQLIKYNSKGDIELFEKSISLKDNNNQMNHLCWSEFKLVKLLLSATM 258
Query: 232 TQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVALL-QSL-- 285
T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL L+ ++ +SL
Sbjct: 259 TYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYESLLK 318
Query: 286 ------GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAF 336
++K I FT SV+ THRL TLL G+ L+ +EYS R+ L F
Sbjct: 319 NNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYSSSLSTVERADLLSRF 378
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+ +I +L+ SD M+RGMD++ ++ V+NY+ P I Y+HR GRTARAG G +T++ K
Sbjct: 379 KLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIVDK 438
Query: 397 DEVKRFKKLLQKADNDSCPIHSI--PSSLIESLRPVYKSG 434
E+K + +++KA+ S +H + ++ E + YK G
Sbjct: 439 SEIKYYISMMKKAER-SQTLHCLKWKPNVYEKFQSSYKLG 477
>gi|328867619|gb|EGG16001.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 506
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 160/424 (37%), Positives = 230/424 (54%), Gaps = 43/424 (10%)
Query: 2 GISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 58
I L PVQ V T G D+ + +PTGSGKTLSY LPIVQ L R +R LR
Sbjct: 20 NIVDLMPVQSEIVPFIARTEG-----HDILVAAPTGSGKTLSYVLPIVQKLHKRIIRRLR 74
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
LV+LPT DL +Q + F +I L V ++G S+ E S L+ Y+ +
Sbjct: 75 VLVILPTHDLVIQTEKTFQSIIKGTNLVVE-SLGLKSLHLEQSLLVSS-------HYNQQ 126
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ +S VDI+V TPGRL++H+N T GF L+HL YLV+DE DRLLRE+YQ WL V+
Sbjct: 127 NDSVYYESLVDIVVTTPGRLVEHLNETPGFNLQHLTYLVIDEADRLLRESYQFWLERVID 186
Query: 179 LTRSDNENRFSDAST-----FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
T+S +R + S L S + SL G RL+K++LSAT+T
Sbjct: 187 STKSGTNDRSINLSNRGDMQILDSKYKSL------GSHLEHLSSKESRLIKLLLSATMTY 240
Query: 234 DPNKLAQLDLHHPLFLTT-----GETRYKLPERLESYKLICESKLKPLYLVALLQSL--- 285
+P K++ L+L+ PL+ ++ T+Y +P+ L+ Y + C + KPL L+ ++ S+
Sbjct: 241 NPEKISLLELNAPLYYSSTKKKESSTKYSMPDSLQEYYVACPASQKPLSLIHIVYSILLK 300
Query: 286 ---GEEKCIVFTSSVESTHRLCTLL---NHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
+ I FT++ E RL TL+ N IK YS RS L++ +
Sbjct: 301 KKSDNARIICFTNNKEIAQRLHTLIGLVNEINGYNIKPALYSSTVSTIERSHLLESLKNN 360
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
I +L+ SD ++RGMDV V+ V+NY+ P Y+HR GRTARAG+ G +T++ D V
Sbjct: 361 HINLLICSDILSRGMDVPNVDAVINYNLPLTAVLYVHRVGRTARAGKEGEAYTIV--DTV 418
Query: 400 KRFK 403
+ K
Sbjct: 419 DKSK 422
>gi|440801982|gb|ELR22922.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 689
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 218/377 (57%), Gaps = 41/377 (10%)
Query: 43 LPIV--QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 100
+P++ TL NR V LRALV+LP RDLALQVK VF + L V + VGQSS +
Sbjct: 278 IPVILRSTLLNRVVVRLRALVILPNRDLALQVKSVFDLLCEGTDLKVEIVVGQSSFRKDQ 337
Query: 101 SELIK--------------RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
+L++ + EAG P L+EL VDIL+ TPGRLMD +N TR
Sbjct: 338 EKLVQGEEGPDAADLRGASTSEAEAGDRSAP--ALKEL---VDILICTPGRLMDLLNQTR 392
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF------SDASTFL---PS 197
GFTL+HL +LV+DE DRLL +++Q WL VLQ T S + R +D L
Sbjct: 393 GFTLQHLRFLVIDEADRLLDQSFQDWLNKVLQATHSSTQGRVYGCVDETDQEAHLRIDAR 452
Query: 198 AFGSLKTIR-----RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
L ++R + ++P P L K++ SATLT +P K+A L L++P F +
Sbjct: 453 TMRQLTSVRSVHLSSTALHSIIPEEPEP-LHKLLFSATLTNNPKKIAALRLNNPHFFSAT 511
Query: 253 ETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
T YK+PE+L+ Y +IC KPL L+ LL+ ++ + FTSSVESTHRL LL G
Sbjct: 512 STGLYKMPEKLQEYMVICSLAYKPLVLLYLLEMFDFKRTLCFTSSVESTHRLYLLLTLMG 571
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+ + EYS Q R++ ++ F +G I+++++SDAM+RG+D+E V NV+NYD P +I
Sbjct: 572 Q--TGVAEYSSTLPQRKRTQIIEKFAKGDIKIVIASDAMSRGLDIEDVENVINYDVPPFI 629
Query: 372 KTYIHRAGRTAR--AGQ 386
KTY+HR A AGQ
Sbjct: 630 KTYVHRGPNCASRPAGQ 646
>gi|340368286|ref|XP_003382683.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Amphimedon
queenslandica]
Length = 640
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 164/444 (36%), Positives = 242/444 (54%), Gaps = 56/444 (12%)
Query: 1 MGISSLFPVQVAVWQETI----GP------GLFERDLCINSPTGSGKTLSYALPIVQTLS 50
M ++SLFPVQ V E + GP G D+CI +PTG GKTLSY +PIV +L
Sbjct: 180 MSVTSLFPVQCVVLPELLSSSHGPLLSTVSGAPPSDMCICAPTGCGKTLSYVVPIVSSLL 239
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--QSSIADEISELIKRPK 108
NR R L+ALVV+P++DLALQV +VF +++ + +G AVG +S + E +LI
Sbjct: 240 NRITRELKALVVVPSKDLALQVYNVFVSVSKGTRVRIG-AVGSQNTSFSVEQKQLISH-- 296
Query: 109 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 168
+ P AVD+LVATPGRL+ H+ T +L L YLV+DE DR+ ++
Sbjct: 297 ------HGP---------AVDVLVATPGRLVRHLQETPFLSLASLRYLVIDEADRIFEQS 341
Query: 169 YQAWLPTVLQLTRSDNENRFSD-ASTFLPSAFGSL-------KTIRRCGVE------RGF 214
Y WL TV+ R + + +S+ +P + L ++ G+
Sbjct: 342 YHNWLNTVMDSIRETHSSGHCPLSSSCIPRMYPELWKPSFSKSLLKHKGMHTDSQLSSSI 401
Query: 215 KDKPYPR---LVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKL-----PERLESY 265
D YP L K++ SATL+ DP +L L L+ P LF T + L P L+ Y
Sbjct: 402 NDLIYPAAAPLQKLLFSATLSLDPEQLHLLQLYRPKLFTATPALQEDLGQSILPSTLKEY 461
Query: 266 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 325
+ C S KPL L+ L+ + + + FT S ESTHRL LL E + E SG
Sbjct: 462 SISCSSDYKPLVLLHLILTFDHHRILCFTHSRESTHRLTLLLK---EYDAPVAEISGDLS 518
Query: 326 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 385
Q +++ +K +I+ LV SD M RGMD+ G++ V+NYD P++ ++Y+HR GRTARAG
Sbjct: 519 QEKKNELIKKLTGKEIKALVCSDGMARGMDIPGIDCVINYDVPSHFRSYLHRVGRTARAG 578
Query: 386 QLGRCFTLLHKDEVKRFKKLLQKA 409
G +TL +EV ++++++++A
Sbjct: 579 AEGAAYTLNTFEEVHKWQRMIREA 602
>gi|161611979|gb|AAI55869.1| LOC100135117 protein [Xenopus (Silurana) tropicalis]
Length = 644
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 171/438 (39%), Positives = 231/438 (52%), Gaps = 67/438 (15%)
Query: 3 ISSLFPVQV----AVWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR 52
+ LFPVQ A+ T +G G + D+C+++PTGSGKTL++ +PIVQ L R
Sbjct: 201 VKYLFPVQAEVIPAILDSTCHGFLLGKGGYRPSDVCVSAPTGSGKTLAFVIPIVQALLQR 260
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V +RALVVLPT++LA QV VF +GL V + GQ S E LI + G
Sbjct: 261 VVCEVRALVVLPTKELAQQVCKVFNTYVDGMGLKVVMVTGQKSFLKEQESLIHKTAF--G 318
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
C S DILV TPGRL+DHI T GF L HL +LV+DE DR++ Q W
Sbjct: 319 FC-----------SLADILVCTPGRLVDHIQQTEGFNLRHLRFLVIDEADRMIDSMNQDW 367
Query: 173 LP----TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 228
L V Q+ +D+ N F G L C P L K++ S
Sbjct: 368 LSHVTKAVFQVV-ADSPNML-----FTRKEPGILTAASSC--------LPQTPLQKLLFS 413
Query: 229 ATLTQDPNKLAQLDLHHPLFLTT---------GETR--------YKLPERLESYKLICES 271
ATLTQ+P KL QL L+ P T+ ET+ + LPE L Y + C
Sbjct: 414 ATLTQNPEKLKQLGLYQPRLFTSKQKGTSDDSSETQMESSTSGNFSLPEGLTHYYIPCNL 473
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 331
KPL L+ L SL + + FT+S +++HR FG I + E+S R K
Sbjct: 474 NSKPLILLHFLLSLRFSRVLCFTNSRDASHR-------FG--GISVAEFSSRLSPGERKK 524
Query: 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
TLK F +GK+Q+L+S+DA RG+D++GV V+NYD P +I+TY+HR GRTARAG+ G F
Sbjct: 525 TLKEFEQGKVQLLISTDATARGIDIKGVKCVINYDAPQFIRTYVHRVGRTARAGKAGLAF 584
Query: 392 TLLHKDEVKRFKKLLQKA 409
T+L K + + +L+ A
Sbjct: 585 TMLLKVQENPYFSMLRDA 602
>gi|195376467|ref|XP_002047018.1| GJ12159 [Drosophila virilis]
gi|194154176|gb|EDW69360.1| GJ12159 [Drosophila virilis]
Length = 680
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 236/441 (53%), Gaps = 65/441 (14%)
Query: 1 MGISSLFPVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ AV W + P F RD+C+++PTGSGKTL++A+PIVQ L+ R V+
Sbjct: 162 MKIKRLFPVQTAVIPWILEAQAKPEPFRPRDICVSAPTGSGKTLAFAIPIVQLLAKR-VQ 220
Query: 56 C-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
C +RALVVLP +LALQV VF A+ L V L Q + DE +L+++ K G+
Sbjct: 221 CKVRALVVLPVAELALQVYKVFNALCSKTELEVCLLSKQHRLEDEQEKLLEQYK---GVY 277
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
Y S VDI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 278 Y----------SKVDIVVTTPGRLVDHLHATKGFCLKSLQFLVIDEADRIMDAVFQNWLY 327
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE--RGFKDKPYPRLVKMVLSATLT 232
+ R+ + + L C E + +P+ K++ SATL+
Sbjct: 328 HLDTHVRTTTDQLLTGVQAPL------------CYQELLNSYGKQPH----KLLFSATLS 371
Query: 233 QDPNKLAQLDLHHPLFLTTGET--------------------------RYKLPERLESYK 266
QDP KL L L P TT T +Y P L
Sbjct: 372 QDPEKLQNLRLFQPKLFTTVLTMPALQLGLGNAEQPEQGVEQSSQFIGKYTTPAELTEQY 431
Query: 267 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQR 325
+ E +LKPL L A++ G ++ + FT+S ++ +RL +L FG +++E S
Sbjct: 432 CLTEMRLKPLTLYAMVLLNGWKRFLCFTNSADTANRLAFVLQQLFGGSPTRVEELSAKMS 491
Query: 326 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 385
++R++ L F G I L+ SDA+ RG+DV V+ VV+Y+ P +IKTYIHR GRTARAG
Sbjct: 492 AAMRAQRLTEFARGSIHGLICSDALARGIDVPNVDIVVSYEAPRHIKTYIHRVGRTARAG 551
Query: 386 QLGRCFTLLHKDEVKRFKKLL 406
G TLL + +FKK+L
Sbjct: 552 HKGTAITLLTDKDQAQFKKML 572
>gi|195495021|ref|XP_002095090.1| GE22191 [Drosophila yakuba]
gi|194181191|gb|EDW94802.1| GE22191 [Drosophila yakuba]
Length = 681
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 163/441 (36%), Positives = 231/441 (52%), Gaps = 57/441 (12%)
Query: 1 MGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W + P RD+C+++PTGSGKTL++A+PIVQ LS R
Sbjct: 155 MKIKRLFPVQKQVIPWILEAQAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVEC 214
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RAL+VLP +LALQV V +A+ L V L Q + DE +L+++ K G Y
Sbjct: 215 KVRALIVLPVAELALQVYRVVSALCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY 271
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S DI+V TPGRL++H++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 272 ----------SKADIVVTTPGRLVEHLHATKGFCLKSLTFLVIDEADRIMDAVFQNWLYH 321
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + + A T P + L++ F +P+ K++ SATL+QDP
Sbjct: 322 LDSHVKETTDQLL--AGTQAPLCYAELQS--------SFGKQPH----KLLFSATLSQDP 367
Query: 236 NKLAQLDLHHPLFLTTGET-------------------------RYKLPERLESYKLICE 270
KL L L P TT T RY P L + E
Sbjct: 368 EKLQNLRLFQPRLFTTVLTMPVLKDVTEGDADTEANTDPGQFVGRYTTPAELTEQYCVTE 427
Query: 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS 330
+LKPL + AL++ ++ + FT+S + RL +L+ + K+ E SG +R
Sbjct: 428 LRLKPLTVYALVEKYQWKRFLCFTNSSDQASRLTFVLSLLFQNGTKVAELSGNLSAKIRK 487
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
TL+ F GKI LV SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G
Sbjct: 488 TTLRNFSAGKINGLVCSDALARGIDVADVDVVLSYEIPRHITTYIHRVGRTARAGRKGTA 547
Query: 391 FTLLHKDEVKRFKKLLQKADN 411
TLL ++ FKK+L AD
Sbjct: 548 VTLLTDKDMTLFKKILSDADK 568
>gi|401883807|gb|EJT47994.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 743
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 168/429 (39%), Positives = 236/429 (55%), Gaps = 48/429 (11%)
Query: 1 MGISSLFPVQVAVWQETIGPGL----FER--DLCINSPTGSGKTLSYALPIVQTLSNRAV 54
+GIS F VQ A+ + + L FE+ D +++PTGSGKTL+Y +PIV+ LS R V
Sbjct: 308 LGISEFFAVQTALLPKLLRLPLTPLPFEKLSDYLVSAPTGSGKTLAYTVPIVEILSKRIV 367
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LRAL+VLPTRDL QVK+ ++ GL+ A Q+ + D
Sbjct: 368 TRLRALIVLPTRDLVTQVKETLEEVSKGSGLTHSFAHEQTLLVDGA-------------- 413
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
QS +DIL+ATPGRLMDH+ T+GFTL+HL +LV+DE DRLL ++Q WL
Sbjct: 414 ----------QSKLDILIATPGRLMDHLAMTKGFTLQHLRFLVIDEADRLLSSSFQNWLS 463
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG-FKDKPYPRLVKMVLSATLTQ 233
VL R ++ ++ S +L G+ RG F+ K++ SATLT+
Sbjct: 464 QVLDQCRP---HKHANGEELAGSQV-ALAWSEPMGLSRGDFEGSQVIPSSKLLFSATLTR 519
Query: 234 DPNKLAQLDLHHPLFLTTGETR--------YKLPERLESYKLICESKLKPLYLVALLQSL 285
DP K+AQL+L P + TR ++LP L +I +LKPL L+ LL S
Sbjct: 520 DPAKVAQLNLTSPEYYIVSSTRSITQIGQAFELPSSLTERSIILPPQLKPLNLLYLLHSE 579
Query: 286 GEEKCIVFTSSVESTHRLCTLLNHF-----GELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
G IVFT SV++ RL LL +F G ++ + ++ + S R L F GK
Sbjct: 580 GAAPSIVFTKSVDAASRLVRLLTYFEQAYIGGKKLSVASFTRDMKPSERKTMLSDFAAGK 639
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+ VLV SD ++RG+D+ V +VV+YD P + Y+HRAGRTARAG+ G +T++ K E K
Sbjct: 640 LDVLVCSDLISRGIDLPSVAHVVSYDVPLDMTKYVHRAGRTARAGRDGTVWTMVEKQEAK 699
Query: 401 RFKKLLQKA 409
FK +L A
Sbjct: 700 HFKDMLAAA 708
>gi|303273266|ref|XP_003055994.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462078|gb|EEH59370.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 526
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 161/445 (36%), Positives = 233/445 (52%), Gaps = 59/445 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRAL 60
G+ + VQ A W T G F+ D+C+ PTGSGKTL+YALP++Q L++R +R RAL
Sbjct: 36 GLDQVLTVQSATWLATGGGMCFDCDICVRGPTGSGKTLAYALPLLQALASRPGLREQRAL 95
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAV---GQSSIADEIS----ELIKRPKLEAGI 113
+V+PT DLA QV + + + A GL+VG+ + + D ++ + RP A +
Sbjct: 96 IVIPTLDLATQVSQLLSPLCDATGLTVGVPLRTHQDKCLVDRLTLENLATLNRPS-HAAL 154
Query: 114 CYDPED---VLQELQSAVD----------------ILVATPGRLMDHINATRGFTLEHLC 154
P D V ++ A D ++VATPGRL+ H+ L L
Sbjct: 155 ILQPVDHKIVRARIRQATDFSNAIPLDSASEERFDVMVATPGRLVAHVKEVYYQLLSGLE 214
Query: 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 214
+LV+DE DR+LR++YQ + + + S G+ R G
Sbjct: 215 FLVIDEADRVLRQSYQGCI-------------------SLIDSGVGA----RSPHTGNGD 251
Query: 215 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--------ETRYKLPERLESYK 266
+ RL K+++SATLT D + A L L+ P + + +++Y +P L+
Sbjct: 252 RSVSSRRLRKLLISATLTHDSVRFAHLHLNSPRVIQSSAYESDSLCDSQYVIPSDLDENF 311
Query: 267 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326
++ E+ KPL L ALL+ +G IVFTSSV THRL LL+ L EYS Q
Sbjct: 312 IVTEAIKKPLALCALLKRIGRVPVIVFTSSVAITHRLFLLLDSIKGLPSSAVEYSSSFSQ 371
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
VRS L +FR G Q+LV+SDA TRG+D++ V V++YD P + TYIHR GRTARAGQ
Sbjct: 372 GVRSAALDSFRSGSKQLLVASDAATRGLDIKHVAAVISYDVPLHQNTYIHRVGRTARAGQ 431
Query: 387 LGRCFTLLHKDEVKRFKKLLQKADN 411
G +T+ E +RF+ +L K D
Sbjct: 432 KGTAYTICRSSETQRFRNILTKVDG 456
>gi|198425548|ref|XP_002130172.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
[Ciona intestinalis]
Length = 636
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 169/465 (36%), Positives = 242/465 (52%), Gaps = 68/465 (14%)
Query: 1 MGISSLFPVQVAVW-------QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR 52
+GI+ LFPVQ V Q +I LF RDLC+++PTGSGKT+++ALPIVQ L R
Sbjct: 192 IGITQLFPVQQKVIPYILRDAQRSISHQLFPPRDLCVSAPTGSGKTIAFALPIVQALLQR 251
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS-VGLAVGQSSIADEISELIKRPKLEA 111
V RALVV PTR+L+ Q+ VF ++ L + + + S+ E L+ K
Sbjct: 252 VVPATRALVVSPTRELSAQIYKVFVSLCRNTQLKCILITAAKGSLLQEQRALLNFGK--- 308
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
L DI+VATPGRL DH++ T F+L+ L +LV+DE DR++ + +Q
Sbjct: 309 ----------TGLACPADIVVATPGRLADHLSQTSAFSLDKLRFLVIDEADRMMEQIHQR 358
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V Q + D+ LP +LK++ + + L K++ SATL
Sbjct: 359 WLTLVEQ-------KVYKDSFKPLPQHL-ALKSVTKNRIP----------LQKLLFSATL 400
Query: 232 TQDPNKLAQLDLHHP-LFLTTGET-----------------RYKLPERLESYKLICESKL 273
+ DP KL QL+L P LF + +Y P+ LE Y + C +
Sbjct: 401 SADPEKLQQLNLFQPRLFAAVVKPVQDNNMKCDVEENDFIGKYATPDGLEQYMIHCTAGE 460
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF----GELRIKIKEYSGLQRQSVR 329
KPL + L+ L + + + F S+E+T +L L+ + G+ E++ S R
Sbjct: 461 KPLITLNLV--LNKTRVLCFAGSIETTRKLSMLIQMYADKEGKKEFICTEFASHLPSSKR 518
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
K LK F GKI VLV SD+M RG+DV V +V+ YD P IKTYIHR GRTARAG G
Sbjct: 519 GKVLKDFISGKINVLVCSDSMARGLDVPCVEHVILYDVPPLIKTYIHRIGRTARAGATGT 578
Query: 390 CFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLRPVYK 432
+TLL K E+ FKK++ AD C + + IP + + +Y+
Sbjct: 579 AYTLLRKQEIFHFKKMI--ADAGKCKVKTMKIPKESTQKMVSIYE 621
>gi|406696286|gb|EKC99578.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 743
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 168/429 (39%), Positives = 234/429 (54%), Gaps = 48/429 (11%)
Query: 1 MGISSLFPVQVAVWQETIGPGL----FER--DLCINSPTGSGKTLSYALPIVQTLSNRAV 54
+GIS F VQ A+ + + L FE+ D +++PTGSGKTL+Y +PIV+ LS R V
Sbjct: 308 LGISEFFAVQTALLPKLLRLPLTPLPFEKLSDYLVSAPTGSGKTLAYTVPIVEILSKRIV 367
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LRAL+VLPTRDL QVK+ ++ GL+ A Q+ + D
Sbjct: 368 TRLRALIVLPTRDLVTQVKETLEEVSKGSGLTHSFAHEQTLLVDGA-------------- 413
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
QS +DIL+ATPGRLMDH+ T+GFTL+HL +LV+DE DRLL ++Q WL
Sbjct: 414 ----------QSKLDILIATPGRLMDHLAMTKGFTLQHLRFLVIDEADRLLSSSFQNWLS 463
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG-FKDKPYPRLVKMVLSATLTQ 233
VL R + L + +L G+ RG F+ K++ SATLT+
Sbjct: 464 QVLDQCRPHKPANGEE----LAGSQVALAWSEPMGLSRGDFEGSQVIPSSKLLFSATLTR 519
Query: 234 DPNKLAQLDLHHPLFLTTGETR--------YKLPERLESYKLICESKLKPLYLVALLQSL 285
DP K+AQL+L P + TR ++LP L +I +LKPL L+ LL S
Sbjct: 520 DPAKVAQLNLTSPEYYIVSSTRSITQIGQAFELPSSLTERSIILPPQLKPLNLLYLLHSE 579
Query: 286 GEEKCIVFTSSVESTHRLCTLLNHF-----GELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
G IVFT SV++ RL LL +F G ++ + ++ + S R L F GK
Sbjct: 580 GAAPSIVFTKSVDAASRLVRLLTYFEQAYIGGKKLSVASFTRDMKPSERKTMLSDFAVGK 639
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+ VLV SD ++RG+D+ V +VV+YD P + Y+HRAGRTARAG+ G +T++ K E K
Sbjct: 640 LDVLVCSDLISRGIDLPSVAHVVSYDVPLDMTKYVHRAGRTARAGRDGTVWTMVEKQEAK 699
Query: 401 RFKKLLQKA 409
FK +L A
Sbjct: 700 HFKDMLAAA 708
>gi|328768512|gb|EGF78558.1| hypothetical protein BATDEDRAFT_35707 [Batrachochytrium
dendrobatidis JAM81]
Length = 761
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 162/458 (35%), Positives = 234/458 (51%), Gaps = 81/458 (17%)
Query: 1 MGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
MGI FPVQ A+ W +++ PG DLC+ + TGSGKTL+YA+PIV+TL
Sbjct: 162 MGIEHWFPVQEAILPQLLKTRWWTQSVSPG----DLCVAASTGSGKTLAYAVPIVETLLT 217
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-----R 106
R + +RALV++PTRDLALQV+ F ++ L V GQ+S + E + L+
Sbjct: 218 RVIPRIRALVIVPTRDLALQVRRTFESLVIGTKLRVAAVTGQASFSAEKALLVSAEIPCS 277
Query: 107 PKLEAGICYDP---EDVLQEL--QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 161
L++ + P ED + E S +DIL+ATPGRLMDH+N T GF+L HL +LV+DE
Sbjct: 278 SSLDSLLLQHPLANEDAITESGGSSRIDILIATPGRLMDHLNGTPGFSLSHLRFLVIDEA 337
Query: 162 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 221
DRLL +++ WL +VL+ ++ +++ D P
Sbjct: 338 DRLLNQSFHGWLGSVLK----------------------AVDPVQKEAAASNHLDIPSTA 375
Query: 222 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---------------------------ET 254
L K++ SATLT++P+K+A L L +P ++T E
Sbjct: 376 LQKLLFSATLTRNPSKIASLRLRNPRYITVSGSPDGLLDQDVNNVDMNDQPANITSSVEQ 435
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR-----LCTLLNH 309
R+ P L ++ KPL L+ +L +VF SVES HR +L H
Sbjct: 436 RFITPPSLVERMVVLSESDKPLALLYFFDTLKHSGVLVFVKSVESAHRLSLLLNLSLKLH 495
Query: 310 FGELRIK---IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV-EGVNNVVNY 365
G+ + +S S R K + F+ G+I L+ SD M RGMD+ E V V+NY
Sbjct: 496 HGKASNDQPLTEAFSSDLSVSKRQKLISMFKAGQILGLICSDIMARGMDLGESVKVVINY 555
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
P+ IK+Y+HR GRTARAG+ G +T L +V+ FK
Sbjct: 556 SVPSRIKSYVHRIGRTARAGRDGIAYTFLESRQVRWFK 593
>gi|357628805|gb|EHJ77980.1| putative ATP-dependent RNA helicase DDX51 [Danaus plexippus]
Length = 625
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 231/448 (51%), Gaps = 44/448 (9%)
Query: 2 GISSLFPVQVAVW----QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 56
G++ FPVQ V Q+ P L D+C+++PTGSGKTLS+ LPI+Q L N
Sbjct: 160 GVTHFFPVQEQVIPFIIQQHQHPELLRPHDICVSAPTGSGKTLSFVLPIIQVLMNEIGHH 219
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
+RALVVLP ++LA+QV VF GL V L G + + E ++++ + IC
Sbjct: 220 IRALVVLPVQELAIQVAQVFKKYCTNTGLRVQLLSGSTPLQKEQQQIMRFTETLKWIC-- 277
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
+DI+V T GRL++H+ T GF+L++L +LV+DE DR++ WL +
Sbjct: 278 ----------EIDIIVCTAGRLVEHLQNTEGFSLKNLKFLVIDEADRIMDNIQNDWLYHM 327
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
+ + +N S +P +R V K++ SATL+ DP
Sbjct: 328 EKHIKMENH-----TSNKVPHLNWVGLNSQRSSVH------------KLLFSATLSPDPE 370
Query: 237 KLAQLDLHHPLFL----------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 286
L + L P + +Y P+ L+ ++C ++ KPL L
Sbjct: 371 LLEEWGLFQPKLFSAIPIQDHPDSNVSKKYTTPDELQEQYVVCSAEEKPLIFYYFFAELK 430
Query: 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 346
+K + FT+S +S HRL LLN + + +K+ E S ++ R L+ F++ +I V++
Sbjct: 431 WDKTLCFTNSSQSAHRLTVLLNIWSKGNLKVAELSAALDRTSRELVLRKFKQSEINVIIC 490
Query: 347 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406
+DA+ RG+D+ N V++YD P IKTY+HR GRT RAG++G T++ ++V+ FK +L
Sbjct: 491 TDALARGIDIPDCNYVISYDPPRNIKTYVHRVGRTGRAGRIGNAVTIIVHNQVQMFKDIL 550
Query: 407 QKADNDSCPIHSIPSSLIESLRPVYKSG 434
Q P + + +++ L P Y++
Sbjct: 551 QSGGKSDIPQLEMQNDILQDLMPGYQNA 578
>gi|255071295|ref|XP_002507729.1| predicted protein [Micromonas sp. RCC299]
gi|226523004|gb|ACO68987.1| predicted protein [Micromonas sp. RCC299]
Length = 523
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 168/433 (38%), Positives = 230/433 (53%), Gaps = 51/433 (11%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPT 65
F +Q W+ T G F+RDLC+++PTGSGKTL+YA+PIVQ L + + LR+LV++PT
Sbjct: 42 FKIQADTWRHTGGGLSFDRDLCVSAPTGSGKTLAYAIPIVQALCRQTKLSHLRSLVIVPT 101
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVG-------QSSIADEISELIKRPKLEAGICYD-- 116
DLA QV +VF + AVGL V +A G + E + P ++
Sbjct: 102 GDLAAQVGNVFKPLCQAVGLKVSIAQGSGIKSLYHNDAFGEQNAFRHHPAVKQKFITSLT 161
Query: 117 PEDVLQELQSA-------VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 169
+ + +L S VDILV PGRL+ I L+ + +LV+DE DR+LR+ Y
Sbjct: 162 VQTTVTDLTSNTEADIRDVDILVTPPGRLVTLIRRFARLFLDRVEFLVIDEADRVLRQTY 221
Query: 170 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
Q WLP V NR TF ++ G RR RL K++ SA
Sbjct: 222 QGWLPLV---------NRTVVTGTF-HTSLGDRGASRR-------------RLKKLLFSA 258
Query: 230 TLTQDPNKLAQLDLHHPLFLTT------GETRYKLPERLESYKLICESKLKPLYLVALLQ 283
TLTQDP +LA L L P ++T E RY LP L+ Y +I K L L ALL+
Sbjct: 259 TLTQDPGRLAGLHLKAPHRISTVVSQAMRENRYFLPPGLKEYVIISRGDEKLLVLCALLK 318
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+G IVFT+SV++T RL LL+ L K EYS R+++LK FR G+ +
Sbjct: 319 RIGPTPAIVFTASVDATRRLFRLLHLMIGLPSKPVEYSSYAPLLHRTESLKLFRSGRCSL 378
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
LV+SDA TRG+D E V ++YD P + KTY+HR GR ARA + G +T+ EV +F
Sbjct: 379 LVASDAATRGLDFEHVGVTISYDVPTHPKTYVHRVGRAARAQRRGLAYTICRPTEVDKFH 438
Query: 404 KLL-----QKADN 411
+L +K DN
Sbjct: 439 LMLTNIGVRKEDN 451
>gi|405968018|gb|EKC33126.1| ATP-dependent RNA helicase DDX51 [Crassostrea gigas]
Length = 1179
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 169/476 (35%), Positives = 229/476 (48%), Gaps = 97/476 (20%)
Query: 3 ISSLFPVQVAVWQETIG----------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
I FPVQ+ V E + G D+C+++PTGSGKTL++ LPIVQ L +R
Sbjct: 253 IDYFFPVQMQVIPEILDTVRYGFVLGRAGFRPPDICVSAPTGSGKTLAFVLPIVQALKSR 312
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
+ +RA+VVLP RDLA+QV VF L VG+ VGQ + E L+++
Sbjct: 313 VLCRIRAMVVLPVRDLAVQVFKVFLQYTKGTNLKVGMIVGQKQFSVEQHALVRQR----- 367
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+ L+S VDI+VATPGRL+DHIN T GF+L L +LV+DE DR++ Q W
Sbjct: 368 --------VGGLESKVDIVVATPGRLVDHINKTPGFSLTDLRFLVIDEADRIMEHVKQDW 419
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
L V EN PS SL C K + L K++ SATL+
Sbjct: 420 LSHV--------ENAVFSGGRTAPS---SLNVYNSC--------KHHMPLQKLLFSATLS 460
Query: 233 QDPNKLAQLDLHHPLFLTT-------------------------------GET------R 255
Q+P KL QL+L P T+ GE +
Sbjct: 461 QNPEKLQQLNLFQPKLFTSVVDGGSLPRPLESEGEGNKDDQVTDRLSGPGGEVKGQFVGK 520
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 315
Y P L+ Y + E+ KPL ++ L +L +L L+ FG I
Sbjct: 521 YTTPLGLKEYTVEVEAFEKPLVILHFLHNL----------------QLYHLIRLFG--GI 562
Query: 316 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 375
+ E + + S RSK LK F+ G I +L+ SDAM RGMD++ V V++YD P YIKTYI
Sbjct: 563 NVAEITAKLQASRRSKVLKKFQNGSIDILICSDAMARGMDIDDVQYVISYDPPPYIKTYI 622
Query: 376 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 431
HR GRTARAG+ G +LL K E FK + ++A + S +E L Y
Sbjct: 623 HRVGRTARAGKEGTALSLLQKKEFHHFKTMTKEAGKTYIEKFKVHSKEMEGLLEKY 678
>gi|194872386|ref|XP_001973017.1| GG15853 [Drosophila erecta]
gi|190654800|gb|EDV52043.1| GG15853 [Drosophila erecta]
Length = 687
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 231/443 (52%), Gaps = 58/443 (13%)
Query: 1 MGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R
Sbjct: 155 MKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVEC 214
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RAL+VLP +LALQV V + + L V L Q + DE +++++ K G Y
Sbjct: 215 KVRALIVLPVAELALQVYRVISKLCSKTELEVCLLSKQHKLEDEQEKVVEQYK---GKYY 271
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S DI+V TPGRL++H++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 272 ----------SKADIVVTTPGRLVEHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYH 321
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + + A T P + L++ F +P+ K++ SATL+QDP
Sbjct: 322 LDSHVKETTDQLL--AGTQAPLCYAELQS--------SFGKQPH----KLLFSATLSQDP 367
Query: 236 NKLAQLDLHHPLFLTT------------GET-------------RYKLPERLESYKLICE 270
KL L L P TT GE RY P L + E
Sbjct: 368 EKLQNLRLFQPRLFTTVLTMPVLKDITEGEADTEAHTDPGQFVGRYTTPAELTEQYCVTE 427
Query: 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVR 329
+LKPL + AL++ ++ + FT+S + RL +L F + + E SG VR
Sbjct: 428 LRLKPLTVFALVEKYKWKRFLCFTNSSDQASRLTFVLKVLFKKYSTIVSELSGNLSARVR 487
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
+ LK F GKI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G
Sbjct: 488 KEKLKDFSAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGT 547
Query: 390 CFTLLHKDEVKRFKKLLQKADND 412
TLL + ++ FKK+L AD +
Sbjct: 548 AVTLLTEQDMALFKKILSDADKE 570
>gi|328863604|gb|EGG12703.1| hypothetical protein MELLADRAFT_101203 [Melampsora larici-populina
98AG31]
Length = 892
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 251/494 (50%), Gaps = 95/494 (19%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER---------------DLCINSPTGSGKTLSYALPI 45
+GI L PVQ++V+ IG ++ D+CIN+PTGSGKTLSY +PI
Sbjct: 374 IGIEYLLPVQISVFSALIGKLRNKKITPSSILYPINHPPSDICINAPTGSGKTLSYIVPI 433
Query: 46 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 105
V+TLS+R V LRAL+VLPTRDL LQVK F +I+ GL + + GQ S + E +
Sbjct: 434 VETLSSRTVVRLRALIVLPTRDLVLQVKQTFESISKGTGLKLAIVTGQHSFSQEQA---- 489
Query: 106 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
L +G P + E + VD+++ATPGRL+DH+N T GF+L HLC+L++DE D+LL
Sbjct: 490 ---LLSGNA--PFNTSSECK--VDVVIATPGRLIDHLNQTPGFSLSHLCFLILDEADQLL 542
Query: 166 REAYQAWLPTVL-----QLTRSDNENR----FSDASTFLPSAFGSLKTIRR--------- 207
+ Q+WL +L +L+++ + ++ + D + + L + R
Sbjct: 543 SKD-QSWLYQILKYELKKLSKTHSNSKQIINYDDEDSEMMIQQEELNSARNEPLPLLKKF 601
Query: 208 -----CG-----------VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
C +E K +P+ R+ ++ SATL +DP KL L L +PLF+
Sbjct: 602 MDSVECNEISSDWRPLLKLEDPCKTRPF-RI--LLFSATLKRDPTKLTHLGLRNPLFIKV 658
Query: 252 GE---------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
+ Y LP L+ + ++ +LKPL L L++ + ++F SVE R
Sbjct: 659 QNPSVEVIDNFSGYSLPPNLQQHLIVTTPQLKPLTLFHLIKVREVKNALIFCKSVEGATR 718
Query: 303 LCTLLN------------HFGELRIKIKEYSGLQRQSV----------RSKTLKAFREGK 340
L L E IK E S + + R + L F+ G
Sbjct: 719 LVNLYQLMRKGWMEKSTTEANENEIKDGENSNVLGTAALFSSDLKPIDRKRILNEFQNGS 778
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
I +LV SD + RG+D+ + NV+NYD P IK YIHR GRTARAG+ G+ ++L+ E +
Sbjct: 779 INLLVCSDVIARGLDLPTIENVINYDTPVNIKKYIHRIGRTARAGKFGQAWSLVEFQEAR 838
Query: 401 RFKKLLQKADNDSC 414
K+ ++ + C
Sbjct: 839 YLKESIKDSLGMEC 852
>gi|198463449|ref|XP_001352828.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
gi|198151259|gb|EAL30329.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
Length = 697
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 169/439 (38%), Positives = 232/439 (52%), Gaps = 62/439 (14%)
Query: 1 MGISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 54
M I LFPVQ V W Q P L RD+C+++PTGSGKTL++A+PIVQ L+NR V
Sbjct: 160 MKIKRLFPVQRTVIPWILEAQGQPAP-LRPRDICVSAPTGSGKTLAFAIPIVQLLNNR-V 217
Query: 55 RC-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
RC +RALVVLP +LALQV V A+ L V L Q + DE +L+ ++ G
Sbjct: 218 RCKVRALVVLPVAELALQVFKVIRALCSKTELEVCLLSKQHRLEDEQEKLV---EVYKGQ 274
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
Y S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 275 IY----------SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAFFQNWL 324
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+ R A T P L + P+ K++ SAT++Q
Sbjct: 325 YHLDNHVRETANQLL--AGTQPPLCLKELYAT--------YGKVPH----KLLFSATMSQ 370
Query: 234 DPNKLAQLDLHHPLFLTT----------------GET---------RYKLPERLESYKLI 268
DP KL L L P TT ET +Y P L +
Sbjct: 371 DPEKLQNLRLFQPKLFTTVFALPVPKSDEQADGDEETTPNTGHFAGKYTTPVELTEQFCV 430
Query: 269 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQS 327
E ++KPL L AL++ ++ + FT+S E+ +RL ++ F K+ E SG
Sbjct: 431 TELRIKPLTLFALVEKYQWKRFLCFTNSTETANRLAFVMGKLFSTGPTKVAELSGKLSAL 490
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
VR+KTL F G+I L+ SDA+ RG+DV V+ V++Y+ P +IKTYIHR GRTARAG+
Sbjct: 491 VRTKTLSDFARGRINGLICSDALARGIDVADVDVVLSYETPRHIKTYIHRVGRTARAGRK 550
Query: 388 GRCFTLLHKDEVKRFKKLL 406
G TLL + E +FKK+L
Sbjct: 551 GTAVTLLTEQEQAQFKKML 569
>gi|17136666|ref|NP_476833.1| dead box protein 73D [Drosophila melanogaster]
gi|12644178|sp|P26802.3|DDX51_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp73D;
Short=DEAD box protein 73D
gi|4972732|gb|AAD34761.1| unknown [Drosophila melanogaster]
gi|7294064|gb|AAF49419.1| dead box protein 73D [Drosophila melanogaster]
gi|33589494|gb|AAQ22514.1| LD27814p [Drosophila melanogaster]
Length = 687
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 229/442 (51%), Gaps = 58/442 (13%)
Query: 1 MGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R
Sbjct: 155 MKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDC 214
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALVVLP +LALQV V + + L V L Q + DE +L+++ K G Y
Sbjct: 215 KVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY 271
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 272 ----------SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYH 321
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + + A T P + L+ F +P+ K++ SATL+QDP
Sbjct: 322 LDSHVKETTDQLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDP 367
Query: 236 NKLAQLDLHHPLFLTTGET-------------------------RYKLPERLESYKLICE 270
KL L L P T T RY P L + E
Sbjct: 368 EKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTE 427
Query: 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVR 329
+LKPL + AL++ ++ + FT+S + RL +L F + K+ E SG VR
Sbjct: 428 LRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVR 487
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
++ L+ F GKI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G
Sbjct: 488 NERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGT 547
Query: 390 CFTLLHKDEVKRFKKLLQKADN 411
T+L + ++ FKK+L A+
Sbjct: 548 AVTVLTEQDMTLFKKILSDANK 569
>gi|499204|gb|AAC14192.1| D-E-A-D box protein [Drosophila melanogaster]
Length = 644
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 161/441 (36%), Positives = 229/441 (51%), Gaps = 58/441 (13%)
Query: 1 MGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R
Sbjct: 155 MKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDC 214
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALVVLP +LALQV V + + L V L Q + DE +L+++ K G Y
Sbjct: 215 KVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY 271
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 272 ----------SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYH 321
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + + A T P + L+ F +P+ K++ SATL+QDP
Sbjct: 322 LDSHVKETTDQLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDP 367
Query: 236 NKLAQLDLHHPLFLTTGET-------------------------RYKLPERLESYKLICE 270
KL L L P T T RY P L + E
Sbjct: 368 EKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTE 427
Query: 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVR 329
+LKPL + AL++ ++ + FT+S + RL +L F + K+ E SG VR
Sbjct: 428 LRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVR 487
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
++ L+ F GKI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G
Sbjct: 488 NERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGT 547
Query: 390 CFTLLHKDEVKRFKKLLQKAD 410
T+L + ++ FKK+L A+
Sbjct: 548 AVTVLTEQDMTLFKKILSDAN 568
>gi|195590910|ref|XP_002085187.1| GD12444 [Drosophila simulans]
gi|194197196|gb|EDX10772.1| GD12444 [Drosophila simulans]
Length = 687
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 228/442 (51%), Gaps = 58/442 (13%)
Query: 1 MGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R
Sbjct: 155 MKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDC 214
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALVVLP +LALQV V +A+ L L Q + DE +L+++ K G Y
Sbjct: 215 KVRALVVLPVAELALQVYRVISALCSKTDLEACLLSKQHKLEDEQEKLVEQYK---GKYY 271
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S DI+V TPGRL++H++AT+GF L+ L +L++DE DR++ +Q WL
Sbjct: 272 ----------SKADIVVTTPGRLVEHLHATKGFCLKSLKFLIIDEADRIMDAVFQNWLYH 321
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + + A T P + L+ F +P+ K++ SATL+QDP
Sbjct: 322 LDSHVKETTDQLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDP 367
Query: 236 NKLAQLDLHHPLFLTTGET-------------------------RYKLPERLESYKLICE 270
KL L L P T T RY P L + E
Sbjct: 368 EKLQDLRLFQPRLFATVLTMPVLKDATEEGSDTEALTDPGQFVGRYTTPAELTEQYCVTE 427
Query: 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVR 329
+LKPL + AL++ ++ + FT+S + RL +L F + K+ E SG VR
Sbjct: 428 LRLKPLTVFALVEKYKWKRFLCFTNSSDQASRLTFVLEVLFQKYNTKVSELSGNLSAKVR 487
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
+ L+ F GKI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G
Sbjct: 488 KERLRDFAAGKINGLICSDALARGIDVADVDVVLSYEIPRHITTYIHRVGRTARAGRKGT 547
Query: 390 CFTLLHKDEVKRFKKLLQKADN 411
TLL + ++ FKK+L A+
Sbjct: 548 AVTLLTEYDMTLFKKILSDANK 569
>gi|195328224|ref|XP_002030816.1| GM24369 [Drosophila sechellia]
gi|194119759|gb|EDW41802.1| GM24369 [Drosophila sechellia]
Length = 687
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 227/442 (51%), Gaps = 58/442 (13%)
Query: 1 MGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R
Sbjct: 155 MKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDC 214
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALVVLP +LALQV V +A+ L L Q + DE +L+++ K G Y
Sbjct: 215 KVRALVVLPVAELALQVYRVISALCSKTDLEACLLSKQHKLEDEQEKLVEQYK---GKYY 271
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S DI+V TPGRL+DH++AT+GF L+ L +L++DE DR++ +Q WL
Sbjct: 272 ----------SKADIVVTTPGRLVDHLHATKGFCLKSLKFLIIDEADRIMDAVFQNWLYH 321
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + + A T P + L+ F +P+ K++ SATL+QDP
Sbjct: 322 LDSHVKETTDQLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDP 367
Query: 236 NKLAQLDLHHPLFLTTGET-------------------------RYKLPERLESYKLICE 270
KL L L P T T RY P L + E
Sbjct: 368 EKLQDLRLFQPRLFATVLTMPVLKDATEEGSDTEALTDPGQFVGRYTTPAELTEQYCVTE 427
Query: 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVR 329
+LKPL + AL++ ++ + FT+S + RL +L F + + E SG VR
Sbjct: 428 LRLKPLTVFALVEKYKWKRFLCFTNSSDQASRLTFVLKVLFQKYSTNVSELSGNLSAKVR 487
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
+ L+ F GKI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G
Sbjct: 488 KERLRDFAAGKINGLICSDALARGIDVADVDVVLSYEIPRHITTYIHRVGRTARAGRKGT 547
Query: 390 CFTLLHKDEVKRFKKLLQKADN 411
TLL + ++ FKK+L A+
Sbjct: 548 AVTLLTEYDMTLFKKILSDANK 569
>gi|320169870|gb|EFW46769.1| DEAD-box ATP-dependent RNA helicase 1 [Capsaspora owczarzaki ATCC
30864]
Length = 866
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 187/542 (34%), Positives = 256/542 (47%), Gaps = 128/542 (23%)
Query: 1 MGISSLFPVQVAVWQETIGPG---LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
MGI SLFPVQ ++ E +G + DLC++SPTGSGKT+++A+PIV LS R V L
Sbjct: 277 MGIQSLFPVQASLLPEILGSASSAVHPGDLCVSSPTGSGKTMAFAIPIVNKLSTRVVPRL 336
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
RAL++ PTR+LA QVK VF ++A L+ L GQ S+A E +L+ + D
Sbjct: 337 RALILQPTRELAAQVKSVFDSLAQFTPLTTALITGQLSLAAE-QDLLAAGAPSRSVLADS 395
Query: 118 EDVLQELQSA-----------VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 166
L +S+ D++VATPGRL+DH+N L+HL YLV+DE DRLL
Sbjct: 396 VLALAGNRSSGSAQQATPIVLCDVVVATPGRLVDHLNCNPAL-LDHLEYLVLDEADRLLS 454
Query: 167 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSA--FGSLKTIRRCGVERGFKDKPYPRLVK 224
++Y WLP VL R+ R + S+ SA G + G + + K
Sbjct: 455 QSYSDWLPRVL-AGRTTRHQRAAAQSSNNASATLAGESGGVGSAGYGMVNNSSSHSIMRK 513
Query: 225 MVLSATLTQDPNKLAQL------------------------------------DLHHPLF 248
++ SATLT +P K+A L D PLF
Sbjct: 514 LLFSATLTNNPEKIAALHLVFPRYFVAAPNATLSVKPVAGAGADAATAMDTTADGQEPLF 573
Query: 249 LTTGET--RYKLPERLESYKLICESKLKPLYLV-----ALLQSLG------EEKC----- 290
G+ R+ LP L ++C+ KPL L L+++ G +E
Sbjct: 574 DADGDNAARFTLPATLTQEMIVCQLADKPLALAQRLYGTLIRAAGKTLPADDEAAATTTP 633
Query: 291 --IVF-------------------------------------TSSVESTHRLCTLL---- 307
+VF T+SVESTHRL LL
Sbjct: 634 HRVVFASDDEEDADPSNEEASAKKRGTPLSRAIKALPQALVFTASVESTHRLALLLRNLL 693
Query: 308 -NHFGELR-IK----IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
ELR I+ + E+S + R K L FR ++ VL+ SDAM RGMD+E V
Sbjct: 694 KQALPELRDIQLGSLVAEFSSSLSKDDRGKMLNRFRTNQVHVLICSDAMARGMDIENVAE 753
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
V+NYD P Y KTY+HR GRTARAG+ G+ TLL +EV FK++L KA HS+P+
Sbjct: 754 VINYDVPVYFKTYVHRVGRTARAGRSGQALTLLRSEEVAAFKRMLGKAG------HSLPA 807
Query: 422 SL 423
+
Sbjct: 808 KI 809
>gi|345492759|ref|XP_001599929.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Nasonia
vitripennis]
Length = 631
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 229/459 (49%), Gaps = 73/459 (15%)
Query: 2 GISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
G LFPVQ V W + G + RD C++ PTGSGKTL+YALPI+Q L + VR
Sbjct: 185 GFDKLFPVQARVLAWLVKCDQDYKTGKWVRDTCVSMPTGSGKTLAYALPIIQLLQHNFVR 244
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+R L+VLP ++LA QV DV + + + L G SS +E +L+++ + + I
Sbjct: 245 LVRCLIVLPVQELATQVYDVISKYSTGTSPRIALISGASSFKEEQEKLVQKTEKDDYI-- 302
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S VDI++ATPGRL+DHI T GF+L L +LV+DE DR WL
Sbjct: 303 ----------SRVDIVIATPGRLIDHIRKTEGFSLSALRFLVIDEADRATE-----WL-- 345
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
++P + V + K++LSATL+QDP
Sbjct: 346 -----------------QYIPFPHSKAPPLSVANVRSSWNTPAQ----KLLLSATLSQDP 384
Query: 236 NKLAQLDLHHPLFLTTG-------------------ETRYKLPERLESYKLICESKLKPL 276
KL++L L P+ T+ +RY P L + C + KPL
Sbjct: 385 EKLSRLGLFRPILFTSAVVDLEKTDKDINLDEDLNVASRYGNPSELTERIVECSIQHKPL 444
Query: 277 YLV-ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR-IKIKEYSGLQRQSVRSKTLK 334
L L++ EK +VFT+S E+ HRL LL + + + + E S R +TL+
Sbjct: 445 ALYRQLMKDEVIEKTLVFTNSAEAAHRLAILLQSLLKSKDVTVGELSAQLGSKQREETLE 504
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +G ++VLVSSDA+ RG+D+ + VV+YD P ++K YIHRAGRT R G G +LL
Sbjct: 505 KFIQGTLRVLVSSDALARGLDIPEIKLVVSYDLPKHVKGYIHRAGRTGRGGHPGTAISLL 564
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 433
+++ F ++L K S+P+ ESL V +S
Sbjct: 565 LPNQIALFSRMLNKVGK------SVPTPEKESLDEVAES 597
>gi|321459585|gb|EFX70637.1| hypothetical protein DAPPUDRAFT_112535 [Daphnia pulex]
Length = 721
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 161/430 (37%), Positives = 227/430 (52%), Gaps = 59/430 (13%)
Query: 3 ISSLFPVQVAV--WQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
I FPVQ V W LF D+C+++PTGSGKTL++ LP +Q L ++VR LR
Sbjct: 249 IGFFFPVQQQVIPWLLESQQQLFRPCDMCVSAPTGSGKTLAFVLPTIQALWRQSVRRLRC 308
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L VLP DLA+QV V+ + L V L GQ+S DE L+++ K AG
Sbjct: 309 LAVLPVHDLAVQVYRVYLSFCAGTNLQVALISGQASFYDEQQLLVRKGK--AG------- 359
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+ + DI+V TPGRL+DH+ T GF+L+ L YL++DE DR++ E + WL V +
Sbjct: 360 ---QYLTKPDIVVCTPGRLVDHLQRTPGFSLKSLRYLIIDEADRIMEEEHNDWLFHVEKA 416
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV-KMVLSATLTQDPNKL 238
+EN + + +P+ + V K++ SATL+QDP KL
Sbjct: 417 IGLSSENLVAQKLS-----------------------RPWEKYVQKLLFSATLSQDPEKL 453
Query: 239 AQLDLHHPLFLTT------GET------------RYKLPERLESYKLICESKLKPLYLVA 280
+L L P T+ E+ ++ P L + C LKPL +
Sbjct: 454 TRLGLFQPKLFTSVVSTESAESADNTIQSHHFVGKFTTPAELTEHFFKCPPMLKPLAVYC 513
Query: 281 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
LL+ + FT+S +THRLC LL FG+L K+ E S ++ R K LK F GK
Sbjct: 514 LLKKFKYHSALCFTNSRSATHRLCELLKQFGDL--KVAECSSEISKAPRDKLLKDFSTGK 571
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
I +LV +DA++RGMD+ V+ V++YD P Y+K YIHRAGR ARAG+ G T+L E+
Sbjct: 572 IDLLVCTDAVSRGMDLGVVDCVISYDSPKYVKNYIHRAGRAARAGRPGTAITILMDSEMH 631
Query: 401 RFKKLLQKAD 410
F KLL A+
Sbjct: 632 GFNKLLAMAE 641
>gi|47214668|emb|CAG00904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 447
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 153/454 (33%), Positives = 221/454 (48%), Gaps = 86/454 (18%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI FPVQ V IG G + RD+C+++PTGSGKTL++ +P+VQ L
Sbjct: 45 GIDHFFPVQAEVIPAILEAAQQGLLIGRGGYRPRDICVSAPTGSGKTLAFVIPVVQVLMQ 104
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RAL VLPT++LA QV VF+A A L V + GQ S++ E + L + A
Sbjct: 105 RVVCHVRALAVLPTKELAQQVYKVFSAYAEGTSLRVLVLAGQRSLSAEQASL---SEYRA 161
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G+ +S DI+VATPGRL+DHIN G L+ L +L++DE DR++ +QA
Sbjct: 162 GV----------RRSQADIIVATPGRLVDHINKKSGLKLDQLRFLIIDEADRMIDSMHQA 211
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V++ T R +AS+ + + C P L K++ SATL
Sbjct: 212 WLSQVVKATYGTGGGR--EASSIFSRSEAA------CATAASLSPPQMP-LQKLLFSATL 262
Query: 232 TQDPNKLAQLDLHHP-LFLTTGET------------RYKLPERLESYKLICESKLKPLYL 278
TQ+P KL QLDLH P LF +T R+ P+ L + + C KPL +
Sbjct: 263 TQNPEKLQQLDLHQPRLFSSTHRQADATVPAAQKAERFDFPQGLSEFYVPCTLSRKPLLI 322
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ + + + FT+S ++ HR
Sbjct: 323 LHFILRMKLSPILCFTNSRQAAHR------------------------------------ 346
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
L+S+DA RG+D+ GV VVNYD P Y++TY+HR GRTARAG+ G FT L +
Sbjct: 347 -----LISTDAAARGIDISGVKCVVNYDAPQYVRTYVHRVGRTARAGKSGLAFTFLLGVQ 401
Query: 399 VKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K F K++ A + + S ++ + Y+
Sbjct: 402 EKNFLKMVMDAGSPGIQKQIVKSESLKGMEGRYE 435
>gi|397634960|gb|EJK71658.1| hypothetical protein THAOC_06880 [Thalassiosira oceanica]
Length = 790
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 181/540 (33%), Positives = 254/540 (47%), Gaps = 134/540 (24%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSN-------RAVRCLRALVVLPTRDLALQVKDVFA 77
RD+C +SPTGSGKTL++ LPI+ L + R +R LRALVVLP+RDLA QV VF
Sbjct: 221 RDVCCHSPTGSGKTLAFVLPILTALHDGTSCGGARGLRRLRALVVLPSRDLARQVHGVFM 280
Query: 78 AIAPAVGLSVGLAVG----QSSIADEISELIKRPKLEAGICY------------------ 115
+ + +GLAVG ++ + +E L+ + E+ Y
Sbjct: 281 RYSKGSRIKIGLAVGGGRKRTDLTNERRSLVVESQHESTGHYKEDDGTVIRRRSGGPLEE 340
Query: 116 ---------DPEDVLQELQ---------------------SAVDILVATPGRLMDHINAT 145
DP + + L SAVDILV TPGRL+DH+++T
Sbjct: 341 ANARVRHSFDPTSISEALSAFDGRGSKDSCFEATPKICGISAVDILVCTPGRLVDHLDST 400
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN-------ENRFS--------- 189
GFTL+HL ++V+DE DRL+ + YQ W+ VLQ + S+N + F
Sbjct: 401 PGFTLQHLRFIVIDEADRLVNQPYQNWIRRVLQASNSENCFEPLNLDMSFREYIRQPLRT 460
Query: 190 --DASTF--------------LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
D TF S G T G+ G +P P L K++ SATLTQ
Sbjct: 461 APDGQTFNIDPVTHRIAGSGAAHSLLGDSNTTE-SGLIGGTIGRPVP-LRKLLFSATLTQ 518
Query: 234 DPNKLAQLDLHHPL-----FLTTGET----------RYKLPERLESYKLICESKLKPL-- 276
DP KLA+L L +P +L ++ +Y LP L + C ++ KPL
Sbjct: 519 DPQKLARLGLDNPKHYDANYLKKHQSGSATEEAKAGKYFLPVGLRESMVECTAEQKPLVL 578
Query: 277 ----------YLVALLQSLGEEKCIVFTSSVESTHRLCTLL------NHFGELRIKIKEY 320
+ + + IVFTSSV+STHRL LL +G L + EY
Sbjct: 579 LALLLDERRQHKMVESSEQAADLTIVFTSSVDSTHRLARLLQLLWAAGGYG-LPSHVAEY 637
Query: 321 SGLQRQSVRSKTLKAFREG-----KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 375
S R+ L+ R K+ VLV SD M RGMD+ V V+NYD P++ KTYI
Sbjct: 638 SSSIDTKQRAAILRRCRSSLGENEKVSVLVCSDGMARGMDLPSVGVVINYDVPSFAKTYI 697
Query: 376 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 433
HR GRTAR G+ GR +L +V +F+K+ D + +H S+ L++ P+YK+
Sbjct: 698 HRCGRTARCGRTGRAINVLKGGQVNKFRKMRSLIDGGADAVHEGSVKKDLVKGALPLYKA 757
>gi|242019954|ref|XP_002430423.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212515553|gb|EEB17685.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 518
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 155/455 (34%), Positives = 218/455 (47%), Gaps = 51/455 (11%)
Query: 2 GISSLFPVQVAVW-----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 56
GI+ FPVQ V E L+ D+C+++PTGSGKTL++ LPI+Q L R +
Sbjct: 50 GITHFFPVQHQVIPCVLENERKPYLLWPNDICVSAPTGSGKTLAFVLPILQVLYKRIIPK 109
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
+RALVVLP +DLA QV VF A L V L + S E + L K
Sbjct: 110 IRALVVLPVQDLANQVFKVFETYAEPTDLKVLLLTPKRSFTAEQNLLYKF---------- 159
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
D L S DI+V TPGRL++H+ T L YLV+DE DR++ WL
Sbjct: 160 --DDLGNYHSLTDIIVTTPGRLVEHLTKTNELNFSELKYLVIDEADRVMENVQNDWL--- 214
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
L + N S+ + S I K P K++ SATL+QDP
Sbjct: 215 YHLNKYIN----SECCKSYQAPIVSYNNI--------LNQKRPPN--KLLFSATLSQDPE 260
Query: 237 KLAQLDLHHP-LFLTTGET----------------RYKLPERLESYKLICESKLKPLYLV 279
KL L L HP LF + E+ +Y P L+ Y +C KPL L
Sbjct: 261 KLQALGLFHPRLFTSVVESGKSTEKNNNDESKFIGKYTTPAELKEYYTVCSKVNKPLLLH 320
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
LL S + + F +S +T +L +L + + +++ S QS R++ L+ F G
Sbjct: 321 HLLISKSWKNILCFVNSSAATFKLAFILKKLCKKKYTVQQLSANIVQSKRNRILQNFENG 380
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
K+ +L+SSDA+ RG+D+ V VV+YD P ++KTY+HR GRT RAG+ G L EV
Sbjct: 381 KVDILISSDALARGIDIPNVKYVVSYDCPKFVKTYVHRIGRTGRAGKEGHSLAFLTSKEV 440
Query: 400 KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
F K++ A +S + + +E YK
Sbjct: 441 TSFNKMVSAAGKNSVDVFNFEVEELEQYEVTYKKA 475
>gi|403417594|emb|CCM04294.1| predicted protein [Fibroporia radiculosa]
Length = 707
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 157/457 (34%), Positives = 223/457 (48%), Gaps = 87/457 (19%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE---------RDLCINSPTGSGKTLSYALPIVQTLSN 51
+GIS LF VQ AV + P + RDLC+++PTGSGKTL+Y LPIV+ LS
Sbjct: 212 LGISELFAVQTAVVPFLLTPKSLKSLYLPYNPPRDLCVSAPTGSGKTLAYVLPIVEILST 271
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V LRALVVLPTRDL QV++ F AI GL +G A GQ S E ++L+ ++
Sbjct: 272 RIVVRLRALVVLPTRDLVTQVRETFEAIGRGRGLKIGTATGQHSFTHEQAQLVADRSSQS 331
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQ 170
++ TR G L HL +LV+DE DRLL +++Q
Sbjct: 332 VSLFE----------------------------TRTGSQLMHLRFLVIDEADRLLAQSFQ 363
Query: 171 AWLPTVLQLTRSD-NENRFSDASTFLPSAFGSLKTIRRCG---------------VERGF 214
WL VL TR N +++ T ++ +TI R V
Sbjct: 364 DWLAQVLAATRPPANPEDLTESRTLADNSMAR-RTIPRADALAPNYLHLLHDVPRVRTDI 422
Query: 215 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL--------TTGET-----------R 255
+K K++ SATLT+DP+K+ L+LH P + T +T +
Sbjct: 423 DEKRESSCQKLLFSATLTRDPSKIVALNLHDPKYFVVRGRADGTAADTEEADLMSLVMEK 482
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF----- 310
+ +P L + ++C+S KPL L L+ G +VFT S EST RL L F
Sbjct: 483 FTMPSSLSEHMIVCDSASKPLMLFQLVHGHGVTNALVFTKSAESTTRLMRLFEFFEGAYS 542
Query: 311 ------GEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
G + I K YS R L F+ +I +L+ SD ++RG+D+ V++V
Sbjct: 543 GGPDPSGSIPKSIVTKAYSSDLSPGERKLILDKFKNQEIHILICSDLISRGIDISHVSHV 602
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
V+YD P ++ Y+HR GRTARAG+ G +TL+ + EV
Sbjct: 603 VSYDAPIDMRKYVHRVGRTARAGRAGDAWTLVEEQEV 639
>gi|380018891|ref|XP_003693352.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
Dbp73D-like [Apis florea]
Length = 577
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 220/435 (50%), Gaps = 69/435 (15%)
Query: 2 GISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
GI+ LFPVQ ++ W E + RD C+++PTGSGKTL+Y LPI+Q L +R V
Sbjct: 130 GINKLFPVQASMISWLLKCNEDRQQKWWLRDTCVSAPTGSGKTLAYVLPIIQILQSRLVP 189
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+R LVV+P ++LA QV VF L VGL G S +E ++K
Sbjct: 190 KVRCLVVVPVQELATQVYKVFVTYTSHTXLKVGLLSGASIFHEEQKNILK---------- 239
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
E E S VDI++ATPGRL+DHI T GF+L +L +LV+DE D+ + +LP
Sbjct: 240 --ESARGEYISIVDIIIATPGRLIDHILKTPGFSLNNLQFLVIDEADK--AADWLEYLP- 294
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
D R + F +R C V K++ SATL+QDP
Sbjct: 295 -------DPHYRRPRLTLF---------NLRSCEVPAQ----------KLLFSATLSQDP 328
Query: 236 NKLAQLDLHHPLFLTT----------------GE--TRYKLPERLESYKLICESKLKP-- 275
KL +L L P+ T+ G+ RY P+ L+ + C ++ KP
Sbjct: 329 EKLNRLGLFQPILFTSVLVKDKDDDVNLDKXIGDFIGRYTSPKELKEQAIECATEYKPAA 388
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLK 334
LY + + + K ++FT+S E+THRL LL E I + E S R K L
Sbjct: 389 LYHIIINNDITP-KTLIFTNSGETTHRLTILLQSLLSEKNIVVGELSAQLVSKEREKILN 447
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F GKIQ+L+ SDA+ RG+D+ + V++YD P +I YIHRAGRT RAG+ G ++L
Sbjct: 448 KFINGKIQILICSDALARGVDIPDIQLVISYDLPKHINGYIHRAGRTGRAGKSGTAISIL 507
Query: 395 HKDEVKRFKKLLQKA 409
+V FK +L A
Sbjct: 508 TPKQVGIFKNMLNNA 522
>gi|328790575|ref|XP_001122539.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Apis mellifera]
Length = 600
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 157/439 (35%), Positives = 217/439 (49%), Gaps = 78/439 (17%)
Query: 2 GISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
GI+ LFPVQ ++ W E + RD C+++PTGSGKTL+Y LPI+Q L +R V
Sbjct: 154 GINKLFPVQASMISWLLKCNEDRQQKWWLRDTCVSAPTGSGKTLAYVLPIIQILQSRLVP 213
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+R LVV+P ++LA QV VF L VGL G S +E ++K
Sbjct: 214 KVRCLVVVPVQELATQVYKVFVTYTSHTNLKVGLLSGASIFHEEQKNILK---------- 263
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
E E S VDI++ATPGRL+DHI T GF+L L +LV+DE D+ WL
Sbjct: 264 --ESARGEYISIVDIIIATPGRLIDHILKTPGFSLNDLQFLVIDEADK-----AADWL-- 314
Query: 176 VLQLTRSDNENRFSDASTFLPSAFG-----SLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
+LP +L + C + K++ SAT
Sbjct: 315 -----------------EYLPDPHYRRPRLTLLNLHSCEIPAQ----------KLLFSAT 347
Query: 231 LTQDPNKLAQLDLHHPLFLTTGET-----------------RYKLPERLESYKLICESKL 273
L+QDP KL +L L P+ T+ T RY P+ L+ + C ++
Sbjct: 348 LSQDPEKLNRLGLFQPILFTSVLTDKDDDVNLDKEVGDFIGRYTSPKELKEQAIECATEY 407
Query: 274 KP--LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRS 330
KP LY + + + K ++FT+S ++THRL LL F E I + E S R
Sbjct: 408 KPAALYHIIINNDIIP-KTLIFTNSGKTTHRLTILLQSFLSEKNIIVGELSAQLVSKERE 466
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
K L F GKIQ+L+ SDA+ RG+D+ V VV+YD P +I YIHRAGRT RAG+ G
Sbjct: 467 KILNKFINGKIQILICSDALARGVDIPDVQLVVSYDLPKHINGYIHRAGRTGRAGKSGTA 526
Query: 391 FTLLHKDEVKRFKKLLQKA 409
++L +V FK +L A
Sbjct: 527 ISILTSKQVGIFKHMLNNA 545
>gi|383850916|ref|XP_003701020.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Megachile rotundata]
Length = 679
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 216/431 (50%), Gaps = 67/431 (15%)
Query: 2 GISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
GI+ LFPVQ ++ W E G + RD C+++PTGSGKTL+Y LPIV L +R V
Sbjct: 232 GINKLFPVQASMISWLLKCNEDKQQGWWLRDTCVSAPTGSGKTLAYVLPIVHILQSRLVP 291
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+R LVV+P ++LA QV V A L+V L G SS E S +++
Sbjct: 292 KIRCLVVVPVQELAAQVYKVMVAYTSHTNLTVALLSGASSFQQEQSTILRT--------- 342
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
+ E SAVDI+VATPGRL+DHI T F+L L +LV+DE DR+
Sbjct: 343 ---NARGESVSAVDIVVATPGRLIDHILKTPEFSLSDLRFLVIDEADRV----------- 388
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+D +LP + + R K P + K++ SATL+QDP
Sbjct: 389 -------------TDWIDYLPEPHNHTPRLTLSNM-RSSK----PPVQKLLFSATLSQDP 430
Query: 236 NKLAQLDLHHPLFLTT----------------GE--TRYKLPERLESYKLICESKLKPLY 277
KL+ L L P+ TT G RY PE L + C + KPL
Sbjct: 431 KKLSHLRLFQPVLFTTVLVTDNDNDVNLDTEAGNYIGRYTGPEGLTERAVECTMEYKPLA 490
Query: 278 LVALLQSLGEE-KCIVFTSSVESTHRLCTLLNHFGELR-IKIKEYSGLQRQSVRSKTLKA 335
L LL K ++FT+S ES HRL LL ++ + + S + R L
Sbjct: 491 LYDLLTRNNTIIKTLIFTNSGESAHRLTILLGSLLAVKNVTVGTLSAQLKPKERENVLGK 550
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F G+IQ+L+SSDA+ RGMD+ V V++YD P +IK YIHRAGRT RAG+ G ++L
Sbjct: 551 FITGEIQILISSDALARGMDIPDVGLVISYDLPKHIKGYIHRAGRTGRAGKTGIVISILT 610
Query: 396 KDEVKRFKKLL 406
+V FK +L
Sbjct: 611 PKQVGLFKSML 621
>gi|307209142|gb|EFN86284.1| Probable ATP-dependent RNA helicase Dbp73D [Harpegnathos saltator]
Length = 660
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 160/434 (36%), Positives = 212/434 (48%), Gaps = 66/434 (15%)
Query: 2 GISSLFPVQVAV--WQETIGP----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
GI LFPVQ +V W + G + RD C+++PTGSGKTL+Y LPIVQ L R V
Sbjct: 205 GIVKLFPVQSSVIKWLHSCNKDRRVGWWLRDTCVSAPTGSGKTLAYVLPIVQQLQTRLVP 264
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+R LVVLP ++LA Q+ V L VGL G SS E S +IK+
Sbjct: 265 KIRCLVVLPVQELAAQIHKVMVTYTSHTNLKVGLLSGISSFEQEQSSIIKKT-------- 316
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S VDI++ATPGRL+ HI T GF+L+ L +LV+DE DR WL
Sbjct: 317 ----ARGNYLSTVDIVIATPGRLISHILKTPGFSLDFLRFLVIDEADRTTE-----WL-- 365
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+LP F S G + P K++ SATL+QDP
Sbjct: 366 -----------------QYLPE-FHSRAHSLTIGNVHSSEIAPAQ---KLLFSATLSQDP 404
Query: 236 NKLAQLDLHHPLFLTT----------------GE--TRYKLPERLESYKLICESKLKPLY 277
KL++L L P+ TT GE RY P L + C ++ KPL
Sbjct: 405 EKLSRLGLFQPILFTTVMVTGKDTDVNLDKMTGEFAGRYTSPGELTELAVECAAEYKPLA 464
Query: 278 LVALLQSLGE-EKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKA 335
L LL K +VFT+S ++ HRL L+ E + + E S R L
Sbjct: 465 LYHLLTRHDTISKTLVFTNSGDTAHRLALLIRSLLSERNVTVGELSAQLMPKQRESVLSK 524
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F G+ VL+SSDA+ RG+D+ V VV+YD P +IK YIHRAGRT RAG+ G ++L
Sbjct: 525 FASGETHVLISSDALARGLDIPEVQLVVSYDVPKHIKGYIHRAGRTGRAGKPGTAVSVLT 584
Query: 396 KDEVKRFKKLLQKA 409
++ FK++L A
Sbjct: 585 ASQIGIFKQMLNGA 598
>gi|326429455|gb|EGD75025.1| hypothetical protein PTSG_07250 [Salpingoeca sp. ATCC 50818]
Length = 751
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 215/399 (53%), Gaps = 50/399 (12%)
Query: 2 GISSLFPVQVAVWQETI---GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 58
G S LFPVQ + + + D+C+++PTGSGKTL+Y +PI+Q L R V LR
Sbjct: 256 GFSRLFPVQAVIVPDMLRSRHSAYPAGDICVSAPTGSGKTLAYVIPILQRLCTRVVPQLR 315
Query: 59 ALVVLPTRDLALQVKDVFAAIA------PAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
A+VVLPTR L QV VF A + V + V + GQ+++ E + + +P+L+
Sbjct: 316 AVVVLPTRQLVQQVHAVFEACSRNIHADSTVPIRVAMCAGQTALWKE--QQLLQPRLDGS 373
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
SAVDI++ TPGRL+DHI+ T GFTL+H+ +LVVDE DRLL ++YQ+W
Sbjct: 374 -------------SAVDIVITTPGRLVDHIDRTDGFTLQHVEFLVVDEADRLLMQSYQSW 420
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
L + + D + P + + R F P + KM SATL+
Sbjct: 421 LSKLHNCLFAGGR---PDPTNLTPQMYA----LMRAACAHNF---PGVHVQKMFFSATLS 470
Query: 233 QDPNKLAQLDLHHP---LFLTTGET-----------RYKLPERLESYKLICESKLKPLYL 278
+DP +A L L P L TG+ +P +L + ++C + KPL L
Sbjct: 471 RDPQIIANLRLCFPRMYLATQTGQAVVCVFGGKKGVNTVIPPQLHEHSIVCSASEKPLVL 530
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ LL SL ++ +VF SSVE+T RL TLL FG +R +++ S Q S LK F
Sbjct: 531 LYLLSSLQMDRTLVFASSVETTTRLYTLLKLFGAVR--VQQISSKQDARKSSGILKKFER 588
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 377
G+I VLV SD M RG+D+ V NV+ YD P+ KTYIHR
Sbjct: 589 GEISVLVCSDTMARGIDLANVENVICYDCPSKPKTYIHR 627
>gi|158286571|ref|XP_308815.4| AGAP006941-PA [Anopheles gambiae str. PEST]
gi|157020531|gb|EAA04138.4| AGAP006941-PA [Anopheles gambiae str. PEST]
Length = 655
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 154/464 (33%), Positives = 231/464 (49%), Gaps = 62/464 (13%)
Query: 1 MGISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 54
MG LFPVQ V W + P + RD+CI+SPTGSGKTL++A+P+VQ L R
Sbjct: 184 MGFKRLFPVQEKVIPWILEAHQKPAP-FWPRDVCISSPTGSGKTLAFAVPVVQLLLKRVA 242
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLS-VGLAVGQSSIADEISELIKRPKLEAGI 113
+RALV+LP ++LA QV VF + + V L+ G + E +L+K E
Sbjct: 243 PAIRALVILPVQELAEQVFQVFRQLCDGTNIHPVVLSRGMQ-LEVEQQKLVKYCNGE--- 298
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
Y P+ VDI+V T GRL++H+++T+GFTL HL +L+VDE D+++ + WL
Sbjct: 299 -YMPK---------VDIVVTTAGRLIEHLHSTKGFTLRHLRFLIVDEADKVMNQIQNDWL 348
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+ + + +++ + L S R +P+ K++ SAT +
Sbjct: 349 YHLNKHVKHESDEYLLGRTADLLSQSELFDRAR----------QPH----KLLFSATFKR 394
Query: 234 DPNKLAQLDLHHPLFLT--------------TGETR------------YKLPERLESYKL 267
D KL L L HP T T T+ Y P L+
Sbjct: 395 DAEKLKTLKLFHPKLFTAVIDPQERTMMAQSTATTQAAEPRRGNFAGQYTTPAELKECIC 454
Query: 268 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 327
+ E + KPL L L++ G K +VFT+ + ++HRL +L + I+E+S +
Sbjct: 455 LTEQRSKPLTLYGLIRENGYRKFLVFTNGINTSHRLSFVLQRLFGTDMVIEEWSSSLSPA 514
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
R L F GK+ ++ +DA+ RG+D+E + V++YD P +I YIHR GRTARAG
Sbjct: 515 TRKSVLNRFSLGKVNGIICTDALARGIDIENIEVVISYDMPNHIDKYIHRIGRTARAGLR 574
Query: 388 GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 431
G TLL +DE K+F LL++A+ + SL E Y
Sbjct: 575 GTAITLLAEDEKKKFNALLKEANKRELETMEVSPSLEEEFAAKY 618
>gi|312376445|gb|EFR23526.1| hypothetical protein AND_12724 [Anopheles darlingi]
Length = 749
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 230/468 (49%), Gaps = 61/468 (13%)
Query: 1 MGISSLFPVQVAV--W--QETIGPGLF-ERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
MG LFPVQ V W + P F RD+CI+SPTGSGKTL++A+PIVQ L R
Sbjct: 166 MGYKRLFPVQEKVIPWILEAHAKPAPFWPRDVCISSPTGSGKTLAFAVPIVQLLLKRVAP 225
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALV+LP ++LA QV VF + ++ + + S E +A + Y
Sbjct: 226 AVRALVILPVQELAEQVYGVFEKLCQGTKITPLVLSRKQSFHQE----------QAKLVY 275
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
Q +Q A DI+V T GRL++H+++T GFTL HL +LV+DE DR++ + WL
Sbjct: 276 TLHG--QFIQKA-DIVVTTAGRLVEHLHSTAGFTLCHLRFLVIDEADRVMNQIQNDWLYH 332
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + + ++ L G L D+P + K++ SATL++DP
Sbjct: 333 LNKHVKQQSDE------YLLGRTAGQLSQTE-------LFDRPQ-QPHKLLFSATLSRDP 378
Query: 236 NKLAQLDLHHPLFLT----------------TGETR-------------YKLPERLESYK 266
KL L HP T G T+ Y P L
Sbjct: 379 EKLQTFKLFHPKLFTAVRDPTERAIALSKSGAGSTKQNALLRRGKFIGQYTTPSELRELV 438
Query: 267 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326
+ ++KPL L AL++ G K +VFT+ ++ +HRL +L + I+E+S
Sbjct: 439 CYTQFRIKPLTLFALIRQAGYRKFLVFTNGIDGSHRLSFVLQRLFGTEMVIEEWSSSLTP 498
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
+ R L F GK+ ++ +DA+ RG D++ + VV+YD P +I TYIHR GRTARAG
Sbjct: 499 ATRRSVLHRFSLGKVNGIICTDALARGFDIDDIEIVVSYDMPRHISTYIHRIGRTARAGN 558
Query: 387 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
G TLL +E K+F +L++A + I SS+ E Y +
Sbjct: 559 RGTSITLLIDEEKKKFNSMLKEAGKEELEAVEIQSSVEEEYAGKYSAA 606
>gi|350416892|ref|XP_003491155.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like [Bombus
impatiens]
Length = 615
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 215/439 (48%), Gaps = 77/439 (17%)
Query: 2 GISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
GI+ LFPVQ ++ W + + RD C+++PTGSGKTL+Y LPIVQ L R V
Sbjct: 168 GINKLFPVQASMVSWLLKCDKDRQQNWWLRDTCVSAPTGSGKTLAYVLPIVQILQFRLVP 227
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+R LVV P ++LA+Q+ V L VGL G S+ +E + K
Sbjct: 228 KVRCLVVAPVQELAMQIYKVMVTYTSHTNLRVGLLSGASAFHEEQRNIRK---------- 277
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
E+ E S VDI+VATPGRL+DHI T GF+L+ + +LV+DE D WL
Sbjct: 278 --ENDRGEYISLVDIVVATPGRLIDHILKTSGFSLDDIRFLVIDEAD-----TAADWL-- 328
Query: 176 VLQLTRSDNENRFSDASTFLPSAFG-----SLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
+LP +L +R + K++ SAT
Sbjct: 329 -----------------EYLPEPHYQTPRLTLSNLRSSKIPAQ----------KLLFSAT 361
Query: 231 LTQDPNKLAQLDLHHPLFLT----TGET--------------RYKLPERLESYKLICESK 272
L+QDP KL +L L HP+ T TG+ RY PE L+ + CE++
Sbjct: 362 LSQDPEKLNRLGLFHPILFTSVLVTGKDDDVNLDKEAVNFIGRYTSPEELKEEAIECEAE 421
Query: 273 LKPLYLVALLQSLG-EEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRS 330
KP+ L LL G K +VFT+S + HRL LL + I + E S R
Sbjct: 422 YKPVALYQLLIRDGITSKALVFTNSGGTAHRLTILLQSLLSKKNIVVGELSAQLVSKERE 481
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
L F G IQ+LV SDA+ RG+D+ V V++YD P +I YIHRAGRT RAG+ G
Sbjct: 482 DILTKFTSGNIQILVCSDALARGVDIPNVQLVISYDLPKHINGYIHRAGRTGRAGKSGTA 541
Query: 391 FTLLHKDEVKRFKKLLQKA 409
++L +VK FK +L A
Sbjct: 542 ISILTPKQVKIFKHMLNNA 560
>gi|332018269|gb|EGI58874.1| Putative ATP-dependent RNA helicase Dbp73D [Acromyrmex echinatior]
Length = 761
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 214/433 (49%), Gaps = 66/433 (15%)
Query: 2 GISSLFPVQVAV--WQETIGP----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
GI LFPVQ + W G + +D C+++PTGSGKTL+Y LPIVQ L R V
Sbjct: 314 GIIKLFPVQSNIIKWLHKCNMHRKIGWWPKDTCVSAPTGSGKTLAYVLPIVQELQTRFVP 373
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+R LVVLP ++LA Q+ V L VGL G SS E + +IK K E G
Sbjct: 374 KIRCLVVLPVQELAAQIHKVMVTYTSHTDLKVGLLSGASSFKQEQNSIIK--KTERG--- 428
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
+ S VDI++ATPGRL+DHI T GF+L++L +LV+DE DR + +LP
Sbjct: 429 -------QYLSRVDIIIATPGRLLDHILKTPGFSLDYLRFLVIDEADRATE--WLQYLP- 478
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + P G++++ + + K++ SATL+QDP
Sbjct: 479 --------------EFHSRPPLTLGNMRSSKVIPAQ------------KLLFSATLSQDP 512
Query: 236 NKLAQLDLHHPLFLTTGET-----------------RYKLPERLESYKLICESKLKPLYL 278
KL++L L P TT T RY P L + C KP+ L
Sbjct: 513 EKLSRLGLFQPKLFTTVVTDKDIDINLDKVAGDFIGRYTSPGELTELAVECPPSYKPIVL 572
Query: 279 VALLQSLG-EEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
LL K +VFT+S + HR + E + + E S R L F
Sbjct: 573 YQLLTKHDIIPKTLVFTNSGQHAHRLALLMQLLLSEWNVTVGELSAQLASKQREDILSKF 632
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
GKI VL+SSDA+ RG+D+ V VV+YD P +IK YIHRAGRT RAG+ G ++L
Sbjct: 633 ANGKIHVLISSDALARGLDILDVQLVVSYDLPKHIKGYIHRAGRTGRAGKSGTAVSILTP 692
Query: 397 DEVKRFKKLLQKA 409
++V FK++L A
Sbjct: 693 NQVGIFKQMLSGA 705
>gi|241751464|ref|XP_002406051.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215506028|gb|EEC15522.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 393
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 136/407 (33%), Positives = 204/407 (50%), Gaps = 68/407 (16%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD+C+++PTGSGKTL+Y +PIV++L R +R +RA+VVLP ++LA QV+ VF
Sbjct: 4 RDICVSAPTGSGKTLAYVIPIVESLKPRIMRAIRAVVVLPVKELAAQVQAVFQQYLRGTS 63
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
L L G ++E L+ + + S VDI+VATPGRL+DHI
Sbjct: 64 LRSQLVTGTKPFSEEQLSLVHKNA-------------RGYSSLVDIIVATPGRLLDHIRK 110
Query: 145 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 204
T GF+L L + V+DE DR++ + +P V Q
Sbjct: 111 TPGFSLHLLKFFVLDEADRVIEDVRTTLIPEVEQAVEPAQ-------------------- 150
Query: 205 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGE---------- 253
K++ SATLTQDP KL L L P LF G+
Sbjct: 151 -------------------KLLYSATLTQDPEKLQSLMLFQPKLFTAAGKRDPAVERAAF 191
Query: 254 -TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y P+ L + + ++ KPL L L+ + G + FT + + HRLC ++ G
Sbjct: 192 AGKYTTPQGLSEFYRVVQNAKKPLALWDLVANRGYTGTLCFTGTKDDAHRLCLVIKEMGG 251
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+R++ E+S + R++ L+ F G + +LV S+ + RG+DV V NVV YD P Y+K
Sbjct: 252 VRVE--EFSSDLSATERARVLRRFASGGLDLLVCSNVLARGLDVANVRNVVCYDPPKYVK 309
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
TY+HR GRTARAG G T L + +++ F+ +L A P+ ++
Sbjct: 310 TYVHRVGRTARAGVPGTAVTFLRQGQLEAFQTMLSSAGKS--PVEAL 354
>gi|340711741|ref|XP_003394428.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like [Bombus
terrestris]
Length = 659
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 157/439 (35%), Positives = 215/439 (48%), Gaps = 77/439 (17%)
Query: 2 GISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
GI+ LFPVQ ++ W + + RD C+++PTGSGKTL+Y LPIVQ L R V
Sbjct: 212 GINKLFPVQASMVSWLLKCNKERQQKWWLRDTCVSAPTGSGKTLAYVLPIVQILQFRLVP 271
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+R LVV P ++LA+Q+ V L VGL G S+ +E + K
Sbjct: 272 KVRCLVVAPVQELAMQIYKVMVTYTSHTNLRVGLLSGASAFHEEQRNIRK---------- 321
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
E+ E S VDI+VATPGRL+DHI T GF+L+ + +LV+DE D WL
Sbjct: 322 --ENDRGEYISLVDIVVATPGRLIDHILKTSGFSLDDIRFLVIDEAD-----TAADWL-- 372
Query: 176 VLQLTRSDNENRFSDASTFLPSAFG-----SLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
+LP +L +R + K++ SAT
Sbjct: 373 -----------------EYLPEPHYQTPRLTLSNLRSSKIPAQ----------KLLFSAT 405
Query: 231 LTQDPNKLAQLDLHHPLFLTT----------------GE--TRYKLPERLESYKLICESK 272
L+QDP KL +L L HP+ T+ G RY PE L+ + CE++
Sbjct: 406 LSQDPEKLNRLGLFHPILFTSVLVTDKDDDVNLDKEVGNFIGRYTSPEELKEEAIECEAE 465
Query: 273 LKPLYLVALLQSLG-EEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRS 330
KP+ L L+ G K +VFT+S + HRL LL + I + E S R
Sbjct: 466 YKPVALYQLIIRNGITSKVLVFTNSGGTAHRLTILLQSLLSKENIVVGELSAQLVSKERE 525
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
L F GKIQ+LV SDA+ RG+D+ V V++YD P +I YIHRAGRT RAG+ G
Sbjct: 526 DILTKFSSGKIQILVCSDALARGVDIPNVQLVISYDLPKHINGYIHRAGRTGRAGKSGTA 585
Query: 391 FTLLHKDEVKRFKKLLQKA 409
++L +VK FK +L A
Sbjct: 586 ISILTPKQVKIFKHMLNNA 604
>gi|19075832|ref|NP_588332.1| ATP-dependent RNA helicase Dbp6 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74662371|sp|Q76PD3.1|DBP6_SCHPO RecName: Full=ATP-dependent RNA helicase dbp6
gi|3581903|emb|CAA20842.1| ATP-dependent RNA helicase Dbp6 (predicted) [Schizosaccharomyces
pombe]
Length = 604
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 221/440 (50%), Gaps = 62/440 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
I+ F VQ AV + G + D+C+++ TGSGKTLSY +PIVQ LS+R V
Sbjct: 145 NITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVP 204
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LR +V++PTR+L +QV F GL V GQ S+ E +L
Sbjct: 205 RLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG---------- 254
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
E + +D+LV+TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ T
Sbjct: 255 ------DENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDT 308
Query: 176 VLQLTRS----DNENRFSD-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 226
V+ N++ D + TFLP +L R P P L K+V
Sbjct: 309 VMMEISHPKCLQNKSNILDLDQNISPTFLPD-IDTLLPYRL----------PSP-LQKLV 356
Query: 227 LSATLTQDPNKLAQLDLHHPLFLTT----------GETR-----YKLPERLESYKLICES 271
SATLT+DP+K+A L LH+P + GE + +P L+ Y + S
Sbjct: 357 FSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSS 416
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQSV 328
+ KP+ L L+ S + F S E+ HRL L++ ++ +
Sbjct: 417 E-KPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDE 475
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R K + F G + +LV SD M RG+DV NV+NYD P +++Y+HR GRTARAG+ G
Sbjct: 476 RKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREG 535
Query: 389 RCFTLLHKDEVKRFKKLLQK 408
+TL+ E F KL+++
Sbjct: 536 FAWTLVQSHEGHHFSKLVKQ 555
>gi|427792293|gb|JAA61598.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 783
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 161/464 (34%), Positives = 232/464 (50%), Gaps = 65/464 (14%)
Query: 3 ISSLFPVQ--VAVW---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
I LFPVQ V W E L RD+C+++PTGSGKTL+Y +PI++ L R VR +
Sbjct: 320 IRKLFPVQEKVVPWLLSSEQRRSHLPPRDICVSAPTGSGKTLAYVIPIIEDLKVRVVRAV 379
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
RA+VVLP ++LA QV VF L+V L G + A+E L+++
Sbjct: 380 RAVVVLPVKELAAQVHAVFLQYVGTTSLNVQLVTGTRTFAEEQGLLVRKG---------- 429
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+ S VDI+VATPGRL+DHI T GF L L Y V+DE DR++ + +P V
Sbjct: 430 ---AKGYASLVDIVVATPGRLLDHIRKTPGFNLHLLKYFVLDEADRVIEDVQTTLIPEVE 486
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV-----------KMV 226
Q + FG+ K CG + +P V K++
Sbjct: 487 Q------------------AVFGTSKMNCTCGSTVHNRLCTHPLTVCSLQHCREPVQKLL 528
Query: 227 LSATLTQDPNKLAQLDLHHP-LFLTTGET--------------RYKLPERLESYKLICES 271
SATLTQDP+KL L L P LF T +Y P+ L + +
Sbjct: 529 YSATLTQDPDKLQSLMLFQPKLFTATAAVSMPGDEQRQKTFVGKYTTPQGLSEFYYLTHD 588
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 331
KPL + L+ + G + FT+S E HRL +L G +R + E+S + R++
Sbjct: 589 NTKPLAVWDLVANHGFRDTLCFTASKEDAHRLSLVLKEMGSIRAE--EFSAKLSIADRAR 646
Query: 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
L+ F GK+ +LV S+ + RG+DV V +V+ YD P +IKTY+HR GRTARAG G
Sbjct: 647 VLRKFASGKLDILVCSNVLARGLDVANVRHVICYDPPKFIKTYVHRVGRTARAGVPGTAV 706
Query: 392 TLLHKDEVKRFKKLLQKA-DNDSCPIHSIPSSLIESLRPVYKSG 434
T L + +++ FK++L A D P+ + +E+L+ Y+
Sbjct: 707 TFLRQGQLQAFKEMLSSAGKTDIQPLDLSNTDELEALQSKYRDA 750
>gi|164656042|ref|XP_001729149.1| hypothetical protein MGL_3616 [Malassezia globosa CBS 7966]
gi|159103039|gb|EDP41935.1| hypothetical protein MGL_3616 [Malassezia globosa CBS 7966]
Length = 730
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 211/410 (51%), Gaps = 52/410 (12%)
Query: 1 MGISSLFPVQVAVWQETIG---------PGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51
+GI F VQ AV + P RDLCI++PTGSGKTL+Y +PI++ L
Sbjct: 233 LGIREWFAVQGAVIPALLRDVHAHHLYLPYAPPRDLCISAPTGSGKTLAYVVPIIEVLHK 292
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R + LRAL+++PTRDLA+QV+DV A+ GL + G S E +L++
Sbjct: 293 RTIPQLRALILVPTRDLAVQVRDVLEAVGKGSGLRYAMITGNHSFRHEQDQLVR------ 346
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
DV +S DIL+ATPGRL+DH+ TRGFTLEHL YLV+DE DRLL +++Q
Sbjct: 347 ----SDSDV---NRSPTDILIATPGRLVDHLRGTRGFTLEHLRYLVIDEADRLLGQSFQQ 399
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
W+PT+L E R + PS + R P + K++ SATL
Sbjct: 400 WVPTLLDAL----EPRPHSGTCAPPSLWEEAGQEHNHTWTRDDMQVPQASVQKLLFSATL 455
Query: 232 TQDPNKLAQLDLHHPLFLT------------TGETRYKLPERLESYKLICESKLKPLYLV 279
T+DP K+ L L P F+ E + LP L+ + L+ + K LYL+
Sbjct: 456 TRDPAKVGALRLRQPQFIRVRDPGISDGQGLVHEQHFALPAGLQQHMLVAPTSQKVLYLL 515
Query: 280 ALLQSLGEE-----KCIVFTSSVESTHRLCTLLNHFGEL--------RIKIKEYSGLQRQ 326
LL + + + FT SVE+ +RL L+ F E ++++ YS
Sbjct: 516 HLLHTPSADTEPLRHALCFTKSVETANRLVRLVAFFEEAWSRHTNTPALQVRFYSSDLGT 575
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYI 375
R + L+ F+ G I +LV SD + RG+D+ V +V++YD P ++ TYI
Sbjct: 576 GERIQLLRDFQHGHIDLLVCSDLIARGIDLPHVRHVISYDVPLIWLNTYI 625
>gi|195997819|ref|XP_002108778.1| hypothetical protein TRIADDRAFT_52102 [Trichoplax adhaerens]
gi|190589554|gb|EDV29576.1| hypothetical protein TRIADDRAFT_52102 [Trichoplax adhaerens]
Length = 625
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 207/390 (53%), Gaps = 70/390 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFE-------------RDLCINSPTGSGKTLSYALPIVQT 48
G+S LFPVQ TI P + + D+C+++PTGSGKTL Y LPI+Q
Sbjct: 203 GMSHLFPVQ-----STIIPTILKDYQHFGLCTPLPVHDICVSAPTGSGKTLVYVLPIIQV 257
Query: 49 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 108
L R+V LRAL+++PT DLA QVK VF GL + A+GQ + E ELI
Sbjct: 258 LMRRSVMLLRALILVPTADLAYQVKKVFEQFNEGSGLKIATAIGQRNFKIEQGELI---- 313
Query: 109 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 168
D L +S VDIL+ATPGRL+DHIN T+ FTLEHL +LV+DE D+LL +
Sbjct: 314 ----------DALGG-RSNVDILIATPGRLIDHINMTKHFTLEHLRFLVLDEADKLLISS 362
Query: 169 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV----- 223
+ + + L+ ++ S +P L T R D P P +V
Sbjct: 363 HHQLIMSALKACYK------AEQSQIIPPNKFILHTTPR--------DPPIPSIVSKYCN 408
Query: 224 ------KMVLSATLTQDPNKLAQLDLHHPLF---------LTTGETRYKL-PERLESYKL 267
K++ SATLT DP KLA L+L PL L+T E Y + P L Y +
Sbjct: 409 NKLPLQKLLFSATLTYDPEKLAPLELFSPLLYQISDQKSNLSTNEIDYYVTPAELTEYYI 468
Query: 268 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 327
ICE KPL ++ +Q+L + + FT+S EST RL LL+ FG++R+ S + R+
Sbjct: 469 ICEPGEKPLTIIHFMQALKHLRVLCFTNSKESTKRLSLLLSIFGDIRVATLS-SEVPRKD 527
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
R + +K F G+I +L+ SD + RG+D+E
Sbjct: 528 -RKRIIKQFSSGEIDLLICSDTVARGIDIE 556
>gi|170032268|ref|XP_001844004.1| ATP-dependent RNA helicase DDX51 [Culex quinquefasciatus]
gi|167872120|gb|EDS35503.1| ATP-dependent RNA helicase DDX51 [Culex quinquefasciatus]
Length = 695
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 153/453 (33%), Positives = 234/453 (51%), Gaps = 68/453 (15%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE----------RDLCINSPTGSGKTLSYALPIVQTLS 50
+G LFPVQ ET+ P + + RD+CI+SPTGSGKTL++A+P+VQ L
Sbjct: 159 LGFKRLFPVQ-----ETVIPWILDAHQKPTPFWPRDVCISSPTGSGKTLAFAVPVVQLLL 213
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
NR +RALV+LP ++LA QV VF + + L + + + E S+L+ R E
Sbjct: 214 NRIAPAIRALVILPVKELAEQVFGVFEKLCEGTKIRPLLLSRKQTFSVEQSKLVARFNGE 273
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
Y P+ VDI+V T GRL++H+++T GFTL+HL +L++DE DR++ +
Sbjct: 274 ----YIPK---------VDIVVTTAGRLVEHLHSTTGFTLKHLRFLIIDEADRVMDQIQN 320
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
WL + + + +++ L A G L + DKP + K++ SAT
Sbjct: 321 DWLYHLNKHVKQESDE------YLLGRAAGQLS-------QSELFDKPR-QPHKLLFSAT 366
Query: 231 LTQDPNKLAQLDLHHPLFLTT------------------GETR------YKLPERLESYK 266
L+QDP KL L HP T E R Y P L
Sbjct: 367 LSQDPEKLNTFKLFHPKLFTAVSDPAKRLAALVRHHQQAEEKRGKFIGQYATPMELRELV 426
Query: 267 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326
+ + K+KPL L AL++ G ++ + FT+S++ +HRL +L + I+E+S
Sbjct: 427 CMTQFKIKPLTLFALIKENGYKRFLCFTNSIDGSHRLSFVLQKMFGTELVIEEWSSSLSP 486
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
R L F GK+ ++ +DA+ RG+D++ ++ V++YD P +I TYIHR GRT RAG
Sbjct: 487 QARKSVLSRFALGKVNGIICTDALARGIDIDDIDVVISYDMPRHINTYIHRIGRTGRAGN 546
Query: 387 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
G T+L +E K+F+ L +A P+ SI
Sbjct: 547 RGTSITMLIDEERKKFQSTLAEAGKQ--PLESI 577
>gi|193596603|ref|XP_001949748.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Acyrthosiphon pisum]
Length = 528
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 161/464 (34%), Positives = 229/464 (49%), Gaps = 67/464 (14%)
Query: 2 GISSLFPVQ--VAVW---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 56
G + FPVQ + W + + RDLCI++PTGSGKTLSY LPI+QTL +
Sbjct: 67 GCTHFFPVQNQLVPWIIKTQKHWDYRWLRDLCISAPTGSGKTLSYVLPIIQTLKTFSRHQ 126
Query: 57 LRALVVLPTRDLALQVKDVF-AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LRAL+VLPT+DLA+QV VF I A L V L ++ ++ E I + Y
Sbjct: 127 LRALIVLPTKDLAVQVYKVFLYYIKNAFDLRVLLLESKNMTLEKEKERI--------VQY 178
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
D +L VDI+V TPGRL+DH+ T GF+L++L +LV+DE D WL
Sbjct: 179 DSSIGWIDL---VDIIVTTPGRLVDHLYYTEGFSLKNLRFLVLDEADSFTNILQNEWL-- 233
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
++ +D+ + +L T+ D P R +++ SATLTQDP
Sbjct: 234 ----------HKVNDSLAYNGPTKCTLNTLN---------DSP-QRTQRLLFSATLTQDP 273
Query: 236 NKLAQLDLHHP-LFL-------------TTGET---------RYKLPERLESYKLICESK 272
KL L L P LF TTG +Y P+ L+ Y ++C +
Sbjct: 274 EKLKFLKLFEPKLFTSIIKRKNTQLPTDTTGTDEPVRGDFVGKYTTPKELKEYMVLCPEE 333
Query: 273 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR-----IKIKEYSGLQRQS 327
KPL L L++S G ++ I F S HRL LL E +++ E S Q
Sbjct: 334 NKPLTLYHLIRSKGLKRVICFVKSKIEVHRLTRLLCKLSEFDTNNSPLRVNEISSDVTQK 393
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
S +K F GKI VL+ +D++ RG+D+E ++ V+ Y+ P Y K YIHR GRTARAG
Sbjct: 394 AHSGYIKQFSNGKIDVLICTDSLARGIDIELISCVILYNVPKYPKNYIHRIGRTARAGHK 453
Query: 388 GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 431
G+ T + + + F+ +L A S + S +E +Y
Sbjct: 454 GKAITFVTPEHKELFENVLNSAGKTSLKNMKVDISDLEQYEQMY 497
>gi|328702076|ref|XP_001949723.2| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Acyrthosiphon pisum]
Length = 528
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 161/464 (34%), Positives = 228/464 (49%), Gaps = 67/464 (14%)
Query: 2 GISSLFPVQ--VAVW---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 56
G + FPVQ + W + + RDLCI++PTGSGKTLSY LPI+QTL +
Sbjct: 67 GCTHFFPVQNQLVPWIIKTQKHWDYRWLRDLCISAPTGSGKTLSYVLPIIQTLKTFSRHQ 126
Query: 57 LRALVVLPTRDLALQVKDVF-AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LRAL+VLPT+DLA QV VF I A L V L ++ ++ E I + Y
Sbjct: 127 LRALIVLPTKDLAAQVYKVFLYYIKNAFDLRVLLLESKNMTLEKEKERI--------VQY 178
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
D +L VDI+V TPGRL+DH+ T GF+L++L +LV+DE D WL
Sbjct: 179 DSSIGWIDL---VDIIVTTPGRLVDHLYYTEGFSLKNLRFLVLDEADSFTNILQNEWL-- 233
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
++ +D+ + +L T+ D P R +++ SATLTQDP
Sbjct: 234 ----------HKVNDSLAYNGPTKCTLNTLN---------DSP-QRTQRLLFSATLTQDP 273
Query: 236 NKLAQLDLHHP-LFL-------------TTGET---------RYKLPERLESYKLICESK 272
KL L L P LF TTG +Y P+ L+ Y ++C +
Sbjct: 274 EKLKFLKLFEPKLFTSIIKRKNTQLPTDTTGTDEPVRGDFVGKYTTPKELKEYMVLCPEE 333
Query: 273 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR-----IKIKEYSGLQRQS 327
KPL L L++S G ++ I F S HRL LL E +++ E S Q
Sbjct: 334 NKPLTLYHLIRSKGLKRVICFVKSKIEVHRLTRLLCKLSEFDTNNSPLRVNEISSDVTQK 393
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
S +K F GKI VL+ +D++ RG+D+E ++ V+ Y+ P Y K YIHR GRTARAG
Sbjct: 394 AHSGYIKQFSNGKIDVLICTDSLARGIDIELISCVILYNVPKYPKNYIHRIGRTARAGHK 453
Query: 388 GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 431
G+ T + + + F+ +L A S + S +E +Y
Sbjct: 454 GKAITFVTPEHKELFENVLNSAGKTSLKNMKVDISDLEQYEQMY 497
>gi|157820497|ref|NP_001100620.1| ATP-dependent RNA helicase DDX51 [Rattus norvegicus]
gi|149063713|gb|EDM14036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 601
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 223/461 (48%), Gaps = 89/461 (19%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 185 GISSYFPVQAAVIPALLESADNGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 244
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF L V L GQ S+A E L++ K
Sbjct: 245 RVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTAD 302
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G C DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 303 GFC-----------CLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 351
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLS 228
WLP V+ A+ + GS ++R V P L K++ S
Sbjct: 352 WLPRVVA------------AAFYTEDPTGSCALLQRTQPQAVTAASTCIPQMPLQKLLFS 399
Query: 229 ATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKL 273
ATLTQ+P KL +L L+ P +T +Y P L + + C
Sbjct: 400 ATLTQNPEKLQRLGLYQPRLFSTRLGHQSPRDTVEVDENLGKYTFPVGLTHHYVPCRLSS 459
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333
KPL + L+ + + + FT+S E++HRL L FG + + E+S R K L
Sbjct: 460 KPLIVFHLVLGMNFSRALCFTNSRENSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKKIL 517
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
K F +GKIQ++ GRTARAG+ G+ FTL
Sbjct: 518 KQFEQGKIQLV----------------------------------GRTARAGKTGQAFTL 543
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
L K + ++F +++ +A H +P L++ L Y++
Sbjct: 544 LLKVQERKFLQMVSEAGVPELACHEVPRKLLQPLVARYETA 584
>gi|293334099|ref|NP_001169826.1| uncharacterized protein LOC100383718 [Zea mays]
gi|224031859|gb|ACN35005.1| unknown [Zea mays]
Length = 174
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/177 (63%), Positives = 132/177 (74%), Gaps = 7/177 (3%)
Query: 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 142
VGLSVG AVGQSSIADE+S L+ +PK E D E V E Q+ +DILVATP RLMDHI
Sbjct: 2 VGLSVGSAVGQSSIADEVSSLVPKPKQEFYPTIDEEYVQMEPQTKIDILVATPERLMDHI 61
Query: 143 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS---DASTFLPSAF 199
N T GF+LEHL YLV+DETDR++REAYQ+WLPTV+QLT S ++ D+ T L
Sbjct: 62 NMTNGFSLEHLQYLVIDETDRMVREAYQSWLPTVIQLTHSISQGHSWHDIDSQTLL---- 117
Query: 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 256
L +IRR GVER FK K YPRL KMVLSATLTQDP+KL+QL+LHHPL L +G+ RY
Sbjct: 118 HPLTSIRRSGVERVFKGKCYPRLGKMVLSATLTQDPSKLSQLELHHPLLLNSGKKRY 174
>gi|1749726|dbj|BAA13920.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 490
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 149/440 (33%), Positives = 217/440 (49%), Gaps = 62/440 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
I+ F VQ AV + G + D+C+++ TGSGKTLSY +PIVQ LS+R V
Sbjct: 31 NITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVP 90
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LR +V++PTR+L +QV F GL V GQ S+ E +L
Sbjct: 91 RLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG---------- 140
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
E + +D+LV+TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ T
Sbjct: 141 ------DENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDT 194
Query: 176 VLQLTRS----DNENRFSD-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 226
V+ N++ D + TFLP +L R P P L K+V
Sbjct: 195 VMMEISHPKCLQNKSNILDLDQNISPTFLPD-IDTLLPYRL----------PSP-LQKLV 242
Query: 227 LSATLTQDPNKLAQLDLHHPLFLTT----------GETR-----YKLPERLESYKLICES 271
SATLT+DP+K+A L LH+P + GE +P L+ Y + S
Sbjct: 243 FSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVLSVPPTLQEYHVSVSS 302
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQSV 328
+ KP+ L L+ S + F S E+ HRL L++ ++ +
Sbjct: 303 E-KPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDE 361
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R K + F G + +LV SD M RG+ NV+NYD P +++Y+HR G TARAG+ G
Sbjct: 362 RKKIISWFATGDLNLLVCSDLMARGIHFSNTQNVINYDPPFSVRSYVHRIGPTARAGREG 421
Query: 389 RCFTLLHKDEVKRFKKLLQK 408
+TL+ E F KL+++
Sbjct: 422 FAWTLVQSHEGHHFSKLVKQ 441
>gi|256075757|ref|XP_002574183.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 837
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/481 (33%), Positives = 222/481 (46%), Gaps = 99/481 (20%)
Query: 1 MGISSLFPVQVAV--------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
+GI+ FPVQ AV + P RD+CI +PTGSGKTL+YA+PI+Q NR
Sbjct: 70 IGITHFFPVQSAVIPYMLDCYFTSKHRPLCRPRDICICAPTGSGKTLAYAVPIIQLFLNR 129
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
R +RAL+++P RDLA+QV F+ + + VG+ G S + E ++I
Sbjct: 130 VHRFIRALIIVPVRDLAVQVYKTFSQLVNGTDIQVGVLAGIKSFSKEQEDIINLTNESYS 189
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+ VDI++ATPGRL+DH+ T GF++E L LV+DE DR++ E Q W
Sbjct: 190 V-------------KVDIVIATPGRLVDHLYNTPGFSMERLRILVIDEADRVIVEEKQNW 236
Query: 173 LPTVLQL----TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR-----LV 223
T+ + T S N+N +S+ S S + I G Y R L
Sbjct: 237 YHTLEDVLYYYTSSTNQNSWSNVSVRKRS-----RPIPTVGYH-------YDRSVDITLQ 284
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY--------------------------K 257
K+++SATLT DP L Q +L+ P+ T+ R+ K
Sbjct: 285 KILVSATLTHDPEPLKQFNLYFPILFTSNRIRHDENHIDAVPHDHKNAENNSSEIKKQEK 344
Query: 258 LPERLESYKLICESK-------------------------LKPLYLVALLQSLGEEK--- 289
E E +I K KP V L L +K
Sbjct: 345 CDENREIPNVISHVKSSENHTTAGVGQFMVPESLEEFLVTAKPDIRVLFLVYLVRQKHKK 404
Query: 290 -CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
+ F ++V+ RL LL F IK K S R + L F G+ Q+LV +D
Sbjct: 405 RILCFANTVDCAKRLNMLLASFKG--IKSKFLSSHLHPDKRQRILNLFSVGQCQILVCTD 462
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+M RG+D+ V VV+YD P IK YIHR GRTARAG+ G + LL ++ FKK L+
Sbjct: 463 SMARGIDINDVECVVSYDVPPSIKIYIHRIGRTARAGKKGTAYNLLSTNQFYHFKKDLKL 522
Query: 409 A 409
A
Sbjct: 523 A 523
>gi|353232410|emb|CCD79765.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 603
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/481 (33%), Positives = 222/481 (46%), Gaps = 99/481 (20%)
Query: 1 MGISSLFPVQVAV--------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
+GI+ FPVQ AV + P RD+CI +PTGSGKTL+YA+PI+Q NR
Sbjct: 70 IGITHFFPVQSAVIPYMLDCYFTSKHRPLCRPRDICICAPTGSGKTLAYAVPIIQLFLNR 129
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
R +RAL+++P RDLA+QV F+ + + VG+ G S + E ++I
Sbjct: 130 VHRFIRALIIVPVRDLAVQVYKTFSQLVNGTDIQVGVLAGIKSFSKEQEDIINLTNESYS 189
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+ VDI++ATPGRL+DH+ T GF++E L LV+DE DR++ E Q W
Sbjct: 190 V-------------KVDIVIATPGRLVDHLYNTPGFSMERLRILVIDEADRVIVEEKQNW 236
Query: 173 LPTVLQL----TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR-----LV 223
T+ + T S N+N +S+ S S + I G Y R L
Sbjct: 237 YHTLEDVLYYYTSSTNQNSWSNVSVRKRS-----RPIPTVGYH-------YDRSVDITLQ 284
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY--------------------------K 257
K+++SATLT DP L Q +L+ P+ T+ R+ K
Sbjct: 285 KILVSATLTHDPEPLKQFNLYFPILFTSNRIRHDENHIDAVPHDHKNAENNSSEIKKQEK 344
Query: 258 LPERLESYKLICESK-------------------------LKPLYLVALLQSLGEEK--- 289
E E +I K KP V L L +K
Sbjct: 345 CDENREIPNVISHVKSSENHTTAGVGQFMVPESLEEFLVTAKPDIRVLFLVYLVRQKHKK 404
Query: 290 -CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
+ F ++V+ RL LL F IK K S R + L F G+ Q+LV +D
Sbjct: 405 RILCFANTVDCAKRLNMLLASFKG--IKSKFLSSHLHPDKRQRILNLFSVGQCQILVCTD 462
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+M RG+D+ V VV+YD P IK YIHR GRTARAG+ G + LL ++ FKK L+
Sbjct: 463 SMARGIDINDVECVVSYDVPPSIKIYIHRIGRTARAGKKGTAYNLLSTNQFYHFKKDLKL 522
Query: 409 A 409
A
Sbjct: 523 A 523
>gi|152013488|sp|A2QA23.1|DBP6_ASPNC RecName: Full=ATP-dependent RNA helicase dbp6
gi|134055529|emb|CAK37175.1| unnamed protein product [Aspergillus niger]
Length = 593
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 161/414 (38%), Positives = 219/414 (52%), Gaps = 49/414 (11%)
Query: 19 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78
GP DLCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++
Sbjct: 158 GPTNHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACEL 217
Query: 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
A GL V AVG +I DE E + G + E VDIL+ TPGRL
Sbjct: 218 CAAGSGLRVASAVGNVAIKDEQRESL------PGYVHRSE-------PNVDILICTPGRL 264
Query: 139 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
+DH+ T+GFTL++L +LV+DE DRLL E++Q W+ V+ S + P A
Sbjct: 265 VDHLRYTKGFTLKNLEWLVIDEADRLLNESFQEWVDVVMT----------SLDARKAPDA 314
Query: 199 FG-SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG----- 252
FG S + G+ K+ PR K+VLSAT+T+D KL L L +P + G
Sbjct: 315 FGFSGNFLSGLGLPIQSKE---PR--KVVLSATMTRDVTKLNSLRLANPKLVVIGSDAAA 369
Query: 253 -----------ETRYKLPERLESYKL-ICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 298
+ ++ LP LE + + + + KPLYL+ LL S E K +VFT S E
Sbjct: 370 TEDESGGVAPSDEQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKLETKILVFTKSSE 429
Query: 299 STHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
S RL LL L +I + S KTL A+R GKI V++++D +RG+D+
Sbjct: 430 SASRLARLLALLEPSLSDRIGTIIKSNKSSASRKTLTAYRRGKISVIIATDRASRGLDLR 489
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
+ +VVNYD PA I TY+HR GRTARAGQ G +TL+ E K F + K +
Sbjct: 490 SLTHVVNYDVPASITTYVHRVGRTARAGQKGSAWTLVAHREGKWFASQIAKGSD 543
>gi|296423635|ref|XP_002841359.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637596|emb|CAZ85550.1| unnamed protein product [Tuber melanosporum]
Length = 627
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 212/415 (51%), Gaps = 85/415 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+ ++S FPVQ AV + P D+CI++ TGSGKTL+Y LPIVQ LS R V LRA+
Sbjct: 245 LSMTSAFPVQSAVIPLLLSPD--SGDICISAATGSGKTLAYVLPIVQALSTRVVTRLRAV 302
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
+V+PTR+L QV V +++ L +G AVG ++ E ++L+ E G
Sbjct: 303 IVVPTRELVSQVHSVACSLSTGNSLKIGTAVGSKALPLEQAQLVG----EGG-------- 350
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL-QL 179
S +D+LV TPGRL++HI T+GFTL+ L +LV+DE DRLL +++Q W+ T++ ++
Sbjct: 351 --NGGSKIDVLVCTPGRLVEHIKTTKGFTLKFLRWLVIDEADRLLAQSFQEWVSTLIGEI 408
Query: 180 TRSD---NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY-PRLVKMVLSATLTQDP 235
R D E +F+ L G + KP R+ K+VLSAT+T+D
Sbjct: 409 ERVDVSAQEEKFNSVLEDL-----------------GIRLKPPGSRVRKVVLSATMTRDA 451
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
KL+ L L P + T I+FTS
Sbjct: 452 GKLSDLKLRKPSMIAT---------------------------------------IIFTS 472
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT--------LKAFREGKIQVLVSS 347
S + RL TLL+ F + + + S+T + AF +G+ +LV S
Sbjct: 473 SNSTATRLSTLLSTFSSHPAAPPPATSWITKCITSETPRKQRARYIHAFTKGEAGILVCS 532
Query: 348 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
D + RG+D+E V V+NY+ PA ++ Y+HR GRTARAG+ G +L+ + E F
Sbjct: 533 DLVARGLDIENVAIVINYEVPASVRGYVHRVGRTARAGRNGVAVSLVGEKEAGWF 587
>gi|294949064|ref|XP_002786034.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
gi|239900142|gb|EER17830.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
Length = 559
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 158/452 (34%), Positives = 220/452 (48%), Gaps = 85/452 (18%)
Query: 1 MGISSLFPVQVAVWQETIG------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 54
MGIS LFPVQ V +G ++ DLC+ PTG GKTL Y LPI Q LS+R
Sbjct: 91 MGISRLFPVQATVLPIVLGRVRTPVGSRYDCDLCVAVPTGQGKTLGYLLPIFQLLSHRKY 150
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGI 113
+ LRALV+ PTRDLALQVK+V V VGQ A +E E G
Sbjct: 151 QTLRALVLAPTRDLALQVKEVADHFTGGKDNFKVDCVVGQYH-AQTFAE-------EDGS 202
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
P D+LVATP R +D I R ++ + ++V+DE DRLL + +A +
Sbjct: 203 SAGP-----------DVLVATPSRALDLITGER-VPVDGIRWMVLDEADRLLNSSREATV 250
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
V R +AS PR +M+ SAT+T
Sbjct: 251 EVV---------RRVMEAS---------------------------PRCQRMLFSATMTS 274
Query: 234 DPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICES-KLKPLYLVALL-------QS 284
+P KLAQL L P FL + +T + PE L ++ + + KP LV++L S
Sbjct: 275 NPQKLAQLALSRPFFLLSTQTGAHATPENLRHRFVVARAEQKKPGVLVSILGEIYPPTAS 334
Query: 285 LGEEKCIVFTSSVESTHRL------CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ ++F SVE HRL C + N + IKI+E+S Q R + L+AFR
Sbjct: 335 EATSRTMIFCGSVEHAHRLTRLLQICVVGNENIKEGIKIREFSAALNQKQRVRLLEAFRT 394
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G+I VLV SD RG+D V++V+ YD P ++ YIHR GR RAG+ G T+L +
Sbjct: 395 GRIHVLVCSDVAARGLDFREVDHVLQYDVPNNVQGYIHRCGRAGRAGRQGCSSTILVGKQ 454
Query: 399 VKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 430
VK FK +L++ + ++ +E ++PV
Sbjct: 455 VKHFKDMLREEE-------AVTMDKLEQMKPV 479
>gi|213407706|ref|XP_002174624.1| ATP-dependent RNA helicase dbp6 [Schizosaccharomyces japonicus
yFS275]
gi|212002671|gb|EEB08331.1| ATP-dependent RNA helicase dbp6 [Schizosaccharomyces japonicus
yFS275]
Length = 570
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 218/432 (50%), Gaps = 70/432 (16%)
Query: 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 74
Q PG DLC+++ TGSGKTL+Y LPI++ L V LR VV+PT++L +QV
Sbjct: 127 QRAHAPG----DLCVSAATGSGKTLAYVLPIIECLRTCIVTRLRCAVVVPTKELVVQVAK 182
Query: 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134
F L V GQ S+A E S L P + I DI+V T
Sbjct: 183 SFEQYCSGTKLRVCALTGQRSLAFEQS-LFLSPNGKDYIA--------------DIMVTT 227
Query: 135 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL---------PTVLQ------- 178
PGR +DHI +T FTL+HL YLVVDE DRLL +++Q W+ P VLQ
Sbjct: 228 PGRFVDHIRSTPNFTLQHLRYLVVDEADRLLDQSFQGWVNAVMEELERPKVLQGIDMHGL 287
Query: 179 -----LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
L +D+ + + AST+LP+ + T+ K P L K+V SATLT+
Sbjct: 288 SGIERLPGADSNSGCNIASTYLPN----MPTL--------LPQKTAPCLQKLVFSATLTR 335
Query: 234 DPNKLAQLDLHHPLFLTTGETR--------------YKLPERLESYKLICESKLKPLYLV 279
+P K++ L L P L + + LP L+ + + ++ KPL L
Sbjct: 336 NPAKISALRLVRPRLLVVQDPSVSMEPDGDEEDTVLFSLPAALQEHHVGVTAE-KPLLLY 394
Query: 280 ALLQSLGEEKCIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
LL++ + + FT S ES +RL LL+ +++ ++G+ ++ R + L F
Sbjct: 395 HLLRTQQLQNTLCFTKSNESAARLYRLLELLDKGSSEPLRVGLFAGILTRADRRRILTQF 454
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
E +Q+LV SD M RG+D+ NV+NYD P+ + Y+HR GR ARAG+ G +TL+
Sbjct: 455 AESNLQLLVCSDLMARGVDLPSTENVINYDPPSGTRQYVHRIGRCARAGREGHAWTLVQD 514
Query: 397 DEVKRFKKLLQK 408
E F ++++
Sbjct: 515 HEGFHFSSIVRR 526
>gi|452002280|gb|EMD94738.1| hypothetical protein COCHEDRAFT_1048087, partial [Cochliobolus
heterostrophus C5]
Length = 604
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 148/498 (29%), Positives = 235/498 (47%), Gaps = 99/498 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
G + VQ A+ + PG + D+C+++ TGSGKTL+Y LPI++ L +RAV L A
Sbjct: 118 GFKNALAVQTALL-PMLHPGFDQHLGDICVSAKTGSGKTLAYLLPIIEALKDRAVPILSA 176
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR-----PK------ 108
++V+P+R L Q V + + VG A+G + A E +L+K PK
Sbjct: 177 IIVVPSRQLVNQALQVAEELCAGTRIKVGTALGNVAFATEQKQLVKMRAQYDPKRAQELN 236
Query: 109 -----------LEAGICYDPEDVLQ-----ELQSAVDILVATPGRLMDHINATRGFTLEH 152
+E G YD + + S VDIL+ TPGRL++HI T GF L +
Sbjct: 237 EKASQQYQTGLMERGGPYDDLKKMSLGHVPKYDSGVDILICTPGRLVEHIEHTTGFLLNN 296
Query: 153 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 212
+ +LV+DE D+LL + +Q W ++ + F +A + + +
Sbjct: 297 VRWLVIDEADQLLNQNFQGWASVLMDAVHGETRPEFMNARERMAKQVRDANSAWSVAL-- 354
Query: 213 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF------------LTTGETRYKLPE 260
P +++K+VLSAT+ +D +KL L L P L T + ++LP
Sbjct: 355 -----PQRQVIKVVLSATMEKDVSKLGTLKLRRPKLVVVQDASTELQPLETEDNVFELPS 409
Query: 261 RLESYKL-ICESKLKPLYLVALL------------------------------------- 282
RLE + + + + KPL+L+ +L
Sbjct: 410 RLEEFAVHVGDGANKPLHLLHVLLSFVFAEKHEDADSSSDSDSSDSSSDSSSDSDSDAGQ 469
Query: 283 ---QSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS----KTL 333
S+ ++ + ++FT S ES RL LL L K Y +++ + K L
Sbjct: 470 VSAASMSQQTGRVLIFTKSTESASRLSHLLR---ALMPGFKNYLQTMTRALTADASRKLL 526
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
K+F G I++L++SDA +RG+D+ + +V+NYD P I +Y+HR GRTARAG+ G+ +TL
Sbjct: 527 KSFSSGTIKILIASDAASRGLDIPDITHVINYDLPTSITSYVHRVGRTARAGKAGQAWTL 586
Query: 394 LHKDEVKRFKKLLQKADN 411
K E F K + K D+
Sbjct: 587 FSKTEAAWFLKQIAKGDS 604
>gi|167536143|ref|XP_001749744.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771892|gb|EDQ85553.1| predicted protein [Monosiga brevicollis MX1]
Length = 2519
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 212/415 (51%), Gaps = 73/415 (17%)
Query: 3 ISSLFPVQ-------VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
+ +LFP+Q +A W PG D C+ +PTGSGKTL Y LPI+ L+ R
Sbjct: 191 MKTLFPLQRAMVPRLIASWNAAGHPG----DFCVCAPTGSGKTLCYLLPILHLLAERVTP 246
Query: 56 CLRALVVLPTRDLALQV----KDVFAAIAPAVG---LSVGLAVGQSSIADEISELIKRPK 108
+RAL+VLPTR LALQV +D+ A G L V GQ+S++ E
Sbjct: 247 RIRALIVLPTRQLALQVVRVARDLLGASQLCAGREPLRVAALTGQTSLSQE--------- 297
Query: 109 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL--CYLVVDETDRLLR 166
+ +LQE ++DI+VATPGRL+DH++ T G + L C+ + LL
Sbjct: 298 ---------QKLLQE--QSIDIVVATPGRLVDHLHQT-GKEMGALGACFQPI-----LLT 340
Query: 167 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 226
++YQ+WL + + E+ SD + F + T RL +++
Sbjct: 341 QSYQSWLEALRKALYRGRES--SDPMNMTLTRFHAEGT----------------RLQQLL 382
Query: 227 LSATLTQDPNKLAQLDLHHPLFLTTGET-------RYKLPERLESYKLICESKLKPLYLV 279
SATLT+DP KL L L P + + +P ++ Y + C + +PL L+
Sbjct: 383 FSATLTRDPEKLEPLRLAFPTMVIASSAHQDDANGKSTIPRSIDEYTVSCTATERPLVLL 442
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
+LL ++ ++F S++ + R+ LL +F EL + E S Q Q ++ LK F G
Sbjct: 443 SLLIGFQMQRVLIFVSALNTAKRVTALLQYFDEL--SVAEVSSSQSQQENTRALKQFAAG 500
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
++ VLV SD M RG+D++ V V++YD PA+ KTYIHR GR RAG G +TL+
Sbjct: 501 ELSVLVCSDNMARGIDIKNVETVISYDAPAFPKTYIHRVGRVGRAGAHGEAYTLV 555
>gi|294901652|ref|XP_002777458.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
gi|239885094|gb|EER09274.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
Length = 559
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 159/452 (35%), Positives = 218/452 (48%), Gaps = 85/452 (18%)
Query: 1 MGISSLFPVQVAVWQETIG------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 54
MGIS LFPVQ V +G ++ DLC+ PTG GKTL Y LPI Q LS+R
Sbjct: 91 MGISRLFPVQATVLPIVLGRVRTPVGSRYDCDLCVAVPTGQGKTLGYLLPIFQLLSHRKY 150
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGI 113
+ LRALV+ PTRDLALQVK+V V VGQ A +E E G
Sbjct: 151 QTLRALVLAPTRDLALQVKEVADHFTGGKDSFRVDCVVGQYH-AQTFAE-------EDGS 202
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
P D+LVATP R +D I R ++ + ++V+DE DRLL + +A +
Sbjct: 203 SAGP-----------DVLVATPSRALDLITGER-VPVDGIRWMVLDEADRLLNSSREATV 250
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
V R +AS PR +M+ SAT+T
Sbjct: 251 EVV---------RRVMEAS---------------------------PRCQRMLFSATMTS 274
Query: 234 DPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICES-KLKPLYLVALL-------QS 284
+P KLAQL L P FL +T + PE L ++ + + KP LV++L S
Sbjct: 275 NPQKLAQLALSRPFFLLGTQTGAHATPENLRHRFVVARAEQKKPGVLVSILGEIYPPTAS 334
Query: 285 LGEEKCIVFTSSVESTHRLCTLL------NHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ ++F SVE HRL LL N + IKI+E+S Q R + L+AFR
Sbjct: 335 EATSRTMIFCGSVEHAHRLARLLQIYVVGNENIKEGIKIREFSAALNQKQRVRLLEAFRT 394
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G+I VLV SD RG+D V++V+ YD P ++ YIHR GR RAG+ G T+L +
Sbjct: 395 GRIHVLVCSDVAARGLDFREVDHVLQYDVPNNVQGYIHRCGRAGRAGREGCSSTILVGKQ 454
Query: 399 VKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 430
VK FK +L++ ++ +E ++PV
Sbjct: 455 VKHFKDMLREE-------KAVTMDKLEQMKPV 479
>gi|452825309|gb|EME32306.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 568
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 225/461 (48%), Gaps = 75/461 (16%)
Query: 1 MGISSLFPVQVAV--WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-L 57
+ IS LF Q V + ++ F D+ + +PTG+GKTL YA+ I+ L +R+ R L
Sbjct: 32 LNISKLFRFQWTVIKYLLSLDRSNFPGDVIVQAPTGTGKTLCYAISILTALKSRSSRPRL 91
Query: 58 RALVVLPTR----------------DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 101
R LV++PTR +L Q+ VF A+ L V G +S++ E +
Sbjct: 92 RGLVIVPTRYLIFAYFGFYDKFLIRELVNQLYSVFLALIGDDDLKVLGLSGDTSLSSERT 151
Query: 102 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 161
+ I+ +L CY P VDIL++TP RL++HI+ GF + +LV+DET
Sbjct: 152 KAIESIQLLEDECYSP-------VWKVDILISTPSRLVEHIHQRVGFEPTTIEFLVLDET 204
Query: 162 DRLLREAYQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 220
DRLL W+ T+L+ ++RS + + + +L G K IR
Sbjct: 205 DRLLSGQSLDWIETILRHISRSSDVTSSENRNLYLTGELGLRKPIR-------------- 250
Query: 221 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTT-------------------GETRYKLPER 261
K++ SAT T KLA L L +P T + +Y LP
Sbjct: 251 ---KLLFSATQTSSIAKLANLSLVNPTLFTYKQDDAVRSILLGNSSSEKRSKQKYWLPFA 307
Query: 262 LESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF------ 310
LE + L+C+S ++ L YL L SL E IVF SS S HRL L+ +
Sbjct: 308 LEEFVLLCKSPVEKLVSLVWYLKHLDSSLSEAGVIVFASSKISAHRLFRFLSLYFSAGYI 367
Query: 311 -GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 369
I I E S R ++ F K+QV+VSSD TRGMD+E + +V+++D P
Sbjct: 368 ESNTAIHIAELSSNLSNRQRRNVVRDFSLHKLQVVVSSDVATRGMDIENIGHVISFDVPV 427
Query: 370 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 410
++KTY+HR GRTARAG G T+L + + F+KLL+K D
Sbjct: 428 HVKTYLHRVGRTARAGHKGTGCTILMEHQAHHFRKLLRKID 468
>gi|451845363|gb|EMD58676.1| hypothetical protein COCSADRAFT_265142 [Cochliobolus sativus
ND90Pr]
Length = 706
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 226/472 (47%), Gaps = 96/472 (20%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+C+++ TGSGKTL+Y LPI++ L +R V L A++V+P+R L Q V + +
Sbjct: 200 DICVSAKTGSGKTLAYLLPIIEALKDRTVPILSAIIVVPSRQLVNQALQVAEELCAGTRI 259
Query: 86 SVGLAVGQSSIADEISELIKR-----PK-----------------LEAGICYD-----PE 118
VG A+G + A E +L+K PK +E+G Y+ P
Sbjct: 260 KVGTALGNVAFATEQKQLVKMRSQYDPKRAQELNEQASQQHQTGLMESGGLYEDLRNMPL 319
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ + S VDIL+ TPGRL++HI T GF L +L +LV+DE D+LL + +Q W ++
Sbjct: 320 GHVPKYDSGVDILICTPGRLVEHIEHTTGFLLNNLRWLVIDEADQLLNQNFQGWASVLMN 379
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
+ F +A + + + P ++ K+VLSAT+ +D +KL
Sbjct: 380 AIHCETPCEFMNARERMAKQLRDANSAWSVAL-------PQRQVTKVVLSATMEKDLSKL 432
Query: 239 AQLDLHHPLF------------LTTGETRYKLPERLESYKL-ICESKLKPLYLVALL--- 282
L L P L T + ++LP +LE + + + + KPL+L+ +L
Sbjct: 433 GTLKLRRPKLVVVQDASTEPQPLETEDNVFELPSKLEEFAVHVGDGANKPLHLLYVLLNF 492
Query: 283 -------------------------------------QSLGEE--KCIVFTSSVESTHRL 303
S+ ++ + ++FT S ES RL
Sbjct: 493 VFTEKHEGADSSSDSDLSDSSSDSSPDDDSDAGQVSQASMSQQTGRVLIFTKSTESASRL 552
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRS----KTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
LL+ L K Y +++ + K LK+F G +++L++SDA +RG+D+ +
Sbjct: 553 SHLLS---ALMPGFKNYLKTMTRALTADASRKLLKSFSSGAVKILIASDAASRGLDIPDI 609
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
+V+NYD P I +Y+HR GRTARAG+ G+ +TL K E F K + K D+
Sbjct: 610 THVINYDLPTSITSYVHRVGRTARAGKAGQAWTLFSKTEAAWFLKQIAKGDS 661
>gi|149235381|ref|XP_001523569.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013489|sp|A5E726.1|DBP6_LODEL RecName: Full=ATP-dependent RNA helicase DBP6
gi|146452978|gb|EDK47234.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 663
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 218/432 (50%), Gaps = 77/432 (17%)
Query: 1 MGISSLFPVQVAVWQE--------TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
+G + F VQV V + + P F D+ +N+ TGSGKTL+Y++PI+++L +R
Sbjct: 240 LGFENAFAVQVGVLSKLLPEIQANKLRPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDR 298
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V +RA+V++PT+ L QV+ +A L++ SI +E LI
Sbjct: 299 VVPRVRAIVLVPTKPLINQVRATMLQLALGTNLNIVSLKNDISIREESERLI-------- 350
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+ D++++TPGRL++H+ A +L L YLVVDE DRLL +++Q W
Sbjct: 351 ------------ELVPDVVISTPGRLVEHL-AMDSISLSSLRYLVVDEADRLLNQSFQNW 397
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
++ ++ + + SLK + K + SATLT
Sbjct: 398 SQILI--------SKIHLQQVYDVANVWSLK------------------VQKFIFSATLT 431
Query: 233 QDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQ 283
D KLA LD H+P L +++ + +P L YKL + +S LKPL L L
Sbjct: 432 TDAGKLASLDFHNPRLLIVNDSQRLVNELFSVPAMLSEYKLNFGVAKSSLKPLILAKFL- 490
Query: 284 SLGEEK---CIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGL-----QRQSVRSKTLK 334
+ +EK +VFT S ES+ RLCTLL F + ++ K G R S+RSK LK
Sbjct: 491 -IAQEKLSDVLVFTKSNESSIRLCTLLQAIFDRICLQEKVKVGFMNLTNNRTSLRSKILK 549
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F KI +LV++D + RG+DV + +VVNYD + Y+HR GRTARA Q G + L+
Sbjct: 550 DFTSQKINILVATDLIARGLDVTSIKDVVNYDLLNSSREYVHRVGRTARANQAGNAYNLV 609
Query: 395 H-KDEVKRFKKL 405
K E K FK +
Sbjct: 610 FGKGEEKWFKTI 621
>gi|406601292|emb|CCH47065.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 642
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 227/430 (52%), Gaps = 72/430 (16%)
Query: 1 MGISSLFPVQVAVW-------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 53
+G + F Q+ + P + DL +N+ TGSGKTL+Y +PI+Q+L NR
Sbjct: 221 LGFDNAFATQIKTLGLLLPEINNKLNPNSIKGDLLVNASTGSGKTLAYTIPIIQSLQNRI 280
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS--SIADEISELIKRPKLEA 111
V LR ++++PT+ L QV +I+ + L++ + +G+S ++ DE +LIK
Sbjct: 281 VPRLRCIILVPTKPLINQVYKTMDSISKGIDLNI-VTLGKSDLNLQDEHLKLIK------ 333
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+++TPGRL+DH+N + L++L + V+DE DRLL +++Q
Sbjct: 334 --------------NVPDIIISTPGRLVDHLNL-KSIDLKNLQWCVIDEADRLLNQSFQD 378
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
W + + +T+ ++ N+ ++ S FK P L+KM+ SATL
Sbjct: 379 W--SNVLITKLNDVNKGNNISKI-------------------FK----PNLIKMIFSATL 413
Query: 232 TQDPNKLAQLDLHHP-LFLTTGETR-------YKLPERLESYKLICESKL---KPLYLVA 280
T D KL+ L+ H+P L + E + LP +L + + S KPLYL+
Sbjct: 414 TTDSGKLSNLNFHNPRLIIVNNEESILQNDKIFTLPTQLSEHTIKLSSNSSSHKPLYLLK 473
Query: 281 LLQSLG-EEKCIVFTSSVESTHRLCTLLNH-FGELRIK--IKEYSGLQRQSVRSKTLKAF 336
L + L ++FT S EST RL LL+ +L I I + Q +S +SK LK F
Sbjct: 474 LFEWLKYPHNVLIFTKSNESTLRLSRLLSILVSKLSIPLIISNINSSQSRSEKSKLLKQF 533
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT-LLH 395
EG I +L+S+D ++RG+D+ + +V+NYD P + Y+HR GRTARA G + L+
Sbjct: 534 SEGSIHILISTDLISRGIDILTIQHVINYDLPNSSREYVHRVGRTARANNKGDAYNFLIG 593
Query: 396 KDEVKRFKKL 405
K EVK + K+
Sbjct: 594 KGEVKFWNKI 603
>gi|336467903|gb|EGO56066.1| hypothetical protein NEUTE1DRAFT_83030 [Neurospora tetrasperma FGSC
2508]
gi|350289862|gb|EGZ71087.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 684
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 230/449 (51%), Gaps = 62/449 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G F VQ A + + D+ + +PTGSGKTL+Y LP+VQ ++ LR ++
Sbjct: 236 GFKDAFAVQTAALPLLLPNPDLQGDVVVAAPTGSGKTLAYVLPMVQDIALSQTTKLRGVI 295
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLS-------VGLAVGQSSIADEISELIKRPKLEAGIC 114
VLPTRDL QV+ A A A S VG A+G +E +
Sbjct: 296 VLPTRDLVQQVQQACEACAAAFAGSSGGKRVKVGTAMGNRPFKEEQGRPL---------- 345
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
P V+Q + VDIL+ TPGRL++HI T+GFTL+++ +LVVDE D+LL + +Q WL
Sbjct: 346 --PYHVIQHVPK-VDILICTPGRLVEHITKTKGFTLDYVRWLVVDEADKLLAQDFQQWLD 402
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
V NE L + + +K PR K++LSAT+T+D
Sbjct: 403 VV-------NEK---------------LAVSKPGARDFAANNKTGPR--KVILSATMTRD 438
Query: 235 PNKLAQLDLHHP-LFLTTGETRYKL--PERLESYKL-ICESKLKPLYLVALLQS-----L 285
L L L P L + G L P L+ Y + I E LKPLYLV LLQS
Sbjct: 439 ITLLNGLKLSRPKLVVLEGAKAGDLAIPATLKEYAIKITEPSLKPLYLVDLLQSKYMAAA 498
Query: 286 GEEKCIVFTSSVESTHRLCTLLNH-----FGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
++FT+S +S RL LL+ F L I + + SVR +TL+AF GK
Sbjct: 499 FPTTALIFTASNQSALRLSRLLSLLLPPSFAPL---IGTLTSSTKTSVRLRTLRAFTSGK 555
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+++LV+SD ++RG+D+ +++V+NYD P +Y+HR GRTARAG+ G+ +TL+ E +
Sbjct: 556 LRILVASDLVSRGIDLSNLDHVINYDLPLSETSYVHRVGRTARAGREGKAWTLVEFAEAR 615
Query: 401 RF-KKLLQKADNDSCPIHSIPSSLIESLR 428
RF ++ + + C + +E +R
Sbjct: 616 RFWREFVGEGSGAVCNVKRAEGRTVERVR 644
>gi|255726860|ref|XP_002548356.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134280|gb|EER33835.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 608
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 144/430 (33%), Positives = 215/430 (50%), Gaps = 73/430 (16%)
Query: 1 MGISSLFPVQVAVWQETIG--------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
MG SS F VQV+V I P F D+ +N+ TGSGKTL+Y++PI+++L R
Sbjct: 189 MGFSSAFAVQVSVLDMMIPEIKAHKLMPDPF-GDILVNASTGSGKTLAYSIPIIESLHKR 247
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V +RA++++PT+ L QVK F ++ L V SI DE +L+K
Sbjct: 248 VVPRVRAIILVPTKPLINQVKATFLQLSSGTNLQVMALKNDISINDE-KQLLK------- 299
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
S DI+V+TPGRL++H+ +L L YLV+DE DRLL +++Q W
Sbjct: 300 ------------NSIPDIIVSTPGRLVEHL-IGDSISLSSLQYLVIDEADRLLNQSFQNW 346
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+L +R + A ++ R V+ KMV SATLT
Sbjct: 347 SQILL--------DRMNSAI--------NISEEWRLPVQ------------KMVFSATLT 378
Query: 233 QDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQ 283
D KL+ L P + +++ + +P L YK+ + ++ LKPL L L
Sbjct: 379 TDAGKLSSLKFFKPRLIIVNDSKQLVNEIFTVPNTLSEYKIHLGVAKNSLKPLILARFLI 438
Query: 284 SLGE-EKCIVFTSSVESTHRLCTLLN-HFGELRIKIKE---YSGLQRQSVRSKTLKAFRE 338
S G+ ++FT S ES+ RL LL F +L I I S R +VR+K LK F
Sbjct: 439 SKGKLSNVLIFTKSNESSIRLAELLTILFKKLSIDINVSFINSTNNRTAVRTKILKQFSS 498
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD 397
I +L+++D + RG+D+ + +V+NYD P + Y+HR GRTARA Q+G ++ K
Sbjct: 499 QGINILIATDLIARGIDLTSITDVINYDLPNSSREYVHRVGRTARANQVGYAYSFCFGKG 558
Query: 398 EVKRFKKLLQ 407
E F L++
Sbjct: 559 ENSWFTTLIK 568
>gi|367009624|ref|XP_003679313.1| hypothetical protein TDEL_0A07700 [Torulaspora delbrueckii]
gi|359746970|emb|CCE90102.1| hypothetical protein TDEL_0A07700 [Torulaspora delbrueckii]
Length = 627
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 210/414 (50%), Gaps = 79/414 (19%)
Query: 7 FPVQVAVWQE----------TIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAV 54
FP+Q A+ + T L R D+ +N+ TGSGKTL+Y++PIVQ LS R V
Sbjct: 194 FPIQTALLENLLPILNFSLSTTKKHLTRRVGDVLVNASTGSGKTLAYSIPIVQLLSKRTV 253
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LRAL+++PT+ L QV D +A GL + ++ ++S+ +E +
Sbjct: 254 NRLRALIIVPTKLLINQVYDTINKLAQGTGLIISISKLENSLKEEHKKF----------- 302
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+QS D+L+ TPGRL+DH+ + ++++L L++DE D LL +++Q W P
Sbjct: 303 ---------MQSEPDVLIITPGRLVDHL-QMKSISMKNLQMLILDEADHLLNQSFQNWCP 352
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
+L S + K +R G ++KMV SATLT +
Sbjct: 353 RLL-------------------SQITAEKHDQRPG-----------NVIKMVFSATLTTN 382
Query: 235 PNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKC 290
KL L+L++P LF+ Y LPE+L+ Y + +S KPL L+ LL + K
Sbjct: 383 TEKLHGLNLNNPRLFIMDSVKLYSLPEKLQEYIVNIPTSKSLYKPLILLHLLDHMKSAKV 442
Query: 291 IVFTSSVESTHRLCTLLN----------HFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+VF S E++ RL LLN H E I G ++ V +K A E K
Sbjct: 443 LVFVKSNEASLRLACLLNILIDQNLAQRHIVET-INSNNSKGENKRLV-NKFASAECESK 500
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
++L+++D M+RG+D+ +++V+NYD P + Y+HR GRTARA G + LL
Sbjct: 501 NRILITTDLMSRGIDINDISDVINYDLPISSQQYVHRCGRTARAQSKGNAYNLL 554
>gi|330916967|ref|XP_003297627.1| hypothetical protein PTT_08099 [Pyrenophora teres f. teres 0-1]
gi|311329592|gb|EFQ94284.1| hypothetical protein PTT_08099 [Pyrenophora teres f. teres 0-1]
Length = 704
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 233/494 (47%), Gaps = 110/494 (22%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63
++L P+ A +++ +G D+C+++ TGSGKTL+Y LPI++ L +R V L A+VV+
Sbjct: 189 TALLPMLRAGFEQHLG------DICVSAKTGSGKTLAYLLPIIEQLKDRTVPVLSAIVVV 242
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-RPKLE------------ 110
P+R L Q V + + VG A+G + A E +LIK RP+ +
Sbjct: 243 PSRQLVNQALQVAEELCAGTKIKVGTALGNVAFATEQKQLIKLRPQYDPRRARELNEKAS 302
Query: 111 ----------AGICYD----PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 156
G+ D P D + + S VDIL+ TPGRL++HI T GF L + +L
Sbjct: 303 RQYQTGSTKKGGLYEDLKSMPLDHVPQYDSNVDILICTPGRLVEHIENTTGFLLNAVRWL 362
Query: 157 VVDETDRLLREAYQAW-----------LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
V+DE D+LL + +Q W P L + + R DA++ A +
Sbjct: 363 VIDEADQLLNQNFQGWANVLMDALHGETPVDLMNAQERIQRREHDANSIWSVALPA---- 418
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETR--------- 255
RR +L K+VLSAT+ +D KL+ L L P L + +T
Sbjct: 419 RR-------------QLTKVVLSATIEKDVTKLSTLRLKRPELVIVQDDTTEVQPLDYED 465
Query: 256 --YKLPERLESYKL-ICESKLKPLYLVALL------------------------------ 282
++LP LE + + + + KPL+L+ +L
Sbjct: 466 DVFELPSTLEEFAVHVGDGSNKPLHLLYVLLNYVFPGSQTASVSSSDSSASDSSSDSDSD 525
Query: 283 ---QSLGEE--KCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAF 336
S+ ++ + ++F S ES RL LL+ + IK + K LK+F
Sbjct: 526 SGNTSVSQQTGRVLIFAKSTESASRLSHLLSVLMPNFKNHIKTMTRALTADASRKLLKSF 585
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
G I++L++SDA +RG+D+ +++V+NYD P I +Y+HR GRTARA + G +TL K
Sbjct: 586 SSGAIKILIASDAASRGLDIPDISHVINYDLPTSITSYVHRVGRTARADKPGEAWTLFTK 645
Query: 397 DEVKRFKKLLQKAD 410
E F K + K D
Sbjct: 646 TEAAWFLKQVAKGD 659
>gi|391327051|ref|XP_003738021.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Metaseiulus
occidentalis]
Length = 429
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/430 (31%), Positives = 209/430 (48%), Gaps = 38/430 (8%)
Query: 9 VQVAVWQETIGP-----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63
+Q V +E + P GL RD+C+ +PTGSGKTL+Y LP+++ L + +RA+++L
Sbjct: 1 MQKQVIRELLDPRYDIMGLPPRDICVAAPTGSGKTLAYVLPLIKLLKGLFEKAIRAVILL 60
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PT +LA QV DVF A LS L G S ++E+ L++R
Sbjct: 61 PTSELAKQVYDVFTRYAAPFQLSAALLTGLKSHSEEVKTLLERG---------------- 104
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
VD+++ATP ++H+ T GF L + +LV+DE DR++ + V +
Sbjct: 105 -HPIVDVVIATPKTFLNHLRLTPGFNLRLVSHLVLDEADRMVDMVIHGLIREV------E 157
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
N D++ S G+ + R + D L K++ SATL DP KL ++L
Sbjct: 158 NAIYVDDSARCRCSEIGNFERSRPTAISCCTMDAHSLPLRKLLYSATLMSDPEKLRHVNL 217
Query: 244 HHP-LFLTTGE------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
+P +F E + LP+ LE K+ C+ ++PL + L + IVF S
Sbjct: 218 FYPRVFHAKAEHANRSDKAFALPDSLEERKIFCDIDVRPLLVWWLFVHQKMGRMIVFARS 277
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
E HRL ++ G K+ + S ++ R K L F EG +++++ ++RGMD+
Sbjct: 278 REECHRLRIVIEFMGS--CKVVDLSADMKKRQRQKALADFDEGLCDMIIATQVLSRGMDL 335
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP- 415
+ V +VV Y P + Y+H GRTARA + G+ LL E + K L+ N
Sbjct: 336 KSVEHVVLYHAPTSAEDYVHMVGRTARANKQGKSLVLLSPAENAKLSKTLKAISNSKVKE 395
Query: 416 IHSIPSSLIE 425
PSSL E
Sbjct: 396 FQWDPSSLRE 405
>gi|169598424|ref|XP_001792635.1| hypothetical protein SNOG_02017 [Phaeosphaeria nodorum SN15]
gi|111069109|gb|EAT90229.1| hypothetical protein SNOG_02017 [Phaeosphaeria nodorum SN15]
Length = 648
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 144/462 (31%), Positives = 222/462 (48%), Gaps = 92/462 (19%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL---ALQV-KDVFAAIAP 81
D+C+++ TGSGKTL+Y LPI++ L +RAV L A+VV+P+R L ALQV +D+ A
Sbjct: 198 DICVSAKTGSGKTLAYLLPIIEALKDRAVPTLSAIVVVPSRQLVNQALQVAEDLCAGTKI 257
Query: 82 AVGLSVG--------------------LAVGQSSIADEISELIKRPKLEAGICYD----- 116
VG ++G A G + + S+ + +E G D
Sbjct: 258 KVGTALGNTAFPPDAEAAGQVEGSVPPHAAGAKDLHERASQQFRTGFVEKGGILDDLMNM 317
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
P+D + + S VDIL+ TPGRL++HI T GF L + +LV+DE D+LL + +Q W +
Sbjct: 318 PQDHIPQYDSGVDILICTPGRLVEHIEHTTGFLLNSVRWLVIDEADQLLNQNFQGWASVL 377
Query: 177 LQLTRSDNENRFSDASTFL-------PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
+ + F +A L S + ++ RR +L K+VLSA
Sbjct: 378 MDALHGETPVDFMNAQERLLKRERDANSMWSAILPARR-------------QLTKIVLSA 424
Query: 230 TLTQDPNKLAQLDLHHPLF------------LTTGETRYKLPERLESYKL-ICESKLKPL 276
T+ +D KL L L P L + ++LP L+ + + + + KPL
Sbjct: 425 TMEKDLTKLGTLRLKRPKLVVVQDEATEVQPLDHEDNNFELPSTLDEFSVHVADGSNKPL 484
Query: 277 YLVALLQSL-------GEE---------------KCIVFTSSVESTHRLCTLLNHFG-EL 313
+L+ +L + GE + +VFT S E+ RL LL
Sbjct: 485 HLLYVLLNYVFTGIETGENNEDEDSETGVAEHPSRVLVFTKSTENASRLSHLLATLAPAF 544
Query: 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
+ +K + K LK+F G+I++L++SDA +RG+D+ + +V+NYD P I +
Sbjct: 545 KNHLKTMTRALTAEASRKLLKSFGTGEIKILIASDAASRGLDIPDITHVINYDMPTSITS 604
Query: 374 YIHRAGRTARA----GQLGRCFTLLHKDEVKRFKKLLQKADN 411
Y+HR GRTARA G+ GRC K E F K + K D+
Sbjct: 605 YVHRVGRTARAGKSGGKHGRCSP---KTEAAWFIKQITKGDS 643
>gi|401840382|gb|EJT43223.1| DBP6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 629
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 225/473 (47%), Gaps = 94/473 (19%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D +N+ TGSGKTL+Y++P+VQTLS
Sbjct: 195 TNAFPIQ-SIILDSILPILNFTLNVSKRYFTRRIGDTLVNAATGSGKTLAYSIPVVQTLS 253
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R + LR L+V+PT+ L QV + + L V +A ++S+ DE + + LE
Sbjct: 254 RRKINRLRCLIVVPTKLLINQVHTTLTKLTQGMSLIVSIAKLENSLKDEHKKFL---NLE 310
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W P ++ ++D + F ++KM+ SAT
Sbjct: 353 GWCPKLVFHLKTDKLDTFPG------------------------------NVIKMIFSAT 382
Query: 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSL- 285
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ +
Sbjct: 383 LTTNTEKLNDLNLYKPKLFLKQTDKLYQLPSKLREFNINVPTAKSIYKPLILLYSIDQFI 442
Query: 286 ----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 328
K ++F S ES+ RL LL E R + + LQ QS
Sbjct: 443 AHLSDASKILIFVKSNESSIRLTKLLQLISESRSQSNIFRNLQNLEMVINSVNSNHPQSE 502
Query: 329 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
K + F + I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSNRSKSASINILITTDVMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 385 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
+ G + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NETGSAYNLLVGRGERTFFDDLNKDLDRDGKSVAPLELDFTLLESDSELYHSS 615
>gi|146416595|ref|XP_001484267.1| hypothetical protein PGUG_03648 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/434 (35%), Positives = 217/434 (50%), Gaps = 80/434 (18%)
Query: 2 GISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 53
G SS F VQV+V + + I P + DL +N+ TGSGKTL YA+PI+++L NR
Sbjct: 210 GFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRI 268
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V +RA+V++PT+ L QVK FA ++ LSV SI DE
Sbjct: 269 VPRVRAIVLVPTKPLISQVKATFAMLSKNTNLSVVSLRSDISINDEA------------- 315
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAW 172
Q LQ DI+V+TPGRL++H+ T G L+ L YLV+DE DRLL +++Q W
Sbjct: 316 --------QRLQVVPDIIVSTPGRLVEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNW 365
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
T+ ++R D+ T+ PS + K+V SATLT
Sbjct: 366 CETL--MSRIDSNPILELDQTWRPS------------------------VQKLVFSATLT 399
Query: 233 QDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQ 283
D +L+ L L P + + + +P L+ YKL S KPL L L
Sbjct: 400 TDAGRLSMLKLQRPRLIIVNDRHELVNELFTVPATLQEYKLSLGSARSSAKPLVLAKFLM 459
Query: 284 SLGEEKCI---VFTSSVESTHRLCTLLNH----FGELRIKIKEYSGLQR-QSVRSKTLKA 335
S E+K + VF S E++ RLC LL FG L + + + S R+K LK
Sbjct: 460 S--EQKLVNTLVFAKSNEASLRLCRLLQLLFRVFG-LDVTVSYLNSTNNAASTRAKILKD 516
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-L 394
F + +LV +D + RG+D+ + NV+NYD P + Y+HR GRTARA Q G +T+
Sbjct: 517 FANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVHRVGRTARANQDGEAYTMCF 576
Query: 395 HKDEVKRFKKLLQK 408
K E K F +L+++
Sbjct: 577 GKGETKWFTQLVRE 590
>gi|294657476|ref|XP_459782.2| DEHA2E10912p [Debaryomyces hansenii CBS767]
gi|218512021|sp|Q6BPT8.2|DBP6_DEBHA RecName: Full=ATP-dependent RNA helicase DBP6
gi|199432720|emb|CAG88021.2| DEHA2E10912p [Debaryomyces hansenii CBS767]
Length = 576
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/432 (33%), Positives = 217/432 (50%), Gaps = 73/432 (16%)
Query: 1 MGISSLFPVQVAVW--------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
MG S F VQ++V + + P + DL +N+ TGSGKTL+Y++PI+++L
Sbjct: 148 MGFESAFSVQISVLNLMLKDIERNRLQPDM-RGDLLVNASTGSGKTLAYSIPIIESLQTV 206
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V +RA++++PT+ L QVK ++ LS+ S+ +++S IK E G
Sbjct: 207 KVPRVRAIILVPTKPLINQVKTTLNQLSKGTNLSI------VSLKNDLS--IK----EEG 254
Query: 113 ICYDPEDVLQELQSAV-DILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQ 170
I +LQ+ DI+V+TPGRL+DH+ T G+ +L++L YLV+DE DRLL +++Q
Sbjct: 255 I---------KLQTNEPDIIVSTPGRLVDHL--TNGYISLKNLQYLVIDEADRLLNQSFQ 303
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W L S I+ + +K + KM+ SAT
Sbjct: 304 NW-------------------CQILISKIDEFTNIKERNISNSWK----LNVQKMIFSAT 340
Query: 231 LTQDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVAL 281
LT D KL+ L H P + + LP L +KL +S LKPL L
Sbjct: 341 LTTDAGKLSLLKFHKPRLIIVNNKEQLVNEMFSLPATLNEFKLQFGSAKSSLKPLILSKF 400
Query: 282 LQSLGE-EKCIVFTSSVESTHRLCT----LLNHFGELRIKIKEYSGLQRQ-SVRSKTLKA 335
L S + ++FT S +++ RL ++N G I I + SVRSK LK
Sbjct: 401 LLSKNKLANVLIFTKSNDASLRLSRLLSLIMNKLGSETINIAYINSTNNTTSVRSKILKD 460
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-L 394
F + I +LV++D + RG+D+ + +V+NYD P + Y+HR GRTARA Q G +
Sbjct: 461 FSKQTINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQEGFAYNFCF 520
Query: 395 HKDEVKRFKKLL 406
K E K FKKL+
Sbjct: 521 GKGEAKWFKKLM 532
>gi|378754810|gb|EHY64839.1| hypothetical protein NERG_02242 [Nematocida sp. 1 ERTm2]
Length = 421
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 193/397 (48%), Gaps = 66/397 (16%)
Query: 31 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 90
S TG+GKTL+Y LPI+ TL + A+V+LPTR+L+ QV V A I +GL L
Sbjct: 50 SNTGTGKTLAYLLPIMHTLLQDD-KYFYAMVILPTRELSQQVHAVLADIGAEIGLRTSLL 108
Query: 91 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 150
+G + + + L RP I++ TPGR+ H+ T+G ++
Sbjct: 109 IGATDLLSQGKSLAARPH---------------------IVIGTPGRINHHLRNTKGISV 147
Query: 151 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 210
YLV+DE DRLL + + +L++ S TFL
Sbjct: 148 SSFKYLVLDECDRLLDNDFDGDINNILEM--------ISPKYTFL--------------- 184
Query: 211 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 270
SATLT+ N + +++PL + +PE + +
Sbjct: 185 ----------------FSATLTKRVNAFKEKRMNNPLLYNVQKDE-GIPENILQQYIYLP 227
Query: 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS 330
K K +YL +++ +LG KCIVF + + R+ +L GE I G + Q +R+
Sbjct: 228 QKYKEMYLYSIVHNLGSRKCIVFVKTCITAERIERILRFLGESVCSIH---GNKTQDIRT 284
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
+T++ FR GK +L+S+D + RGMD++G+ ++NYD P K YIHR GRT RAG++G
Sbjct: 285 ETIEMFRRGKHSILISTDVVARGMDMDGIKVIINYDMPDGHKEYIHRIGRTGRAGEVGSS 344
Query: 391 FTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
TL+ + +V F+KL K N +S+ S LI SL
Sbjct: 345 ITLVTQYDVDDFRKLEVKL-NKKMDEYSVSSELIYSL 380
>gi|223590192|sp|A5DK47.2|DBP6_PICGU RecName: Full=ATP-dependent RNA helicase DBP6
gi|190347303|gb|EDK39550.2| hypothetical protein PGUG_03648 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 220/434 (50%), Gaps = 80/434 (18%)
Query: 2 GISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 53
G SS F VQV+V + + I P + DL +N+ TGSGKTL YA+PI+++L NR
Sbjct: 210 GFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRI 268
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V +RA+V++PT+ L QVK FA ++ LSV SI DE
Sbjct: 269 VPRVRAIVLVPTKPLISQVKATFAMLSKNTNLSVVSLRSDISINDEA------------- 315
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAW 172
Q LQ DI+V+TPGRL++H+ T G L+ L YLV+DE DRLL +++Q W
Sbjct: 316 --------QRLQVVPDIIVSTPGRLVEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNW 365
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
T+ ++R D+ N S+ +T R P + K+V SATLT
Sbjct: 366 CETL--MSRIDS-NPISELD----------QTWR-------------PSVQKLVFSATLT 399
Query: 233 QDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQ 283
D +L+ L L P + + + +P L+ YKL S KPL L L
Sbjct: 400 TDAGRLSMLKLQRPRLIIVNDRHELVNELFTVPATLQEYKLSLGSARSSAKPLVLAKFLM 459
Query: 284 SLGEEKCI---VFTSSVESTHRLCTLLNH----FGELRIKIKEYSGLQR-QSVRSKTLKA 335
S E+K + VF S E++ RLC LL FG L + + + S R+K LK
Sbjct: 460 S--EQKLVNTLVFAKSNEASLRLCRLLQLLFRVFG-LDVTVSYLNSTNNAASTRAKILKD 516
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-L 394
F + +LV +D + RG+D+ + NV+NYD P + Y+HR GRTARA Q G +T+
Sbjct: 517 FANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVHRVGRTARANQDGEAYTMCF 576
Query: 395 HKDEVKRFKKLLQK 408
K E K F +L+++
Sbjct: 577 GKGETKWFTQLVRE 590
>gi|345563939|gb|EGX46922.1| hypothetical protein AOL_s00097g348 [Arthrobotrys oligospora ATCC
24927]
Length = 668
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 206/452 (45%), Gaps = 82/452 (18%)
Query: 1 MGISSLFPVQVAVW-----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
+G FPVQ A+ + P DL +++ TGSGKTLSY LPI+ +L NR V
Sbjct: 204 LGFKDTFPVQSALLPLLLPDNRLPPSTPRSDLLVSAATGSGKTLSYLLPILASLINRIVP 263
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
AL+++PT +LA QV+ ++A L + A+G S E +I G
Sbjct: 264 HTYALIIVPTHELATQVQRTAHSLAAGTSLKISTAIGTRSFEVEKDHIIANDIGSTG--- 320
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
DIL+ATPGRL++HI FTL HL +LVVDE DRLL +++Q W+
Sbjct: 321 ------------ADILIATPGRLVEHIRNNPQFTLRHLQWLVVDEADRLLSQSFQDWVEV 368
Query: 176 V---LQ--LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
V LQ +R D + F S L + + T+R K++LSAT
Sbjct: 369 VGDELQKPFSREDEQGGFDITSMGLRTPKRAADTVR-----------------KVILSAT 411
Query: 231 LTQDPNKLAQLDLHHPLFL----------------TTGETR----------YKLPERLES 264
+T+D +LA L L P + GE + LP LE
Sbjct: 412 MTRDVGRLAGLKLRRPQLIAVDDIGGQEMAIDGSDNDGEDQETADKGLRELNSLPSTLEE 471
Query: 265 -YKLICESKLKPLYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLN-----HFGELR--- 314
Y + KPL L LL S + +VFT S ES RL LL G+ R
Sbjct: 472 HYYPVSNPTQKPLILAKLLSDSQTKSGILVFTKSNESASRLARLLELLFAKKLGKKRKGS 531
Query: 315 ----IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
+I + +R+ S F+ I +L+S+D M RG+D+ V+NYD P
Sbjct: 532 SGKDWRIAVSTSDKRKKEISANTSKFKASTIDILISTDLMGRGVDLPNAQLVINYDSPRN 591
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
K YIHR GRTARAG G ++L+ E + +
Sbjct: 592 EKDYIHRVGRTARAGNKGITWSLVEDSEARWW 623
>gi|156847460|ref|XP_001646614.1| hypothetical protein Kpol_1028p29 [Vanderwaltozyma polyspora DSM
70294]
gi|160380624|sp|A7TFZ9.1|DBP6_VANPO RecName: Full=ATP-dependent RNA helicase DBP6
gi|156117293|gb|EDO18756.1| hypothetical protein Kpol_1028p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 637
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 140/417 (33%), Positives = 209/417 (50%), Gaps = 85/417 (20%)
Query: 7 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 53
FP+Q ++ ET+ P L F R D+ +N+ TGSGKTL+Y++PI+Q LS R
Sbjct: 199 FPIQ-SILLETLLPTLNFSYNITKKNFTRRVGDVLVNASTGSGKTLAYSIPILQILSKRT 257
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V LRALV++PT+ L QV + F +A L V ++ ++S+ +E +L
Sbjct: 258 VNKLRALVIVPTKLLINQVYETFNNLAQGTSLIVSISKLENSLKEENKKL---------- 307
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
LQ+ DIL+ TPGRL+DH+ + L +L +LV+DE DRLL +++Q W
Sbjct: 308 ----------LQNEPDILITTPGRLVDHLQSG-AVNLRNLKFLVLDEADRLLNQSFQNWC 356
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L ++D ++ +P +VKMV SATLT
Sbjct: 357 NELLNKLKTDKQDH-------MPG-----------------------NIVKMVFSATLTT 386
Query: 234 DPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEK 289
+ KL L ++P LF+ Y LP L+ Y L ++ KPL+L+ LL + K
Sbjct: 387 NTEKLHGLQFYNPKLFVMDSVKLYHLPRMLQEYNLHIPTAKTSYKPLFLLRLLSEINGSK 446
Query: 290 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA------------FR 337
+VF S ES+ RL +L + I+ K S SV S KA
Sbjct: 447 MLVFVKSNESSLRLASL----LSIMIEHKLGSQFDINSVNSNNTKAENRRIVNEFASNNN 502
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
K+QVL+++D M+RG+D+ + +V+NYD P + YIHR GRTARA G + +L
Sbjct: 503 TSKVQVLITTDVMSRGVDINDITDVLNYDVPISSQQYIHRCGRTARAQSKGTAYNML 559
>gi|387592705|gb|EIJ87729.1| hypothetical protein NEQG_02276 [Nematocida parisii ERTm3]
gi|387595334|gb|EIJ92959.1| hypothetical protein NEPG_02358 [Nematocida parisii ERTm1]
Length = 427
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 193/397 (48%), Gaps = 66/397 (16%)
Query: 31 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 90
S TG+GKTL+Y+LPI+ +L N R A+++LPTR+L+ QV V + I +GL L
Sbjct: 50 SNTGTGKTLAYSLPILHSLLNDD-RYFYAMIILPTRELSQQVHAVLSDIGAEIGLRTTLL 108
Query: 91 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 150
+G + + L RP I++ TPGR+ H+ T+G TL
Sbjct: 109 IGAVDLLVQGKSLAARPH---------------------IIIGTPGRIYHHLRNTKGITL 147
Query: 151 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 210
YLV+DE DRLL + + +L+L
Sbjct: 148 SSFKYLVLDECDRLLDNDFDGDINGILELIS----------------------------- 178
Query: 211 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 270
P+ + + SATLT+ N +++PL + +PE + +
Sbjct: 179 ---------PKYI-FLFSATLTKRVNAFKNKRMNNPLLYNVQKDE-GIPENISQQYVYLP 227
Query: 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS 330
K K +YL ++++SLG KCIVF + + ++ +L E I G + Q VR+
Sbjct: 228 QKYKEVYLYSIIRSLGSRKCIVFVKTCITAEKIERMLRSLDESVCSI---HGNKSQEVRT 284
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
+T++ FR G+ VL+S+D + RGMD+EG+ ++NYD P K YIHR GRT RAG+ G
Sbjct: 285 ETIEMFRRGRYSVLISTDVVARGMDMEGIKIIINYDMPDGHKEYIHRIGRTGRAGETGSS 344
Query: 391 FTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
TL+ + +V+ F+KL K D +SI S LI SL
Sbjct: 345 ITLVTQYDVEEFRKLEVKLDL-KMDEYSISSDLIYSL 380
>gi|444321634|ref|XP_004181473.1| hypothetical protein TBLA_0F04210 [Tetrapisispora blattae CBS 6284]
gi|387514517|emb|CCH61954.1| hypothetical protein TBLA_0F04210 [Tetrapisispora blattae CBS 6284]
Length = 639
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 219/432 (50%), Gaps = 80/432 (18%)
Query: 7 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 53
FP+Q + +T+ P L F R D+ +N+ TGSGKTL Y +PI+Q LS+R
Sbjct: 194 FPIQ-TILLDTVLPILNFSLSITKKHFTRRVGDILVNASTGSGKTLGYCIPIIQALSSRK 252
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V LR+L++LPT+ L QV D + +A L + ++ ++S+ +E + +K+
Sbjct: 253 VNKLRSLIILPTKLLINQVFDTLSKLAEGTSLIISISKLENSLKEEHQKFLKQ------- 305
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
+P DIL+ TPGRL+DH+ L++L LV+DE DRLL +++Q W
Sbjct: 306 --EP-----------DILIMTPGRLVDHL-QLNSINLKNLKMLVLDEADRLLNQSFQNWC 351
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
++ + +E+ DK ++K V SATLT
Sbjct: 352 SELM----------------------------NKIKLEKN--DKLPGNIIKFVFSATLTT 381
Query: 234 DPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEK 289
+ KL +L + P LF+ Y LP L+ + + +S KPL L+ L +L K
Sbjct: 382 NTEKLNKLQFYKPKLFIMDTVKLYNLPTTLQEFNINIPTAKSVYKPLILLRLFANLKRSK 441
Query: 290 CIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRS---KTLKAFR---EGKI 341
+VF S E++ RL +LL + L + ++ S + + R+ + + AF E I
Sbjct: 442 ILVFVKSNEASLRLASLLKMMNDKNLITETQDISSINSNNSRTDNKRLVNAFSSTIENSI 501
Query: 342 -QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
++L+++D ++RG+D+ + +V+NYD P + Y+HR GRTARAG G+ + +L K
Sbjct: 502 NKILITTDLISRGIDINDITHVINYDLPISSQQYVHRCGRTARAGSEGQAYNMLVGKGEK 561
Query: 401 RFKKLLQKADND 412
+F Q+ DND
Sbjct: 562 QF--WTQQIDND 571
>gi|313220373|emb|CBY31228.1| unnamed protein product [Oikopleura dioica]
Length = 521
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 200/396 (50%), Gaps = 70/396 (17%)
Query: 1 MGISSLFPVQVAVWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 58
M +S+FPVQ A+ E + GP RDL + +PTGSGKT+++ +PIVQ L +RA+ +R
Sbjct: 151 MNFTSVFPVQRAIIPELLRRGPP---RDLAVQAPTGSGKTITFLVPIVQKLMHRAIPSIR 207
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
AL+VLPTR+LA QV DV + L+ L VG +++ + ++L +
Sbjct: 208 ALIVLPTRELAKQVNDVLLELIKGTKLASHLLVGATTLDQDCNKLT-------------Q 254
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ E + DI+VATPGRLMDH+ G L L +LVVDE DR+ AWL + Q
Sbjct: 255 TIGGEKYATCDIIVATPGRLMDHLE--NGLDLSRLRFLVVDEADRM----RGAWLEKLEQ 308
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
T NR L K++ SATL DP L
Sbjct: 309 KT-----NR--------------------------------ALLQKLLFSATLASDPQFL 331
Query: 239 AQLDLHHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
+ L L P T+G T+ L E + Y + E KP + +L++ + + ++F +S
Sbjct: 332 SSLKLRFPKLYTSGWTQPAGLTEEMIRYGRLDE---KPRIIRSLIKD--DTRALIFVNSN 386
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
ES L LL G ++ + + R +K F++GKI ++ +D + RG+D++
Sbjct: 387 ESAVALDDLLKKSG---VRCESIAKTLENWQRKNAIKKFKKGKISAIICTDVVARGLDLD 443
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
N V+NYD T++HR+GRTARAG G C TL
Sbjct: 444 CCNIVINYDVALSAATHVHRSGRTARAGSAGVCITL 479
>gi|313234211|emb|CBY10279.1| unnamed protein product [Oikopleura dioica]
Length = 521
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 200/396 (50%), Gaps = 70/396 (17%)
Query: 1 MGISSLFPVQVAVWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 58
M +S+FPVQ A+ E + GP RDL + +PTGSGKT+++ +PIVQ L +RA+ +R
Sbjct: 151 MNFTSVFPVQRAIIPELLRRGP---PRDLAVQAPTGSGKTITFLVPIVQKLMHRAIPSIR 207
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
AL+VLPTR+LA QV DV + L+ L VG +++ + ++L +
Sbjct: 208 ALIVLPTRELAKQVNDVLLELIKGTKLASHLLVGATTLDQDCNKLT-------------Q 254
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ E + DI+VATPGRLMDH+ G L L +LVVDE DR+ AWL + Q
Sbjct: 255 TIGGEKYATCDIIVATPGRLMDHLE--NGLDLSRLRFLVVDEADRM----RGAWLEKLEQ 308
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
T NR L K++ SATL DP L
Sbjct: 309 KT-----NR--------------------------------ALLQKLLFSATLASDPQFL 331
Query: 239 AQLDLHHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
+ L L P T+G T+ L E + Y + E KP + +L++ + + ++F +S
Sbjct: 332 SSLKLRFPKLYTSGWTQPAGLTEEMIRYGRLDE---KPRIIRSLIKD--DTRALIFVNSN 386
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
ES L LL G ++ + + R +K F++GKI ++ +D + RG+D++
Sbjct: 387 ESAVALDDLLKKSG---VRCESIAKTLENWQRKNAIKKFKKGKISAIICTDVVARGLDLD 443
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
N V+NYD T++HR+GRTARAG G C TL
Sbjct: 444 CCNLVINYDVALSAATHVHRSGRTARAGSAGVCITL 479
>gi|50288559|ref|XP_446709.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661318|sp|Q6FST5.1|DBP6_CANGA RecName: Full=ATP-dependent RNA helicase DBP6
gi|49526017|emb|CAG59636.1| unnamed protein product [Candida glabrata]
Length = 651
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 213/415 (51%), Gaps = 76/415 (18%)
Query: 5 SLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNR 52
S FP+Q A+ + + F R D+ +N+ TGSGKTL+Y++PI+QTLS+R
Sbjct: 215 STFPIQTAMLDQYLKLINFTLKTSKKNFTRRIGDILVNASTGSGKTLAYSIPIIQTLSSR 274
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V LR L++LPT+ L QV + +A L + ++ ++S +E L+K
Sbjct: 275 TVNKLRVLIILPTKLLINQVFQTMSQLAEGTSLVITVSKLENSFNEEHKRLLK------- 327
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+ DI + TPGRL+DH+ +L +L +LV+DE DRLL +++Q W
Sbjct: 328 -------------TEPDIFITTPGRLVDHL-TNSSISLRNLKFLVLDEADRLLNQSFQNW 373
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+P V+ +SD ++ +P + ++KMV SATLT
Sbjct: 374 IPEVMSKFKSDKFDQ-------MPGS-----------------------IIKMVFSATLT 403
Query: 233 QDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEE 288
+ KL L L++P LF T Y LP L+ Y+L +S KPLYL+ LL+ L
Sbjct: 404 TNTEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVYKPLYLLKLLEQLSGG 463
Query: 289 KCIVFTSSVESTHRLCTLLN-----HFGELRIKIKEYSGLQRQSVRSKTLKAFRE----G 339
K +VF S ES+ +L LL H L+I + + ++ + + F +
Sbjct: 464 KTLVFVRSNESSLKLEVLLKSLIKGHMTTLQIVVHSINSNNSKAENRRLVTDFTKESLPN 523
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ VL+++D M+RG+D+E + NV+NYD P + Y+HR GRTARA + G+ + +L
Sbjct: 524 QTNVLITTDLMSRGIDIENIANVINYDVPISSQQYVHRCGRTARANKDGKAYNML 578
>gi|410078027|ref|XP_003956595.1| hypothetical protein KAFR_0C04690 [Kazachstania africana CBS 2517]
gi|372463179|emb|CCF57460.1| hypothetical protein KAFR_0C04690 [Kazachstania africana CBS 2517]
Length = 629
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 132/404 (32%), Positives = 203/404 (50%), Gaps = 69/404 (17%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+ +N+ TGSGKTL+Y++PI+QTLSNR + LR L+++PT+ L QV + ++ L
Sbjct: 234 DILVNASTGSGKTLAYSIPIIQTLSNRKINKLRCLIIVPTKMLIHQVFETLQKLSSGTSL 293
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
+ + ++S+ +E S L LQ DIL+ TPGRL+D + +
Sbjct: 294 VISTSKLENSLREEHSRL--------------------LQVEPDILIITPGRLVDLL-SM 332
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
+ +L++L +LV+DE DRLL +++Q W +L +D S T LP
Sbjct: 333 KSISLKNLKFLVLDEADRLLNQSFQNWSEELLHSLNNDK----SQVDT-LPG-------- 379
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLES 264
+VKMV SATLT + KL L L++P LFLT Y LP++L+
Sbjct: 380 ---------------NVVKMVFSATLTTNTEKLNTLRLYNPKLFLTQSVKLYNLPKKLQE 424
Query: 265 YKLICESKLKPLY--------LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE---- 312
IC K LY L +Q + K ++F S E++ RL TLL+ E
Sbjct: 425 TN-ICIPTAKSLYKPLFLLHLLKKKVQESIDNKILIFVKSNEASLRLATLLSVMAEKFNS 483
Query: 313 -LRIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
+ I + +S +K + F + K + +L+++D M+RG+D+ + NV+NYD P
Sbjct: 484 STSLLINSINSNNTKSQNNKIVNEFGQNKGSSMHILITTDLMSRGIDINSITNVINYDLP 543
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
+ Y+HR GRTARA G LL ++F Q+ D D
Sbjct: 544 ISSQQYVHRVGRTARANMDGNAINLLVGKGERKFWN--QQIDED 585
>gi|403215284|emb|CCK69783.1| hypothetical protein KNAG_0D00300 [Kazachstania naganishii CBS
8797]
Length = 637
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 145/420 (34%), Positives = 216/420 (51%), Gaps = 85/420 (20%)
Query: 7 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 53
FP+Q A+ +TI P + F R D+ +N+ TGSGKTLSY +P+VQTLS+R
Sbjct: 210 FPIQTAIL-DTILPTINTTYKITKRNFTRRVGDVLVNAATGSGKTLSYTIPLVQTLSSRT 268
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V LRAL+++PT+ L QV D + + V + ++S+ +E +LI
Sbjct: 269 VNRLRALILVPTKPLIHQVYDTLTKLIKGTNIIVSFSKLENSLREEHQKLI--------- 319
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
S DIL+ TPGRL+DHIN + +L +L +LV+DE DRLL +++Q W
Sbjct: 320 -----------NSEPDILIVTPGRLVDHINL-KSISLRNLKFLVLDEADRLLNQSFQNWC 367
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP-RLVKMVLSATLT 232
++Q ++ +N P P ++KMV SATLT
Sbjct: 368 HELMQQLDTEKQNV-----------------------------DPMPGNVIKMVFSATLT 398
Query: 233 QDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQ----S 284
+ KL L L++P LF+T Y LP L+ Y + +S KPL+L+ LLQ +
Sbjct: 399 TNTAKLHDLKLYNPRLFVTDSVKLYNLPPTLQEYNIHIPTAKSLYKPLFLLRLLQLKTTT 458
Query: 285 LGEE----KCIVFTSSVESTHRLCTL---LNHFGELRIKIKEYSGLQRQSVRSKTLKAF- 336
GEE K +VF S +++ RL +L LN G++ + + + + R L F
Sbjct: 459 EGEEKQRAKVLVFVKSNQNSLRLASLLQILNKEGDMTVHSINSNNSKVDNKR--LLAEFS 516
Query: 337 RE--GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
RE QVL+++D M+RG+D+ + +VVNYD P + Y+HR GRTARA G + LL
Sbjct: 517 RETASSTQVLITTDLMSRGIDINNITDVVNYDVPLSSQQYVHRCGRTARANAAGFAYNLL 576
>gi|207341548|gb|EDZ69573.1| YNR038Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 515
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 227/473 (47%), Gaps = 94/473 (19%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 81 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 139
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 140 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 196
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 197 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 238
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W P ++ ++D + LP ++KM+ SAT
Sbjct: 239 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 268
Query: 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 285
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 269 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 328
Query: 286 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 328
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 329 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 388
Query: 329 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 389 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 448
Query: 385 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 449 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSS 501
>gi|6324366|ref|NP_014436.1| Dbp6p [Saccharomyces cerevisiae S288c]
gi|1730678|sp|P53734.1|DBP6_YEAST RecName: Full=ATP-dependent RNA helicase DBP6; AltName: Full=DEAD
box protein 6
gi|1302541|emb|CAA96318.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285814686|tpg|DAA10580.1| TPA: Dbp6p [Saccharomyces cerevisiae S288c]
gi|392297030|gb|EIW08131.1| Dbp6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 629
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 227/473 (47%), Gaps = 94/473 (19%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 285
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 286 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 328
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 329 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 385 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>gi|259148989|emb|CAY82233.1| Dbp6p [Saccharomyces cerevisiae EC1118]
gi|323346760|gb|EGA81041.1| Dbp6p [Saccharomyces cerevisiae Lalvin QA23]
gi|365763421|gb|EHN04950.1| Dbp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 629
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 227/473 (47%), Gaps = 94/473 (19%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 285
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 286 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 328
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 329 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 385 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>gi|190408963|gb|EDV12228.1| ATP-dependent RNA helicase DBP6 [Saccharomyces cerevisiae RM11-1a]
Length = 629
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 227/473 (47%), Gaps = 94/473 (19%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNASKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 285
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 286 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 328
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 329 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 385 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>gi|160380625|sp|A6ZSB3.1|DBP6_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP6; AltName: Full=DEAD
box protein 6
gi|151944567|gb|EDN62845.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
Length = 629
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 227/473 (47%), Gaps = 94/473 (19%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 285
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSIYKPLILLYSICQFM 442
Query: 286 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 328
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 329 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHPSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 385 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>gi|256273352|gb|EEU08290.1| Dbp6p [Saccharomyces cerevisiae JAY291]
Length = 629
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/470 (30%), Positives = 225/470 (47%), Gaps = 94/470 (20%)
Query: 7 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 53
FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL R
Sbjct: 198 FPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLFKRQ 256
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
+ LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 257 INRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLEP-- 311
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q W
Sbjct: 312 ---------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQGWC 355
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
P ++ ++D + LP ++KM+ SATLT
Sbjct: 356 PKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSATLTT 385
Query: 234 DPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSLGEE 288
+ KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 386 NTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHS 445
Query: 289 ----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSVRSK 331
K ++F S ES+ RL LL E R + LQ ++ K
Sbjct: 446 PIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKK 505
Query: 332 TLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
+ F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA +L
Sbjct: 506 IVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANEL 565
Query: 388 GRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
G + LL + E F L + D D + + +L+ES +Y S
Sbjct: 566 GSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>gi|323303225|gb|EGA57024.1| Dbp6p [Saccharomyces cerevisiae FostersB]
Length = 629
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 227/473 (47%), Gaps = 94/473 (19%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGXSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 285
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 286 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 328
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 329 RSKTLKAFRE----GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSGSAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 385 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>gi|349580973|dbj|GAA26132.1| K7_Dbp6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 629
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 212/438 (48%), Gaps = 80/438 (18%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+ +N+ TGSGKTL+Y++PIVQTL R + LR ++++PT+ L QV + L
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSL 288
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
V +A ++S+ DE +L LE DIL+ TPGRL+DH+N
Sbjct: 289 IVSIAKLENSLKDEHKKL---SNLEP-----------------DILITTPGRLVDHLNM- 327
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
+ L++L +L++DE DRLL +++Q W P ++ ++D + LP
Sbjct: 328 KSINLKNLKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKLDT-------LPG-------- 372
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLES 264
++KM+ SATLT + KL L+L+ P LFL + Y+LP +L
Sbjct: 373 ---------------NVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNE 417
Query: 265 YKL---ICESKLKPLYLV-ALLQSLGEE----KCIVFTSSVESTHRLCTLLNHFGELRIK 316
+ + +S KPL L+ ++ Q + K ++F S ES+ RL LL E R +
Sbjct: 418 FNINIPTAKSIYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQ 477
Query: 317 IKEYSGLQR-------------QSVRSKTLKAF----REGKIQVLVSSDAMTRGMDVEGV 359
LQ ++ K + F I +L+++D M+RG+D+ +
Sbjct: 478 SSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHPSESAGITILITTDIMSRGIDINDI 537
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH- 417
V+NYD P + Y+HR GRTARA +LG + LL + E F L + D D +
Sbjct: 538 TQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQP 597
Query: 418 -SIPSSLIESLRPVYKSG 434
+ +L+ES +Y S
Sbjct: 598 LELDFTLLESDSELYTSS 615
>gi|449017342|dbj|BAM80744.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 592
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 225/464 (48%), Gaps = 101/464 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRA 59
I+ LFP Q V L D+ + +PTGSGKTL YAL ++ L S+ ++ C+RA
Sbjct: 76 AITHLFPFQKEVLAYIRSTALTHSGDVLLGAPTGSGKTLIYALAVLLDLYSSASLFCVRA 135
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LVVLPTR+LA QV+ +F + + LS +AV +S L +R P
Sbjct: 136 LVVLPTRELARQVEGIFRTLTASAKLSARVAV--------LSLLRERV---------PRS 178
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L Q+ + + TPGRL++ ++ L L +LV+DE DRL R++YQ WL +LQ
Sbjct: 179 DLLNRQA---VCITTPGRLVEALD-RHELLLADLRWLVIDEADRLFRQSYQNWLERLLQ- 233
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
R R D P RL K++ SAT T+D LA
Sbjct: 234 ---------------------------RIDCARRVLDPPLRRLRKLLFSATQTRDATHLA 266
Query: 240 QLDLHHPLFL-----TTG-----ETRYKLPERLESYKLIC-------ESKLKPLY----- 277
L LHHP++L T G + R L +++ + +C E KL+ L
Sbjct: 267 ALRLHHPVYLLCHASTEGARQPSKLRRGLMDQVPAGLTLCSLRFLSEEDKLRFLLRLIVC 326
Query: 278 ---LVALLQSLGEE-------KCIVFTSSVESTHRLCTL---------LNHFGE------ 312
++A L+ ++ + ++F SVE+THRLC L H+
Sbjct: 327 GPDILATLRDPSDQSSRPDHNRMLIFVKSVETTHRLCRFVQLASNWLWLRHYPSPVSTRD 386
Query: 313 --LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
R+ +E S +S R+ TL+ F+ G Q L+ SD M RGMD+ ++VVN+D PA+
Sbjct: 387 RGPRLLAEEISKQVSESARAATLERFQRGTTQWLICSDVMARGMDIAEASHVVNFDVPAH 446
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK-KLLQKADNDS 413
TY+HR GR ARAG+ G T L +++V F+ +++ + ND+
Sbjct: 447 PTTYLHRVGRVARAGRPGTALTFLLRNQVGYFQSEIIARVRNDT 490
>gi|449666070|ref|XP_002163050.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like, partial
[Hydra magnipapillata]
Length = 431
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 200/395 (50%), Gaps = 64/395 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALP++QTL + R L ALV+ PTR+LA Q+
Sbjct: 21 IQREAIPLALEGKDIIGLAETGSGKTGAFALPVLQTLLDNPQR-LYALVITPTRELAFQI 79
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ ++G+ + VG + + L K+P I++
Sbjct: 80 SEQFEALGSSIGIKCAVIVGGVDLMTQSLALTKKPH---------------------IVI 118
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF+L L YL++DE DR+L ++ + +L++ + S
Sbjct: 119 ATPGRLVDHLENTKGFSLRSLKYLIMDEADRILNMDFEEEVNKILKVIPKER-------S 171
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T+ KL + L +P+ +
Sbjct: 172 TYL-------------------------------FSATMTKKVAKLQRASLKNPVKVEVS 200
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+++ E+L+ + +K K YLV++L L I+F + + R+C LL H G
Sbjct: 201 -TKFQTVEKLQQSYIFIPNKFKDCYLVSILNDLAGNSFIIFCGTCNNVQRVCLLLRHLGF 259
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + G Q+ R L ++ +L+++D +RG+D+ V+ V+N+D P + K
Sbjct: 260 HAVPL---HGQMTQAKRLGALNKYKSKSRTILIATDVASRGLDIPHVDIVINFDIPTHSK 316
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
YIHR GRTARAG+ GR T + + +V+ ++++ Q
Sbjct: 317 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 351
>gi|358255930|dbj|GAA57535.1| ATP-dependent RNA helicase DDX51/DBP6, partial [Clonorchis sinensis]
Length = 1092
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 225/496 (45%), Gaps = 106/496 (21%)
Query: 1 MGISSLFPVQVAVWQETIG--------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
+G S LFPVQ V + P D+CI +PTGSGKTL+Y++P++Q L R
Sbjct: 543 IGCSELFPVQACVIPSILRSYRLNKRRPLCRPSDICIAAPTGSGKTLAYSIPLIQLLHGR 602
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG--LAVGQSSIADEISELIKRPKLE 110
LRALV+LP RDLA QV V +A L V L SI LI K
Sbjct: 603 VQVFLRALVILPVRDLAAQVFQVLLDLAEGTDLRVSCLLICTNCSITPLQIVLINGSKSF 662
Query: 111 AGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 169
D D + + DI+VATPGRL+DHI T GF+LE L LV+DE DR++ E
Sbjct: 663 MKEQLDLVDTTSSVAHTKADIVVATPGRLVDHIYNTVGFSLERLRILVIDEADRVISEEK 722
Query: 170 QAWLPTVLQLTRSDNENRFSDASTFLPSAF-----GSLKTIRRCGVERG---------FK 215
Q W R + + + P+AF G + R G++R +
Sbjct: 723 QDWY-------------RILEDALYHPNAFAFDIDGEIGYRRPTGLQRTRPVMTIMHQYD 769
Query: 216 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKLIC----- 269
L K++ SATLT DP L + +L+ P LF ++ + R + ++C
Sbjct: 770 TSHDITLQKILASATLTHDPEPLKRFNLYFPHLFASSTSAQ----PRNSNGPIVCDIGHA 825
Query: 270 -ESKLKP--------LYLVALLQSLGEEKCI--------------VFTS---------SV 297
E L+P +AL + + VF++ +V
Sbjct: 826 VEPDLEPPMKKKKKQKKKIALSEGMAHNASHTDCSETVQDAGGVGVFSTPPGLKEYVVAV 885
Query: 298 ESTHR---LCTLLNH---------------FGELRIKIKEYSGLQRQSV--------RSK 331
+ HR L L+ H L + + + G++ + R +
Sbjct: 886 QPEHRALFLIHLIRHENVKRVLCFTNSRTTAARLHMLLSNFKGIRSYRISGHMPPDKRQR 945
Query: 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
L AF ++ VLV +D+M RGMDV+ VN VV+Y+ P +K Y+HR GRTARAGQ G +
Sbjct: 946 VLSAFTRNELDVLVCTDSMARGMDVKEVNCVVSYEMPPNVKIYVHRVGRTARAGQPGLAY 1005
Query: 392 TLLHKDEVKRFKKLLQ 407
TLL+K++ FKK L+
Sbjct: 1006 TLLNKNQFFHFKKDLR 1021
>gi|448535807|ref|XP_003871022.1| Dbp6 protein [Candida orthopsilosis Co 90-125]
gi|380355378|emb|CCG24896.1| Dbp6 protein [Candida orthopsilosis]
Length = 609
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 135/424 (31%), Positives = 210/424 (49%), Gaps = 71/424 (16%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--------DLCINSPTGSGKTLSYALPIVQTLSNRA 53
G + F VQV+V + TI P + D+ +N+ TGSGKTL+Y++PIVQ L +R
Sbjct: 188 GFNEAFAVQVSVLK-TIIPEIIANKRRPDAFGDILVNASTGSGKTLAYSIPIVQALHDRV 246
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V +RA+V++PTR L QVK ++ LSV SI +E SE +K+
Sbjct: 247 VPRVRAIVLVPTRPLINQVKTTMLQLSQGTNLSVVGLKNDISIKEE-SEKLKK------- 298
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
DI+V+TPGRL++H+N +L L +LV+DE DRLL +++Q W
Sbjct: 299 ------------MVPDIVVSTPGRLVEHLNIN-SISLSGLRFLVIDEADRLLNQSFQNWS 345
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
LT +E + +R ++ ++ K+V SATLT
Sbjct: 346 SV---LTNKIDEQQ-----------------------KRDISERWSLKVQKLVFSATLTT 379
Query: 234 DPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQS 284
D KL+ L+ + P + +T + +P L + + + ++ LKPL L L S
Sbjct: 380 DAGKLSNLNFYKPRLIIVNDTEQLVNEMFSVPSLLSEFIIHYGVAKNSLKPLILAKFLAS 439
Query: 285 LGE-EKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQ-RQSVRSKTLKAFREG 339
+ ++FT S ES RL LL + + I + + R SVR++ L+ F
Sbjct: 440 QKKLSNVLIFTKSNESCIRLSKLLQLIMDAFSMSINVAFINSTNNRTSVRARVLRDFSTQ 499
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDE 398
KI +L+++D + RG+D+ + +V+NYD P + Y+HR GRTARA G + + K E
Sbjct: 500 KINILIATDLIARGIDLTTITDVINYDLPNSSREYVHRVGRTARAKNAGNAYNFVFGKGE 559
Query: 399 VKRF 402
K F
Sbjct: 560 RKWF 563
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 200/393 (50%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L D+ + TGSGKT ++A+PI+Q L + R L AL++ PTR+LA Q+
Sbjct: 48 IQREAIPVALQGSDIIGLAETGSGKTGAFAIPILQKLLDSPQR-LYALILTPTRELAFQI 106
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ A+G+ + VG + + L K+P I++
Sbjct: 107 SEQFEALGSAIGVKCAVVVGGIDMMSQSLMLAKKPH---------------------III 145
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ + S
Sbjct: 146 ATPGRLIDHLENTKGFNLRALKFLVMDEADRILNMDFEQEVDKILKVIPRER-------S 198
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T+ KL + L +P+ +
Sbjct: 199 TYL-------------------------------YSATMTKKVAKLQRASLQNPVKVEVS 227
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y+ ++L+ Y L +K K +YLV++L L +VFTS+ +T R +L + G
Sbjct: 228 -SKYQTVDKLQQYYLFVPAKFKDVYLVSVLNELAGNSFMVFTSTCANTQRTALMLRNLGL 286
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS R +L F+ +L+++D +RG+D+ V+ V+N+D P + K
Sbjct: 287 TAIPLH---GQMSQSKRLGSLNKFKSKSRSILIATDVASRGLDIPHVDVVINFDIPTHSK 343
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 344 DYIHRVGRTARAGRSGKAITFVSQYDVELYQRI 376
>gi|50310747|ref|XP_455395.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660305|sp|Q6CKZ4.1|DBP6_KLULA RecName: Full=ATP-dependent RNA helicase DBP6
gi|49644531|emb|CAG98103.1| KLLA0F06941p [Kluyveromyces lactis]
Length = 630
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 211/422 (50%), Gaps = 83/422 (19%)
Query: 4 SSLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGKTLSYALPIVQTLSN 51
S FP+Q ++ + + LF R D+ +N+ TGSGKTL+Y++P+VQ L +
Sbjct: 196 SETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRS 255
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RA++++PT+ L QV D + ++ L+V ++ ++S+ +E ++
Sbjct: 256 RTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKF-------- 307
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
L ++ DIL+ TPGRL+DH+ F L+ L +LV+DE DRLL +++Q
Sbjct: 308 ------------LYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLVLDEADRLLNQSFQN 354
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
W + +D ++ +R G ++KMV SATL
Sbjct: 355 WNQVLFHHLTNDKQD-------------------KRPG-----------NVIKMVFSATL 384
Query: 232 TQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGE 287
T + KL L LH+P +FLT Y +P++L+ + +S KPL L+ ++ +
Sbjct: 385 TTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKS 444
Query: 288 E-----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEY--------SGLQRQSVRSKTLK 334
K +VF S E++ RL +LL+ I EY S + + S R K ++
Sbjct: 445 SASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLSSIHSNISKGSSR-KLIQ 503
Query: 335 AF--REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
F E K VL+S+D M RG+D+ + +V+NYD P + Y+HR GRTARA G
Sbjct: 504 EFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAIN 563
Query: 393 LL 394
LL
Sbjct: 564 LL 565
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 46 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 102
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 103 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 143
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 144 --VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 199
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 200 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 223
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L I+F S+ +T R LL
Sbjct: 224 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFIIFCSTCNNTQRTALLL 282
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 283 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 339
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 340 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 377
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 46 PTKIQI--EAIPMALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 102
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 103 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 143
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 144 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 199
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 200 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 223
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 224 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 282
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 283 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 339
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 340 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 377
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 199/398 (50%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+QTL R L ALV+ PTR+
Sbjct: 42 PTKIQI--EAIPMALQGRDIIGLAETGSGKTGAFALPILQTLLESPQR-LYALVLTPTRE 98
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 99 LAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPH------------------- 139
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L + YLV+DE DR+L ++ + +L++ D +
Sbjct: 140 --IVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 195
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ +KL + L P+
Sbjct: 196 -----TFL-------------------------------FSATMTKKVHKLQRAALKDPV 219
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ + + SK K YLV +L L ++F S+ +T R+ LL
Sbjct: 220 KCAVS-SKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRVALLL 278
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 279 RNLGFTAIPLHGQMG---QNKRLGALNKFKAKSRSILLATDVASRGLDIPHVDVVINFDI 335
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 336 PTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 199/396 (50%), Gaps = 66/396 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E+I L +D+ + TGSGKT ++ALPI+Q L R L AL++ PTR+LA Q+
Sbjct: 49 IQRESIPLALEGKDVIGLAETGSGKTGAFALPILQDLLEHPQR-LFALILTPTRELAFQI 107
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ A+G+ + VG + + +L K+P ++V
Sbjct: 108 SEQFEALGSAIGIKCAVVVGGIDMMSQALQLAKKPH---------------------VVV 146
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L + YLV+DE DR+L ++ L +L++
Sbjct: 147 ATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVI------------ 194
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTT 251
PR + L SAT+T+ KL + L +P+ +
Sbjct: 195 ---------------------------PRERRTYLYSATMTKKVAKLQRASLKNPVKVEV 227
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
T+Y+ E+L Y L SK K +YLV +L L +VF S+ +T R+ +L + G
Sbjct: 228 N-TKYQTVEKLLQYYLFIPSKYKDVYLVYILNELAGNSFMVFCSTCNNTQRVALMLRNLG 286
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+ + G Q+ R L F+ +L+++D +RG+D+ V+ V+N+D P +
Sbjct: 287 LTAVPL---HGQMSQNKRLGMLNKFKGKDRSILIATDVASRGLDIPHVDIVINFDIPTHS 343
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
K YIHR GRTARAG+ G+ T + + +V+ ++++ Q
Sbjct: 344 KDYIHRVGRTARAGKSGKAITFVTQYDVELYQRIEQ 379
>gi|365991671|ref|XP_003672664.1| hypothetical protein NDAI_0K02300 [Naumovozyma dairenensis CBS 421]
gi|343771440|emb|CCD27421.1| hypothetical protein NDAI_0K02300 [Naumovozyma dairenensis CBS 421]
Length = 709
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 214/431 (49%), Gaps = 87/431 (20%)
Query: 7 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 53
FP+Q + +TI P L F R D+ +N+ TGSGKTL+Y++PI+QTLS R
Sbjct: 250 FPIQ-TILLDTILPTLNFSLKTTKKHFTRRVGDILVNASTGSGKTLAYSIPIIQTLSKRK 308
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V LRAL+++PT+ L QV D + ++ GL + ++ ++S+ +E KL+
Sbjct: 309 VNKLRALIIVPTKLLIHQVYDTLSKLSQGTGLIITMSKLENSLKEE------HIKLQTN- 361
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
+P DIL+ TPGRL+DH+N F L++L LV+DE DRLL +++Q W
Sbjct: 362 --EP-----------DILITTPGRLVDHLNM-NSFNLKNLKMLVLDEADRLLNQSFQNWC 407
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+++ D + +P S+ T + G ++KM+ SATLT
Sbjct: 408 NELMKKLTIDKTPIYQ-----IPGDEISMSTDQMPG-----------NIIKMIFSATLTT 451
Query: 234 DPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL-ICESKLKPLYLVALL--------Q 283
+ KL L L P LF+ Y LP L+ Y + I +K L L Q
Sbjct: 452 NTQKLHDLKLFKPKLFVMDSVKLYHLPSTLQEYIINIPTAKSLFKPLYLLKLLLKQYEDQ 511
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL-----QRQSVRSKTLKA--- 335
+ + +VF S ES+ RL TL L+I I + S L Q S+ S KA
Sbjct: 512 QMQGSRILVFVKSNESSLRLATL------LKIMINKTSNLNESNYQINSINSNNSKADNR 565
Query: 336 ---------FREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
F + + ++L+++D M+RG+D+ + +V+NYD P + Y+HR+GRTAR
Sbjct: 566 KLVTEFSKPFEDSSMLHAKILITTDLMSRGIDINNITDVINYDLPLSSQQYVHRSGRTAR 625
Query: 384 AGQLGRCFTLL 394
A G + +L
Sbjct: 626 ARSNGNAYNML 636
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 198/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+QTL R L ALV+ PTR+
Sbjct: 42 PTKIQI--EAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESPQR-LYALVLTPTRE 98
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ +G+ + VG + + L K+P
Sbjct: 99 LAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKP-------------------- 138
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 139 -HVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 195
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L P+
Sbjct: 196 -----TFL-------------------------------FSATMTKKVQKLQRAALKDPV 219
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ + + SK K YLV +L L ++F S+ +T R+ LL
Sbjct: 220 KCAVS-SKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRVALLL 278
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 279 RNLGFTAIPL---HGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDI 335
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 336 PTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 197/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ + +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKESSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 197/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L + R L ALV+ PTR+
Sbjct: 46 PTKIQI--EAIPMALQGRDIIGLAETGSGKTGAFALPILNALLDTPQR-LFALVLTPTRE 102
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 103 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 143
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 144 --VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 199
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 200 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 223
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 224 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 282
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 283 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 339
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 340 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 377
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 197/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ V E+I L RD+ + TGSGKT ++ALPI+Q L R ALV+ PTR+
Sbjct: 39 PTKIQV--ESIPLALQGRDIIGLAETGSGKTGAFALPILQALLETPQRFF-ALVLTPTRE 95
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 96 LAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKPH------------------- 136
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 137 --VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 192
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L P+
Sbjct: 193 -----TFL-------------------------------FSATMTKKVQKLQRAALKDPV 216
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 217 KCAVS-SKYQTVEKLQQYYVFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLL 275
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R +L F+ VL+++D +RG+D+ V+ V+N+D
Sbjct: 276 RNLGFTAIPL---HGQMNQNKRLGSLNKFKAKARSVLLATDVASRGLDIPHVDVVINFDI 332
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 333 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 370
>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
Length = 383
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 18 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 74
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 75 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 115
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 116 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 171
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 172 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 195
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 196 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 254
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 255 RNLGFTAIPLH---GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 311
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 312 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 349
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 146
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 286 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 342
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Equus caballus]
Length = 455
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|354478220|ref|XP_003501313.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Cricetulus
griseus]
Length = 455
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAV-SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 146
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 286 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 342
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 40 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 96
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 97 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 137
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 138 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRK-- 193
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 194 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 217
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 218 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 276
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 277 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 333
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 334 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 371
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ V E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQV--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|45200872|ref|NP_986442.1| AGL225Cp [Ashbya gossypii ATCC 10895]
gi|74692158|sp|Q751D1.1|DBP6_ASHGO RecName: Full=ATP-dependent RNA helicase DBP6
gi|44985570|gb|AAS54266.1| AGL225Cp [Ashbya gossypii ATCC 10895]
gi|374109687|gb|AEY98592.1| FAGL225Cp [Ashbya gossypii FDAG1]
Length = 607
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 207/413 (50%), Gaps = 76/413 (18%)
Query: 7 FPVQVAVWQE---------TIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNRAV 54
FP+Q A+ ++ + R D+ +N+ TGSGKTL+YA+ ++ LS R V
Sbjct: 185 FPIQTALLDSVLPLMSQAYSVSKRYYTRKVGDILVNASTGSGKTLAYAMLLIHILSRRTV 244
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LRA++++PT+ L QV D A+A + V ++ +S+ +E ++L +
Sbjct: 245 NKLRAVILVPTKLLVHQVYDTVQALAKGSSVVVAVSKMDTSLKEESAKLKAQ-------- 296
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+P D+L+ TPGRL+DH+N + F+L++L +LV+DE DRLL +++Q W
Sbjct: 297 -EP-----------DVLIITPGRLVDHLN-MQTFSLKNLKFLVLDEADRLLNQSFQNWC- 342
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
++ + R ER FK ++KM+ SATLT +
Sbjct: 343 ---------------------------IELMTRLNAERPFKGP--GNVIKMIFSATLTTN 373
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEE--K 289
+L L LH+P G Y +P +L+ Y L +S KPL L+ LL L E +
Sbjct: 374 TERLHDLQLHNPKLFLMGSQLYHMPAQLQEYNLPIPTSKSYAKPLILLRLLPLLSTESLR 433
Query: 290 CIVFTSSVESTHRLCTLL-----NHFGELRIKIKEYSGLQRQSVRSKTLKAF---REGKI 341
+VF S E++ RL LL N + + + ++ K ++AF G
Sbjct: 434 ILVFVKSNEASIRLAALLTAMVGNGLSAVSTTVGSINNNNSKATNRKLIEAFAAGASGHC 493
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+LVS+D M+RG+D+ G+++V+NYD P + Y+HR GRTARA G LL
Sbjct: 494 SILVSTDLMSRGLDISGISHVINYDLPISSQQYVHRCGRTARANTSGTAVNLL 546
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Canis lupus familiaris]
Length = 456
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Ovis aries]
Length = 457
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 146
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 286 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 342
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Callithrix jacchus]
Length = 455
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|344243858|gb|EGV99961.1| putative ATP-dependent RNA helicase DDX47 [Cricetulus griseus]
Length = 586
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 178 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 234
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 235 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPH------------------- 275
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 276 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 331
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 332 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 355
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 356 KCAV-SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 414
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 415 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 471
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 472 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 509
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
Length = 455
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 42 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 98
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 99 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 139
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 140 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 195
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 196 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 219
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 220 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 278
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 279 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 335
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 336 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 373
>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Meleagris gallopavo]
Length = 447
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 198/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L + R L ALV+ PTR+
Sbjct: 42 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRE 98
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 99 LAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH------------------- 139
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 140 --IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK-- 195
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 196 -----TFL-------------------------------FSATMTKQVQKLQRAALKNPV 219
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L +VF S+ +T R LL
Sbjct: 220 KCAV-SSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMVFCSTCNNTQRTALLL 278
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 279 RNLGFTAIPLH---GQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDI 335
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 336 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 373
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Papio anubis]
Length = 455
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 192/390 (49%), Gaps = 64/390 (16%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75
E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+LA Q+ +
Sbjct: 53 EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRELAFQISEQ 111
Query: 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135
F A+ ++G+ + VG + L K+P I++ATP
Sbjct: 112 FEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH---------------------IIIATP 150
Query: 136 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
GRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D + TFL
Sbjct: 151 GRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-------TFL 203
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
SAT+T+ KL + L +P+ ++
Sbjct: 204 -------------------------------FSATMTKKVQKLQRAALKNPVKCAVS-SK 231
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 315
Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL + G I
Sbjct: 232 YQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAI 291
Query: 316 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 375
+ G QS R +L F+ +L+++D +RG+D+ V+ VVN+D P + K YI
Sbjct: 292 PL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYI 348
Query: 376 HRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
HR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 349 HRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMNQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 53 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 109
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 110 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 150
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 151 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 206
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 207 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 230
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L +VF S+ +T R LL
Sbjct: 231 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMVFCSTCNNTQRTALLL 289
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 290 RNLGFTAIPL---HGQMSQTKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 346
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 347 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 384
>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Oryctolagus cuniculus]
Length = 455
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAV-SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|431908355|gb|ELK11952.1| Putative ATP-dependent RNA helicase DDX47 [Pteropus alecto]
Length = 472
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 195/398 (48%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 64 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 120
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 121 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 161
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 162 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT- 218
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
++ SAT+T+ KL + L +P+
Sbjct: 219 -------------------------------------LLFSATMTKKVQKLQRAALKNPV 241
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 242 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 300
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 301 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 357
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 358 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 395
>gi|339243967|ref|XP_003377909.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
Length = 496
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 199/399 (49%), Gaps = 68/399 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P +V + E I L RD+ + TGSGKT ++ALPI+Q L R L ALV+ PTR+
Sbjct: 85 PTKVQI--EAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEHPQR-LFALVLTPTRE 141
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ +G+ V + VG + + L K+P
Sbjct: 142 LAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPH------------------- 182
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
++VATPGRL+DH+ T+GF+L L YLV+DE DR+L +++ + +LQ+
Sbjct: 183 --VIVATPGRLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVI------- 233
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL-SATLTQDPNKLAQLDLHHP 246
PR K L SAT+T+ KL + L P
Sbjct: 234 --------------------------------PRERKTYLFSATMTKKVTKLQRASLQDP 261
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ + ++Y+ ++L+ + + K K YLV +L + + CIVFTS+ ++ R L
Sbjct: 262 VKVEVS-SKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAGKSCIVFTSTCANSLRTALL 320
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L + G + + G Q+ R L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 321 LRNLGFTAVPL---HGQMSQAKRLGALNKFKAKDRSILIATDVASRGLDIPHVDLVINFD 377
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G T + + +V+ ++++
Sbjct: 378 IPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRI 416
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 139 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 195
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 196 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 236
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 237 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 292
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 293 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 316
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 317 KCAV-SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 375
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 376 RNLGFTAIPLH---GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 432
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 433 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 470
>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
Length = 453
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 198/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L + R L ALV+ PTR+
Sbjct: 48 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRE 104
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 105 LAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH------------------- 145
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 146 --IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK-- 201
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 202 -----TFL-------------------------------FSATMTKQVQKLQRAALKNPV 225
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 226 KCAV-SSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLL 284
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 285 RNLGFTAIPL---HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDI 341
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 342 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 379
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E + L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAVPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L R L ALV+ PTR+
Sbjct: 49 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLETPQR-LFALVLTPTRE 105
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVHTTVIVGGIDAMSQSLALAKKPH------------------- 146
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --VIIATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYIFIPSKFKDSYLVHILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 286 RNLGFTAIPL---HGQMSQNKRLGALNKFKAKARSILLATDVASRGLDIPHVDVVINFDI 342
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 380
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L + R ALV+ PTR+
Sbjct: 48 PTKIQI--EAIPMALDGRDIIGLAETGSGKTGAFALPILNALLDTPQRFF-ALVLTPTRE 104
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 105 LAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPH------------------- 145
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L+L D +
Sbjct: 146 --VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRK-- 201
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 202 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 225
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L +VF S+ +T R LL
Sbjct: 226 KCAVS-SKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAGNSFMVFCSTCNNTQRTALLL 284
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 285 RNLGFTAIPL---HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 341
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 342 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRI 379
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 195/398 (48%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ V E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQV--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQTAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKDPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 378
>gi|383854018|ref|XP_003702519.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Megachile rotundata]
Length = 453
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 198/395 (50%), Gaps = 64/395 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E+I L +D+ + TGSGKT ++ALPI+Q L R AL++ PTR+LA Q+
Sbjct: 44 IQRESIPLTLQGKDIIGLAETGSGKTAAFALPILQALLENPQRYF-ALILTPTRELAFQI 102
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ ++G+ + VG + + L K+P IL+
Sbjct: 103 SEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPH---------------------ILI 141
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++
Sbjct: 142 ATPGRLIDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRV------------- 188
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+P RR ++ SAT+T+ KL + L +P+ +
Sbjct: 189 --IPRE-------RRT----------------LLFSATMTKKVQKLQRASLRNPVKVEVS 223
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+Y+ E+L+ Y + K K +YLV +L L ++F ++ +T R LL + G
Sbjct: 224 -TKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGF 282
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 283 TAVPL---HGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSK 339
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
YIHR GRTARAG+ GR T + + +V+ ++++ Q
Sbjct: 340 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
>gi|443726900|gb|ELU13896.1| hypothetical protein CAPTEDRAFT_175937 [Capitella teleta]
Length = 453
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 120/395 (30%), Positives = 198/395 (50%), Gaps = 64/395 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E+I L D+ + TGSGKT S+ALP++QTL + R + LV+ PTR+LA Q+
Sbjct: 53 IQKESIPVALQGSDVIGLAETGSGKTGSFALPVLQTLLDNPQR-MYCLVLTPTRELAFQI 111
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ ++G+ + VG + + L K+P I++
Sbjct: 112 SEQFEALGASIGVKCAVIVGGMDMMTQSMVLAKKP---------------------HIII 150
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ + +
Sbjct: 151 ATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEQEVNKILKVIPKERK------- 203
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T KL + L +P+ +
Sbjct: 204 TYL-------------------------------YSATMTSKVAKLQRACLKNPVKVEVS 232
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+Y+ ++L+ +K K +YLV +L L IVF S+ +T R+ +L + G
Sbjct: 233 -TKYQTVDKLQQSYCFIPAKFKDVYLVYILNELAGNSFIVFCSTCANTQRVALMLRNLGM 291
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+++D +RG+D+ VN VVN+D P + K
Sbjct: 292 TAIPL---HGQMNQTKRLGALNKFKSKSRSILIATDVASRGLDIPHVNVVVNFDIPTHSK 348
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
YIHR GRTARAG+ G+ TL+ + +V+ ++++ Q
Sbjct: 349 DYIHRVGRTARAGKSGKAITLVTQYDVELYQRIEQ 383
>gi|449017072|dbj|BAM80474.1| DEAD box protein [Cyanidioschyzon merolae strain 10D]
Length = 453
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 129/396 (32%), Positives = 192/396 (48%), Gaps = 56/396 (14%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++A+PI+Q L R ALV+ PTR+LA Q+
Sbjct: 45 IQREAIPAALAGKDIVGLAQTGSGKTAAFAIPILQFLLEDP-RPYFALVLSPTRELAFQI 103
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ V VG + + L KRP ++V
Sbjct: 104 SEQFLALGSEIGVRVATLVGGMDMVGQAVTLAKRPH---------------------VVV 142
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDA 191
TPGR++DH+ AT+GFTL+H+ LV+DE DRLL ++ L +L + RSD + S
Sbjct: 143 GTPGRVVDHLTATKGFTLKHVRILVLDEADRLLNMDFEEELDQILAAVPRSDADP--SKG 200
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
TF + + SAT+T KL + L +
Sbjct: 201 ETFARKTY--------------------------LFSATMTSQVAKLQRASLRSKETVRI 234
Query: 252 G-ETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNH 309
+Y E L + L K K YL L + L CIVFT + S RL +L +
Sbjct: 235 EVSAKYSTVETLVQHYLFIPEKYKDCYLTYLFEELVARHSCIVFTDTQSSAQRLALMLRN 294
Query: 310 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 369
G + I G Q R L F+ G+ +LV++D +RG+D+ V+ V+NYD P
Sbjct: 295 LGYGAVCIH---GGMSQPNRLGALNQFKSGEKHILVATDVASRGLDIPLVDFVINYDIPP 351
Query: 370 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+ K YIHR GRTARAG+ GR +L+ + +V+ F+K+
Sbjct: 352 HGKDYIHRVGRTARAGRTGRAISLVSQYDVELFQKV 387
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Felis catus]
Length = 455
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYVFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|380013608|ref|XP_003690844.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Apis
florea]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 195/393 (49%), Gaps = 66/393 (16%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75
E I L +D+ + TGSGKT ++ALPI+Q L R AL++ PTR+LA Q+ +
Sbjct: 47 EAIPLALEGKDIIGLAETGSGKTAAFALPILQALLENPQRYF-ALILTPTRELAFQISEQ 105
Query: 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135
F A+ ++G+ + VG + + L K+P IL+ATP
Sbjct: 106 FEALGSSIGVKCAVIVGGMDMMSQALILAKKP---------------------HILIATP 144
Query: 136 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
GRL+DH+ T+GF+L L +LV+DE DR+L ++ + +L++
Sbjct: 145 GRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVI--------------- 189
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGET 254
PR K +L SAT+T+ KL + L +P+ + T
Sbjct: 190 ------------------------PRERKTLLFSATMTKKVQKLQRASLRNPVKVEVS-T 224
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
+Y+ E+L+ Y + K K +YLV +L L ++F ++ +T R LL + G
Sbjct: 225 KYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTA 284
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
+ + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K Y
Sbjct: 285 VPL---HGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDY 341
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
IHR GRTARAG+ GR T + + +V+ ++++ Q
Sbjct: 342 IHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Apis mellifera]
Length = 452
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 195/393 (49%), Gaps = 66/393 (16%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75
E I L +D+ + TGSGKT ++ALPI+Q L R AL++ PTR+LA Q+ +
Sbjct: 47 EAIPLALEGKDIIGLAETGSGKTAAFALPILQALLENPQRYF-ALILTPTRELAFQISEQ 105
Query: 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135
F A+ ++G+ + VG + + L K+P IL+ATP
Sbjct: 106 FEALGSSIGVKCAVIVGGMDMMSQALILAKKP---------------------HILIATP 144
Query: 136 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
GRL+DH+ T+GF+L L +LV+DE DR+L ++ + +L++
Sbjct: 145 GRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVI--------------- 189
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGET 254
PR K +L SAT+T+ KL + L +P+ + T
Sbjct: 190 ------------------------PRERKTLLFSATMTKKVQKLQRASLRNPVKVEVS-T 224
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
+Y+ E+L+ Y + K K +YLV +L L ++F ++ +T R LL + G
Sbjct: 225 KYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTA 284
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
+ + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K Y
Sbjct: 285 VPL---HGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDY 341
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
IHR GRTARAG+ GR T + + +V+ ++++ Q
Sbjct: 342 IHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 195/398 (48%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R ALV+ PTR+
Sbjct: 48 PTKIQI--EAIPMALEGRDIIGLAETGSGKTGAFALPILNALLETPQRFF-ALVLTPTRE 104
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 105 LAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKP-------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L+L D +
Sbjct: 145 -HVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRK-- 201
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 202 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 225
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L +VF S+ +T R LL
Sbjct: 226 KCAVS-SKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAGNSFMVFCSTCNNTQRTALLL 284
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 285 RNLGFTAIPL---HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 341
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 342 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRI 379
>gi|50547515|ref|XP_501227.1| YALI0B22572p [Yarrowia lipolytica]
gi|74660077|sp|Q6CDN5.1|DBP6_YARLI RecName: Full=ATP-dependent RNA helicase DBP6
gi|49647093|emb|CAG83480.1| YALI0B22572p [Yarrowia lipolytica CLIB122]
Length = 607
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 208/417 (49%), Gaps = 61/417 (14%)
Query: 1 MGISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 54
+G + F VQ AV W Q+ + P + DL +++ TGSGKT +Y +PI++ L +R V
Sbjct: 206 LGYTKAFSVQKAVIPWLLAQQKLLAPDR-KPDLLVSASTGSGKTATYGIPIIEKLRDRIV 264
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
+RA+VVLPT+ L +QV+DV ++ LSV ++ ++ S +R LE
Sbjct: 265 PRIRAVVVLPTKPLVMQVRDVLENLSKGSSLSV------VALRNDRSTKRERAVLETA-- 316
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
DI+VA PGRL++ + ++ +LVVDE DRLL + Y W
Sbjct: 317 --------------DIVVAAPGRLVEQVKENPEL-FSYIEFLVVDEADRLLGQDYYDW-A 360
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
+VLQ +N+ R T L + +R + ++ SATLT +
Sbjct: 361 SVLQ----NNQQRAQAGKTNLTEHY-----VR--------------NMQTLIFSATLTAN 397
Query: 235 PNKLAQLDLHHP-LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
P +A +D+H+P +F+ Y +P+ L + KPL L LL + +VF
Sbjct: 398 PEHIASMDIHNPGVFVIGSSDSYSIPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVF 457
Query: 294 TSSVESTHRLCTLLN----HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
T S E+ R+ ++ KI S R +++K F +GKI LV +D
Sbjct: 458 TKSSETAARVARMMEIMDADIFHKDWKIAAVSAETSSVHRRRSMKQFIDGKIDFLVCTDL 517
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKL 405
++RG+D V+NV+NYD P+ + Y+HR GRTARAG+ G +T L E K F+++
Sbjct: 518 VSRGIDF-VVDNVINYDIPSGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFREI 573
>gi|449481708|ref|XP_002195464.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Taeniopygia
guttata]
Length = 450
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 196/399 (49%), Gaps = 64/399 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
+ V + E I L RD+ + TGSGKT ++ALPI+Q L R L ALV+ PTR
Sbjct: 44 WKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQALLETPQR-LFALVLTPTR 102
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 103 ELAFQISEQFEALGSSIGVQTTVIVGGIDTMSQSLALAKKPH------------------ 144
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
+++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 145 ---VIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK- 200
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
TFL SAT+T+ KL + L +P
Sbjct: 201 ------TFL-------------------------------FSATMTKKVQKLQRAALKNP 223
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ ++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R L
Sbjct: 224 VKCAVS-SKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALL 282
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L + G I + G Q+ R +L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 283 LRNLGFTAIPL---HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFD 339
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 340 IPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 378
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 195/398 (48%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TG GKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGPGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|405964769|gb|EKC30218.1| Putative ATP-dependent RNA helicase DDX47 [Crassostrea gigas]
Length = 1146
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 197/393 (50%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L D+ + TGSGKT ++ALPI+QTL ++ R L ALV+ PTR+LA Q+
Sbjct: 65 IQKEAIPVALQGSDVIGLAETGSGKTGAFALPILQTLLDKPQR-LYALVLTPTRELAFQI 123
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ ++G+ + VG + + L K+P I++
Sbjct: 124 SEQFEALGASIGIKCAVIVGGIDMMTQSLMLAKKPH---------------------IVI 162
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +
Sbjct: 163 ATPGRLVDHLENTKGFNLRSLKYLVMDEADRILNMDFEQEVDKI---------------- 206
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LK I R ER ++ SAT+T+ KL + L +P+ +
Sbjct: 207 ---------LKAIPR---ERN----------TLLFSATMTKKVAKLQRASLQNPVRVEVS 244
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y+ ++L+ Y L K K +YLV +L L +VF S+ +T R+ +L + G
Sbjct: 245 -SKYQTVDKLQQYYLFIPVKFKDVYLVYILNELAGNSFMVFCSTCANTQRVALMLRNLGL 303
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS R L F+ +L+++D +RG+D+ V+ V+N D P + K
Sbjct: 304 TAIPLH---GQMSQSKRLGALNKFKSKNRSILIATDVASRGLDIPHVDVVLNLDIPTHSK 360
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G T + + +V+ ++++
Sbjct: 361 DYIHRVGRTARAGRSGVAITFVSQYDVELYQRI 393
>gi|189208975|ref|XP_001940820.1| ATP-dependent RNA helicase DBP6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976913|gb|EDU43539.1| ATP-dependent RNA helicase DBP6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 643
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 209/439 (47%), Gaps = 88/439 (20%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+C+++ TGSGKTL+Y LPI++ L +R V L A+VV+P+R L Q V + +
Sbjct: 193 DICVSAKTGSGKTLAYLLPIIEQLKDRTVPVLSAIVVVPSRQLVNQALQVAEELCSGTKI 252
Query: 86 SVGLAVGQSSIADEISELIK-RPKLEAGICYDP-------EDVLQELQSAV----DILVA 133
VG A+G + A E +LIK RP+ YDP E L++ Q+ +
Sbjct: 253 KVGTALGNVAFATEQKQLIKLRPQ------YDPRRARELNEKALRQYQTGSMERRGLYED 306
Query: 134 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW-----------LPTVLQLTRS 182
GRL++HI T GF L + +LV+DE D+LL + +Q W P L +
Sbjct: 307 LKGRLVEHIENTTGFLLNAVRWLVIDEADQLLNQNFQGWANVLMDALHGETPVDLMNAQE 366
Query: 183 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 242
+ R DA++ A + RR +L K+VLSAT+ +D KL L
Sbjct: 367 RIQKRERDANSIWSIALPA----RR-------------QLTKVVLSATMEKDVTKLGTLR 409
Query: 243 LHHP-LFLTTGETR-----------YKLPERLESYKL-ICESKLKPLYLVALLQSLGEEK 289
L P L + ET ++LP LE + + + + KPL+L+ +L +
Sbjct: 410 LKRPKLVVVQDETAEVQPLDYEDDVFELPSTLEEFAVHVGDGSNKPLHLLYILLNY---- 465
Query: 290 CIVFTSS------------------VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 331
VF S +S ++ G + I K R K
Sbjct: 466 --VFPGSQTASVSSSDSSASDSSSDSDSDSGDTSVSQQTGRVLIFTKSTENASR-----K 518
Query: 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
LK+F G I++L++SDA +RG+D+ +++V+NYD P I +Y+HR GRTARAG+ G +
Sbjct: 519 LLKSFSSGAIKILIASDAASRGLDIPDISHVINYDLPTSITSYVHRVGRTARAGKPGEAW 578
Query: 392 TLLHKDEVKRFKKLLQKAD 410
TL K E F K + K D
Sbjct: 579 TLFTKTEAAWFLKQVAKGD 597
>gi|159485610|ref|XP_001700837.1| hypothetical protein CHLREDRAFT_167836 [Chlamydomonas reinhardtii]
gi|158281336|gb|EDP07091.1| predicted protein, partial [Chlamydomonas reinhardtii]
Length = 321
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 144/277 (51%), Gaps = 56/277 (20%)
Query: 153 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 212
LC VVDETDRLLR++YQ WLP VL + S L
Sbjct: 98 LCEAVVDETDRLLRQSYQEWLPRVLA--------QLSPQHAVLQQHL------------- 136
Query: 213 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK 272
+V+SATLT+DP KL +L LHHP RY L
Sbjct: 137 -----------HIVVSATLTRDPAKLQRLALHHP--------RYPLALLALLADASAAG- 176
Query: 273 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 332
E IVFTSS+E TH+L +L+ G+L K+ EYS R+
Sbjct: 177 ---------------ESVIVFTSSLEMTHKLYLMLSAVGDLAGKVVEYSSHVPAKERASG 221
Query: 333 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
L+ FR+G +VLV+SDAMTRGMDV+ V V+NYD P Y KTY+HRAGRTARAG+ GR T
Sbjct: 222 LERFRKGDAKVLVASDAMTRGMDVDCVQAVINYDAPVYAKTYVHRAGRTARAGKSGRVVT 281
Query: 393 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 429
LL ++++ FK +++KADN+ +P+ +ES RP
Sbjct: 282 LLRDEDMRHFKAMIRKADNNFVRELKLPAERVESFRP 318
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 59/90 (65%), Gaps = 7/90 (7%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-------RA 53
+ LFPVQ AVWQ + G DLC+ +PTGSGKTL+YALP+V L++ R+
Sbjct: 13 FSFTELFPVQAAVWQHSAGGRSTAHDLCVAAPTGSGKTLAYALPVVNALADTTSHKHSRS 72
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAV 83
+ L+ALVVLPTRDLA QV DVF + AV
Sbjct: 73 LGRLQALVVLPTRDLAAQVYDVFQPLCEAV 102
>gi|367006945|ref|XP_003688203.1| hypothetical protein TPHA_0M01940 [Tetrapisispora phaffii CBS 4417]
gi|357526510|emb|CCE65769.1| hypothetical protein TPHA_0M01940 [Tetrapisispora phaffii CBS 4417]
Length = 668
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 196/382 (51%), Gaps = 64/382 (16%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+ +N+ TGSGKTL+Y++PI+Q L R V LRA++++PT+ L QV + ++A L
Sbjct: 253 DILVNASTGSGKTLAYSIPILQALIKRNVNKLRAIIIVPTKLLINQVFNTLNSLASGSSL 312
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
+ + +SS+ +E +L L + DI+V TPGRL+DH+
Sbjct: 313 IISTSRLESSLNEEHQKL--------------------LANEPDIVVVTPGRLVDHLQMG 352
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
++++L +LV+DE DRLL +++Q W +L R + S +P
Sbjct: 353 -SISVKNLKFLVLDEADRLLNQSFQNWCNELLSKIR-------TQKSDIMPG-------- 396
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLES 264
++KMV SATLT + KL L +HP LF+ Y +P++L+
Sbjct: 397 ---------------NIIKMVFSATLTTNTEKLHSLQFYHPKLFVVDSVKLYNIPKKLQE 441
Query: 265 YKL---ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI----KI 317
+ +S KPL+L+ LL L K +VF S +++ RL +LL+ E + I
Sbjct: 442 FNFAIPTAKSIYKPLFLLRLLDQLSNAKVLVFVKSNQNSLRLTSLLSKLIEQNLGKKHTI 501
Query: 318 KEYSGLQRQSVRSKTLKAFREGKIQ-----VLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + + K + F + +++ VL+++D M+RG+D+ + +V+NYD P +
Sbjct: 502 ESVNSNNSRGTNRKIVNDFSDDRLKKDVCTVLITTDIMSRGIDINNITDVINYDLPISSQ 561
Query: 373 TYIHRAGRTARAGQLGRCFTLL 394
Y+HR GRTARAG G + LL
Sbjct: 562 QYVHRVGRTARAGTEGTTYNLL 583
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 194/395 (49%), Gaps = 64/395 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+Q+L R AL++ PTR+LA Q+
Sbjct: 45 IQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQSLLENPQRYF-ALILTPTRELAFQI 103
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ A+ +G+ + VG + + L K+P IL+
Sbjct: 104 SEQIEALGANIGVKCAVIVGGMDMMSQALILAKKPH---------------------ILI 142
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L+ L YLV+DE DR+L ++ + +L++ +
Sbjct: 143 ATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERH------- 195
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
TFL SAT+T+ KL + L P+ +
Sbjct: 196 TFL-------------------------------FSATMTKKVKKLQRACLRDPVKVEVS 224
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+Y+ E+L+ Y + K K +YLV +L + ++F S+ +T R LL + G
Sbjct: 225 -TKYQTVEKLQQYYIFIPVKFKDVYLVHILNEMAGNSFMIFCSTCNNTIRTALLLRNLGL 283
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 284 TAVPL---HGQMSQNKRLAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSK 340
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
YIHR GRTARAG+ G+ T + + +V+ ++++ Q
Sbjct: 341 DYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQ 375
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 198/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++A+P++Q+L A R L LV+ PTR+
Sbjct: 102 PTKIQI--EAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQR-LHTLVLTPTRE 158
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 159 LAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPH------------------- 199
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L +++ + +L++ D
Sbjct: 200 --VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRR-- 255
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L P+
Sbjct: 256 -----TFL-------------------------------FSATMTKKVQKLQRAALQDPV 279
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
+ ++Y ++L+ + + SK K YLV++L L +VF + +T R+ LL
Sbjct: 280 KCSVS-SKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMVFCGTCNNTQRVALLL 338
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q+ R L F+ VL+++D +RG+D+ V+ V+N+D
Sbjct: 339 RNLGITAIPL---HGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDI 395
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 396 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 433
>gi|448113511|ref|XP_004202369.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
gi|359465358|emb|CCE89063.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
Length = 623
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 211/458 (46%), Gaps = 71/458 (15%)
Query: 1 MGISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
MG F VQ V + + P + DL +N+ TGSGKT++Y++PI++ L R
Sbjct: 195 MGYEEAFSVQNTVLEILLQDIEENKLRPDI-RGDLLVNAATGSGKTIAYSIPIIEALHKR 253
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V +RA++++PT+ L QVK + ++ L + SI +E +L
Sbjct: 254 VVPRVRAIILVPTKPLITQVKSTMSQLSKGTSLRIVSFKSDISIQEEARKLK-------- 305
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
++P D++++TPGRL++H+ + L L +LV+DE DRLL +++Q W
Sbjct: 306 -AHEP-----------DVIISTPGRLVEHL-SNNTLDLSALRFLVIDEADRLLNQSFQNW 352
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
V+ ++ D S+ F K + K++ SATLT
Sbjct: 353 CDVVI--------SKIEDNSSRASMIFDQWKL----------------KTQKLIFSATLT 388
Query: 233 QDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVA-LL 282
D K+A L L P + + + +P L YK+ +S +KPL L LL
Sbjct: 389 TDAGKIAGLQLQKPRLVIVNDKEQMVNEMFSVPPNLLEYKIQVGAAKSSMKPLILARYLL 448
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLL----NHFGELRIKIKEY--SGLQRQSVRSKTLKAF 336
Q+ +VF S E++ RL LL N Y S SVR KTLK F
Sbjct: 449 QNNKTSNVLVFAKSNEASIRLAKLLQILMNSLTSSHQTSVAYLNSTNNSTSVRQKTLKEF 508
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LH 395
K+ +LV++D + RG+D+ + +VVNYD P + Y+HR GRTARA G +T
Sbjct: 509 STQKVGILVATDLIARGIDILSITDVVNYDLPISAREYVHRVGRTARANNHGNAYTFCFG 568
Query: 396 KDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 433
K E K + K+ + SI + + L P K+
Sbjct: 569 KGEGKWYDKVSSSVGRSGKNVDSIALDVNDLLHPEDKT 606
>gi|186703632|emb|CAQ43244.1| ATP-dependent RNA helicase DBP6 [Zygosaccharomyces rouxii]
Length = 628
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 195/387 (50%), Gaps = 75/387 (19%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+ +N+ TGSGKTL+Y++PI++ LS R V LRALV++PT+ L QV D + +A GL
Sbjct: 236 DILVNASTGSGKTLAYSIPIIEALSKRTVNKLRALVIVPTKLLIGQVFDTMSKLAQGTGL 295
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
+ ++ ++S+ +E + I Y+P DIL+ TPGRL+DH+
Sbjct: 296 IISISKLENSLKEEHQKFIN---------YEP-----------DILIVTPGRLVDHLQIG 335
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
+++L LV+DE D LL +++Q W ++ RS ++ +P
Sbjct: 336 -SINMKNLMMLVLDEADHLLNQSFQNWSAELMNNIRSQKLDQ-------MPG-------- 379
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLES 264
++KMV SATLT + KL L L++P LF+ Y LP++L+
Sbjct: 380 ---------------NVIKMVFSATLTTNTEKLHGLHLYNPKLFVKDSVKLYNLPDKLQE 424
Query: 265 YKL---ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
Y + +S KPL+L+ LL L K +VF S E++ RL LL I I+
Sbjct: 425 YNINVPTAKSIYKPLFLLHLLDKLHNAKILVFVKSNEASLRLAPLLT------IMIERKM 478
Query: 322 GLQRQ--SVRSKTLKAFREGKI------------QVLVSSDAMTRGMDVEGVNNVVNYDK 367
G SV S KA + + QVL+++D M+RG+D+ + +V+NYD
Sbjct: 479 GTPHNVLSVNSNNSKAENKRLVHQFATSNTSESNQVLITTDLMSRGIDINDITDVINYDP 538
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLL 394
P + Y+HR GRTARA G LL
Sbjct: 539 PISSQQYVHRCGRTARAQGHGNAHNLL 565
>gi|320581353|gb|EFW95574.1| ATP-dependent RNA helicase DBP6 (DEAD-box protein 6) [Ogataea
parapolymorpha DL-1]
Length = 549
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 142/428 (33%), Positives = 213/428 (49%), Gaps = 68/428 (15%)
Query: 1 MGISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
GI+S F VQ+ V + I P F D +N+ TGSGKTL+Y +PIVQ+L R
Sbjct: 114 FGITSAFSVQINVIESLLKDISANKIDPTPF-GDYLVNASTGSGKTLAYLIPIVQSLIGR 172
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V LR ++++PT+ L QV ++ I + L+ GL + ++ ++S + KL A
Sbjct: 173 VVPRLRCIILVPTKPLITQV---YSNI---LQLTKGLDINALALRSDVSVKEEAKKLAA- 225
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
DI+V+TPGRL++H+ G L L +LVVDE DRLL +++Q W
Sbjct: 226 -------------IKPDIVVSTPGRLVEHL--LNGMDLSQLRFLVVDEADRLLNQSFQNW 270
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
T++ T+ +N+ ++ + F S T++ C K++ SATLT
Sbjct: 271 CDTLI--TKLENDQKYGEGEDFYNSY-----TVK-CS--------------KLIFSATLT 308
Query: 233 QDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKLICESKL---KPLYLVALL- 282
D KL L L P + Y++P L+ + KL KP+ L+ L
Sbjct: 309 TDSEKLFHLKLFKPKLVVINNAEQLVNELYQIPPNLDEKFVRVNEKLAFFKPMVLLRYLE 368
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREG 339
Q +VFT S ES RL LL E L + I + + R+K LK F E
Sbjct: 369 QPEYSSHGLVFTKSNESAIRLARLLTLLSEKLGLDLNIMSVNYSLKSHERAKILKKFHE- 427
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-E 398
+ +L+++D + RGM++E + V+NYD P K YIHR GRTARA + G TL D +
Sbjct: 428 EGGILIATDLIARGMNIESIKFVLNYDLPLSTKEYIHRVGRTARANRHGTAVTLCFGDGD 487
Query: 399 VKRFKKLL 406
+ FK+L+
Sbjct: 488 FRWFKRLV 495
>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
Pb18]
Length = 482
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 186/394 (47%), Gaps = 67/394 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q E I L RDL + TGSGKT ++ALPI+Q L ++ + L L
Sbjct: 74 LGYKTPTPIQT----EAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKP-QSLFGL 128
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ + F A+ + + + VG + + L K+P
Sbjct: 129 VLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPH------------ 176
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 177 ---------IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKV- 226
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
LP RR + SAT++ L +
Sbjct: 227 --------------LPRE-------RRT----------------YLFSATMSSKVESLQR 249
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L +PL ++ ++Y+ L L K K +YLV LL + I+FT +V T
Sbjct: 250 ASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKYKDIYLVYLLNEFAGQSAIIFTRTVNET 309
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RL LL G I + G QS R L FR +LV++D RG+D+ V+
Sbjct: 310 QRLAILLRALGFGAIPLH---GQLSQSYRLGALGKFRSRSRDILVATDVAARGLDIPSVD 366
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V+N+D P KTYIHR GRTARAG+ G F+ +
Sbjct: 367 VVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFV 400
>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
Length = 470
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 200/393 (50%), Gaps = 62/393 (15%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L RD+ + TGSGKT ++ALP++Q L + R L AL++ PTR+LA Q+
Sbjct: 56 IQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQALLEKPQR-LFALILTPTRELAYQI 114
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F + ++G+ G+ VG + + L K+P I+V
Sbjct: 115 SETFEKLGKSIGIKCGVLVGGMDMMSQALVLGKKPH---------------------IIV 153
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L L YL++DE DR+L ++ + +L
Sbjct: 154 ATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKIL--------------- 198
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+ LP G R+ M+ SAT+T+ KL + L +P+ +
Sbjct: 199 SSLPRGEG-----RK----------------NMLFSATMTKKVAKLQRASLQNPVRVEVS 237
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y+ ++L Y L K K +YLV ++ L I+F+S+ T +L LL + G
Sbjct: 238 -SKYQTVDKLLQYYLFIPLKYKEMYLVHIINELAGNSFIIFSSTCSGTLKLALLLRNLGF 296
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + +G Q+ R +L F+ +L+++D +RG+D+ V+ V+NYD P + K
Sbjct: 297 TAIPL---NGQMSQNKRLASLNKFKTKSRSILIATDVASRGLDIPHVDIVINYDIPTHSK 353
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ GR T + + +V+ ++++
Sbjct: 354 DYIHRVGRTARAGRSGRAITFVCQYDVELYQRI 386
>gi|448116165|ref|XP_004202989.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
gi|359383857|emb|CCE79773.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
Length = 615
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 186/384 (48%), Gaps = 61/384 (15%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
DL +N+ TGSGKT++Y++PI++ L R V +RA++++PT+ L QVK + ++ L
Sbjct: 219 DLLVNAATGSGKTIAYSIPIIEALHERVVPRVRAIILVPTKPLITQVKSTMSQLSKGTSL 278
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
S+ S+ +E +L ++P D++++TPGRL++H+ +
Sbjct: 279 SIVSLKSDLSVQEEARKLK---------AHEP-----------DVIISTPGRLVEHL-SN 317
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
L L +LV+DE DRLL +++Q W V+ ++ D S+ F K
Sbjct: 318 STLDLSALRFLVIDEADRLLNQSFQNWCDIVI--------SKIDDTSSRASMIFDHWKL- 368
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------YKLP 259
+ K++ SATLT D K+A L L P + + + +P
Sbjct: 369 ---------------KTQKLIFSATLTTDAGKIAGLQLQKPRLVIVNDKEQMVNEMFSVP 413
Query: 260 ERLESYKL---ICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLL----NHFG 311
L YK+ +S +KPL L L QS ++F S E++ RL LL N
Sbjct: 414 PNLLEYKIQVGAAKSSIKPLILARYLFQSGKTSNVLIFAKSNEASIRLAKLLQILMNSLS 473
Query: 312 ELRIKIKEY--SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 369
Y S SVR KTLK F KI +LV++D + RG+D+ + +VVNYD P
Sbjct: 474 SSHQTSVAYLNSTNNSTSVRQKTLKDFSTQKIGILVATDLIARGIDILSITDVVNYDLPI 533
Query: 370 YIKTYIHRAGRTARAGQLGRCFTL 393
+ Y+HR GRTARA G +T
Sbjct: 534 SAREYVHRVGRTARANNHGNAYTF 557
>gi|254580363|ref|XP_002496167.1| ZYRO0C12012p [Zygosaccharomyces rouxii]
gi|186703847|emb|CAQ43534.1| ATP-dependent RNA helicase DBP6 [Zygosaccharomyces rouxii]
gi|238939058|emb|CAR27234.1| ZYRO0C12012p [Zygosaccharomyces rouxii]
Length = 624
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 195/387 (50%), Gaps = 75/387 (19%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+ +N+ TGSGKTL+Y++PI++ LS R V LRALV++PT+ L QV D + +A GL
Sbjct: 236 DILVNASTGSGKTLAYSIPIIEALSKRTVNKLRALVIVPTKLLIGQVFDTMSKLAQGTGL 295
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
+ ++ ++S+ +E + I Y+P DIL+ TPGRL+DH+
Sbjct: 296 IISISKLENSLKEEHQKFIN---------YEP-----------DILIVTPGRLVDHLQIG 335
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
+++L LV+DE D LL +++Q W ++ RS ++ +P
Sbjct: 336 -SINMKNLMMLVLDEADHLLNQSFQNWSAELMNNIRSHKLDQ-------MPG-------- 379
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLES 264
++KMV SATLT + KL L L++P LF+ Y LP++L+
Sbjct: 380 ---------------NVIKMVFSATLTTNTEKLHGLHLYNPKLFVRDSVKLYNLPDKLQE 424
Query: 265 YKL---ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
Y + +S KPL+L+ LL L K +VF S E++ RL LL I I+
Sbjct: 425 YNINVPTAKSIYKPLFLLHLLDKLHNAKILVFVKSNEASLRLAPLLT------IMIERKM 478
Query: 322 GLQRQ--SVRSKTLKAFREGKI------------QVLVSSDAMTRGMDVEGVNNVVNYDK 367
G SV S KA + + QVL+++D M+RG+D+ + +V+NYD
Sbjct: 479 GTPHNVLSVNSNNSKAENKRLVHQFATSNTSESNQVLITTDLMSRGIDINDITDVINYDP 538
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLL 394
P + Y+HR GRTARA G LL
Sbjct: 539 PISSQQYVHRCGRTARAQGHGNAHNLL 565
>gi|186703621|emb|CAQ43234.1| ATP-dependent RNA helicase DBP6 [Zygosaccharomyces rouxii]
Length = 609
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/412 (31%), Positives = 203/412 (49%), Gaps = 75/412 (18%)
Query: 7 FPVQVAVWQETIG----------PGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAV 54
FP+Q + T+ L R D+ +N+ TGSGKTL+Y++PI++ LS R V
Sbjct: 190 FPIQTVLLDNTLSLLNFTLGVTKKNLTRRVGDILVNASTGSGKTLAYSIPIIEALSKRTV 249
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LR LV++PT+ L QV D + +A GL + ++ ++S+ +E + +
Sbjct: 250 NKLRVLVIVPTKLLIGQVFDTMSKLAQGTGLIISISKLENSLKEEHQKFMN--------- 300
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
Y+P DIL+ TPGRL+DH+ T+++L LV+DE D LL +++Q W
Sbjct: 301 YEP-----------DILIVTPGRLVDHLQIG-SITMKNLMMLVLDEADHLLNQSFQNW-- 346
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
ST L + S K + G ++KMV SATLT +
Sbjct: 347 -----------------STELMNNIKSHKLDQMPG-----------NVIKMVFSATLTTN 378
Query: 235 PNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKC 290
KL L L++P LF+ Y LP++L+ Y + +S KPL+L+ LL L K
Sbjct: 379 TEKLHGLHLYNPKLFVRDSVKLYNLPDKLQEYNVNVPTAKSLYKPLFLLHLLNRLQNAKA 438
Query: 291 IVFTSSVESTHRLCTLLNHFGELRI----KIKEYSGLQRQSVRSKTLKAFREGKI----Q 342
+VF S E++ RL LL E R+ + + +S + + F Q
Sbjct: 439 LVFVKSNEASLRLAPLLAIMIEKRMGASHNVLSVNSNNTKSENKRLVHQFATSDTKESNQ 498
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+L+++D M+RG+D+ + +V+NYD P + Y+HR GRTARA G LL
Sbjct: 499 ILITTDLMSRGIDINDITDVINYDPPISSQQYVHRCGRTARALGRGNAHNLL 550
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 195/393 (49%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E+I L +D+ + TGSGKT ++ALPI+Q L R AL++ PTR+LA Q+
Sbjct: 65 IQRESIPVALQGKDIIGLAETGSGKTAAFALPILQALLENPQRHF-ALILTPTRELAFQI 123
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + L K+P I++
Sbjct: 124 SEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPH---------------------III 162
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH++ T+GF L L +LV+DE DR+L ++A + +L++ +
Sbjct: 163 ATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERR------- 215
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
TFL SAT+T+ NKL + L P+ +
Sbjct: 216 TFL-------------------------------FSATMTKKVNKLQRACLQDPVRVEVS 244
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+Y+ E+L Y + +K K +YLV +L +VF S+ +T R LL + G
Sbjct: 245 -TKYQTVEKLLQYYVFIPAKFKDVYLVHILNENAGNSFMVFCSTCNNTIRTALLLRNLGF 303
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 304 TAVPL---HGQMSQNKRLAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPMHSK 360
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 361 DYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 393
>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
Length = 490
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 181/384 (47%), Gaps = 63/384 (16%)
Query: 11 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 70
A+ QE I L +RD+ + TGSGKT ++ALPI+Q L ++ + L ALV+ PTR+LA
Sbjct: 86 TAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPILQALLDKP-QPLFALVLAPTRELAA 144
Query: 71 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 130
Q+ F A+ + L L +G + + L K+P +
Sbjct: 145 QIAQSFEALGSLINLRCALLLGGLDMVQQAIALGKKPH---------------------V 183
Query: 131 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 190
+VATPGRL+DH+ T+GF+L +L Y V+DE DRLL + L +L+
Sbjct: 184 VVATPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILK------------ 231
Query: 191 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 250
FLP RR + SAT++ L + L PL +
Sbjct: 232 ---FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDPLKVN 265
Query: 251 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 310
++Y+ L S L K Y + L + IVFT +V T R+ LL
Sbjct: 266 VSTSKYQTVSTLVSNYLFIPHIHKDTYFIYLCNEFAGKTMIVFTRTVLETQRIAILLRTL 325
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
G I + + GL QS R L FR G +LV++D RG+D+ V+ V+NYD P
Sbjct: 326 GMGAIPL--HGGLS-QSARLGALSKFRAGTRNILVATDVAARGLDIPNVDCVINYDLPQD 382
Query: 371 IKTYIHRAGRTARAGQLGRCFTLL 394
KTYIHR GRTARAG+ G +++
Sbjct: 383 SKTYIHRVGRTARAGKSGHALSIV 406
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 196/395 (49%), Gaps = 64/395 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I + +D+ + TGSGKT ++ALPI+Q L R AL++ PTR+LA Q+
Sbjct: 50 IQREAIPLTIQGKDVIGLAETGSGKTAAFALPILQALLENPQRYF-ALILTPTRELAFQI 108
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ ++G+ + VG + + L K+P I++
Sbjct: 109 SEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPH---------------------III 147
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++
Sbjct: 148 ATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRV------------- 194
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+P RR ++ SAT+T+ KL + L +P+ +
Sbjct: 195 --IPRE-------RRT----------------LLFSATMTKKVQKLQRASLQNPVKVEVS 229
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+Y+ E+L+ Y + K K +YLV +L L ++F S+ +T R LL G
Sbjct: 230 -TKYQTVEKLQQYYVFIPVKFKDVYLVHILNELSGNSFMIFCSTCNNTMRTALLLRSLGF 288
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 289 MAVPL---HGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSK 345
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
YIHR GRTARAG+ G T + + +V+ ++++ Q
Sbjct: 346 DYIHRVGRTARAGRSGISVTFVTQYDVELYQRIEQ 380
>gi|444726438|gb|ELW66972.1| ATP-dependent RNA helicase DDX51 [Tupaia chinensis]
Length = 478
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 141/441 (31%), Positives = 202/441 (45%), Gaps = 74/441 (16%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV E+ G DLC+++PTGSGKTL++ +P+V
Sbjct: 83 GISSYFPVQAAVIPVVLESAANGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVV----- 137
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
QV VF A L V L GQ +A E L+++
Sbjct: 138 -------------------QVSKVFNVYTDATPLRVALLTGQKPLAKEQESLVQK----- 173
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
P+ + DI+VATPGRL+DHI+ T F+L+ L +L+ +LL A
Sbjct: 174 ----TPDG----YRCLADIVVATPGRLVDHIDQTPAFSLQQLRFLM--PLQKLLFSATLT 223
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
P LQ F +T LP G G P L+ L
Sbjct: 224 QNPEKLQQLGLYQPRLF---TTGLPQRSPGDAGADVDGSSGGKYAFPAGLSPLGALALVL 280
Query: 232 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 291
+D +++ F + E + L KPL + L+ + +
Sbjct: 281 RKDFSRII-------CFTNSRENSHSLSS-------------KPLVALHLVLRKDFSRIL 320
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
FT+S E++HRL L+ FG + E+S R + LK F +GKIQ+L+S+DA
Sbjct: 321 CFTNSRENSHRLFLLVRAFGG--VNAAEFSSRLGPGCRKRLLKQFEQGKIQLLISTDATA 378
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
RG+DV GV V+NYD P Y + Y+HR GRTARAGQ G+ FTLL + + +RF ++L +A
Sbjct: 379 RGIDVPGVELVLNYDAPQYPRAYVHRVGRTARAGQTGQAFTLLLRVQERRFLQMLAEAGV 438
Query: 412 DSCPIHSIPSSLIESLRPVYK 432
+ H IP +++ L P Y+
Sbjct: 439 PTLERHEIPGDVLQPLVPRYE 459
>gi|307104244|gb|EFN52499.1| hypothetical protein CHLNCDRAFT_138879 [Chlorella variabilis]
Length = 576
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 127/191 (66%), Gaps = 2/191 (1%)
Query: 240 QLDLHHPLFLTTG--ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
+L LH P ++ + RY+LP L+ KL+ ++ KP L ALLQ L E+ IVFTSSV
Sbjct: 295 RLGLHCPRYIAMSAVDHRYQLPRSLQELKLVVPAERKPAALAALLQELRGEQTIVFTSSV 354
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
E+THRL LL L + E+S L + R+ L+AFR GK +VLV SDAMTRGMDV
Sbjct: 355 EATHRLHLLLAALPCLPDRAVEFSSLVAPAERAARLEAFRSGKAKVLVCSDAMTRGMDVA 414
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 417
GV NVVNYD P Y+KTY+HRAGRTARAG+ GR FTLL ++V+ FK +L+KADN H
Sbjct: 415 GVANVVNYDAPVYVKTYVHRAGRTARAGRAGRVFTLLRHEDVRHFKGMLRKADNTFVRAH 474
Query: 418 SIPSSLIESLR 428
+ +E++R
Sbjct: 475 RLAKGALEAVR 485
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 99/158 (62%), Gaps = 20/158 (12%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
GI LFPVQ W+ET G D+CI +PTGSGKTLSYALP++Q LS RAV LRALV
Sbjct: 157 GIEVLFPVQTVAWRETAGGASPAHDICICAPTGSGKTLSYALPVLQALSGRAVPRLRALV 216
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
VLPTRDLA+QV V A + PA+GL+ LA G++S+A E L
Sbjct: 217 VLPTRDLAVQVFGVLAGLCPALGLAACLAAGKASLAAEAQLLAS---------------- 260
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159
VDILVATPGRL+ H+ T GFTL HL +LV+D
Sbjct: 261 ----GGVDILVATPGRLIAHLEGTPGFTLRHLRFLVID 294
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 187/394 (47%), Gaps = 67/394 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G ++ P+Q ++I L RD+ + TGSGKT ++ALPI+Q L ++ L L
Sbjct: 71 LGYTNPTPIQA----QSIPHALQNRDVIGLAETGSGKTAAFALPIIQALLDKPSH-LFGL 125
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ F A+ V L V + VG + + L K+P
Sbjct: 126 VLAPTRELAAQIAASFEALGSLVNLRVAVIVGGLDMVAQAIALGKKPH------------ 173
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + + +L+
Sbjct: 174 ---------IVVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILK-- 222
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
F+P RR + SAT++ L +
Sbjct: 223 -------------FIPRE-------RRT----------------FLFSATMSSKIESLQR 246
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L P+ ++ + ++ L + C K YLV L+ +K ++FT +V T
Sbjct: 247 ASLRDPVRISISSSSHQTVSTLIQNYIFCPHNKKDTYLVYLVNEYSGKKIVLFTRTVTET 306
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RL LL G I I G Q+ R L FR G +LV++D RG+D+ V+
Sbjct: 307 QRLAILLRTLGFGAIPIH---GQLNQTARLGALNKFRAGSRDILVATDVAARGLDIPLVD 363
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V+N+D P+ KTY+HR GRTARAG+ G+ T++
Sbjct: 364 VVINFDIPSDSKTYVHRVGRTARAGKSGKAITIM 397
>gi|384487072|gb|EIE79252.1| hypothetical protein RO3G_03957 [Rhizopus delemar RA 99-880]
Length = 462
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 190/400 (47%), Gaps = 68/400 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E+I + RD+ + TGSGKT ++A+PI+Q L + A V+ PTR+LA Q+
Sbjct: 49 IQKESIPWAIEGRDIIGLAQTGSGKTAAFAIPIIQRLWQNP-QAFFACVLAPTRELAYQI 107
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F ++ +G+ + VG + + L KRP I+V
Sbjct: 108 AETFESLGSVIGVRCAVIVGGMDMMTQSIALAKRPH---------------------IIV 146
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
TPGRL DH+ T+GF L+HL YLV+DE DRLL + + +L++ + +
Sbjct: 147 CTPGRLQDHLENTKGFNLKHLKYLVMDEADRLLDLDFGPKIDQILKVIPRER-------N 199
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
TFL SAT+T KL + LH P+ +
Sbjct: 200 TFL-------------------------------FSATMTTKVAKLQRASLHKPVKVEVA 228
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+Y + L Y L K K Y+V LL L I+FT + T ++ +L + G
Sbjct: 229 -TKYSTVKTLLQYYLFFPLKHKDCYMVYLLNELAGNSTIIFTRTCSDTQKIAIMLRNLGF 287
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ G +LV++D +RG+D+ V+ V+NYD P K
Sbjct: 288 GAIPL---HGQLPQAKRLGALNKFKAGARNILVATDVASRGLDIPLVDVVINYDVPQSSK 344
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
YIHR GRTARAG+ G+ T + + +V +L+Q+ + D
Sbjct: 345 DYIHRVGRTARAGRSGKSVTFVTQYDV----ELIQRIEKD 380
>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+Q L + R L AL++ PTR+LA Q+
Sbjct: 40 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDNPQR-LFALILTPTRELAFQI 98
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ A+ +G+ + VG + + L K+P I++
Sbjct: 99 SEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPH---------------------III 137
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF+L L YLV+DE DR+L ++ + +L++ +
Sbjct: 138 ATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERR------- 190
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
TFL SAT+T+ KL + L P+ +
Sbjct: 191 TFL-------------------------------FSATMTKKVQKLQRASLQAPVKVEVA 219
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+Y+ E+L+ L SK K YLV +L L +VF + + R+ +L + G
Sbjct: 220 -TKYQTVEKLQQSYLFIPSKFKDCYLVYVLNELAGNSFMVFCGTCNNVQRVTLMLRNLG- 277
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ G QS R L F+ +LV++D +RG+D+ V+ V+N+D P + K
Sbjct: 278 --LDAVPLHGQMSQSKRLGALNKFKSKSRSILVATDVASRGLDIPHVDVVINFDIPTHSK 335
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ GR T + + +V+ ++++
Sbjct: 336 DYIHRVGRTARAGRSGRSVTFVTQYDVELYQRI 368
>gi|336471127|gb|EGO59288.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2508]
gi|350292214|gb|EGZ73409.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2509]
Length = 515
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 186/394 (47%), Gaps = 67/394 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q +++I L RD+ + TGSGKT ++ALPI+Q L ++ L AL
Sbjct: 108 LGYKNPTPIQ----EQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPA-PLFAL 162
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 163 VLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH------------ 210
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++VATPGRL+DH+ T+GF+L + YLV+DE DRLL + L +L+
Sbjct: 211 ---------VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILK-- 259
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
FLP RR + SAT++ L +
Sbjct: 260 -------------FLPRE-------RRT----------------FLFSATMSSKVESLQR 283
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L PL ++ +Y L+S + K YLV L + I+FT +V T
Sbjct: 284 ASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTIIIFTRTVLET 343
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
R+ LL G I + + GL QS R L FR G ++LV++D RG+D+ V+
Sbjct: 344 QRIAILLRTLGMGAIPL--HGGLS-QSARLGALNKFRAGSREILVATDVAARGLDIPNVD 400
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V+N+D P KTY+HR GRTARAG+ G +++
Sbjct: 401 CVINHDLPQDSKTYVHRVGRTARAGKSGHAISIV 434
>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
gi|74662479|sp|Q7RY59.1|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
Length = 515
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 186/394 (47%), Gaps = 67/394 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q +++I L RD+ + TGSGKT ++ALPI+Q L ++ L AL
Sbjct: 108 LGYKNPTPIQ----EQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPA-PLFAL 162
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 163 VLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH------------ 210
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++VATPGRL+DH+ T+GF+L + YLV+DE DRLL + L +L+
Sbjct: 211 ---------VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILK-- 259
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
FLP RR + SAT++ L +
Sbjct: 260 -------------FLPRE-------RRT----------------FLFSATMSSKVESLQR 283
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L PL ++ +Y L+S + K YLV L + I+FT +V T
Sbjct: 284 ASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTIIIFTRTVLET 343
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
R+ LL G I + + GL QS R L FR G ++LV++D RG+D+ V+
Sbjct: 344 QRIAILLRTLGMGAIPL--HGGLS-QSARLGALNKFRAGSREILVATDVAARGLDIPNVD 400
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V+N+D P KTY+HR GRTARAG+ G +++
Sbjct: 401 CVINHDLPQDSKTYVHRVGRTARAGKSGHAISIV 434
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 202/429 (47%), Gaps = 69/429 (16%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRAL 60
G +S P+Q A TI L +D+ + TGSGKT ++ +PI++ L R+ R L
Sbjct: 205 GFNSPTPIQAA----TIPVALLGKDVVGGAVTGSGKTAAFIIPILERLLYRSRDAHTRVL 260
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V++PTR+LA+Q V + + L VG S+ + + L RP
Sbjct: 261 VLVPTRELAVQCHAVAEKLGTFTDVRCALIVGGLSLKAQEATLRTRP------------- 307
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
D++VATPGRL+DH+ +R F L+ L LV+DE DR+L + + L ++Q
Sbjct: 308 --------DLVVATPGRLIDHLRNSRSFALDALDVLVLDEADRMLSDGFADELKEIVQ-- 357
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
S T R+ M+ SAT+T D L +
Sbjct: 358 --------------------SCPTGRQT----------------MLFSATMTDDVETLIR 381
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALLQSLGEEKCIVFTSSVE 298
L L HP+ L ++ ++ + + K +P LVAL Q + I+F S +
Sbjct: 382 LSLRHPVRLFVDPSKQTARGLVQEFVRVRAGKEAERPALLVALCQRTARKGVIIFFRSKK 441
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
H+ + FG +K E G Q R L FR G+ L+++D +RG+D+ G
Sbjct: 442 LAHQFRVV---FGLCGLKALELHGNLTQEQRLNALTKFRSGEADYLLATDLASRGLDIRG 498
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418
+ V+NYD P I+ Y+HR GRTARAG+ GR TL+ + + K K +++++ D
Sbjct: 499 IETVINYDMPGQIEQYVHRVGRTARAGKKGRSITLVGEADRKMLKAAIKRSEADKIRHRV 558
Query: 419 IPSSLIESL 427
+PS ++ S+
Sbjct: 559 VPSEVVASV 567
>gi|340960548|gb|EGS21729.1| ATP-dependent rRNA helicase rrp3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 492
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 182/382 (47%), Gaps = 63/382 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ ++ I L RDL + TGSGKT ++ALPI+Q L ++ + L ALV+ PTR+LA Q+
Sbjct: 96 IQEQAIPLALQNRDLIGIAETGSGKTAAFALPILQALLDKP-QPLFALVLAPTRELAAQI 154
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
F A+ + L L +G + + L K+P ++V
Sbjct: 155 AQAFEALGSMISLRCALILGGLDMVQQAIALGKKPH---------------------VIV 193
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L+
Sbjct: 194 ATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILK-------------- 239
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
FLP RR + SAT++ L + L PL ++
Sbjct: 240 -FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDPLKVSIS 275
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y+ L + + K YL+ L+ + I+FT +V T R+ LL G
Sbjct: 276 TSKYQTVSTLVQHYIFIPHIHKDTYLIYLVNEFAGKTIIIFTRTVLETQRIAILLRTLGM 335
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + + GL QS R L FR G +LV++D RG+D+ V+ V+N+D P K
Sbjct: 336 GAIPL--HGGLS-QSARLGALNKFRAGSRNILVATDVAARGLDIPNVDCVLNFDLPQDSK 392
Query: 373 TYIHRAGRTARAGQLGRCFTLL 394
TY+HR GRTARAG+ G + +
Sbjct: 393 TYVHRVGRTARAGKSGHAISFV 414
>gi|409082704|gb|EKM83062.1| hypothetical protein AGABI1DRAFT_33446 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200570|gb|EKV50494.1| hypothetical protein AGABI2DRAFT_64060 [Agaricus bisporus var.
bisporus H97]
Length = 453
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 191/401 (47%), Gaps = 64/401 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + + E + L RD+ + TGSGKT ++ LPI+Q L + L A V+ PTR
Sbjct: 37 FKIPTEIQVEALPHALEGRDIIGVAATGSGKTAAFGLPILQKLWEEP-KGLFACVLAPTR 95
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ ++ A+G + VG + + L KRP
Sbjct: 96 ELAYQISQQLESLGSAMGARCAVIVGGMDMPAQAIALAKRPH------------------ 137
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRLMDH+ T+GF L ++ +LV+DE DRLL + + +L+L +
Sbjct: 138 ---IVVATPGRLMDHLEKTKGFNLRNIKFLVLDEADRLLDLDFGTIIDKILKLIPKER-- 192
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
+T+L SAT+T KL + L +P
Sbjct: 193 -----TTYL-------------------------------FSATMTTKVAKLQRASLSNP 216
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ + T+Y+ L Y L+ K K YLV L +L + I+FT +V RL +
Sbjct: 217 VRVEV-STKYQTVSTLLQYYLLMPLKDKDAYLVYLANTLAQNSIIIFTRTVHDASRLSII 275
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G + + G QS R L F+ G +VLV++D +RG+D+ V+ V+N+D
Sbjct: 276 LRTLGFPAVPLH---GQLSQSQRLGALGQFKSGGRRVLVATDVASRGLDIPSVDVVINFD 332
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
P + K YIHR GRTARAG+ G+ TL+ + +V+ +++ Q
Sbjct: 333 IPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQ 373
>gi|452845537|gb|EME47470.1| hypothetical protein DOTSEDRAFT_146146 [Dothistroma septosporum
NZE10]
Length = 570
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 217/438 (49%), Gaps = 81/438 (18%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
D+ +N+PTGSGKT++Y LPI++ L + A L AL+++PTR+L QV V ++A
Sbjct: 111 DVAVNAPTGSGKTIAYLLPIIEALRRSHAPGELSALIIVPTRELVQQVAAVAESLAKGSD 170
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ--------------SAVDI 130
+ VG++ + DE ++I G YDP Q++ SAV++
Sbjct: 171 ICVGMSGSTGTFRDEQGKIIN-----CGQRYDPAGYQQQIDDAVNGLVQHVPTYDSAVNV 225
Query: 131 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV-LQLTRSDNENRFS 189
LVATPGRL++HIN T GF L L +LV+DE D+LL Y+ +L ++ ++L R
Sbjct: 226 LVATPGRLLEHINNTPGFNLVRLTWLVIDEADKLLDNQYEGFLESLNVELERPRTTEEQD 285
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
+L R+ G ++++ ++ K++LSAT+T+D +KL L L P +
Sbjct: 286 ARECYL----------RQKGRWEEWRER---KIRKIILSATMTKDISKLTTLKLRRPQMV 332
Query: 250 TTGETR-----------------------YKLPERLESYKL-ICESKLKPLYLVALL--- 282
T ++LP L Y + + + KPL LL
Sbjct: 333 VVRGTECEQQMIAGAELMKEDGVKQTVDGFELPRTLVEYSIPVGDGAEKPLIAFELLRTQ 392
Query: 283 ---QSLGEEK-------CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 332
+S +EK ++FTS ES RL LL +S V++
Sbjct: 393 ILRESDSKEKSQTDTPTVLIFTSRNESATRLSHLLKGIQ------PSWSRYITTLVKTTK 446
Query: 333 LKAF-REGKIQVLVSSDAMTRGMD-VEG--VNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
L+ ++ + ++VS+D RG+D + G + +VV YD P +++Y+HR GRTARAG+ G
Sbjct: 447 LRVTSKKSEPAIIVSTDRAARGLDNIAGRPITHVVQYDVPRSVESYVHRVGRTARAGRSG 506
Query: 389 RCFTLLHKDEVKRFKKLL 406
+ +TL+ + E K F + +
Sbjct: 507 QAWTLVTRAEGKWFNETI 524
>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 438
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+Q L R A+++ PTR+LA Q+
Sbjct: 22 IQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLENPQRYF-AVILTPTRELAYQI 80
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ ++G+ + VG + + +L ++P I++
Sbjct: 81 SEQFEALGASIGVKCCVIVGGMDMVSQALQLARKP---------------------HIII 119
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L+ + YLV+DE DR+L ++ L +L++ +
Sbjct: 120 ATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELDKILKVLPRERR------- 172
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
TFL SAT+T+ KL + L P+ +
Sbjct: 173 TFL-------------------------------FSATMTKKVKKLERASLKDPVKVEVS 201
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y+ E+L Y + +K K +YLV +L L ++F S+ +T R +L G
Sbjct: 202 -SKYQTVEKLLQYYVFIPAKFKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGL 260
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + G Q+ R +L F+ Q+L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 261 AAVPL---HGQMSQNKRLASLNKFKGKDRQILISTDVASRGLDIPHVDVVLNFDIPTHSK 317
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 318 DYIHRVGRTARAGRAGKAVTFVTQYDVELYQRI 350
>gi|335308097|ref|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Sus
scrofa]
Length = 473
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 183/378 (48%), Gaps = 66/378 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 100 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 156
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 157 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 197
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 198 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 253
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 254 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 277
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 278 KCAV-SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 336
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 337 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 393
Query: 368 PAYIKTYIHRAGRTARAG 385
P + K YIHR GRTARAG
Sbjct: 394 PTHSKDYIHRVGRTARAG 411
>gi|397644308|gb|EJK76339.1| hypothetical protein THAOC_01902 [Thalassiosira oceanica]
Length = 476
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 192/393 (48%), Gaps = 60/393 (15%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +I P L RD+ + TGSGKT ++++P++ L + R + A+++ PTR+LA Q+
Sbjct: 80 IQASSIPPALEGRDVIGLAETGSGKTGAFSIPVLNYLLEKPQRSVFAVILAPTRELAFQI 139
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+V AA+ +G S VG +A + L + P ++V
Sbjct: 140 HEVVAALGSGMGASSVCVVGGVDMASQAIALARNPH---------------------VVV 178
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L + YLV+DE DR+L ++ + +L++
Sbjct: 179 ATPGRLLDHLQNTKGFHLRQIKYLVLDEADRMLSMDFEREINEILEV------------- 225
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+P G +T M+ SAT+T KL + L P+ +
Sbjct: 226 --IPDHEGGRRT--------------------MLFSATMTSKVEKLQRASLVDPVRVEV- 262
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+++ P++L L +K K YL L+ + +VF ++ + RL +L + G
Sbjct: 263 STKFQTPKKLLQSYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALMLRNLGF 322
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q R L F+ G +++ +D +RG+D+ V+ V+N+D P + K
Sbjct: 323 PAICLH---GQMSQPKRLGALTKFKAGGRDIMICTDVASRGLDIPSVDVVINFDLPGHGK 379
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ ++ + +V+ +++L
Sbjct: 380 DYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRL 412
>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567, partial [Trichoplax
adhaerens]
Length = 424
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 194/392 (49%), Gaps = 64/392 (16%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75
E I L +D+ + TGSGKT ++ LPI+Q L ++ R L AL++ PTR+LA Q+ +
Sbjct: 24 EAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDKPQR-LFALILTPTRELAFQISEQ 82
Query: 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135
A+ ++G+ + +G + + L K+P I++ TP
Sbjct: 83 IEALGSSIGVQCAVIIGGIDMMTQSIMLAKKP---------------------HIIIGTP 121
Query: 136 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
GRL DH+ T+GF+L L YLV+DE DR+L ++A + +L + L
Sbjct: 122 GRLADHLANTKGFSLRPLKYLVMDEADRILNMDFEAEVDKIL---------------SVL 166
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
P RR + SAT+T+ KL + + P+ + T+
Sbjct: 167 PKE-------RRT----------------YLFSATMTKKVKKLQRASVQDPVKIEVS-TK 202
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 315
Y E+L+ + +K K YLV++L L +VF ++ +T R+ +L + G I
Sbjct: 203 YTTVEKLQQTYIFVPAKYKDCYLVSILNELAGNSFMVFCATCINTQRIGLMLRNLGFNAI 262
Query: 316 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 375
+ G QS R L F+ + +LV++D +RG+D+ V+ V+N+D P++ K YI
Sbjct: 263 PL---HGQMSQSKRLGALHKFKSKESSILVATDVASRGLDIPHVDIVINFDAPSHSKDYI 319
Query: 376 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
HR GRTARAG+ GR + + +V+ F+++ Q
Sbjct: 320 HRVGRTARAGRSGRSIIFVTQYDVELFQRIEQ 351
>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108869558|gb|EAT33783.1| AAEL013950-PA [Aedes aegypti]
Length = 495
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+Q L R A+++ PTR+LA Q+
Sbjct: 83 IQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLENPQRYF-AVILTPTRELAYQI 141
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ ++G+ + VG + + L ++P I++
Sbjct: 142 SEQFEALGASIGIKCCVIVGGMDMVSQALHLARKPH---------------------III 180
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF L+ + YLV+DE DR+L ++ L +L++ +
Sbjct: 181 ATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVIPRERR------- 233
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
TFL SAT+T+ KL + L P+ +
Sbjct: 234 TFL-------------------------------FSATMTKKVKKLERASLKDPVKVEVS 262
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y+ E+L Y + +K K +YLV +L L ++F S+ +T R +L G
Sbjct: 263 -SKYQTVEKLLQYYIFIPAKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGL 321
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + G Q+ R L F+ Q+L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 322 AAVPL---HGQMSQNKRLAALNKFKGKNRQILISTDVASRGLDIPHVDVVLNFDIPTHSK 378
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 379 DYIHRVGRTARAGRAGKAVTFVTQYDVELYQRI 411
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 186/388 (47%), Gaps = 63/388 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +++I L RD+ + TGSGKT ++ALPI+Q L ++ + L ALV+ PTR+LA Q+
Sbjct: 88 IQEQSIPLALQGRDIIGIAETGSGKTAAFALPILQALLDKP-QPLFALVLAPTRELAAQI 146
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
F A+ + L L +G + + L K+P ++V
Sbjct: 147 TQAFEALGSLISLRCALILGGLDMVQQAIALGKKPH---------------------VVV 185
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L+
Sbjct: 186 ATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILK-------------- 231
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
FLP RR + SAT++ L + L PL ++
Sbjct: 232 -FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDPLKVSIS 267
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y+ L L K YL+ L + I+FT +V T R+ LL G
Sbjct: 268 SSKYQTVATLVQNYLFIPHMHKDTYLIYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGM 327
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + + GL QS R L FR G +LV++D RG+D+ V+ V+N+D P K
Sbjct: 328 GAIPL--HGGLS-QSARLGALNKFRAGSRNILVATDVAARGLDIPNVDCVLNFDLPQDSK 384
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK 400
TY+HR GRTARAG+ G +++ + +++
Sbjct: 385 TYVHRVGRTARAGKSGHAISIVTQYDIE 412
>gi|398407893|ref|XP_003855412.1| hypothetical protein MYCGRDRAFT_68754 [Zymoseptoria tritici IPO323]
gi|339475296|gb|EGP90388.1| hypothetical protein MYCGRDRAFT_68754 [Zymoseptoria tritici IPO323]
Length = 736
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 210/429 (48%), Gaps = 71/429 (16%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPTRDLALQVKDVFAAIAPAVG 84
D+ +++ TGSGKT++Y LP+++ L A R L ALVV+PTR+L +QV V ++ G
Sbjct: 297 DVAVSAATGSGKTIAYLLPMIEALRRNATRGRLGALVVVPTRELVVQVAAVADSLCKGCG 356
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
L VG+A G DE + ++ I + V SAVDILVATPGRL++HI++
Sbjct: 357 LKVGMATGTGKFKDEQDHAKEEQRMRDTIHGITQHVAT-YDSAVDILVATPGRLLEHISS 415
Query: 145 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTV---LQLTRSDNENRFSDASTFLPSAFGS 201
T GF L +L +L++DE D+LL Y+ +L ++ L RS +E +
Sbjct: 416 TPGFNLVYLQWLIIDEADKLLDNQYEGFLDSLNAELARPRSIHEQDVRE----------- 464
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT---------- 251
+ +R G+ + D RL K+VLSAT+T+D +KL L L P +
Sbjct: 465 -QYLRSKGM---WDDVRERRLRKVVLSATMTRDISKLTSLRLRRPTMIAVRGSEGIDAQA 520
Query: 252 -----GETR----------YKLPERLESYKL-ICESKLKPLYLVALLQSLGEEKCI-VFT 294
G+ R ++LP L Y + + + KPL S + + +FT
Sbjct: 521 RPGARGDGRDDGFRENASGFELPRTLIEYCVPVGDGSEKPLVRHRKDSSQPQAPTVLIFT 580
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---------VLV 345
+S ES +RL LL +IK + R TL + GK + V+V
Sbjct: 581 ASNESVNRLSHLLK-------EIKPS-----WARRITTLVKLKPGKARITAKADESAVVV 628
Query: 346 SSDAMTRGMDV---EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
S+D RG+D + +V+ YD P + YIHR GRTARAG+ G +TL E + F
Sbjct: 629 STDRAARGLDSFSNRPITHVIQYDVPRSLTGYIHRVGRTARAGRDGDAWTLYTHSEARWF 688
Query: 403 KKLLQKADN 411
+ KA N
Sbjct: 689 VNEITKASN 697
>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
Length = 507
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 192/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+Q L R ALV+ PTR+LA Q+
Sbjct: 81 IQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALLENPQRYF-ALVLTPTRELAFQI 139
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 140 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 178
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 179 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 225
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 226 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 260
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 261 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 319
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 320 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 376
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ GR T++ + +++ ++++
Sbjct: 377 DYIHRVGRTARAGRSGRAITMVSQYDIELYQRI 409
>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
Length = 435
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/398 (28%), Positives = 194/398 (48%), Gaps = 62/398 (15%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P Q+ +I P L RD+ + TGSGKT S+A+PI+ L + + + A+++ PTR+
Sbjct: 62 PTQIQA--ASIPPALEGRDVIGLAETGSGKTGSFAIPILNYLLEKPQKQVFAVILAPTRE 119
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ +V A+ +G + VG +A + L + P
Sbjct: 120 LAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALARNPH------------------- 160
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
++VATPGRL+DH+ T+GF L + YLV+DE DR+L ++ + +L++
Sbjct: 161 --VVVATPGRLLDHLQNTKGFHLRQIKYLVMDEADRMLSMDFEKEINEILEV-------- 210
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
I C E+G + M+ SAT+T KL + L P+
Sbjct: 211 -----------------IPDC--EKGRR--------TMLFSATMTSKVEKLQRASLVDPV 243
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
+ T+++ P++L L +K K YL L+ + +VF ++ + RL +L
Sbjct: 244 RVEV-STKFQTPKKLLQNYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALML 302
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G Q R L F+ G +L+ +D +RG+D+ V+ V+N+D
Sbjct: 303 RNLGFPAICLH---GQMSQPKRLGALTKFKSGGRDILICTDVASRGLDIPSVDVVINFDL 359
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ ++ + +V+ +++L
Sbjct: 360 PGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRL 397
>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
Length = 525
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 193/393 (49%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 97 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRFF-ALVLTPTRELAFQI 155
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ ++G+ + VG + + +L K+P I++
Sbjct: 156 GEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 194
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 195 ATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKV------------- 241
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 242 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 276
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ Y L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 277 -NKYQTVEQLQQYYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 335
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 336 AAIPL---HGQMSQNKRLAALNKFKAKDRSILISTDVASRGLDIPHVDVVLNFDIPTHSK 392
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 393 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 425
>gi|308806291|ref|XP_003080457.1| DEAD (ISS) [Ostreococcus tauri]
gi|116058917|emb|CAL54624.1| DEAD (ISS) [Ostreococcus tauri]
Length = 419
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 207/413 (50%), Gaps = 55/413 (13%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRA 59
+ ++ LFPVQ +V G FERDLC+++PTGSGKTL+Y LP++ LS R +
Sbjct: 16 LQLTQLFPVQRSVLSRAYA-GRFERDLCVSAPTGSGKTLAYMLPLIHILSKRTSTEKTLG 74
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR--PK------LEA 111
L+VLP+ DLA QV V VG+ V + + ++ + S + R PK ++A
Sbjct: 75 LIVLPSSDLATQVCSVAGHFCAKVGVCVRVTGVRGTLPNCDSLRVSRRAPKRRFIRRMQA 134
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ + + S ILV TPG L+ H A +E + +LV+DE D++L++++Q
Sbjct: 135 TASHSKSQ--RSVPSTPQILVTTPGGLVAHRAA-----IETIEFLVIDEADKILQQSHQN 187
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
+L T+ S + R S F+ ++ RL ++ SATL
Sbjct: 188 FLATL----NSGLQRRREVDSVFV-------------------GERHSNRLQILLCSATL 224
Query: 232 TQDPNKLAQLDLHHPLFLTTGETR-YK-----LPERLESYKLICESKLKPLYLVALLQSL 285
+ DLH + R YK LP + + + E+ K L+++L++
Sbjct: 225 KKT-------DLHMIRIFAPDQVRIYKSQVADLPSCISEFVVFSEAGDKFAALLSILKAC 277
Query: 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 345
K ++ +S L L+ G EYS + Q R+++L AF++ + +LV
Sbjct: 278 SSSKMVILCASATRARHLYDQLHQIGSF--TCFEYSSMASQQHRAQSLSAFQKCRRGILV 335
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
++DA TRG+D+EGV+ VV++D+ + +TY+HRAGRT RAG G C T E
Sbjct: 336 ATDAATRGLDIEGVSIVVSFDQAEHFQTYLHRAGRTGRAGNRGICVTTCSTGE 388
>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
Length = 490
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 196/399 (49%), Gaps = 64/399 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
+ V + +E I L +D+ + TGSGKT ++ALPI+Q L + R A+V+ PTR
Sbjct: 68 WKVPSKIQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLDNPQRYF-AVVLTPTR 126
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ + F A+ +G+ + VG + + +L ++P
Sbjct: 127 ELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPH------------------ 168
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I++ATPGRL+DH+ T+GF L+ L YLV+DE DR+L ++ + +L++ +
Sbjct: 169 ---IIIATPGRLVDHLENTKGFGLKALKYLVMDEADRILNMDFEVEVNKILRVIPRERR- 224
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
TFL SAT+T+ KL + L P
Sbjct: 225 ------TFL-------------------------------FSATMTKKVKKLERASLRDP 247
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ + ++Y+ ++L Y + +K K +YLV +L L ++F S+ +T R +
Sbjct: 248 VKVEVS-SKYQTVDKLLQYYIFIPAKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTALM 306
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G + + G Q+ R L F+ Q+L+S+D +RG+D+ V+ V+N D
Sbjct: 307 LRALGLAAVPL---HGQMTQNKRLAALNKFKSQTRQILISTDVASRGLDIPHVDVVLNLD 363
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 364 IPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRI 402
>gi|300175700|emb|CBK21243.2| unnamed protein product [Blastocystis hominis]
Length = 485
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 187/388 (48%), Gaps = 67/388 (17%)
Query: 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83
+D+ + TGSGKT ++A+PI+Q L + R + AL+V PTR+LA Q+ + F A+ +V
Sbjct: 92 NKDIIAIAETGSGKTGAFAIPIIQRLIDNPQR-MYALIVTPTRELAFQISEQFEALGSSV 150
Query: 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 143
GL + VG + + L ++P ++V TPGRL+DH+
Sbjct: 151 GLKTAVIVGGIDMVQQALALARKPH---------------------VVVGTPGRLVDHLE 189
Query: 144 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 203
T+GF+L + YLV+DE DR L ++ + +L S F
Sbjct: 190 NTKGFSLNTMKYLVLDEADRCLSMDFEEAIDKIL-------------------SCF---- 226
Query: 204 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 263
P R V + SAT+TQ KL + L P+ + ++Y+ L
Sbjct: 227 --------------PKER-VTYLFSATMTQKVVKLQRASLQDPVKIQVS-SKYQTVSTLI 270
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
L +K K YL ++ + I+F S+ S+ L L + G + I +G
Sbjct: 271 QQYLFIPAKYKECYLAFIMNEFRGKSTILFVSTCSSSQLLTLFLRNLGFKAVCI---NGN 327
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q R L F+EG +L+++D +RG+D+ V+ VVNYD P K Y+HR GRTAR
Sbjct: 328 LSQVKRLGALNKFKEGARNILIATDVASRGLDIPEVDLVVNYDIPGNGKDYVHRVGRTAR 387
Query: 384 AGQLGRCFTLLHKDEV---KRFKKLLQK 408
AG+ GR T + + +V +R +KL++K
Sbjct: 388 AGKSGRAITFVTQYDVESYQRIEKLIEK 415
>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 195/393 (49%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+Q L + R A+V+ PTR+LA Q+
Sbjct: 82 IQREAIPLALQGKDIIGLAETGSGKTGAFALPILQALLDNPQRYF-AVVLTPTRELAYQI 140
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L ++P I++
Sbjct: 141 SEQFEALGATIGVKCCVIVGGMDLVTQAIQLARKPH---------------------III 179
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF+L+ + YLV+DE DR+L ++ + +L++ +
Sbjct: 180 ATPGRLVDHLENTKGFSLKAIRYLVMDEADRILNMDFEEEVNKILKVMPRERR------- 232
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
TFL SAT+T+ KL + L P+ +
Sbjct: 233 TFL-------------------------------FSATMTKKVKKLERASLRDPVKVEVS 261
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y+ E+L Y L ++ K +YLV +L L ++F S+ +T R +L G
Sbjct: 262 -SKYQTVEKLLQYYLFIPARYKNVYLVHVLNELAGNSFMIFCSTCNNTVRTALMLRALGL 320
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + G Q+ R L F+ Q+L+S+D +RG+D+ V+ V+N D P + K
Sbjct: 321 AAVPL---HGQMTQNKRLAALNKFKSQARQILISTDVASRGLDIPHVDVVLNLDIPMHSK 377
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 378 DYIHRVGRTARAGRAGQAITFVTQYDVELYQRI 410
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 193/395 (48%), Gaps = 64/395 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 85 IQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 143
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 144 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 182
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 183 ATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 229
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 230 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 264
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ ++L+ Y + K K +YLV +L L ++F S+ +T + +L G
Sbjct: 265 -NKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 323
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 324 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 380
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
YIHR GRTARAG+ G+ T++ + +++ ++++ Q
Sbjct: 381 DYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQ 415
>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
Length = 518
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 193/395 (48%), Gaps = 64/395 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 83 IQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 141
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 142 GEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKPH---------------------III 180
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 181 ATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 227
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 228 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 262
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ ++L+ Y L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 263 -NKYQTVDQLQQYYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 321
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 322 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 378
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
YIHR GRTARAG+ G+ T++ + +++ ++++ Q
Sbjct: 379 DYIHRVGRTARAGRSGQAITIVSQYDIELYQRIEQ 413
>gi|254572509|ref|XP_002493364.1| Essential protein involved in ribosome biogenesis [Komagataella
pastoris GS115]
gi|238033162|emb|CAY71185.1| Essential protein involved in ribosome biogenesis [Komagataella
pastoris GS115]
gi|328352620|emb|CCA39018.1| hypothetical protein PP7435_Chr3-0044 [Komagataella pastoris CBS
7435]
Length = 721
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 192/428 (44%), Gaps = 75/428 (17%)
Query: 1 MGISSLFPVQVAVWQ-------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 53
G F VQ++V Q +T DL N+PTGSGKTL Y +PIVQ + R
Sbjct: 240 FGYKEAFSVQISVIQALQHDIKQTRISNSIPGDLLANAPTGSGKTLGYCVPIVQAILGRR 299
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V ++ +++ PT+ L QV + L+V + + ++ +E L
Sbjct: 300 VSSIKCIILAPTKPLVSQVYSTLNQLCTGTDLNV-MELRNDTVDNEKMRLTS-------- 350
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
EL + DI+V+TPGRL++H+NA R L L +LVVDE DR+L W
Sbjct: 351 --------YELPNYPDIIVSTPGRLLEHLNANR-LKLHCLRFLVVDEADRILHSTSFDWC 401
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L+ +D + + L + S+ + K+V SATLT
Sbjct: 402 APLLRKINNDRSTSYGKSGKSLSALNLSVVPCQ-----------------KLVFSATLTT 444
Query: 234 DPNKLAQLDLHHPLFLTTGE-----------TRYKLPERLESYKLICESK-----LKPLY 277
D KL+ L L+ P L + Y+LP L+ L + KPL
Sbjct: 445 DAEKLSHLQLYRPRLLVVNDHGVESGKDGSSELYQLPPSLDELSLTLSNTDGVEFFKPLI 504
Query: 278 LVALLQS------LGE--------EKCIVFTSSVESTHRLCTLLNHFGEL---RIKIKEY 320
L LL +G+ +VF S E++ R+ LL+ E ++++K
Sbjct: 505 LFKLLTEYVYRARMGDMNVSVPFKANVLVFIRSNEASARMEKLLDLLAEAFRKKLRVKSV 564
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
+ L R + F KI VLV++D M RGMD+ +N+V+NYD P + Y+HR GR
Sbjct: 565 NSLLDPETRERRFHDFTRNKIDVLVATDVMARGMDLPNINHVINYDLPGSTREYVHRVGR 624
Query: 381 TARAGQLG 388
TARA + G
Sbjct: 625 TARANKFG 632
>gi|336372365|gb|EGO00704.1| hypothetical protein SERLA73DRAFT_105076 [Serpula lacrymans var.
lacrymans S7.3]
Length = 681
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 210/434 (48%), Gaps = 79/434 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-------A 53
MG+ P+Q A + L +D+ + TGSGKT ++ +PI++ L R A
Sbjct: 204 MGLHKPTPIQAAA----VPVALLGKDVVGGAVTGSGKTAAFTIPIIERLLYRDKGKNAAA 259
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
RCL VV+PTR+LA+Q +V +A + L VG S+ + + L RP
Sbjct: 260 TRCL---VVVPTRELAVQCFEVGTRMAGHTDVRFCLVVGGLSLKSQEAALRSRP------ 310
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
D+L+ATPGRL+DH++ + FTL+ L LV+DE DR+L
Sbjct: 311 ---------------DVLIATPGRLIDHLHNSPSFTLDALDILVLDEADRML-------- 347
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
E+ F+D T + ++ C V R M+ SAT+T
Sbjct: 348 -----------EDGFADELTEI---------VKACPVSRQ----------TMLFSATMTD 377
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK--PLYLVALLQSLGEEKCI 291
+KL +L L P+ + R ++ + + K K P L+ + + + + I
Sbjct: 378 SVDKLIRLSLTKPVRIFVDAKRSMAKGLVQEFVRVRPEKEKERPALLLCICKRTFKTRVI 437
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
VF S + H++ + FG L +K E G Q R K L+AFR+G + L+++D +
Sbjct: 438 VFFRSKKLAHQMRIV---FGLLDMKCDELHGDLSQEQRLKALQAFRDGSVDYLMATDLAS 494
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ-KAD 410
RG+D++G+ V+N+D P+ + Y+HR GRTARAG+ GR T + + + K + +++ A
Sbjct: 495 RGLDIKGIETVINFDMPSQLAQYLHRVGRTARAGKTGRSVTFVGEADRKMLRAVVKHSAG 554
Query: 411 NDSCPIHSIPSSLI 424
DS +P+ ++
Sbjct: 555 EDSVRHRVVPADVV 568
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 193/395 (48%), Gaps = 64/395 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 90 IQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 148
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 149 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 187
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 188 ATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 234
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 235 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 269
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ ++L+ Y + K K +YLV +L L ++F S+ +T + +L G
Sbjct: 270 -NKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 328
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 329 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 385
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
YIHR GRTARAG+ G+ T++ + +++ ++++ Q
Sbjct: 386 DYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQ 420
>gi|367033825|ref|XP_003666195.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
gi|347013467|gb|AEO60950.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
Length = 493
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 184/394 (46%), Gaps = 67/394 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q QE I L RD+ + TGSGKT ++ALPI+Q L ++ + L AL
Sbjct: 83 LGYKNPTPIQ----QEAIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKP-QPLFAL 137
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 138 VLAPTRELAAQIAQAFEALGSLISLRCALILGGLDMVQQAIALGKKPH------------ 185
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++VATPGRL+DH+ T+GF+L +L +LV+DE DRLL + L +L+
Sbjct: 186 ---------VVVATPGRLLDHLEKTKGFSLRNLKFLVMDEADRLLDMDFGPILEKILK-- 234
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
FLP RR + SAT++ L +
Sbjct: 235 -------------FLPRE-------RRT----------------FLFSATMSSKVESLQR 258
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L PL ++ ++Y+ L + K YL+ L + I+FT +V T
Sbjct: 259 ASLRDPLKVSISSSKYQTVSTLVQNYIFIPHMHKDTYLIYLCNEFAGQTIIIFTRTVLET 318
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
R+ LL G I + + GL QS R L FR +LV++D RG+D+ V+
Sbjct: 319 QRIAILLRTLGMGAIPL--HGGLS-QSARLGALNKFRAKSRDILVATDVAARGLDIPNVD 375
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V+N+D P KTY+HR GRTARAG+ G + +
Sbjct: 376 CVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFV 409
>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
Length = 519
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 91 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 149
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 150 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 188
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 189 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 235
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 236 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKIEVS 270
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 271 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 329
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 330 AAIPL---HGQMSQNKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 386
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 387 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 419
>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 419
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 196/410 (47%), Gaps = 81/410 (19%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS---------- 50
+G SS P+Q I L +D+ + TG+GKT ++ALPI+Q LS
Sbjct: 19 LGYSSPTPIQA----HAIPVILAGQDIMAGAQTGTGKTAAFALPILQKLSECDVELSDTK 74
Query: 51 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
+++ +RALV+ PTR+LALQV FA GL+ + G
Sbjct: 75 QTVSLKPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYG----------------- 117
Query: 110 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREA 168
G+ D + L++ VDILVATPGRL+DH+ RG TL+ L +LV DE DR+L
Sbjct: 118 --GVSIDAQ--ADALKAGVDILVATPGRLLDHLR--RGSLTLKQLNFLVFDEADRMLDMG 171
Query: 169 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 228
++ + +L+ S + A TF PS F LS
Sbjct: 172 FKDEINAILKQVPSKRQTLLFSA-TFDPSVFA--------------------------LS 204
Query: 229 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 288
L QDP KL ++D + L + Y + +S +LIC L++S +
Sbjct: 205 KRLQQDP-KLIEVDKRNTLAAKVEQVVYAVDADRKS-ELICH----------LVKSKLWQ 252
Query: 289 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
+ ++F+ + + + G IK + + G Q+VR K L+ F++G+IQVLV++D
Sbjct: 253 QVLIFSRKKQGADNIAAKMVKAG---IKAQAFHGDLSQAVREKALQQFKQGEIQVLVATD 309
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
RG+DVE + VVNY+ P + YIHR GRT RAG G TL +++
Sbjct: 310 VAARGLDVEELKVVVNYELPFIAEDYIHRIGRTGRAGNAGLAITLYSEED 359
>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
Length = 524
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 95 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 153
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 154 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 192
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 239
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 240 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 274
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 275 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELSGNSFMIFCSTCNNTVKTALMLRALGL 333
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 334 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 390
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 391 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 423
>gi|422293255|gb|EKU20555.1| dead deah box rna, partial [Nannochloropsis gaditana CCMP526]
Length = 414
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 188/394 (47%), Gaps = 62/394 (15%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
+ Q+ I L RD+ + TGSGKT ++ALP++Q L + R L A+V+ PTR+LA Q
Sbjct: 59 GIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQR-LFAVVLAPTRELAFQ 117
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
+ +VF A+ ++GL VG + + L ++P ++
Sbjct: 118 IHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPH---------------------VV 156
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL+DH+ T+GF + +LV+DE DR+L ++ + +L + + R
Sbjct: 157 VATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRR---- 212
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
++ SAT+T KL + L P+ +
Sbjct: 213 --------------------------------TLLFSATMTSKVAKLQRASLTDPVKVEA 240
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
+ ++ P L L +K K YL L + +VF ++ + RL LL + G
Sbjct: 241 SD-KFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLG 299
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
I + G Q R L F+ G+ +L+++D +RG+D+ V+ V+N+D P++
Sbjct: 300 FGAICL---HGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHG 356
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
K YIHR GRTARAG+ GR ++ + +V+ +++L
Sbjct: 357 KDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRL 390
>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
malayi]
gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
[Brugia malayi]
Length = 462
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 64/382 (16%)
Query: 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83
+RD+ + TGSGKT ++A+PI+Q L + L ALV+ PTR+LA Q+ + F A+ ++
Sbjct: 61 KRDIIGLAETGSGKTAAFAIPILQALLETPQK-LFALVLTPTRELAFQIGEQFEALGASI 119
Query: 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 143
G+ + + VG + L KRP ++VATPGRL+DH+
Sbjct: 120 GILIAVIVGGVDTVTQSLALAKRP---------------------HVIVATPGRLVDHLE 158
Query: 144 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 203
T+GF L L YLV+DE DR+L ++ L +L++ + T+L
Sbjct: 159 NTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERR-------TYL-------- 203
Query: 204 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 263
SAT+T+ KL + L+ P+ + ++Y+ ++L+
Sbjct: 204 -----------------------YSATMTKKVAKLERASLNDPVRIEVS-SKYQTVDKLK 239
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
Y + K K YL+ +L + + IVF S+ S + +L G + + G
Sbjct: 240 QYYIFIPYKYKEAYLIYILNEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPL---HGQ 296
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q+ R +L F+ VLV +D +RG+D+ V+ V+NYD P K Y+HR GRTAR
Sbjct: 297 MSQAKRLGSLNKFKSKASTVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTAR 356
Query: 384 AGQLGRCFTLLHKDEVKRFKKL 405
AG+ G T + + +V+ ++K+
Sbjct: 357 AGRSGVAITFVTQYDVEIYQKI 378
>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
gi|384475998|gb|AFH89832.1| FI20110p1 [Drosophila melanogaster]
Length = 507
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 145
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 146 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 184
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 185 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 231
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 232 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 266
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 267 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 325
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 326 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 382
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 383 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
Length = 519
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 91 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 149
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 150 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 188
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 189 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 235
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 236 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 270
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 271 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 329
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 330 AAIPL---HGQMSQNKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 386
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 387 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 419
>gi|388502288|gb|AFK39210.1| unknown [Lotus japonicus]
Length = 460
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 193/382 (50%), Gaps = 62/382 (16%)
Query: 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83
+RD+ + TGSGKT ++ALPI+Q L R L ALV+ PTR+LA Q+ + F A+ ++
Sbjct: 47 KRDIIGLAETGSGKTGAFALPILQALLATPQR-LFALVLTPTRELAYQISEQFEALGSSI 105
Query: 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 143
G+ + VG + + L K+P I++ATPGRL+DH+
Sbjct: 106 GVKCAVIVGGMDMMSQSIALAKKPH---------------------IVIATPGRLVDHLE 144
Query: 144 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 203
T+GF+L + YLV+DE DR+L ++ L +L++ S ST+L
Sbjct: 145 NTKGFSLRSIQYLVMDEADRILNMDFEVDLDKILKILPPS-----STRSTYL-------- 191
Query: 204 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 263
SAT+T+ KL + L P+ + + +Y ++L+
Sbjct: 192 -----------------------YSATMTKKVAKLQRASLRDPIKIEVSD-KYATVDKLQ 227
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
L SK K +YLV++L + + IVF S+ +T RL L + G + + G
Sbjct: 228 QTYLFIPSKFKDVYLVSILNDMSGKSIIVFASTCTTTLRLALLTRNLGFTTVPL---HGQ 284
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q+ R L F+ +L+++D +RG+D+ V+ V+NYD P + K YIHR GRTAR
Sbjct: 285 MSQTKRLGALNKFKGKARSILIATDVASRGLDIPHVDVVINYDIPNHSKDYIHRVGRTAR 344
Query: 384 AGQLGRCFTLLHKDEVKRFKKL 405
AG+ G+ T + + +++ ++++
Sbjct: 345 AGRSGKSITFVTQYDIELYQRI 366
>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 480
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 183/394 (46%), Gaps = 67/394 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q ++I L RD+ + TGSGKT ++ALP++Q L + + L
Sbjct: 70 LGYTKPTPIQA----QSIPHALANRDIIGLAETGSGKTAAFALPVIQALLEKP-QAFFGL 124
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ F A+ + L + VG + + L K+P
Sbjct: 125 VLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPH------------ 172
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++VATPGRL+DH+ T+GF+L L YLV+DE DRLL + + +L+
Sbjct: 173 ---------VIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILK-- 221
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
F+P RR + SAT++ L +
Sbjct: 222 -------------FIPRE-------RRT----------------FLFSATMSSKIESLQR 245
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L P+ ++ +Y+ L Y L +LK YLV L +K +VFT +V T
Sbjct: 246 ASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQLKDTYLVYLANEFAGKKLVVFTRTVSET 305
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RL LL G I + G Q+ R L FR G+ +LV++D RG+D+ V+
Sbjct: 306 QRLAILLRTLGFGAIPLH---GQLNQTARLGALNKFRAGERSILVATDVAARGLDIPLVD 362
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V+N+D KT++HR GRTARAG+ G +L+
Sbjct: 363 VVINHDLAQDSKTHVHRIGRTARAGKSGIALSLV 396
>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
Length = 507
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 145
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 146 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 184
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 185 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 231
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 232 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 266
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 267 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 325
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 326 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 382
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 383 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
Length = 522
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 94 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 152
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 153 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 191
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 192 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 238
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 239 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEV- 272
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 273 SNKYQTVEQLQQSYLFIPVKYKDVYLVHILNDLAGNSFMIFCSTCNNTVKTALMLRALGL 332
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 333 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 389
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 390 DYIHRVGRTARAGRSGKAITLVTQYDIELYQRI 422
>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
Length = 753
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 129/454 (28%), Positives = 215/454 (47%), Gaps = 94/454 (20%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRA 59
G S P+Q Q I L +D+C + TG+GKT ++ LPI++ + R C R
Sbjct: 162 GYSDPTPIQ----QACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRV 217
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV++PTR+LA+QV VF ++ + L V L G G+ ++
Sbjct: 218 LVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAG-------------------GLDLKAQE 258
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTL----------------------EHLCYLV 157
L+S D++VATPGRL+DH++ + F L ++L LV
Sbjct: 259 AA--LRSGPDVVVATPGRLIDHLHNSPSFNLASIEVFLSLEKEKFRNSEIQESKNLKVLV 316
Query: 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 217
+DE DR+L EA++ + +++L ENR +
Sbjct: 317 LDEADRMLEEAFRDQMNELIRLC---AENRQT---------------------------- 345
Query: 218 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLK 274
++ SAT+T++ ++LA + L P+ + E T KL + + E+ +
Sbjct: 346 -------LLFSATMTEEIDELASMSLKKPVKIFINENTDTALKLRQEFIRIRAGRETDRE 398
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
+ + AL+ + IVF + + R+ LL G IK+ + Q R ++L
Sbjct: 399 SM-VAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLG---IKVGQMQSSLTQGQRIESLS 454
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F++G+I VLVS+D +RG+D+EGV V+N + P IK YIHR GRTARAG+ GR +L+
Sbjct: 455 KFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLV 514
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 428
++E K K+++ + + + ++E+ R
Sbjct: 515 GEEERKLLKEIVNSNADRTLKQRLVAPEVVEAYR 548
>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
Length = 518
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 95 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRYF-ALVLTPTRELAFQI 153
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 154 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 192
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 239
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 240 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 274
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 275 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 333
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 334 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 390
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ T++ + +++ ++++
Sbjct: 391 DYIHRVGRTARAGRSGKAITIVSQYDIELYQRI 423
>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
Length = 518
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 95 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRYF-ALVLTPTRELAFQI 153
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 154 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 192
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 239
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP RR + SAT+T+ KL + L P+ +
Sbjct: 240 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 274
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 275 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 333
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 334 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 390
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ T++ + +++ ++++
Sbjct: 391 DYIHRVGRTARAGRSGKAITIVSQYDIELYQRI 423
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 183/399 (45%), Gaps = 63/399 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
+ A+ E I L RDL + TGSGKT ++ALPI+Q L ++ LV+ PTR
Sbjct: 72 YKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFF-GLVLAPTR 130
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ F + + + + VG + + L K+P
Sbjct: 131 ELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH------------------ 172
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 173 ---IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKV------- 222
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
LP RR + SAT++ L + L +P
Sbjct: 223 --------LPRE-------RRT----------------YLFSATMSSKVESLQRASLQNP 251
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
L + ++++ L+ + K K LYLV LL + CI+F +V T RL
Sbjct: 252 LRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFF 311
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G I + G QS R L FR +LV++D RG+D+ V+ V+N+D
Sbjct: 312 LRLLGFGAIPLH---GQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFD 368
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P KT+IHR GRTARAG+ G + + +V+ + ++
Sbjct: 369 LPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRI 407
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 183/399 (45%), Gaps = 63/399 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
+ A+ E I L RDL + TGSGKT ++ALPI+Q L ++ LV+ PTR
Sbjct: 72 YKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFF-GLVLAPTR 130
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ F + + + + VG + + L K+P
Sbjct: 131 ELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH------------------ 172
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 173 ---IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKV------- 222
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
LP RR + SAT++ L + L +P
Sbjct: 223 --------LPRE-------RRT----------------YLFSATMSSKVESLQRASLQNP 251
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
L + ++++ L+ + K K LYLV LL + CI+F +V T RL
Sbjct: 252 LRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFF 311
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G I + G QS R L FR +LV++D RG+D+ V+ V+N+D
Sbjct: 312 LRLLGFGAIPLH---GQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFD 368
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P KT+IHR GRTARAG+ G + + +V+ + ++
Sbjct: 369 LPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRI 407
>gi|119618949|gb|EAW98543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sapiens]
Length = 291
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 132/229 (57%), Gaps = 16/229 (6%)
Query: 218 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLE 263
P L K++ SATLTQ+P KL QL LH P +TG +Y P L
Sbjct: 46 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLT 105
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
+ + C KPL ++ L+ +G + + FT+S E++HRL L+ FG + + E+S
Sbjct: 106 HHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSR 163
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
R LK F +GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTAR
Sbjct: 164 YGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTAR 223
Query: 384 AGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
AG+ G+ FTLL K + +RF ++L +A H + S L++ L P Y+
Sbjct: 224 AGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 272
>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
Length = 478
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 190/405 (46%), Gaps = 66/405 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
+ A+ E I L RDL + TGSGKT ++ALPI+Q L ++ + LV+ PTR
Sbjct: 72 YKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPILQALMDKP-QPFFGLVLAPTR 130
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ + F A+ + + + VG + + + KRP
Sbjct: 131 ELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPH------------------ 172
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + + +L++ E
Sbjct: 173 ---IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVL--PRER 227
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
R TFL SAT++ L + L +P
Sbjct: 228 R-----TFL-------------------------------FSATMSSKVEGLQRASLSNP 251
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
L ++ +Y+ L Y L K K ++L+ LL + I+FT +V T RL L
Sbjct: 252 LRVSVSSNKYQTVSTLLQYYLFIPHKHKDVHLIWLLNEHVGQSVIIFTRTVHETMRLTIL 311
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
G I + G QS R L FR +L+++D RG+D+ V+ V+NYD
Sbjct: 312 ARALGFGAIALH---GQLSQSARLGALGKFRSRSRDILIATDVAARGLDIPSVDLVLNYD 368
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQK 408
A KT++HR GRTARAG+ G+ +L+ + +V+ R +K L +
Sbjct: 369 LAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRIEKALDR 413
>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
Length = 494
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/390 (30%), Positives = 184/390 (47%), Gaps = 63/390 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + I P L RD+ + TGSGKT ++A+PI+ L + A V+ PTR
Sbjct: 92 FDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILNRLWEDK-QPYYACVLAPTR 150
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q K+ F ++ +G+ VG ++ D+ EL+++P
Sbjct: 151 ELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRKPH------------------ 192
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++ +
Sbjct: 193 ---IIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPT---- 245
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
D +T+L SAT+T +KL + L P
Sbjct: 246 --QDRTTYL-------------------------------FSATMTSKIDKLQRASLTEP 272
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ +Y+ + L ++ S LK YL+ LL + I+FT + + RL L
Sbjct: 273 VKCAVS-NKYQTVDTLVQTLMVVPSGLKNTYLIYLLNENIGKTVIIFTRTKANAERLSAL 331
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
N L G Q+ R+ L F+ G+ +LV++D RG+D+ V+ V+NYD
Sbjct: 332 CNL---LEFNATALHGDLNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYD 388
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
P K+YIHR GRTARAG+ G+ +L+ +
Sbjct: 389 IPVDSKSYIHRVGRTARAGRSGKSISLVSQ 418
>gi|170579262|ref|XP_001894751.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158598525|gb|EDP36400.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 527
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 196/399 (49%), Gaps = 65/399 (16%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83
RDL I+SPTGSGKTL Y +PI+ L + + CL AL+V+P ++L Q++ F
Sbjct: 118 RDLVISSPTGSGKTLCYVIPILNALRACTMMDCLFALIVVPVQNLVDQIEKEFKKYNVFN 177
Query: 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI- 142
V L G + E Q+L+SA +I++ATPGRLM+HI
Sbjct: 178 VCIVSLC-GSHDVNVE---------------------RQQLESA-NIVIATPGRLMEHIT 214
Query: 143 --NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 200
+ FT HL YLVVDE DR+ A WL L+ + N N + + S
Sbjct: 215 DLDFPADFT--HLRYLVVDEADRMSHTARIEWLNN-LEAAANYNHNCVTIDDLYNASF-- 269
Query: 201 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LF-------LTTG 252
L K++LSATL+ D L + L HP LF + T
Sbjct: 270 ---------------------LQKILLSATLSLDVEDLHEWRLRHPCLFKAVKEDVVVTN 308
Query: 253 ETRYK---LPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLN 308
E +P L+ ++C++K KPL ++ +K ++F +S +++RL LL
Sbjct: 309 ELSLNSVIIPNSLKIEYIVCDTKFKPLVTHERIEGRKSWKKILIFVNSKLASYRLAVLLK 368
Query: 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
+ +++E S + R K L FR+G +VL+SSD ++RG+DV ++ V+NYD+P
Sbjct: 369 MLSVGKYQVEELSSNLFGNRRQKVLARFRKGTTRVLISSDVLSRGIDVMDIDVVINYDRP 428
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
K ++HR GRTAR G+ GR L+ E K F+ LQ
Sbjct: 429 LNEKLFVHRVGRTARCGKKGRAIFLITAKEKKDFQATLQ 467
>gi|37362659|ref|NP_011932.2| RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|81175193|sp|P38712.2|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|285809971|tpg|DAA06758.1| TPA: RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|392298867|gb|EIW09962.1| Rrp3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 501
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 198/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 107 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 165
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 166 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 204
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 252
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 253 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 287
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 288 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 343
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R +L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 344 LEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 403
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 458
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var.
grubii H99]
Length = 484
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 189/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ E I L +D+ + TGSGKT +++LPI+QTL + ALV+ PTR+LA Q+
Sbjct: 64 IQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENP-QPFFALVLAPTRELAYQI 122
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
++ +G+ + VG + + L KRP ++V
Sbjct: 123 SQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH---------------------VIV 161
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L+ L YLV+DE DRLL + + VL++ + +
Sbjct: 162 ATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKER-------N 214
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T KL + L+ P+ +
Sbjct: 215 TYL-------------------------------FSATMTTKVAKLQRASLNKPVRVEV- 242
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y L + L+ K K YL+ L L I+FT +V + RL +L G
Sbjct: 243 SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSSMIIFTRTVADSQRLSIILRRLGF 302
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS+R +L F+ G +LV++D +RG+D+ V+ V+NYD P K
Sbjct: 303 PAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSK 359
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 360 DYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>gi|367007110|ref|XP_003688285.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
gi|357526593|emb|CCE65851.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
Length = 755
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 191/401 (47%), Gaps = 73/401 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 58
+G + P+Q A TI GL +D+ + TGSGKT ++ +PI++ L + + R
Sbjct: 238 LGYTKPSPIQSA----TIPIGLLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPANIASTR 293
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+V+ PTR+LA+QV DV I V GL+ GLAVG ++ + EL RP
Sbjct: 294 VIVLTPTRELAIQVSDVGKRIGKYVNGLTFGLAVGGLNLRQQEQELKTRP---------- 343
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
D+++ATPGR +DHI + F ++ + LV+DE DR+L + +Q L ++
Sbjct: 344 -----------DVVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQEELNEIM 392
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
L LP+ +L + SAT+ +
Sbjct: 393 SL---------------LPTKRQTL-----------------------LFSATMNSKIKQ 414
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKP---LYLVALLQSLGEEKCIVF 293
L L L P+ + + + + I + LKP YL+ L S +++ +VF
Sbjct: 415 LISLSLRRPVRIMINPPKQAAARLTQEFVRIRKRDLLKPALLYYLIRKLDSSSQKRIVVF 474
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
S E HRL ++ G L +K+ E G Q R +++ F+ ++ VL+ +D +RG
Sbjct: 475 VSRKEMAHRLRIIM---GLLGMKVAELHGSLTQEQRLQSVNQFKSLEVPVLICTDLASRG 531
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 532 LDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 572
>gi|402590562|gb|EJW84492.1| DEAD box ATP-dependent RNA helicase [Wuchereria bancrofti]
Length = 462
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 186/382 (48%), Gaps = 64/382 (16%)
Query: 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83
+RD+ + TGSGKT ++A+PI+Q L + L ALV+ PTR+LA Q+ + F A+ ++
Sbjct: 61 KRDIIGLAETGSGKTAAFAIPILQALLETPQK-LFALVLTPTRELAFQIGEQFEALGASI 119
Query: 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 143
G+ + + VG + L KRP ++VATPGRL+DH+
Sbjct: 120 GILIAVIVGGIDTVTQSLALAKRP---------------------HVIVATPGRLVDHLE 158
Query: 144 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 203
T+GF L L YLV+DE DR+L ++ L +L++ + T+L
Sbjct: 159 NTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERR-------TYL-------- 203
Query: 204 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 263
SAT+T+ KL + L P+ + ++Y+ ++L+
Sbjct: 204 -----------------------YSATMTKKVAKLERASLVDPVRIEVS-SKYQTVDKLK 239
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
Y + K K YL+ +L + + IVF S+ S + +L G + + G
Sbjct: 240 QYYIFIPYKYKEAYLIYILNEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPL---HGQ 296
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q+ R +L F+ VLV +D +RG+D+ V+ V+NYD P K Y+HR GRTAR
Sbjct: 297 MSQAKRLGSLNKFKSKASTVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTAR 356
Query: 384 AGQLGRCFTLLHKDEVKRFKKL 405
AG+ G T + + +V+ ++K+
Sbjct: 357 AGRSGVAVTFVTQYDVEIYQKI 378
>gi|402083740|gb|EJT78758.1| ATP-dependent rRNA helicase RRP3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 485
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 194/420 (46%), Gaps = 72/420 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G P+Q + I L RD+ + TGSGKT ++ALPI+Q+L ++ + L L
Sbjct: 75 LGYKQPTPIQT----QAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLDKP-QPLFGL 129
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ F A+ + L + VG + + L K+P
Sbjct: 130 VLAPTRELAAQIGQAFEALGSLISLRCAVVVGGLDMVSQSIALGKKPH------------ 177
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L+
Sbjct: 178 ---------VVVATPGRLLDHLEKTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILK-- 226
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
FLP RR + SAT++ L +
Sbjct: 227 -------------FLPRE-------RRT----------------YLFSATMSSKVESLQR 250
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L PL ++ R K L LI K +YL+ L+ + I+FT +V
Sbjct: 251 ASLRDPLRVSVSSKREKTVATLLQNPLIIPHMHKDVYLIYLVNEFAGQTTIIFTRTVNEA 310
Query: 301 HRLCTLLN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
RL LL FG + + G QS+R L F+ +LV++D RG+D+
Sbjct: 311 QRLSILLRTLSFGAIPL-----HGQLSQSMRLGALNKFKAKSRDILVATDVAARGLDIPE 365
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA-DNDSCPIH 417
V+ V+NYD P TYIHR GRTARAG+ GR +++ + +V+ + ++ + A D P +
Sbjct: 366 VDLVINYDLPGDSMTYIHRVGRTARAGRSGRAISIVTQYDVELWMRIEKAALDGRKLPTY 425
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 210/434 (48%), Gaps = 79/434 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-------A 53
+G ++ P+Q A TI L +D+ N+ TGSGKT ++ +P+++ L R A
Sbjct: 201 LGFTTPTPIQAA----TIPVALLGKDVVGNAVTGSGKTAAFIIPMLERLMYRDRGKKAAA 256
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
RCL ++ PTR+LA+Q +V + +A + L VG S+ + + L RP
Sbjct: 257 TRCL---ILAPTRELAVQCYEVGSKLAAHTDIRFALVVGGLSVKAQETNLRTRP------ 307
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
D+++ATPGRL+DH+ + FTL+ L LV+DE DR+L
Sbjct: 308 ---------------DVVIATPGRLIDHLRNSPTFTLDALDILVLDEADRML-------- 344
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
E+ FSD T + I C P R M+ SAT+T
Sbjct: 345 -----------EDGFSDELTEI---------ITSC---------PTSRQT-MLFSATMTD 374
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALLQSLGEEKCI 291
++L ++ L+ P+ L R L+ + + K + LVAL + + + I
Sbjct: 375 SVDELVRMSLNKPVRLFVDPKRSTARGLLQEFVRVRAGKETERSALLVALCKRSFKARAI 434
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
+F S + H++ + + G +K E G Q R K L+ FR+G + L+++D +
Sbjct: 435 IFYRSKKLAHQMRIMFSLLG---MKCDELHGDLTQEQRLKALQQFRDGHVDYLMATDLAS 491
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
RG+D++G+ V+NYD P + Y+HR GRTARAG+ GR TL+ + + K K ++ + +
Sbjct: 492 RGLDIKGIETVINYDMPGTLSQYLHRVGRTARAGKKGRSVTLVGEADRKLLKAAIKHSSS 551
Query: 412 DSCPIH-SIPSSLI 424
+ H +P+ ++
Sbjct: 552 EDQVRHRQVPTEVL 565
>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 484
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 189/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ E I L +D+ + TGSGKT +++LPI+QTL + ALV+ PTR+LA Q+
Sbjct: 64 IQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENP-QPFFALVLAPTRELAYQI 122
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
++ +G+ + VG + + L KRP ++V
Sbjct: 123 SQQITSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH---------------------VIV 161
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L+ L YLV+DE DRLL + + VL++ + +
Sbjct: 162 ATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKER-------N 214
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T KL + L+ P+ +
Sbjct: 215 TYL-------------------------------FSATMTTKVAKLQRASLNKPVRVEV- 242
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y L + L+ K K YL+ L L I+FT +V + RL +L G
Sbjct: 243 SSKYSTVSTLLQHYLLLPLKNKDSYLLYLANELSSSSMIIFTRTVADSQRLSIILRRLGF 302
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS+R +L F+ G +LV++D +RG+D+ V+ V+NYD P K
Sbjct: 303 PAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSK 359
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 360 DYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>gi|160358662|sp|A6ZSX1.1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
[Saccharomyces cerevisiae RM11-1a]
gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
Length = 501
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 197/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 107 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 165
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 166 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 204
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 252
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 253 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 287
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 288 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 343
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 344 LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 403
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 458
>gi|143462274|sp|Q0CIQ3.2|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
Length = 445
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 188/400 (47%), Gaps = 69/400 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G ++ P+Q + I L RDL + TGSGKT ++ LP++Q L ++ + +L
Sbjct: 46 LGYTAPTPIQ----ERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKP-QQFHSL 100
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA Q+ A+ + + L +G + + L K+P
Sbjct: 101 ILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPH------------ 148
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L+L
Sbjct: 149 ---------VIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRL- 198
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
LP K K Y + SAT++ L +
Sbjct: 199 --------------LP------------------KRKTY------LFSATMSSKVESLQR 220
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L P+ ++ + L+SY L K K YLV LL + I+FT +V T
Sbjct: 221 ASLSDPVRVSVSTKNQTASKLLQSY-LFIPHKFKDFYLVYLLNERAGQMGIIFTRTVHET 279
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RL +L + G I I G QS R +L FR +L+++D RG+D+ V+
Sbjct: 280 QRLSIMLRNLGFPAIPIH---GQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVD 336
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
V+NYD P KTYIHR GRTARAG+ G F+ + + EV+
Sbjct: 337 YVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVE 376
>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
gi|365765178|gb|EHN06690.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 501
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 197/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 107 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 165
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 166 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 204
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 252
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 253 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 287
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 288 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 343
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 344 LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 403
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 458
>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
Length = 543
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 198/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 149 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 207
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 208 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 246
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 247 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 294
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 295 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 329
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 330 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 385
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R +L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 386 LEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 445
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 446 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 500
>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
Length = 501
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 197/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 107 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 165
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 166 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 204
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 252
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 253 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 287
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 288 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 343
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 344 LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 403
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 458
>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
Length = 501
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 197/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 107 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 165
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 166 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 204
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 252
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 253 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 287
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 288 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 343
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 344 LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 403
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 458
>gi|401625423|gb|EJS43432.1| rrp3p [Saccharomyces arboricola H-6]
Length = 500
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 202/419 (48%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ ++I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 106 IQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 164
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 165 KEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 203
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++ + + +
Sbjct: 204 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPT------QERT 257
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T +KL + L +P+
Sbjct: 258 TYL-------------------------------FSATMTSKIDKLQRASLTNPVKCAV- 285
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YLV LL + I+FT + + RL L N
Sbjct: 286 SNKYQTVDTLVQTLMVVPGGLKNTYLVYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 342
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 343 LEFSATALHGDLNQNQRMGALDLFKAGKRAILVATDVAARGLDIPSVDIVVNYDIPVDSK 402
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P ++ ++I +LR
Sbjct: 403 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKENVDKNIILTLR 457
>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 543
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 197/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 149 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 207
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 208 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 246
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 247 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 294
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 295 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 329
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 330 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 385
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 386 LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 445
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 446 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 500
>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
Length = 543
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 197/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 149 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 207
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 208 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 246
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 247 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 294
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 295 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 329
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 330 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 385
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 386 LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 445
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 446 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 500
>gi|349578615|dbj|GAA23780.1| K7_Rrp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 501
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 197/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 107 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 165
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 166 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------IVI 204
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 252
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 253 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 287
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 288 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 343
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 344 LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 403
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 458
>gi|449551073|gb|EMD42037.1| hypothetical protein CERSUDRAFT_129370 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 209/440 (47%), Gaps = 91/440 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-------A 53
+G ++ P+Q A TI L +D+ N+ TGSGKT ++ +P+++ L R A
Sbjct: 226 LGFNTPTPIQAA----TIPVALLGKDVVGNAVTGSGKTAAFIIPMLERLMYRDRGKKAAA 281
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
RCL V++PTR+LA+Q +V +A + L VG S+ + + L RP
Sbjct: 282 TRCL---VLVPTRELAVQCFEVGTKLAAHTDIRSCLVVGGLSLKAQEASLRTRP------ 332
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
D+++ATPGRL+DH+ + FTLE L LV+DE DR+L
Sbjct: 333 ---------------DVVIATPGRLIDHLRNSPTFTLEALDILVLDEADRML-------- 369
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
E+ FSD T + I+ C P R M+ SAT+T
Sbjct: 370 -----------EDGFSDELTEI---------IKSC---------PTSRQT-MLFSATMTD 399
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE--------SKLKPLYLVALLQSL 285
++L ++ L+ P+ L + P+R + L+ E + L AL +
Sbjct: 400 TVDELVRMSLNKPVRL------FVDPKRTTARGLVQEFVRVRAGKEAERSALLAALCKRT 453
Query: 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 345
K I+F S + H++ + + G +K E G Q R K L+ FR+G + L+
Sbjct: 454 FRTKSIIFFRSKKLAHQMRIVFSLLG---MKSDELHGDLSQEQRLKALQQFRDGTVDYLM 510
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++D +RG+D++G+ V+NYD P + Y+HR GRTARAG+ GR TL+ + + K K
Sbjct: 511 ATDLASRGLDIKGIETVINYDMPGQLALYLHRVGRTARAGKKGRSVTLVGEADRKMLKAA 570
Query: 406 LQKADNDSCPIH-SIPSSLI 424
++ A + H +P+ I
Sbjct: 571 IKHAAGEDQVRHRQVPAEAI 590
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 207/435 (47%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-------A 53
+G ++ P+Q A TI L +D+ N+ TGSGKT ++ +P+++ L R A
Sbjct: 205 LGFTTPTPIQAA----TIPVALLGKDVVGNAVTGSGKTAAFIIPMLERLMYRDRGKKAAA 260
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
RCL V++PTR+L +Q +V +A + L VG SI + + L RP
Sbjct: 261 TRCL---VLVPTRELGVQCFEVGTKLAAHTDIRFALVVGGLSIKAQEANLRTRP------ 311
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
D+++ATPGRL+DHI + FTL+ L LV+DE DR+L
Sbjct: 312 ---------------DVVIATPGRLIDHIRNSPTFTLDALDILVLDEADRML-------- 348
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
E+ F+D T + I+ C P R M+ SAT+T
Sbjct: 349 -----------EDGFADELTEI---------IKSC---------PTSRQT-MLFSATMTD 378
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALLQSLGEEKCI 291
++L ++ L+ P+ L R L+ + + K + LVAL + + + I
Sbjct: 379 SVDELVRMSLNKPVRLFVDPKRATARGLLQEFVRVRAGKEAERSALLVALCKRTFKSRVI 438
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
+F S + H++ + F L +K E G Q R K L+ FR+G + L+++D +
Sbjct: 439 IFFRSKKLAHQMRIV---FRLLDMKCDELHGDLSQEQRLKALQQFRDGHVDYLMATDLAS 495
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
RG+D++G+ V+NYD P + Y+HR GRTARAG+ GR TL+ + + K K ++ +
Sbjct: 496 RGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAAIKHSSG 555
Query: 412 --DSCPIHSIPSSLI 424
D +P ++
Sbjct: 556 GEDQIRHRQVPQEVV 570
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 189/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ E I L +D+ + TGSGKT +++LPI+QTL + ALV+ PTR+LA Q+
Sbjct: 64 IQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENP-QPFFALVLAPTRELAYQI 122
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
++ +G+ + VG + + L KRP I+V
Sbjct: 123 SQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH---------------------IIV 161
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L+ L YLV+DE DRLL + + +L++ + +
Sbjct: 162 ATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKER-------N 214
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T KL + L+ P+ +
Sbjct: 215 TYL-------------------------------FSATMTTKVAKLQRASLNKPVRVEV- 242
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y L + L+ K K YL+ L L ++FT +V + RL +L G
Sbjct: 243 SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSSMMIFTRTVADSQRLSIILRRLGF 302
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS+R +L F+ G +LV++D +RG+D+ V+ V+NYD P K
Sbjct: 303 PAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSK 359
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 360 DYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
Length = 463
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 186/382 (48%), Gaps = 64/382 (16%)
Query: 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83
+RD+ + TGSGKT ++A+PI+Q L + L ALV+ PTR+LA Q+ + F A+ ++
Sbjct: 61 KRDIIGLAETGSGKTAAFAIPILQALLETPQK-LFALVLTPTRELAFQIGEQFEALGASI 119
Query: 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 143
G+ + + VG + L KRP ++VATPGRL+DH+
Sbjct: 120 GILIAVIVGGVDTVTQSLALAKRPH---------------------VIVATPGRLVDHLE 158
Query: 144 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 203
T+GF L L YLV+DE DR+L ++ + +L++ + T+L
Sbjct: 159 NTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIPKERR-------TYL-------- 203
Query: 204 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 263
SAT+T+ KL + L+ P+ + ++Y+ ++L+
Sbjct: 204 -----------------------YSATMTKKVAKLERASLNDPVRIEVS-SKYQTVDKLK 239
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
Y + K K YLV +L + + IVF S+ S R +L G + + G
Sbjct: 240 QYYIFIPYKYKEAYLVYILNEMAGQTAIVFCSTCVSALRTALMLRKLGFGAVPL---HGQ 296
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q+ R +L F+ L+ +D +RG+D+ V+ V+NYD P K Y+HR GRTAR
Sbjct: 297 MSQAKRLGSLNKFKSKTSTTLICTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTAR 356
Query: 384 AGQLGRCFTLLHKDEVKRFKKL 405
AG+ G T + + +V+ ++++
Sbjct: 357 AGRSGVAVTFVTQYDVEIYQRI 378
>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
Length = 434
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 190/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +ETI L RD+ + TGSGKT ++ +P++Q L + + + L + PTR+LA Q+
Sbjct: 36 IQRETIPWALKGRDIIGLAQTGSGKTGAFVIPVLQKLLEQP-QGIFCLCIAPTRELAFQI 94
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F A+ +G+ + VG + +L K+P I++
Sbjct: 95 AEQFNALGATIGVKTCVLVGGIDSMTQSLQLAKKPH---------------------III 133
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
+PGR++ H+ T+GF L + Y ++DE DRL ++ + +L++ + +
Sbjct: 134 GSPGRIIFHLENTKGFNLRSIKYFIMDEADRLFGADFEEEVNNILKVIPKER-------N 186
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
TFL SAT+T KL + L +P+ +
Sbjct: 187 TFL-------------------------------FSATMTSKVAKLQRASLVNPVKIQVA 215
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T+Y+ + L L K K YLV +L L I+FTS+ S++++ +L + G
Sbjct: 216 -TKYQTVDTLIQQYLFIPFKYKECYLVYILNELAGNLTIIFTSTCASSNKVTLMLRNLGL 274
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I I +G Q+ R +L F++G +LV++D RG+D+ V+ V+NYD P K
Sbjct: 275 AAIPI---NGDMDQAKRLASLSKFKQGTKSILVATDVAARGLDIPMVDLVINYDVPTNSK 331
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG GR TL+ + +V+ ++++
Sbjct: 332 EYIHRVGRTARAGNSGRAITLVTQYDVEMYQRI 364
>gi|389642833|ref|XP_003719049.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
gi|351641602|gb|EHA49465.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
Length = 562
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 181/390 (46%), Gaps = 67/390 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 154 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 212
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ F A+ ++ L + VG + + + L K+P
Sbjct: 213 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH------------------ 254
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 255 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 303
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
FLP RR + SAT++ L + L P
Sbjct: 304 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 333
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 334 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 393
Query: 307 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 394 LRTLSFGAIPL-----HGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 448
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+D P TYIHR GRTARAG+ GR +++
Sbjct: 449 FDMPQDSMTYIHRVGRTARAGRSGRAISII 478
>gi|152060562|sp|A4RGD1.1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 538
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 181/390 (46%), Gaps = 67/390 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 130 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 188
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ F A+ ++ L + VG + + + L K+P
Sbjct: 189 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH------------------ 230
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 231 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 279
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
FLP RR + SAT++ L + L P
Sbjct: 280 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 309
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 310 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 369
Query: 307 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 370 LRTLSFGAIPL-----HGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 424
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+D P TYIHR GRTARAG+ GR +++
Sbjct: 425 FDMPQDSMTYIHRVGRTARAGRSGRAISII 454
>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 226 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 281
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 282 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 324
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 325 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 380
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 381 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 402
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 403 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 456
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 457 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 513
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 514 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 553
>gi|407035126|gb|EKE37546.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 500
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 213/447 (47%), Gaps = 64/447 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
GI L+P+Q V Q + D+ + +PTGSGKTL+Y LP+++ L N ++ ++
Sbjct: 84 GIKELYPMQKIVQQFIFST---DTDIAVRAPTGSGKTLAYTLPLLK-LINPLFNHIQVVI 139
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
++PT LALQV +V + + ++ + +G+SSI E S C
Sbjct: 140 LIPTLPLALQVSNVMKPLLKTINCNL-VCLGESSIEKETS------------CNS----- 181
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
++V TP RL++H++ + L+ L YL+ DETD+LL +P + L
Sbjct: 182 -------HVIVTTPIRLLNHLSKS-TLDLKWLQYLIYDETDKLLT------IPALFPLLN 227
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
+ S P +KT + V + + ++ SATL+ P QL
Sbjct: 228 IIKKQYIS------PQYMVDIKTGKSLNVFSSSTN----QFRSLLFSATLSSSPKAFKQL 277
Query: 242 DLHHPLFLT-----------TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 290
++ PL LT +T+Y LP +E+ K L ++ LL++ G K
Sbjct: 278 QMNKPLLLTFDDSFVRDINEITQTKYVLPSTIENRYTPVLPIEKDLVVLELLKTSG--KS 335
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL----QRQSVRSKTLKAFREGKIQVLVS 346
I+F +S + L L+ E K K+ G +Q + K +K I V ++
Sbjct: 336 IIFCNSNNTAFVLFRLIQEMAEFIGKEKKEIGCIISSMKQKEKLKVIKRVENDSINVFIT 395
Query: 347 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406
+D M+RG+D++G+ V+N+D P + Y+HRAGRT RAG G C T++ +EV K L
Sbjct: 396 TDVMSRGIDIKGLKTVINFDCPVSTQLYVHRAGRTGRAGNEGICHTIVLTNEVGNLKGYL 455
Query: 407 QKADNDSCPIHSI-PSSLIESLRPVYK 432
+K +N+ + I SLI+S + K
Sbjct: 456 KKMNNELHKVSVIVEESLIKSYNKITK 482
>gi|167379929|ref|XP_001735325.1| ATP-dependent RNA helicase DBP6 [Entamoeba dispar SAW760]
gi|165902737|gb|EDR28474.1| ATP-dependent RNA helicase DBP6, putative [Entamoeba dispar SAW760]
Length = 502
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 211/445 (47%), Gaps = 66/445 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
GI L+P+Q V Q + D+ + +PTGSGKTL+Y LP+++ L N ++ +V
Sbjct: 86 GIKELYPMQKIVQQFIFTT---DTDIAVRAPTGSGKTLAYTLPLLK-LINPLFNHIQTVV 141
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
++PT L LQV +V + + ++ ++G+SSI E S C
Sbjct: 142 LIPTLPLVLQVSNVMKPLLKTINCNLT-SLGESSIEKETS------------CNS----- 183
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
++V TP RL++H++ + L+ L YL+ DETD+LL +P + L
Sbjct: 184 -------HVIVTTPIRLLNHLSKS-TLDLKWLKYLIYDETDKLLT------IPALFPLLN 229
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
+ S P +KT + V + + ++ SATL+ P QL
Sbjct: 230 MIKKQYIS------PQYMVDIKTGKSLNVFSSSTN----QFRSLLFSATLSSSPKAFKQL 279
Query: 242 DLHHPLFLT-----------TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 290
++ PL LT +T+Y LP +E+ K L ++ LL++ G K
Sbjct: 280 QMNKPLLLTFDDSFVRDINEITQTKYVLPSTIENRYTPVLPVEKDLVVLELLKTSG--KS 337
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL----QRQSVRSKTLKAFREGKIQVLVS 346
I+F +S + L L+ E K K+ G +Q + K +K I V V+
Sbjct: 338 IIFCNSNNTAFVLFRLIQEMAEFIGKNKKEIGCIISSMKQKEKLKVIKKVENDSIDVFVT 397
Query: 347 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406
+D M+RG+D++ + V+N+D P + Y+HRAGRT RAG G C T++ +EV K L
Sbjct: 398 TDLMSRGIDIKRLKTVINFDCPVSTQLYVHRAGRTGRAGNEGICHTIVLTNEVGNLKSYL 457
Query: 407 QKADNDSCPIHSIPSSLIESLRPVY 431
+K +N+ +H +P + ESL Y
Sbjct: 458 KKMNNE---LHKVPVIVEESLTKSY 479
>gi|256087842|ref|XP_002580072.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|350646373|emb|CCD58966.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
Length = 454
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 200/410 (48%), Gaps = 71/410 (17%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75
+ I L ++D+ + TGSGKT ++A+PI+Q L ++ R AL++ PTR+LALQVK +
Sbjct: 33 KAIPAALRKKDIVGLAETGSGKTAAFAIPILQDLLSKP-RHNFALILTPTRELALQVKCL 91
Query: 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135
F + GL V VG + D++ +L KR K ++V TP
Sbjct: 92 FMELGDKFGLKVVCLVGGQHVEDQVRDL-KRLKFH-------------------VIVGTP 131
Query: 136 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
GR++ H+ T+ L H+ Y V+DE D++L + ++ L ++
Sbjct: 132 GRVVYHLENTKELRLNHVRYFVLDEADQMLEDTFEQQLAFIIT----------------- 174
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
K +P + SAT+TQ+ +K+ ++ P+ L ++
Sbjct: 175 ---------------------KLHPNKQTFLYSATMTQNVDKIRKVCTKSPVILEVS-SK 212
Query: 256 YKLPERLESYKLICESKLKPLYLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
Y ++L+ + K K YL+ LL +S + + I+FTS+ + R+ +L +
Sbjct: 213 YSKVDKLDHAFVFIPDKEKDFYLIYLLLSSKSADKSRSIIFTSTWRESFRIVAMLKSLAD 272
Query: 313 -LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KP 368
+ +G+ +Q R +L FR G++ +LV++D +RG+D V+ V+NYD +P
Sbjct: 273 VISAASAPLNGVMQQDKRQSSLFDFRTGRVSILVATDLASRGLDFPDVDLVINYDVPRRP 332
Query: 369 AY---IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP 415
++ K YIHR GRTARAG+ GR T + V R K ++ A N+ P
Sbjct: 333 SWSDSAKAYIHRVGRTARAGRHGRAITFVTPYSVTRLKA-IESALNERIP 381
>gi|392297967|gb|EIW09066.1| Drs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 748
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 252 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 307
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 308 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 350
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 351 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 406
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 407 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 428
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 429 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 482
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 483 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 539
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 540 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 579
>gi|67471357|ref|XP_651630.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56468397|gb|EAL46244.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449702889|gb|EMD43437.1| ATP-dependent RNA helicase DBP6, putative [Entamoeba histolytica
KU27]
Length = 500
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 213/447 (47%), Gaps = 64/447 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
GI L+P+Q V Q + D+ + +PTGSGKTL+Y LP+++ L N ++ ++
Sbjct: 84 GIKELYPMQKIVQQFIFST---DTDIAVRAPTGSGKTLAYTLPLLK-LINPLFNHIQVVI 139
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
++PT LALQV +V + + ++ + +G+SSI E S C
Sbjct: 140 LIPTLPLALQVSNVMKPLLKTINCNL-VCLGESSIEKETS------------CNS----- 181
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
++V TP RL++H++ + L+ L YL+ DETD+LL +P + L
Sbjct: 182 -------HVIVTTPIRLLNHLSKS-TLDLKWLQYLIYDETDKLLT------IPALFPLLN 227
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
+ S P +KT + V + + ++ SATL+ P QL
Sbjct: 228 IIKKQYIS------PQYMVDIKTGKSLNVFSSSTN----QFRSLLFSATLSSSPKAFKQL 277
Query: 242 DLHHPLFLT-----------TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 290
++ PL LT +T+Y LP +E+ K L ++ LL++ G K
Sbjct: 278 QMNKPLLLTFDDSFVRDINEITQTKYVLPSTIENRYTPVLPIEKDLVVLELLKTSG--KS 335
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL----QRQSVRSKTLKAFREGKIQVLVS 346
I+F +S + L L+ E K K+ G +Q + K +K I V ++
Sbjct: 336 IIFCNSNNTAFVLFRLIQEMAEFIGKDKKEIGCIISSMKQKEKLKVIKRVENDSINVFIT 395
Query: 347 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406
+D M+RG+D++G+ V+N+D P + Y+HRAGRT RAG G C T++ +EV K L
Sbjct: 396 TDLMSRGIDIKGLKTVINFDCPVSTQLYVHRAGRTGRAGNEGICHTIVLTNEVGNLKSYL 455
Query: 407 QKADNDSCPIHSI-PSSLIESLRPVYK 432
+K +N+ + I SLI+S + K
Sbjct: 456 KKMNNELHKVSVIVEESLIKSYNKITK 482
>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
Length = 751
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 255 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 310
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 311 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 353
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 354 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 409
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 410 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 431
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 432 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 485
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 486 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 542
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 543 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 582
>gi|160380652|sp|A7A0P8.1|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 754
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 258 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 313
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 314 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 356
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 357 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 412
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 413 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 434
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 435 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 488
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 489 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 545
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 546 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 585
>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
gi|1706521|sp|P32892.2|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
Length = 752
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 256 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 311
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 312 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 354
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 355 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 410
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 411 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 432
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 433 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 486
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 487 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 543
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 544 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
>gi|349579719|dbj|GAA24880.1| K7_Drs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 756
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 260 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 315
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 316 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 358
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 359 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 414
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 415 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 436
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 437 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 490
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 491 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 547
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 548 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 587
>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
98AG31]
Length = 486
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 189/399 (47%), Gaps = 64/399 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + E+I L +D+ + TGSGKT ++ALP++Q+L + + A V+ PTR
Sbjct: 79 FKTPTPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVLQSLWD-SPSAFFACVLAPTR 137
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ F A+ +G+ + VG + + L KRP
Sbjct: 138 ELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSKRPH------------------ 179
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
++VATPGRL DH+ T+GF+L +L +L++DE DRLL + + +L++ + +
Sbjct: 180 ---VIVATPGRLHDHLEHTKGFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERK- 235
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
T+L SAT+T KL + L++P
Sbjct: 236 ------TYL-------------------------------FSATMTTKVAKLQRASLNNP 258
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ + + +++Y L K K YLV L L + IVFT +V RL +
Sbjct: 259 VKVEVSAKYDTVSALVQTY-LFLPFKHKDTYLVYLANELSGKSLIVFTRTVHDASRLSLI 317
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G + + G QS R L F+ G +LV++D +RG+D+ V+ V+N+D
Sbjct: 318 LRTLGFPAVPLH---GQLSQSARLGALNKFKSGDQSLLVATDVASRGLDIPAVDCVINFD 374
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P K YIHR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 375 LPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRI 413
>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
Length = 754
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 258 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 313
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 314 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 356
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 357 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 412
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 413 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 434
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 435 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 488
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 489 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 545
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 546 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 585
>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
Length = 755
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 259 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 314
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 315 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 357
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 358 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 413
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 414 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 435
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 436 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 489
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 490 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 546
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 547 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 586
>gi|408395320|gb|EKJ74502.1| hypothetical protein FPSE_05252 [Fusarium pseudograminearum CS3096]
Length = 487
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 180/382 (47%), Gaps = 63/382 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +++I L RD+ + TGSGKT ++ALP++Q L ++ + L LV+ PTR+LA Q+
Sbjct: 86 IQEQSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKP-QPLFGLVLAPTRELATQI 144
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
F A+ + L + VG + + L K+P I+V
Sbjct: 145 GQAFEALGSLISLRCAVIVGGLDMVPQSIALGKKPH---------------------IIV 183
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF+L L YL++DE DRLL + + +L+
Sbjct: 184 ATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILK-------------- 229
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
F+P RR + SAT++ L + L P+ ++
Sbjct: 230 -FVPRE-------RRT----------------YLFSATISSKIESLQRASLRDPVKVSIS 265
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ L + L K ++L+ L+ + IVFT +V T R+ LL G
Sbjct: 266 SNKYQTVSTLLQHYLFIPHPQKDVHLIYLINEHAGQSTIVFTRTVWETQRVSILLRTLGF 325
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS R L FR G +LV++D RG+D+ V+ V+NYD P K
Sbjct: 326 GAIPLH---GQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSK 382
Query: 373 TYIHRAGRTARAGQLGRCFTLL 394
TY+HR GRTARAG+ G +L+
Sbjct: 383 TYVHRVGRTARAGKSGVAISLV 404
>gi|365984991|ref|XP_003669328.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
gi|343768096|emb|CCD24085.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Length = 504
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 204/426 (47%), Gaps = 70/426 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ ++I P L D+ + TGSGKT ++A+PI+ +L + + A ++ PTR+LA Q+
Sbjct: 110 IQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNSLWHDQ-QPYYACILAPTRELAQQI 168
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P +++
Sbjct: 169 KETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPH---------------------VII 207
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L YLV+DE DRLL + L +L++ + +
Sbjct: 208 ATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDMEFGPVLDRILKILPTQGR------T 261
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T +KL + L +P+
Sbjct: 262 TYL-------------------------------FSATMTSKIDKLQRASLTNPVKCAVS 290
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK +L+ LL + I+FT + + R+ L N
Sbjct: 291 -NKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEYIGKSTIIFTRTKANAERISGLCNL--- 346
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R+ L F+ G+ +LV++D RG+D+ V+ V+NYD P K
Sbjct: 347 LEFNATALHGDLNQNQRTGALDLFKAGRKTILVATDVAARGLDIPSVDIVINYDIPVDSK 406
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLRP 429
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P ++ +I +LR
Sbjct: 407 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKETVDKEMILTLRD 462
Query: 430 VYKSGD 435
D
Sbjct: 463 SVDKAD 468
>gi|410078383|ref|XP_003956773.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
gi|372463357|emb|CCF57638.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
Length = 739
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 194/409 (47%), Gaps = 75/409 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 58
+G + P+Q A TI L +D+ + TGSGKT ++ +PI++ L + V R
Sbjct: 232 LGFTKPSPIQSA----TIPIALLGKDIVAGAVTGSGKTAAFMIPIIERLLYKPAKVASTR 287
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+++ PTR+LA+Q+ DV I V GL+ GLAVG ++ + L RP
Sbjct: 288 VVILTPTRELAIQISDVAKKIGHFVNGLTFGLAVGGLNLRQQEQILKSRP---------- 337
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
DI++ATPGR +DH+ + F+++ + LV+DE DR+L E +Q L ++
Sbjct: 338 -----------DIVIATPGRFIDHVRNSASFSVDRVEILVLDEADRMLEEGFQDELSEIM 386
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
T LP+ R ++ SAT+ +
Sbjct: 387 ---------------TLLPT-----------------------RRQNLLFSATMNSKIKQ 408
Query: 238 LAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESKLKP--LY-LVALLQSLGEEKCIV 292
L L L P+ + + + +RL E ++ LKP LY L+ L S G+++ +V
Sbjct: 409 LVSLSLKKPVRIMIDPPK-QAADRLVQEFVRIRKRDHLKPALLYNLIRKLDSTGQKRIVV 467
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F S E HRL +L G + + E G Q R ++ F+ + VL+ +D +R
Sbjct: 468 FVSRKEVAHRLRIILGLLG---MGVAELHGSLSQEQRLDSVNKFKSLDVPVLICTDLASR 524
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
G+D+ + V+NYD P + Y+HR GRTARAG+ GR T + + +R
Sbjct: 525 GLDIPKIEIVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQER 573
>gi|401624697|gb|EJS42747.1| drs1p [Saccharomyces arboricola H-6]
Length = 747
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 188/394 (47%), Gaps = 73/394 (18%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 251 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIAATRVIVLLPT 306
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA + G++ GLAVG ++ + L RP
Sbjct: 307 RELAIQVADVGKQIARFLPGITFGLAVGGLNLRQQEQLLKTRP----------------- 349
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 350 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELSEIMGLLPSNR 405
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 406 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 427
Query: 245 HPLFLTTGETRYKLPERLESY-KLICESKLKPLYLVALLQSL---GEEKCIVFTSSVEST 300
P+ + + + + ++ LKP L L++ L G+++ +VF + E+
Sbjct: 428 RPVRIMIDPPKQAAARLTQEFVRIRKRDHLKPSLLFNLIRKLDPMGQKRIVVFVARKETA 487
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
HRL ++ G L + + E G Q R ++ F+ ++ VLV +D +RG+D+ +
Sbjct: 488 HRLRIVM---GLLGMGVGELHGSLTQEQRLDSVNKFKNLEVPVLVCTDLASRGLDIPKIE 544
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
VVNYD P + Y+HR GRTARAG+ GR TL+
Sbjct: 545 VVVNYDMPKSYEIYLHRVGRTARAGREGRSVTLV 578
>gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 433
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 188/392 (47%), Gaps = 64/392 (16%)
Query: 15 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73
Q ++ P FE RD+ + TGSGKT ++ LPI+Q L + V+ AL++ PTR+LA Q+
Sbjct: 66 QASVLPEAFEGRDIIGLAETGSGKTGAFCLPILQGLLRKPVKGTAALILTPTRELAFQIL 125
Query: 74 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 133
V + A+G + VG + L + P +++A
Sbjct: 126 QVVQGLGQAMGATAVCVVGGVDRTSQAIALGRNPH---------------------VVIA 164
Query: 134 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 193
TPGRL+DH+ T+GF L + YLV+DE DR+L ++ L +L DN
Sbjct: 165 TPGRLLDHLKDTKGFNLNKVRYLVLDEADRMLSMDFEEELHQIL-----DN--------- 210
Query: 194 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 253
+P +L + SAT+T KL + L P+ +
Sbjct: 211 -MPEQRQTL-----------------------LFSATMTTQVAKLERASLKDPVKVQVS- 245
Query: 254 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313
T+++ P++L L +K K YL L+ + +VF ++ + RL +L + G
Sbjct: 246 TKFQTPKQLLQSYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALMLRNLGFP 305
Query: 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
+ + G QS R L+ F G +L+ +D +RG+D+ V+ V+N+D P + K
Sbjct: 306 AVCLH---GQMDQSKRLGALQKFSSGDRTILLCTDVASRGLDLPQVDLVINFDLPGHGKE 362
Query: 374 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ GR ++ + +V+ +++L
Sbjct: 363 YIHRVGRTARAGKSGRAIAMVTQYDVEVYQRL 394
>gi|402591826|gb|EJW85755.1| Ddx49 protein [Wuchereria bancrofti]
Length = 461
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 189/395 (47%), Gaps = 75/395 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+ I++ PVQV + D+ + TG+GKTL++ LPI+ L+ + AL
Sbjct: 62 LAINTPTPVQVNCIPHILAGS----DVLGCAKTGTGKTLAFGLPILHELALDPYG-ICAL 116
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA+Q+ D FAA+ ++GL +G+ VG + S+L +RP
Sbjct: 117 ILTPTRELAMQIGDQFAALGTSIGLKIGIIVGGKDRVAQSSDLARRPH------------ 164
Query: 121 LQELQSAVDILVATPGRLMDHINA---TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
I+VATPGRL DH+ + G E L +LV+DE DRLL Y L T+L
Sbjct: 165 ---------IIVATPGRLADHLESDSENTGKLFEKLRFLVLDEADRLLDGQYSVELKTIL 215
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
TFLP +L + SAT+T ++
Sbjct: 216 ---------------TFLPKQRQTL-----------------------LFSATITSALSQ 237
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK----CIVF 293
L Q+ + P F ++ ++LE ++C +K YLV ++++ E+ ++F
Sbjct: 238 LHQVSVKKPYFF-EDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPESLILIF 296
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
+ + L + + G K+ Q R+ +L FR G+I++L+ +D +RG
Sbjct: 297 SHTCRECQALAIMFHGLG---FKVGSLHSQISQQERTSSLTKFRSGRIKILICTDVASRG 353
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
+D+ V+ VVN++ P KTYIHR GR+ARAG+ G
Sbjct: 354 LDIPHVDLVVNHNVPQNPKTYIHRVGRSARAGRFG 388
>gi|294942246|ref|XP_002783449.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239895904|gb|EER15245.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 463
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 186/398 (46%), Gaps = 65/398 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLAL 70
+ +ETI L RDL + TGSGKT ++A+PI+Q L + A + A V+ PTR+L +
Sbjct: 55 IQEETIPYALQGRDLIALAETGSGKTGAFAIPIIQKLLDAAPHRKLTWACVLAPTRELCV 114
Query: 71 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 130
Q+ F + ++ L+ VG + + L K+P I
Sbjct: 115 QIGQQFEGLGASINLTTATIVGGLDMVTQAMSLSKKPH---------------------I 153
Query: 131 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 190
+VA+PGRL+DH+ T+GF L+ + +LV+DE DRLL ++ L ++Q D +
Sbjct: 154 IVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQ----- 208
Query: 191 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 250
TFL SAT+T ++L + L P+
Sbjct: 209 --TFL-------------------------------FSATMTNKVSQLQRASLTRPVKCE 235
Query: 251 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 310
++ + + L + K K YL ALL ++F + + R+ T L H
Sbjct: 236 VAR-KFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMATTLRHL 294
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
G + + G Q+ R L FR G VLV++D RG+D+ V+ V+N+D P
Sbjct: 295 GHNCVCL---HGKMTQTHRLGALNQFRAGTRSVLVATDVAARGLDIPSVDVVINFDVPKN 351
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+ YIHR GRTARAG+ GR TL+ + +++ F+++ K
Sbjct: 352 PEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRIENK 389
>gi|440486596|gb|ELQ66446.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae P131]
Length = 538
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 180/390 (46%), Gaps = 67/390 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 130 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 188
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ F A+ ++ L + VG + + L K+P
Sbjct: 189 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPH------------------ 230
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 231 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 279
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
FLP RR + SAT++ L + L P
Sbjct: 280 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 309
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 310 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 369
Query: 307 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 370 LRTLSFGAIPL-----HGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 424
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+D P TYIHR GRTARAG+ GR +++
Sbjct: 425 FDMPQDSMTYIHRVGRTARAGRSGRAISII 454
>gi|294911908|ref|XP_002778095.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239886216|gb|EER09890.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 463
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 186/398 (46%), Gaps = 65/398 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLAL 70
+ +ETI L RDL + TGSGKT ++A+PI+Q L + A + A V+ PTR+L +
Sbjct: 55 IQEETIPYALQGRDLIALAETGSGKTGAFAIPIIQKLLDAAPHRKSTWACVLAPTRELCV 114
Query: 71 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 130
Q+ F + ++ L+ VG + + L K+P I
Sbjct: 115 QIGQQFEGLGASINLTTATIVGGLDMVTQAMALSKKPH---------------------I 153
Query: 131 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 190
+VA+PGRL+DH+ T+GF L+ + +LV+DE DRLL ++ L ++Q D +
Sbjct: 154 IVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQ----- 208
Query: 191 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 250
TFL SAT+T ++L + L P+
Sbjct: 209 --TFL-------------------------------FSATMTNKVSQLQRASLTRPVKCE 235
Query: 251 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 310
++ + + L + K K YL ALL ++F + + R+ T L H
Sbjct: 236 VAR-KFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMATTLRHL 294
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
G + + G Q+ R L FR G VLV++D RG+D+ V+ V+N+D P
Sbjct: 295 GHNCVCL---HGKMTQTHRLGALNQFRAGTRSVLVATDVAARGLDIPSVDVVINFDVPKN 351
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+ YIHR GRTARAG+ GR TL+ + +++ F+++ K
Sbjct: 352 PEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRIENK 389
>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 496
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 179/384 (46%), Gaps = 63/384 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 149 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 207
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 208 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 246
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 247 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 294
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 295 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 329
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 330 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 385
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 386 LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 445
Query: 373 TYIHRAGRTARAGQLGRCFTLLHK 396
+YIHR GRTARAG+ G+ +L+ +
Sbjct: 446 SYIHRVGRTARAGRSGKSISLVSQ 469
>gi|331219074|ref|XP_003322214.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301204|gb|EFP77795.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 785
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 194/420 (46%), Gaps = 82/420 (19%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---L 57
M I+S P+Q ++ I GL +DL +S TGSGKTL Y +PIV+ L R +
Sbjct: 265 MSITSPTPIQ----RQAIPLGLLGKDLVCSSVTGSGKTLGYMVPIVERLIWRDKKGGGRT 320
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
R +++ PTR+LA+QV V +A L+ L VG + + +EL +RP
Sbjct: 321 RVMILTPTRELAVQVFQVGKLLARFTDLTFSLCVGGMDLRTQEAELRERP---------- 370
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+I++ TPGR++DHI TRGF+LE L LV+DE DR+L E +Q L +
Sbjct: 371 -----------EIVIGTPGRVIDHIRNTRGFSLETLEILVIDEADRILEEGFQDELEEI- 418
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
I C P R M+ SAT+ +
Sbjct: 419 ---------------------------ISNC---------PRSRQT-MLFSATVNESVAD 441
Query: 238 LAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESK--------LKPLYLVALLQ--S 284
LA+L L P+ + T L + K +K + LV L + +
Sbjct: 442 LAKLSLDKPIRIKIDPPKSTAAGLTQEFLKVKDSASNKKAASLTDVTRQAILVTLCKASA 501
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
+ + I+F S HR+ + + F +K +E G Q R L+ F++G+ L
Sbjct: 502 FSKGRTIIFFRSKVGAHRMKIIFSLFS---LKAEELHGNLNQQQRLAALQKFKDGETSFL 558
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 404
+++D +RG+D++GV V+NY+ P Y+HR GRTARAG G TL+ + + K K+
Sbjct: 559 LATDLASRGLDIKGVERVINYEPPTQYDVYLHRIGRTARAGTKGSALTLVGESDRKLIKE 618
>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 449
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 193/412 (46%), Gaps = 62/412 (15%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRALVVLPTRDLALQ 71
V ETI L +D+C + TGSGK++++ +PIVQ L + R + +AL++ PTR+LA Q
Sbjct: 33 VQAETIPKILSGQDICATAITGSGKSMAFLIPIVQKLLTFRGLPGPKALIMSPTRELAQQ 92
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
+K V +A ++ L +G ++DE + P A DI+
Sbjct: 93 LKAVCDMLAAHCAITSTLVIG--GVSDEEQRELLTP-------------------APDII 131
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
+ TPGR +D I + LEHL + V+DE DRLL + +++ L T++ ++ A
Sbjct: 132 IGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKHQTLLFTA 191
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
+ L L T + PY M L+ +TQ +F+ T
Sbjct: 192 T--LNDQVAKLATKIQKKSSEKISINPY-----MELNPNITQ-------------MFIKT 231
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
+ +LP YLVAL +++ ++K +VF + H + L + G
Sbjct: 232 KKEERRLP-----------------YLVALCRNMCKDKTLVFFPTKALAHHVFLLFKNLG 274
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
I E Q+ R++ ++ FRE K+Q L++SD RG+D+ + V+N+ P +
Sbjct: 275 ---IASAELHADLSQTARNEAIEQFRESKVQYLLASDLAARGIDIPDIEYVINFTIPNEL 331
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423
+ YIHR GRT RAG+ G ++ E KR K +QK +IP +L
Sbjct: 332 ERYIHRTGRTGRAGKKGTAISMYVTPEEKRVMKKMQKNSPGEVQFMTIPDNL 383
>gi|296394809|ref|YP_003659693.1| DEAD/DEAH box helicase [Segniliparus rotundus DSM 44985]
gi|296181956|gb|ADG98862.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
44985]
Length = 452
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 194/410 (47%), Gaps = 72/410 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRA 59
G+++ FP+Q A + P L RD+ PTGSGKTL++ LP++ L+N A R R
Sbjct: 23 GVTAPFPIQAAA----LPPALEGRDVLGRGPTGSGKTLTFGLPMLARLANGASKPRKPRG 78
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV++PTR+LA QV +A +VGL VG S+ +I EL +
Sbjct: 79 LVLVPTRELAAQVASALTPLAASVGLRTASVVGGLSMQRQIDELAR-------------- 124
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
VD+LVATPGRL DH+ A L+ + +DE D++ A +LP V+++
Sbjct: 125 -------GVDVLVATPGRLADHL-AQGTVVLDEVSVTALDEADQM---ADMGFLPQVVKI 173
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
D+ + +++ SATL +KL
Sbjct: 174 L-----------------------------------DRTPKKGQRLLFSATLDGQVDKLV 198
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+ L +P +T + +E + L + + K L + + E + I+F +
Sbjct: 199 RRYLDNPATCSTAPAAASV-STMEHHMLFVDQEQKKLVVTEIAAR--EGRTILFVHTKHG 255
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
RL L G + G + Q+ R++TL+AF+ G + VLV+++ RG+ ++GV
Sbjct: 256 ADRLTKRLRAVG---VSAAAIHGGKAQNNRTRTLEAFKSGDVAVLVATNVAARGVHIDGV 312
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+ VV+ D PA K Y+HRAGRTARAG+ G TL+ E + + + + A
Sbjct: 313 DLVVHVDPPADPKDYLHRAGRTARAGESGVVITLVTPAERRDAEAMARAA 362
>gi|440475921|gb|ELQ44569.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae Y34]
Length = 906
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 190/407 (46%), Gaps = 67/407 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 130 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 188
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ F A+ ++ L + VG + + L K+P
Sbjct: 189 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPH------------------ 230
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 231 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 279
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
FLP RR + SAT++ L + L P
Sbjct: 280 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 309
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 310 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 369
Query: 307 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 370 LRTLSFGAIPLH-----GQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 424
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
+D P TYIHR GRTARAG+ GR +++ + +++ + ++ + A N
Sbjct: 425 FDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALN 471
>gi|388580865|gb|EIM21177.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 581
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 189/399 (47%), Gaps = 70/399 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCL 57
MG S + VQ +TI P + RD+ + TGSGKTL++ +P ++ LS +
Sbjct: 74 MGFSQMTEVQA----KTIPPLMAGRDVLGAAHTGSGKTLAFLIPAIEMLSRLHFKPRNGT 129
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
A+V+ PTR+LALQ+ V I + G+ +G ++ K EA
Sbjct: 130 GAIVISPTRELALQIFGVAKDIMKNHNQTFGIIMGGAN-----------RKAEA------ 172
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+LQ V++++ATPGRL+DH+ T+GF ++ L++DE DR+L ++ + ++
Sbjct: 173 ----DKLQKGVNLIIATPGRLLDHLQNTKGFVFSNMKSLIIDEADRILEIGFEEEMRQIV 228
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
++ ++N M+ SAT T
Sbjct: 229 KILPTENRQ-------------------------------------TMLFSATQTTKVTD 251
Query: 238 LAQLDLHH-PLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
LA++ L PL++ E R E+LE ++CES ++ L L L+ ++K IVF S
Sbjct: 252 LARVSLRQGPLYINVHEERSAATNEQLEQGYVVCESDMRFLLLFTFLKKNLKKKVIVFFS 311
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
S S LLN+ + I + + G Q+Q R+ T F +L+ +D RG+D
Sbjct: 312 SCNSVKYHGELLNY---IDIPVLDLHGKQKQQKRTNTFFEFCNAPNGILLCTDVAARGLD 368
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ V+ ++ +D P + YIHR GRTARAG+ G+ L
Sbjct: 369 IPAVDWIIQFDPPDDPRDYIHRVGRTARAGKAGKSLLFL 407
>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 470
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 178/389 (45%), Gaps = 66/389 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + +++ L RD+ + TGSGKT ++A+PI+Q L A A V+ PTR
Sbjct: 87 FSTPTPIQAQSLPHSLQGRDIIGIAQTGSGKTAAFAIPILQALWE-AQTPYFACVLAPTR 145
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+++ F A+ +GL VG + ++ EL+++P
Sbjct: 146 ELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRKPH------------------ 187
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
++VATPGRLMDH+ T+GF+L+ L YLV+DE DRLL + L +L +
Sbjct: 188 ---VIVATPGRLMDHLENTKGFSLKALKYLVMDEADRLLDMEFGPVLDRILNII------ 238
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL-SATLTQDPNKLAQLDLHH 245
PR K L SATLT KL + L
Sbjct: 239 ---------------------------------PRERKTYLFSATLTSKVEKLQRASLID 265
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
P+ + + +Y + L ++ K YL+ LL + IVF + ++
Sbjct: 266 PVKIAVND-KYSTVDTLIQTLMVVPDGYKNTYLIYLLNEYVGKSVIVFARTCAHAQKVAL 324
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
L G I + G Q+ R L F+ G Q+LV++D RG+D+ V+ VVNY
Sbjct: 325 LARILGFSAIPL---HGQLTQAQRLGALNKFKSGDKQILVATDVAARGLDIPSVDLVVNY 381
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D P K YIHR GRTARAG+ G+ +L+
Sbjct: 382 DIPTDSKAYIHRVGRTARAGRSGKSVSLV 410
>gi|60416850|emb|CAI59782.1| hypothetical protein [Homo sapiens]
Length = 268
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 131/230 (56%), Gaps = 17/230 (7%)
Query: 218 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLE 263
P L K++ SATLTQ+P KL QL LH P +TG +Y P L
Sbjct: 22 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLT 81
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
+ + C KPL ++ L+ +G + + FT+S E++HRL L+ FG + + E+S
Sbjct: 82 HHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSR 139
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH-RAGRTA 382
R LK F +GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+H R GRTA
Sbjct: 140 YGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRRVGRTA 199
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
RAG+ G+ FTLL K + +R ++L +A H + S L++ L P Y+
Sbjct: 200 RAGKTGQAFTLLLKVQERRLLRMLTEAGAPELQRHELSSKLLQPLVPRYE 249
>gi|392578929|gb|EIW72056.1| hypothetical protein TREMEDRAFT_41472 [Tremella mesenterica DSM
1558]
Length = 491
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 192/398 (48%), Gaps = 68/398 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P+QV E I L RD+ + TGSGKT +++LPI+Q L + AL++ PTR+
Sbjct: 71 PIQV----EAIPSALQGRDVIGLAQTGSGKTAAFSLPILQKLWENP-QPFFALILAPTRE 125
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ ++ +G+ + VG + + L KRP
Sbjct: 126 LAYQISQQVTSLGSPLGVRTAVIVGGMDMMSQSIALSKRPH------------------- 166
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
++VATPGRLMDH+ T+GF+L+++ +LV+DE DRLL + + +L++ +
Sbjct: 167 --VIVATPGRLMDHLENTKGFSLKNVKFLVMDEADRLLDMDFGPIIDKILKVIPKER--- 221
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
+T+L SAT+T KL + L+ P+
Sbjct: 222 ----NTYL-------------------------------FSATMTTKVAKLQRASLNKPV 246
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
+ T+Y L + L+ K K +L+ ++ L I+FT +V RL +L
Sbjct: 247 RVEVA-TKYSTVSTLLQHYLLLPLKAKDTHLLYIVTELSSCSMIIFTRTVVDAQRLSIML 305
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
G I + G QS+R +L F+ G +LV++D +RG+D+ V+ VVNYD
Sbjct: 306 RRLGFPAIPLH---GQMSQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVVNYDM 362
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P K Y+HR GRTARAG+ G+ T++ + +V+ +++
Sbjct: 363 PINSKDYVHRVGRTARAGRSGKSITMVTQYDVEILQRI 400
>gi|156083170|ref|XP_001609069.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796319|gb|EDO05501.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 433
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 190/405 (46%), Gaps = 65/405 (16%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG + P+Q+A I L RD+ + TGSGKT ++ +P++ L R + +
Sbjct: 61 MGWQAPTPIQMAA----IPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQR-IYCV 115
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ P+R+L Q+ + F A++ ++ L V + +G + + S L KRP
Sbjct: 116 VLAPSRELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPH------------ 163
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++VA+PGRL DH+ T+GF+L + LV+DE DRLL + + L ++
Sbjct: 164 ---------VIVASPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAM 214
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
++ + TFL SAT+T+ +KL +
Sbjct: 215 PTERQ-------TFL-------------------------------FSATMTKKLSKLQK 236
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
+ L P+ + + +Y E L+ L+ K K YL ALL IVF + +
Sbjct: 237 MALKDPISVQVDD-KYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAIVFCKTCDGA 295
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
R L I G Q+ RS+ L+ F+ G + +LV+++ RG+D+ V
Sbjct: 296 QRCAAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRGLDLPMVE 355
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
V+N+D P K YIHR GRTARAG+ G T++ + +V+ F+++
Sbjct: 356 LVINFDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRI 400
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 199/416 (47%), Gaps = 66/416 (15%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAAIAPA 82
+D+ + TGSGKT ++ +PI++ L R V R + +PTR+LA+Q +V +A
Sbjct: 313 KDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASF 372
Query: 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 142
++ L G S D+ + L RP D+++ATPGR +DH+
Sbjct: 373 TDITFALMAGGFSTRDQEAVLKTRP---------------------DVVIATPGRFIDHM 411
Query: 143 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 202
+ T F +EHL LV+DE DR+L E +++ L +L T +P + +
Sbjct: 412 HNTAAFQVEHLEILVLDEADRMLEEGFESQLNEIL---------------TTIPKSRQT- 455
Query: 203 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
M+ SAT+T +KL ++ + P+ L ++ +
Sbjct: 456 ----------------------MLFSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLT 493
Query: 263 ESYKLICESKLKP--LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+ + + + K YL+ + + + EK IVF + HR+ + G +K E
Sbjct: 494 QEFVRLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCG---LKASEL 550
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q R ++++AFR GK L+++D +RG+D++ V+ V+NY+ P + Y+HR GR
Sbjct: 551 HGNMSQEQRIQSVEAFRSGKSAYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGR 610
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 436
TARAG+ GR TL + + K K+ ++ + + + S + E+ R + K D+
Sbjct: 611 TARAGRSGRACTLAAEPDRKVVKQAVKASRDQGAKVVSRQVPIEETDRWMKKIKDL 666
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 199/416 (47%), Gaps = 66/416 (15%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAAIAPA 82
+D+ + TGSGKT ++ +PI++ L R V R + +PTR+LA+Q +V +A
Sbjct: 313 KDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASF 372
Query: 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 142
++ L G S D+ + L RP D+++ATPGR +DH+
Sbjct: 373 TDITFALMAGGFSTRDQEAVLKTRP---------------------DVVIATPGRFIDHM 411
Query: 143 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 202
+ T F +EHL LV+DE DR+L E +++ L +L T +P + +
Sbjct: 412 HNTAAFQVEHLEILVLDEADRMLEEGFESQLNEIL---------------TTIPKSRQT- 455
Query: 203 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
M+ SAT+T +KL ++ + P+ L ++ +
Sbjct: 456 ----------------------MLFSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLT 493
Query: 263 ESYKLICESKLKP--LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+ + + + K YL+ + + + EK IVF + HR+ + G +K E
Sbjct: 494 QEFVRLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCG---LKASEL 550
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q R ++++AFR GK L+++D +RG+D++ V+ V+NY+ P + Y+HR GR
Sbjct: 551 HGNMSQEQRIQSVEAFRSGKSAYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGR 610
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 436
TARAG+ GR TL + + K K+ ++ + + + S + E+ R + K D+
Sbjct: 611 TARAGRSGRACTLAAEPDRKVVKQAVKASRDQGAKVVSRQVPIEETDRWMKKIKDL 666
>gi|409045997|gb|EKM55477.1| hypothetical protein PHACADRAFT_184272 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 184/381 (48%), Gaps = 46/381 (12%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD+ + TGSGKT ++ALPI+Q L + R L A V+ PTR+LA Q+ + F A+ A+G
Sbjct: 59 RDIIGVASTGSGKTAAFALPILQKLWDDP-RGLFACVIAPTRELAYQITEHFEALGSAMG 117
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
+ VG + L K+P ++VATPGRL H+
Sbjct: 118 VRCATVVGGIDEMSQAVALAKKPH---------------------VVVATPGRLQYHLEN 156
Query: 145 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 204
T+GF+L L +LV+DE DRLL + L +L++ + +T+L F + T
Sbjct: 157 TKGFSLRSLKFLVLDEADRLLDMDFGPILDKILKVIPQER-------TTYL---FSATMT 206
Query: 205 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 264
+ ++R P V++ +S K A L L L RY L
Sbjct: 207 TKVAKLQRASLSNP----VRVEVS-------EKYAPLLLIRLLMRLRVSRRYSTVSTLLQ 255
Query: 265 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 324
Y L K + L+ L SL I+FT +V RL ++ G + + G
Sbjct: 256 YYLFIPLVQKDVNLMYLANSLASNSIIIFTRTVHDCQRLAIMMRTLGFPAVPLH---GQL 312
Query: 325 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
QS R L F+ G +VLV++D +RG+D+ V+ V+NYD P + K YIHR GRTARA
Sbjct: 313 SQSARLGALGKFKSGGRKVLVATDVASRGLDIPHVDAVINYDIPTHSKDYIHRVGRTARA 372
Query: 385 GQLGRCFTLLHKDEVKRFKKL 405
G+ G+ T + + +V+ +++
Sbjct: 373 GRSGKSITFVTQYDVELVQRI 393
>gi|403217172|emb|CCK71667.1| hypothetical protein KNAG_0H02520 [Kazachstania naganishii CBS
8797]
Length = 754
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 190/414 (45%), Gaps = 85/414 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
+G + P+Q A TI L +D+ + TGSGKT ++ +PI++ L V R
Sbjct: 257 LGYTKPSPIQSA----TIPVALQGKDVIAGAVTGSGKTAAFMIPIIERLLFKPSKVAMTR 312
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+V+ PTR+LA+Q+ DV I V GL+ GLAVG ++ + L RP
Sbjct: 313 VIVLTPTRELAIQISDVAKKIGQFVSGLTFGLAVGGLNLRQQEQALKARP---------- 362
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++
Sbjct: 363 -----------DIVIATPGRFIDHIRNSASFNVDSVEILVLDEADRMLEEGFQDELKEIM 411
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
T LPS +L + SAT+
Sbjct: 412 ---------------TMLPSKRQNL-----------------------LFSATMNSKIKS 433
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GE 287
L L L P+ + P + + KL E LKP L L++ L +
Sbjct: 434 LVSLSLRRPVRIMID------PPKQAASKLTQEFVRIRKRDNLKPALLFNLIRKLDSNAQ 487
Query: 288 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 347
++ +VF + E+ HRL +L G + + E G Q R +++ F+ + VL+ +
Sbjct: 488 KRIVVFVARKETAHRLRIILGLLG---MAVAELHGSLTQEQRLESVTRFKSLDVPVLICT 544
Query: 348 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR TL+ + +R
Sbjct: 545 DLASRGLDIPKIEVVINYDMPKSHEIYLHRVGRTARAGREGRSVTLVGESSQER 598
>gi|168046775|ref|XP_001775848.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672855|gb|EDQ59387.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 180/381 (47%), Gaps = 69/381 (18%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
+D+ + TGSGKT ++ALPI+Q L+ ALV+ PTR+LA Q+ D F A+ V
Sbjct: 82 KDVFGLAQTGSGKTAAFALPILQKLAENPYGVF-ALVLTPTRELAFQISDQFKALGSEVN 140
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
L + VG + + L++RP I++ATPGRL DH
Sbjct: 141 LRSTVVVGGMDMTTQAKALMQRPH---------------------IVIATPGRLRDHFMN 179
Query: 145 TRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 202
G YLV+DE DRL+ +++ L +V + S+ +
Sbjct: 180 DPGIPDVFAKAKYLVLDEADRLMDVGFESELRSVFETMPSNRQT---------------- 223
Query: 203 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
++ SAT+T + L L L F E +K E L
Sbjct: 224 ----------------------LLFSATMTSNLKALHDLSLDKAFFYQQYEG-FKTVEAL 260
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEK---CIVFTSSVESTHRLCTLLNHFGELRIKIKE 319
+ ++ + +K +YL+ ++ +L E K I+F SS + H L +++ EL +
Sbjct: 261 QQQYILTPANVKDVYLMHIMSTLEERKIRSVIIFASSCRTCHLLSLMMS---ELEVDTTA 317
Query: 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 379
++ Q R +L F+ G++ +L+++D +RG+D+ V+ V+NYD P + + Y+HR G
Sbjct: 318 LHSMKTQQQRLASLSRFKSGQVSILIATDVASRGLDIPTVDLVINYDIPRFTRDYVHRVG 377
Query: 380 RTARAGQLGRCFTLLHKDEVK 400
RTARAG+ G +L+ + +V+
Sbjct: 378 RTARAGRGGSAVSLITQYDVQ 398
>gi|385305508|gb|EIF49474.1| atp-dependent rna helicase dbp6 (dead-box protein 6) [Dekkera
bruxellensis AWRI1499]
Length = 528
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 203/429 (47%), Gaps = 67/429 (15%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER-------DLCINSPTGSGKTLSYALPIVQTLSNRA 53
GI F VQV V Q + R D +N+ TGSGKTL+Y +P+V+ L NR
Sbjct: 88 FGIEEAFSVQVNVIQSIMKAVTKNRLDPRPYGDYLVNAATGSGKTLAYLIPVVEALKNRX 147
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV-GLAVGQSSIADEISELIKRPKLEAG 112
V +R ++ PT+ L QV + L++ L G+S + + P
Sbjct: 148 VPRVRCXILAPTKPLVNQVYLTLLKLTKGFDLNIIALRSGESLRIEHDRFVNNHP----- 202
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
DI+VATPGRL+DHI + L L +LVVDE DRLL +++Q W
Sbjct: 203 ----------------DIIVATPGRLVDHI-SKFDLDLSQLRFLVVDEADRLLNQSFQNW 245
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
++ ++ E+ D+++F + K RC VK++LSATLT
Sbjct: 246 CDVLVGKIEAEQEDD-QDSNSF----YNKFKI--RC--------------VKVILSATLT 284
Query: 233 QDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKLICESKL---KPLYLVALLQ 283
+ KL+ L L P + + Y+LP LE Y + L KPL + L
Sbjct: 285 TNSEKLSHLKLFKPNLVVINNSEELVHELYQLPPHLEEYYINIPEALSFYKPLIFLRFLL 344
Query: 284 SLGE--EKCIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ + ++FT S E+ RL LL+ ++ + + + S + K LK F +
Sbjct: 345 DQPDLIDHGLIFTKSNETAVRLSRLLQLLSSDSNQKLSVLCXNSATKSSQKRKILKEF-D 403
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD 397
+L+++D M+RG++ + + VVNYD P K YIHR GRTARA + GR F+ +
Sbjct: 404 INGGILIATDLMSRGLNFDSIKFVVNYDLPLSTKEYIHRVGRTARANKQGRAFSFCFGEG 463
Query: 398 EVKRFKKLL 406
+ + FKKL+
Sbjct: 464 DFRWFKKLV 472
>gi|401840824|gb|EJT43489.1| DRS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 758
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 188/401 (46%), Gaps = 73/401 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLR 58
+G + P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R
Sbjct: 255 LGYVTPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTR 310
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+V+LPTR+LALQV DV IA V ++ GLAVG ++ + L RP
Sbjct: 311 VIVLLPTRELALQVADVGKQIARFVPSITFGLAVGGLNLRQQEQMLKSRP---------- 360
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++
Sbjct: 361 -----------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIM 409
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
L S +N ++ SAT+
Sbjct: 410 GLLPSSRQN--------------------------------------LLFSATMNSKIKS 431
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPLYLVALLQSL---GEEKCIVF 293
L L L P+ + + + + + ++ LKP + L++ L +++ +VF
Sbjct: 432 LVSLSLKRPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALIFNLIRKLDPMAQKRIVVF 491
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
+ ES HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG
Sbjct: 492 VARKESAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVSKFKNLEVPVLICTDLASRG 548
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 549 LDIPKIEVVINYDMPKSHEVYLHRVGRTARAGREGRSVTFV 589
>gi|365759503|gb|EHN01286.1| Drs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 737
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 185/394 (46%), Gaps = 73/394 (18%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 241 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 296
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LALQV DV IA V ++ GLAVG ++ + L RP
Sbjct: 297 RELALQVADVGKQIARFVPSITFGLAVGGLNLRQQEQMLKSRP----------------- 339
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S
Sbjct: 340 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSSR 395
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 396 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 417
Query: 245 HPLFLTTGETRYKLPERLESY-KLICESKLKPLYLVALLQSL---GEEKCIVFTSSVEST 300
P+ + + + + + ++ LKP + L++ L +++ +VF + ES
Sbjct: 418 RPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALIFNLIRKLDPMAQKRIVVFVARKESA 477
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+D+ +
Sbjct: 478 HRLRIIM---GLLGMSVGELHGSLTQEQRLDSVSKFKNLEVPVLICTDLASRGLDIPKIE 534
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 535 VVINYDMPKSHEVYLHRVGRTARAGREGRSVTFV 568
>gi|307168298|gb|EFN61504.1| Probable ATP-dependent RNA helicase Dbp73D [Camponotus floridanus]
Length = 581
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 164/368 (44%), Gaps = 65/368 (17%)
Query: 2 GISSLFPVQVAV--WQETIGP----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
GI LFPVQ V W G + RD C+++PTGSGKTL+Y LPI+Q L R V
Sbjct: 212 GIVKLFPVQSNVIKWLHKCNMDRKLGRWPRDTCVSAPTGSGKTLAYVLPIIQELQTRLVP 271
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+R L+VLP ++LA QV V L VGL G S E + +IK K E G Y
Sbjct: 272 KIRCLIVLPVQELAAQVHRVMLTYTSHTNLKVGLLSGAFSFEQEQNSIIK--KTERGKYY 329
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S VDI++ATPGRL+DHI T GF+ + L +LV+DE DR W+
Sbjct: 330 ----------STVDIIIATPGRLVDHILKTPGFSFDSLKFLVIDEADRAAE-----WM-- 372
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+LP S I G K P K++ SATL+QDP
Sbjct: 373 -----------------QYLPEPH-SRAPILTLGNIHSSKITPAQ---KLLFSATLSQDP 411
Query: 236 NKLAQLDLHHPLFLTTGET-----------------RYKLPERLESYKLICESKLKPLYL 278
KL+ L L P+ TT T RY P L + C + KP+ L
Sbjct: 412 EKLSWLGLFQPILFTTVVTDKDTDVNLDKIAGDFIGRYTSPGELTELAMECNVEYKPVAL 471
Query: 279 VALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELR-IKIKEYSGLQRQSVRSKTLKAF 336
LL K +VFT+S +THRL L+ R + + E S R L F
Sbjct: 472 YQLLTRHDTISKTLVFTNSGHTTHRLALLMQSLLSKRNVAVGELSAQLAPKQRESVLGRF 531
Query: 337 REGKIQVL 344
+I V+
Sbjct: 532 ASAEIHVM 539
>gi|414876987|tpg|DAA54118.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 277
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 102/155 (65%), Gaps = 11/155 (7%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI +L PVQ A W E IG G FER++CIN PTG+GKTL+Y LPI+Q AL
Sbjct: 117 MGIEALCPVQEAAWLERIGLGTFERNICINFPTGAGKTLAYVLPIMQ-----------AL 165
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVL TRDLA QVK+ F IAP V VGLAVG+SSIA+E+ L+++ K E D E V
Sbjct: 166 VVLHTRDLAWQVKEAFDVIAPVVDFLVGLAVGKSSIAEEVFSLVRQSKQELYSTIDEEYV 225
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 155
E Q+ + ILVA GRL DHIN T F+L+HL Y
Sbjct: 226 QMEPQTKIKILVAISGRLRDHINMTNDFSLKHLHY 260
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 198/420 (47%), Gaps = 70/420 (16%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 58
+G S P+Q + I + +D+ + TGSGKT ++ +PI++ L R V R
Sbjct: 298 VGFSEPTPIQ----NKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTR 353
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
+ +PTR+LA+Q +V +A ++ L G S D+ + L RP
Sbjct: 354 VAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTKDQEAVLKTRP----------- 402
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
D+++ATPGR +DH++ T F +EHL LV+DE DR+L E +++ L +L
Sbjct: 403 ----------DVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEIL- 451
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
T +P S +T M+ SAT+T ++L
Sbjct: 452 --------------TTIPK---SRQT--------------------MLFSATMTSTVDRL 474
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESK--LKPLYLVALLQSLGEEKCIVFTSS 296
++ + P+ L ++ + + + + + K + YL+ + + E+ I+F
Sbjct: 475 IRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDRRLAYLMYICEKFYNERVIIFFRQ 534
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ HR+ + G +K E G Q R + ++AFR GK L+++D +RG+D+
Sbjct: 535 KKEAHRVRVVFALCG---LKASELHGNMSQEQRIQAVEAFRSGKSAYLLATDVASRGLDI 591
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+ V+ V+NY+ P Y+HR GRTARAG+ GR TL + + K K+ ++ A + +
Sbjct: 592 KNVSTVINYEAPQTHDIYMHRVGRTARAGREGRACTLAAEPDRKVVKQAVKAARDQGAKV 651
>gi|261414880|ref|YP_003248563.1| DEAD/DEAH box helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371336|gb|ACX74081.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 463
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 195/396 (49%), Gaps = 74/396 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G + L PVQ +++I L RD+ + S TGSGKT +YALP++Q + R +AL+
Sbjct: 49 GWTELMPVQ----RKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIV-RDHPYPQALI 103
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
++PTR+L +QV++ F ++ G IK + G+ Y+P+ +
Sbjct: 104 LVPTRELCIQVQEEFEKLSKGTG-------------------IKSVAIFGGVSYEPQ--I 142
Query: 122 QELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+ L+S V ++VATPGRLMDHI RG L + LV+DE D +L + P + ++
Sbjct: 143 KALRSGVHVIVATPGRLMDHIQ--RGNVDLLSIRDLVLDEADEMLS---MGFYPDMQKIR 197
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
+ +LP A + SAT+ Q LA+
Sbjct: 198 K------------YLPKAISC-----------------------TMYSATIPQTVKSLAR 222
Query: 241 LDLHHP--LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+ P FL+ + + LE C+ K + +L+ E C++F +
Sbjct: 223 -EFQRPGADFLSLSYDKV-IANNLEHRYYTCDVMEKDSMTIKVLEYYNPESCMIFCNYKR 280
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
L +L+ +G ++ SG QS+R KTL AFR+ K+++L+ +D RG+DV+
Sbjct: 281 DVSYLEQVLSGYG---FEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAARGIDVDH 337
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V +V+ YD PA + Y+HR+GRTARAG+ G C +L+
Sbjct: 338 VTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLI 373
>gi|71031306|ref|XP_765295.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68352251|gb|EAN33012.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 470
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 195/410 (47%), Gaps = 79/410 (19%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L +D+ + TGSGKT ++ +PI+Q L + R L +L++ PTR+
Sbjct: 64 PTKIQI--EAIPIALSGKDIIGLAETGSGKTAAFTIPILQKLLEKPQR-LFSLILAPTRE 120
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
L+LQ+K+ ++ +GL V L +G + + +L K+P
Sbjct: 121 LSLQIKEQLISLGSEIGLDVCLILGGLDMVSQALQLSKKP-------------------- 160
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I+V +PGR+ DH+ T+GF+LE + YLV+DE D+LL +D ++
Sbjct: 161 -HIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLS---------------TDFDDS 204
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
+ T LP KDK V + SAT+T KL ++ L P+
Sbjct: 205 LNKIITSLP------------------KDK-----VTYLYSATMTSKITKLQKVTLMKPI 241
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
+ T+Y E L L+ K K YL +L +VF ++ ++ ++ L
Sbjct: 242 QINVN-TKYHTSEHLIQKYLLIPLKFKYTYLACILWKYSTSTIMVFCNTCLTSQKVTLFL 300
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ-------------VLVSSDAMTRGM 354
+ L K G Q R +L +F+ GK+Q +LV +D +RG+
Sbjct: 301 QN---LSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPIPQPHIISGLFNILVVTDVGSRGL 357
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 404
D+ V+ V+N+D P K YIHR GRTARAG+ G TL+ + +++ F++
Sbjct: 358 DIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQYDIESFQR 407
>gi|385789846|ref|YP_005820969.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326490|gb|ADL25691.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 483
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 195/396 (49%), Gaps = 74/396 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G + L PVQ +++I L RD+ + S TGSGKT +YALP++Q + R +AL+
Sbjct: 69 GWTELMPVQ----RKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIV-RDHPYPQALI 123
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
++PTR+L +QV++ F ++ G IK + G+ Y+P+ +
Sbjct: 124 LVPTRELCIQVQEEFEKLSKGTG-------------------IKSVAIFGGVSYEPQ--I 162
Query: 122 QELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+ L+S V ++VATPGRLMDHI RG L + LV+DE D +L + P + ++
Sbjct: 163 KALRSGVHVIVATPGRLMDHIQ--RGNVDLLSIRDLVLDEADEMLS---MGFYPDMQKIR 217
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
+ +LP A + SAT+ Q LA+
Sbjct: 218 K------------YLPKAISC-----------------------TMYSATIPQTVKSLAR 242
Query: 241 LDLHHP--LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+ P FL+ + + LE C+ K + +L+ E C++F +
Sbjct: 243 -EFQRPGADFLSLSYDKV-IANNLEHRYYTCDVMEKDSMTIKVLEYYNPESCMIFCNYKR 300
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
L +L+ +G ++ SG QS+R KTL AFR+ K+++L+ +D RG+DV+
Sbjct: 301 DVSYLEQVLSGYG---FEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAARGIDVDH 357
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V +V+ YD PA + Y+HR+GRTARAG+ G C +L+
Sbjct: 358 VTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLI 393
>gi|84999282|ref|XP_954362.1| ATP-dependent RNA helicase [Theileria annulata]
gi|65305360|emb|CAI73685.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 503
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 200/420 (47%), Gaps = 59/420 (14%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D I +PTG GKTL YALP++ + N L +L+++P+R+L Q+ +VF+ +
Sbjct: 81 DFIITAPTGQGKTLCYALPLIYNILNLKENRLLSLIIVPSRELVKQIYEVFSWFTDS--- 137
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD----ILVATPGRLMDH 141
+++ D +K P L+A + Y ++ V+ I + TPG L+++
Sbjct: 138 -------KTTGHD-----LKGPSLKARVFYGDRSFVKCHDMLVNDPPHIAICTPGVLVEY 185
Query: 142 -INATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
++ R F T EHL ++V+DE D +L + + W+ V+ L S
Sbjct: 186 SVDFQREFYDTFEHLKWIVIDEVDTMLNQTFYEWVDVVVDLV----------------SR 229
Query: 199 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 258
S + + GV + K+++SAT+ + + L+L+ P+ L E+ YKL
Sbjct: 230 LKSKEPNQSLGVPQ-----------KILVSATVPLKSHDIELLELNRPILLRLKESIYKL 278
Query: 259 PERLESYKLICESK---LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL-----LNHF 310
PE L+ ++C ++ L+ L L+A L +VF S V++ H++ L L H
Sbjct: 279 PENLKQSYVVCSNRPVSLEFLKLMAFLYKDVTGNVLVFFSKVQTCHKITRLMQIYNLKHG 338
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
G K E +G Q R+ +K +++ L+ SD +RGMD+ N VV+YD P
Sbjct: 339 GGF--KAIELTGRMPQKQRNNAIKTYKDEDRVCLLCSDVASRGMDLSNTNVVVSYDFPNK 396
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 430
+ +YIHRAGRTAR G + K+F + K D + I ++ + + V
Sbjct: 397 LSSYIHRAGRTARGNNKGTFCVFVSNQTEKKFHNFMNKLKIDEEKLKKIELDIVLNQKKV 456
>gi|156083174|ref|XP_001609071.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796321|gb|EDO05503.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 454
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/398 (28%), Positives = 187/398 (46%), Gaps = 65/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P+Q+A I L RD+ + TGSGKT ++ +P++ L R + +V+ P+R+
Sbjct: 57 PIQMAA----IPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQR-IYCVVLAPSRE 111
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
L Q+ + F A++ ++ L V + +G + + S L KRP
Sbjct: 112 LCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPH------------------- 152
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
++VA+PGRL DH+ T+GF+L + LV+DE DRLL + + L ++ ++ +
Sbjct: 153 --VIVASPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQ-- 208
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ +KL ++ L P+
Sbjct: 209 -----TFL-------------------------------FSATMTKKLSKLQKMALKDPI 232
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
+ + +Y E L+ L+ K K YL ALL IVF + + R L
Sbjct: 233 SVQVDD-KYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAIVFCKTCDGAQRCAAYL 291
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
I G Q+ RS+ L+ F+ G + +LV+++ RG+D+ V V+N+D
Sbjct: 292 KGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRGLDLPMVELVINFDI 351
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P K YIHR GRTARAG+ G T++ + +V+ F+++
Sbjct: 352 PECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRI 389
>gi|47682722|gb|AAH69876.1| Ddx51 protein, partial [Mus musculus]
Length = 260
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 129/228 (56%), Gaps = 17/228 (7%)
Query: 222 LVKMVLSATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYK 266
L K++ SATLTQDP KL +L L+ P +T +Y P L +
Sbjct: 18 LQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHY 77
Query: 267 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326
+ C KPL ++ L+ + + + FT+S E++HRL L FG + + E+S
Sbjct: 78 VPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGP 135
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
R K LK F +GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+
Sbjct: 136 GQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGK 195
Query: 387 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
G+ FTLL K + ++F +++ +A H IP L++ L Y++
Sbjct: 196 TGQAFTLLLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETA 243
>gi|451996880|gb|EMD89346.1| hypothetical protein COCHEDRAFT_1141477 [Cochliobolus
heterostrophus C5]
Length = 518
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 176/382 (46%), Gaps = 62/382 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I L RD+ + TGSGKT ++ LPI+Q L + + L L++ PTR+LA Q+
Sbjct: 115 IQAQAIPLALQGRDVIGLAETGSGKTAAFVLPILQALLEKQ-QSLFGLILAPTRELAYQI 173
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
A+ + + VG + + L K+P I+V
Sbjct: 174 AQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPH---------------------IIV 212
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF+L+HL Y+V+DE DRLL + L +L++ + + +
Sbjct: 213 ATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHTY---- 268
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+ SAT++ L + L +P+ ++
Sbjct: 269 ---------------------------------LFSATMSSKVESLQRAALQNPVRVSIS 295
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+ +++ L + K K LYL+ LL I+F+ +V T R+ LL G
Sbjct: 296 SSSHQVVSTLLQRYIFLPHKYKDLYLIHLLNDNIGHPTIIFSRTVNETQRIAILLRTLGF 355
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS R L F+ +LV++D RG+D+ V+ VVN+D P+ +
Sbjct: 356 GAIPLH---GQLSQSARLGALNKFKTQSRDILVATDVAARGLDIPAVDLVVNFDLPSDSQ 412
Query: 373 TYIHRAGRTARAGQLGRCFTLL 394
TY+HR GRTARAG+ G+ + +
Sbjct: 413 TYVHRVGRTARAGKSGKAVSFV 434
>gi|119494337|ref|XP_001264064.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
gi|119412226|gb|EAW22167.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
Length = 863
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 162/342 (47%), Gaps = 81/342 (23%)
Query: 2 GISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G F VQ V + GP DLCI++ TGSGKTLSY LP+V L +R L
Sbjct: 270 GYKEAFAVQSTVIPLLLQGPRRHPGDLCISAATGSGKTLSYVLPLVTALKPTPAPRMRGL 329
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-- 118
+V+PTR+L Q ++ A GL +G AVG +I DE +R + CY PE
Sbjct: 330 IVVPTRELVKQAREACELCATGSGLRIGSAVGNVAIKDE-----QRTLMRVDQCYGPELS 384
Query: 119 ---------------------------------DVLQELQSAVDILVATPGRLMDHINAT 145
+Q + +DIL+ TPGRL+DH+ T
Sbjct: 385 KQRQTVDLTGEDWTNFNLMNYLAETSDLSESLPGYVQRAEPNIDILICTPGRLVDHLRYT 444
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL--TRSDNENRFSDASTFLPSAFGSL- 202
+GFTLEHL +LV+DE DRLL E++Q W+ V+ R D P FGS
Sbjct: 445 KGFTLEHLEWLVIDEADRLLNESFQEWVDVVMNSLDARKD------------PKTFGSSG 492
Query: 203 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL------------- 249
K + + G+ ++ PR K++LSAT+T+D +KL L L +P +
Sbjct: 493 KFMAQLGLPIQSRE---PR--KVILSATMTRDISKLNSLRLANPKLVIIGSAEPTATEEA 547
Query: 250 ------TTGETRYKLPERLESYKL-ICESKLKPLYLVALLQS 284
TT + ++ LP L+ Y + + + KPLYL+ LLQS
Sbjct: 548 EHDGVPTTSDEQFTLPSTLKEYSVSVGDGSQKPLYLLQLLQS 589
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 15/130 (11%)
Query: 290 CIVFTSSVESTHRLC--------TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
++FT S ES RL +L NH G + IK + S KTL A+R GKI
Sbjct: 692 VLIFTKSSESASRLSRLISLLDPSLANHIGTI---IKS----NKSSASRKTLTAYRRGKI 744
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
++V++D +RG+D+E + +VVNYD P + TY+HR GRTARAG+ G +TL+ E
Sbjct: 745 SIIVATDRASRGLDLESLTHVVNYDVPPSVTTYVHRVGRTARAGKEGSAWTLVAHREGHW 804
Query: 402 FKKLLQKADN 411
F + K +
Sbjct: 805 FVNEISKGSD 814
>gi|451847806|gb|EMD61113.1| hypothetical protein COCSADRAFT_192893 [Cochliobolus sativus
ND90Pr]
Length = 518
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 176/382 (46%), Gaps = 62/382 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I L RD+ + TGSGKT ++ LPI+Q L + + L L++ PTR+LA Q+
Sbjct: 115 IQAQAIPLALEGRDVIGLAETGSGKTAAFVLPILQALLEKQ-QSLFGLILAPTRELAYQI 173
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
A+ + + VG + + L K+P I+V
Sbjct: 174 AQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPH---------------------IIV 212
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ T+GF+L+HL Y+V+DE DRLL + L +L++ + + +
Sbjct: 213 ATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHTY---- 268
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+ SAT++ L + L +P+ ++
Sbjct: 269 ---------------------------------LYSATMSSKVESLQRAALQNPVRVSIS 295
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+ +++ L + K K LYL+ LL I+F+ +V T R+ LL G
Sbjct: 296 SSSHQVVSTLLQRYIFLPHKYKDLYLIHLLNDNIGHPTIIFSRTVNETQRIAILLRTLGF 355
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS R L F+ +LV++D RG+D+ V+ VVN+D P+ +
Sbjct: 356 GAIPLH---GQLSQSARLGALNKFKTQSRDILVATDVAARGLDIPAVDLVVNFDLPSDSQ 412
Query: 373 TYIHRAGRTARAGQLGRCFTLL 394
TY+HR GRTARAG+ G+ + +
Sbjct: 413 TYVHRVGRTARAGKSGKAVSFV 434
>gi|225561306|gb|EEH09586.1| ATP-dependent RNA helicase DBP6 [Ajellomyces capsulatus G186AR]
Length = 843
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 153/288 (53%), Gaps = 52/288 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
G + FP+Q AV E +G G DLCI++ TGSGKTL+YALP+V + + LR
Sbjct: 260 GYTEAFPIQAAVL-ELLGTGKHRHSGDLCISAATGSGKTLAYALPLVAGIEQSSYPRLRG 318
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL---------- 109
LVV+PTR+L Q ++ A GL +G AVG +S+ +E + LIK +L
Sbjct: 319 LVVVPTRELVWQAREACELCATGTGLRIGTAVGTASLNEEQASLIKHEQLYSPCTDQIKN 378
Query: 110 ------EAGICYDPEDVLQELQS--------------AVDILVATPGRLMDHINATRGFT 149
++ ++ ++ + E +S +VDIL+ TPGRL+ HI +T+GFT
Sbjct: 379 IQQMSADSWTSFNIQEYISEAESSPSAFPNHVAIPSPSVDILICTPGRLVQHIKSTKGFT 438
Query: 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 209
L HL +LV+DE DRLL E++Q W+ V+ + NR + G
Sbjct: 439 LGHLEWLVIDEADRLLNESFQEWVEVVIPAL---DRNRID-------------VNAKSGG 482
Query: 210 V--ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
V E G+K PRL K++LSAT+T+D +KL L L +P + + + R
Sbjct: 483 VLQELGWKTC-KPRLQKIILSATMTRDISKLQALRLRNPKLVVSDDPR 529
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRS 330
KP+ A + S+ ++F S ES RL LL+ +I + + S
Sbjct: 645 NFKPMAASASVSSV-----LIFARSSESASRLARLLSLMHPPFANRIGTLTKSNKSSTSR 699
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
KTL A+R GK+ +++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G
Sbjct: 700 KTLSAYRNGKLSIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSA 759
Query: 391 FTLLHKDEVKRF 402
+TL+ E + F
Sbjct: 760 WTLVAHSEGRWF 771
>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
Length = 478
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 176/365 (48%), Gaps = 71/365 (19%)
Query: 31 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 90
+ TG+GKTL++ LPI+ L+ + ALV+ PTR+LA+Q+ D FAA+ +GL +G+
Sbjct: 87 AKTGTGKTLAFGLPILHELAIDPYG-ICALVLTPTRELAIQIGDQFAALGTPIGLKIGIV 145
Query: 91 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA---TRG 147
VG + ++L +RP I+VATPGRL DH+ + G
Sbjct: 146 VGGKDRVAQGNDLARRPH---------------------IVVATPGRLADHLESDSENTG 184
Query: 148 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 207
+ L +LV+DE DRLL Y L T+L FLP +L
Sbjct: 185 KLFKKLRFLVLDEADRLLDGQYSIELKTIL---------------NFLPKQRQTL----- 224
Query: 208 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 267
+ SAT+T ++L Q+ + P F ++ ++LE +
Sbjct: 225 ------------------LFSATITSALSQLHQVSVKKPYFFED-KSEIATVDKLEQKYV 265
Query: 268 ICESKLKPLYLVALLQSLGEEK----CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
+C +K YLV ++++ E+ ++F+ + L + + G ++
Sbjct: 266 LCPCAVKDAYLVYVVKNFHEKHPDSLILIFSHTCRECQALAIMFHGLG---FQVGSLHSQ 322
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q R+ +L FR G+I++L+ +D +RG+D+ V+ V+N++ P KTYIHR GR+AR
Sbjct: 323 ISQQERTSSLTKFRSGRIKILICTDVASRGLDIPHVDLVINHNVPQNPKTYIHRVGRSAR 382
Query: 384 AGQLG 388
AG+ G
Sbjct: 383 AGRFG 387
>gi|261191654|ref|XP_002622235.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
gi|239590001|gb|EEQ72644.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
Length = 847
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 151/282 (53%), Gaps = 48/282 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
G ++ FP+Q AV E +G G + DLCI++ TGSGKTL+YALP+V + + LR
Sbjct: 279 GYTTAFPIQAAVL-ELLGNGEHQHSGDLCISAATGSGKTLAYALPLVAGIEQLPLARLRG 337
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL---------- 109
LVV+PTR+L Q +D A GL +G AVG +S+ +E + LIK +L
Sbjct: 338 LVVVPTRELVKQARDACELCATRTGLRIGTAVGTASLKEEQALLIKHDQLYSPSNRRIGN 397
Query: 110 ------EAGICYDPEDVLQELQSA--------------VDILVATPGRLMDHINATRGFT 149
E+ ++ ++ + E++ + +DIL+ TPGRL+DHI +T+GF+
Sbjct: 398 GHQMIAESWASFNFQEYITEVERSHSAFPDHVTTPSPNIDILICTPGRLVDHIRSTKGFS 457
Query: 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 209
LEHL +LV+DE DRLL E++Q W+ V+ + + LP + C
Sbjct: 458 LEHLEWLVIDEADRLLNESFQEWVEVVIPALERVRVDVAGKSGRILPDLGWQI-----C- 511
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
PRL K++LSAT+T+D KL L L +P ++T
Sbjct: 512 ---------KPRLRKIILSATMTRDIAKLNSLRLQNPKLVST 544
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 20/134 (14%)
Query: 290 CIVFTSSVESTHRLCTLL--------NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+VFT S ES RL LL N G L + + S KT+ A+R GK+
Sbjct: 674 VLVFTKSSESASRLARLLVLMHPPFANRIGTL-------AKSSKSSTSRKTISAYRNGKL 726
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +TL+ E +
Sbjct: 727 SIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAWTLVAHREGRW 786
Query: 402 FKKLLQKADNDSCP 415
F + K CP
Sbjct: 787 FANEIVK-----CP 795
>gi|393910350|gb|EFO27145.2| Ddx49-A-prov protein [Loa loa]
Length = 509
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 176/365 (48%), Gaps = 71/365 (19%)
Query: 31 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 90
+ TG+GKTL++ LPI+ L+ + ALV+ PTR+LA+Q+ D FAA+ +GL +G+
Sbjct: 87 AKTGTGKTLAFGLPILHELAIDPY-GICALVLTPTRELAIQIGDQFAALGTPIGLKIGIV 145
Query: 91 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA---TRG 147
VG + ++L +RP I+VATPGRL DH+ + G
Sbjct: 146 VGGKDRVAQGNDLARRPH---------------------IVVATPGRLADHLESDSENTG 184
Query: 148 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 207
+ L +LV+DE DRLL Y L T+L FLP +L
Sbjct: 185 KLFKKLRFLVLDEADRLLDGQYSIELKTIL---------------NFLPKQRQTL----- 224
Query: 208 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 267
+ SAT+T ++L Q+ + P F ++ ++LE +
Sbjct: 225 ------------------LFSATITSALSQLHQVSVKKPYFFED-KSEIATVDKLEQKYV 265
Query: 268 ICESKLKPLYLVALLQSLGEEK----CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
+C +K YLV ++++ E+ ++F+ + L + + G ++
Sbjct: 266 LCPCAVKDAYLVYVVKNFHEKHPDSLILIFSHTCRECQALAIMFHGLG---FQVGSLHSQ 322
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q R+ +L FR G+I++L+ +D +RG+D+ V+ V+N++ P KTYIHR GR+AR
Sbjct: 323 ISQQERTSSLTKFRSGRIKILICTDVASRGLDIPHVDLVINHNVPQNPKTYIHRVGRSAR 382
Query: 384 AGQLG 388
AG+ G
Sbjct: 383 AGRFG 387
>gi|159131798|gb|EDP56911.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
Length = 856
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 158/310 (50%), Gaps = 66/310 (21%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
DLCI++ TGSGKTLSY LP+V L +R L+V+PTR+L Q ++ A GL
Sbjct: 295 DLCISAATGSGKTLSYVLPLVTALKPTPAPRMRGLIVVPTRELVKQAREACELCATGSGL 354
Query: 86 SVGLAVGQSSIADEISELIK-----RPKL------------------------EAGICYD 116
+G AVG +I DE L++ P+L EAG +
Sbjct: 355 RIGSAVGNVAIKDEQRTLMRVDQCYGPELSKQRQTVDLTGEDWTNFSLMNYLAEAGELSE 414
Query: 117 P-EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
P +Q + +DIL+ TPGRL+DH+ T+GFTLEHL +LV+DE DRLL E++Q W+
Sbjct: 415 PLPGYVQRAEPNIDILICTPGRLVDHLRYTKGFTLEHLQWLVIDEADRLLNESFQEWVDV 474
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSL-KTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
V++ S + P FGS K + G+ ++ PR K++LSAT+T+D
Sbjct: 475 VMK----------SLDARKAPKTFGSSGKFMAELGLPIQSRE---PR--KVILSATMTRD 519
Query: 235 PNKLAQLDLHHPLFL-------------------TTGETRYKLPERLESYKL-ICESKLK 274
+KL L L +P + TT + ++ LP L+ Y + + + K
Sbjct: 520 ISKLNSLRLANPKLVIIGSAEPTATEEAEHDGVPTTSDEQFTLPSTLKEYSVSVGDGSQK 579
Query: 275 PLYLVALLQS 284
PLYL+ LLQS
Sbjct: 580 PLYLLQLLQS 589
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 290 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
++FT S ES RL L++ L ++ + S KTL A+R GKI ++V++D
Sbjct: 692 VLIFTKSSESASRLSRLISLLDPSLADRVGTIIKSNKSSASRKTLTAYRRGKISIIVATD 751
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+RG+D+ + +VVNYD P + TY+HR GRTARAG+ G +TL+ E + F + K
Sbjct: 752 RASRGLDLVSLTHVVNYDVPPSVTTYVHRVGRTARAGKEGSAWTLVAHREGRWFVNEISK 811
Query: 409 ADN 411
+
Sbjct: 812 GSD 814
>gi|71679691|gb|AAI00035.1| Ddx51 protein [Danio rerio]
Length = 386
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 112/185 (60%), Gaps = 23/185 (12%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS
Sbjct: 208 GIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSK 267
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R VR +RAL VLPT++LA QV VF+A L V + GQ S A E + L ++
Sbjct: 268 RVVRQVRALAVLPTKELAQQVSKVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRG 324
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G+ + S DI+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+
Sbjct: 325 GVSH----------SLADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQS 374
Query: 172 WLPTV 176
WL V
Sbjct: 375 WLSQV 379
>gi|154282339|ref|XP_001541965.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410145|gb|EDN05533.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 826
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 153/288 (53%), Gaps = 52/288 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
G + FP+Q AV E +G G DLCI++ TGSGKTL+YALP+V + + + LR
Sbjct: 260 GYTEAFPIQAAVL-ELLGTGKHRHSGDLCISATTGSGKTLAYALPLVAGIEHSSYPRLRG 318
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL---------- 109
LVV+PTR+L Q ++ A GL +G AVG +S+ +E + LIK +
Sbjct: 319 LVVVPTRELVWQAREACELCATGTGLRIGTAVGTASLNEEQASLIKHEQFYSPRTDQIKN 378
Query: 110 ------EAGICYDPEDVLQELQS--------------AVDILVATPGRLMDHINATRGFT 149
+A ++ ++ + E ++ +VDIL+ TPGRL+ HI +T+GFT
Sbjct: 379 IQQMSADAWTSFNIQEYISEAENSPSAFPNHVAIPSPSVDILICTPGRLVQHIKSTKGFT 438
Query: 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 209
L HL +LV+DE DRLL E++Q W+ V+ + NR + G
Sbjct: 439 LGHLEWLVIDEADRLLNESFQEWVEVVIPAL---DRNRID-------------VNAKSGG 482
Query: 210 V--ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
V E G+K PRL K++LSAT+T+D +KL L L +P + + + R
Sbjct: 483 VLQELGWKTC-KPRLQKIILSATMTRDISKLQALRLRNPKLVVSDDPR 529
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 273 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSK 331
KP+ A + S+ ++F S ES RL LL+ +I + + S K
Sbjct: 646 FKPMAASASVSSV-----LIFARSSESASRLARLLSLMHPPFANRIGTLTKSNKSSTSRK 700
Query: 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
TL AFR GK+ +++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +
Sbjct: 701 TLSAFRNGKLSIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAW 760
Query: 392 TLLHKDEVKRF 402
TL+ E + F
Sbjct: 761 TLVAHSEGRWF 771
>gi|295656812|ref|XP_002788992.1| ATP-dependent RNA helicase dbp6 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226285824|gb|EEH41390.1| ATP-dependent RNA helicase dbp6 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 815
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 149/278 (53%), Gaps = 60/278 (21%)
Query: 7 FPVQVAVWQ-----ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
FP+Q AV++ E PG DLCI++ TGSGKTL+YALP+V+ + A+ LR LV
Sbjct: 247 FPIQAAVFELLSKGENRHPG----DLCISAATGSGKTLAYALPMVEGIEQSAIPKLRGLV 302
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL------------ 109
++PTR+L Q +D A GL +G AVG +S+ +E + LIKR +L
Sbjct: 303 IVPTRELVKQARDACELCATGTGLRIGTAVGTTSLKEEQALLIKRDQLYSPFASQTLSVQ 362
Query: 110 ----EAGICYDPEDVLQELQSA--------------VDILVATPGRLMDHINATRGFTLE 151
E ++ ++ + E + +DIL+ TPGRL+DHI T+GFTLE
Sbjct: 363 SMSSEDWAAFNVQEYIAEANVSHTALPNHVTTSSPCIDILICTPGRLVDHIRCTQGFTLE 422
Query: 152 HLCYLVVDETDRLLREAYQAWLPTV---LQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 208
HL +LVVDE DRLL E++Q W V L++ R + ++ S F + G C
Sbjct: 423 HLEWLVVDEADRLLNESFQEWTEVVFPALEMERIVSNSK----SGFFLNQLG-------C 471
Query: 209 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
+ R +L K++LSAT+T+D KL L L +P
Sbjct: 472 RIHRR-------QLQKIILSATVTRDIPKLNSLRLRNP 502
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Query: 291 IVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
+VFT S ES RL LL L +I + + + KTL A+R GKI +++++D
Sbjct: 640 LVFTKSSESASRLALLLALMHPPLAKRIGTLTKSNKSTTSRKTLSAYRNGKISIVIATDC 699
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+RG+D+ + +VVNYD PA + +YIHR GRTARAG G +T + E + F + K
Sbjct: 700 ASRGLDLPSLTHVVNYDVPASLTSYIHRVGRTARAGNSGSAWTFVAHREGRWFSNEIMK- 758
Query: 410 DNDSCP 415
CP
Sbjct: 759 ----CP 760
>gi|70996614|ref|XP_753062.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
gi|66850697|gb|EAL91024.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
Length = 856
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 157/310 (50%), Gaps = 66/310 (21%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
DLCI++ TGSGKTLSY LP+V L +R L+V+PTR+L Q ++ A GL
Sbjct: 295 DLCISAATGSGKTLSYVLPLVTALKPTPAPRMRGLIVVPTRELVKQAREACELCATGSGL 354
Query: 86 SVGLAVGQSSIADEISELIK-----RPKL------------------------EAGICYD 116
+G AVG +I DE L++ P+L EAG +
Sbjct: 355 RIGSAVGNVAIKDEQRTLMRVDQCYGPELSKQRQTVDLTGEDWTNFSLMNYLAEAGELSE 414
Query: 117 P-EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
P +Q + +DIL+ TPGRL+DH+ T+GFTLEHL +LV+DE DRLL E++Q W+
Sbjct: 415 PLPGYVQRAEPNIDILICTPGRLVDHLRYTKGFTLEHLQWLVIDEADRLLNESFQEWVDV 474
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSL-KTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
V+ S + P FGS K + G+ ++ PR K++LSAT+T+D
Sbjct: 475 VMN----------SLDARKAPKTFGSSGKFMAELGLPIQSRE---PR--KVILSATMTRD 519
Query: 235 PNKLAQLDLHHPLFL-------------------TTGETRYKLPERLESYKL-ICESKLK 274
+KL L L +P + TT + ++ LP L+ Y + + + K
Sbjct: 520 ISKLNSLRLANPKLVIIGSAEPTATEEAEHDGVPTTSDEQFTLPSTLKEYSVSVGDGSQK 579
Query: 275 PLYLVALLQS 284
PLYL+ LLQS
Sbjct: 580 PLYLLQLLQS 589
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 290 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
++FT S ES RL L++ L ++ + S KTL A+R GKI ++V++D
Sbjct: 692 VLIFTKSSESASRLSRLISLLDPSLADRVGTIIKSNKSSASRKTLTAYRRGKISIIVATD 751
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+RG+D+ + +VVNYD P + TY+HR GRTARAG+ G +TL+ E + F + K
Sbjct: 752 RASRGLDLVSLTHVVNYDVPPSVTTYVHRVGRTARAGKEGSAWTLVAHREGRWFVNEISK 811
Query: 409 ADN 411
+
Sbjct: 812 GSD 814
>gi|325090745|gb|EGC44055.1| ATP-dependent RNA helicase DBP6 [Ajellomyces capsulatus H88]
Length = 826
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 153/288 (53%), Gaps = 52/288 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
G + FP+Q AV E +G G DLCI++ TGSGKTL+YALP+V + + + LR
Sbjct: 260 GYTEAFPIQAAVL-ELLGTGKHRHSGDLCISAATGSGKTLAYALPLVAGIEHSSYPRLRG 318
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL---------- 109
LVV+PTR+L Q ++ A GL +G AVG +S+ +E + LIK +
Sbjct: 319 LVVVPTRELVWQAREACELCATGRGLRIGTAVGTASLNEEQASLIKHEQFYSPSIDQIKN 378
Query: 110 ------EAGICYDPEDVLQELQ--------------SAVDILVATPGRLMDHINATRGFT 149
+A ++ ++ + E + S+VDIL+ TPGRL+ HI +T+GFT
Sbjct: 379 IQQMSADAWTSFNIQEYISEAESSHSAFPNHVAIPSSSVDILICTPGRLVQHIKSTKGFT 438
Query: 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 209
L HL +LV+DE DRLL E++Q W+ V+ + NR + G
Sbjct: 439 LGHLEWLVIDEADRLLNESFQEWVEVVIPAL---DRNRID-------------VNAKSGG 482
Query: 210 V--ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
V E G+K PRL K++LSAT+T+D +KL L L +P + + + R
Sbjct: 483 VLQELGWKTC-KPRLQKIILSATMTRDISKLQVLRLRNPKLVVSDDPR 529
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRS 330
KP+ A + S+ ++F S ES RL LL+ +I + + S
Sbjct: 645 NFKPMAASASVSSV-----LIFARSSESASRLARLLSLMHPPFANRIGTLTKSNKSSTSR 699
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
KTL A+R GK+ +++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G
Sbjct: 700 KTLSAYRNGKLSIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSA 759
Query: 391 FTLLHKDEVKRF 402
+TL+ E + F
Sbjct: 760 WTLVAHSEGRWF 771
>gi|240274402|gb|EER37918.1| ATP-dependent RNA helicase dbp6 [Ajellomyces capsulatus H143]
Length = 826
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 153/288 (53%), Gaps = 52/288 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
G + FP+Q AV E +G G DLCI++ TGSGKTL+YALP+V + + + LR
Sbjct: 260 GYTEAFPIQAAVL-ELLGTGKHRHSGDLCISAATGSGKTLAYALPLVAGIEHSSYPRLRG 318
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL---------- 109
LVV+PTR+L Q ++ A GL +G AVG +S+ +E + LIK +
Sbjct: 319 LVVVPTRELVWQAREACELCATGRGLRIGTAVGTASLNEEQASLIKHEQFYSPSIDQIKN 378
Query: 110 ------EAGICYDPEDVLQELQ--------------SAVDILVATPGRLMDHINATRGFT 149
+A ++ ++ + E + S+VDIL+ TPGRL+ HI +T+GFT
Sbjct: 379 IQQMSADAWTSFNIQEYISEAESSHSAFPNHVAIPSSSVDILICTPGRLVQHIKSTKGFT 438
Query: 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 209
L HL +LV+DE DRLL E++Q W+ V+ + NR + G
Sbjct: 439 LGHLEWLVIDEADRLLNESFQEWVEVVIPAL---DRNRID-------------VNAKSGG 482
Query: 210 V--ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
V E G+K PRL K++LSAT+T+D +KL L L +P + + + R
Sbjct: 483 VLQELGWKTC-KPRLQKIILSATMTRDISKLQVLRLRNPKLVVSDDPR 529
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRS 330
KP+ A + S+ ++F S ES RL LL+ +I + + S
Sbjct: 645 NFKPMAASASVSSV-----LIFARSSESASRLARLLSLMHPPFANRIGTLTKSNKSSTSR 699
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390
KTL A+R GK+ +++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G
Sbjct: 700 KTLSAYRNGKLSIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSA 759
Query: 391 FTLLHKDEVKRF 402
+TL+ E + F
Sbjct: 760 WTLVAHSEGRWF 771
>gi|357013998|ref|ZP_09078997.1| DEAD/DEAH box helicase domain-containing protein, partial
[Paenibacillus elgii B69]
Length = 406
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 178/381 (46%), Gaps = 65/381 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ E I L D+ + TG+GKTL++ALPI++ + N A ++AL+V PTR+LA+Q+
Sbjct: 30 IQSEAIPVALAGHDIIAQAQTGTGKTLAFALPILENI-NPANPNVQALIVTPTRELAIQI 88
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ AP GL V A G D E +++L+ + I+V
Sbjct: 89 TEEIKRWAPLKGLRVLSAYG---------------------GQDVERQIRKLEGNIHIIV 127
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ L L LV+DE D++L + +LP V+++
Sbjct: 128 ATPGRLLDHLR-RETVQLHKLSVLVLDEADQML---HMGFLPEVVEII------------ 171
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+ PS R ++ SAT+ +LA+ + P+ +
Sbjct: 172 SVTPS-----------------------RRQTLLFSATMPPRIRQLAKEYMRQPVEIEVK 208
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
R L E +E + + K L L + + EE + + R L+N E
Sbjct: 209 SKRVTLDE-IEQVVIQTTDRGK---LETLCKLIDEENPYLAMIFCRTKLRASKLMNELAE 264
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
E G Q+ R + +K FRE KIQ+LV++D RG+DVEG+ +V NYD P +
Sbjct: 265 RGYSCDELHGDLTQAKREQVMKRFREAKIQLLVATDIAARGLDVEGITHVFNYDIPHDAE 324
Query: 373 TYIHRAGRTARAGQLGRCFTL 393
+YIHR GRT RAGQ G+ FT
Sbjct: 325 SYIHRIGRTGRAGQTGKAFTF 345
>gi|452002395|gb|EMD94853.1| hypothetical protein COCHEDRAFT_1128751 [Cochliobolus
heterostrophus C5]
Length = 815
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/415 (26%), Positives = 194/415 (46%), Gaps = 68/415 (16%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 82
+D+ + TGSGKT ++ +PI++ L + + R + +PTR+LA+Q +V +A
Sbjct: 327 KDVVGGAETGSGKTAAFLIPILERLLYRQKKIPTTRVAIFMPTRELAVQCFNVATKLASF 386
Query: 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 142
++ L G S ++ + L RP D+++ATPGR +DH+
Sbjct: 387 TDITFALMAGGFSSREQEAVLKTRP---------------------DVVIATPGRFIDHM 425
Query: 143 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 202
+ T F +E+L LV+DE DR+L E +++ L +L T +P + +
Sbjct: 426 HNTAAFQVENLEILVLDEADRMLEEGFESQLNEIL---------------TTIPKSRQT- 469
Query: 203 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
M+ SAT+T +KL ++ + P+ L + +
Sbjct: 470 ----------------------MLFSATMTSSVDKLIRIGMDKPVRLMVDSKKQTVKGLT 507
Query: 263 ESYKLICESKLKP--LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+ + + + K YL+ + + + EK IVF + HR+ + G +K E
Sbjct: 508 QEFVRLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCG---LKASEL 564
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q R + ++AFR GK L+++D +RG+D++ V+ V+NY+ P + Y+HR GR
Sbjct: 565 HGNMSQEQRIQAVEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQTHEIYLHRVGR 624
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLRPVYKS 433
TARAG+ GR TL + + K K+ ++ + + S +P+ E KS
Sbjct: 625 TARAGRSGRACTLAAEPDRKVVKQAVKASREQGAKVVSRQVPAEETEKWMKKIKS 679
>gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis]
Length = 456
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 189/407 (46%), Gaps = 77/407 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCL 57
+GI PVQ E P + + RD + TGSGKT ++ LP++Q LS + CL
Sbjct: 20 LGIHKPTPVQ-----ENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQKLSEDPYGIFCL 74
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
V+ PTR+LA Q+ + F + +GL + VG + + SEL +P
Sbjct: 75 ---VLTPTRELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQASELSNQPH--------- 122
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
++VATPGRL DHI ++ F++ + +L++DE DRLL + +
Sbjct: 123 ------------VVVATPGRLADHIRSSSTFSMSKIQFLIMDEADRLLEQGCTDFT---- 166
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
D T +P+ +T ++ SATLT +
Sbjct: 167 -----------KDLETIMPALPAKRQT--------------------LLFSATLTDTLQE 195
Query: 238 LAQLDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIV 292
L + ++ P F + ETR + L+ ++ K+K YLV L+Q+ ++ I+
Sbjct: 196 LKNIAMNKPFFWESKSETRT--VDELDQRYILTPEKVKDAYLVHLIQTFTDQHDDWSIII 253
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
FT++ ++ L +L F I + + +Q R L F+ ++L+++D R
Sbjct: 254 FTNTCKNCQILTMMLQQFNFPTISL---HSMMKQKQRFANLAKFKASVYKILIATDVAAR 310
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
G+D+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 311 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDI 357
>gi|226295059|gb|EEH50479.1| ATP-dependent RNA helicase dbp6 [Paracoccidioides brasiliensis
Pb18]
Length = 852
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 148/280 (52%), Gaps = 54/280 (19%)
Query: 2 GISSLFPVQVAVWQ-----ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 56
G+ FP+Q AV + E PG DLCI++ TGSGKTL+Y LP+V+ + A+
Sbjct: 278 GLIRPFPIQAAVLELLFKGENRHPG----DLCISAATGSGKTLAYTLPMVEGIEQSAIPQ 333
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL------- 109
LR LV++PTR+L Q +D + GL +G AVG +S+ +E + LIK +L
Sbjct: 334 LRGLVIVPTRELVKQARDACELCSSGTGLRIGTAVGTTSLKEEQALLIKLDQLYSPFSSQ 393
Query: 110 ---------EAGICYDPEDVLQELQSA--------------VDILVATPGRLMDHINATR 146
E ++ ++ + E + +DIL++TPGRL+DHI T+
Sbjct: 394 TLSEQSMSSEDWAAFNLQEYIAEANVSHKALPNHVTTSSPCIDILISTPGRLVDHIRCTQ 453
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 206
GFTLEHL +LVVDE DRLL E++Q W+ VL + + S + FL + G
Sbjct: 454 GFTLEHLEWLVVDEADRLLNESFQEWIKVVLPALEMERIDSNSKSGIFL-NQLG------ 506
Query: 207 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
C V R +L K++LSAT+T+D KL L L +P
Sbjct: 507 -CQVRRR-------QLQKIILSATMTRDIPKLISLRLRNP 538
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Query: 291 IVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
+VFT S ES RL LL L +I + + + +TL A+R GK+ +++++D
Sbjct: 677 LVFTKSSESASRLARLLALMHPPLAKRIGTLTKSNKSTTSRRTLSAYRNGKVSIVIATDC 736
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+RG+D+ + +VVNYD PA + +YIHR GRTARAG G +T + E + F + K
Sbjct: 737 ASRGLDLPSLTHVVNYDVPASLTSYIHRVGRTARAGNSGSAWTFVAHREGRWFSNEIMK- 795
Query: 410 DNDSCP 415
CP
Sbjct: 796 ----CP 797
>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
gi|118595361|sp|Q0V1Z7.1|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
Length = 808
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 200/422 (47%), Gaps = 70/422 (16%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 58
+G + P+Q + I + +D+ + TGSGKT ++ +PI++ L R V R
Sbjct: 303 IGFTEPTPIQA----KAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTR 358
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
+ +PTR+LA+Q +V +A ++ L G G +
Sbjct: 359 VAIFMPTRELAVQCFNVATKLASFTDITFALLAG-------------------GFSSREQ 399
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+V+ L++ D+++ATPGR +DH++ T F +EHL LV+DE DR+L E ++ L +L
Sbjct: 400 EVM--LKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEIL- 456
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
T +P + + M+ SAT+T +KL
Sbjct: 457 --------------TTIPKSRQT-----------------------MLFSATMTSTVDKL 479
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP--LYLVALLQSLGEEKCIVFTSS 296
++ + P+ L ++ + + + + + K YL+ + + + E+ I+F
Sbjct: 480 IRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYICEKIYTERVIIFFRQ 539
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ HR+ + G +K E G Q R + ++AFR GK L+++D +RG+D+
Sbjct: 540 KKEAHRVRVVFALCG---LKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDVASRGLDI 596
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+ V+ V+NY+ P + Y+HR GRTARAG+ GR TL + + K K+ ++++ + +
Sbjct: 597 KNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQSRDQGSKV 656
Query: 417 HS 418
S
Sbjct: 657 VS 658
>gi|327356903|gb|EGE85760.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ATCC 18188]
Length = 848
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 150/282 (53%), Gaps = 48/282 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
G ++ FP+Q AV E +G G + DLCI++ TGSGKTL+YALP+V + + LR
Sbjct: 279 GYTTAFPIQAAVL-ELLGNGEHQHSGDLCISAATGSGKTLAYALPLVAGIEQLPLARLRG 337
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL---------- 109
LVV+PTR+L Q +D A GL +G AVG +S+ +E + LIK +L
Sbjct: 338 LVVVPTRELVKQARDACELCATRTGLRIGTAVGTASLKEEQALLIKHDQLYSPSNRRIGN 397
Query: 110 ------EAGICYDPEDVLQELQSA--------------VDILVATPGRLMDHINATRGFT 149
E+ ++ ++ + E++ + +DIL+ TPGRL+DHI +T+GF+
Sbjct: 398 GHQMIAESWASFNFQEYITEVERSHSAFPDHVTTPSPNIDILICTPGRLVDHIRSTKGFS 457
Query: 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 209
LEHL +LV+DE DRLL E++Q W+ V+ + + LP + C
Sbjct: 458 LEHLEWLVIDEADRLLNESFQEWVEVVIPALERVRVDVAGKSGRILPDLGWQI-----C- 511
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
PRL K++LSAT+T+D KL L L +P + +
Sbjct: 512 ---------KPRLRKIILSATMTRDIAKLNSLRLQNPKLVVS 544
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 20/134 (14%)
Query: 290 CIVFTSSVESTHRLCTLL--------NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+VFT S ES RL LL N G L + + S KT+ A+R GK+
Sbjct: 675 VLVFTKSSESASRLARLLVLMHPPFANRIGTL-------AKSSKSSTSRKTISAYRNGKL 727
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +TL+ E +
Sbjct: 728 SIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAWTLVAHREGRW 787
Query: 402 FKKLLQKADNDSCP 415
F + K CP
Sbjct: 788 FANEIVK-----CP 796
>gi|239612589|gb|EEQ89576.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ER-3]
Length = 845
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 150/282 (53%), Gaps = 48/282 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
G ++ FP+Q AV E +G G + DLCI++ TGSGKTL+YALP+V + + LR
Sbjct: 279 GYTTAFPIQAAVL-ELLGNGEHQHSGDLCISAATGSGKTLAYALPLVAGIEQLPLARLRG 337
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL---------- 109
LVV+PTR+L Q +D A GL +G AVG +S+ +E + LIK +L
Sbjct: 338 LVVVPTRELVKQARDACELCATRTGLRIGTAVGTASLKEEQALLIKHDQLYSPSNRRIGN 397
Query: 110 ------EAGICYDPEDVLQELQSA--------------VDILVATPGRLMDHINATRGFT 149
E+ ++ ++ + E++ + +DIL+ TPGRL+DHI +T+GF+
Sbjct: 398 GHQMIAESWASFNFQEYITEVERSHSAFPDHVATPSPNIDILICTPGRLVDHIRSTKGFS 457
Query: 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 209
LEHL +LV+DE DRLL E++Q W+ V+ + + LP + C
Sbjct: 458 LEHLEWLVIDEADRLLNESFQEWVEVVIPALERVRVDVAGKSGRILPDLGWQI-----C- 511
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
PRL K++LSAT+T+D KL L L +P + +
Sbjct: 512 ---------KPRLRKIILSATMTRDIAKLNSLRLQNPKLVVS 544
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 20/134 (14%)
Query: 290 CIVFTSSVESTHRLCTLL--------NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+VFT S ES RL LL N G L + + S KT+ A+R GK+
Sbjct: 672 VLVFTKSSESASRLARLLVLMHPPFANRIGTL-------AKSSKSSTSRKTISAYRNGKL 724
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +TL+ E +
Sbjct: 725 SIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAWTLVAHREGRW 784
Query: 402 FKKLLQKADNDSCP 415
F + K CP
Sbjct: 785 FANEIVK-----CP 793
>gi|225681311|gb|EEH19595.1| ATP-dependent RNA helicase DBP6 [Paracoccidioides brasiliensis
Pb03]
Length = 836
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 147/275 (53%), Gaps = 54/275 (19%)
Query: 7 FPVQVAVWQ-----ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
FP+Q AV + E PG DLCI++ TGSGKTL+YALP+V+ + A+ LR LV
Sbjct: 289 FPIQAAVLELLFKGENRHPG----DLCISAATGSGKTLAYALPMVEGIEQSAIPKLRGLV 344
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL------------ 109
++PTR+L Q +D + GL +G AVG +S+ +E + LIK +L
Sbjct: 345 IVPTRELVKQARDACELCSSGTGLRIGTAVGTTSLKEEQALLIKLDQLYSPFSSQTLSEQ 404
Query: 110 ----EAGICYDPEDVLQELQSA--------------VDILVATPGRLMDHINATRGFTLE 151
E ++ ++ + E + +DIL++TPGRL+DHI T+GFTLE
Sbjct: 405 SMSSEDWAAFNLQEYIAEANVSHKALPNHVTTSSPCIDILISTPGRLVDHIRCTQGFTLE 464
Query: 152 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 211
HL +LVVDE DRLL E++Q W+ VL + + S + FL + G + RR
Sbjct: 465 HLEWLVVDEADRLLNESFQEWIKVVLPALEMERIDSNSKSGIFL-NQLG-FQIHRR---- 518
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
+L K++LSAT+T+D KL L L +P
Sbjct: 519 ---------QLQKIILSATMTRDIPKLISLRLRNP 544
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 291 IVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
+VFT S ES RL LL L +I + + + +TL A+R GK+ +++++D
Sbjct: 683 LVFTKSSESASRLARLLALMHPPLAKRIGTLTKSNKSTTSRRTLSAYRNGKVSIVIATDC 742
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRA-GRTARA--GQLG 388
+RG+D+ + +VVNYD PA + +YIHR GR AR GQ G
Sbjct: 743 ASRGLDLPSLTHVVNYDVPASLTSYIHRVDGRLARGTPGQHG 784
>gi|451852848|gb|EMD66142.1| hypothetical protein COCSADRAFT_179496 [Cochliobolus sativus
ND90Pr]
Length = 814
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 186/387 (48%), Gaps = 66/387 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 82
+D+ + TGSGKT ++ +PI++ L + + R + +PTR+LA+Q +V +A
Sbjct: 326 KDVVGGAETGSGKTAAFLIPILERLLYRQKKIPTTRVAIFMPTRELAVQCFNVATKLASF 385
Query: 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 142
++ L G S ++ + L RP D+++ATPGR +DH+
Sbjct: 386 TDITFALMAGGFSSREQEAVLKTRP---------------------DVVIATPGRFIDHM 424
Query: 143 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 202
+ T F +E+L LV+DE DR+L E +++ L +L T +P S
Sbjct: 425 HNTAAFQVENLEILVLDEADRMLEEGFESQLNEIL---------------TTIPK---SR 466
Query: 203 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+T M+ SAT+T +KL ++ + P+ L + +
Sbjct: 467 QT--------------------MLFSATMTSSVDKLIRIGMDKPVRLMVDAKKQTVKGLT 506
Query: 263 ESYKLICESKLKP--LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+ + + + K YL+ + + + EK IVF + HR+ + G +K E
Sbjct: 507 QEFVRLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCG---LKASEL 563
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q R + ++AFR GK L+++D +RG+D++ V+ V+NY+ P + Y+HR GR
Sbjct: 564 HGNMSQEQRIQAVEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQTHEIYLHRVGR 623
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKLLQ 407
TARAG+ GR TL + + K K+ ++
Sbjct: 624 TARAGRSGRACTLAAEPDRKVVKQAVK 650
>gi|54024485|ref|YP_118727.1| RNA helicase [Nocardia farcinica IFM 10152]
gi|54015993|dbj|BAD57363.1| putative RNA helicase [Nocardia farcinica IFM 10152]
Length = 518
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 196/425 (46%), Gaps = 78/425 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRA 59
GI + FP+Q A T+ L +D+ PTGSGKTL++ LP++ L+ A R R
Sbjct: 49 GIDAPFPIQAA----TVPDALAGKDVLGRGPTGSGKTLAFGLPMLVRLAGNAAAPRRPRG 104
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV++PTR+LA Q++ A A+GL V VG + I + L +
Sbjct: 105 LVLVPTRELAAQIERALDEPALALGLRVASVVGGAPIKRQADRLAR-------------- 150
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
VD+L+ATPGRL D I A L+ + +DE D + A +LP V +L
Sbjct: 151 -------GVDLLIATPGRLSDLI-AQGAAALDDVSITALDEADHM---ADMGFLPQVTRL 199
Query: 180 ---TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
T +D + +++ SATL + +
Sbjct: 200 LDRTPADGQ--------------------------------------RLLFSATLDGEVD 221
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
KL + L +P+ +T + S+ L+ K ++A + + E I+F +
Sbjct: 222 KLVKRYLRNPVTHSTAPPSASV--ATMSHHLLYVRKADKRAVIAEIAAR-EGLTILFVRT 278
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
RL L G I G + Q+ R++TL AF +G + VLV++D RG+ V
Sbjct: 279 KHGADRLAKQLRAAG---IAAGALHGGKAQNNRTRTLAAFADGSVPVLVTTDVAARGIHV 335
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+G++ VV+ D PA K Y+HRAGRTARAG+ G TL+ +DE +K+ +KA D +
Sbjct: 336 DGISLVVHADPPAEPKAYLHRAGRTARAGEDGVVVTLVTEDERADVEKMTRKAGVDVVGV 395
Query: 417 HSIPS 421
+ P
Sbjct: 396 NVTPG 400
>gi|440632967|gb|ELR02886.1| hypothetical protein GMDG_01108 [Geomyces destructans 20631-21]
Length = 870
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 166/339 (48%), Gaps = 84/339 (24%)
Query: 2 GISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
GI S F VQ AV + GP D+ +++ TGSGKTL+Y LP+V+ +S V LR L
Sbjct: 298 GIPSAFAVQAAVLSLLLPGPQKQPGDVLVSAATGSGKTLAYVLPMVEDISQTMVTQLRGL 357
Query: 61 VVLPTRDLALQVKDVFAAIAPAVG------LSVGLAVGQSSIADEISELIKRPKLEAGIC 114
+V+PTR+L Q ++V A A G ++VG+A+G ++ E S L+K+
Sbjct: 358 IVMPTRELVTQAREVSDMCANAYGTGSRRHINVGVAIGNQTLRQEQSSLMKQ-----DFV 412
Query: 115 YDPE-----------------------------------DVLQELQSAVDILVATPGRLM 139
YDP+ D + + VDI++ TPGRL+
Sbjct: 413 YDPKEYRARQERINAAWSGSSVGDEVANLLMEEDISTPIDHIVQYSPKVDIMICTPGRLV 472
Query: 140 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 199
+H+ +T GFTLEHL +LV+DE D+LL +++Q WL TV+ + T PS
Sbjct: 473 EHLKSTPGFTLEHLKWLVIDEADKLLDQSFQQWLETVMA--------SLTSRETAAPSQL 524
Query: 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF--------LTT 251
S KD R+ K+VLSAT+T+D L+QL L+ P F +
Sbjct: 525 RS-------------KD----RITKVVLSATMTRDIGLLSQLKLNKPKFVVLEGNEGMGA 567
Query: 252 GETRY---KLPERL-ESYKLICESKLKPLYLVALLQSLG 286
GE + LP L ES I + LKPLYL+ +L+ G
Sbjct: 568 GEGQVDTLNLPHTLHESAIKIDQEGLKPLYLLEVLKRNG 606
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333
KP + L++ G ++FT S ES RL LL + + E + + R +TL
Sbjct: 688 KPAGNIKLVKPHG---VLIFTKSNESAVRLFRLLALL--VPSRASEIGAITSTTSRKRTL 742
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
++FR G + VL++SD + RG+D+ + +VVNYD P I +Y+HR GRTARAG+ G TL
Sbjct: 743 RSFRSGALSVLIASDLVARGLDLPNLAHVVNYDMPTSITSYVHRVGRTARAGKEGAATTL 802
Query: 394 LHKDEVKRF 402
E + F
Sbjct: 803 FSATEGRWF 811
>gi|170095563|ref|XP_001879002.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646306|gb|EDR10552.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 654
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 179/394 (45%), Gaps = 75/394 (19%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAP 81
+D+ + TGSGKTL++ +P+++ L R A L AL++ PTR+LA+Q+ DV +I
Sbjct: 39 KDVLGAAQTGSGKTLAFLVPVLEILYRRKWGAADGLGALIISPTRELAVQIFDVLRSIGG 98
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G ++ DE L S ++ILVATPGRL+ H
Sbjct: 99 YHSFSAGLVIGGKNLKDERDRL----------------------SRMNILVATPGRLLQH 136
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T GF ++L LV+DE DR+L +Q L +L + LP + +
Sbjct: 137 MDQTVGFDADNLQVLVLDEADRILDMGFQKTLAALL---------------SHLPKSRQT 181
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKL 258
L + SAT TQ + LA+L L P+++ + +
Sbjct: 182 L-----------------------LFSATQTQSVSDLARLSLKDPVYVGINVASSSTSTM 218
Query: 259 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST----HRLCTLLNHFGELR 314
P+ LE + +ICE K L + +++ + K IVF SS + C + H G
Sbjct: 219 PQNLEQHYVICELDKKLDVLWSFIKTHLQSKIIVFMSSCKQVRFVFETFCKM--HPG--- 273
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
+ + G Q+QS R F VL ++D RG+D V+ V+ D P TY
Sbjct: 274 VPLLHLHGKQKQSARLTMYTKFSSISHAVLFATDIAARGLDFPSVDWVLQMDAPEDADTY 333
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
IHR GRTAR G+ L E + K LQK
Sbjct: 334 IHRVGRTARYESKGKALLFLMPSEEEGMKVALQK 367
>gi|422294697|gb|EKU21997.1| ATP-dependent RNA helicase DDX23/PRP28 [Nannochloropsis gaditana
CCMP526]
Length = 820
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 197/422 (46%), Gaps = 69/422 (16%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-TLSNRAVRCLR- 58
MG P+Q A I G+ RD+ + TGSGKT ++A+P++ L+ A R
Sbjct: 404 MGWKEPSPIQRAA----IPVGMGRRDIIGIAETGSGKTGAFAIPMINYCLTLPAEHRTRT 459
Query: 59 ------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
ALV+ PTR+LA Q++ A + GL VG I
Sbjct: 460 PEEGPLALVMAPTRELAEQIEAQVAILIEGTGLKSCSGVGGKPI---------------- 503
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-- 170
ED L+ VDIL+ TPGRL D I+ +R L Y+V+DE DR++ ++
Sbjct: 504 -----EDQAFALREGVDILIGTPGRLKDLID-SRYLVLNQCNYIVLDEADRMVDMGFEEQ 557
Query: 171 --AWLPTVLQLTRSDNE---NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 225
A L T+ L +S+NE +R +DA+ K + R+ M
Sbjct: 558 VVAVLDTMGGLLKSENEEEADRQADAAQ---------------------KGEQLYRVTAM 596
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS- 284
SAT+ ++A+ L P + GE +R+E + K +V LL S
Sbjct: 597 -FSATMPPAVERIARSYLRAPATIKIGEANSGKNKRIEQRLIFTTEPGKRKAVVDLLTSP 655
Query: 285 LGEEKCIVFTSSVESTHRLCTLL-NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
E+K IVF ++ R C +L H + RI G + Q R +L+AFR G V
Sbjct: 656 KKEDKFIVFVNA----KRACDVLARHLEQTRISCGILHGGKSQDQREASLEAFRNGVFTV 711
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
LV++D RG+D+ V++V+NYD PA I+ Y HR GRT RAG+ G TLL +++ + F
Sbjct: 712 LVATDVAARGLDIPDVSHVINYDMPAKIENYCHRIGRTGRAGKEGLATTLLTENDSEVFH 771
Query: 404 KL 405
L
Sbjct: 772 DL 773
>gi|121700629|ref|XP_001268579.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
gi|119396722|gb|EAW07153.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
Length = 848
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 159/320 (49%), Gaps = 76/320 (23%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
DLCI++ TGSGKTLSY LP+V L +R L+V+PTR+L Q ++ A GL
Sbjct: 295 DLCISAATGSGKTLSYVLPLVTALEPTPAPRMRGLIVVPTRELVKQAREACELCAAGSGL 354
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPE--------------------------- 118
VG AVG +I DE L++ + CY PE
Sbjct: 355 RVGSAVGNVAIKDEQRTLMRIDQ-----CYGPEISKQRQTVDLTGEDWTKFNLLDYIAEA 409
Query: 119 --------DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
+Q+ + VDIL+ TPGRL+DH+ T+GFTLEHL +LV+DE DRLL E++Q
Sbjct: 410 GDLSESLPGYIQKAEPNVDILICTPGRLVDHLRYTKGFTLEHLEWLVIDEADRLLNESFQ 469
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSL-KTIRRCGVERGFKDKPYPRLVKMVLSA 229
W+ V+ S + P AFGS + + G+ K+ PR K++LSA
Sbjct: 470 EWVDVVMN----------SLDARKSPKAFGSSGQFMAELGLPIQVKE---PR--KVILSA 514
Query: 230 TLTQDPNKLAQLDLHHPLFL---------------TTGETRYKLPERLESYKL-ICESKL 273
T+T+D +KL L L +P + + ++ +P L+ Y + + +
Sbjct: 515 TMTRDVSKLNSLRLANPKLVIVSSADPTSTEDGGHVKSDEQFTIPRTLKEYSVSVGDGSQ 574
Query: 274 KPLYLVALLQS----LGEEK 289
KPLYL++LL+S L EE+
Sbjct: 575 KPLYLLSLLRSHINVLAEEQ 594
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 290 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
++FT S ES RL L++ L ++ + S KTL A+R GKI ++V++D
Sbjct: 676 VLIFTKSSESASRLSRLISLLDPSLANQVGTIIKSNKSSASRKTLTAYRRGKISIIVATD 735
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+RG+D++ + +VVNYD P + TY+HR GRTARAG+ G +TL+ E + F+ + K
Sbjct: 736 RASRGLDLQSLTHVVNYDVPPSVTTYVHRVGRTARAGKKGSAWTLVAHREGRWFENEISK 795
Query: 409 ADN 411
A +
Sbjct: 796 ASD 798
>gi|399077018|ref|ZP_10752254.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398036112|gb|EJL29334.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 663
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 188/414 (45%), Gaps = 79/414 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRA-VRCLRA 59
G ++ P+Q A I L +D+ + TG+GKT ++ LP++ L S RA R RA
Sbjct: 21 GYTTATPIQAAA----IPVALAGQDVLGIAQTGTGKTAAFTLPMIDKLASGRAKARMPRA 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV F A LS L +G S D++
Sbjct: 77 LVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQV------------------- 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++L VD+L+ATPGRL+DH G + + +VVDE DR+L
Sbjct: 118 --KKLDRGVDVLIATPGRLLDHFERG-GLLMTGVQIMVVDEADRMLDMG----------- 163
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
F+P +ER FK P P+ + SAT+ + +L
Sbjct: 164 --------------FIPD------------IERIFKMTP-PKKQTLFFSATMPPEITRLT 196
Query: 240 QLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
+ L P+ + TT E +L ++ S + K K L L AL++ E IVF
Sbjct: 197 KQFLRDPVRIEASRPATTNENITQLMVKVPS----SDPKAKRLALRALIEKAQIETGIVF 252
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
+ + L G G QS R KTL AFR+G +++LV+SD RG
Sbjct: 253 CNRKTEVDVVAKSLKSHG---FDAAAIHGDLDQSQRMKTLAAFRDGSLKILVASDVAARG 309
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
+D+ V++V NYD P + Y+HR GRT RAG+ G + L+ + K F K+++
Sbjct: 310 LDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGIAYMLVTPADDKGFDKVVK 363
>gi|268575342|ref|XP_002642650.1| Hypothetical protein CBG00032 [Caenorhabditis briggsae]
Length = 640
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 199/428 (46%), Gaps = 65/428 (15%)
Query: 3 ISSLFPVQVAVWQETIG-----PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
IS+ FPVQ +V P L RD+ I +PTGSGKT+ Y LP++ + +R L
Sbjct: 180 ISTWFPVQYSVLPALFKDIQAPPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSRPSNSL 239
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
A++++P + L Q+ + F G + +++ ++ D K + + DP
Sbjct: 240 HAVILVPVQTLVTQIVEEFRRWNGPEGTAKVVSLSGANDFD---------KEQRQLSADP 290
Query: 118 EDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
+V +VATP RL+ H+ A L L +L+VDE DR+ + + WL
Sbjct: 291 PNV----------IVATPARLVQHLTAQIPPPIDLSKLRFLIVDEADRMGKLMREEWL-- 338
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
D FL G ++ R + + + P+ K+VLSATL++D
Sbjct: 339 --------------DLVEFL---CGGME--RVACLNDVIRQRRAPQ--KIVLSATLSKDV 377
Query: 236 NKLAQLDLHHPLFLTTGETRYK----------------LPERLESYKLICESKLKPLYLV 279
+L +L P + T+ K LP + ++ +SK PL +
Sbjct: 378 EELHLWNLFKPKLFSATATKAKDITSTVPMDHISGRLALPSSISHRLIVSDSKFHPLAVY 437
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
+Q + ++F + V S++RL +L + ++ ++ R K L+ F +
Sbjct: 438 QQIQRNKFNRTLIFVNEVSSSNRLAHVLKELSQGEFEVDYFTAQLFGKRRYKMLEKFNKN 497
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+VL+ SD + RG D+ V+ V+NY+ PA K ++HRAGRT RAGQ G ++ K+
Sbjct: 498 PNRVLICSDVLARGTDLNRVDCVINYNLPADDKLFVHRAGRTGRAGQEGYVISVGDKETK 557
Query: 400 KRFKKLLQ 407
+ F K+L+
Sbjct: 558 RLFVKMLK 565
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 190/415 (45%), Gaps = 81/415 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RA-VRCLRA 59
G ++ P+Q A I L +D+ + TG+GKT ++ LP++ L N RA R RA
Sbjct: 21 GYTTATPIQAAA----IPVALAGQDVLGIAQTGTGKTAAFTLPLIDKLMNGRAKARMPRA 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV F A LS L +G S D+
Sbjct: 77 LVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQ-------------------- 116
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L VD+L+ATPGRL+DH RG + + +LVVDE DR+L
Sbjct: 117 -EKKLDRGVDVLIATPGRLLDHFE--RGKLLMTGVQFLVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER FK P P+ + SAT+ + +L
Sbjct: 164 ---------------FIPD------------IERIFKMTP-PKKQTLFFSATMPPEITRL 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
+ L P+ + TT E +L ++ S + K K L L AL++ E IV
Sbjct: 196 TKQFLKDPVRIEASRPATTNENITQLMVKVPS----SDPKAKRLALRALIEKAQIETGIV 251
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F + + L G G QS R+KTL AFR+G +++LV+SD R
Sbjct: 252 FCNRKTEVDVVAKSLKSHG---FDAAAIHGDLDQSQRTKTLAAFRDGSLKILVASDVAAR 308
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
G+D+ V++V NYD P + Y+HR GRT RAG+ G + L+ + K F K+++
Sbjct: 309 GLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGFDKVVK 363
>gi|78776809|ref|YP_393124.1| DEAD/DEAH box helicase [Sulfurimonas denitrificans DSM 1251]
gi|78497349|gb|ABB43889.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 432
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 196/418 (46%), Gaps = 88/418 (21%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRALVVLPTRDLALQVKDVFAA 78
L + D+ + TG+GKT ++ L ++Q L S+ R LR LV+ PTR+L++Q+ + +
Sbjct: 36 LAKSDVFATAQTGTGKTAAFGLGMLQRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQS 95
Query: 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
A +G+++ + VG D E + L+ VDI++ATPGR+
Sbjct: 96 YAKNMGINIAVLVGGK---------------------DLESQQKILKEGVDIVIATPGRV 134
Query: 139 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
++H++ +G +L H+ V+DE DR+L
Sbjct: 135 LEHVD--KGLSLSHVEIFVLDEADRML--------------------------------D 160
Query: 199 FGSLKTIRRCGVERGFKDKPYPRLVK----MVLSATLTQDPNKLAQLDLHHPLFLTTGET 254
G +K IRR +P L K ++ SAT + KL++L L P F+ T +
Sbjct: 161 MGFMKEIRRI----------HPILPKRHQTLLFSATFSDKVRKLSKLILTKPAFIETSKK 210
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
+ + L+ K PL L ++ S + +VFT + S L L G
Sbjct: 211 NSTVDTINQVAYLVDTEKKAPL-LAYIIGSRNFRQVLVFTRTKASADLLVVELKKDG--- 266
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
+K G + Q+ R KTL F+EGKI+VLV++D +RG+D+E + V+NY+ P+ + Y
Sbjct: 267 LKCGIIHGDKTQANRLKTLNEFKEGKIKVLVATDIASRGLDIEELPFVINYELPSIPEDY 326
Query: 375 IHRAGRTARAGQLGRCFTLL---HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 429
+HR GRT RAG+ G +L+ K ++K +KL+ IP +I P
Sbjct: 327 VHRVGRTGRAGRDGMAISLIDIYEKFDIKDIEKLIG---------MKIPQEIIAGFEP 375
>gi|307179995|gb|EFN68085.1| Probable ATP-dependent RNA helicase DDX31 [Camponotus floridanus]
Length = 871
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 205/438 (46%), Gaps = 86/438 (19%)
Query: 11 VAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLS------NRAVRCLRALVVL 63
V Q+ I P +F +D+ I S TGSGKTL+YALPIV+ L NR L AL+V+
Sbjct: 312 TTVQQKAI-PEIFSGKDVLIRSQTGSGKTLAYALPIVELLHKIRPKLNRN-SGLSALIVV 369
Query: 64 PTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 122
PTR+LALQ + F + P + G +G KR +A
Sbjct: 370 PTRELALQTYECFIKLVKPFTWIVPGYIIGGE----------KRKAEKA----------- 408
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 182
L+ +IL+ TPGRL+DHI T+ L + Y ++DE DR+L Y+ + + Q S
Sbjct: 409 RLRKGCNILITTPGRLLDHIKHTKALRLNEVRYFILDEADRMLEMGYEKNISDMNQEFDS 468
Query: 183 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 242
EN +E+ KD R ++LSATLTQ KLA L
Sbjct: 469 KAEN--------------------AQNIEQDCKDVTQSRRKTILLSATLTQAVEKLAGLA 508
Query: 243 LHHPLFL--------TTGETRYKLPERL-------ESYKLICESKLKPL----YLVALLQ 283
+++P+F+ T+G ++ E L +SY ++ KL+ + Y+V+ Q
Sbjct: 509 MYNPIFVDAAKENLETSGGDTSEINEDLIVPQSVIQSY-IVTPPKLRMVTLSAYIVSRCQ 567
Query: 284 SLGEEKCIVFTSSVE----STHRLCTLLNHFGE----------LRIKIKEYSGLQRQSVR 329
+ G+ K ++F ++ + T L ++L + + ++ + G Q R
Sbjct: 568 TPGQHKILIFMATQDMVDYHTEILSSILTESVDDNDDEDSDPLVNVEFFKLHGNMTQKER 627
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
++ K F K VL+ +D RG+D+ V+ VV Y P + Y+HR GRTARAG G
Sbjct: 628 TEVFKTFSRAKSGVLLCTDVAARGLDMPKVDCVVQYTGPISTRDYVHRIGRTARAGCSGT 687
Query: 390 CFTLLHKDEVKRFKKLLQ 407
L EV+ F ++L+
Sbjct: 688 ATIFLTPSEVE-FVRMLE 704
>gi|403350666|gb|EJY74800.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 795
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 189/413 (45%), Gaps = 67/413 (16%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLR 58
GIS LFPVQ + + +DL + TGSGKTL +ALP V+ L R ++
Sbjct: 120 GISGLFPVQYSSFNHIWN----RKDLIVRDLTGSGKTLGFALPTVEYLRKNKLFGTRKIQ 175
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV-GQSSIADEISELIKRPKLEAGICYDP 117
A+V+ PTR+LALQV F A+ G L V G SI D+ +L K
Sbjct: 176 AMVLAPTRELALQVSKEFNALKHFEGEYNVLTVYGGVSIDDQTYQLRK------------ 223
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
VDI V T GR+MDH+ R F L L++DETD++L++ ++ + ++
Sbjct: 224 ---------GVDIFVGTTGRVMDHME-RRNFDFTDLKTLILDETDQMLKQGFKEDVERIM 273
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
Q ++K R G++ P VK V + D
Sbjct: 274 Q----------------------TIKAARPNGMQVLLFSATIPFWVKQVAKEQMAPD--- 308
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSS 296
+DL L T +T + + C + + L +L G + IVF S+
Sbjct: 309 FQMVDLAQNLKNKTSKT-------VNHLSINCPYQNRMSALADILICYGGLGQTIVFCST 361
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ L LL+ +++ I+ G Q+ R TLK F+E K VLV++D +RG+D+
Sbjct: 362 KAEANSL--LLSD--KIKQDIEVMHGDIAQNQREVTLKRFKENKFSVLVATDVASRGLDI 417
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
V+ V+ + P +++YIHRAGRTARAG+ G C T K + QKA
Sbjct: 418 PNVDLVIQVEPPNDVESYIHRAGRTARAGRTGTCITFYGKKHQYMINMIEQKA 470
>gi|148678591|gb|EDL10538.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Mus
musculus]
Length = 354
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 172/365 (47%), Gaps = 66/365 (18%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 50 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 106
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 107 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 147
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 148 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 203
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 204 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 227
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 228 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 286
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 287 RNLGFTAIPLH---GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 343
Query: 368 PAYIK 372
P + K
Sbjct: 344 PTHSK 348
>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
Length = 548
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 188/403 (46%), Gaps = 79/403 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RA-VRCLRA 59
G + P+Q I P L RD+ + TG+GKT S+ LP+V LS+ RA R R+
Sbjct: 21 GYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMVTMLSSGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F A L+ L +G G+ + +D
Sbjct: 77 LVLCPTRELAAQVAENFDTYAKYTRLTKALLIG-------------------GVSFGEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 118 KL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER F+ P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IERIFQLTPFTRQT-LFFSATMAPEIERI 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE--KC 290
LH P + TT ET + ++ + +K K L A+++S GE
Sbjct: 196 TNTFLHAPARIEVARQATTSETITQKLIQITPPRRDQSAKAKRELLRAIIKSEGEACTNA 255
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
I+F + + L G G QS+R+KTL AFR+G +Q+L++SD
Sbjct: 256 IIFCNRKTDVDIVAKSLKTHG---FNAAPIHGDLDQSLRTKTLDAFRDGSLQLLIASDVA 312
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
RG+D+ V++V NYD P++ + Y+HR GRT RAG+LG +++
Sbjct: 313 ARGLDIPAVSHVFNYDLPSHAEDYVHRIGRTGRAGRLGTAYSI 355
>gi|242014121|ref|XP_002427746.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212512187|gb|EEB15008.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 821
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 199/452 (44%), Gaps = 83/452 (18%)
Query: 9 VQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA-----LVV 62
QV QE P L + +D I S TGSGKTL++ALP++ L + R+ L+V
Sbjct: 277 TQVTTVQEKSIPVLLDGKDALIRSQTGSGKTLAFALPMLHKLQEIRPKITRSDGILSLIV 336
Query: 63 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 122
LPTR+LALQ +VF + + V +G KR +A
Sbjct: 337 LPTRELALQTYEVFNKLVKSYNWLVPGYLGGGE---------KRKSKKA----------- 376
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTR 181
L+ + IL+ TPGRL+DHI T+ LE + +LV+DE DRLL Y+ + T+L+ L R
Sbjct: 377 RLRKGITILIGTPGRLIDHIQHTKALNLEKVSWLVIDEADRLLDMGYEKDVSTLLETLDR 436
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
D D+S P LKT + K+ ++LSATL+ KLA L
Sbjct: 437 HD-----EDSSLLKPDY---LKTDEEKEEKEKEKEPKRHHRQTILLSATLSPKVQKLAGL 488
Query: 242 DLHHPLFLTTGETRYK--------------------LPERLESYKLICESKLKPLYLVAL 281
L P F+ + LPE L ++ KLK + L +
Sbjct: 489 SLRDPTFVDASDKNSSCSDHVPLVSSDMGAETDAMVLPESLIQKYIVTPPKLKLVSLTSF 548
Query: 282 L----QSLGEEKCIVFTSSVESTHRLCTLLN------------------------HFGEL 313
+ + ++K ++F + + LL+ +F
Sbjct: 549 IIWNSKVSQQKKMLIFVGTQDMVDYYTELLSTVFGGVTSKNDDDGNDTKSNEGLLNFPTS 608
Query: 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
I++ + G +QS R + K FR+ + VL+ +D RG+D+ V+ VV + P +
Sbjct: 609 DIELFKLHGNMKQSDRMEVFKTFRKSNMGVLLCTDVAARGLDLPEVDWVVQFTGPISVSD 668
Query: 374 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
Y+HR GRTAR+GQ G L +E+ +KL
Sbjct: 669 YVHRVGRTARSGQSGSSIIFLTPNEINFIRKL 700
>gi|45361669|ref|NP_989409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
tropicalis]
gi|40787696|gb|AAH64887.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
tropicalis]
Length = 479
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 183/399 (45%), Gaps = 71/399 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+GI PVQ + I P L RD + TGSGKT ++ LPI+Q LS L
Sbjct: 20 LGILKPSPVQ----ENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSEDPFGIF-CL 74
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 75 VLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH------------ 122
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+++ATPGRL DHI ++ F+++ + +LV+DE DRLL + +
Sbjct: 123 ---------VVIATPGRLADHIRSSNTFSIKKIRFLVLDEADRLLEQGCTDFT------- 166
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
D L + +T ++ SATLT +L
Sbjct: 167 --------QDLQVILEAVPAQRQT--------------------LLFSATLTDTLQELKT 198
Query: 241 LDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIVFTS 295
+ ++ P F +T E R E+L+ ++ K+K YLV L+Q +E ++FT+
Sbjct: 199 IAMNKPFFWESTSEVRT--VEQLDQRYILVPEKVKDAYLVHLIQKFQDEHEDWSIMIFTN 256
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ ++ L +L F + + + +Q R L F+ ++L+++D RG+D
Sbjct: 257 TCKTCQILNMMLREFSFPSVAL---HSMMKQKQRFAALAKFKSSVFKILIATDVAARGLD 313
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ V V+N++ P K YIHR GRTARAG+ G TL+
Sbjct: 314 IPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLV 352
>gi|29612573|gb|AAH49396.1| Ddx49-A-prov protein, partial [Xenopus laevis]
Length = 482
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 188/406 (46%), Gaps = 75/406 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 58
+GI PVQ + I P L RD + TGSGKT ++ LPI+Q LS + CL
Sbjct: 23 LGILKPSPVQ----ENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSEDPFGIFCL- 77
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
V+ PTR+LA Q+ + F + +GL + +G + + EL ++P
Sbjct: 78 --VLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPH---------- 125
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
I++ATPGRL DHI ++ F+++ + +LV+DE DRLL + +
Sbjct: 126 -----------IVIATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFT----- 169
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
D L + +T ++ SATLT +L
Sbjct: 170 ----------QDLQVILEAVPAQRQT--------------------LLFSATLTDTLQEL 199
Query: 239 AQLDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIVF 293
+ ++ P F +T E R E+L+ ++ K+K YLV L+Q +E ++F
Sbjct: 200 KTVAMNKPFFWESTSEVRT--VEQLDQRYILVPEKVKDAYLVYLIQKFQDEHEDWSIMIF 257
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
T++ ++ L +L F + + + +Q R L F+ ++L+++D RG
Sbjct: 258 TNTCKTCQILNMMLREFSFPSVAL---HSMMKQKQRFAALAKFKSSVFKILIATDVAARG 314
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+D+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 315 LDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDI 360
>gi|47937760|gb|AAH72323.1| Ddx49-A-prov protein, partial [Xenopus laevis]
Length = 429
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 186/404 (46%), Gaps = 71/404 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+GI PVQ + I P L RD + TGSGKT ++ LPI+Q LS L
Sbjct: 26 LGILKPSPVQ----ENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSEDPFGIF-CL 80
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ + F + +GL + +G + + EL ++P
Sbjct: 81 VLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPH------------ 128
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
I++ATPGRL DHI ++ F+++ + +LV+DE DRLL + +
Sbjct: 129 ---------IVIATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFT------- 172
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
D L + +T ++ SATLT +L
Sbjct: 173 --------QDLQVILEAVPAQRQT--------------------LLFSATLTDTLQELKT 204
Query: 241 LDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIVFTS 295
+ ++ P F +T E R E+L+ ++ K+K YLV L+Q +E ++FT+
Sbjct: 205 VAMNKPFFWESTSEVRT--VEQLDQRYILVPEKVKDAYLVYLIQKFQDEHEDWSIMIFTN 262
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ ++ L +L F + + + +Q R L F+ ++L+++D RG+D
Sbjct: 263 TCKTCQILNMMLREFSFPSVAL---HSMMKQKQRFAALAKFKSSVFKILIATDVAARGLD 319
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 320 IPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDI 363
>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362912|ref|ZP_12963530.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
subsp. salmonicida A449]
gi|356685918|gb|EHI50537.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 417
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 173/385 (44%), Gaps = 68/385 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTL----SNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80
RDL + TG+GKT ++ LP+++ L ++ R +RALV++PTR+LA+QV D
Sbjct: 42 RDLMAGAQTGTGKTAAFVLPLLEQLMQHPASDTARPIRALVLVPTRELAVQVFDSVVRYG 101
Query: 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 140
GL+ L G SIA ++ + LQ+ VD+L+ATPGRL+D
Sbjct: 102 QGTGLTSALVYGGVSIAAQV---------------------EALQAGVDLLIATPGRLLD 140
Query: 141 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 200
H+ +LEHL +LV DE DR+L + + +L+ +D + A T + F
Sbjct: 141 HLRQG-ALSLEHLSHLVFDEADRMLDMGFMDEIKALLKQIPADRQTLLFSA-TCDDNLFA 198
Query: 201 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 260
+ + R P L+++ P ++ ++ GE + L E
Sbjct: 199 LSRVLLRD-----------PELIEVA--------PRNTTAAEVEQRVYAVDGERKVALVE 239
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
L K G ++F+ + + +L G+ I +
Sbjct: 240 HLIKVK-------------------GWAPVLIFSRTRQGADKLA---QQLGKAGINALAF 277
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q R K L AFR G +Q LV++D RG+D+ +N V+N + P + Y+HR GR
Sbjct: 278 HGDLSQGAREKVLLAFRAGTLQALVATDVAARGLDILDLNYVINLEFPFVAEDYVHRIGR 337
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKL 405
T RAG G TL ++ +K+
Sbjct: 338 TGRAGNKGLAITLFSPEDAPLLEKV 362
>gi|395850554|ref|XP_003797848.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Otolemur
garnettii]
Length = 441
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 172/365 (47%), Gaps = 66/365 (18%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 43 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 99
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 100 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 140
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 141 --VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 196
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 197 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 220
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 221 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 279
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 280 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 336
Query: 368 PAYIK 372
P + K
Sbjct: 337 PTHSK 341
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 119/434 (27%), Positives = 211/434 (48%), Gaps = 77/434 (17%)
Query: 15 QETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-----LRALVVLPTRDL 68
Q+T+ P L +D+ + TGSGKT ++ LP+++ L R R LV+ PTR+L
Sbjct: 232 QKTVMPVALAGKDVVGQAVTGSGKTAAFILPVLERLMYRPKTSSKGGETRVLVLCPTREL 291
Query: 69 ALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
A Q +V +++ +G +S L VG S+ + +L +RP
Sbjct: 292 AQQCFEVGQSLSKFMGDISFCLCVGGLSLKLQEQQLKQRP-------------------- 331
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
D+++ATPGRL+DH+ + FTL+ L L++DE DR+L + ++ L +
Sbjct: 332 -DVVIATPGRLIDHVRNSPSFTLDALDILIMDEADRMLEDGFKDELDEI----------- 379
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP- 246
++ C P R M+ SAT+T ++L +L L+ P
Sbjct: 380 -----------------VKEC---------PKNRQT-MLFSATMTDKVDELVRLSLNKPV 412
Query: 247 -LFLTTGETRYK-LPERLESYKLICESKLKP--LYLVALLQSLGEEKCIVFTSSVESTHR 302
LF+ ++ K L + + ++ LK L++L + +++ I+F S HR
Sbjct: 413 RLFVDPKKSTAKGLTQEFVRIRSNSKNDLKERTATLLSLCRRTFKQRTIIFFRSKALAHR 472
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
+ + FG + + +E G Q R L+ F+ K L+++D +RG+D++GV V
Sbjct: 473 MRIM---FGLMELNAEELHGDLSQEQRLNALERFKNQKSDYLLATDLASRGLDIKGVETV 529
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA---DNDSCPIHSI 419
+N+D P I+ Y+HR GRTARAG GR +L+ + + K K +++++ DS +
Sbjct: 530 INFDLPNQIEIYLHRVGRTARAGTSGRSVSLIGETDRKMLKNIVKRSSAQSTDSIKHRIV 589
Query: 420 PSSLIESLRPVYKS 433
P+ ++ + + +S
Sbjct: 590 PTDVLSDVAELVES 603
>gi|357589331|ref|ZP_09127997.1| hypothetical protein CnurS_03986 [Corynebacterium nuruki S6-4]
Length = 449
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 189/409 (46%), Gaps = 71/409 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RC 56
GI F +Q + T+ L +DL + TG GKTL + +P++ + + A
Sbjct: 26 GIDRTFAIQ----ERTLPIALTGKDLIGQARTGMGKTLGFGVPLLDRVFDDADVTAPDGT 81
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
+RALVV+PTR+L +QV + + A + L+V G G+ +
Sbjct: 82 VRALVVVPTRELCIQVAEDLSDAAAHLPLTVTTIYG-------------------GVPF- 121
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
E + L DI+V TPGRL+D ++ + L H+ LV+DE D +L + + + +
Sbjct: 122 -EKQTEALAHGTDIVVGTPGRLLD-LSRQQLLDLSHVEILVLDEADEMLDQGFLDDVKAI 179
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
+ T + A+ +P +L RGF D P V++ T Q
Sbjct: 180 MAQTAPHRQTMLFSAT--MPGPIVALS--------RGFMDHP----VRIRADTTDAQ--- 222
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
P TT +T + +S+KL S L LLQ+ G + IVF
Sbjct: 223 ---------PTHATTTQTVF------QSHKLDRMS-----VLARLLQTPGRGRTIVF--- 259
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ + + N +L ++ G RQ R ++L AFREG + ++V++D RG+DV
Sbjct: 260 ARTKRQAAMVANDLADLGFRVGAVHGDMRQKDREQSLAAFREGTVDIMVATDVAARGIDV 319
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+ V +V+NY P KTY+HR GRT RAG G TL+ DEV R++ +
Sbjct: 320 DDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGVAVTLVGWDEVTRWQAI 368
>gi|123503211|ref|XP_001328468.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121911411|gb|EAY16245.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 473
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 198/409 (48%), Gaps = 54/409 (13%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
FPVQVAV ++ + DL I PTGSGKTL+Y +PI+ L R V+ LRA++V+P R
Sbjct: 29 FPVQVAVLEKFFASDV---DLAIGFPTGSGKTLAYLIPIISCLYKRIVQRLRAIIVVPNR 85
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA+QV +V A+ L+ + + + E S P
Sbjct: 86 ELAIQVYNVVCALIQNSKLTCAI-LSSNYWCGESSSYTNVP------------------- 125
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
DI + + L ++ L + Y+V+DE D +L + + WL V + SD
Sbjct: 126 --DIYICSSLSLSSYLLDVDDKLLSDIEYIVLDEGDVILEQPLENWLDHVQRSLNSDP-- 181
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
+P F TI V KD+ R+ K++ SATL+++ + + P
Sbjct: 182 --------IPEKF----TIPL--VTAPPKDR---RIRKILCSATLSRNSKQSEDFKMQFP 224
Query: 247 -LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
+ +++ ++RY +P L+ +I E + KP A+LQSL + V +T R
Sbjct: 225 EILISSDKSRYVIPNHLKEEFIIAERQNKP----AILQSLTTRFQFILCF-VSTTKRAVA 279
Query: 306 LLNHFGELRIK----IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
L N L K + E++ + +++ ++ + ++++ +D++ RG+++ ++
Sbjct: 280 LANIMRTLLAKTDFQVIEFAASLKSDKKNQAFESVDQNSSRLIICTDSLARGINLPYIDA 339
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 410
V+N+D PA +TYIHR GRTAR G G C T L E+ F+ ++ K D
Sbjct: 340 VINFDAPASARTYIHRIGRTARGGNSGTCVTFLLDSELILFRDIISKID 388
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 180/384 (46%), Gaps = 68/384 (17%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTL-SNRAV---RCLRALVVLPTRDLALQVKDVFAAIAP 81
DL + TG+GKT ++ALPI+Q L SNR + + +RAL++ PTR+LA Q+ + F +
Sbjct: 41 DLLGIAQTGTGKTAAFALPILQHLLSNRKMPSPKMVRALILSPTRELASQIAESFKTYSK 100
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
+GL + G G+ Y P+ + L +D+LV TPGRL+DH
Sbjct: 101 GMGLQIATIYG-------------------GVKYGPQ--YKALLGGLDVLVCTPGRLIDH 139
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
I + L + V+DE D++L + + V +N F A+ +P G
Sbjct: 140 IE-QKTVDLSQVECFVLDEADQMLDLGFVKPIRQVASRLPKKRQNLFFSAT--MPKEIG- 195
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 261
VL++ L DP ++ +T T ER
Sbjct: 196 ------------------------VLASELLTDPKRVE---------ITPEAT---TAER 219
Query: 262 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
+ L E++ K L + E+ +VFT + S R+ L G ++
Sbjct: 220 VSQQVLFIEAQRKRALLSEMYADAVLERTLVFTRTKRSADRVAAYLQAGG---VEAAAIH 276
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
G + QS R + L+AFR GK++ LV++D RG+DV+ V++V+NY+ P + Y+HR GRT
Sbjct: 277 GDKNQSQRERALQAFRAGKVRALVATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRT 336
Query: 382 ARAGQLGRCFTLLHKDEVKRFKKL 405
ARAG+ G TL DE + K +
Sbjct: 337 ARAGKSGVSITLCADDERRLLKDI 360
>gi|294777226|ref|ZP_06742682.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
gi|294448940|gb|EFG17484.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
Length = 439
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 189/402 (47%), Gaps = 79/402 (19%)
Query: 1 MGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
+ I L P+Q A W+E +DL + SPTGSGKTL+Y LP+VQ+L + +
Sbjct: 11 LKIERLNPMQEASINAWKEG-------KDLILLSPTGSGKTLAYLLPLVQSLK-PGITGV 62
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+A+V++P+R+LALQ+ VF ++ ++ +S RP +E
Sbjct: 63 QAIVLVPSRELALQIDQVFKSM--------------NTPFKAVSCYGGRPAMEE------ 102
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
++ +Q +V ++ TPGR+ DH+ + + F + + LV+DE D+ L +Q + TV+
Sbjct: 103 HRTIKGMQPSV--IIGTPGRMNDHL-SKQNFDADTVTTLVIDEFDKCLEFGFQEEMATVI 159
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
G L ++R + +LSAT ++ +
Sbjct: 160 ----------------------GQLPNLQR----------------RFLLSATDAEEIPQ 181
Query: 238 LAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
LD L FL E +L RL YK++ K K L LL +LG + +VF +
Sbjct: 182 FTGLDKTIKLNFLNPEE---QLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVFCNH 238
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
ES R+ L + + + G Q R ++L FR G VL+S+D RG+D+
Sbjct: 239 RESVERVGKYLQ---SQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDI 295
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
+ NVV+Y PA YIHR GRTAR G + +LH +E
Sbjct: 296 PEIENVVHYHLPANEDGYIHRNGRTARWEAEGNSYVILHAEE 337
>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
Length = 418
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 196/416 (47%), Gaps = 77/416 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVR 55
+G ++ P+Q Q+ I L RD+ + TG+GKT +Y LP++Q LS + A +
Sbjct: 21 LGFNTPTPIQ----QQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQMLSRQSREETAPK 76
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
RAL++ PTR+LA QV D A L++ G +SI + +L K
Sbjct: 77 HPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQLAK---------- 126
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
VDIL+ATPGRL+DH+ T+ +L L LV+DE DR+L + LP
Sbjct: 127 -----------GVDILIATPGRLLDHL-FTKKTSLNQLQMLVLDEADRMLDMGF---LPD 171
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ ++ + E R T L SA + +T + R K+ P V+ V +A T D
Sbjct: 172 IQRIMKRMPEER----QTLLFSA--TFETRVKALAYRLMKE---PVEVQ-VAAANSTADT 221
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
K + +P + K K L L+ S ++ +VFT
Sbjct: 222 VK----QMVYP----------------------VDKKRKSELLAYLIGSRNWQQVLVFTK 255
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ + + L + L G IK +G + Q R K L F+ GK++ L+++D RG+D
Sbjct: 256 TKQGSDALVSELKLDG---IKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGLD 312
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
+ + VVN+D P + Y+HR GRT RAGQ G + + +DE + LLQ +N
Sbjct: 313 IAQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAVSFMSRDE----EYLLQAIEN 364
>gi|358378227|gb|EHK15909.1| hypothetical protein TRIVIDRAFT_174620, partial [Trichoderma virens
Gv29-8]
Length = 652
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 145/294 (49%), Gaps = 83/294 (28%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG- 84
DL +++ TGSGKTL+YALPIV+ LSN V LRALVVLPTR+L Q ++VF A A
Sbjct: 130 DLLVSAATGSGKTLAYALPIVRDLSNSVVTRLRALVVLPTRELVKQAQEVFELCAKAYEG 189
Query: 85 -----LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ----------------- 122
+ VG+A+G S+A E L+ + YDPE Q
Sbjct: 190 EDRKRVRVGIAIGNQSLASEQDLLVSK-----ETRYDPEAYKQLEQEASNGASSSNNEDD 244
Query: 123 -------------------------ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 157
+ S VDIL+ TPGRL++H++ T GF+L ++ +LV
Sbjct: 245 LDDLLSGPNTRRANPRIGPWQGQVIDFYSKVDILICTPGRLVEHLDQTPGFSLSYIRWLV 304
Query: 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 217
VDE D+LL +++Q WL VL+ F S FG+ R F D
Sbjct: 305 VDEADKLLAQSFQGWLDVVLE--------------KFKTSEFGA----------RDFPDM 340
Query: 218 PYPRLVKMVLSATLTQDPNKLAQLDLHHP--LFLTTGE----TRYKLPERLESY 265
PY + K++LSATLT+D + L QL L P + L +G+ T + LPE L Y
Sbjct: 341 PYSGVRKILLSATLTRDLSLLNQLALRRPKLIVLESGKDVQVTEHSLPESLREY 394
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 327 SVRSKTLKAFR--EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
S+R KTL+AF ++++++SD + RG+D+ + +V+NYD P + +Y+HR GRTARA
Sbjct: 532 SIRRKTLRAFTTPSSPLRLIIASDLVARGIDIPKLPHVINYDLPPSVASYVHRVGRTARA 591
Query: 385 GQLGRCFTLLHKDEVKRF 402
G+ G +TL+ E F
Sbjct: 592 GRSGCAWTLVGDGESGWF 609
>gi|150005747|ref|YP_001300491.1| ATP-independent RNA helicase [Bacteroides vulgatus ATCC 8482]
gi|149934171|gb|ABR40869.1| ATP-independent RNA helicase [Bacteroides vulgatus ATCC 8482]
Length = 437
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 189/402 (47%), Gaps = 79/402 (19%)
Query: 1 MGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
+ I L P+Q A W+E +DL + SPTGSGKTL+Y LP+VQ+L + +
Sbjct: 9 LKIERLNPMQEASINAWKEG-------KDLILLSPTGSGKTLAYLLPLVQSLK-PGITGV 60
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+A+V++P+R+LALQ+ VF ++ ++ +S RP +E
Sbjct: 61 QAIVLVPSRELALQIDQVFKSM--------------NTPFKAVSCYGGRPAMEE------ 100
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
++ +Q +V ++ TPGR+ DH+ + + F + + LV+DE D+ L +Q + TV+
Sbjct: 101 HRTIKGMQPSV--IIGTPGRMNDHL-SKQNFDADTVTTLVIDEFDKCLEFGFQEEMATVI 157
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
G L ++R + +LSAT ++ +
Sbjct: 158 ----------------------GQLPNLQR----------------RFLLSATDAEEIPQ 179
Query: 238 LAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
LD L FL E +L RL YK++ K K L LL +LG + +VF +
Sbjct: 180 FTGLDKTIKLNFLNPEE---QLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVFCNH 236
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
ES R+ L + + + G Q R ++L FR G VL+S+D RG+D+
Sbjct: 237 RESVERVGKYLQ---SQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDI 293
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
+ NVV+Y PA YIHR GRTAR G + +LH +E
Sbjct: 294 PEIENVVHYHLPANEDGYIHRNGRTARWEAEGNSYVILHAEE 335
>gi|407645090|ref|YP_006808849.1| RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407307974|gb|AFU01875.1| RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 580
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 196/431 (45%), Gaps = 79/431 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--A 59
GI + FP+Q A T+ L +D+ PTGSGKTL++ LP++ L+ A + R
Sbjct: 32 GIEAPFPIQAA----TVPDALAGKDVLGRGPTGSGKTLAFGLPMLARLAGAASQPGRPRG 87
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV++PTR+LA Q++ A A A+GL V VG + I + L +
Sbjct: 88 LVLVPTRELAAQIERALDAPALALGLRVASVVGGAPIKRQADRLAR-------------- 133
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
VD+L+ATPGRL D + R +L + +DE D + A +LP V +L
Sbjct: 134 -------GVDLLIATPGRLADLV-MQRSASLADVRITALDEADHM---ADMGFLPQVTKL 182
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD---PN 236
+ D L SA T+ D +LVK L + +T P
Sbjct: 183 L----DQTPKDGQRLLFSA-----TL----------DGEVDKLVKRYLRSPVTHSTAPPA 223
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
HH LF+ R KL +R + ++ L I+F +
Sbjct: 224 ASVATMTHHLLFV-----RDKLAKRAVASEIAAREGL----------------TIMFVRT 262
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
RL L G I G + Q+ R++TL AF +G + VLV++D RG+ V
Sbjct: 263 KHGADRLAKQLRGVG---IPAGALHGGKAQNNRTRTLAAFADGSVPVLVTTDVAARGIHV 319
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+G++ VV+ D PA K Y+HRAGRTARAG+ G TL+ +E + + + +KA D I
Sbjct: 320 DGISLVVHVDPPAESKAYLHRAGRTARAGEDGVVVTLVMDEERRDVESMTRKAGVDIKGI 379
Query: 417 HSIPS--SLIE 425
P +LIE
Sbjct: 380 AVRPGDRTLIE 390
>gi|319640918|ref|ZP_07995627.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
gi|317387437|gb|EFV68307.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
Length = 439
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 189/402 (47%), Gaps = 79/402 (19%)
Query: 1 MGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
+ I L P+Q A W+E +DL + SPTGSGKTL+Y LP+VQ+L + +
Sbjct: 11 LKIERLNPMQEASINAWKEG-------KDLILLSPTGSGKTLAYLLPLVQSLK-PGITGV 62
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+A+V++P+R+LALQ+ VF ++ ++ +S RP +E
Sbjct: 63 QAIVLVPSRELALQIDQVFKSM--------------NTPFKAVSCYGGRPAMEE------ 102
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
++ +Q +V ++ TPGR+ DH+ + + F + + LV+DE D+ L +Q + TV+
Sbjct: 103 HRTIKGVQPSV--IIGTPGRMNDHL-SKQNFDADTVTTLVIDEFDKCLEFGFQEEMATVI 159
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
G L ++R + +LSAT ++ +
Sbjct: 160 ----------------------GQLPNLQR----------------RFLLSATDAEEIPQ 181
Query: 238 LAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
LD L FL E +L RL YK++ K K L LL +LG + +VF +
Sbjct: 182 FTGLDKTIKLNFLNPEE---QLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVFCNH 238
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
ES R+ L + + + G Q R ++L FR G VL+S+D RG+D+
Sbjct: 239 RESVERVGKYLQ---SQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDI 295
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
+ NVV+Y PA YIHR GRTAR G + +LH +E
Sbjct: 296 PEIENVVHYHLPANEDGYIHRNGRTARWEAEGNSYVILHAEE 337
>gi|345519434|ref|ZP_08798857.1| ATP-independent RNA helicase [Bacteroides sp. 4_3_47FAA]
gi|345457170|gb|EET15176.2| ATP-independent RNA helicase [Bacteroides sp. 4_3_47FAA]
Length = 437
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 189/402 (47%), Gaps = 79/402 (19%)
Query: 1 MGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 57
+ I L P+Q A W+E +DL + SPTGSGKTL+Y LP+VQ+L + +
Sbjct: 9 LKIERLNPMQEASINAWKEG-------KDLILLSPTGSGKTLAYLLPLVQSLK-PGITGV 60
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+A+V++P+R+LALQ+ VF ++ ++ +S RP +E
Sbjct: 61 QAIVLVPSRELALQIDQVFKSM--------------NTPFKAVSCYGGRPAMEE------ 100
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
++ +Q +V ++ TPGR+ DH+ + + F + + LV+DE D+ L +Q + TV+
Sbjct: 101 HRTIKGVQPSV--IIGTPGRMNDHL-SKQNFDADTVTTLVIDEFDKCLEFGFQEEMATVI 157
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
G L ++R + +LSAT ++ +
Sbjct: 158 ----------------------GQLPNLQR----------------RFLLSATDAEEIPQ 179
Query: 238 LAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
LD L FL E +L RL YK++ K K L LL +LG + +VF +
Sbjct: 180 FTGLDKTIKLNFLNPEE---QLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVFCNH 236
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
ES R+ L + + + G Q R ++L FR G VL+S+D RG+D+
Sbjct: 237 RESVERVGKYLQ---SQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDI 293
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
+ NVV+Y PA YIHR GRTAR G + +LH +E
Sbjct: 294 PEIENVVHYHLPANEDGYIHRNGRTARWEAEGNSYVILHAEE 335
>gi|323454376|gb|EGB10246.1| hypothetical protein AURANDRAFT_23571, partial [Aureococcus
anophagefferens]
Length = 545
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 187/427 (43%), Gaps = 76/427 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC--------LR 58
F A+ + + L RD+C ++ TGSGKT ++ LP+++ R VR +R
Sbjct: 71 FSRPTAIQERVVPLALAGRDVCASAATGSGKTAAFGLPLLE----RVVRAKAAHGKPTIR 126
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
+++LPTR+LA Q +++ + G V L VG + ++ EL R K
Sbjct: 127 GVILLPTRELAAQCEEMVRGLGQFSGADVALVVGGAKDV-KVQELALRRK---------- 175
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
D++VATPGRL+DH+ RG L+ + V+DE DRLL ++ L +L
Sbjct: 176 ---------PDVVVATPGRLLDHLTNGRGVHLDDVECCVLDEADRLLELGFEDELRQLL- 225
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LP G ERG + M+ SAT L
Sbjct: 226 --------------GALPG-----------GSERGKGGRGSGTRQTMLFSATFGAKVESL 260
Query: 239 AQLDLHHPLFL------TTGETRYKLPE---RLESYKLICESKLKPLYLVALLQSLGE-- 287
A L L P+ + G KL + RL++ + E + L+ALL +
Sbjct: 261 AALSLVRPVRVRVASGHGAGGVAAKLTQDFVRLKAAEGRAEDAEREATLLALLTRTVDPA 320
Query: 288 EKCIVFTSSVESTHRLCTLLNHF-------GELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+ +VF + +T R+ LL G E G RQ+ R L F G
Sbjct: 321 SQAVVFFDTKAATRRVGALLEALRARGGLSGHALPPATELHGGLRQAQRDANLARFERGD 380
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+L+ +D RG+D+ GV VVN++ P + TY+HR GRTARAG+ G TL+ +
Sbjct: 381 AGILLCTDVAARGLDLAGVGAVVNFEMPRTVATYVHRVGRTARAGRSGHAVTLVGPQRRQ 440
Query: 401 RFKKLLQ 407
K+ L+
Sbjct: 441 ALKEFLR 447
>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase [Methylobacterium sp. 4-46]
gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
Length = 499
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 129/434 (29%), Positives = 196/434 (45%), Gaps = 77/434 (17%)
Query: 2 GISSLFPVQV-AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------ 54
G + P+Q AV Q G RDLC + TG+GKT ++ALPI+ L++
Sbjct: 21 GYVTPTPIQAQAVPQAMAG-----RDLCGIAQTGTGKTAAFALPILHRLASETPQRRAPR 75
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R R LV+ PTR+LA Q+ + F + S + G +I +
Sbjct: 76 RGCRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQ--------------- 120
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+ L + VDILVATPGRL+D I+ R +L+ + YLV+DE D++L + L
Sbjct: 121 ------ERALANGVDILVATPGRLLDLID-RRSLSLDAVEYLVLDEADQMLDLGFIHALK 173
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
++ T LP A SL F PR + L+A +D
Sbjct: 174 RIV---------------TLLPKARQSL-----------FFSATMPRNI-ATLAAQYLRD 206
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
P ++A P+ T ER+E + + K L +L+ ++ +VFT
Sbjct: 207 PVQVAVT----PVATTA--------ERVEQRVVHVPTGAKQALLATILRDASIDRVLVFT 254
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ R+ L G I G + Q R + L AFR G +VLV++D RG+
Sbjct: 255 RTKHGADRVVRGLEKAG---IGSAAIHGNKSQPQRERALAAFRAGICRVLVATDIAARGI 311
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
DVEGV++VVN+D P + Y+HR GRTARAG G + + DE + + + +++
Sbjct: 312 DVEGVSHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCN-DEERAYLRDIERLTRQKV 370
Query: 415 PIHSIPSSLIESLR 428
P +IP + R
Sbjct: 371 PEMAIPEGFVPPSR 384
>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase [Methylobacterium nodulans ORS 2060]
gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
ORS 2060]
Length = 506
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 192/422 (45%), Gaps = 71/422 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVVLPTR 66
+ + + P + RDLC + TG+GKT ++ALPI+ L++ R R LV+ PTR
Sbjct: 28 IQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPILHRLASETPAKRAPRRGCRVLVLSPTR 87
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ D F + S + G +I + + L +
Sbjct: 88 ELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQ---------------------ERALAN 126
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
+D+LVATPGRL+D ++ R +L+ + YLV+DE D++L + L ++
Sbjct: 127 GIDVLVATPGRLLDLVD-RRSLSLDSVEYLVLDEADQMLDLGFIHALKRIV--------- 176
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
T LP A SL F P+ + L+A +DP ++A P
Sbjct: 177 ------TLLPKARQSL-----------FFSATMPKNI-ATLAAQYLRDPVQVAVT----P 214
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ T ER+E + + K L +L+ ++ +VFT + R+
Sbjct: 215 VATTA--------ERVEQRVIHVSTGAKQALLGTILRDESIDRVLVFTRTKHGADRVVRG 266
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G I G + Q R + L AFR G +VLV++D RG+DVEGV +VVN+D
Sbjct: 267 LEKVG---IGSAAIHGNKSQPQRERALAAFRAGTCRVLVATDIAARGIDVEGVTHVVNFD 323
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 426
P + Y+HR GRTARAG G + +++E + + + +++ P +IP +
Sbjct: 324 LPNVPEAYVHRIGRTARAGADGLAISFCNEEE-RAYLRDIERLTRQKVPEMAIPVGFVPP 382
Query: 427 LR 428
R
Sbjct: 383 SR 384
>gi|440798652|gb|ELR19719.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 906
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 196/423 (46%), Gaps = 57/423 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G P+Q+ ++I GL RDL + TGSGKT ++ LP++ +S A
Sbjct: 494 GYKQPMPIQM----QSIPIGLQGRDLIGLAETGSGKTCAFVLPMLVYISKLPPMTAENAA 549
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
AL++ PTR+LALQ++ A A A+G VG SI E G
Sbjct: 550 DGPYALIMAPTRELALQIEQEAAKFASAMGFRTVAVVGGQSIE------------EQGFS 597
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ +IL+ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 598 ---------LRRGAEILIATPGRLVDCLE-QRYVVLNQCNYVVLDEADRMVDMGFEVQVT 647
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
T+L S N S+ T +L+ + V R ++ SAT+
Sbjct: 648 TILDAMPSSNLK--SEDETTAEEQMAALQEEKPDHVYR----------TTVMFSATMPVA 695
Query: 235 PNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 291
+LA+ L HP + GE K+ +R+E K + K K L+ LL S +
Sbjct: 696 VERLARKYLRHPAVIQIGEVGKAGEKIEQRVEFVKGDNDKKNK---LLNLLYSGIAPPIM 752
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
VF + ++ L +N G + +SG + Q +R + + F+ G I +LVS+D
Sbjct: 753 VFVNQKKNCDILSRAINKAGFRSATL--HSG-KSQELREEAMDGFKAGTIDILVSTDVAG 809
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF---KKLLQK 408
RG+DV+GV +V+NYD I Y HR GRT RAG G + + D+ F K++LQ
Sbjct: 810 RGIDVKGVTHVINYDMAKSIADYTHRIGRTGRAGMKGVAVSFITNDDADLFYDLKQMLQA 869
Query: 409 ADN 411
+ N
Sbjct: 870 SGN 872
>gi|336249396|ref|YP_004593106.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
gi|334735452|gb|AEG97827.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
Length = 446
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 190/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L+ + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLTQDQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA QV G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQV---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VDILVATPGRL+D H NA +L+ + LV+DE DR+L
Sbjct: 126 VDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR K PR ++ SAT + + LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLA------KLPPRRQNLLFSATFSDEIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L L+ ++ +VFT + + L
Sbjct: 205 PLEVEVAR-RNTASEQITQHVHFVDKKRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKK 366
>gi|444352450|ref|YP_007388594.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
gi|443903280|emb|CCG31054.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
Length = 446
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 190/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L+ + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLTQEQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA QV G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQV---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VDILVATPGRL+D H NA +L+ + LV+DE DR+L
Sbjct: 126 VDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR K PR ++ SAT + + LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLA------KLPPRRQNLLFSATFSDEIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L L+ ++ +VFT + + L
Sbjct: 205 PLEVEVAR-RNTASEQITQHVHFVDKKRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKK 366
>gi|373853830|ref|ZP_09596629.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
gi|372473357|gb|EHP33368.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
Length = 539
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 189/401 (47%), Gaps = 72/401 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MG + P+Q P + E RD+ ++ TG+GKT ++ALP++ L LR
Sbjct: 152 MGYTDPTPIQAQAV-----PLVLEGRDVTGSAQTGTGKTAAFALPVLHRLGAHG--RLRC 204
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LALQV++ F + L+ + G G+ Y +
Sbjct: 205 LVLEPTRELALQVEEAFQKYSKYTDLTTTIVYG-------------------GVGYGKQ- 244
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++LQ VD+L ATPGRL+DH+ TL+ + L++DE DR+L +LP V ++
Sbjct: 245 -REDLQRGVDVLAATPGRLLDHLEQGT-LTLDSIEILILDEVDRMLD---MGFLPDVKRI 299
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+++C ER + SATL + +L+
Sbjct: 300 -------------------------VQQCPRER----------QTLFFSATLPPELAQLS 324
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L P+ + G+ R ++ + S+ L L+ LL+ + I+FT +
Sbjct: 325 SWALRDPVQIKIGQRRSPAETVSHAFYPVVASQKFDL-LIELLKRTEFKSIIIFTRTKMG 383
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
R+ L + + + QR+ V + L+ F+ GK +VLV++D RG+D+ GV
Sbjct: 384 ADRIAHRLQR-EQHTVGVIHSDRSQRERV--EALEGFKSGKFEVLVATDIAARGLDIAGV 440
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
++V+NYD P + Y+HR GRT RA G FTL+ +D+V+
Sbjct: 441 SHVINYDVPENAEDYVHRIGRTGRANATGDAFTLVTEDDVR 481
>gi|391229094|ref|ZP_10265300.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
gi|391218755|gb|EIP97175.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
Length = 539
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 189/401 (47%), Gaps = 72/401 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MG + P+Q P + E RD+ ++ TG+GKT ++ALP++ L LR
Sbjct: 152 MGYTEPTPIQAQAV-----PLVLEGRDVTGSAQTGTGKTAAFALPVLHRLGAHG--RLRC 204
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LALQV++ F + L+ + G G+ Y +
Sbjct: 205 LVLEPTRELALQVEEAFQKYSKYTDLTTTIVYG-------------------GVGYGKQ- 244
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++LQ VD+L ATPGRL+DH+ TL+ + L++DE DR+L +LP V ++
Sbjct: 245 -REDLQRGVDVLAATPGRLLDHLEQGT-LTLDSIEILILDEVDRMLD---MGFLPDVKRI 299
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+++C ER + SATL + +L+
Sbjct: 300 -------------------------VQQCPRER----------QTLFFSATLPPELAQLS 324
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L P+ + G+ R ++ + S+ L L+ LL+ + I+FT +
Sbjct: 325 SWALRDPVQIKIGQRRSPAETVSHAFYPVVASQKFDL-LIELLKRTEFKSIIIFTRTKMG 383
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
R+ L + + + QR+ V + L+ F+ GK +VLV++D RG+D+ GV
Sbjct: 384 ADRIAHRLQR-EQHTVGVIHSDRSQRERV--EALEGFKSGKFEVLVATDIAARGLDIAGV 440
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
++V+NYD P + Y+HR GRT RA G FTL+ +D+V+
Sbjct: 441 SHVINYDVPENAEDYVHRIGRTGRANATGDAFTLVTEDDVR 481
>gi|406603762|emb|CCH44787.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 435
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 184/390 (47%), Gaps = 68/390 (17%)
Query: 28 CIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 86
CI + TGSGKT+++ P++ S + LV+ PTR+LALQ+ + FAA+ A+ +
Sbjct: 35 CIGGAKTGSGKTIAFGAPMLTKWSEDPMGIF-GLVLTPTRELALQIAEQFAALGAAMNIR 93
Query: 87 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
+ + VG S+ ++ +L +P ++ATPGRL DHI +
Sbjct: 94 IAVIVGGESMVEQAIKLQGKPHF---------------------VIATPGRLADHILNSG 132
Query: 147 GFTLEHLC---YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS-- 201
T+E L YLV+DE DRLL ++ SD + FS LPSA
Sbjct: 133 EDTIEGLKRVRYLVLDEADRLLSNSFG-----------SDLQRCFS----ILPSADKRQT 177
Query: 202 -LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 260
L T R KD+P P T P +L +H + +P
Sbjct: 178 LLFTATVTDAVRALKDRPTP-----------TNKP----KLFIHE----VDSVDKVAIPS 218
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEK--CIVFTSSVESTHRLCTLLNHFGELRIKIK 318
+LE+Y ++ S +K YL ++L EK +VF V TH + L I++
Sbjct: 219 QLETYFMLVPSYVKESYLYSILSHEDNEKKTAMVF---VNRTHTAEVVRRTLRNLEIRVA 275
Query: 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 378
Q R+ +L FR +VL+++D +RG+D+ V V+NYD PA ++HR
Sbjct: 276 SLHSELPQQERTNSLHRFRANAARVLIATDVASRGLDIPDVELVINYDIPADPDDFVHRV 335
Query: 379 GRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
GRTARAG+ G+ +L+ + +V R + + ++
Sbjct: 336 GRTARAGRKGQTISLVSEKDVSRIQAIEER 365
>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 466
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 175/378 (46%), Gaps = 70/378 (18%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTL--SNRAV--RCLRALVVLPTRDLALQVKDVFAAIAP 81
DL + TG+GKT ++ LP+V L N+ R RAL++ PTR+LA Q+++ A
Sbjct: 58 DLIGLAQTGTGKTAAFVLPLVHQLLAENKQAPGRSCRALILAPTRELAAQIEEQVKAYTA 117
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
L+ + G G+ P+ ++ L VDILVATPGRL+DH
Sbjct: 118 HTKLTSTVVFG-------------------GVKAGPQ--IKALARGVDILVATPGRLLDH 156
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
+ R L+ ++++DE D++L + +P + +L R E R +
Sbjct: 157 LG-ERKARLDLTRFVILDEADQMLDLGF---IPAIRKLLRMVGEERQT------------ 200
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-E 260
++ SAT+ +LA L HP T T P E
Sbjct: 201 -----------------------LMFSATMAPAIRQLADDFLDHPE--TVAVTPPSKPVE 235
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
R++ E+ KP L+ L+ ++ I+FT + R+ L +G K
Sbjct: 236 RIDQKVFYTEASAKPDALIDLMAPEAGKRAIIFTRTKYGADRVAKRLVKYGH---KANAI 292
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G + Q+ R++ L AF+ G+ VLV++D RG+DV+GV+ VVNY+ P + Y+HR GR
Sbjct: 293 HGDKSQNQRTRALDAFKSGEAPVLVATDIAARGIDVDGVDLVVNYELPNVAENYVHRIGR 352
Query: 381 TARAGQLGRCFTLLHKDE 398
TARAG GR L DE
Sbjct: 353 TARAGASGRAVALCAPDE 370
>gi|321460070|gb|EFX71116.1| hypothetical protein DAPPUDRAFT_309224 [Daphnia pulex]
Length = 757
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 183/406 (45%), Gaps = 68/406 (16%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC--LRALVVLPTRDLALQVKDVFAAI 79
L ++D + S TGSGKTL+YA+PIV++++ + R + ALV++PTR+L LQ F I
Sbjct: 222 LDKKDALVKSQTGSGKTLAYAIPIVESITPKIDRTSGVFALVIVPTRELVLQTYTWFTKI 281
Query: 80 APAVGLSV-GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
A V G +G E + + K ++IL++TPGRL
Sbjct: 282 LKAFTWVVPGYLIGGEKKKSEKARIRK---------------------GMNILISTPGRL 320
Query: 139 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
+DH+++TR L L +LV+DE DRLL Y+ + +L + +
Sbjct: 321 LDHLSSTRNLNLGRLHWLVMDEADRLLDMGYEKDVARILSIVQ----------------- 363
Query: 199 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK- 257
E K+ R +++SATL++ KLA L L P ++ E +
Sbjct: 364 ------------EHFVKEGCIGRRQNVMVSATLSKGVEKLAGLTLTDPEYIKLSEDDSEN 411
Query: 258 -----LPERLESYKLICESKLKPLYLVALL----QSLGEEKCIVFTSSVESTHRLCTLLN 308
P L+ + +I KL+ L A + E+K ++F ++ +S L N
Sbjct: 412 QDQLVTPTNLKQWYIIVPPKLRLATLAAFILWKCTISTEKKVLIFMTTQDSVDYHAELFN 471
Query: 309 HF---GELRIKIKEYS--GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
E R I Y G Q R+ K FR+ VL+ +D RG+D+ ++ +V
Sbjct: 472 RVLAKREDRTSISFYKLHGSMPQKDRTAIFKEFRDTDSGVLLCTDVAARGLDLSAIDWIV 531
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
Y+ P + Y+HR GRTAR G+ G+ L E +L +
Sbjct: 532 QYNPPVTAEEYVHRVGRTARVGKCGQAIIFLAPPETDFVHRLANRG 577
>gi|386720987|ref|YP_006187312.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|384088111|gb|AFH59547.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 425
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 182/382 (47%), Gaps = 67/382 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVLPTRDLALQ 71
+ +E I L D+ + TG+GKTL++ LPI++++ NR+ ++AL+V PTR+LA+Q
Sbjct: 30 IQREAIPSVLGGHDVIAQAQTGTGKTLAFVLPILESIDPNRS--HVQALIVTPTRELAIQ 87
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
+ + A AP G+ V A G D E +++L+ A+ I+
Sbjct: 88 ITEEVARWAPLKGIRVLSAYG---------------------GQDVERQIRKLEGAIHII 126
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL+DH+ L L LV+DE D++L + +LP V+++ + R +
Sbjct: 127 VATPGRLLDHLR-RETVQLFKLSTLVLDEADQML---HMGFLPEVVEIISATPTRRQT-- 180
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
++ SAT+ + +LA+ + P+ +
Sbjct: 181 ---------------------------------LLFSATMPERVRQLAKEYMKPPVEIEV 207
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R L E +E + + K L AL +++ E+ + + R L +
Sbjct: 208 KAKRVTLDE-IEQIVVQTSDRGK---LDALCKAMEEDPPFLGMIFCRTKLRATKLRDELD 263
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
E + E G Q+ R + +K FR+ KIQ LV++D RG+DVEG+ +V NYD P
Sbjct: 264 ERGYAVDELHGDLTQAKREQVMKRFRDAKIQFLVATDIAARGLDVEGITHVYNYDIPHDA 323
Query: 372 KTYIHRAGRTARAGQLGRCFTL 393
++YIHR GRT RAGQ G+ T
Sbjct: 324 ESYIHRIGRTGRAGQTGKAITF 345
>gi|380486755|emb|CCF38497.1| DEAD/DEAH box helicase, partial [Colletotrichum higginsianum]
Length = 621
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 158/307 (51%), Gaps = 78/307 (25%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG- 84
DL + + TGSGKTL+YALPIV+ LS AV LRALVVLPTR+L Q ++VF A A
Sbjct: 327 DLLVAAATGSGKTLAYALPIVRDLSQSAVTRLRALVVLPTRELVKQAQEVFELCAGAFDG 386
Query: 85 -----LSVGLAVGQSSIADEISELIKRPKLEAGICYDPE----------DVLQELQ---- 125
+ VG++VG + E + L++R + YDPE D +E++
Sbjct: 387 RDQKRVRVGVSVGSQQLRHEQAALVERNER-----YDPEAYRAAHQRELDAWKEVEESTA 441
Query: 126 --------------------SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
S VD+L+ TPGRL++HIN T GF+L+++ +LVVDE D+LL
Sbjct: 442 DADDDAAVASSLPDHVVNYASRVDVLICTPGRLVEHINLTPGFSLDYVRWLVVDEADKLL 501
Query: 166 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 225
+++Q WL V+ R+D ++FS R F D + K+
Sbjct: 502 AQSFQGWLDVVMPKLRTD--DKFS---------------------ARDFPDSNLSGVRKV 538
Query: 226 VLSATLTQDPNKLAQLDLHHP-LFLTTGE--------TRYKLPERL-ESYKLICESKLKP 275
VLSATLT+D + L+ L L P L + G+ + LP L ES + ++ LKP
Sbjct: 539 VLSATLTRDLSLLSGLQLRRPQLIVLEGDQADGTAPIAEHTLPTLLKESAIRVHDANLKP 598
Query: 276 LYLVALL 282
LYL+ LL
Sbjct: 599 LYLIDLL 605
>gi|16126090|ref|NP_420654.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 517
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 188/415 (45%), Gaps = 81/415 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRA-VRCLRA 59
G ++ P+Q + I L +D+ + TG+GKT ++ LP++ L S RA R RA
Sbjct: 21 GYTTATPIQA----QAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDRLQSGRAKARMPRA 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV F A LS L +G S D+
Sbjct: 77 LVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQ-------------------- 116
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L VD+L+ATPGRL+DH RG + + +LVVDE DR+L
Sbjct: 117 -EKKLDRGVDVLIATPGRLLDHFE--RGKLLMTGVQFLVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER FK P P+ + SAT+ + +L
Sbjct: 164 ---------------FIPD------------IERIFKMTP-PKKQTLFFSATMPPEITRL 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
+ L P+ + TT +L ++ S + K K L L AL++ G E IV
Sbjct: 196 TKQFLRDPVRIEVARPATTNANITQLLVKVPS----SDPKAKRLALRALIEKAGIETGIV 251
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F + + L G I G Q+ R KTL FR G +++LV+SD R
Sbjct: 252 FCNRKTEVDIVAKSLKVHGYDAAPIH---GDLDQTQRMKTLADFRSGALKILVASDVAAR 308
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
G+D+ V++V NYD P + Y+HR GRT RAG+ G + L+ + K F K+++
Sbjct: 309 GLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKGFDKVIK 363
>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
Length = 836
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 132/413 (31%), Positives = 202/413 (48%), Gaps = 69/413 (16%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA- 59
+G + P+Q A I L RD+C ++ TGSGKT ++ALP ++ L +R R L A
Sbjct: 192 LGYKTPTPIQAAC----IPLALAGRDICGSAVTGSGKTAAFALPFLERLLHRP-RGLAAT 246
Query: 60 --LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
LV+ PTR+LA+Q+ + +A ++V L VG S++ + + L K P
Sbjct: 247 YVLVLTPTRELAVQIHSMIEKLAQFTDVTVALIVGGLSLSVQAATLRKLP---------- 296
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+++VATPGRL+DH+ ++ LE L LV+DE DRLL ++ V+
Sbjct: 297 -----------EVVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFR---DEVM 342
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
++ R + R T L SA F D+ V+ ++S +L Q
Sbjct: 343 EVVRCAPKKR----QTMLFSAT--------------FSDQ-----VRDLVSLSLKQPVRL 379
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL-QSLGEEKCIVFTSS 296
A P LT R K P + + +C VAL +S + IVF S+
Sbjct: 380 AADAARAAPKLLTQEIVRLKGPAAAATKEAVC---------VALCSRSFSSGRTIVFCST 430
Query: 297 VESTHRLCTLLNHFGELRI-KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ HRL L FG ++ E G Q+ R ++L++FR G L+++D RG+D
Sbjct: 431 KQRAHRLKIL---FGLAKLPPAAELHGNMSQTARLESLESFRRGDTAYLLATDVAARGLD 487
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
++GV VVNYD P ++TY+HR GRTARAG G TL+ + K+L ++
Sbjct: 488 IQGVEVVVNYDAPRKLETYLHRIGRTARAGAAGVAVTLVEDGDRPLLKELTRR 540
>gi|127511701|ref|YP_001092898.1| ATP-dependent RNA helicase SrmB [Shewanella loihica PV-4]
gi|126636996|gb|ABO22639.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 419
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 114/429 (26%), Positives = 195/429 (45%), Gaps = 75/429 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
+ Q+TI L +D+ +PTG+GKT S+ LP +Q L + R R L++ PTR+LA
Sbjct: 40 IQQQTIPLALEHKDILARAPTGTGKTASFLLPALQHLLDFPRRYSGQARVLILAPTRELA 99
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 129
QV + +A +GL + + G G+ Y P++ Q L+ +D
Sbjct: 100 SQVHRYASHLATGLGLDIAIITG-------------------GVPYAPQE--QALKENID 138
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
ILVATPGRLM++++ F + + LV+DE DR+L + + + ++ + N
Sbjct: 139 ILVATPGRLMEYLDKEL-FDAQSVEILVLDEADRMLDMGFSSAVQSIAIEAQQRKHNMLF 197
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS--ATLTQDPNKLAQLDLHHPL 247
A T+ GV R +M+L+ T+ P + + +H +
Sbjct: 198 SA------------TLEGGGVSR---------FAEMLLTNPVTIETKPPRSEKAKIHQWM 236
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
L ++ + L+C+ +L+ + IVF + E L L
Sbjct: 237 HLAD--------DKEHKFALLCD----------ILKREEVSRAIVFVKTREVVASLEGQL 278
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
G I G Q R + L F +G++ VL+++D RG+D++G+ +V+N+D
Sbjct: 279 QQAG---IHCAFMRGDMEQKARFQALGRFTKGEVNVLLATDVAARGIDIDGITHVINFDM 335
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
P TY+HR GRT RAG G +L+ +++ K+ + + + +I+SL
Sbjct: 336 PRSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVAKIERYIEQ------PLKRRVIDSL 389
Query: 428 RPVYKSGDV 436
RP +K V
Sbjct: 390 RPKHKEAKV 398
>gi|420099387|ref|ZP_14610620.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9455]
gi|394423123|gb|EJE96397.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9455]
Length = 376
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 190/412 (46%), Gaps = 76/412 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKR-QNLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQKADNDSC 414
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K D C
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKRDPAHC 372
>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
Length = 454
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR K P+ ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLA------KLPPKRQNLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|339998715|ref|YP_004729598.1| ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC 12419]
gi|339512076|emb|CCC29797.1| putative ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC
12419]
Length = 451
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 190/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT ++LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFSLPLLQHLITQQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G + S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENIRDYSQYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR K P+ ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLA------KLPPKRQNLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|334703122|ref|ZP_08518988.1| putative ATP-dependent RNA helicase RhlE [Aeromonas caviae Ae398]
Length = 417
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 185/409 (45%), Gaps = 72/409 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL----SNRAVRC 56
+G ++ PVQ + I L RDL + TG+GKT ++ LP+++ L ++ A R
Sbjct: 22 LGYAAPTPVQASA----IPLILAGRDLMAGAQTGTGKTAAFVLPLLEQLLQHPTSDAPRP 77
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
+RALV++PTR+LA+QV + A L+ L G SIA ++
Sbjct: 78 IRALVLVPTRELAVQVAESVTRYARGTTLTSTLVYGGVSIAAQV---------------- 121
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
+ L + VDIL+ATPGRL+DH+ G TL L +LV DE DR+L + + +
Sbjct: 122 -----EALNAGVDILIATPGRLLDHLRQG-GLTLAELRHLVFDEADRMLDMGFMDEIKAL 175
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
L+ +D + T L SA C V +D P LV++ P
Sbjct: 176 LKQIPADRQ-------TLLFSATCDDNLFALCKVL--LRD---PALVEVA--------PR 215
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
++ ++ GE + L E + + K G ++F+ +
Sbjct: 216 NTTAAEVEQRVYAVDGERKLALVEHMLTVK-------------------GWAPALIFSRT 256
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ +L L G I + G QS R L AFR G +Q LV++D RG+D+
Sbjct: 257 RQGADKLAQQLGKGG---INALAFHGDLSQSARENVLLAFRAGTLQALVATDVAARGLDI 313
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+N+V+N + P + Y+HR GRT RAG G TL ++ +K+
Sbjct: 314 TDLNHVINLEFPHQPEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKV 362
>gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
Length = 451
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
V Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 VQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D +LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKRLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|389594423|ref|XP_003722434.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania major
strain Friedlin]
gi|323363662|emb|CBZ12667.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania major
strain Friedlin]
Length = 405
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 183/406 (45%), Gaps = 69/406 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V +E I L +D+ + G+GKT S+ +P+++ + R + ++AL+++PTR+LALQ
Sbjct: 56 VQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLEKVDTREL-YVQALLMVPTRELALQT 114
Query: 73 KDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
V + + GL V + G +++ D+I L S V IL
Sbjct: 115 AQVTKELGKHIPGLEVMVTTGGTTLRDDILRLT---------------------SKVHIL 153
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGR++D + + + L H LV+DE D+LL + + + D
Sbjct: 154 VATPGRVLD-LASKKAVDLSHCHILVLDEADKLLSQEFMEII---------------DDL 197
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT- 250
T+LPS S M+ SAT A+ LH+P +
Sbjct: 198 YTYLPSQLQS-----------------------MLFSATFPVTVKTFAERHLHNPYEINL 234
Query: 251 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 310
E K + Y E + K L L L + I+F +SV L +
Sbjct: 235 MDELTLK---GVTQYYAFVEERQKIHCLNTLFNKLQINQSIIFCNSVNRVELLAKKITQL 291
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
G I ++ +Q+Q R++ FREG + LV SD +TRG+D++ VN V+N+D P Y
Sbjct: 292 GYSCYYI--HARMQQQH-RNRVFHDFREGHCRNLVCSDLITRGIDIQAVNVVINFDFPKY 348
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+TY+HR GR+ R G LG + D+ ++ Q+ D + PI
Sbjct: 349 AETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIEQELDTEIKPI 394
>gi|115400041|ref|XP_001215609.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
gi|114191275|gb|EAU32975.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
Length = 360
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 157/342 (45%), Gaps = 64/342 (18%)
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
+L++ PTR+LA Q+ A+ + + L +G + + L K+P
Sbjct: 14 SLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPH---------- 63
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L+
Sbjct: 64 -----------VIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLR 112
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
L LP K K Y + SAT++ L
Sbjct: 113 L---------------LP------------------KRKTY------LFSATMSSKVESL 133
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+ L P+ ++ + L+SY L K K YLV LL + I+FT +V
Sbjct: 134 QRASLSDPVRVSVSTKNQTASKLLQSY-LFIPHKFKDFYLVYLLNERAGQMGIIFTRTVH 192
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
T RL +L + G I I G QS R +L FR +L+++D RG+D+
Sbjct: 193 ETQRLSIMLRNLGFPAIPI---HGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPA 249
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
V+ V+NYD P KTYIHR GRTARAG+ G F+ + + EV+
Sbjct: 250 VDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVE 291
>gi|337744819|ref|YP_004638981.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336296008|gb|AEI39111.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
Length = 425
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 182/382 (47%), Gaps = 67/382 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVLPTRDLALQ 71
+ +E I L D+ + TG+GKTL++ LPI++++ NR+ ++AL+V PTR+LA+Q
Sbjct: 30 IQREAIPSVLGGHDVIAQAQTGTGKTLAFVLPILESIDPNRS--HVQALIVTPTRELAIQ 87
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
+ + A AP G+ V A G D E +++L+ A+ I+
Sbjct: 88 ITEEVARWAPLKGIRVLSAYG---------------------GQDVERQIRKLEGAIHII 126
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL+DH+ L L LV+DE D++L + +LP V+++ + R +
Sbjct: 127 VATPGRLLDHLR-RETVQLFKLSTLVLDEADQML---HMGFLPEVVEIISATPTRRQT-- 180
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
++ SAT+ + +LA+ + P+ +
Sbjct: 181 ---------------------------------LLFSATMPERVRQLAKEYMKPPVEIEV 207
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R L E +E + + K L AL +++ E+ + + R L +
Sbjct: 208 KAKRVTLDE-IEQIVVQTTDRGK---LDALCKAMEEDPPFLGMIFCRTKLRATKLRDELD 263
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
E + E G Q+ R + +K FR+ KIQ LV++D RG+DVEG+ +V NYD P
Sbjct: 264 ERGYAVDELHGDLTQAKREQVMKRFRDAKIQFLVATDIAARGLDVEGITHVYNYDIPHDA 323
Query: 372 KTYIHRAGRTARAGQLGRCFTL 393
++YIHR GRT RAGQ G+ T
Sbjct: 324 ESYIHRIGRTGRAGQTGKAITF 345
>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase [Opitutus terrae PB90-1]
gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
Length = 403
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 178/378 (47%), Gaps = 72/378 (19%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+ ++ TG+GKT ++ALPI+Q LS LR L++ PTR+LALQV++ F A L
Sbjct: 42 DVIGSAQTGTGKTAAFALPIIQRLSTHG--RLRCLILEPTRELALQVEEAFHKFAKFTDL 99
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
V + G G+ Y + +L+ +DIL ATPGRL+DH+
Sbjct: 100 RVTIVYG-------------------GVGYGKQ--TSDLKRGMDILAATPGRLLDHLGQG 138
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
+LE + LV+DE DR+L +LP V K +
Sbjct: 139 N-CSLEDVEILVLDEVDRMLD---MGFLPDVR-------------------------KIV 169
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES- 264
+RC P R + SATL + +LA LH+P + G R + P S
Sbjct: 170 QRC---------PKARQT-LFFSATLPPELEQLAGWALHNPTKVEIG--RVRSPAETVSH 217
Query: 265 --YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
Y ++ K L L LL+ + ++F + R+ L G + +
Sbjct: 218 GFYPVVASQKFDLLQL--LLERTEFKSVLIFCRTRMGADRIAHRLKTKGHT-VGVMHSDR 274
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
QR+ R + L F+ GK +VLV++D RG+D+ GV++V+NYD P + Y+HR GRT
Sbjct: 275 SQRE--RIEALDGFKSGKFEVLVATDIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTG 332
Query: 383 RAGQLGRCFTLLHKDEVK 400
RA G FTL+ +++V+
Sbjct: 333 RAHHTGDAFTLVTEEDVR 350
>gi|171689754|ref|XP_001909817.1| hypothetical protein [Podospora anserina S mat+]
gi|170944839|emb|CAP70951.1| unnamed protein product [Podospora anserina S mat+]
Length = 898
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 153/315 (48%), Gaps = 65/315 (20%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G F VQ AV + + D+ + +PTGSGKTLSY LP++Q +S + LRAL+
Sbjct: 329 GFKEAFAVQTAVLPLLLPNPDRQGDVVVAAPTGSGKTLSYVLPMIQDISYGRITNLRALI 388
Query: 62 VLPTRDLALQVKDVFAAIAPAVG------LSVGLAVGQSSIADEISELIKRPKLEAGICY 115
VLPTRDL QV+ A A A + +G AVG +E S ++++ K G
Sbjct: 389 VLPTRDLVQQVQQTCEACAAAFASNGGKRVKIGTAVGNKVFKEEQSAIVEK-KARYGTAE 447
Query: 116 D-----------------PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158
D PED S VD+L+ TPGRL++HI T GFTL+++ +LVV
Sbjct: 448 DSHSMEALSSWTASENINPED----YASKVDVLICTPGRLVEHIKQTPGFTLDYVRWLVV 503
Query: 159 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 218
DE D+LL + +Q WL VL + VER +
Sbjct: 504 DEADKLLAQDFQQWLNLVLD----------------------------KLSVERRPSRRV 535
Query: 219 YPR-----LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKL-IC 269
+P+ + K++LSAT+T D + L L L P + T+ LP L+ Y + +
Sbjct: 536 FPKSNKKGVRKVILSATMTHDISMLNLLKLSRPKLVVLEGTKAGDQSLPPLLKEYAIKVR 595
Query: 270 ESKLKPLYLVALLQS 284
E LKPLYLV LLQS
Sbjct: 596 EPSLKPLYLVDLLQS 610
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 290 CIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
++FT S E+ RL LL L I + + R+ TL+AF + K+++LV+SD
Sbjct: 707 ALIFTKSNEAALRLSRLLAILVPGLAHLIGTLTSTTKTIRRTHTLRAFTQAKLRILVASD 766
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+RG+D+ + +V+NYD P Y+HR GRTARAG+ G +TLL E +RF
Sbjct: 767 IASRGLDLPNLEHVINYDLPISETAYVHRVGRTARAGRAGAAWTLLEHSEARRF 820
>gi|198277297|ref|ZP_03209828.1| hypothetical protein BACPLE_03509 [Bacteroides plebeius DSM 17135]
gi|198269795|gb|EDY94065.1| DEAD/DEAH box helicase [Bacteroides plebeius DSM 17135]
Length = 438
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 182/396 (45%), Gaps = 74/396 (18%)
Query: 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 62
++++ + W+E DL + SPTGSGKTL+Y LP+V +L + V ++A+V+
Sbjct: 15 LNAMQEASIDAWKEG-------SDLILLSPTGSGKTLAYLLPLVSSL-KKGVEGVQAVVL 66
Query: 63 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 122
+P+R+LALQ++ VF A+A G V G RP +E ++
Sbjct: 67 VPSRELALQIEQVFKAMA--TGFPVMSCYG------------GRPAMEE------HRTMK 106
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 182
+ AV ++ TPGR+ DH+N + F + LV+DE D+ L +Q + V+
Sbjct: 107 GISPAV--IIGTPGRMNDHLNK-QNFEAGTVRTLVIDEFDKCLEFGFQDEMAEVI----- 158
Query: 183 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 242
G L +RR + + PR M N+ +LD
Sbjct: 159 -----------------GKLPALRRRFLLSATDAEEIPRFTGM----------NRTLKLD 191
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
FL ET + +RL Y++ K K L LL +LG E +VF + ES R
Sbjct: 192 -----FLNPEET---VSQRLSVYRVTSPVKDKLETLYKLLCTLGNESTLVFCNHRESVDR 243
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
+ L+ +++ + + G Q R + L FR G + +S+D RG+D+ + +V
Sbjct: 244 VGKYLH---SMKVYCETFHGGMEQDDRERALYKFRNGSCHIFISTDLAARGLDIPDIRHV 300
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
V+Y P +IHR GRTAR G F +LH +E
Sbjct: 301 VHYHLPVAEDGFIHRNGRTARWEAEGNAFLILHDEE 336
>gi|401429120|ref|XP_003879042.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495292|emb|CBZ30595.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 405
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 182/406 (44%), Gaps = 69/406 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V +E I L +D+ + G+GKT S+ +P+++ + R ++AL+++PTR+LALQ
Sbjct: 56 VQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLEKVDTRE-SYVQALLMVPTRELALQT 114
Query: 73 KDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
V + + GL V + G +++ D+I L S V IL
Sbjct: 115 AQVTKELGKHIPGLEVMVTTGGTTLRDDILRLT---------------------SKVHIL 153
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGR++D + + + L H LV+DE D+LL + + + D
Sbjct: 154 VATPGRVLD-LASKKAVDLSHCHILVLDEADKLLSQEFMEII---------------DDL 197
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT- 250
T+LPS S M+ SAT A+ LH+P +
Sbjct: 198 YTYLPSQLQS-----------------------MLFSATFPVTVKTFAERHLHNPYEINL 234
Query: 251 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 310
E K + Y E + K L L L + I+F +SV L +
Sbjct: 235 MDELTLK---GVTQYYAFVEERQKIHCLNTLFNKLQINQSIIFCNSVNRVELLAKKITQL 291
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
G I ++ +Q+Q R++ FREG + LV SD +TRG+D++ VN V+N+D P Y
Sbjct: 292 GYSCYYI--HARMQQQH-RNRVFHDFREGHCRNLVCSDLITRGIDIQAVNVVINFDFPKY 348
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+TY+HR GR+ R G LG + D+ ++ Q+ D + PI
Sbjct: 349 AETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIEQELDTEIKPI 394
>gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016]
Length = 408
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 197/428 (46%), Gaps = 76/428 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLP 64
P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ P
Sbjct: 26 PTQIQA--EAIPQALEGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARVLILTP 83
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQE 123
TR+LA+QV D A+A L++ G G+ Y D+L
Sbjct: 84 TRELAMQVADQARALAKNTSLNIFTITG-------------------GVQYQEHADILAT 124
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
Q DI+VATPGRLM++I A R F + +L++DE DR+L + PTV +L+
Sbjct: 125 TQ---DIVVATPGRLMEYIQAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS--- 174
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
NE R+ T L SA T+ GVE GF +A L DP A +D
Sbjct: 175 NECRWR-KQTMLFSA-----TLEGKGVE-GF-------------TADLLNDP---ADID- 210
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 303
E + +++ + +S L L+ + + E+ IVF + E RL
Sbjct: 211 --------AEPSRRERKKITQWYYRADSMEHKLALLKDIINNQAERTIVFLKTRE---RL 259
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
L H ++ G Q R+ + FR+G + VL+++D RG+D+ V++VV
Sbjct: 260 ADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLLATDVAARGIDLPDVSHVV 319
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423
N+D P Y+HR GRTARAG+ G +++ + ++ + D I
Sbjct: 320 NFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVKED------IKERF 373
Query: 424 IESLRPVY 431
++ LRP +
Sbjct: 374 VKELRPQH 381
>gi|398022937|ref|XP_003864630.1| ATP-dependent DEAD-box RNA helicase, putative [Leishmania donovani]
gi|322502866|emb|CBZ37948.1| ATP-dependent DEAD-box RNA helicase, putative [Leishmania donovani]
Length = 405
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 182/406 (44%), Gaps = 69/406 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V +E I L +D+ + G+GKT S+ +P+++ + R ++AL+++PTR+LALQ
Sbjct: 56 VQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLEKVDTRE-SYVQALLMVPTRELALQT 114
Query: 73 KDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
V + + GL V + G +++ D+I L S V IL
Sbjct: 115 AQVTKELGKHIPGLEVMVTTGGTTLRDDILRLT---------------------SKVHIL 153
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGR++D + + + L H LV+DE D+LL + + + D
Sbjct: 154 VATPGRVLD-LASKKAVDLSHCHILVLDEADKLLSQEFMEII---------------DDL 197
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT- 250
T+LPS S M+ SAT A+ LH+P +
Sbjct: 198 YTYLPSQLQS-----------------------MLFSATFPVTVKTFAERHLHNPYEINL 234
Query: 251 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 310
E K + Y E + K L L L + I+F +SV L +
Sbjct: 235 MDELTLK---GVTQYYAFVEERQKIHCLNTLFNKLQINQSIIFCNSVNRVELLAKKITQL 291
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
G I ++ +Q+Q R++ FREG + LV SD +TRG+D++ VN V+N+D P Y
Sbjct: 292 GYSCYYI--HARMQQQH-RNRVFHDFREGHCRNLVCSDLITRGIDIQAVNVVINFDFPKY 348
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+TY+HR GR+ R G LG + D+ ++ Q+ D + PI
Sbjct: 349 AETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIEQELDTEIKPI 394
>gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
Length = 408
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 197/428 (46%), Gaps = 76/428 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLP 64
P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ P
Sbjct: 26 PTQIQA--EAIPQALEGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARVLILTP 83
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQE 123
TR+LA+QV D A+A L++ G G+ Y D+L
Sbjct: 84 TRELAMQVADQARALAKNTSLNIFTITG-------------------GVQYQEHADILAT 124
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
Q DI+VATPGRLM++I A R F + +L++DE DR+L + PTV +L+
Sbjct: 125 TQ---DIVVATPGRLMEYIQAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS--- 174
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
NE R+ T L SA T+ GVE GF +A L DP A +D
Sbjct: 175 NECRWR-KQTMLFSA-----TLEGKGVE-GF-------------TADLLNDP---ADID- 210
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 303
E + +++ + +S L L+ + + E+ IVF + E RL
Sbjct: 211 --------AEPSRRERKKITQWYYRADSMEHKLALLKDIINNQAERTIVFLKTRE---RL 259
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
L H ++ G Q R+ + FR+G + VL+++D RG+D+ V++VV
Sbjct: 260 ADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLLATDVAARGIDLPDVSHVV 319
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423
N+D P Y+HR GRTARAG+ G +++ + ++ + D I
Sbjct: 320 NFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVKED------IKERF 373
Query: 424 IESLRPVY 431
++ LRP +
Sbjct: 374 VKELRPQH 381
>gi|302785159|ref|XP_002974351.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
gi|300157949|gb|EFJ24573.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
Length = 523
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 118/419 (28%), Positives = 205/419 (48%), Gaps = 67/419 (15%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAVRCLRAL 60
P+Q+A +I GL +RD+ + TGSGKT ++ +P++ +S RA+ AL
Sbjct: 139 PIQMA----SIPLGLQQRDVIGIAGTGSGKTAAFVIPMLMYVSRLPKMTLERAIEGPYAL 194
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PT +LA Q+++ +A + ++V V +I + S+L++
Sbjct: 195 VMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQSSKLLQ--------------- 239
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETDRLLREAYQAWLPTVLQL 179
+I++ATPGRL+ + +G+ + H C Y+V+DE DR++ +
Sbjct: 240 ------GCEIVIATPGRLLHCLE--QGYAVLHQCNYVVLDEGDRMIALGF---------- 281
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
E + DA +PS+ ++ + +D+ Y R M SAT+ +LA
Sbjct: 282 -----EEQVIDALEAMPSS-----NMKPESEDVELEDRIY-RTTYM-FSATMPPAVERLA 329
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+ L +P+ +T E + +R+ ++ + + KP L LL LGE IVF ++ +
Sbjct: 330 KKYLRNPVVVTIEE----MSKRISQKVMMVDEEEKPKRLRRLLDELGEMSTIVFVNTKKQ 385
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
++ L+ G IK+ G + Q R + FR + L+++D + RG+DV V
Sbjct: 386 ADKVSKQLHDMG---IKVATIHGGKTQQKRQTNFQDFRSKRRSCLIATDVVGRGIDVPDV 442
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF---KKLLQKADNDSCP 415
++VNYD P+ ++ YIHR GRT RAG+ G T L ++ + F K+LL + N P
Sbjct: 443 GHIVNYDMPSTVEMYIHRIGRTGRAGKSGAATTFLTLNDSEVFYDLKQLLVRTKNPVPP 501
>gi|198424759|ref|XP_002127650.1| PREDICTED: similar to Ddx10 protein [Ciona intestinalis]
Length = 736
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 182/412 (44%), Gaps = 72/412 (17%)
Query: 11 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR---ALVVLPTRD 67
A+ + I P + +D+ + TGSGKTL++ +PI++ L L ALV+ PTR+
Sbjct: 72 TAIQRAAIKPAMLGKDILGAAKTGSGKTLAFIIPILECLHKHNWNSLDGPGALVISPTRE 131
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ +V + S GL +G +++ +E + K
Sbjct: 132 LAFQIFEVLKKVGGKHNFSAGLLIGGNNVKEEAHSVGK---------------------- 169
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+I++ TPGRL+ H++ T F + +L L++DE DR+L ++ L ++ EN
Sbjct: 170 TNIIICTPGRLLQHMDTTSYFHMNNLKMLILDEADRILDMGFKTTLDAII-------EN- 221
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
LPS +L + SAT T+ LA+L L P
Sbjct: 222 -------LPSERQTL-----------------------LFSATQTKSVKDLARLSLRDPA 251
Query: 248 FLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+++ E ++ P+ L + CE K K L + +++ + KC+VF SS + +
Sbjct: 252 YISVHSEAKHSTPQGLTQRFICCELKDKLNVLFSFIRNHQKSKCLVFVSSCKQVQ---FI 308
Query: 307 LNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
F +LR + G Q R + F K VLV++D RG+D ++ VV
Sbjct: 309 FAAFCKLRPGTPMLHLHGRMNQLRRMSVYQEFCRKKFAVLVATDIAARGLDFPEIDWVVQ 368
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
D P TYIHRAGRTAR G +L E + K LQ N PI
Sbjct: 369 LDCPEDADTYIHRAGRTARYNGNGNSLLVLTPTEKEAMLKHLQ---NKKVPI 417
>gi|416896375|ref|ZP_11926222.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|417118486|ref|ZP_11969004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
gi|422800154|ref|ZP_16848652.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|386138020|gb|EIG79180.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKNLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|377577364|ref|ZP_09806346.1| ATP-dependent RNA helicase RhlE [Escherichia hermannii NBRC 105704]
gi|377541102|dbj|GAB51511.1| ATP-dependent RNA helicase RhlE [Escherichia hermannii NBRC 105704]
Length = 488
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 191/407 (46%), Gaps = 80/407 (19%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVKDVFAAI 79
RDL ++ TG+GKT + LP++Q L+++ R +RAL++ PTR+LA QV
Sbjct: 39 RDLMASAQTGTGKTAGFTLPLLQLLTDKPYQAKGNRPVRALILTPTRELAAQV------- 91
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
G V + S I L+ + G+ +P+ + +L+ VD+L+ATPGRL+
Sbjct: 92 --------GENVREYSKYLNIRSLV----VFGGVSINPQ--MMKLRGGVDVLIATPGRLL 137
Query: 140 D--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 197
D H NA + L+ + LV+DE DR+L
Sbjct: 138 DLEHQNAVK---LDKVEILVLDEADRML-------------------------------- 162
Query: 198 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 257
G + IRR K PR ++ SAT + D LA+ LH+P + R
Sbjct: 163 DMGFIHDIRRVLA------KLPPRRQNLLFSATFSDDIKSLAEKLLHNPAEVEVAR-RNT 215
Query: 258 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 317
E++ Y + K K L ++ ++ +VFT + + L LN G I+
Sbjct: 216 ASEQITQYVHFVDKKRKRELLSLMIGKENWQQVLVFTRTKHGANHLAEQLNKDG---IRS 272
Query: 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 377
G + Q R++ L F+ G ++VLV++D RG+D+E + +VVNY+ P + Y+HR
Sbjct: 273 AAIHGNKSQGARTRALADFKSGDLRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR 332
Query: 378 AGRTARAGQLGRCFTLLHKDE---VKRFKKLLQKADNDSCPIHSIPS 421
GRT RA G+ +L+ DE ++ ++LL++ P +IP
Sbjct: 333 IGRTGRAAATGQALSLVCVDEHKLLRDIERLLKR----EVPRMAIPG 375
>gi|67516711|ref|XP_658241.1| hypothetical protein AN0637.2 [Aspergillus nidulans FGSC A4]
gi|40746024|gb|EAA65180.1| hypothetical protein AN0637.2 [Aspergillus nidulans FGSC A4]
gi|259489096|tpe|CBF89085.1| TPA: DEAD/DEAH box helicase, putative (AFU_orthologue;
AFUA_1G16940) [Aspergillus nidulans FGSC A4]
Length = 853
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 153/330 (46%), Gaps = 76/330 (23%)
Query: 2 GISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G F VQ AV + GP D+C+++ TGSGKTLSY LP+V L LR L
Sbjct: 270 GYKEAFAVQAAVIPLLLKGPNNHTGDICVSAATGSGKTLSYVLPLVTELEQIPAPRLRGL 329
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
+V+PTR+L Q ++ GL VG AVG +I DE L+ ++E Y PE V
Sbjct: 330 IVVPTRELVKQAREACEFCTAGTGLRVGSAVGNVAIKDEQRSLM---RIEH--VYSPESV 384
Query: 121 -----------------LQEL------------------QSAVDILVATPGRLMDHINAT 145
LQ+ + VDIL+ TPGRL+DHI T
Sbjct: 385 ESRRKAELTGEEWADFSLQDYISNTTDLGETLPGYIHRGEPNVDILICTPGRLVDHIRYT 444
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKT 204
+GFTL+HL +LV+DE DRLL E++Q W+ V+Q L F + FL SL+T
Sbjct: 445 KGFTLKHLQWLVIDEADRLLNESFQEWVDVVMQSLDARKAYGAFGPSGRFLADLGMSLQT 504
Query: 205 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG------------ 252
PR K+VLSAT+T+D +KL L L +P + G
Sbjct: 505 KE-------------PR--KVVLSATMTKDVSKLNSLRLTNPRLVVVGGSDQTTTADDES 549
Query: 253 ------ETRYKLPERLESYKL-ICESKLKP 275
+ R+ LP L Y + + + + KP
Sbjct: 550 GVVVHADERFTLPTTLREYSIAVGDGEHKP 579
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
+ S KTL A+R+GKI +++++D +RG+D++ + +V+NYD PA I TY+HR GRTAR
Sbjct: 719 NKSSASRKTLSAYRQGKISIIIATDRASRGLDLQSLTHVINYDVPASITTYVHRVGRTAR 778
Query: 384 AGQLGRCFTLLHKDEVKRFKKLLQKADN 411
AG G +TL+ E + F + K N
Sbjct: 779 AGNEGSAWTLVAHREGRWFTNEISKGSN 806
>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 455
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR K P+ ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLA------KLPPKRQNLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L L+ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSLLIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G ++VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDLRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKLLRDIEKLLKK 366
>gi|310796139|gb|EFQ31600.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 873
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 166/334 (49%), Gaps = 82/334 (24%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
G F VQ A + + P R DL I + TGSGKTL+YALP+V+ +S AV LRA
Sbjct: 310 GFRDAFAVQTAAFPLLL-PSCKHRQGDLLIAAATGSGKTLAYALPVVRDISQGAVTRLRA 368
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVG------LSVGLAVGQSSIADEISELIKRPKLEAGI 113
LVVLPTR+L Q ++VF A A + +G+++G + E + L++R +
Sbjct: 369 LVVLPTRELVKQAQEVFELCAGAFDGRDQKRVRIGISIGSQQLRHEQAALVEREER---- 424
Query: 114 CYDPE-----------------------------------DVLQELQSAVDILVATPGRL 138
YDPE D + + S VD+L+ TPGRL
Sbjct: 425 -YDPEAYRAARSRELEAWMDVEEPATPAGSKDAAAAGSLPDHVVDYTSKVDVLICTPGRL 483
Query: 139 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
++HIN T GF+L+H+ +LVVDE D+LL +++Q WL V+ R+ N+FS A F S
Sbjct: 484 VEHINLTPGFSLDHVRWLVVDEADKLLAQSFQGWLDVVMPKLRT---NKFS-ARDFPDSN 539
Query: 199 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGE---- 253
G GV R K+VLSATLT+D + L+ L L P L + G
Sbjct: 540 LG--------GVVR-----------KIVLSATLTRDLSLLSGLHLRRPQLIVLEGSQADG 580
Query: 254 ----TRYKLPERL-ESYKLICESKLKPLYLVALL 282
+ LP L ES + ++ LKPLYL+ LL
Sbjct: 581 SAPIAEHTLPTLLKESAIRVHDANLKPLYLIDLL 614
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 290 CIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
++FT S ES RL L+ L I + Q+ S R + L+AF ++++LV+SD
Sbjct: 704 ALIFTKSNESVLRLSRLIALLEPSLAPSIATLTSTQKTSDRRRALRAFAGRRLRLLVASD 763
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
+ RG+D+ ++NVVNYD PA Y+HR GRT RAG+ G
Sbjct: 764 LVARGVDLPLLDNVVNYDLPASAAGYVHRDGRTDRAGRAG 803
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 124/424 (29%), Positives = 200/424 (47%), Gaps = 75/424 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRA 59
GI+SLFP+Q V++ P + DL + TGSGKTL++A+PI++ + R +R +
Sbjct: 170 GITSLFPIQKTVFE----PAMRGADLIARAKTGSGKTLAFAIPIIEKIMAGPRNLRKPQC 225
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV+ AA AP +G P+
Sbjct: 226 LVLAPTRELAKQVEREIAATAPGLGCGCYYGGN---------------------PIGPQ- 263
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L+EL+ VDI+V TPGR++D I+ L + ++V+DE D++L ++ + T+L
Sbjct: 264 -LKELRRGVDIVVGTPGRIIDLIDQD-ALDLSMVRFVVLDEADQMLNVGFEKDVETIL-- 319
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
EN + T L SA PR VK ++ L N
Sbjct: 320 -----ENVPQERQTMLFSAT-------------------LPRWVKKLVKQYLNNPEN--- 352
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSV- 297
+DL + G T P+ + + + +++ LV LL GE K IVFT +
Sbjct: 353 -IDL-----VGEGNTGQD-PDSITALAVPADARRS--VLVDLLTVYGEGGKAIVFTQTKR 403
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
E+ ++ H + G Q R K L +FR K+ VLV++D RG+D+
Sbjct: 404 EADEVAASVGGH-----LPCGALHGDMSQREREKVLASFRANKLMVLVATDVAARGLDIP 458
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 417
V+ VV+Y+ P ++++HR+GRT RAG+ G + E+ FK++L++ + +
Sbjct: 459 DVDVVVHYELPQDPESFLHRSGRTGRAGKSGTAIAMFQPKEIGYFKRILRETEVQGVKLI 518
Query: 418 SIPS 421
+ PS
Sbjct: 519 TAPS 522
>gi|146100408|ref|XP_001468856.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania infantum
JPCM5]
gi|134073225|emb|CAM71946.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania infantum
JPCM5]
Length = 405
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 182/406 (44%), Gaps = 69/406 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V +E I L +D+ + G+GKT S+ +P+++ + R ++AL+++PTR+LALQ
Sbjct: 56 VQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLEKVDTRE-SYVQALLMVPTRELALQT 114
Query: 73 KDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
V + + GL V + G +++ D+I L S V IL
Sbjct: 115 AQVTKELGKHIPGLEVMVTTGGTTLRDDILRLT---------------------SKVHIL 153
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGR++D + + + L H LV+DE D+LL + + + D
Sbjct: 154 VATPGRVLD-LASKKAVDLSHCHILVLDEADKLLSQEFMEII---------------DDL 197
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT- 250
T+LPS S M+ SAT A+ LH+P +
Sbjct: 198 YTYLPSQLQS-----------------------MLFSATFPVTVKTFAERHLHNPYEINL 234
Query: 251 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 310
E K + Y E + K L L L + I+F +SV L +
Sbjct: 235 MDELTLK---GVTQYYAFVEERQKIHCLNTLFNKLQINQSIIFCNSVNRVELLAKKITQL 291
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
G I ++ +Q+Q R++ FREG + LV SD +TRG+D++ VN V+N+D P Y
Sbjct: 292 GYSCYYI--HARMQQQH-RNRVFHDFREGHCRNLVCSDLITRGIDIQAVNVVINFDFPKY 348
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+TY+HR GR+ R G LG + D+ ++ Q+ D + PI
Sbjct: 349 SETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIEQELDTEIKPI 394
>gi|392404056|ref|YP_006440668.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
gi|390612010|gb|AFM13162.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
Length = 424
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 186/400 (46%), Gaps = 68/400 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + +E I L +D+ + TG+GKT ++ LP+++ LS + R +RALVV PTR
Sbjct: 22 FKAPTPIQKEAIPHALAGKDILGLAQTGTGKTAAFVLPMLEKLSAQPARKIRALVVAPTR 81
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ V + L G +S+ ++ EL K
Sbjct: 82 ELAEQIHQVIVTLGKDTRLQSMTIYGGASMNRQLGELRK--------------------- 120
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
VDI+VA PGRL+DH+ + TL+ + LV+DE D++ +LP + Q+ +
Sbjct: 121 GVDIVVACPGRLLDHLQ-RKSLTLDAVETLVLDEADQMFD---MGFLPAIKQIVAKLPQK 176
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
R + M+ SAT+ ++ KL+ L P
Sbjct: 177 RQT-----------------------------------MLFSATMPEEIRKLSAQILREP 201
Query: 247 LFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
+ + + P S+ L +LK L+ LL+ G++ +VFT ++ H+
Sbjct: 202 VKVELA----RGPVATISHALYPVTHELKTPLLLHLLKDAGDQPILVFT---KTKHKATR 254
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
L + + G Q+ R L F+ GK Q+LV++D RG+DV +++++NY
Sbjct: 255 LADQLAKAGFTTASLQGNLSQNRRDSALAGFKSGKYQILVATDIAARGIDVNNISHIINY 314
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
D PA +TYIHR GRTARA + G +T + ++ ++ +++
Sbjct: 315 DIPASSETYIHRIGRTARATKSGDAYTFVTSEDNRQVREI 354
>gi|417690323|ref|ZP_12339547.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
Length = 441
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 190/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SATL+ D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATLSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
Length = 398
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 187/400 (46%), Gaps = 82/400 (20%)
Query: 2 GISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
GI+ P+Q V P + E RD+ + TGSGKTL++ LP+++ + + ++ L
Sbjct: 21 GITEPTPIQTEVI-----PLMVEGRDVIAQAKTGSGKTLAFILPMLEKVDLEKI-AVQGL 74
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR--PKLEAGICYDPE 118
+V PTR+LA+QV DE+ +L++ P++ Y +
Sbjct: 75 IVAPTRELAIQV------------------------TDELKKLVELEFPEVNVLAVYGGQ 110
Query: 119 DVLQELQS----AVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWL 173
DV ++L + I+VATPGRL+DH+ RG L L L++DE D++L + +L
Sbjct: 111 DVEKQLHKLETRNIHIVVATPGRLLDHMR--RGTIDLSELDMLILDEADQML---HIGFL 165
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
P V Q+ + R + + SAT+++
Sbjct: 166 PEVEQIIEATPPTRQT-----------------------------------ALFSATISK 190
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
D LA+ P + + + +L E +E + + + K LV +++ I+F
Sbjct: 191 DVRTLAKRYQQQP-YTVQVKDKERLVEEIEQFVVETTDRKKLQALVEVIKETQPFMGIIF 249
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
++ +L L G L + E G Q+ R +K FR+ KIQ+L+++D RG
Sbjct: 250 CRTIRRVSKLHMELKAKGFL---VDELHGDLSQAKRENVMKRFRDAKIQLLIATDVAARG 306
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
+DVEGV +V NYD P +++YIHR GRT RAG+ G T
Sbjct: 307 LDVEGVTHVYNYDIPQDVESYIHRIGRTGRAGETGMAITF 346
>gi|320581178|gb|EFW95399.1| ATP-dependent RNA helicase DBP7 (DEAD-box protein 7) [Ogataea
parapolymorpha DL-1]
Length = 649
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/444 (28%), Positives = 199/444 (44%), Gaps = 74/444 (16%)
Query: 15 QETIGPGLF--ERDLCINSPTGSGKTLSYALPIVQTLSN----RAVRCLRALVVLPTRDL 68
Q+ + P L DL + + TGSGKTL++ALPI Q L L AL++ PTR+L
Sbjct: 149 QQQVIPRLLAGNNDLFVQAQTGSGKTLAFALPIFQKLMEIPNIDRTSGLFALILAPTREL 208
Query: 69 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
A Q+ VF +++ + G +G E + L K
Sbjct: 209 ATQIYSVFESLSRCHHKIVAGNVIGGEKKKSEKARLRK---------------------G 247
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
V+ILVATPGRL+DHI T+ L + Y+V+DE DRL+ ++ + +L
Sbjct: 248 VNILVATPGRLVDHIEHTQKLDLSKIRYVVLDEGDRLMELGFEESITKILH--------- 298
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
S +ST +P + SL R + ++ SAT+ KL +L L
Sbjct: 299 -SISSTAVPLQYPSLPAKR----------------ISILCSATIKSTVKKLGELSLEKAE 341
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIVFTSSVESTHRL 303
+TT E K+P++L ++ KL+ + L L++L ++ + IVF S S
Sbjct: 342 LVTTSEQITKVPDQLVQQVVVIPPKLRFVTLAGTLKNLIKDQTASRTIVFFSCSGSVDFH 401
Query: 304 CTLLNH-----------FGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMT 351
L FG K+ G Q R+ TLK F + +L+ +D +
Sbjct: 402 FIALTRKAASEDTSGTLFGSSIFKL---HGSLSQQTRTSTLKQFADSPNNAILLCTDVAS 458
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
RG+D+ +NNVV +D P + ++HR GRTARAG LG+ L + + + K+++
Sbjct: 459 RGLDLPHINNVVEFDPPFALDDHLHRVGRTARAGSLGKSVLFLLPGDEENYLKIIEPLHP 518
Query: 412 DSCPIHSIPSSLIESL-RPVYKSG 434
S L E+ +P K G
Sbjct: 519 SGIQFKKYESVLKEAFEKPGEKGG 542
>gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
Length = 441
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 198/428 (46%), Gaps = 76/428 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLP 64
P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ P
Sbjct: 59 PTQIQA--EAIPQALEGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARVLILTP 116
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQE 123
TR+LA+QV D A+A L++ G G+ Y + D+L
Sbjct: 117 TRELAMQVADQARALAKNTSLNIFTITG-------------------GVQYQEHADILAT 157
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
Q DI+VATPGRLM++I A R F + +L++DE DR+L + PTV +L+
Sbjct: 158 TQ---DIVVATPGRLMEYIQAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS--- 207
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
NE R+ T L SA T+ GVE GF +A L DP A +D
Sbjct: 208 NECRWR-KQTMLFSA-----TLEGKGVE-GF-------------TADLLNDP---ADID- 243
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 303
E + +++ + +S L L+ + + E+ IVF + E RL
Sbjct: 244 --------AEPSRRERKKITQWYYRADSMEHKLALLKDIINNQAERTIVFLKTRE---RL 292
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
L H ++ G Q R+ + FR+G + VL+++D RG+D+ V++VV
Sbjct: 293 ADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLLATDVAARGIDLPDVSHVV 352
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423
N+D P Y+HR GRTARAG+ G +++ + ++ + D I
Sbjct: 353 NFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVKED------IKERF 406
Query: 424 IESLRPVY 431
++ LRP +
Sbjct: 407 VKELRPQH 414
>gi|365105460|ref|ZP_09334707.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
gi|363643475|gb|EHL82793.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
Length = 448
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L ++ R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITNQPHGKSRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+L+ATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKSLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|420369243|ref|ZP_14869968.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391321569|gb|EIQ78292.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
Length = 447
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L ++ R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHGKSRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+L+ATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKSLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|302818333|ref|XP_002990840.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
gi|300141401|gb|EFJ08113.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
Length = 583
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 206/425 (48%), Gaps = 67/425 (15%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G P+Q+A +I GL +RD+ + TGSGKT ++ +P++ +S RA+
Sbjct: 204 GYKKPTPIQMA----SIPLGLQQRDVIGIAGTGSGKTAAFVIPMLMYVSRLPKMTLERAI 259
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
ALV+ PT +LA Q+++ +A + ++V V +I + S+L++
Sbjct: 260 EGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQSSKLLQ--------- 310
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETDRLLREAYQAWL 173
+I++ATPGRL+ + +G+ + H C Y+V+DE DR++ +
Sbjct: 311 ------------GCEIVIATPGRLLHCLE--QGYAVLHQCNYVVLDEGDRMIALGF---- 352
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
E + DA +PS+ ++ + +D+ Y R M SAT+
Sbjct: 353 -----------EEQVIDALEAMPSS-----NMKPESEDVELEDRIY-RTTYM-FSATMPP 394
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
+LA+ L +P+ +T E + +R+ ++ + + KP L LL LGE IVF
Sbjct: 395 AVERLAKKYLRNPVVVTIEE----MSKRISQKVIMVDEEEKPKRLRRLLDELGEMSTIVF 450
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
++ + ++ L+ G IK+ G + Q R + FR + L+++D + RG
Sbjct: 451 VNTKKQADKVSKQLHDMG---IKVATIHGGKTQQKRQTNFQDFRSKRRSCLIATDVVGRG 507
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF---KKLLQKAD 410
+DV V ++VNYD P+ ++ YIHR GRT RAG+ G T L ++ + F K+LL +
Sbjct: 508 IDVPDVGHIVNYDMPSTVEMYIHRIGRTGRAGKSGAATTFLTLNDSEVFYDLKQLLVRTK 567
Query: 411 NDSCP 415
N P
Sbjct: 568 NPVPP 572
>gi|395227497|ref|ZP_10405823.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|421844472|ref|ZP_16277630.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424728799|ref|ZP_18157404.1| atp-dependent rna helicase [Citrobacter sp. L17]
gi|394718825|gb|EJF24446.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|411774627|gb|EKS58117.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422896670|gb|EKU36452.1| atp-dependent rna helicase [Citrobacter sp. L17]
Length = 448
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L ++ R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITNQPHGKSRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+L+ATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKSLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|74143864|dbj|BAE41247.1| unnamed protein product [Mus musculus]
Length = 323
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 142/277 (51%), Gaps = 42/277 (15%)
Query: 129 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
+I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 12 NIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK--- 68
Query: 189 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 248
TFL SAT+T+ KL + L +P+
Sbjct: 69 ----TFL-------------------------------FSATMTKKVQKLQRAALKNPVK 93
Query: 249 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 94 CAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLR 152
Query: 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D P
Sbjct: 153 NLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIP 209
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+ K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 210 THSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 246
>gi|455643914|gb|EMF23035.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii GTC 09479]
Length = 448
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L ++ R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITNQPHGKSRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+L+ATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKSLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|315503770|ref|YP_004082657.1| dead/deah box helicase domain-containing protein [Micromonospora
sp. L5]
gi|315410389|gb|ADU08506.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
Length = 417
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 190/414 (45%), Gaps = 80/414 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--A 59
GIS+ FP+Q A TI L RD+ TGSGKTL++ LP++ + R R R A
Sbjct: 25 GISAPFPIQAA----TIPDSLAGRDVLGRGRTGSGKTLAFGLPLLHRTAGRRARPGRPLA 80
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV++PTR+LA QV + A A +GL VG S+ + + L
Sbjct: 81 LVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAAL---------------- 124
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++ ++LVATPGRL D I+ RG L+ + V+DE D++ A +LP V +
Sbjct: 125 -----RAGAEVLVATPGRLHDLID--RGDARLDQVAITVLDEADQM---ADMGFLPQVTK 174
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ--DPN 236
L A G + + ++RG RLV+ L+ +T DP
Sbjct: 175 LLEQ--------------VAPGGQRMLFSATLDRGVD-----RLVRRFLTDPVTHSVDPG 215
Query: 237 KLAQLDL-HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
+ HH L L +++ KP L + E + IVF +
Sbjct: 216 TATVTAMTHHVLHL--------------------DAEDKPAALAHIAAR--EGRTIVFIA 253
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ R+ L G ++ G + Q R++ L+ FR G++ LV++D RG+
Sbjct: 254 TKHRADRVARQLLAKG---VRAAALHGGKSQPQRTRILEQFRTGQVTALVATDVAARGIH 310
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
V+G++ VVN D P K Y+HR GRTARAG+ G TL+ D+ + +L+ A
Sbjct: 311 VDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVARLMTTA 364
>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
4136]
Length = 452
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 185/408 (45%), Gaps = 72/408 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN----RAVRCL 57
G S P+Q A + + D+ + TG+GKT ++ LP++ L+ +R +
Sbjct: 20 GYSEPTPIQAAAIPQVVA----GHDMIGIAQTGTGKTAAFTLPMLHLLAQLHGQGPLRGI 75
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+AL++ PTR+L Q+ D A A + L V + G +RP++EA
Sbjct: 76 KALILAPTRELVAQIHDNVRAYAKHLPLKVAMIFGGVG---------ERPQIEA------ 120
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
L++ D+++ATPGRL+D + G L +LV+DE DR+L
Sbjct: 121 ------LRAGTDLVIATPGRLIDLMGQRHG-NFNSLEFLVLDEADRMLDMG--------- 164
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
FLPS ++R K P R ++ SATL+++
Sbjct: 165 ----------------FLPS------------IKRIVKALPKKRQT-LLFSATLSKEIEA 195
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
L L+HP + G+ R E + + LKP LV LL+ +VF+
Sbjct: 196 LTHEFLNHPKTVQIGK-RSNPAESVTQFVYEVPKHLKPALLVHLLKDPAFNMVLVFSRMK 254
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
R+ L+ +G IK + Q+ R + L F+ G +VLV++D RG+DV+
Sbjct: 255 HGADRIARHLDRYG---IKTVTLHSNRTQNQRLRALADFKSGAARVLVATDIAARGIDVD 311
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
G+++VVNYD P + + Y+HR GRT RA +G + + ++ K L
Sbjct: 312 GISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFISPEDHGPLKSL 359
>gi|419231381|ref|ZP_13774170.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
gi|378081545|gb|EHW43497.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
Length = 454
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRSVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
Length = 448
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L ++ R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITNQPHGKSRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+L+ATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPTKRQ-NLLFSATFSDDIKSLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain-containing protein [Leadbetterella
byssophila DSM 17132]
gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
DSM 17132]
Length = 619
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 195/429 (45%), Gaps = 83/429 (19%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG + P+Q A I + RD+ + TG+GKT ++ +P ++ + N R + L
Sbjct: 86 MGFTESTPIQTA----AIPVVMSGRDVIGQAQTGTGKTAAFGIPAIEHV-NAEDRNTQVL 140
Query: 61 VVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
++ PTR+LALQVK+ +A GL V G G Y+ +
Sbjct: 141 ILCPTRELALQVKEQLTLLAKYKKGLLVSAIYG-------------------GESYERQ- 180
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L+ I+V TPGR+MDHI + L+++ +++DE D +L ++ + +L
Sbjct: 181 -FANLKRGTQIVVGTPGRIMDHIEK-KTLKLDNISMVILDEADEMLNMGFREDIEQILSF 238
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+ D + T L SA S + + + + F++ P +VK+ ++
Sbjct: 239 AKEDRQ-------TVLFSATMSKEIL---NITKKFQNDP--EIVKVT--------RKEIT 278
Query: 240 QLDLHHPLFLTTGETRYKLPERL------ESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
++ +L E +++L RL + + C +K K +V LQ+ G
Sbjct: 279 NTNIEQSYYLVKKEAKFELMVRLIDVHDLQLMLVFCNTKSKVDEIVEELQANG------- 331
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
+ E H G RQ+ R++ + FR G ++LV++D RG
Sbjct: 332 -YAAEGLH--------------------GDMRQAARNQVMNKFRNGNTKILVATDVAARG 370
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 413
+DV GV+ V+NYD P ++ Y+HR GRT RAG+LG+ F + K + R + L Q +
Sbjct: 371 IDVSGVDAVINYDLPMDLEYYVHRIGRTGRAGKLGKAFLFITKRDRSRMRDLEQYT-KVA 429
Query: 414 CPIHSIPSS 422
P IP+S
Sbjct: 430 IPQGKIPTS 438
>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 441
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 195/411 (47%), Gaps = 64/411 (15%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+GIS VQ A ++ I + + S TG+GKT ++ALPI+ TLS + AL
Sbjct: 21 IGISKPTAVQQACVKQIITG----HNCIVISQTGTGKTAAFALPIISTLSKDPY-GIYAL 75
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ F + + +G +I D+ S L K P
Sbjct: 76 VISPTRELAQQICQQFKIFGRGMNADICPIIGGLAITDQASALEKNPH------------ 123
Query: 121 LQELQSAVDILVATPGRLMDHI-NATRG---FTLEHLCYLVVDETDRLLREAYQAWLPTV 176
I+VATPGR++ H+ +A++G F+ ++L YLV+DE DRL ++ Y W V
Sbjct: 124 ---------IVVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDRLFKDGY--W-DDV 171
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA---TLTQ 233
L++ + E R + + S L TI P P + K S T
Sbjct: 172 LEIIKYLPEKRQTLCFSATKSDQVDLLTI--MTKPPSTSSCPLPSVGKSWFSDDKLTFYW 229
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE----EK 289
+P L ++E K++ + + + +YL+ ++Q L E ++
Sbjct: 230 EPTD-------------------DLKPKIEHVKVLVQDEGREVYLMIIIQKLMEADLYKQ 270
Query: 290 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
IVF S+ E+ + +L +F K ++S R K L+ FR G+ ++LV++D
Sbjct: 271 VIVFASTKEAAQTITLILRNFS---YKTAVMHSDMQESERLKELEEFRAGRQRILVATDV 327
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
RG+D+ V+NV++++ P TY+HRAGRT RAG+ GR + E K
Sbjct: 328 AARGLDIPFVDNVIHFNPPQNAATYVHRAGRTGRAGREGRSILFVSGREKK 378
>gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 450
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 190/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP+++ L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELLVKNQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSRYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+++ LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDNVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR K PR ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLA------KLPPRRQNLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEVEVAR-RNTASEQVTQHVHFVDKKRKRELLSHMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKK 366
>gi|408825690|ref|ZP_11210580.1| DEAD/DEAH box helicase [Streptomyces somaliensis DSM 40738]
Length = 439
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 188/411 (45%), Gaps = 74/411 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--A 59
G+++ FP+Q A + L RD+ TGSGKTL++ L ++ L R A
Sbjct: 30 GVTAPFPIQAATLPNS----LAGRDVLGRDRTGSGKTLAFGLALLARLDGVRAEPKRPLA 85
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV++PTR+LA QV D A A A+GL VG SI ++S L
Sbjct: 86 LVLVPTRELAQQVTDALAPYARALGLRQATVVGGVSIGRQVSAL---------------- 129
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++ D+LVATPGRL D + TRG L+ + V+DE D++ + + +L+
Sbjct: 130 -----RAGADVLVATPGRLRDLV--TRGDCLLDDVDVTVLDEADQMTDMGFLPQITGLLE 182
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LTR D + +M+ SATL ++ + L
Sbjct: 183 LTRPDGQ--------------------------------------RMLFSATLDRNVDSL 204
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+ LH P+ + T + +E + L + K + G + I+F ++
Sbjct: 205 VRRYLHDPVVHSVDPT-AGVVTSMEHHVLHVQEADKNATATEIAARDG--RVIMF---LD 258
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
+ H + L H + ++ G + Q R++TL F+EG + VLV+++ RG+ V+
Sbjct: 259 TKHAVDRLTKHLLKSGVRASALHGGKSQPQRTRTLTQFKEGHVTVLVATNVAARGIHVDD 318
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
++ VVN D PA K Y+HR GRTARAG+ G TL+ + + L+ A
Sbjct: 319 LDLVVNVDPPADHKDYLHRGGRTARAGESGSVVTLVLPHQRRDMDSLMSHA 369
>gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
Length = 408
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/428 (29%), Positives = 198/428 (46%), Gaps = 76/428 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLP 64
P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ P
Sbjct: 26 PTQIQA--EAIPQALEGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARVLILTP 83
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQE 123
TR+LA+QV D A+A L++ G G+ Y + D+L
Sbjct: 84 TRELAMQVADQARALAKNTSLNIFTITG-------------------GVQYQEHADILAT 124
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
Q DI+VATPGRLM++I A R F + +L++DE DR+L + PTV +L+
Sbjct: 125 TQ---DIVVATPGRLMEYIQAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS--- 174
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
NE R+ T L SA T+ GVE GF +A L DP A +D
Sbjct: 175 NECRWR-KQTMLFSA-----TLEGKGVE-GF-------------TADLLNDP---ADID- 210
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 303
E + +++ + ++ L L+ + + E+ IVF + E RL
Sbjct: 211 --------AEPSRRERKKITQWYYRADNMEHKLALLKDIINNQAERTIVFLKTRE---RL 259
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
L H ++ G Q R+ + FR+G + VL+++D RG+D+ V++VV
Sbjct: 260 ADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLLATDVAARGIDLPDVSHVV 319
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423
N+D P Y+HR GRTARAG+ G +++ + ++ + D I
Sbjct: 320 NFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVKED------IKERF 373
Query: 424 IESLRPVY 431
++ LRP +
Sbjct: 374 VKELRPQH 381
>gi|339243587|ref|XP_003377719.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
gi|316973448|gb|EFV57036.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
Length = 563
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 189/416 (45%), Gaps = 74/416 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI PVQ+ E L +D S TG+GKTL++A+PI+Q LS + AL
Sbjct: 123 MGIVEPSPVQLNCIPEI----LIGKDAIGCSKTGTGKTLAFAIPIIQRLSEDPY-GIYAL 177
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ P+R+LA Q+ + F + +GL + VG + ++ +E+ +P
Sbjct: 178 VLTPSRELAFQIGEQFQVLGKPLGLRTSIVVGGRDMIEQANEIANQPH------------ 225
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEH-LCYLVVDETDRLLREAYQAWLPTVLQL 179
IL+ATPGRL DHI + H + + V+DE DRLL Y L T+++
Sbjct: 226 ---------ILIATPGRLADHILSRSDENWFHKIKFFVLDEADRLLDGQYDLQLETIIEK 276
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+ + ++ SAT+T +L
Sbjct: 277 LPKERQT--------------------------------------LLFSATITDALCRLQ 298
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK----CIVFTS 295
+L + P F + + LE ++C +K Y+ +++ ++ ++F+
Sbjct: 299 ELSVKKPFFWQEQSCTVTV-DTLEQRYVLCPKSVKDAYVTYVVKLFTDKNPQSSVLIFSH 357
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
S L + F +L K+ + Q R + F+ ++++L+ +D +RG+D
Sbjct: 358 SCYECQALTLM---FADLGFKVGALHSMISQRERLSSFNLFKSNQLKILICTDVASRGLD 414
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
+ V+ V+N++ PA KTYIHR GR+ARAG+ GR T + + ++ + ++KA N
Sbjct: 415 LPFVDLVINHNIPAVAKTYIHRVGRSARAGRSGRAVTFITQYDIALLQA-IEKAIN 469
>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
Length = 454
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKNLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|60649461|gb|AAH91696.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
Length = 323
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 141/276 (51%), Gaps = 42/276 (15%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 13 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 68
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
TFL SAT+T+ KL + L +P+
Sbjct: 69 ---TFL-------------------------------FSATMTKKVQKLQRAALKNPVKC 94
Query: 250 TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 309
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL +
Sbjct: 95 AVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRN 153
Query: 310 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 369
G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D P
Sbjct: 154 LGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPT 210
Query: 370 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+ K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 211 HSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 246
>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
Length = 476
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 203/440 (46%), Gaps = 88/440 (20%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLAL 70
+ + I P L RD+ + TG+GKT S+ LP++ L+ RA R R+LV+ PTR+LA
Sbjct: 28 IQEGAIPPALEGRDVLGIAQTGTGKTASFVLPMITLLARGRARARMPRSLVLCPTRELAA 87
Query: 71 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 130
QV + F + L+ L +G G+ + +D L + VD+
Sbjct: 88 QVAENFDTYTKHLKLTKALLIG-------------------GVSFKEQDAL--IDRGVDV 126
Query: 131 LVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 127 LIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMG--------------------- 163
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
F+P +ER F P+ R + SAT+ + ++ L P +
Sbjct: 164 ----FIPD------------IERIFSLTPFTRQT-LFFSATMAPEIERITDTFLSAPARI 206
Query: 250 ------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC---IVFTSSVEST 300
T ET + ++ + E K L AL+ + G+ KC I+F +
Sbjct: 207 EVARQATASETIEQGVVMIKGGRRDREGSTKRKVLRALIDAEGD-KCTNAIIFCNRKTDV 265
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
L +G I G QSVR++TL+ FREG ++ LV+SD RG+DV V+
Sbjct: 266 DITAKSLKKYGYDAAAI---HGDLDQSVRTRTLEGFREGSLRFLVASDVAARGLDVPSVS 322
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDE--VKRFKKLLQKA----DNDS 413
+V N+D P++ + Y+HR GRT RAG+ G+ TL +DE ++ +KL+QK DN
Sbjct: 323 HVFNFDVPSHPEDYVHRIGRTGRAGREGKAITLCTARDEKALEAIEKLIQKEIPRLDN-- 380
Query: 414 CPIHSIPSSLIESLRPVYKS 433
P+ + P+ E +P KS
Sbjct: 381 -PVEAEPAE-AEDKKPEKKS 398
>gi|302869748|ref|YP_003838385.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302572607|gb|ADL48809.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
ATCC 27029]
Length = 417
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 190/414 (45%), Gaps = 80/414 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--A 59
GIS+ FP+Q A TI L RD+ TGSGKTL++ LP++ + R R R A
Sbjct: 25 GISAPFPIQAA----TIPDSLAGRDVLGRGRTGSGKTLAFGLPLLHRTAGRRARPGRPLA 80
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV++PTR+LA QV + A A +GL VG S+ + + L
Sbjct: 81 LVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAAL---------------- 124
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++ ++LVATPGRL D I+ RG L+ + V+DE D++ A +LP V +
Sbjct: 125 -----RAGAEVLVATPGRLHDLID--RGDARLDQVTITVLDEADQM---ADMGFLPQVTK 174
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ--DPN 236
L A G + + ++RG RLV+ L+ +T DP
Sbjct: 175 LLEQ--------------VAPGGQRMLFSATLDRGVD-----RLVRRFLTDPVTHSVDPG 215
Query: 237 KLAQLDL-HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
+ HH L L +++ KP L + E + IVF +
Sbjct: 216 TATVTAMTHHVLHL--------------------DAEDKPAALAHIAAR--EGRTIVFIA 253
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ R+ L G ++ G + Q R++ L+ FR G++ LV++D RG+
Sbjct: 254 TKHRADRVARQLLAKG---VRAAALHGGKSQPQRTRILEQFRTGQVTALVATDVAARGIH 310
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
V+G++ VVN D P K Y+HR GRTARAG+ G TL+ D+ + +L+ A
Sbjct: 311 VDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVARLMTTA 364
>gi|423139268|ref|ZP_17126906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051822|gb|EHY69713.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 453
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLAKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
Length = 403
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/407 (31%), Positives = 192/407 (47%), Gaps = 76/407 (18%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLP 64
P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ P
Sbjct: 19 PTQIQA--EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTP 76
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQE 123
TR+LA+QV D A+A L++ G G+ Y D+L +
Sbjct: 77 TRELAMQVADQARALAKHTKLNIFTITG-------------------GVQYQEHADILGK 117
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
Q DI+VATPGRLM++INA R F + +LV+DE DR+L + PTV +L+
Sbjct: 118 TQ---DIVVATPGRLMEYINAER-FDCRAIEWLVLDEADRMLDMGFG---PTVDRLS--- 167
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
NE R+ T L SA T+ GVE GF +A L +DP A +D
Sbjct: 168 NECRWR-KQTLLFSA-----TLEGKGVE-GF-------------TADLLKDP---ADID- 203
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 303
E + +++ + + L L+ + + E+ IVF + E RL
Sbjct: 204 --------AEPSRRERKKIAQWYHRADDMNHKLELLKKIITDQAERSIVFLKTRE---RL 252
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
L + +I G Q R+ + FR+G + VL+++D RG+D+ V++V+
Sbjct: 253 GELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAARGIDLPDVSHVI 312
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEVKRFKK 404
NYD P Y+HR GRTARAG+ G +L+ D V R+ K
Sbjct: 313 NYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMLDRVARYVK 359
>gi|170725457|ref|YP_001759483.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810804|gb|ACA85388.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 432
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 190/404 (47%), Gaps = 78/404 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC----L 57
G + PVQ Q+ I +D+ ++ TG+GKT ++ALPI+Q + ++
Sbjct: 20 GYQKMTPVQ----QQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMIDKPSETQRSNT 75
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
RAL++ PTR+LA S IAD I++ K ++ Y
Sbjct: 76 RALILTPTRELA------------------------SQIADNINDYSKHMQVSVLTIYGG 111
Query: 118 ---EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
E Q+++ VDI+VATPGRL++HI A L ++ ++V+DE DR+L + + +
Sbjct: 112 VKLETQAQKIKRGVDIIVATPGRLLEHIQAC-NLNLSNVDFMVLDEADRMLDMGFVSDIQ 170
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VLQ N+ S F + S+K + F DKP
Sbjct: 171 KVLQAV-----NKNSQKMLFSATFSSSVKKL-----ANDFLDKP---------------- 204
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
KL +D + T + Y + +R +L+ E L+ ++ ++FT
Sbjct: 205 --KLISVDKQNTTADTVSQVVYPVEQR-RKRELVSE----------LIGKKNWKQVLIFT 251
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ ++ +L LN G I G + Q R + L+ F+EGK++VLV+++ RG+
Sbjct: 252 ATRDAADKLVKELNLDG---IPSSVVHGEKAQGNRRRALREFKEGKVRVLVATEVAARGL 308
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
D++ + VVNYD P + Y+HR GRT RAG+ G +L+ ++E
Sbjct: 309 DIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREE 352
>gi|366160940|ref|ZP_09460802.1| ATP-dependent RNA helicase RhlE [Escherichia sp. TW09308]
gi|432371534|ref|ZP_19614587.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
gi|430898972|gb|ELC21078.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
Length = 454
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L +R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLISREPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + + LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDEIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|422782366|ref|ZP_16835151.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
Length = 454
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKNLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|422804761|ref|ZP_16853193.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
Length = 453
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|159489242|ref|XP_001702606.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280628|gb|EDP06385.1| predicted protein [Chlamydomonas reinhardtii]
Length = 602
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 197/412 (47%), Gaps = 66/412 (16%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA- 59
+G S P+Q A I L RD+C ++ TGSGKT ++ALP ++ L +R R L A
Sbjct: 167 LGYKSPTPIQAAC----IPLALAGRDICGSAVTGSGKTAAFALPFLERLLHRP-RGLAAT 221
Query: 60 --LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
LV+ PTR+LA+Q+ + +A ++V L VG S+ + L + P
Sbjct: 222 YVLVLTPTRELAVQIHSMIEKLAQFTDINVALIVGGLSLQVQAITLRQSP---------- 271
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+++VATPGRL+DH+ ++ LE L LV+DE DRLL ++ V
Sbjct: 272 -----------EVVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFRE---EVA 317
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
++ R+ R T L SA F D+ V+ +++ +L Q
Sbjct: 318 EVVRAAPRKR----QTMLFSAT--------------FNDQ-----VRDLVALSLKQPVRL 354
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE-KCIVFTSS 296
A P LT R K P + + +C L L A +S G+ + IVF S+
Sbjct: 355 AADAARAAPKLLTQEIVRLKGPAAAATKEAVC------LALCA--RSFGDRGRTIVFCST 406
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
HRL L G E G Q+ R ++L++FR G L+++D RG+D+
Sbjct: 407 KTKAHRLKILFGLAG--LPPAAELHGNMSQTARLESLESFRRGDTAFLLATDVAARGLDI 464
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+GV VVNYD P ++TY+HR GRTARAG G TL+ + K+L +K
Sbjct: 465 QGVEVVVNYDAPPKLETYLHRIGRTARAGAAGVAVTLVEDGDRGLLKELGKK 516
>gi|432849252|ref|ZP_20080474.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
gi|431401252|gb|ELG84596.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
Length = 454
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L +R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLISRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|357618886|gb|EHJ71689.1| hypothetical protein KGM_12880 [Danaus plexippus]
Length = 533
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 179/411 (43%), Gaps = 74/411 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSP-TGSGKTLSYALPIVQTLSNRAVRCLRA 59
+GI + P+Q P + CI + TGSGKT ++ALPI+Q L+ A
Sbjct: 25 LGIKTPTPIQKGCI-----PNILSGQDCIGAAKTGSGKTFAFALPILQNLAEDPYGIF-A 78
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PT +LA Q+ D F + + L V + G S +E +L KRP
Sbjct: 79 LVLTPTHELAYQIADQFLILGQPLKLRVCIVTGGSDQLEESLKLAKRPH----------- 127
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
I+VA PGRL DHI+ F+L+ + YLV+DE DRL E++ L T+ +
Sbjct: 128 ----------IVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFTGDLETIFEA 177
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+N ++ SAT+T+D +
Sbjct: 178 LPQKRQN--------------------------------------LLFSATITEDVKESK 199
Query: 240 QLDLHHPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALLQSLGE----EKCIVFT 294
L L+ T +T L L+ ++C + + +YLV L+ E IVFT
Sbjct: 200 VLSLNKDNLSTWCDTDTTLTVSTLDQRYVVCPAYARDVYLVQTLRKYREGAPSSHVIVFT 259
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ + L +L G + + G RQ R L FR L++++ RG+
Sbjct: 260 DTKKECQVLSMMLADIGMDNVCL---HGFMRQKERVSALAQFRSNLKCTLIATNVAARGL 316
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
D+ V+ VVN+ P K YIHR GRTARAG+ G +++ ++ R ++
Sbjct: 317 DIPSVDLVVNHKLPLEPKEYIHRVGRTARAGRSGMAISIITPYDILRLGEI 367
>gi|424817011|ref|ZP_18242162.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
Length = 453
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKNLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
gi|386623197|ref|YP_006142925.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
gi|349736935|gb|AEQ11641.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
Length = 453
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKNLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase [Roseiflexus castenholzii DSM 13941]
gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM
13941]
Length = 450
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/451 (27%), Positives = 193/451 (42%), Gaps = 102/451 (22%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q ++ I L RD+ + TG+GKT ++ LPI+ L +RA+
Sbjct: 19 LGYHTPTPIQ----EQVIPHALAGRDVIGIAQTGTGKTAAFVLPILHHLMRGPRGRVRAM 74
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
+V PTR+LA Q++ V A+ G I+ L G+ Y +
Sbjct: 75 IVTPTRELAEQIQGVIEALGKHTG-------------------IRSVTLYGGVGYQGQ-- 113
Query: 121 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q L+ V+I V PGRL+DH+ RG TL+HL L +DE D++ +LP V ++
Sbjct: 114 IQRLRRGVEIAVVCPGRLLDHLE--RGTLTLDHLEVLTLDEADQMFD---MGFLPDVRRI 168
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+R VER M+ SAT+ LA
Sbjct: 169 -------------------------LRLAPVER----------QTMLFSATMPDAVRSLA 193
Query: 240 QLDLHHPLFLTTGETR---------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 290
+ L PL + G + Y +PE LK L+ LL+ E
Sbjct: 194 REALRDPLTVQIGRSAPVATVTHAIYPVPE-----------HLKTSLLIELLERTDAESV 242
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
++FT + RL L G + G Q+ R L FR G+ Q+L ++D
Sbjct: 243 LIFTRTKHRAQRLGDTLARLG---YRATSLHGNLSQNRRQAALDGFRSGRYQILTATDIA 299
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQ 407
RG+DV +++V+NYD P + Y HR GRT RA + G FTL+ + + V+ ++L+
Sbjct: 300 ARGIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDTAMVRAIERLIG 359
Query: 408 KA----------DNDSCPIHSIPSSLIESLR 428
+ N + P+H S + S R
Sbjct: 360 EPLKREIVPGFDYNAAAPVHETRSDAVHSNR 390
>gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
146-1]
gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
Length = 446
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|432601332|ref|ZP_19837581.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
gi|431143165|gb|ELE44903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
Length = 453
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase, partial [Escherichia coli MS 116-1]
gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
Length = 433
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|422970694|ref|ZP_16974206.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
gi|371600132|gb|EHN88909.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPVKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|432542177|ref|ZP_19779033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|432547647|ref|ZP_19784434.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|432620931|ref|ZP_19856972.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|432814385|ref|ZP_20048175.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
gi|431076431|gb|ELD83926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|431083583|gb|ELD89755.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|431161397|gb|ELE61868.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|431366608|gb|ELG53105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
Length = 411
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 127/426 (29%), Positives = 199/426 (46%), Gaps = 76/426 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLP 64
P Q+ E I L RD+ ++PTG+GKT ++ALP +Q L + R R L++ P
Sbjct: 26 PTQIQA--EAIPQALDGRDVLASAPTGTGKTAAFALPALQFLQDFPRRKPGPARVLILTP 83
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQE 123
TR+LA+QV D A+A L++ G G+ Y + D+L
Sbjct: 84 TRELAMQVADQARALAKHTNLNIFTITG-------------------GVQYQEHADILAT 124
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
Q DI+VATPGRLM++I A R F + +L++DE DR+L + PTV +L+
Sbjct: 125 TQ---DIVVATPGRLMEYIEAER-FDCRAIEWLILDEADRMLDMGFG---PTVDRLS--- 174
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
+E R+ T L SA T+ GVE GF +A L +DP A++D
Sbjct: 175 SECRWR-KQTLLFSA-----TLEGKGVE-GF-------------TADLLKDP---AEID- 210
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 303
E + +++ + + L L+ + + E+ IVF + E RL
Sbjct: 211 --------AEPSRRERKKIAQWYHRADDMTHKLELLKKILTEQAERSIVFLKTRE---RL 259
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
L + +I G Q R+ + FR+G + VL+++D RG+D+ V++V+
Sbjct: 260 AELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAARGIDLPDVSHVI 319
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423
NYD P Y+HR GRTARAG+ G +L+ + ++ + D I
Sbjct: 320 NYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMIDRVARYVKED------IKERF 373
Query: 424 IESLRP 429
I+ +RP
Sbjct: 374 IKEMRP 379
>gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|450186646|ref|ZP_21889564.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|449324165|gb|EMD14102.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
Length = 453
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073]
gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222155523|ref|YP_002555662.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|386628337|ref|YP_006148057.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|386633257|ref|YP_006152976.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|386638150|ref|YP_006104948.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|387616054|ref|YP_006119076.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|416335171|ref|ZP_11671882.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|417661322|ref|ZP_12310903.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|419699658|ref|ZP_14227271.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|422364701|ref|ZP_16445212.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|422379081|ref|ZP_16459284.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|432380422|ref|ZP_19623377.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|432386249|ref|ZP_19629145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|432396679|ref|ZP_19639464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|432405614|ref|ZP_19648334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|432410799|ref|ZP_19653480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|432430847|ref|ZP_19673290.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|432435375|ref|ZP_19677774.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|432455662|ref|ZP_19697861.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|432470167|ref|ZP_19712219.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|432494600|ref|ZP_19736416.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|432503439|ref|ZP_19745174.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|432512992|ref|ZP_19750227.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|432522884|ref|ZP_19760021.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|432567630|ref|ZP_19804155.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|432591850|ref|ZP_19828177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|432606617|ref|ZP_19842810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|432610468|ref|ZP_19846639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|432645226|ref|ZP_19881025.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|432650259|ref|ZP_19886019.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|432655024|ref|ZP_19890736.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|432679216|ref|ZP_19914615.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|432698104|ref|ZP_19933270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|432712457|ref|ZP_19947506.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|432722309|ref|ZP_19957232.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|432726851|ref|ZP_19961732.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|432731462|ref|ZP_19966298.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|432740537|ref|ZP_19975258.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|432744724|ref|ZP_19979423.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|432758541|ref|ZP_19993042.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|432782638|ref|ZP_20016822.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|432843102|ref|ZP_20076437.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|432893524|ref|ZP_20105536.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|432903336|ref|ZP_20112802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|432942848|ref|ZP_20140002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|432970909|ref|ZP_20159787.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|432977456|ref|ZP_20166279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|432984426|ref|ZP_20173163.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|432989850|ref|ZP_20178516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|432994527|ref|ZP_20183141.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|432998946|ref|ZP_20187484.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|433037791|ref|ZP_20225403.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|433057090|ref|ZP_20244173.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|433076958|ref|ZP_20263520.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|433081679|ref|ZP_20268153.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|433086407|ref|ZP_20272802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|433100308|ref|ZP_20286415.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|433110072|ref|ZP_20295946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|433114682|ref|ZP_20300496.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|433124341|ref|ZP_20309928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|433138401|ref|ZP_20323685.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|433143374|ref|ZP_20328540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|433148188|ref|ZP_20333252.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|433187583|ref|ZP_20371700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|433197356|ref|ZP_20381279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|433206916|ref|ZP_20390611.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|433211664|ref|ZP_20395277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|442606347|ref|ZP_21021147.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073]
gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|355419236|gb|AER83433.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|355424156|gb|AER88352.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|380349203|gb|EIA37478.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|430909170|gb|ELC30555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|430910737|gb|ELC32037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|430916999|gb|ELC38047.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|430931768|gb|ELC52202.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|430937297|gb|ELC57552.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|430955287|gb|ELC74070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|430965703|gb|ELC83112.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|430984389|gb|ELD01012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|430999345|gb|ELD15427.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|431027205|gb|ELD40268.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|431041485|gb|ELD51985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|431044031|gb|ELD54311.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|431054194|gb|ELD63775.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|431102578|gb|ELE07392.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|431131766|gb|ELE33782.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|431140069|gb|ELE41846.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|431150809|gb|ELE51851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|431182457|gb|ELE82274.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|431192815|gb|ELE92159.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|431193934|gb|ELE93204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|431224276|gb|ELF21503.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|431246244|gb|ELF40510.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|431258590|gb|ELF51353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|431267386|gb|ELF58903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|431274639|gb|ELF65684.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|431277717|gb|ELF68721.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|431285128|gb|ELF75964.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|431294200|gb|ELF84380.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|431311130|gb|ELF99308.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|431331037|gb|ELG18300.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|431396873|gb|ELG80335.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|431424504|gb|ELH06600.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|431435780|gb|ELH17388.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|431452735|gb|ELH33146.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|431480967|gb|ELH60681.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|431486046|gb|ELH65703.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|431496725|gb|ELH76303.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|431505005|gb|ELH83628.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|431508740|gb|ELH87011.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|431513286|gb|ELH91369.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|431553961|gb|ELI27843.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|431573658|gb|ELI46455.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|431600236|gb|ELI69908.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|431605514|gb|ELI74903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|431609064|gb|ELI78397.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|431621765|gb|ELI90555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|431630708|gb|ELI99036.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|431636392|gb|ELJ04523.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|431649148|gb|ELJ16507.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|431664579|gb|ELJ31313.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|431665476|gb|ELJ32194.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|431676301|gb|ELJ42421.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|431708583|gb|ELJ73091.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|431725002|gb|ELJ88915.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|431732132|gb|ELJ95588.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|431735862|gb|ELJ99206.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|441712423|emb|CCQ07124.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
Length = 453
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|432390781|ref|ZP_19633639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|432792011|ref|ZP_20026101.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|432797974|ref|ZP_20031999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
gi|430921399|gb|ELC42223.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|431341593|gb|ELG28599.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|431344996|gb|ELG31928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|425287375|ref|ZP_18678299.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
gi|408218139|gb|EKI42372.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417307244|ref|ZP_12094116.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
gi|338771115|gb|EGP25863.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
Length = 453
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|365848675|ref|ZP_09389147.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
gi|364570255|gb|EHM47873.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
Length = 450
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L +R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHLISREPHAKGRRPIRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNA---LKLDSIEVLVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLAKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L L+ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSHLIGKDDWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKK 366
>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
Length = 527
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 192/418 (45%), Gaps = 70/418 (16%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G S P+Q I P L RD+ + TG+GKT S+ LP++ L+ RA R R+
Sbjct: 21 GYESPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F + L+ L +G G+ + +D
Sbjct: 77 LVLCPTRELAAQVAENFDTYTKHLKLTKALLIG-------------------GVSFKEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH RG L + +VVDE DR+L + + +
Sbjct: 118 QL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LT + F A T P I R + F P V SA+ T
Sbjct: 174 LTPFTRQTLFFSA-TMAPE-------IER--ITNTFLSAPERIEVARQASASET------ 217
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE--KCIVFTSS 296
++ H LF + + R E+ K L AL+ + GE+ I+F +
Sbjct: 218 --IEQHVVLFKASRKDR--------------EASEKRTALRALINAEGEKLTNGIIFCNR 261
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ L +G G QS R+KTL FREGK+++LV+SD RG+DV
Sbjct: 262 KSDVDIVAKSLKKYG---FDAAPIHGDLDQSQRTKTLDGFREGKLRILVASDVAARGLDV 318
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDE--VKRFKKLLQKADN 411
V++V N+D P + + Y+HR GRT RAG+ G+ T+ +DE + + LLQK N
Sbjct: 319 PSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICSGRDEKALAAVESLLQKEIN 376
>gi|432717836|ref|ZP_19952831.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
gi|431265515|gb|ELF57079.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417288603|ref|ZP_12075888.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
gi|386247395|gb|EII93568.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
Length = 453
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417137678|ref|ZP_11981468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
gi|386159242|gb|EIH15575.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
Length = 453
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|260854088|ref|YP_003227979.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
11368]
gi|415785215|ref|ZP_11492829.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|417295208|ref|ZP_12082464.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|419207940|ref|ZP_13751063.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|419214487|ref|ZP_13757510.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|419253551|ref|ZP_13796090.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|419259612|ref|ZP_13802056.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|419265751|ref|ZP_13808132.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|419271293|ref|ZP_13813617.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|419879319|ref|ZP_14400758.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|419886119|ref|ZP_14406771.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|419903986|ref|ZP_14422997.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|419910328|ref|ZP_14428852.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|420112198|ref|ZP_14622003.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|420117106|ref|ZP_14626474.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|420123029|ref|ZP_14631931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|420129457|ref|ZP_14637989.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|420135205|ref|ZP_14643297.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|424746487|ref|ZP_18174725.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424762635|ref|ZP_18190136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425377700|ref|ZP_18762068.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|378061114|gb|EHW23300.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|378067249|gb|EHW29374.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|378105091|gb|EHW66738.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|378114392|gb|EHW75948.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|378117330|gb|EHW78846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|378120824|gb|EHW82286.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|386261571|gb|EIJ17036.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|388332252|gb|EIK98931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|388347103|gb|EIL12797.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|388368577|gb|EIL32204.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|388371735|gb|EIL35193.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|394382613|gb|EJE60242.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|394397074|gb|EJE73380.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|394402533|gb|EJE78247.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|394417988|gb|EJE91696.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|394420435|gb|EJE93966.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|408308877|gb|EKJ26102.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|421940874|gb|EKT98310.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421948130|gb|EKU05171.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A]
gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|415803124|ref|ZP_11500296.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|415827804|ref|ZP_11514573.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|416345038|ref|ZP_11678681.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|417144495|ref|ZP_11986301.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|417161484|ref|ZP_11997720.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|417177330|ref|ZP_12006811.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|417180033|ref|ZP_12007741.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|417223820|ref|ZP_12027111.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|417242638|ref|ZP_12037855.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|417254717|ref|ZP_12046468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|417267555|ref|ZP_12054916.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|417601131|ref|ZP_12251713.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|417606902|ref|ZP_12257426.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|417622131|ref|ZP_12272456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|417665935|ref|ZP_12315497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|419225574|ref|ZP_13768459.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|419236763|ref|ZP_13779507.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|419242295|ref|ZP_13784942.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|419247811|ref|ZP_13790418.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|419277008|ref|ZP_13819269.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|419282779|ref|ZP_13824991.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|419288330|ref|ZP_13830440.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|419293682|ref|ZP_13835737.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|419299089|ref|ZP_13841102.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|419305383|ref|ZP_13847293.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|419310421|ref|ZP_13852292.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|419315707|ref|ZP_13857531.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|419321653|ref|ZP_13863385.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|419327782|ref|ZP_13869410.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|419333303|ref|ZP_13874859.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|419338624|ref|ZP_13880109.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|419374460|ref|ZP_13915511.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|419379737|ref|ZP_13920712.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|419384945|ref|ZP_13925844.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|419804719|ref|ZP_14329872.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|419870728|ref|ZP_14392820.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|419928780|ref|ZP_14446487.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|419952234|ref|ZP_14468408.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|420390263|ref|ZP_14889531.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|422775387|ref|ZP_16829043.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|423708718|ref|ZP_17683096.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|425423250|ref|ZP_18804418.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|432375905|ref|ZP_19618913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|432480171|ref|ZP_19722133.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|432812897|ref|ZP_20046742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|432830770|ref|ZP_20064353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|432833878|ref|ZP_20067420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|432966894|ref|ZP_20155810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
E24377A]
gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|345353137|gb|EGW85373.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|345364307|gb|EGW96433.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|345385199|gb|EGX15046.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|378080476|gb|EHW42438.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|378088482|gb|EHW50335.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|378093646|gb|EHW55450.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|378099976|gb|EHW61673.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|378132177|gb|EHW93529.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|378135208|gb|EHW96520.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|378138246|gb|EHW99504.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|378145181|gb|EHX06347.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|378151862|gb|EHX12964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|378155043|gb|EHX16103.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|378160136|gb|EHX21133.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|378173088|gb|EHX33932.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|378173799|gb|EHX34632.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|378175241|gb|EHX36059.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|378189533|gb|EHX50125.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|378193147|gb|EHX53688.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|378224523|gb|EHX84725.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|378232924|gb|EHX93018.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|378236537|gb|EHX96583.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|384472327|gb|EIE56385.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|385707439|gb|EIG44470.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|386164378|gb|EIH26164.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|386174020|gb|EIH46021.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|386175879|gb|EIH53361.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|386185388|gb|EIH68114.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|386198868|gb|EIH97859.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|386211626|gb|EII22082.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|386214999|gb|EII31496.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|386229913|gb|EII57268.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|388338976|gb|EIL05370.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|388405146|gb|EIL65583.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|388412943|gb|EIL72969.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|391314587|gb|EIQ72137.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|397786486|gb|EJK97322.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|408343465|gb|EKJ57866.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|430900533|gb|ELC22551.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|431009653|gb|ELD24267.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|431356103|gb|ELG42794.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|431379611|gb|ELG64540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|431386759|gb|ELG70712.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|431472866|gb|ELH52700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|422765321|ref|ZP_16819048.1| DEAD/DEAH box helicase [Escherichia coli E1520]
gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSNDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
Length = 447
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKNLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSYMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417595796|ref|ZP_12246456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
gi|345358931|gb|EGW91111.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
Length = 454
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|387606349|ref|YP_006095205.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
Length = 454
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKNLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVSR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|424075736|ref|ZP_17813076.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA505]
gi|424094910|ref|ZP_17830656.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1985]
gi|424101330|ref|ZP_17836476.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1990]
gi|424132527|ref|ZP_17865318.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA10]
gi|424139068|ref|ZP_17871353.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA14]
gi|424454056|ref|ZP_17905582.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA33]
gi|424466839|ref|ZP_17917018.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA41]
gi|424567552|ref|ZP_18008456.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4448]
gi|425142383|ref|ZP_18542670.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0869]
gi|425184632|ref|ZP_18582246.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1997]
gi|425309735|ref|ZP_18699189.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1735]
gi|425321723|ref|ZP_18710381.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1737]
gi|425346380|ref|ZP_18733171.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1849]
gi|428945401|ref|ZP_19018016.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1467]
gi|429024709|ref|ZP_19091099.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0427]
gi|444968033|ref|ZP_21285499.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1793]
gi|390652270|gb|EIN30494.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA505]
gi|390672006|gb|EIN48371.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1990]
gi|390672509|gb|EIN48807.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1985]
gi|390707718|gb|EIN81057.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA10]
gi|390710520|gb|EIN83538.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA14]
gi|390754145|gb|EIO23767.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA33]
gi|390775273|gb|EIO43340.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA41]
gi|390913428|gb|EIP72014.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4448]
gi|408115758|gb|EKH47123.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1997]
gi|408237515|gb|EKI60370.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1735]
gi|408252100|gb|EKI73797.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1737]
gi|408278182|gb|EKI97944.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1849]
gi|408603387|gb|EKK77028.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0869]
gi|427215678|gb|EKV84846.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1467]
gi|427291116|gb|EKW54560.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0427]
gi|444585228|gb|ELV60806.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1793]
Length = 450
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 81
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 82 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 120
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 121 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 157
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 158 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 199
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 200 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 258
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 259 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 315
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 316 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 361
>gi|390605167|gb|EIN14558.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 808
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 182/405 (44%), Gaps = 87/405 (21%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAP 81
+D+ + TGSGKTL++ +P+++ L R L AL++ PTR+LA+Q+ +V +I
Sbjct: 93 KDVLGAARTGSGKTLAFLVPVLELLYRRKWGPQDGLGALIISPTRELAVQIFEVLRSIGG 152
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G ++ DE L + ++ILVATPGRL+ H
Sbjct: 153 YHNFSAGLVIGGKNLKDERDRLGR----------------------MNILVATPGRLLQH 190
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T GF ++L LV+DE DR+L + L +L + LP +
Sbjct: 191 MDQTIGFDCDNLQILVLDEADRILDMGFSRTLSALL---------------SHLPKGRQT 235
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT---GETRYK- 257
L + SAT TQ LA+L L +P+F++T E K
Sbjct: 236 L-----------------------LFSATQTQSVQDLARLSLQNPVFVSTQHASEINTKD 272
Query: 258 -----------LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST----HR 302
+P+ LE + ++CE K L + ++S K +VF SS +
Sbjct: 273 PSKISLTSTDFIPKTLEQHYVVCELDQKLNLLFSFIKSHLTSKTLVFLSSCKQVRFVFET 332
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
C L H G + + G Q+Q R + F K VL ++D +RG+D GV+ V
Sbjct: 333 FCKL--HPG---VPLMHLHGKQKQQTRIDIYQKFIASKHSVLFATDIASRGLDFPGVDWV 387
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
V D P TY+HR GRTAR G+ +L E + +LL+
Sbjct: 388 VQVDAPEDADTYVHRVGRTARYESEGKALLVLCPSEEEGMLRLLE 432
>gi|415771440|ref|ZP_11485299.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
gi|417617233|ref|ZP_12267663.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli G58-1]
gi|419400716|ref|ZP_13941447.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15C]
gi|425114155|ref|ZP_18515976.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0566]
gi|425282199|ref|ZP_18673305.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW00353]
gi|315619798|gb|EFV00317.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
gi|345380405|gb|EGX12304.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli G58-1]
gi|378251021|gb|EHY10922.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15C]
gi|408205467|gb|EKI30348.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW00353]
gi|408571867|gb|EKK47794.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0566]
Length = 449
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 81
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 82 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 120
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 121 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 157
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 158 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 199
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 200 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 258
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 259 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 315
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 316 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 361
>gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
196-1]
gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
Length = 438
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|422368931|ref|ZP_16449335.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 16-3]
gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3]
Length = 446
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|386618245|ref|YP_006137825.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|387828776|ref|YP_003348713.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|432420873|ref|ZP_19663428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|432499009|ref|ZP_19740785.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|432557779|ref|ZP_19794468.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|432693549|ref|ZP_19928760.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|432709596|ref|ZP_19944661.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|432918019|ref|ZP_20122424.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|432925309|ref|ZP_20127338.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|432980270|ref|ZP_20169048.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|433095692|ref|ZP_20281903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|433104902|ref|ZP_20290920.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|333968746|gb|AEG35551.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|430946490|gb|ELC66413.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|431031680|gb|ELD44418.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|431093857|gb|ELD99513.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|431236215|gb|ELF31428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|431251298|gb|ELF45315.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|431446200|gb|ELH26949.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|431448030|gb|ELH28748.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|431493165|gb|ELH72759.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|431618950|gb|ELI87878.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|431633658|gb|ELJ01921.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
Length = 453
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|422377585|ref|ZP_16457824.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 60-1]
gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1]
Length = 438
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|422358967|ref|ZP_16439616.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
110-3]
gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3]
Length = 439
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|425299062|ref|ZP_18689104.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 07798]
gi|408221005|gb|EKI44988.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 07798]
Length = 448
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 81
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 82 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 120
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 121 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 157
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 158 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 199
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 200 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 258
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 259 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 315
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 316 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 361
>gi|423119382|ref|ZP_17107066.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
gi|376398561|gb|EHT11185.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
Length = 466
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHLIQKEPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+S
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRSG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA +L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAV---SLDKVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE K ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDIERLLKK 366
>gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
Length = 465
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 192/409 (46%), Gaps = 82/409 (20%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RA-VRCLRALV 61
S+ + + + TI L +RD+ + TG+GKT S+ LP++ L RA R R L+
Sbjct: 23 SAGYTIPTPIQSGTIPHILQKRDILGIAQTGTGKTASFVLPMLTLLEKGRARARIPRTLI 82
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA QV++ F L+V L +G G+ ++ +D
Sbjct: 83 LEPTRELATQVQENFDKYGVNHNLNVALLIG-------------------GVSFEQQD-- 121
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
++L+ D+L+ATPGRL+DH + L + LV+DE DR+L
Sbjct: 122 RKLERGADVLIATPGRLLDHFEHGK-LLLLGIEILVIDEADRMLDMG------------- 167
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
F+P+ +ER K P+ R + SAT+ + KL +
Sbjct: 168 ------------FIPN------------IERICKLTPFTRQT-LFFSATMAPEITKLTKQ 202
Query: 242 DLHHPLFL---TTGETRYKLPERLESYKLICESKLKPLYLVALLQSL----GEE--KCIV 292
LH P+++ T K+ +RL +S KP A+L+ L G+E I+
Sbjct: 203 FLHSPVYIEITKASSTAKKITQRL------VKSGSKPWDKRAILRELIHKEGDELKNAII 256
Query: 293 FTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
F + + L +L+ H + G Q R+ TL F++ K+ +LV+SD +
Sbjct: 257 FCNRKKDISELVRSLIKH----NFSVGTLHGDMDQHSRTSTLANFKDNKLTLLVASDVAS 312
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
RG+D+ V++V NYD P + + YIHR GRT RA + G+ FT++ K + K
Sbjct: 313 RGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEK 361
>gi|336373626|gb|EGO01964.1| hypothetical protein SERLA73DRAFT_49383 [Serpula lacrymans var.
lacrymans S7.3]
Length = 474
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 181/406 (44%), Gaps = 54/406 (13%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
M I + +QVA I P L RD N+ TGSGKT+++ALPI+Q LS AL
Sbjct: 59 MSIRTPTEIQVAC----IPPLLSGRDCIGNAKTGSGKTIAFALPILQKLSEDPYGIF-AL 113
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ D FA + + + + VG + + EL RP
Sbjct: 114 VLTPTRELAFQISDQFAVLGAGLSIRTAVIVGGMDMMTQALELDNRPH------------ 161
Query: 121 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++VATPGR++DH+ ++ G ++L + +LV+DE DRLL + L + +
Sbjct: 162 ---------VVVATPGRIVDHLRSSSGEWSLSRIKFLVLDEADRLLTPTFSPELSYLFDV 212
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+ + A T PS + R G K KP+ + + +T + N
Sbjct: 213 LPKERQTCLFTA-TLTPSIDKLAEVPPRPG-----KQKPFIHRMNANIETVVTLNQN--- 263
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L R Y L+C P +L Q + I+F + +
Sbjct: 264 -------FVLVPSHVRETY-----LYHLLCN---PPELAASLRQLVQPPPTIIFCTKPRT 308
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L +LL L I+ Q R +L FR I VLVS+D RG+D+E V
Sbjct: 309 AAYLTSLLK---TLSIRSTALHSRLTQRERLTSLSLFRSSVIPVLVSTDVGARGLDIEDV 365
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
V+N+D P + Y HR GRTARAG+ G + + + + +R K+
Sbjct: 366 AMVINWDLPNEPEEYTHRVGRTARAGKAGIAISFVTEKDEERVLKI 411
>gi|379718419|ref|YP_005310550.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|378567091|gb|AFC27401.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
Length = 578
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 185/393 (47%), Gaps = 71/393 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRAL 60
G + P+Q +E I L D+ + TG+GKTL++ LPI++++ NR+ ++AL
Sbjct: 23 GYNEPTPIQ----REAIPSVLGGHDVIAQAQTGTGKTLAFVLPILESIDPNRS--HVQAL 76
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
+V PTR+LA+Q+ + A AP G+ V A G D E
Sbjct: 77 IVTPTRELAIQITEEVARWAPLKGIRVLSAYG---------------------GQDVERQ 115
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+++L+ A+ I+VATPGRL+DH+ L L LV+DE D++L + +LP V+++
Sbjct: 116 IRKLEGAIHIIVATPGRLLDHLR-RETVQLFKLSTLVLDEADQML---HMGFLPEVVEII 171
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
+ R + ++ SAT+ + +LA+
Sbjct: 172 SATPTRRQT-----------------------------------LLFSATMPERVRQLAK 196
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
+ P+ + R L E +E + + K L AL +++ E+ + +
Sbjct: 197 EYMKPPVEIEVKAKRVTLDE-IEQIVVQTTDRGK---LDALCKAMEEDPPFLGMIFCRTK 252
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
R L + E + E G Q+ R + +K FR+ KIQ LV++D RG+DVEG+
Sbjct: 253 LRATKLRDELDERGYAVDELHGDLTQAKREQVMKRFRDAKIQFLVATDIAARGLDVEGIT 312
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
+V NYD P ++YIHR GRT RAG G+ T
Sbjct: 313 HVYNYDIPHDAESYIHRIGRTGRAGMTGKAITF 345
>gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
Length = 453
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|419911645|ref|ZP_14430115.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
gi|388393221|gb|EIL54610.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
Length = 452
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|419344419|ref|ZP_13885801.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|419348857|ref|ZP_13890210.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|419353846|ref|ZP_13895128.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
gi|419359241|ref|ZP_13900466.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378188847|gb|EHX49441.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|378204519|gb|EHX64935.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|378206700|gb|EHX67102.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378207818|gb|EHX68206.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
Length = 445
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
175-1]
gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
Length = 439
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|415836765|ref|ZP_11519063.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|417282857|ref|ZP_12070155.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|425276656|ref|ZP_18667983.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|386244062|gb|EII85794.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|408206357|gb|EKI31167.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
Length = 453
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSYMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|432945988|ref|ZP_20141726.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|433042299|ref|ZP_20229823.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
gi|431462321|gb|ELH42535.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|431559502|gb|ELI33055.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
Length = 454
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|432873837|ref|ZP_20093105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
gi|431404432|gb|ELG87683.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
Length = 454
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|425304306|ref|ZP_18694089.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
gi|408231316|gb|EKI54593.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
Length = 454
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|419917866|ref|ZP_14436087.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|388392900|gb|EIL54301.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
Length = 452
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|88857449|ref|ZP_01132092.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family protein [Pseudoalteromonas
tunicata D2]
gi|88820646|gb|EAR30458.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family protein [Pseudoalteromonas
tunicata D2]
Length = 435
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 191/402 (47%), Gaps = 74/402 (18%)
Query: 2 GISSLFPVQ-VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN----RAVRC 56
G + L PVQ +A+ G D+ N+ TG+GKT ++ALPI+Q L + R
Sbjct: 20 GYTELSPVQRLAIPHVRRG-----HDVLANAQTGTGKTAAFALPILQKLIDTPTPRVASN 74
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
+ALV+ PTR+LA Q+ + F + +SV G G+ +
Sbjct: 75 AKALVLAPTRELAEQIANSFERYGKYLDISVAAIFG-------------------GVSHK 115
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
+ + +L++ DI+VATPGRL++HI +L ++ +LV+DE DR+L ++ +
Sbjct: 116 GQAI--KLKAGADIIVATPGRLLEHIQMC-NVSLSNVSFLVLDEADRMLD---MGFINDI 169
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
L + N+ R T L SA YP +K SA++ + P
Sbjct: 170 KMLMAAVNDER----QTLLFSA-------------------TYPSSMKQ-FSASVLKQP- 204
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
K+ Q + T Y + ER ++ +L+ E L+ + +VF +
Sbjct: 205 KIVQATKDNSTAETVQHVVYPVEERRKN-ELLSE----------LIGRKNWHQVLVFVNM 253
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
E+ + LN FG I G + Q R + L+ F+EGK++VLV+++ RG+D+
Sbjct: 254 KETASSVVEELNQFG---ISAAVCHGDKTQGARRRALREFKEGKVRVLVATEVAARGLDI 310
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G+ V+N D P + Y+HR GRT RAG +G+ + + ++E
Sbjct: 311 VGLERVINVDLPFLAEDYVHRIGRTGRAGNIGQAVSFVSREE 352
>gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS]
gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS]
Length = 454
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIKVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88]
gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a]
gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|386598515|ref|YP_006100021.1| ATP-dependent RNA helicase [Escherichia coli IHE3034]
gi|386605309|ref|YP_006111609.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|417083288|ref|ZP_11951383.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|419945239|ref|ZP_14461691.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|422753403|ref|ZP_16807230.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|422839261|ref|ZP_16887233.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|432357084|ref|ZP_19600329.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|432361555|ref|ZP_19604739.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|432440118|ref|ZP_19682471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|432445289|ref|ZP_19687595.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|432464759|ref|ZP_19706865.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|432572730|ref|ZP_19809221.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|432582855|ref|ZP_19819265.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|432587037|ref|ZP_19823407.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|432596680|ref|ZP_19832961.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|432753536|ref|ZP_19988102.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|432777676|ref|ZP_20011926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|432786464|ref|ZP_20020629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|432801077|ref|ZP_20035062.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|432820056|ref|ZP_20053769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|432826272|ref|ZP_20059927.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|432897685|ref|ZP_20108516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|433004263|ref|ZP_20192701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|433012971|ref|ZP_20201347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|433022657|ref|ZP_20210669.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|433027779|ref|ZP_20215652.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|433071845|ref|ZP_20258540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|433119347|ref|ZP_20305054.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|433152888|ref|ZP_20337854.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|433167597|ref|ZP_20352264.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|433182333|ref|ZP_20366629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|433323476|ref|ZP_20400825.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88]
gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a]
gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
IHE3034]
gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|355352704|gb|EHG01878.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|371609793|gb|EHN98326.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|388416387|gb|EIL76278.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|430879262|gb|ELC02612.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|430889445|gb|ELC12106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|430969031|gb|ELC86193.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|430975131|gb|ELC92033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|430996565|gb|ELD12841.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|431111068|gb|ELE14985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|431119871|gb|ELE22870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|431123204|gb|ELE25946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|431132465|gb|ELE34464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|431304772|gb|ELF93296.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|431329865|gb|ELG17150.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|431341100|gb|ELG28114.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|431350312|gb|ELG37124.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|431370312|gb|ELG56113.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|431374056|gb|ELG59651.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|431428412|gb|ELH10353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|431517584|gb|ELH95106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|431534619|gb|ELI11099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|431539394|gb|ELI15145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|431545406|gb|ELI20061.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|431592521|gb|ELI63097.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|431648209|gb|ELJ15608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|431677981|gb|ELJ43993.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|431693120|gb|ELJ58537.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|431711126|gb|ELJ75485.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|432348179|gb|ELL42631.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
Length = 453
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|384487839|gb|EIE80019.1| hypothetical protein RO3G_04724 [Rhizopus delemar RA 99-880]
Length = 425
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 190/426 (44%), Gaps = 71/426 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P + +D+ + TGSGKT ++A+PI+Q LS ALV+ PTR+LA Q+
Sbjct: 56 IQRACIQPIMDGKDVIGGAKTGSGKTAAFAIPILQKLSQDPYGVF-ALVLTPTRELAYQI 114
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ F + +G+ + VG + + EL KRP I++
Sbjct: 115 AEQFRVLGKGIGVKECVVVGGMDMMTQALELAKRPH---------------------III 153
Query: 133 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
ATPGRL DHI ++ G L +LV+DE DR+L + L T+L L + +
Sbjct: 154 ATPGRLRDHIQSSSGAVNLSRCKFLVMDEADRMLSSTFVPELETILPLLPKNRQ------ 207
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L +A + + E +P+ + M +S T
Sbjct: 208 -TLLFTATMTESILALKDAEEDPAKRPFVHVCDMSISTVNT------------------- 247
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNH 309
L+ + + S++K +YL LL++ L E I+F + + +L
Sbjct: 248 ----------LDQFYVFVPSQVKVVYLAHLLRTDDLKERSVIIFCGRCSTAELITVMLKE 297
Query: 310 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 369
G I+ Q R +L FR +++L+S+D +RG+D+ V V+N+D P
Sbjct: 298 LG---IRCTALHSEMSQQQRLDSLGKFRAEVVKILISTDVGSRGLDIPSVECVLNFDIPR 354
Query: 370 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVK-------RFKKLLQKADNDSCPIHSIPSS 422
YIHR GRTARAG+ G+ +++ + +++ R K ++K + D + I S
Sbjct: 355 DPTDYIHRVGRTARAGRGGKAISIVAEKDIQLIQNIEERTNKQMEKYEVDENEVLDILSD 414
Query: 423 LIESLR 428
+ + R
Sbjct: 415 VTAAKR 420
>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 524
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 187/415 (45%), Gaps = 81/415 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRA-VRCLRA 59
G ++ P+Q + I L +D+ + TG+GKT ++ LP++ L S RA R RA
Sbjct: 21 GYTTATPIQA----QAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDKLQSGRAKARMPRA 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV F A LS L +G S D+
Sbjct: 77 LVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQ-------------------- 116
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L VD+L+ATPGRL+DH RG + + +LVVDE DR+L
Sbjct: 117 -EKKLDRGVDVLIATPGRLLDHFE--RGKLLMTGVQFLVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER FK P P+ + SAT+ + +L
Sbjct: 164 ---------------FIPD------------IERIFKMTP-PKKQTLFFSATMPPEITRL 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
+ L P+ + TT +L ++ S + K K L L AL++ E IV
Sbjct: 196 TKQFLRDPVRIEVARPATTNANITQLLVKVPS----SDPKAKRLALRALIEKAQIETGIV 251
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F + + L G I G Q+ R KTL FR G +++LV+SD R
Sbjct: 252 FCNRKTEVDIVAKSLKVHGYDAAPI---HGDLDQTQRMKTLADFRSGALKILVASDVAAR 308
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
G+D+ V++V NYD P + Y+HR GRT RAG+ G + L+ + K F K+++
Sbjct: 309 GLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKGFDKVVK 363
>gi|432615625|ref|ZP_19851752.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
gi|431156800|gb|ELE57466.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
Length = 453
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EDL933]
gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
Sakai]
gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4024]
gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209396359|ref|YP_002269466.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4115]
gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
TW14359]
gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966]
gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|387505903|ref|YP_006158159.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|387881409|ref|YP_006311711.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|416309552|ref|ZP_11655924.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|416317432|ref|ZP_11660473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|416332189|ref|ZP_11670268.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|416781898|ref|ZP_11877367.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|416793131|ref|ZP_11882292.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|416804396|ref|ZP_11887151.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|416815421|ref|ZP_11891857.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97]
gi|416825253|ref|ZP_11896441.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|416836098|ref|ZP_11901713.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|419044083|ref|ZP_13591054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|419049436|ref|ZP_13596352.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|419055518|ref|ZP_13602371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|419061090|ref|ZP_13607869.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|419067186|ref|ZP_13613661.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|419074099|ref|ZP_13619667.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|419079198|ref|ZP_13624680.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|419084835|ref|ZP_13630244.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|419091085|ref|ZP_13636402.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|419096771|ref|ZP_13642013.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|419102575|ref|ZP_13647740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|419107936|ref|ZP_13653045.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|419113710|ref|ZP_13658740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|419119348|ref|ZP_13664326.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|419125059|ref|ZP_13669956.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|419130595|ref|ZP_13675442.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|419135320|ref|ZP_13680126.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|420268096|ref|ZP_14770500.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|420273875|ref|ZP_14776207.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|420279271|ref|ZP_14781536.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|420285269|ref|ZP_14787484.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|420290983|ref|ZP_14793146.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|420296582|ref|ZP_14798675.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|420302895|ref|ZP_14804921.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|420308059|ref|ZP_14810031.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|420313779|ref|ZP_14815684.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|421811066|ref|ZP_16246865.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|421817148|ref|ZP_16252703.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|421822551|ref|ZP_16257988.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|421829288|ref|ZP_16264615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|423664723|ref|ZP_17639886.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|424082066|ref|ZP_17818917.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|424088699|ref|ZP_17824945.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|424108130|ref|ZP_17842696.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|424114123|ref|ZP_17848259.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|424120181|ref|ZP_17853874.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|424126420|ref|ZP_17859615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|424145511|ref|ZP_17877271.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|424151642|ref|ZP_17882889.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|424190135|ref|ZP_17888328.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|424271705|ref|ZP_17894236.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|424425322|ref|ZP_17899959.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|424460367|ref|ZP_17911281.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|424473404|ref|ZP_17923064.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|424479335|ref|ZP_17928574.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|424485404|ref|ZP_17934260.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|424491576|ref|ZP_17939919.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|424498624|ref|ZP_17945886.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|424504858|ref|ZP_17951619.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|424511106|ref|ZP_17957321.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|424518644|ref|ZP_17963068.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|424524503|ref|ZP_17968517.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|424530707|ref|ZP_17974322.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|424536684|ref|ZP_17979934.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|424542601|ref|ZP_17985401.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|424548920|ref|ZP_17991111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|424555167|ref|ZP_17996880.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|424561523|ref|ZP_18002803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|424573744|ref|ZP_18014155.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|424579693|ref|ZP_18019614.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|425096364|ref|ZP_18499377.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|425102508|ref|ZP_18505148.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|425108313|ref|ZP_18510551.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|425124149|ref|ZP_18525707.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|425130179|ref|ZP_18531268.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|425136543|ref|ZP_18537257.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|425148733|ref|ZP_18548610.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|425154337|ref|ZP_18553879.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|425160784|ref|ZP_18559955.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|425166310|ref|ZP_18565111.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|425172598|ref|ZP_18570987.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|425178488|ref|ZP_18576530.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|425191392|ref|ZP_18588508.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|425197701|ref|ZP_18594343.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|425204368|ref|ZP_18600488.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|425210121|ref|ZP_18605847.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|425216172|ref|ZP_18611477.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|425222753|ref|ZP_18617595.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|425228981|ref|ZP_18623364.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|425235284|ref|ZP_18629238.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|425241281|ref|ZP_18634909.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|425247409|ref|ZP_18640604.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|425253144|ref|ZP_18646003.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|425259420|ref|ZP_18651779.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|425265567|ref|ZP_18657468.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|425292999|ref|ZP_18683570.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|425315656|ref|ZP_18704719.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|425327915|ref|ZP_18716122.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|425334099|ref|ZP_18721803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|425340513|ref|ZP_18727738.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|425352617|ref|ZP_18738981.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|425358604|ref|ZP_18744561.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|425364714|ref|ZP_18750242.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|425371162|ref|ZP_18756108.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|425383958|ref|ZP_18767821.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|425390648|ref|ZP_18774088.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|425396767|ref|ZP_18779796.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|425402754|ref|ZP_18785345.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|425409293|ref|ZP_18791431.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|425415574|ref|ZP_18797194.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|425426707|ref|ZP_18807746.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|428951536|ref|ZP_19023643.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|428957401|ref|ZP_19029068.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|428963723|ref|ZP_19034884.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|428969936|ref|ZP_19040549.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|428976421|ref|ZP_19046575.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|428982032|ref|ZP_19051749.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|428988330|ref|ZP_19057597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|428994131|ref|ZP_19063022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|429000267|ref|ZP_19068753.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|429006446|ref|ZP_19074338.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|429012785|ref|ZP_19080022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|429019038|ref|ZP_19085803.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|429031042|ref|ZP_19096893.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|429037193|ref|ZP_19102617.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|429043163|ref|ZP_19108143.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|429048882|ref|ZP_19113535.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|429054278|ref|ZP_19118758.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|429059931|ref|ZP_19124063.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|429065437|ref|ZP_19129277.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429071962|ref|ZP_19135308.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|429077288|ref|ZP_19140496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|429824529|ref|ZP_19355999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429830882|ref|ZP_19361698.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444923221|ref|ZP_21242900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444929524|ref|ZP_21248665.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444934814|ref|ZP_21253742.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444940413|ref|ZP_21259049.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444945962|ref|ZP_21264373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444951558|ref|ZP_21269771.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444957033|ref|ZP_21275021.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444962292|ref|ZP_21280031.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444973536|ref|ZP_21290805.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444979084|ref|ZP_21296069.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444984373|ref|ZP_21301233.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444989619|ref|ZP_21306350.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444994964|ref|ZP_21311552.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|445000476|ref|ZP_21316930.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|445005935|ref|ZP_21322265.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|445011046|ref|ZP_21327230.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|445016880|ref|ZP_21332922.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|445022315|ref|ZP_21338229.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|445027574|ref|ZP_21343342.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|445033074|ref|ZP_21348687.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|445038764|ref|ZP_21354226.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|445044065|ref|ZP_21359392.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|445049558|ref|ZP_21364714.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|445055210|ref|ZP_21370151.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
gi|452970952|ref|ZP_21969179.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4009]
gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
EDL933]
gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
Sakai]
gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4115]
gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359]
gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|374357897|gb|AEZ39604.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|377899702|gb|EHU64048.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|377901498|gb|EHU65814.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|377913110|gb|EHU77254.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|377917176|gb|EHU81241.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|377919854|gb|EHU83888.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|377931075|gb|EHU94945.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|377933305|gb|EHU97150.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|377938207|gb|EHV01975.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|377949244|gb|EHV12884.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|377950209|gb|EHV13837.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|377953743|gb|EHV17307.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|377964410|gb|EHV27845.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|377966303|gb|EHV29715.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|377970991|gb|EHV34348.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|377978988|gb|EHV42266.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|377979166|gb|EHV42443.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|377986469|gb|EHV49659.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|386794867|gb|AFJ27901.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|390649930|gb|EIN28402.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|390651672|gb|EIN29942.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|390669056|gb|EIN45761.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|390687795|gb|EIN62940.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|390690684|gb|EIN65470.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|390691364|gb|EIN66112.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|390709283|gb|EIN82393.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|390719403|gb|EIN92128.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|390732457|gb|EIO04142.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|390732767|gb|EIO04441.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|390735327|gb|EIO06721.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|390751004|gb|EIO20976.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|390751421|gb|EIO21332.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|390761962|gb|EIO31232.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|390776912|gb|EIO44791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|390781177|gb|EIO48862.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|390784981|gb|EIO52537.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|390794132|gb|EIO61431.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|390801014|gb|EIO68080.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|390808163|gb|EIO75009.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|390811320|gb|EIO78034.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|390818720|gb|EIO85089.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|390821664|gb|EIO87843.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|390836280|gb|EIP00833.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|390838892|gb|EIP03069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|390839808|gb|EIP03888.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|390854827|gb|EIP17604.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|390857889|gb|EIP20312.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|390858020|gb|EIP20441.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|390870510|gb|EIP32011.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|390874956|gb|EIP36038.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|390884803|gb|EIP45069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|390887323|gb|EIP47306.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|390893053|gb|EIP52621.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|390903454|gb|EIP62500.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|390908508|gb|EIP67331.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|390911273|gb|EIP69978.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|390924107|gb|EIP81909.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|390925816|gb|EIP83448.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|408071615|gb|EKH05950.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|408075733|gb|EKH09965.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|408085388|gb|EKH19012.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|408089225|gb|EKH22556.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|408094017|gb|EKH27062.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|408101056|gb|EKH33525.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|408109307|gb|EKH41234.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|408121072|gb|EKH52036.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|408129264|gb|EKH59497.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|408130964|gb|EKH61025.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|408140235|gb|EKH69770.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|408149439|gb|EKH78117.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|408151260|gb|EKH79768.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|408156447|gb|EKH84649.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|408166156|gb|EKH93774.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|408170867|gb|EKH98017.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|408172863|gb|EKH99915.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|408186144|gb|EKI12251.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|408190165|gb|EKI15836.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|408190455|gb|EKI16100.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|408232112|gb|EKI55365.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|408248415|gb|EKI70464.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|408258389|gb|EKI79660.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|408267432|gb|EKI87892.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|408268914|gb|EKI89236.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|408283982|gb|EKJ03111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|408286629|gb|EKJ05548.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|408299401|gb|EKJ17202.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|408299864|gb|EKJ17629.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|408315484|gb|EKJ31799.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|408315913|gb|EKJ32211.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|408330454|gb|EKJ45717.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|408335464|gb|EKJ50310.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|408336989|gb|EKJ51735.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|408349709|gb|EKJ63631.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|408352595|gb|EKJ66139.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|408557723|gb|EKK34146.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|408557978|gb|EKK34393.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|408558710|gb|EKK35069.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|408584545|gb|EKK59545.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|408588569|gb|EKK63141.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|408589960|gb|EKK64459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|408605138|gb|EKK78667.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|408606641|gb|EKK80067.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|408616341|gb|EKK89496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|427213706|gb|EKV83106.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|427215415|gb|EKV84597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|427232964|gb|EKW00763.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|427233069|gb|EKW00855.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|427234609|gb|EKW02286.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|427250384|gb|EKW17055.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|427251916|gb|EKW18438.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|427253243|gb|EKW19685.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|427269502|gb|EKW34459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|427269662|gb|EKW34614.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|427274177|gb|EKW38837.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|427285696|gb|EKW49635.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|427292672|gb|EKW55999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|427304283|gb|EKW66940.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|427305314|gb|EKW67909.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|427309391|gb|EKW71709.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|427320780|gb|EKW82514.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|427321347|gb|EKW83041.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|427333180|gb|EKW94290.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|427333393|gb|EKW94498.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|427336332|gb|EKW97310.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429259288|gb|EKY42985.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429261458|gb|EKY44900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444541943|gb|ELV21373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444549573|gb|ELV27810.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444551365|gb|ELV29325.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444564136|gb|ELV41093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444566458|gb|ELV43291.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444570293|gb|ELV46830.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444581231|gb|ELV57093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444584375|gb|ELV60020.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444598674|gb|ELV73587.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444599239|gb|ELV74129.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444607041|gb|ELV81638.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444613400|gb|ELV87659.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444613514|gb|ELV87772.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|444621829|gb|ELV95797.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|444631187|gb|ELW04791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|444631451|gb|ELW05049.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|444636219|gb|ELW09621.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|444646598|gb|ELW19600.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|444649268|gb|ELW22169.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|444652588|gb|ELW25346.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|444661713|gb|ELW34001.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|444665877|gb|ELW37971.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|444671957|gb|ELW43717.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|444674008|gb|ELW45592.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
Length = 455
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|419364204|ref|ZP_13905383.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13E]
gi|378218012|gb|EHX78286.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13E]
Length = 440
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 81
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 82 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 120
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 121 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 157
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 158 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 199
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 200 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 258
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 259 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 315
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 316 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 361
>gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|417627721|ref|ZP_12277968.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|432453551|ref|ZP_19695788.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|433032291|ref|ZP_20220065.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|345378025|gb|EGX09956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|430973690|gb|ELC90635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|431558677|gb|ELI32286.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
Length = 454
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739]
gi|170080456|ref|YP_001729776.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. K-12 substr.
DH10B]
gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11]
gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1]
gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989]
gi|238900056|ref|YP_002925852.1| ATP-dependent RNA helicase RhlE [Escherichia coli BW2952]
gi|251784316|ref|YP_002998620.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606]
gi|254287688|ref|YP_003053436.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50]
gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|378713847|ref|YP_005278740.1| DEAD/DEAH box helicase [Escherichia coli KO11FL]
gi|386279806|ref|ZP_10057482.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386596367|ref|YP_006092767.1| DEAD/DEAH box helicase [Escherichia coli DH1]
gi|386608116|ref|YP_006123602.1| RNA helicase [Escherichia coli W]
gi|386612960|ref|YP_006132626.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|386708558|ref|YP_006172279.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|387611339|ref|YP_006114455.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|387620524|ref|YP_006128151.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|388476882|ref|YP_489070.1| RNA helicase [Escherichia coli str. K-12 substr. W3110]
gi|404374120|ref|ZP_10979340.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|407468269|ref|YP_006785289.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482998|ref|YP_006780147.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483550|ref|YP_006771096.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415812962|ref|ZP_11504956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|415860752|ref|ZP_11534467.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|415875932|ref|ZP_11542552.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|416286848|ref|ZP_11648633.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|417120582|ref|ZP_11970140.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|417130674|ref|ZP_11975945.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|417152584|ref|ZP_11991375.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|417229406|ref|ZP_12030992.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|417261194|ref|ZP_12048682.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|417274502|ref|ZP_12061842.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|417275438|ref|ZP_12062775.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|417290025|ref|ZP_12077308.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|417580058|ref|ZP_12230876.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|417611890|ref|ZP_12262362.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|417633416|ref|ZP_12283635.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|417638120|ref|ZP_12288287.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|417672819|ref|ZP_12322278.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|417831928|ref|ZP_12478449.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|417864079|ref|ZP_12509126.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|417945085|ref|ZP_12588322.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|417975121|ref|ZP_12615921.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|418042874|ref|ZP_12681057.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|418301699|ref|ZP_12913493.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|418958870|ref|ZP_13510779.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|419141314|ref|ZP_13686068.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|419146912|ref|ZP_13691603.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|419152706|ref|ZP_13697290.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|419158127|ref|ZP_13702644.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|419163060|ref|ZP_13707536.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|419168783|ref|ZP_13713177.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|419174163|ref|ZP_13718016.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|419179764|ref|ZP_13723387.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|419185324|ref|ZP_13728846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|419190518|ref|ZP_13733985.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|419369058|ref|ZP_13910186.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|419390192|ref|ZP_13931029.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|419395363|ref|ZP_13936146.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|419405890|ref|ZP_13946592.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|419411382|ref|ZP_13952053.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|419809588|ref|ZP_14334473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|419925807|ref|ZP_14443635.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|419941037|ref|ZP_14457748.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|420347950|ref|ZP_14849344.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|420384419|ref|ZP_14883805.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|421776878|ref|ZP_16213479.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|422769987|ref|ZP_16823678.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|422785387|ref|ZP_16838126.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|422791573|ref|ZP_16844276.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|422819824|ref|ZP_16868034.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|422959077|ref|ZP_16971008.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|422991531|ref|ZP_16982302.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|422993473|ref|ZP_16984237.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|422998684|ref|ZP_16989440.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|423007145|ref|ZP_16997888.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|423008791|ref|ZP_16999529.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|423022979|ref|ZP_17013682.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|423028131|ref|ZP_17018824.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|423033965|ref|ZP_17024649.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|423036831|ref|ZP_17027505.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041950|ref|ZP_17032617.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048640|ref|ZP_17039297.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052222|ref|ZP_17041030.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059188|ref|ZP_17047984.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423701599|ref|ZP_17676058.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|425118864|ref|ZP_18520586.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|425271545|ref|ZP_18663041.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|427803888|ref|ZP_18970955.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|427808473|ref|ZP_18975538.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429723022|ref|ZP_19257911.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429775196|ref|ZP_19307194.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429780383|ref|ZP_19312333.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784436|ref|ZP_19316345.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429789773|ref|ZP_19321645.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429796003|ref|ZP_19327826.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429801928|ref|ZP_19333703.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429805560|ref|ZP_19337304.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429811156|ref|ZP_19342855.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429816507|ref|ZP_19348163.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429821715|ref|ZP_19353327.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429907384|ref|ZP_19373352.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911585|ref|ZP_19377541.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917420|ref|ZP_19383360.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922458|ref|ZP_19388379.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429923311|ref|ZP_19389227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932206|ref|ZP_19398100.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933808|ref|ZP_19399698.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939467|ref|ZP_19405341.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429947109|ref|ZP_19412964.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949741|ref|ZP_19415589.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429958019|ref|ZP_19423848.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432368810|ref|ZP_19611911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|432415781|ref|ZP_19658405.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|432484490|ref|ZP_19726410.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|432530124|ref|ZP_19767164.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|432533021|ref|ZP_19770012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|432562727|ref|ZP_19799348.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|432579446|ref|ZP_19815877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|432626403|ref|ZP_19862384.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|432636070|ref|ZP_19871952.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|432660024|ref|ZP_19895674.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|432669700|ref|ZP_19905241.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|432684601|ref|ZP_19919913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|432690689|ref|ZP_19925928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|432703361|ref|ZP_19938480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|432736297|ref|ZP_19971068.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|432749230|ref|ZP_19983844.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|432764118|ref|ZP_19998566.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|432804897|ref|ZP_20038838.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|432880532|ref|ZP_20097067.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|432933336|ref|ZP_20133004.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|432954097|ref|ZP_20146216.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|433046931|ref|ZP_20234342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|433091124|ref|ZP_20277420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|433129147|ref|ZP_20314616.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|433133962|ref|ZP_20319336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|433172626|ref|ZP_20357179.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|433192762|ref|ZP_20376776.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|442595224|ref|ZP_21013074.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442599480|ref|ZP_21017198.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443616850|ref|YP_007380706.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|450212255|ref|ZP_21894522.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|450240632|ref|ZP_21899377.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
gi|548730|sp|P25888.3|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase RhlE
gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
W3110]
gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110]
gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11]
gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989]
gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1]
gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952]
gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606]
gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W]
gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11FL]
gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|339413797|gb|AEJ55469.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|340735584|gb|EGR64641.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|341917368|gb|EGT66984.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|342363259|gb|EGU27369.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|342929072|gb|EGU97794.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|344195112|gb|EGV49182.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|345343247|gb|EGW75637.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|345365239|gb|EGW97348.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|345390130|gb|EGX19929.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|345395107|gb|EGX24859.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|354856533|gb|EHF16991.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|354857780|gb|EHF18233.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|354864548|gb|EHF24977.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|354874861|gb|EHF35227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|354878821|gb|EHF39168.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|354882613|gb|EHF42935.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|354884235|gb|EHF44548.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|354887292|gb|EHF47567.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|354900487|gb|EHF60621.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354903632|gb|EHF63732.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354905995|gb|EHF66077.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354916912|gb|EHF76882.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354920973|gb|EHF80898.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|359331489|dbj|BAL37936.1| RNA helicase [Escherichia coli str. K-12 substr. MDS42]
gi|371595351|gb|EHN84201.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|377998929|gb|EHV62016.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|378000431|gb|EHV63502.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|378002941|gb|EHV65990.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|378012216|gb|EHV75148.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|378015762|gb|EHV78653.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|378018001|gb|EHV80868.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|378026949|gb|EHV89581.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|378032742|gb|EHV95323.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|378037020|gb|EHV99555.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|378041755|gb|EHW04213.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|378221719|gb|EHX81964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|378242955|gb|EHY02903.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|378250840|gb|EHY10743.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|378257173|gb|EHY17015.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|378261059|gb|EHY20856.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|383404250|gb|AFH10493.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|383474131|gb|EID66127.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|384378339|gb|EIE36221.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|385157769|gb|EIF19760.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|385536439|gb|EIF83332.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|385711895|gb|EIG48851.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|386123053|gb|EIG71654.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386149237|gb|EIG95669.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|386153782|gb|EIH05063.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|386169308|gb|EIH35816.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|386205896|gb|EII10402.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|386224321|gb|EII46656.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|386232930|gb|EII64915.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|386242091|gb|EII79004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|386256063|gb|EIJ05751.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|388385529|gb|EIL47208.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|388401755|gb|EIL62377.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|391270091|gb|EIQ28988.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|391309255|gb|EIQ66932.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|404292334|gb|EJZ49160.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|406778712|gb|AFS58136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055295|gb|AFS75346.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064304|gb|AFS85351.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408197166|gb|EKI22433.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|408457992|gb|EKJ81782.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|408572879|gb|EKK48760.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|412962070|emb|CCK45984.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|412968652|emb|CCJ43277.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429349931|gb|EKY86666.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429350885|gb|EKY87608.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429351021|gb|EKY87742.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429365299|gb|EKZ01912.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429366250|gb|EKZ02853.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429368813|gb|EKZ05396.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429381220|gb|EKZ17707.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429382188|gb|EKZ18653.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429383623|gb|EKZ20082.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429395454|gb|EKZ31820.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429396668|gb|EKZ33016.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429397546|gb|EKZ33892.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409274|gb|EKZ45504.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417734|gb|EKZ53881.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421403|gb|EKZ57524.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429423143|gb|EKZ59251.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429427145|gb|EKZ63230.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434027|gb|EKZ70056.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429438014|gb|EKZ74008.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429443370|gb|EKZ79322.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429449473|gb|EKZ85372.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429455349|gb|EKZ91205.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430888022|gb|ELC10745.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|430942326|gb|ELC62459.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|431017641|gb|ELD31096.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|431056498|gb|ELD65999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|431062742|gb|ELD72002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|431097945|gb|ELE03270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|431107436|gb|ELE11601.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|431164351|gb|ELE64742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|431172964|gb|ELE73045.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|431201896|gb|ELF00592.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|431212870|gb|ELF10791.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|431224108|gb|ELF21337.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|431229075|gb|ELF25727.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|431245926|gb|ELF40204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|431285837|gb|ELF76672.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|431299242|gb|ELF88817.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|431312697|gb|ELG00686.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|431356509|gb|ELG43199.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|431412760|gb|ELG95559.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|431454978|gb|ELH35334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|431469395|gb|ELH49324.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|431571170|gb|ELI44070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|431613756|gb|ELI82925.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|431650869|gb|ELJ18177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|431662039|gb|ELJ28849.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|431695617|gb|ELJ60919.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|431720457|gb|ELJ84486.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|441604670|emb|CCP98208.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441651750|emb|CCQ02695.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443421358|gb|AGC86262.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|449322017|gb|EMD12021.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|449324310|gb|EMD14245.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
Length = 454
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|407782464|ref|ZP_11129676.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407205829|gb|EKE75795.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 515
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 183/405 (45%), Gaps = 76/405 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR------ 55
G + P+Q + I P L RDL + TG+GKT ++ALPI+ L+
Sbjct: 21 GYETPTPIQA----QAIPPVLTGRDLMGIAQTGTGKTAAFALPILNRLTEEGNHIKTPRG 76
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
R L++ PTR+LA Q+ + F + LSV G G+
Sbjct: 77 SCRVLILSPTRELASQIAESFRVYGKFLNLSVATVFG-------------------GVSA 117
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
P+ + LQ VDI+VATPGRL+DH+ R L+ + V+DE D++L + +
Sbjct: 118 GPQ--AKALQRGVDIVVATPGRLIDHLQ-NRVVRLDQVEIFVLDEADQMLDMGFIQPIRR 174
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+++ + +N F A+ PR ++ L+ L DP
Sbjct: 175 IVKTLPAKRQNLFFSAT--------------------------MPREIE-TLAGELLHDP 207
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVF 293
K+A P+ T ER+ + + LK L LL +G + +VF
Sbjct: 208 AKVAVT----PVASTA--------ERVSQQVIFVPTGLKRALLADLLSDAQMGFGRTLVF 255
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
T + ++ L G + I G + QS R + L AFR+G +VL+++D RG
Sbjct: 256 TRTKHGADKVVRYLEGAGIVSAAIH---GNKSQSQRERALLAFRDGACKVLIATDIAARG 312
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
+DV+GV +V+NYD P ++Y+HR GRTARAG G + ++E
Sbjct: 313 IDVDGVTHVINYDLPNIAESYVHRIGRTARAGADGMAISFCDREE 357
>gi|422353494|ref|ZP_16434247.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
117-3]
gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3]
Length = 442
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046]
gi|383177421|ref|YP_005455426.1| ATP-dependent RNA helicase RhlE [Shigella sonnei 53G]
gi|414575042|ref|ZP_11432248.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3233-85]
gi|415850222|ref|ZP_11527142.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
gi|418263069|ref|ZP_12884253.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei str. Moseley]
gi|420357517|ref|ZP_14858525.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3226-85]
gi|420362435|ref|ZP_14863351.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei 4822-66]
gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
gi|391287551|gb|EIQ46075.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3226-85]
gi|391287991|gb|EIQ46500.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3233-85]
gi|391296008|gb|EIQ54124.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei 4822-66]
gi|397902862|gb|EJL19172.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei str. Moseley]
Length = 454
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026]
gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|417585601|ref|ZP_12236377.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|422332390|ref|ZP_16413404.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|432352753|ref|ZP_19596037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|432400987|ref|ZP_19643741.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|432425043|ref|ZP_19667558.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|432459813|ref|ZP_19701970.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|432474903|ref|ZP_19716911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|432488391|ref|ZP_19730277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|432521485|ref|ZP_19758641.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|432536852|ref|ZP_19773769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|432630413|ref|ZP_19866357.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|432640011|ref|ZP_19875851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|432665080|ref|ZP_19900666.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|432773985|ref|ZP_20008271.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|432838408|ref|ZP_20071897.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|432885207|ref|ZP_20099802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|432911150|ref|ZP_20117631.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|433017767|ref|ZP_20206028.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|433052168|ref|ZP_20239394.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|433067044|ref|ZP_20253870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|433157777|ref|ZP_20342642.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|433177329|ref|ZP_20361779.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|433202290|ref|ZP_20386089.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026]
gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|345340250|gb|EGW72669.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|373246701|gb|EHP66153.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|430877681|gb|ELC01115.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|430927585|gb|ELC48148.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|430958277|gb|ELC76871.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|430991096|gb|ELD07512.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|431008411|gb|ELD23212.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|431023274|gb|ELD36471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|431044549|gb|ELD54821.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|431072429|gb|ELD80180.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|431173448|gb|ELE73524.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|431184527|gb|ELE84284.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|431203485|gb|ELF02142.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|431319983|gb|ELG07635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|431390874|gb|ELG74522.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|431419190|gb|ELH01548.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|431443866|gb|ELH24891.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|431536139|gb|ELI12470.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|431574944|gb|ELI47701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|431589985|gb|ELI61099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|431681153|gb|ELJ46959.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|431709238|gb|ELJ73708.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|431725326|gb|ELJ89181.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
Length = 454
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 190/407 (46%), Gaps = 78/407 (19%)
Query: 13 VWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTR 66
+ Q+ I P + E RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR
Sbjct: 27 IQQQAI-PAVMEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 86 ELAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRG 124
Query: 127 AVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 125 GVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML------------------- 162
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
G + IRR P R ++ SAT + D LA+ LH
Sbjct: 163 -------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLH 203
Query: 245 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 304
+PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 204 NPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLA 262
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVN
Sbjct: 263 EQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
Y+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|422827999|ref|ZP_16876172.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|371615757|gb|EHO04145.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
Length = 454
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197]
gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
Length = 454
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str.
E2348/69]
gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|417754655|ref|ZP_12402746.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|418995949|ref|ZP_13543556.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|419001015|ref|ZP_13548567.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|419006513|ref|ZP_13553966.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|419012350|ref|ZP_13559714.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|419017347|ref|ZP_13564666.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|419022935|ref|ZP_13570176.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|419027809|ref|ZP_13575002.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|419033704|ref|ZP_13580800.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|419038617|ref|ZP_13585671.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69]
gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|377847939|gb|EHU12936.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|377849589|gb|EHU14558.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|377852750|gb|EHU17664.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|377861973|gb|EHU26787.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|377865803|gb|EHU30593.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|377867945|gb|EHU32694.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|377878098|gb|EHU42686.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|377882881|gb|EHU47412.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|377884294|gb|EHU48807.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|377897502|gb|EHU61881.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
Length = 453
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQYLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|431805723|ref|YP_007232624.1| ATP-dependent RNA helicase [Liberibacter crescens BT-1]
gi|430799698|gb|AGA64369.1| ATP-dependent RNA helicase [Liberibacter crescens BT-1]
Length = 464
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 176/370 (47%), Gaps = 68/370 (18%)
Query: 33 TGSGKTLSYALPIVQTLSNRAVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 90
TG+GKT S+ LP++ L R AL++ PTR+LA QV D F L+V L
Sbjct: 47 TGTGKTASFVLPMLTILEESRARARMPLALILEPTRELAAQVADSFEKYGKNHKLNVALL 106
Query: 91 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FT 149
+G G+ ++ ++ ++L+ VD+L+ TPGR++DH RG
Sbjct: 107 IG-------------------GVSFEEQN--RKLERGVDVLICTPGRMLDHFE--RGKLL 143
Query: 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 209
+ + LV+DE DR+L ++P + + R + R T L SA SL+ +
Sbjct: 144 MSGIKILVIDEADRMLD---MGFIPDIENIVRIISSTR----QTLLFSATMSLELQK--- 193
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 269
+ + F P T+ +P+ A + H + + ESY+
Sbjct: 194 ISKNFLRNP----------KTIEVNPSSSAAKTVKH----------WFVAAHSESYQ--- 230
Query: 270 ESKLKPLYLVALLQSLGEEK-CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K + L L++S + K I+F + + L LNH G + G Q +
Sbjct: 231 ----KRVVLRKLIRSQDDLKNAIIFCNQKKDVTSLFRSLNHHG---FSVCAIHGDMNQRM 283
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R K L F+EG IQ++V+SD RG+D+ V +V N+D P + + YIHR GRT RAG+ G
Sbjct: 284 RMKILDNFKEGTIQLMVASDIAARGLDIHDVGHVFNFDVPIHAEDYIHRIGRTGRAGRHG 343
Query: 389 RCFTLL-HKD 397
+ FTL+ HKD
Sbjct: 344 KAFTLVTHKD 353
>gi|432769642|ref|ZP_20003995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|432960359|ref|ZP_20150490.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|433062038|ref|ZP_20248995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
gi|431317724|gb|ELG05500.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|431478046|gb|ELH57805.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|431586954|gb|ELI58336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
Length = 454
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKHKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|429856827|gb|ELA31721.1| ATP-dependent RNA helicase dbp6 [Colletotrichum gloeosporioides
Nara gc5]
Length = 877
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 161/322 (50%), Gaps = 73/322 (22%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG- 84
DL + + TGSGKTL+YALPIV+ +S AV LRAL+VLPTR+L Q ++VF A A
Sbjct: 340 DLLVAAATGSGKTLAYALPIVRDISQGAVTRLRALIVLPTRELVKQAQEVFELCAGAFDG 399
Query: 85 -----LSVGLAVGQSSIADEISELIKRPKLEAGICY-----------------DPE---- 118
+ +G+A+G + E + LI+R + Y DPE
Sbjct: 400 RDQKRVRIGIAIGSQQLKYEQTNLIEREEKYDPEAYQAANQRELEAWKDVEEVDPETEDS 459
Query: 119 ----------DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 168
D + + S VD+L+ TPGRL++HIN T GF+L+++ +LVVDE D+LL ++
Sbjct: 460 TSRVEAGSLPDHIVDYTSKVDVLICTPGRLVEHINLTPGFSLDYVRWLVVDEADKLLAQS 519
Query: 169 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 228
+Q WL V+ R+ +FS R F D + K+VLS
Sbjct: 520 FQGWLDVVMPKLRT---KKFS---------------------ARDFPDSNLSGVRKVVLS 555
Query: 229 ATLTQDPNKLAQLDLHHP-LFLTTGE--------TRYKLPERL-ESYKLICESKLKPLYL 278
ATLT+D + L+ L L P L + GE + LP L ES + ++ LKPLYL
Sbjct: 556 ATLTRDLSLLSGLQLRRPQLIVLEGEKADGTAPIAEHTLPTLLKESAIRVHDANLKPLYL 615
Query: 279 VALLQSLGEEKCIVFTSSVEST 300
+ LL LG +S E+T
Sbjct: 616 IDLL--LGGHLMSEASSKAEAT 635
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 290 CIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
++FT S ES RL L++ L I + Q+ S R + L+AF ++++LV+SD
Sbjct: 708 ALIFTKSNESALRLSRLISLLHPSLSPFIATLTSTQKTSDRRRALRAFASRRLRLLVASD 767
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+ RG+D+ ++NV+NYD PA Y+HR GRTARAG++G +TL+ E F + K
Sbjct: 768 LVARGIDLPQLDNVINYDLPASAAGYVHRVGRTARAGRVGAAWTLVEDGESGWFWGKIAK 827
Query: 409 A 409
A
Sbjct: 828 A 828
>gi|423113365|ref|ZP_17101056.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
gi|376388734|gb|EHT01427.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
Length = 454
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 188/407 (46%), Gaps = 76/407 (18%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTR 66
++ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR
Sbjct: 26 SIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHLIQKEPHAKGRRPVRALILTPTR 85
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ G V S + L+ + G+ +P+ + +L+S
Sbjct: 86 ELAAQI---------------GENVRDYSKYLNVRSLV----VFGGVSINPQ--MMKLRS 124
Query: 127 AVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
VDILVATPGRL+D H NA +L+ + LV+DE DR+L
Sbjct: 125 GVDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEADRML------------------- 162
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
G + IRR P R ++ SAT + D LA+ LH
Sbjct: 163 -------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKSLAEKLLH 203
Query: 245 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 304
+PL + R E++ + K K L ++ ++ +VFT + + L
Sbjct: 204 NPLEIEVAR-RNTASEQVSQLVHFVDKKRKRELLSQMIGEGNWQQVLVFTRTKHGANHLA 262
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVN
Sbjct: 263 EQLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVN 319
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQK 408
Y+ P + Y+HR GRT RA G +L+ DE K ++LL+K
Sbjct: 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDIERLLKK 366
>gi|309786547|ref|ZP_07681170.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
1617]
gi|308925610|gb|EFP71094.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
1617]
Length = 449
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 81
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 82 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 120
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 121 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 157
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 158 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 199
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 200 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 258
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 259 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 315
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 316 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 361
>gi|406986526|gb|EKE07099.1| hypothetical protein ACD_18C00189G0005 [uncultured bacterium]
Length = 451
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 195/410 (47%), Gaps = 74/410 (18%)
Query: 15 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73
Q + PG E +D+ + TG+GKTL+Y +P++Q L+ + L+++PTR+LA QV
Sbjct: 53 QHQVIPGALEGKDVVGIAQTGTGKTLAYGIPLIQNLATG--NGGQGLILVPTRELAQQVA 110
Query: 74 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 133
D ++I ++GL + + +G G+ P+ +++L++ I++A
Sbjct: 111 DALSSIGKSLGLRIAVIIG-------------------GVSSRPQ--IKDLRNNPHIVIA 149
Query: 134 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 193
TPGRL D + R + L+ + L++DE DR+L
Sbjct: 150 TPGRL-DDLMEQRQYRLDKVSMLILDEADRMLDVG------------------------- 183
Query: 194 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 253
FLP IRR FK P R M+ SAT+ + LA + PL +
Sbjct: 184 FLPQ-------IRRI-----FKLAPVNRQT-MLFSATMPPSISSLASAFMKMPLRIEIAP 230
Query: 254 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313
E +E I K L +LL++ ++ ++F+ + R+ +N G
Sbjct: 231 QGTS-AENVEQEVFIISKPDKMRLLYSLLKTYKDDTVLIFSRTKHGAKRIARDINTVGHS 289
Query: 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
+I + Q R +L+ F G+ +++V++D RG+DV+ ++ V+N+D P +
Sbjct: 290 ATEIHSN---RTQGQRKASLEGFSRGRFRIMVATDIAARGIDVKQISLVINFDLPDNSED 346
Query: 374 YIHRAGRTARAGQLGRCFTLL---HKDEVKRFKKLLQKADNDSCPIHSIP 420
Y+HR GRT RAG+ G+ + + K ++++ +KL++K + PI +P
Sbjct: 347 YVHRIGRTGRAGRSGKAISFVTPSEKMDIRKIEKLIRK----TLPILDLP 392
>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
Length = 471
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 129/422 (30%), Positives = 194/422 (45%), Gaps = 84/422 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G + P+Q I P L RD+ + TG+GKT S+ LP++ L+ RA R R+
Sbjct: 21 GYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F + L+ L +G G+ + +D
Sbjct: 77 LVLCPTRELAAQVAENFDTYTKHLKLTKALLIG-------------------GVSFKEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 118 AL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER F P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IERIFSLTPFTRQT-LFFSATMAPEIERI 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC-- 290
L P + T ET + + + E+ K L AL+ + GE KC
Sbjct: 196 TNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALIDAEGE-KCTN 254
Query: 291 -IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
I+F + + L +G I G QS R++TL FREGK+++LV+SD
Sbjct: 255 AIIFCNRKTDVDIVAKSLQKYGYDAAPI---HGDLDQSQRTRTLDGFREGKLRLLVASDV 311
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDE--VKRFKKLL 406
RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ TL + +DE + +KL+
Sbjct: 312 AARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKALDAIEKLI 371
Query: 407 QK 408
QK
Sbjct: 372 QK 373
>gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354]
Length = 454
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 190/407 (46%), Gaps = 78/407 (19%)
Query: 13 VWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTR 66
+ Q+ I P + E RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR
Sbjct: 27 IQQQAI-PAVMEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 86 ELAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRG 124
Query: 127 AVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 125 GVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML------------------- 162
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
G + IRR P R ++ SAT + D LA+ LH
Sbjct: 163 -------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLH 203
Query: 245 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 304
+PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 204 NPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLA 262
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVN
Sbjct: 263 EQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
Y+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|227833123|ref|YP_002834830.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262182386|ref|ZP_06041807.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
ATCC 700975]
gi|227454139|gb|ACP32892.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
ATCC 700975]
Length = 430
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 184/411 (44%), Gaps = 72/411 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLR 58
GI++ FP+Q A + L +D+ PTGSGKT ++ LP++ L+ V R
Sbjct: 21 GITTPFPIQEAAIPDA----LSGKDVLGRGPTGSGKTFTFGLPMLSRLAASGVSRPAHPR 76
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
LV+ PTR+LA Q++ A A+GL V VG +I + I L RP
Sbjct: 77 GLVLAPTRELATQIQQRLEEPAAALGLRVLAVVGGVNINNHIRSL-ARP----------- 124
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
VD+LVATPGR D I+ + F +H+ +DE D++ + + +L+
Sbjct: 125 ---------VDLLVATPGRAQDLIDQGKLF-FDHVAIAALDEADQMADMGFLPQVRKLLK 174
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LT + + +++ SATL + NKL
Sbjct: 175 LTPEEGQ--------------------------------------RLLFSATLDGEVNKL 196
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+ +H P+ +T + + +E + LI + V L + K I+F +
Sbjct: 197 VEQFMHEPVTHSTAPVEAAV-DTME-HHLIFIGTREARNDVVLRLGARKGKTIMFMRTKH 254
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
R L G I G + Q R+K ++ F +G + VLV++D RG+D+
Sbjct: 255 GVDRQAKKLRRVG---INALPLHGDKGQGSRTKAIEGFADGSVPVLVATDIAARGIDIAD 311
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
V+ VV+ D PA K Y+HR+GRTAR G+ G TL+ ++ KL+ KA
Sbjct: 312 VSLVVHVDPPAEHKAYLHRSGRTARGGESGTVVTLVTDEQRDEVAKLIAKA 362
>gi|418254156|ref|ZP_12879053.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 6603-63]
gi|420370803|ref|ZP_14871309.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391319894|gb|EIQ76836.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|397900513|gb|EJL16872.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 6603-63]
Length = 406
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLEK 366
>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
Length = 574
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 189/418 (45%), Gaps = 91/418 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G S P+Q I P L +D+ + TG+GKT S+ LP++ LS RA R R+
Sbjct: 21 GYESPTPIQAGA----IPPALEGKDVLGIAQTGTGKTASFTLPMISLLSKGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F A + L+ L +G G+ + +D
Sbjct: 77 LVLAPTRELAAQVAENFDAYSKYSKLTKALLIG-------------------GVSFKEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH+ RG L + +VVDE DR+L
Sbjct: 118 KL--IDRGVDVLIATPGRLLDHVE--RGKLLLTGVQIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER FK P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IERIFKLTPFTRQT-LFFSATMAPEIERI 195
Query: 239 AQLDLHHPLFL------TTGETR-----YKLPERLESYKLICESKLKPLYLVALLQSLGE 287
L P+ + TT ET + P+R E +K K L A +++ GE
Sbjct: 196 TNTFLSAPVKVEVARAATTSETITQGLIWHEPKRRE-----FGAKDKRNILRATIEAEGE 250
Query: 288 EKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
KC I+F + + L G + G QS R K L FREG+I+ L
Sbjct: 251 -KCTNAIIFCNRKVEVDIVAKSLKKHG---YNAEPIHGDLDQSHRMKVLNGFREGEIRFL 306
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G FT+ ++ K+
Sbjct: 307 CASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRIGRTGRAGRTGTAFTIATPNDAKQL 364
>gi|423107485|ref|ZP_17095180.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
gi|376388510|gb|EHT01205.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
Length = 454
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L ++ R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHLIHKEPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S + L+ + G+ +P+ + +L+S
Sbjct: 87 LAAQI---------------GENVRDYSKYLNVRSLV----VFGGVSINPQ--MMKLRSG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VDILVATPGRL+D H NA +L+ + LV+DE DR+L
Sbjct: 126 VDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKSLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVSQLVHFVDKKRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE K ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDIERLLKK 366
>gi|237805399|ref|ZP_04592103.1| ATP-dependent RNA helicase RhlB, partial [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331026506|gb|EGI06561.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 355
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 188/408 (46%), Gaps = 74/408 (18%)
Query: 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR----AVRCLRALVVLPTRDLALQVKDV 75
P L RDL + TG+GKT +ALP++Q L+ A +RALV+ PTR+LA QV +
Sbjct: 2 PVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSIRALVLAPTRELADQVHES 61
Query: 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135
A + LS A G G+ +P+ + +L+ VD+LVATP
Sbjct: 62 IRQYAEHLPLSTYAAYG-------------------GVSINPQ--MMKLRKGVDVLVATP 100
Query: 136 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
GRL+D ++ + L L++DE DR+L + +P V Q+ R
Sbjct: 101 GRLLD-LHRQKAVKFSQLQTLILDEADRMLDMGF---IPQVRQIIRQTPHK--------- 147
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
G +T ++ SAT T+D LA+ P + E+
Sbjct: 148 ----GERQT--------------------LLFSATFTEDVMNLAKQWTTEPSIVEI-ESL 182
Query: 256 YKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313
+ +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 183 NVASDNVEQHIYAVAGADKYKLLY--NLVTDNGWERVMVFANRKDEVRRIEERLVRDG-- 238
Query: 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 239 -VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDD 297
Query: 374 YIHRAGRTARAGQLGRCFTLLHKDEVKRF----KKLLQKADNDSCPIH 417
Y+HR GRT RAG G + +D+ + +KL +K ++ P H
Sbjct: 298 YVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTH 345
>gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
Length = 403
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 194/418 (46%), Gaps = 74/418 (17%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+Q+
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQI 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQELQSAVDIL 131
D A+A L++ G G+ Y D+L Q DI+
Sbjct: 92 ADQARALAKNTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +L++DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLKEYIDAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L DP A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNDP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R K+ + E KL+ L + Q+ E+ IVF + E RL L
Sbjct: 216 -RERKKIAQWYHRAD-DAEHKLELLKHIITQQA---ERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FR+G + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 429
Y+HR GRTARAG+ G +++ + ++ + D I ++ +RP
Sbjct: 328 DVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVKED------IKERFVKEMRP 379
>gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
Length = 407
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 188/399 (47%), Gaps = 74/399 (18%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+Q+
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQI 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQELQSAVDIL 131
D A+A L++ G G+ Y D+L Q DI+
Sbjct: 92 ADQARALAKNTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +L++DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLKEYIDAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L DP A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNDP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R K+ + E KL+ L + Q+ E+ IVF + E RL L
Sbjct: 216 -RERKKIAQWYHRAD-DAEHKLELLKHIITQQA---ERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FR+G + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHK------DEVKRFKK 404
Y+HR GRTARAG+ G +++ D V R+ K
Sbjct: 328 DVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366
>gi|392978221|ref|YP_006476809.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392324154|gb|AFM59107.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 450
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 190/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP+++ L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELLVKNQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSRYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+++ LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDNVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR K PR ++ SAT + + LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLA------KLPPRRQNLLFSATFSDEIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEVEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKK 366
>gi|422763931|ref|ZP_16817684.1| DEAD/DEAH box helicase [Escherichia coli E1167]
gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167]
Length = 454
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
Length = 501
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 124/433 (28%), Positives = 196/433 (45%), Gaps = 87/433 (20%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RA-VRCLRALV 61
S+ + + + TI L ++D+ + TG+GKT S+ LP++ L RA R R L+
Sbjct: 55 SAGYTIPTPIQSRTIPYILQKKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARIPRTLI 114
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA QVK+ F L+V L +G G+ ++ +D
Sbjct: 115 LEPTRELAAQVKENFDKYGVNHNLNVALLIG-------------------GVSFEHQD-- 153
Query: 122 QELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 154 RKLERGADVLIATPGRLLDHFE--RGKLLLVGVEILVIDEADRMLNMG------------ 199
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
F+P VER K P+ R + SAT+ + +L +
Sbjct: 200 -------------FIPD------------VERICKVTPFTRQT-LFFSATMAPEITQLTK 233
Query: 241 LDLHHPLFLTTGE---TRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEE--KCIVFT 294
LH P+++ E T + +RL +S C+ K L L+Q+ G+E I+F
Sbjct: 234 QFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKA---VLKELIQNEGDELKNAIIFC 290
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ + + L + + + G Q R+ TL +F+ K +L++SD RG+
Sbjct: 291 NRKKD---ISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLIASDVAARGL 347
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D+ V++V NYD P + + YIHR GRT RA + G+ FT++ K + K C
Sbjct: 348 DIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYI-----------C 396
Query: 415 PIHSIPSSLIESL 427
I I IE L
Sbjct: 397 AIEEISKEKIEWL 409
>gi|392962181|ref|ZP_10327628.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421055965|ref|ZP_15518892.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421068803|ref|ZP_15530040.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421073056|ref|ZP_15534160.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392438381|gb|EIW16204.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392439079|gb|EIW16825.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392445483|gb|EIW22815.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392452939|gb|EIW29844.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
Length = 447
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 178/385 (46%), Gaps = 87/385 (22%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
+D+ S TG+GKTL++ LPI++ + + ++AL++ PTR+LALQ+ A +A +G
Sbjct: 41 KDVVGQSQTGTGKTLAFILPILEKIEI-SKPIVQALIITPTRELALQITREVAKLADQLG 99
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDH 141
+ V L+V Y +DV +++L+ I++ TPGRLMDH
Sbjct: 100 IQV-LSV-----------------------YGGQDVDRQIKKLKGGAQIVIGTPGRLMDH 135
Query: 142 INATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 200
+ RG LE++ LV+DE D++L + +L V +L R + R +
Sbjct: 136 LR--RGTIQLENVTKLVLDEADQML---HMGFLEDVEELVRQTSNKRQT----------- 179
Query: 201 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-------FLTTGE 253
M+ SAT+ LA + PL +T E
Sbjct: 180 ------------------------MLFSATMPSKIRGLADRYMRKPLDIRIQTKNITLDE 215
Query: 254 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313
+ + E ES K++ S + Y L IVF + + + L+ G
Sbjct: 216 IKQIMVEVPESEKIVKLSSMIDEYRPYL--------AIVFCHTKKRAIAVNMALSQKG-- 265
Query: 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
+ E G Q R + +K FRE KIQ+LV++D RG+DVEGV ++ NYD P + +
Sbjct: 266 -YETDELHGELSQPKREQVMKRFREAKIQILVATDIAARGLDVEGVTHIFNYDIPHDVDS 324
Query: 374 YIHRAGRTARAGQLGRCFTLLHKDE 398
YIHR GRT RAGQ G TL+ E
Sbjct: 325 YIHRIGRTGRAGQAGMAITLIDPHE 349
>gi|419865132|ref|ZP_14387522.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H25 str.
CVM9340]
gi|388338203|gb|EIL04676.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H25 str.
CVM9340]
Length = 454
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNICSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|432552747|ref|ZP_19789477.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
gi|431086319|gb|ELD92342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
Length = 453
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
+N G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QINKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|325189223|emb|CCA23746.1| DEAD box helicase putative [Albugo laibachii Nc14]
Length = 809
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 192/420 (45%), Gaps = 67/420 (15%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--------A 59
P+Q+ + I GL +RD+ + TGSGKT ++ +PI+ L + L A
Sbjct: 375 PIQM----QAIPIGLAKRDIIGIAETGSGKTAAFLIPIIAYLYHLPAVMLERTGEQGPLA 430
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LALQ++ AI VG+ Q+ I L ED
Sbjct: 431 LIMAPTRELALQIEQ--EAIKLCKHTQVGVVGSQNRIR----------TLSVVGGQSIED 478
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ- 178
+L+ VDI++ TPGRLMD + + L Y+V+DE DR++ ++ + VL
Sbjct: 479 QAFKLRQGVDIIIGTPGRLMDCME-SHYLVLNQCNYVVLDEADRMIDMGFEPQVVAVLDN 537
Query: 179 ---LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
L +S+NE +ER + + V M+ SAT+ +
Sbjct: 538 MGSLLKSENEEEMEKQ------------------LERANNAQEFRYRVTMMFSATMPTEV 579
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ----SLGE---- 287
+LA+ L HP + G+ +R+E + S K L L LL S G+
Sbjct: 580 ERLAKTYLRHPAIIKIGDEDSGKNKRIEQRVVFLNSGKKKLRLQHLLHETLSSSGQVRIS 639
Query: 288 --------EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
+K +VF + + L L G R I G + Q R ++L+ FREG
Sbjct: 640 RKEKVVDGQKVMVFVNIKKECDVLGKYLAQEG-FRTTI--LHGGKSQEQREESLRGFREG 696
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDE 398
VLV++D RG+D+ V +VVNYD P+ I+ Y HR GRT RAG+ G + L ++DE
Sbjct: 697 FCDVLVATDVAGRGLDIPDVTHVVNYDLPSKIENYCHRIGRTGRAGKEGVAISFLTNEDE 756
>gi|451975526|ref|ZP_21926713.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
gi|451930509|gb|EMD78216.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
Length = 407
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 188/399 (47%), Gaps = 74/399 (18%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+Q+
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQI 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQELQSAVDIL 131
D A+A L++ G G+ Y D+L Q DI+
Sbjct: 92 ADQARALAKNTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +L++DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLKEYIDAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L DP A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNDP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R K+ + E KL+ L + Q+ E+ IVF + E RL L
Sbjct: 216 -RERKKIAQWYHRAD-DAEHKLELLKHIITQQA---ERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FR+G + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHK------DEVKRFKK 404
Y+HR GRTARAG+ G +++ D V R+ K
Sbjct: 328 DVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366
>gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
Length = 407
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 188/399 (47%), Gaps = 74/399 (18%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+Q+
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQI 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQELQSAVDIL 131
D A+A L++ G G+ Y D+L Q DI+
Sbjct: 92 ADQARALAKNTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +L++DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLKEYIDAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L DP A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNDP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R K+ + E KL+ L + Q+ E+ IVF + E RL L
Sbjct: 216 -RERKKIAQWYHRAD-DAEHKLELLKHIITQQA---ERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FR+G + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHK------DEVKRFKK 404
Y+HR GRTARAG+ G +++ D V R+ K
Sbjct: 328 DVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366
>gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
Length = 407
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 195/418 (46%), Gaps = 74/418 (17%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+QV
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQV 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQELQSAVDIL 131
D A+A L++ G G+ Y + D+L Q DI+
Sbjct: 92 ADQARALAKKTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +LV+DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLREYIDAER-FDCRAIEWLVLDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L +P A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNEP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
+ +++ + +S L L+ + + E+ IVF + E RL L
Sbjct: 216 -----RERKKIAQWYHRADSAEHKLALLKHIITEQAERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FR+G + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 429
Y+HR GRTARAG+ G +++ + ++ + D I I+ +RP
Sbjct: 328 DVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVKED------IKERFIKEMRP 379
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRALVVLPT 65
F A+ +++I L D+ + TG+GKTL++ P++ L N + ++ALV+ PT
Sbjct: 24 FETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDNEKKKGVKALVLTPT 83
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ+KD ++ V G SI +I ++++
Sbjct: 84 RELALQIKDELKRLSKYSKTKVLPVYGGESIERQI---------------------KDIK 122
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
S VDI+V TPGR++DHIN R L + +L++DE D +L + + T+++ T + +
Sbjct: 123 SGVDIVVGTPGRILDHIN-RRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQ 181
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
A+ P I++ + KD + ++K L+ +K+AQ H+
Sbjct: 182 TMLFSATMPAP--------IKKLALNYMKKDVEHIAILKKSLTV------DKIAQ---HY 224
Query: 246 PLFLTTGETRYKL------PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
F + + + E ES + C +K LV +QS G +VE
Sbjct: 225 --FAVKNKDKLEAICRIIDSEEPESAIIFCRTKRGVDELVEAMQSKG--------YNVEG 274
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
H G Q+ R TLK F++ + LV++D RG+DVE +
Sbjct: 275 MH--------------------GDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENI 314
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++V+NYD P ++Y+HR GRT RA + G ++L+ EV +++
Sbjct: 315 SHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360
>gi|365969640|ref|YP_004951201.1| ATP-dependent RNA helicase rhlE [Enterobacter cloacae EcWSU1]
gi|365748553|gb|AEW72780.1| ATP-dependent RNA helicase rhlE [Enterobacter cloacae EcWSU1]
Length = 460
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP+++ L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELLVKNQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V + S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVREYSRYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNA---LKLDSIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR K PR ++ SAT + + LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLA------KLPPRRQNLLFSATFSDEIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEVEVAR-RNTASEQITQHVHFVDKKRKRELLSHMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALAEFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLRK 366
>gi|417711406|ref|ZP_12360409.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|417716231|ref|ZP_12365163.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|417826857|ref|ZP_12473430.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|420319296|ref|ZP_14821149.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|335576625|gb|EGM62870.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|391253484|gb|EIQ12657.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
Length = 454
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
Length = 467
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 192/421 (45%), Gaps = 82/421 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G + P+Q I P L RD+ + TG+GKT S+ LP++ L+ RA R R+
Sbjct: 21 GYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F A V L+ L +G G+ + +D
Sbjct: 77 LVLCPTRELAAQVAENFDTYAKHVKLTKALLIG-------------------GVSFKEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 118 AL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER F P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IERIFSLTPFTRQT-LFFSATMAPEIERI 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE--KC 290
L P + T ET + +++ + E K L AL+ G++
Sbjct: 196 TNTFLSGPARIEVARQATASETIEQAVVQVKPSRRDREGSEKRTVLRALIDGEGDKLTNG 255
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
I+F + L +G I G QS R++TL +FREG +++LV+SD
Sbjct: 256 IIFCNRKTDVDICAKSLKKYGYDAAAI---HGDLDQSQRTRTLDSFREGSLRILVASDVA 312
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDE--VKRFKKLLQ 407
RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ T+ +DE + +KL+Q
Sbjct: 313 ARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITICTPRDEKALDAVEKLIQ 372
Query: 408 K 408
K
Sbjct: 373 K 373
>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
2210633]
gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
gi|417321363|ref|ZP_12107903.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
2210633]
gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
Length = 407
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 195/418 (46%), Gaps = 74/418 (17%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+QV
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQV 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQELQSAVDIL 131
D A+A L++ G G+ Y + D+L Q DI+
Sbjct: 92 ADQARALAKNTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +LV+DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLREYIDAER-FDCRAIEWLVLDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L +P A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNEP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
+ +++ + +S L L+ + + E+ IVF + E RL L
Sbjct: 216 -----RERKKIAQWYHRADSAEHKLALLKHIITEQAERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FR+G + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 429
Y+HR GRTARAG+ G +++ + ++ + D I I+ +RP
Sbjct: 328 DVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVKED------IKERFIKEMRP 379
>gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
Length = 407
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 195/421 (46%), Gaps = 74/421 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
V E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA
Sbjct: 29 VQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELA 88
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQELQSAV 128
+QV D A+A L++ G G+ Y D+L Q
Sbjct: 89 MQVADQARAMAKNTKLNIFTITG-------------------GVQYQEHADILATTQ--- 126
Query: 129 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
DI+VATPGRL ++I+A R F + +L++DE DR+L + PTV +L+ NE R+
Sbjct: 127 DIVVATPGRLREYIDAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS---NECRW 179
Query: 189 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 248
T L SA T+ GVE GF +A L +P A++D PL
Sbjct: 180 R-KQTLLFSA-----TLEGKGVE-GF-------------TADLLNEP---AKIDAKSPL- 215
Query: 249 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
R K+ + E KL L + Q+ E+ IVF + E RL L
Sbjct: 216 ----RERKKIAQWYHRAD-DAEHKLALLKHIITEQA---ERTIVFLKTRE---RLAELRA 264
Query: 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
+I G Q R+ + FREG + VL+++D RG+D+ V++V+NYD P
Sbjct: 265 QLESAQIPCSWIQGEMPQDRRNNAISRFREGAVNVLLATDVAARGIDLPDVSHVINYDMP 324
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 428
Y+HR GRTARAG+ G +++ + +++ + D I ++ +R
Sbjct: 325 RTADVYLHRIGRTARAGKKGNAISIVEAHDQPMLERVARYVKED------IKERFVKEMR 378
Query: 429 P 429
P
Sbjct: 379 P 379
>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
Length = 469
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 191/421 (45%), Gaps = 82/421 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I L +D+ + TG+GKT S+ LP++ L+ RA R R+
Sbjct: 21 GYTTPTPIQAGA----IPHALEGKDVLGIAQTGTGKTASFTLPMIHKLARGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F + V L+ L +G G+ + +D
Sbjct: 77 LVLCPTRELAAQVAENFDTYSKHVKLTKALLIG-------------------GVSFKEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
VL + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 118 VL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGIEIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER F P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IERIFSLTPFTRQT-LFFSATMAPEIERI 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE--EKC 290
L P + T ET + + ES K L AL+ + GE
Sbjct: 196 TNTFLSAPARIEVARQATASETITQGAVVFTPSRRDRESSEKRAVLRALIDAEGEACSNA 255
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
I+F + + L +G I G QS R++TL FR+G +++L++SD
Sbjct: 256 IIFCNRKVDVDIVAKSLTKYGYNAAPIH---GDLDQSQRTRTLDGFRDGSVRLLIASDVA 312
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF---KKLLQ 407
RG+D+ V +V N+D P++ + Y+HR GRT RAG+ G+ +T+ + K F +KLLQ
Sbjct: 313 ARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAYTICTPRDEKYFDAVEKLLQ 372
Query: 408 K 408
K
Sbjct: 373 K 373
>gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301]
gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T]
gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401]
gi|384542336|ref|YP_005726398.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|415854782|ref|ZP_11530368.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
2457T]
gi|417706409|ref|ZP_12355465.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
gi|417721811|ref|ZP_12370653.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
gi|417727186|ref|ZP_12375928.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
gi|417732356|ref|ZP_12381025.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
2747-71]
gi|417737649|ref|ZP_12386250.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
4343-70]
gi|417742288|ref|ZP_12390838.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 2930-71]
gi|420330111|ref|ZP_14831808.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-1770]
gi|420340408|ref|ZP_14841932.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-404]
gi|424837260|ref|ZP_18261897.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5a str. M90T]
gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
2457T]
gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
2457T]
gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
4343-70]
gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
2747-71]
gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 2930-71]
gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
gi|383466312|gb|EID61333.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5a str. M90T]
gi|391258157|gb|EIQ17263.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-1770]
gi|391272965|gb|EIQ31794.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-404]
Length = 406
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|422835705|ref|ZP_16883758.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
gi|371611884|gb|EHO00403.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
Length = 454
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 190/407 (46%), Gaps = 78/407 (19%)
Query: 13 VWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTR 66
+ Q+ I P + E RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR
Sbjct: 27 IQQQAI-PAVMEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 86 ELAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRG 124
Query: 127 AVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 125 GVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML------------------- 162
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
G + IRR P R ++ SAT + D LA+ LH
Sbjct: 163 -------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKVLAEKLLH 203
Query: 245 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 304
+PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 204 NPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLA 262
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVN
Sbjct: 263 EQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
Y+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|440790460|gb|ELR11743.1| helicase conserved Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 249
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 267 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326
+IC KPL L+ LL+ ++ + FTSSVESTHRL LL G+ + EYS Q
Sbjct: 2 VICSLAYKPLVLLYLLEMFDFKRTLCFTSSVESTHRLYLLLTLMGQ--TGVAEYSSTLPQ 59
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
R++ ++ F +G I+++++SDAM+RG+D+E V NV+NYD P +IKTY+HR GRTARAG+
Sbjct: 60 RKRTQIIEKFAKGDIKIVIASDAMSRGLDIEDVENVINYDVPPFIKTYVHRVGRTARAGR 119
Query: 387 LGRCFTLLHKDEVKRFKKLLQKADNDS 413
G+ +TLL K E F+ +L+KA++ +
Sbjct: 120 QGKTYTLLLKSEAHHFRSMLKKAEHST 146
>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
Length = 462
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRLVQNEPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V + S +I L+ + G+ +P+ + +L+S
Sbjct: 87 LAAQI---------------GENVREYSRYLDIRSLV----VFGGVSINPQ--MMKLRSG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + + LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDEIKGLAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ Y + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVSQYVHFVDKKRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE K ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDIERLLKK 366
>gi|417539031|ref|ZP_12191433.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
gi|353665295|gb|EHD03472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
Length = 453
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + A + + + + G G+ +P+ + +L+
Sbjct: 87 LAAQIGENVRAYSKYLNIRSLVVFG-------------------GVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|432860541|ref|ZP_20085680.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE146]
gi|431407525|gb|ELG90736.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE146]
Length = 463
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITCQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKNLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPT 65
F A+ +++I L D+ + TG+GKTL++ P++ L ++ + ++ALV+ PT
Sbjct: 24 FETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDKEKKKGVKALVLTPT 83
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ+KD ++ V G SI +I ++++
Sbjct: 84 RELALQIKDELKRLSKYSKTKVLPVYGGESIERQI---------------------KDIK 122
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
S VDI+V TPGR++DHIN R L + +L++DE D +L + + T+++ T + +
Sbjct: 123 SGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQ 181
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
A+ P I++ + KD + +VK L+ +K+AQ H+
Sbjct: 182 TMLFSATMPAP--------IKKLALNYMKKDVEHIAIVKKSLTV------DKIAQ---HY 224
Query: 246 PLFLTTGETRYKL------PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
F + + + E ES + C +K LV +QS G +VE
Sbjct: 225 --FAVKNKDKLEAICRIIDSEEPESAIIFCRTKRGVDELVEAMQSKG--------YNVEG 274
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
H G Q+ R TLK F++ + LV++D RG+DVE +
Sbjct: 275 MH--------------------GDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENI 314
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++V+NYD P ++Y+HR GRT RA + G ++L+ EV +++
Sbjct: 315 SHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360
>gi|386813381|ref|ZP_10100605.1| DEAD/DEAH box helicase [planctomycete KSU-1]
gi|386402878|dbj|GAB63486.1| DEAD/DEAH box helicase [planctomycete KSU-1]
Length = 441
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 172/382 (45%), Gaps = 67/382 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
+D+ + TG+GKT ++ LPI+Q L C+RAL++ PTR+LA Q+ + A+G
Sbjct: 39 QDIMALAQTGTGKTAAFVLPILQRLMQGPRGCVRALIIAPTRELAEQIHE-------AIG 91
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
+GQ + ++ + G+ P+ +Q+L+ +I V+ PGRL+DHI
Sbjct: 92 -----GLGQQTRLRSVT-------VYGGVNMRPQ--VQKLRGKAEIAVSCPGRLLDHIRQ 137
Query: 145 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 204
L L LV+DE DR+ FLP
Sbjct: 138 GT-IDLSRLEVLVLDEADRMFDMG-------------------------FLPD------- 164
Query: 205 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 264
IR+ K P R + SAT+ D +LA LH P T + + +P S
Sbjct: 165 IRKI-----LKHLPAQRQT-LFFSATMPDDIRRLAHDILHTP---ATVQVNHTMPVTTIS 215
Query: 265 YKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
+ L E LK L+ALL E +VFT + HR + + G G
Sbjct: 216 HALYPVEQHLKTPLLMALLNHTDMESVLVFT---RTKHRAKQVAHQLGRAGYSSTSLQGN 272
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
QS R L FR G ++LV++D RG+DV +++V+NYD P Y HR GRT R
Sbjct: 273 LSQSQRQAALNGFRNGSFKILVATDIAARGIDVSRISHVINYDMPDTSDAYTHRIGRTGR 332
Query: 384 AGQLGRCFTLLHKDEVKRFKKL 405
A + G FTL+ +++ + + +
Sbjct: 333 AAKTGDAFTLITREDAQMVRAI 354
>gi|386702440|ref|YP_006166277.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
gi|383393967|gb|AFH18925.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
Length = 454
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ ++FT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLMFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 192/406 (47%), Gaps = 76/406 (18%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRALVVLPT 65
F A+ +++I L D+ + TG+GKTL++ P++ +L N + ++ALV+ PT
Sbjct: 24 FETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISSLCDNEKKKGVKALVLTPT 83
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ+KD ++ V G SI +I ++++
Sbjct: 84 RELALQIKDELKRLSKYSKTKVLPVYGGESIERQI---------------------KDIK 122
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
S VDI+V TPGR++DHIN R L + +L++DE D +L + + T+++ T + +
Sbjct: 123 SGVDIVVGTPGRILDHIN-RRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTPEEKQ 181
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
A+ +P+A I++ + +D + ++K L+ +K+AQ H+
Sbjct: 182 TMLFSAT--MPAA------IKKLALNYMKEDVEHIAILKKSLTV------DKIAQ---HY 224
Query: 246 PLFLTTGETRYKL------PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
F + + + E ES + C +K LV +QS G +VE
Sbjct: 225 --FAVKNKDKLEAICRIIDSEEPESAIIFCRTKRGVDELVEAMQSKG--------YNVEG 274
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
H G Q+ R TLK F++ + LV++D RG+DVE +
Sbjct: 275 MH--------------------GDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENI 314
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++V+NYD P ++Y+HR GRT RA + G ++L+ EV +++
Sbjct: 315 SHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360
>gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
Length = 466
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 192/411 (46%), Gaps = 76/411 (18%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RA-VRCLRALV 61
S+ + + + TI L ++D+ + TG+GKT S+ LP++ L RA R R L+
Sbjct: 23 SAGYTIPTPIQSRTIPHILQKKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARIPRTLI 82
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA QVK+ F L+V L +G G+ ++ +D
Sbjct: 83 LEPTRELAAQVKENFDKYGVNHNLNVALLIG-------------------GVSFEHQD-- 121
Query: 122 QELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 122 RKLERGADVLIATPGRLLDHFE--RGKLLLVGVEILVIDEADRMLNMG------------ 167
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
F+P VER K P+ R + SAT+ + +L +
Sbjct: 168 -------------FIPD------------VERICKVTPFTRQT-LFFSATMAPEIAQLTK 201
Query: 241 LDLHHPLFLTTGE---TRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEE--KCIVFT 294
LH P+++ E T + +RL +S C+ K L L+Q+ G+E I+F
Sbjct: 202 QFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKA---VLKELIQNEGDELKNAIIFC 258
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ + + L + + + G Q R+ TL +F+ K +L++SD RG+
Sbjct: 259 NRKKD---ISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLIASDVAARGL 315
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
D+ V++V NYD P + + YIHR GRT RA + G+ FT++ K + K + +
Sbjct: 316 DIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYIRAI 366
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 189/415 (45%), Gaps = 77/415 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN----RAVRC 56
G S+ P+Q P + E +DL ++ TG+GKT + LPI+ L++ + R
Sbjct: 20 GYSTPTPIQAKAI-----PLVLEGKDLMASAQTGTGKTAGFTLPILHKLASAGRGQGRRP 74
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
RALV+ PTR+LA QV + A V L + G G+
Sbjct: 75 PRALVLTPTRELAAQVAESIATYGKYVPLRTAVVFG-------------------GVKIQ 115
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
P+ + +LQ VD+LVATPGRL+DH+ R L + LV+DE DR+L
Sbjct: 116 PQ--IHKLQRGVDVLVATPGRLLDHV-GQRTVDLSQVEVLVLDEADRML----------- 161
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
G + IRR + P R M SAT + +
Sbjct: 162 ---------------------DMGFIHDIRRL-----LNELPAERQTLM-FSATFSNEIK 194
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
KLA L P+ + R +++ + + K L ++ ++ +VFT +
Sbjct: 195 KLADDILRDPVLVEVA-ARNSTADKISQVVHPVDRQRKRELLSYMIGQHNWQQVLVFTRT 253
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+RL L G +K G + Q R++ L+ F++G ++VLV++D RG+D+
Sbjct: 254 KHGANRLAEQLERDG---LKTAAIHGNKSQGARTRALQDFKKGAVRVLVATDIAARGLDI 310
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ + +VVN++ P + Y+HR GRT RAG G+ +L+ +E ++ ++LL++
Sbjct: 311 DHLPHVVNFELPNVSEDYVHRIGRTGRAGNTGQAVSLVSSEEYPLLRSIERLLKQ 365
>gi|395844018|ref|XP_003794763.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 isoform 1
[Otolemur garnettii]
Length = 869
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 188/423 (44%), Gaps = 77/423 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQRQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 129
Q +V + S GL +G + E + + ++
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKQEAERI----------------------NNIN 192
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
ILV TPGRL+ H++ T F +L LV+DE DR+L + + ++ EN
Sbjct: 193 ILVCTPGRLLQHMDETVSFHATNLQMLVLDEADRILDMGFADTMNAII-------EN--- 242
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
LP +L + SAT T+ LA+L L P ++
Sbjct: 243 -----LPRKRQTL-----------------------LFSATQTKSVKDLARLSLKDPEYV 274
Query: 250 TTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
E +Y P LE ++CE + K L + L+S ++K IVF SS + L +
Sbjct: 275 WVHEKAKYSTPATLEQNYVVCELQQKISVLFSFLRSHLKKKSIVFFSSCKEVQYLYRV-- 332
Query: 309 HFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
F LR + I G Q+Q R + F + VL ++D RG+D VN V+ +D
Sbjct: 333 -FCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFD 391
Query: 367 KPAYIKTYIHRAGRTARAGQLGRC-FTLLHKDEVKRFKKLLQKADNDSCPIHSI---PSS 422
P TYIHRAGRTAR + G LL +E ++LLQK P+ I P
Sbjct: 392 CPEDANTYIHRAGRTARYKEDGEALLILLPSEEKAMLQQLLQK----KVPVKEIKINPEK 447
Query: 423 LIE 425
L++
Sbjct: 448 LVD 450
>gi|358396993|gb|EHK46368.1| hypothetical protein TRIATDRAFT_218284 [Trichoderma atroviride IMI
206040]
Length = 863
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 150/310 (48%), Gaps = 70/310 (22%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G + F VQ A + DL +++ TGSGKTL+YALPIV+ LSN + LR LV
Sbjct: 307 GYTEAFAVQTAALPLLLPTNKQPGDLLVSAATGSGKTLAYALPIVRDLSNSVITRLRCLV 366
Query: 62 VLPTRDLALQVKDVFAAIAPAVG------LSVGLAVGQSSIADEIS-----------ELI 104
VLPTR+L Q ++VF A A + +G+A+G S+A E E
Sbjct: 367 VLPTRELVKQAQEVFELCAKAYEGEDRKRVRIGIAIGNQSLASEQDILVTKETRYDPETY 426
Query: 105 KRPKLEAGICYDPEDVLQEL-----------------------QSAVDILVATPGRLMDH 141
K+ + EA E+ L EL S VDIL+ TPGRL++H
Sbjct: 427 KQLEEEASSKSTSEEDLDELLTSSDTRRTNPRIGPWQGQVIDFHSKVDILICTPGRLVEH 486
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
I+ T GFTL ++ +LVVDE D+LL +++Q WL VL F + +G+
Sbjct: 487 IDQTPGFTLSYIRWLVVDEADKLLAQSFQGWLDVVL--------------DKFKVNHYGA 532
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP--LFLTTGE----TR 255
R F D PY + K++LSATLT+D + L QL L P + L +G
Sbjct: 533 ----------RDFPDMPYSGVRKILLSATLTRDLSLLNQLALKRPKLIVLESGSDVQVAE 582
Query: 256 YKLPERLESY 265
+ LP+ L Y
Sbjct: 583 HSLPDLLREY 592
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 289 KCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFR--EGKIQVLV 345
+ ++FT S E+ RL LL + L +I + S+R KTL+AF +++++
Sbjct: 698 RALIFTKSNEAALRLSRLLTILDKSLATQISTLTSTTPTSIRRKTLRAFTTPSSPLRLII 757
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+SD + RG+D+ + +VVNYD P + Y+HR GRTARAG+ G +TL+ E F
Sbjct: 758 ASDLVARGIDIPKLPHVVNYDLPPSVAGYVHRVGRTARAGRTGCAWTLVGDGESGWF 814
>gi|196002119|ref|XP_002110927.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
gi|190586878|gb|EDV26931.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
Length = 435
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 178/402 (44%), Gaps = 70/402 (17%)
Query: 15 QETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73
QE P + + CI + TGSGKT ++ALPI+Q L+ + AL++ PTR+LA Q+
Sbjct: 32 QEKCIPPILQGQNCIGCAKTGSGKTAAFALPILQNLAKEPF-GIYALILTPTRELAFQLA 90
Query: 74 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 133
D F A +G+ + +G I + L K+P I++A
Sbjct: 91 DQFRAFGKPIGMRDAIVIGGLDIISQSIALSKKPH---------------------IVIA 129
Query: 134 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 193
TPGRL D I+ + +LV+DE DRLL ++ L + ++ D + T
Sbjct: 130 TPGRLADLIDNDSKVHFSKIKFLVLDEADRLLEASFGPDLGKIFEILPEDRQ-------T 182
Query: 194 FLPSAFGSLKTIRRCGVERGFKDKPYP-RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
L SA + R E KP+ M +SAT+ QLD H+
Sbjct: 183 LLFSATMTNAMAR--AQEVAASKKPFIYEDTDMKISATVE-------QLDQHY------- 226
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE-------KCIVFTSSVE-STHRLC 304
L+ + +K Y V L++ L E ++FTS+ S R C
Sbjct: 227 --------------LLMPAVVKDCYFVYLIKQLSLELEKNPRWNMMIFTSTYNFSNRRSC 272
Query: 305 TLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
+L L L Q R +L F+ G +++LV++D +RG+D+ V VV
Sbjct: 273 QILAIMLSRLEFSCAALHSLMPQRQRLGSLARFKNGLLKILVATDVASRGLDIPTVEAVV 332
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
NY+ P YIHR GRTARAG+ G TL+ + +V R +
Sbjct: 333 NYNVPLSADDYIHRVGRTARAGKKGMAVTLMTQYDVNRIHNI 374
>gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116]
gi|388600479|ref|ZP_10158875.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii DS40M4]
gi|424032046|ref|ZP_17771467.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-01]
gi|444427731|ref|ZP_21223102.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116]
gi|408876458|gb|EKM15575.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-01]
gi|444239029|gb|ELU50609.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 407
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 188/399 (47%), Gaps = 74/399 (18%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+QV
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQV 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQELQSAVDIL 131
D A+A L++ G G+ Y + D+L Q DI+
Sbjct: 92 ADQARALAKNTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +L++DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLREYIDAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L +P A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNEP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R K+ + E KL L + Q+ E+ IVF + E RL L
Sbjct: 216 -RERKKIAQWYHRAD-DAEHKLALLKHIITEQA---ERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FREG + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAISRFREGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHK------DEVKRFKK 404
Y+HR GRTARAG+ G +++ D V R+ K
Sbjct: 328 DVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366
>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
Length = 429
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 189/406 (46%), Gaps = 68/406 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F A+ +++I L D+ + TGSGKTLS+A I+Q ++ + ++AL++ PTR
Sbjct: 49 FESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSFASGILQ--NSEKGKGIQALILTPTR 106
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA QV + + L++ G I +I EL
Sbjct: 107 ELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKEL----------------------K 144
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
+++V TPGRL+DHI + L ++ LV+DE D + +
Sbjct: 145 NAEVVVGTPGRLLDHI-SRNTIKLNNVKTLVLDEADHMFDMGF----------------- 186
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
+ VE+ K+ P R ++ SAT+T+D +L++ + +P
Sbjct: 187 --------------------KVDVEKIIKECPQNRQT-LLFSATITKDIVRLSRKYMENP 225
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ ++T Y P++L + +K LV LLQ+ +VF ++ +T ++
Sbjct: 226 VRVST--ESYIDPQKLNQVVYKVQDDMKLSLLVYLLQNEKSNLGMVFCNTKRNTDKVAKN 283
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L + I + GL Q+ R++ L+ F G I VLV +D RG+D++GV++V NYD
Sbjct: 284 LRKSSINAVAI--HGGLT-QNERTRILEKFHSGNIGVLVCTDVAGRGLDIQGVSHVYNYD 340
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
P K YIHR GRTARAG G+ +L K++ F +L+ D D
Sbjct: 341 IPRESKQYIHRIGRTARAGTEGKAINILSKNDHANFMSVLKDNDVD 386
>gi|451940595|ref|YP_007461233.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
australis Aust/NH1]
gi|451899982|gb|AGF74445.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
australis Aust/NH1]
Length = 468
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 191/400 (47%), Gaps = 70/400 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLP 64
+ + + ETI L ++D+ + TG+GKT S+ LP++ L RA R R L+++P
Sbjct: 26 YTIPTPIQSETIPHVLQKKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLILVP 85
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
TR+LA QVK+ F L+V L +G G+ ++ +D ++L
Sbjct: 86 TRELAAQVKENFDKYGMNHRLNVALLIG-------------------GVSFEHQD--RKL 124
Query: 125 QSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 125 ERGTDVLIATPGRLLDHFE--RGKLLLVGVEILVIDEADRMLDMG--------------- 167
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
F+P +ER + P+ R + SAT+ + KL + L
Sbjct: 168 ----------FIPD------------IERICRLTPFTRQT-LFFSATMAPEIAKLTEQFL 204
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR- 302
H P+++ T+ + R + +L+ +S KP A+L+ L ++ +++ +R
Sbjct: 205 HSPVYIEI--TKEFVTARTITQRLV-KSGSKPWDKRAILRGLIHDEGDKLKNAIIFCNRK 261
Query: 303 --LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
+ L + + G Q R+ TL F++GKI +L++SD RG+D+ V+
Sbjct: 262 KDISELFRSLVKYNFSVGALHGDMDQHTRTSTLANFKDGKITLLIASDVAARGLDIPAVS 321
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
++ NYD P + + YIHR GRT RA + G+ FT++ + + K
Sbjct: 322 HIFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTQADEK 361
>gi|422748197|ref|ZP_16802110.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|433011473|ref|ZP_20199877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|433162588|ref|ZP_20347347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|431518088|gb|ELH95608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|431691258|gb|ELJ56718.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
Length = 453
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +R L++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRTLILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|350530261|ref|ZP_08909202.1| ATP-dependent RNA helicase SrmB [Vibrio rotiferianus DAT722]
Length = 407
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 188/399 (47%), Gaps = 74/399 (18%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+Q+
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQI 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQELQSAVDIL 131
D A+A L++ G G+ Y + D+L Q DI+
Sbjct: 92 ADQARALAKNTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +LV+DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLREYIDAER-FDCRAIEWLVLDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L +P A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNEP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R K+ + E KL L + Q+ E+ IVF + E RL L
Sbjct: 216 -RERKKIAQWYHRAD-DAEHKLALLKHIITEQA---ERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FREG + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAIARFREGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHK------DEVKRFKK 404
Y+HR GRTARAG+ G +++ D V R+ K
Sbjct: 328 DVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366
>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
gi|424047884|ref|ZP_17785440.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-03]
gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
gi|408883194|gb|EKM21981.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-03]
Length = 407
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 188/399 (47%), Gaps = 74/399 (18%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+QV
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQV 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQELQSAVDIL 131
D A+A L++ G G+ Y + D+L Q DI+
Sbjct: 92 ADQARALAKNTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +L++DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLREYIDAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L +P A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNEP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R K+ + E KL L + Q+ E+ IVF + E RL L
Sbjct: 216 -RERKKIAQWYHRAD-DAEHKLALLKHIITEQA---ERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FREG + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAIARFREGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHK------DEVKRFKK 404
Y+HR GRTARAG+ G +++ D V R+ K
Sbjct: 328 DVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366
>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|452120973|ref|YP_007471221.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|451909977|gb|AGF81783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 453
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-----TLSNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQLHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|302682610|ref|XP_003030986.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
gi|300104678|gb|EFI96083.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
Length = 775
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 181/406 (44%), Gaps = 72/406 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAP 81
+D+ + TGSGKTL++ +P+++ L R L AL++ PTR+LA+Q+ +V +I P
Sbjct: 90 KDVLGAARTGSGKTLAFLIPVLEILYRRKWGPADGLGALIISPTRELAVQIFEVLRSIGP 149
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G ++ DE L++ ++ILVATPGRL+ H
Sbjct: 150 FHSFSAGLVIGGKNLKDERDRLVR----------------------MNILVATPGRLLQH 187
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T GF ++L LV+DE DR+L + L +L G
Sbjct: 188 MDQTYGFECDNLQVLVLDEADRILDMGFAKTLSALL----------------------GH 225
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK---- 257
L R+ ++ SAT T + LA+L L P F+ T E
Sbjct: 226 LPKSRQT----------------LLFSATQTDSVSDLARLSLTDPAFIATKEAEESHTAT 269
Query: 258 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--I 315
P+ LE + IC K L + +++ + K +VF SS + ++ + F +++ +
Sbjct: 270 TPKNLEQHYAICTLDQKLDLLWSFIKTHLQSKTLVFLSSCK---QVRFVYETFCKMQPGV 326
Query: 316 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 375
+ G Q+Q R F + VL ++D RG+D V+ V+ D P ++TYI
Sbjct: 327 SLLHLHGKQKQMTRLAMYDRFTKMSHVVLFATDIAARGLDFPAVDWVLQLDAPEDVETYI 386
Query: 376 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
HR GRTAR G+ L E + K D D I PS
Sbjct: 387 HRVGRTARYESKGKGLLFLMPSEEEGMLAAFAKRDIDIKKIKIRPS 432
>gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|415824802|ref|ZP_11513036.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|417193204|ref|ZP_12015051.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|417209507|ref|ZP_12020791.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|417590515|ref|ZP_12241230.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|419195910|ref|ZP_13739314.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|419202149|ref|ZP_13745371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|419887299|ref|ZP_14407895.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|419894549|ref|ZP_14414445.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|420088816|ref|ZP_14600676.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|420094200|ref|ZP_14605802.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|424769471|ref|ZP_18196698.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|345344461|gb|EGW76828.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|378051718|gb|EHW14033.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|378055793|gb|EHW18054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|386190385|gb|EIH79133.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|386196132|gb|EIH90358.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|388363164|gb|EIL27104.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|388363386|gb|EIL27315.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|394389606|gb|EJE66748.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|394396885|gb|EJE73216.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|421944120|gb|EKU01382.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
Length = 454
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDICVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|390454552|ref|ZP_10240080.1| ATP-dependent RNA helicase dbpA [Paenibacillus peoriae KCTC 3763]
Length = 481
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 180/394 (45%), Gaps = 73/394 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V E I L ++DL + S TGSGKT +Y +P+ + L + +AL++ PTR+LALQV
Sbjct: 30 VQTEVIPVALVKKDLVVKSQTGSGKTAAYGIPLCE-LVDWNENKPQALILTPTRELALQV 88
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ I + V G+ + +EL +R I+V
Sbjct: 89 KEDITNIGRFKRIKVTSVYGKHPFHIQKAELKQR---------------------THIVV 127
Query: 133 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
TPGR++DHI RG +LE + YLV+DE D +L + + +++Q SD
Sbjct: 128 GTPGRVLDHIE--RGTLSLERMAYLVIDEADEMLNMGFIEQVQSIIQALPSDR------- 178
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL-- 249
V M+ SAT D +L++ + HP+ +
Sbjct: 179 -------------------------------VTMLFSATFPDDVAQLSRKYMDHPVNIEI 207
Query: 250 -TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
TG T + L +++ KL L + ++++ + CI+F + E+ + L
Sbjct: 208 KATGITTATIDHSL--IQVMETDKLLLLQNLLIVEN--PDSCIIFCRTQEN---VDILFR 260
Query: 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
+L G Q R + + AFR G+ + L+++D RG+D+ + +V+NYD P
Sbjct: 261 ELADLDYPCDRIHGGMEQEERFEVMNAFRRGQFRYLIATDVAARGIDITNITHVINYDVP 320
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
++Y+HR GRT RAG+ G+ TL+ + KR
Sbjct: 321 LEKESYVHRTGRTGRAGKTGKAITLVTPKDSKRL 354
>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
Length = 447
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L ++ R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLVTHQPHGKSRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+L+ATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKSLAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|387903185|ref|YP_006333524.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
gi|387578077|gb|AFJ86793.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
Length = 486
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRGAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + V L + G SI P+++A
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSI---------NPQIDA--- 122
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 123 ---------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRML--------- 163
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K PR ++ SAT + +
Sbjct: 164 -----------------------DMGFIHDIKRVLA------KLPPRRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPQEVIAGFEP 379
>gi|224024842|ref|ZP_03643208.1| hypothetical protein BACCOPRO_01573 [Bacteroides coprophilus DSM
18228]
gi|224018077|gb|EEF76076.1| hypothetical protein BACCOPRO_01573 [Bacteroides coprophilus DSM
18228]
Length = 445
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 178/374 (47%), Gaps = 69/374 (18%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
DL + SPTGSGKTL+Y LP+V +L V ++A+V++P+R+LALQ++ VF A+ G
Sbjct: 38 DLILLSPTGSGKTLAYLLPLVSSLKE-GVDGVQAVVLVPSRELALQIEQVFKAM--GTGW 94
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
+V G RP +E ++ ++ +V ++ TPGR+ DH++
Sbjct: 95 NVMSCYG------------GRPAMEE------HRTMKGIRPSV--IIGTPGRMNDHLD-K 133
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
+ F + LV+DE D+ L +Q + V+ G L +
Sbjct: 134 QNFDASTVRLLVIDEFDKCLEFGFQEEMAEVI----------------------GKLPAL 171
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-FLTTGETRYKLPERLES 264
RR + +LSAT T++ + L+ L FL E ++ ERL
Sbjct: 172 RR----------------RFLLSATDTEEIPRFTGLNQTVKLDFLNPEE---QVSERLHI 212
Query: 265 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 324
YK+ +K K L LL SLG+ +VF + ES R+ L+ ++ + + G
Sbjct: 213 YKVCSPAKDKLETLYKLLCSLGDASTLVFCNHRESVDRVMKYLH---SQKVYCEAFHGGM 269
Query: 325 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
Q R + L FR G +L+S+D RG+D+ + N+V+Y P +IHR GRTAR
Sbjct: 270 EQDDRERALYKFRNGSCHILISTDLAARGLDIPEIRNIVHYHLPVGEDGFIHRNGRTARW 329
Query: 385 GQLGRCFTLLHKDE 398
G + +LH +E
Sbjct: 330 EAEGSAYLILHSEE 343
>gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
Length = 453
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRVLAKLPAKRQ------NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417412622|ref|ZP_12158261.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|353626248|gb|EHC74832.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
Length = 406
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAH-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Carnobacterium sp. AT7]
gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Carnobacterium sp. AT7]
Length = 483
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 112/420 (26%), Positives = 196/420 (46%), Gaps = 66/420 (15%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V +E I L +D+ + S TGSGKT+SY +P+ +T+ + + LV++PTR+LA+QV
Sbjct: 31 VQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLCETVDWEENKP-QVLVLVPTRELAIQV 89
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ I + G++S + SEL ++ I+V
Sbjct: 90 KEDLMNIGRLKRVKATAVYGKASFDTQKSELKQKSH---------------------IVV 128
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
TPGR++DH+ F +E + LV+DE D +L + + ++
Sbjct: 129 GTPGRVLDHLQKGT-FKVEKIDCLVLDEADEMLNMGFADQVEAII--------------- 172
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
FLP+ +L P+ ++ + S + QD + + T
Sbjct: 173 NFLPAERQTL-----------LFSATMPKEIERIASFYMKQD---------KQSIVIET- 211
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
T P+ ++S + E K K L+ LL + C++F ++ E+ + L T LN G
Sbjct: 212 -TELSKPKIIQSSVKVQEDK-KEQQLLDLLTVENADSCMIFCNTQEAVNNLYTFLNKAG- 268
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ I + G Q R + FR+G+ + LV++D RG+D+E V +VVN+D P +
Sbjct: 269 --LPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVATDVAARGIDIENVTHVVNFDVPVEKE 326
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS-LIESLRPVY 431
+++HR GRT RAG+ G TL+ E K + ++ A + S+P++ L++S + +
Sbjct: 327 SFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVKAYAGQTVIEV-SLPTTRLVQSHKTSF 385
>gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|418790452|ref|ZP_13346227.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418791862|ref|ZP_13347613.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418798926|ref|ZP_13354599.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418808339|ref|ZP_13363894.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418812496|ref|ZP_13368019.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418815866|ref|ZP_13371361.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418820078|ref|ZP_13375513.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418833247|ref|ZP_13388177.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418835168|ref|ZP_13390064.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842083|ref|ZP_13396896.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418843195|ref|ZP_13397994.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418850126|ref|ZP_13404845.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418853485|ref|ZP_13408174.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859588|ref|ZP_13414190.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418861916|ref|ZP_13416466.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869078|ref|ZP_13423519.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|392758015|gb|EJA14892.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392765568|gb|EJA22354.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392769395|gb|EJA26128.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392775916|gb|EJA32606.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392776527|gb|EJA33214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392791233|gb|EJA47723.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392793094|gb|EJA49539.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392795819|gb|EJA52170.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392803986|gb|EJA60163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392807408|gb|EJA63479.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392817333|gb|EJA73248.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392819332|gb|EJA75204.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392826746|gb|EJA82467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392829782|gb|EJA85443.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392837155|gb|EJA92726.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392837768|gb|EJA93338.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 453
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 184/404 (45%), Gaps = 72/404 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPT 65
F A+ +++I L D+ + TG+GKTL++ P++ L ++ + ++ALV+ PT
Sbjct: 24 FETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDKEKKKGVKALVLTPT 83
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ+KD ++ V G SI +I ++++
Sbjct: 84 RELALQIKDELKRLSKYSKTKVLPVYGGESIERQI---------------------KDIK 122
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
S VDI+V TPGR++DHIN R L + +LV+DE D +L + + T+++ T + +
Sbjct: 123 SGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMESTSEEKQ 181
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA----QL 241
M+ SAT+ + KLA +
Sbjct: 182 T--------------------------------------MLFSATMPEPIKKLALNYMKK 203
Query: 242 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301
D+ H L T K+ + + K +K K L ++ S E I+F +
Sbjct: 204 DVEHIAILKKSLTVDKIAQNYFAVK----NKDKLEALCRIIDSEEPESAIIFCRTKRGVD 259
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
L + G ++ G Q+ R TLK F++ + LV++D RG+DVE +++
Sbjct: 260 ELVEAMQSKG---YNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISH 316
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
V+NYD P ++Y+HR GRT RA + G ++L+ EV +++
Sbjct: 317 VINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360
>gi|420334965|ref|ZP_14836583.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-315]
gi|391266947|gb|EIQ25888.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-315]
Length = 449
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 81
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 82 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 120
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 121 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 157
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 158 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 199
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 200 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 258
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ I+VLV++D RG+D+E + +VVNY
Sbjct: 259 QLNKDG---IRSAAIHGNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNY 315
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 316 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 361
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/406 (26%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPT 65
F A+ +++I L D+ + TG+GKTL++ P++ L ++ + ++ALV+ PT
Sbjct: 24 FETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDKEKKKGVKALVLTPT 83
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ+KD ++ V G SI +I ++++
Sbjct: 84 RELALQIKDELKRLSKYSKTKVLPVYGGESIERQI---------------------KDIK 122
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
S VDI+V TPGR++DHIN R L + +L++DE D +L + + T+++ T + +
Sbjct: 123 SGVDIVVGTPGRILDHIN-RRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQ 181
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
A+ P I++ + KD + ++K L+ +K+AQ H+
Sbjct: 182 TMLFSATMPAP--------IKKLALNYMKKDVEHIAILKKSLTV------DKIAQ---HY 224
Query: 246 PLFLTTGETRYKL------PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
F + + + E ES + C +K LV +QS G +VE
Sbjct: 225 --FAVKNKDKLEAICRIIDSEEPESAIIFCRTKRGVDELVEAMQSKG--------YNVEG 274
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
H G Q+ R TLK F++ + LV++D RG+DVE +
Sbjct: 275 MH--------------------GDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENI 314
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++V+NYD P ++Y+HR GRT RA + G ++L+ EV +++
Sbjct: 315 SHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360
>gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375122870|ref|ZP_09768034.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|445130786|ref|ZP_21381494.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|444851544|gb|ELX76633.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
Length = 453
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHNLLRDIEKLLKK 366
>gi|416771944|ref|ZP_11873090.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 404
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKR-QNLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|62179387|ref|YP_215804.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|375113712|ref|ZP_09758882.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62127020|gb|AAX64723.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322713858|gb|EFZ05429.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 453
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417700880|ref|ZP_12350014.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
Length = 406
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVN+
Sbjct: 264 QLNKDG---IRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNH 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|440761276|ref|ZP_20940363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440766050|ref|ZP_20945053.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771501|ref|ZP_20950417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|436421208|gb|ELP19056.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436423881|gb|ELP21678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436424985|gb|ELP22737.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
Length = 453
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417509372|ref|ZP_12174654.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
gi|353649195|gb|EHC91885.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
Length = 444
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRVLAKLPAKRQ------NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|437843415|ref|ZP_20846970.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435295547|gb|ELO71998.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 455
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|374978841|ref|ZP_09720183.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378444299|ref|YP_005231931.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|378449185|ref|YP_005236544.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378698757|ref|YP_005180714.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|378983416|ref|YP_005246571.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378988204|ref|YP_005251368.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379700028|ref|YP_005241756.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383495604|ref|YP_005396293.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422024961|ref|ZP_16371428.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422029986|ref|ZP_16376224.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427547193|ref|ZP_18926740.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427563240|ref|ZP_18931505.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427598123|ref|ZP_18940041.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427628938|ref|ZP_18946004.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427652236|ref|ZP_18950770.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427660201|ref|ZP_18955720.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427665329|ref|ZP_18960478.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157405|emb|CBW16894.1| hypothetical ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|380462425|gb|AFD57828.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. 798]
gi|414022550|gb|EKT06027.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414022674|gb|EKT06146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414024129|gb|EKT07524.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414026435|gb|EKT09705.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414036371|gb|EKT19205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414050948|gb|EKT33096.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414052210|gb|EKT34273.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414056455|gb|EKT38280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414061189|gb|EKT42625.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
Length = 454
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|427604256|ref|ZP_18941103.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414041027|gb|EKT23616.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
Length = 453
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|445268473|ref|ZP_21410195.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
gi|444888135|gb|ELY11755.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
Length = 452
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRVLAKLPAKRQ------NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|395531966|ref|XP_003768044.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Sarcophilus
harrisii]
Length = 618
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 190/429 (44%), Gaps = 71/429 (16%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G + P+Q+ + I L R+L ++PTGSGKTL++++PI+ L + RAL+
Sbjct: 193 GFQTPTPIQM----QAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALI 248
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA Q I+ G + + + ++++A + + P+
Sbjct: 249 ISPTRELASQTHRELVRISEGTGFRIHM-IHKAAVAAK--------------KFGPKS-- 291
Query: 122 QELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
DILV TP RL+ + G L+++ +LVVDE+D+L
Sbjct: 292 ---SKKFDILVTTPNRLIYLLKQDPPGIDLKNVEWLVVDESDKLF--------------- 333
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
D + F D F+ A S K +RR + SAT D + +
Sbjct: 334 -EDGKTGFRDQLAFIFLACTSHK-VRRA-----------------MFSATFAHDVEQWCK 374
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVES 299
L+L + + ++ G R E +E L S+ K L + L++ +VF S+E
Sbjct: 375 LNLDNVISISIG-ARNSAAETVEQELLFVGSETGKLLAMRDLIKKGFHPPVLVFVQSIER 433
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L L + G I + + Q R T+ +FR GKI VL+ + + RG+D +GV
Sbjct: 434 AKELFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 490
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI--- 416
N V+NYD P YIHR GRT RAG G+ T +D+ + + CP+
Sbjct: 491 NLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEY 550
Query: 417 ----HSIPS 421
H +PS
Sbjct: 551 IRSFHKLPS 559
>gi|378955820|ref|YP_005213307.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|438146852|ref|ZP_20876018.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|357206431|gb|AET54477.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|434938585|gb|ELL45535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
Length = 453
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRVLAKLPAKRQ------NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|375000580|ref|ZP_09724920.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375118271|ref|ZP_09763438.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|386590728|ref|YP_006087128.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|416421869|ref|ZP_11689773.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416431386|ref|ZP_11695540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416441634|ref|ZP_11701846.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416445410|ref|ZP_11704299.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416454128|ref|ZP_11710131.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459340|ref|ZP_11713849.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416467278|ref|ZP_11717295.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416481043|ref|ZP_11723099.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416500446|ref|ZP_11731517.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416505189|ref|ZP_11733623.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416523109|ref|ZP_11740856.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416530487|ref|ZP_11745013.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416537766|ref|ZP_11749062.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416546393|ref|ZP_11753879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416553658|ref|ZP_11757826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416560250|ref|ZP_11761079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416570320|ref|ZP_11765981.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416578494|ref|ZP_11770614.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416582432|ref|ZP_11772706.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416593743|ref|ZP_11780149.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416599470|ref|ZP_11783704.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416604972|ref|ZP_11786593.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416612620|ref|ZP_11791645.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416620697|ref|ZP_11795886.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416629582|ref|ZP_11800206.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416643586|ref|ZP_11806084.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416650093|ref|ZP_11810201.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416654173|ref|ZP_11812137.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416669875|ref|ZP_11819718.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416679932|ref|ZP_11823189.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416690487|ref|ZP_11825906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416707553|ref|ZP_11832651.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416714851|ref|ZP_11838169.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416716629|ref|ZP_11838976.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416724879|ref|ZP_11845263.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416730351|ref|ZP_11848602.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416740514|ref|ZP_11854470.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416756557|ref|ZP_11862643.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416760825|ref|ZP_11865033.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|417371944|ref|ZP_12142365.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|417454938|ref|ZP_12163427.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|418483709|ref|ZP_13052715.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418491688|ref|ZP_13058196.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418494018|ref|ZP_13060478.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418500025|ref|ZP_13066424.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418501847|ref|ZP_13068223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418509664|ref|ZP_13075956.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418510917|ref|ZP_13077187.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418526685|ref|ZP_13092654.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418763606|ref|ZP_13319721.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418765207|ref|ZP_13321297.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418769492|ref|ZP_13325522.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418773422|ref|ZP_13329406.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418780105|ref|ZP_13335996.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418783033|ref|ZP_13338884.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418803660|ref|ZP_13359278.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|419727968|ref|ZP_14254936.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419736759|ref|ZP_14263585.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419738617|ref|ZP_14265377.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419742538|ref|ZP_14269211.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419747650|ref|ZP_14274154.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419790882|ref|ZP_14316548.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419794538|ref|ZP_14320150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421357993|ref|ZP_15808300.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421364779|ref|ZP_15815010.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421367454|ref|ZP_15817647.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370361|ref|ZP_15820527.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421377806|ref|ZP_15827896.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421382364|ref|ZP_15832411.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421386100|ref|ZP_15836115.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421392135|ref|ZP_15842096.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421393025|ref|ZP_15842972.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421398933|ref|ZP_15848837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404842|ref|ZP_15854678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421407977|ref|ZP_15857783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421411212|ref|ZP_15860980.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421419078|ref|ZP_15868774.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421421358|ref|ZP_15871026.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421424345|ref|ZP_15873988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421432250|ref|ZP_15881826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421434591|ref|ZP_15884140.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438819|ref|ZP_15888313.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421446374|ref|ZP_15895786.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421450861|ref|ZP_15900231.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421569210|ref|ZP_16014914.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573437|ref|ZP_16019073.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421580106|ref|ZP_16025667.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421584754|ref|ZP_16030261.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|436591026|ref|ZP_20512039.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436667097|ref|ZP_20517358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436801822|ref|ZP_20525138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436811759|ref|ZP_20530639.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436816131|ref|ZP_20533682.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436839279|ref|ZP_20537599.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851726|ref|ZP_20542325.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858488|ref|ZP_20547008.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865664|ref|ZP_20551631.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436875162|ref|ZP_20557069.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436879149|ref|ZP_20559540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436884969|ref|ZP_20562367.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896784|ref|ZP_20569540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436904121|ref|ZP_20574222.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436911286|ref|ZP_20577115.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436918637|ref|ZP_20581783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436930853|ref|ZP_20589078.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436933091|ref|ZP_20589530.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436942428|ref|ZP_20595374.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436947983|ref|ZP_20598389.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436963604|ref|ZP_20605881.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436969786|ref|ZP_20608701.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436977489|ref|ZP_20612267.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436995584|ref|ZP_20619309.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437005335|ref|ZP_20622427.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437022924|ref|ZP_20628789.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437032228|ref|ZP_20631872.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437041852|ref|ZP_20635757.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050076|ref|ZP_20640357.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437055377|ref|ZP_20643520.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437068567|ref|ZP_20650698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437077641|ref|ZP_20655540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437086984|ref|ZP_20660993.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437088622|ref|ZP_20661659.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437108580|ref|ZP_20667547.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437124198|ref|ZP_20673269.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437134169|ref|ZP_20678593.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437138041|ref|ZP_20680771.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437147658|ref|ZP_20686940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437156209|ref|ZP_20692134.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437161668|ref|ZP_20695604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437166399|ref|ZP_20698052.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437179723|ref|ZP_20705574.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184726|ref|ZP_20708577.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437207742|ref|ZP_20712669.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437260816|ref|ZP_20717886.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437267035|ref|ZP_20721001.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437276394|ref|ZP_20726403.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437300726|ref|ZP_20733150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437311289|ref|ZP_20735884.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437320056|ref|ZP_20738223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437336531|ref|ZP_20743138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437420194|ref|ZP_20754571.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437447978|ref|ZP_20759146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437467994|ref|ZP_20764636.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437473851|ref|ZP_20765958.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437489679|ref|ZP_20770464.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437512856|ref|ZP_20777411.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437528012|ref|ZP_20780039.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437556151|ref|ZP_20784988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437579691|ref|ZP_20791741.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437596113|ref|ZP_20796163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437607079|ref|ZP_20800097.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437621948|ref|ZP_20804458.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437640751|ref|ZP_20807826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437659148|ref|ZP_20812075.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437690308|ref|ZP_20820226.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437712843|ref|ZP_20827219.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437735588|ref|ZP_20832484.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437782952|ref|ZP_20836607.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437804095|ref|ZP_20838764.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|438089517|ref|ZP_20860192.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438104757|ref|ZP_20866021.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438114074|ref|ZP_20869850.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|445139834|ref|ZP_21384592.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445152653|ref|ZP_21390929.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445177694|ref|ZP_21397816.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445197126|ref|ZP_21400661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445227809|ref|ZP_21404421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445340930|ref|ZP_21416592.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445348207|ref|ZP_21419576.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445367477|ref|ZP_21425604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|353075268|gb|EHB41028.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353606659|gb|EHC60830.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353635043|gb|EHC81466.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|363550756|gb|EHL35082.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363550939|gb|EHL35264.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363556123|gb|EHL40338.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363562577|gb|EHL46673.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363562885|gb|EHL46973.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363574925|gb|EHL58784.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363575604|gb|EHL59454.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366060253|gb|EHN24517.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366060684|gb|EHN24944.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366063265|gb|EHN27485.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366069492|gb|EHN33615.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366076294|gb|EHN40332.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366077759|gb|EHN41768.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366085166|gb|EHN49056.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366828276|gb|EHN55163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205293|gb|EHP18808.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|381290433|gb|EIC31698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381301550|gb|EIC42606.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381302017|gb|EIC43066.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381313833|gb|EIC54612.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381316617|gb|EIC57363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|383797772|gb|AFH44854.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392612625|gb|EIW95094.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392614840|gb|EIW97284.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392733074|gb|EIZ90280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392739788|gb|EIZ96920.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392741360|gb|EIZ98465.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392750338|gb|EJA07307.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392753796|gb|EJA10717.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392758103|gb|EJA14979.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392772755|gb|EJA29455.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|395983007|gb|EJH92201.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395985974|gb|EJH95138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395989088|gb|EJH98223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395998083|gb|EJI07121.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|395998271|gb|EJI07303.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396006913|gb|EJI15874.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396009815|gb|EJI18738.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396014719|gb|EJI23604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396019276|gb|EJI28133.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396024689|gb|EJI33474.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396029107|gb|EJI37846.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396029377|gb|EJI38114.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396036586|gb|EJI45245.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396040673|gb|EJI49296.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396046746|gb|EJI55329.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396050641|gb|EJI59163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396060342|gb|EJI68788.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396060399|gb|EJI68844.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396061956|gb|EJI70369.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396065357|gb|EJI73734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396072047|gb|EJI80362.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|402520585|gb|EJW27927.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402527564|gb|EJW34825.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402527696|gb|EJW34956.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402530726|gb|EJW37940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|434957778|gb|ELL51385.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964390|gb|ELL57412.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434974247|gb|ELL66635.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434979916|gb|ELL71867.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434980587|gb|ELL72508.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434987028|gb|ELL78679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434990640|gb|ELL82190.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434994753|gb|ELL86070.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434996699|gb|ELL88015.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435007132|gb|ELL97989.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435013151|gb|ELM03811.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435014459|gb|ELM05025.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|435016673|gb|ELM07199.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435017493|gb|ELM07995.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435025531|gb|ELM15662.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435030635|gb|ELM20644.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435032508|gb|ELM22452.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435042627|gb|ELM32344.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435044146|gb|ELM33844.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435048853|gb|ELM38409.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435056721|gb|ELM46092.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435058556|gb|ELM47877.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435063026|gb|ELM52198.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435070702|gb|ELM59684.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435071675|gb|ELM60615.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435076182|gb|ELM64978.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435080164|gb|ELM68857.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435085116|gb|ELM73670.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435095058|gb|ELM83395.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435095217|gb|ELM83535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435098719|gb|ELM86950.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435103130|gb|ELM91233.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435103345|gb|ELM91440.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435116657|gb|ELN04392.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435119369|gb|ELN06985.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435119648|gb|ELN07250.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435120552|gb|ELN08130.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435133761|gb|ELN20917.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435133978|gb|ELN21122.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435136988|gb|ELN24060.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435144725|gb|ELN31557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435150330|gb|ELN37008.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435153057|gb|ELN39678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435160643|gb|ELN46906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435163272|gb|ELN49408.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435173752|gb|ELN59221.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435176187|gb|ELN61577.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435178589|gb|ELN63796.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435184051|gb|ELN68997.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435197394|gb|ELN81679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435197600|gb|ELN81883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435201396|gb|ELN85308.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435204891|gb|ELN88542.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435209245|gb|ELN92573.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435215443|gb|ELN98130.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435224774|gb|ELO06723.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435230548|gb|ELO11854.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435231681|gb|ELO12910.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435241271|gb|ELO21636.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435241692|gb|ELO22034.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435246979|gb|ELO26966.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435250443|gb|ELO30173.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435254285|gb|ELO33688.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435256168|gb|ELO35513.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435270200|gb|ELO48704.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435276700|gb|ELO54698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435281679|gb|ELO59339.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435285984|gb|ELO63326.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435287126|gb|ELO64341.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435299320|gb|ELO75472.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435303024|gb|ELO78945.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435316942|gb|ELO90018.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435322053|gb|ELO94394.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435329098|gb|ELP00551.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|444853132|gb|ELX78204.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444853682|gb|ELX78750.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444855949|gb|ELX80988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444864050|gb|ELX88860.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444866719|gb|ELX91439.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444871920|gb|ELX96307.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444876342|gb|ELY00518.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444882424|gb|ELY06390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 453
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|378960234|ref|YP_005217720.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|374354106|gb|AEZ45867.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 455
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417356647|ref|ZP_12132146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353595575|gb|EHC52803.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 463
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|409249265|ref|YP_006885097.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
RNA-dependent helicase p72; DEAD box protein p72
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
RNA-dependent helicase p72; DEAD box protein p72
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 454
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94]
gi|416268083|ref|ZP_11642051.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
gi|416304675|ref|ZP_11653972.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
gi|417681065|ref|ZP_12330444.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
gi|420324512|ref|ZP_14826293.1| ATP-dependent RNA helicase rhlE [Shigella flexneri CCH060]
gi|420353560|ref|ZP_14854672.1| ATP-dependent RNA helicase rhlE [Shigella boydii 4444-74]
gi|420379143|ref|ZP_14878632.1| ATP-dependent RNA helicase rhlE [Shigella dysenteriae 225-75]
gi|421681481|ref|ZP_16121307.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 1485-80]
gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC
3083-94]
gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
gi|391256040|gb|EIQ15179.1| ATP-dependent RNA helicase rhlE [Shigella flexneri CCH060]
gi|391278315|gb|EIQ37027.1| ATP-dependent RNA helicase rhlE [Shigella boydii 4444-74]
gi|391305618|gb|EIQ63398.1| ATP-dependent RNA helicase rhlE [Shigella dysenteriae 225-75]
gi|404341432|gb|EJZ67838.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 1485-80]
Length = 454
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417381863|ref|ZP_12147999.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
gi|353616624|gb|EHC67835.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
Length = 397
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKR-QNLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|423128237|ref|ZP_17115916.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
gi|376393593|gb|EHT06249.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
Length = 449
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHLVQKEPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S + L+ + G+ +P+ + +L+S
Sbjct: 87 LAAQI---------------GENVRDYSKYLNVRSLV----VFGGVSINPQ--MMKLRSG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VDILVATPGRL+D H NA +L+ + LV+DE DR+L
Sbjct: 126 VDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + + LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDEIKSLAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVSQLVHFVDKKRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE K ++LL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDIERLLKK 366
>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
Length = 797
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 191/422 (45%), Gaps = 58/422 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 325 GYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEENEA 380
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q++D A +G+ V VG SI E G
Sbjct: 381 EGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE------------EQGF- 427
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
++ ++++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 428 --------RIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVV 478
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL S N ++ + +K R M SAT+
Sbjct: 479 GVLDAMPSSN--------------------LKPENEDEELDEKKIYRTTYM-FSATMPPA 517
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL LG++ IVF
Sbjct: 518 VERLARKYLRNPVVVTIG-TAGKATDLITQHVIMMKESEKMFKLQKLLDELGDKTAIVFI 576
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ +S L L+ G ++ G + Q R +L+ FR + VLV++D RG+
Sbjct: 577 NTKKSADNLAKGLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 633
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F L Q ++
Sbjct: 634 DIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQNNS 693
Query: 415 PI 416
P+
Sbjct: 694 PV 695
>gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 455
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRVLAKLPAKRQ------NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|432673792|ref|ZP_19909281.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|431217166|gb|ELF14746.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
Length = 454
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVARCNTA-SDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 488
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRVLAKLPAKRQ------NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
Length = 453
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|402221225|gb|EJU01294.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 813
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 180/393 (45%), Gaps = 70/393 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAP 81
RD+ + TGSGKTL++ LP+++ L L AL++ PTR+LA+Q+ +V ++
Sbjct: 94 RDVLGAARTGSGKTLAFLLPVLELLWRSKWGPQDGLGALIISPTRELAMQIFEVLRSVGQ 153
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G ++ DE QE + ++ILVATPGRL+ H
Sbjct: 154 YHSFSAGLVIGGKNVRDE----------------------QERLTRMNILVATPGRLLQH 191
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T GF ++L LV+DE DR+L + + ++ +
Sbjct: 192 MDQTAGFATDNLQILVLDEADRILDMGFSHTINAII----------------------AN 229
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL--P 259
L R+ ++ SAT TQ LA+L L P F++ E +L P
Sbjct: 230 LPKTRQT----------------LLFSATQTQSVKDLARLSLKDPEFVSVREAGQELATP 273
Query: 260 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKI 317
+ LE + L+CE K L + +++ + K +VF S S ++ + F +L+ I +
Sbjct: 274 KNLEQHYLVCELDKKLDVLYSFIKAHLKSKALVFLS---SGKQVRFVFEAFRKLQPGIPL 330
Query: 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 377
G Q+ + R + F VL ++D RG+D V+ VV D P TYIHR
Sbjct: 331 LHLLGKQKLAKRMDIFQRFTSSTNAVLFATDIAARGLDFPAVDWVVQLDAPEDADTYIHR 390
Query: 378 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 410
GRTAR G+ L +E + K L++ +
Sbjct: 391 VGRTARYDSAGKALLFLLPNEEEGMLKELERKE 423
>gi|421061112|ref|ZP_15523489.1| DEAD/DEAH box helicase domain protein, partial [Pelosinus
fermentans B3]
gi|392451871|gb|EIW28841.1| DEAD/DEAH box helicase domain protein, partial [Pelosinus
fermentans B3]
Length = 344
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 176/380 (46%), Gaps = 87/380 (22%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
+D+ S TG+GKTL++ LPI++ + + ++AL++ PTR+LALQ+ A +A +G
Sbjct: 41 KDVVGQSQTGTGKTLAFILPILEKIEI-SKPIVQALIITPTRELALQITREVAKLADQLG 99
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDH 141
+ V L+V Y +DV +++L+ I++ TPGRLMDH
Sbjct: 100 IQV-LSV-----------------------YGGQDVDRQIKKLKGGAQIVIGTPGRLMDH 135
Query: 142 INATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 200
+ RG LE++ LV+DE D++L + +L V +L R + R +
Sbjct: 136 LR--RGTIQLENVTKLVLDEADQML---HMGFLEDVEELVRQTSNKRQT----------- 179
Query: 201 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-------FLTTGE 253
M+ SAT+ LA + PL +T E
Sbjct: 180 ------------------------MLFSATMPSKIRGLADRYMRKPLDIRIQTKNITLDE 215
Query: 254 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313
+ + E ES K++ S + Y L IVF + + + L+ G
Sbjct: 216 IKQIMVEVPESEKIVKLSSMIDEYRPYL--------AIVFCHTKKRAIAVNMALSQKG-- 265
Query: 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
+ E G Q R + +K FRE KIQ+LV++D RG+DVEGV ++ NYD P + +
Sbjct: 266 -YETDELHGELSQPKREQVMKRFREAKIQILVATDIAARGLDVEGVTHIFNYDIPHDVDS 324
Query: 374 YIHRAGRTARAGQLGRCFTL 393
YIHR GRT RAGQ G TL
Sbjct: 325 YIHRIGRTGRAGQAGMAITL 344
>gi|417340297|ref|ZP_12121649.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
gi|417527880|ref|ZP_12184955.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|353668359|gb|EHD05564.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|357959299|gb|EHJ83588.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
Length = 398
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKR-QNLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 402
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKR-QNLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|417364412|ref|ZP_12137345.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
gi|353597290|gb|EHC54049.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
Length = 452
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|321250140|ref|XP_003191703.1| hypothetical protein CGB_A8530W [Cryptococcus gattii WM276]
gi|317458170|gb|ADV19916.1| Hypothetical protein CGB_A8530W [Cryptococcus gattii WM276]
Length = 860
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 181/400 (45%), Gaps = 62/400 (15%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRAL 60
SS F + I P L RD+ ++ TGSGKTL++ +P+++ L + L A+
Sbjct: 77 SSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLERLYLEKWGPMDGLGAV 136
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA+Q I S GL +G + +E
Sbjct: 137 VISPTRELAVQTFMQLRDIGKYHNFSAGLVIGGKPLKEE--------------------- 175
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++IL+ATPGRL+ H+++T GF + LV+DE DRLL + L ++
Sbjct: 176 -QERLGRMNILIATPGRLLQHLDSTVGFDPSAVKVLVLDEADRLLDLGFLPALKAIV--- 231
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
+ FS T A GS P ++ SAT ++D LA+
Sbjct: 232 -----SHFSPVQT----APGS-----------------RPSRQTLLFSATQSKDLAALAK 265
Query: 241 LDLHHPLFLTTGETRYK--LPERLESYKLIC--ESKLKPLYLVALLQSLGEEKCIVFTSS 296
L LH PL+++ + + +P LE Y + E KL L+ ++S + K IVF +S
Sbjct: 266 LSLHEPLYISCNKPGEEGVMPANLEQYYAVVPLERKLDALW--GFVKSHLKMKGIVFVTS 323
Query: 297 VESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ ++ + F L + + G Q+Q R + F K +L+ +D RG+
Sbjct: 324 GKQVRQVRFIFETFRRLHPGLPLMHLHGKQKQPTRLDIFQRFSSSKSALLICTDVAARGL 383
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D V+ V+ D P + TYIHR GRTAR G T+L
Sbjct: 384 DFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTIL 423
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 184/404 (45%), Gaps = 72/404 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPT 65
F A+ +++I L D+ + TG+GKTL++ P++ L ++ + ++ALV+ PT
Sbjct: 24 FETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDKEKKKGVKALVLTPT 83
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ+KD ++ V G SI +I ++++
Sbjct: 84 RELALQIKDELKRLSKYSKTKVLPVYGGESIERQI---------------------KDIK 122
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
S VDI+V TPGR++DHIN R L + +L++DE D +L + + T+++ T + +
Sbjct: 123 SGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQ 181
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA----QL 241
M+ SAT+ + KLA +
Sbjct: 182 T--------------------------------------MLFSATMPEPIKKLALNYMKK 203
Query: 242 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301
D+ H L T K+ + + K +K K L ++ S E I+F +
Sbjct: 204 DVEHIAILKKSLTVDKIAQNYFAVK----NKDKLEALCRIIDSEEPESAIIFCRTKRGVD 259
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
L + G ++ G Q+ R TLK F++ + LV++D RG+DVE +++
Sbjct: 260 ELVEAMQSKG---YNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISH 316
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
V+NYD P ++Y+HR GRT RA + G ++L+ EV +++
Sbjct: 317 VINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360
>gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/442 (27%), Positives = 197/442 (44%), Gaps = 61/442 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 229 GYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 284
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q++D A +G+ V VG SI E G
Sbjct: 285 EGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE------------EQGF- 331
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
++ ++++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 332 --------RIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVV 382
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL S N ++ + +K R M SAT+
Sbjct: 383 GVLDAMPSSN--------------------LKPENEDEELDEKKIYRTTYM-FSATMPPA 421
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL LG++ IVF
Sbjct: 422 VERLARKYLRNPVVVTIG-TAGKATDLITQHVIMVKGSEKMPKLQKLLDELGDKTAIVFI 480
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ +ST L L+ G ++ G + Q R +L+ FR + VLV++D RG+
Sbjct: 481 NTKKSTDTLAKGLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 537
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F L Q +
Sbjct: 538 DIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQSNS 597
Query: 415 PIHSIPSSLIESLRPVYKSGDV 436
P +P L +K G +
Sbjct: 598 P---VPPELARHEASKFKPGSI 616
>gi|237796237|ref|YP_002863789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 524
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 184/404 (45%), Gaps = 72/404 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPT 65
F A+ +++I L D+ + TG+GKTL++ P++ L ++ + ++ALV+ PT
Sbjct: 24 FETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDKEKKKGVKALVLTPT 83
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ+KD ++ V G SI +I ++++
Sbjct: 84 RELALQIKDELKRLSEYSKTKVLPVYGGESIERQI---------------------KDIK 122
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
S VDI+V TPGR++DHIN R L + +L++DE D +L + + T+++ T + +
Sbjct: 123 SGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQ 181
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA----QL 241
M+ SAT+ + KLA +
Sbjct: 182 T--------------------------------------MLFSATMPEPIKKLALNYMKK 203
Query: 242 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301
D+ H L T K+ + + K +K K L ++ S E I+F +
Sbjct: 204 DVEHIAILKKSLTVDKIAQNYFAVK----NKDKLEALCRIIDSEEPESAIIFCRTKRGVD 259
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
L + G ++ G Q+ R TLK F++ + LV++D RG+DVE +++
Sbjct: 260 ELVEAMQSKG---YNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISH 316
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
V+NYD P ++Y+HR GRT RA + G ++L+ EV +++
Sbjct: 317 VINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360
>gi|389579132|ref|ZP_10169159.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
gi|389400767|gb|EIM62989.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
Length = 422
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/392 (28%), Positives = 190/392 (48%), Gaps = 73/392 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I P L RD+ + TG+GKT ++ LP++Q L N + +RAL+V PTR+LA Q+
Sbjct: 27 IQKEAIPPILEGRDILGLAQTGTGKTAAFVLPLLQRLLNGPRKKVRALIVAPTRELAEQI 86
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ + GL SI+ + G+ P+ ++ ++S V+I+V
Sbjct: 87 HADISKLGQKTGL--------QSIS-----------IYGGVGKPPQ--IKAIRSGVEIIV 125
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
A PGRL+D +N R F+L+ + LV+DE D + + + LP + ++ +
Sbjct: 126 ACPGRLLDLLN-DRSFSLQAVEMLVLDEADHMFDKGF---LPDIRRIIKQ---------- 171
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP+ SL V SAT+ ++ LA+ L +P+ +
Sbjct: 172 --LPTKRQSL-----------------------VFSATMPEEIRHLAENILINPVTVQIN 206
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK----CIVFTSSVESTHRLCTLLN 308
T+ L +++ E K +LL+++ +E+ +VFT + L +L
Sbjct: 207 HTQPVLAISHVLFQVAKEQK------TSLLKTIIKEEEMKSTLVFTRTKHKAKSLALVLQ 260
Query: 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
G K G Q R + L F+ G+ ++LV++D RG+DV+G+++V+NYD P
Sbjct: 261 KAG---YKAASIQGNLSQLKRQEALNGFKTGEFKILVATDIAARGIDVKGISHVINYDVP 317
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+TY HR GRT RA + G+ F ++++K
Sbjct: 318 DTPETYTHRTGRTGRAERAGQAFIFAGQEDIK 349
>gi|421075784|ref|ZP_15536790.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392526099|gb|EIW49219.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 447
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 174/377 (46%), Gaps = 71/377 (18%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
+D+ S TG+GKTL++ LPI++ + + ++AL++ PTR+LALQ+ A +A +G
Sbjct: 41 KDVVGQSQTGTGKTLAFILPILEKIEI-SKPIVQALIITPTRELALQITREVAKLADQLG 99
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDH 141
+ V L+V Y +DV +++L+ I++ TPGRLMDH
Sbjct: 100 IQV-LSV-----------------------YGGQDVDRQIKKLKGGAQIVIGTPGRLMDH 135
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
+ LE++ LV+DE D++L + +L V +L R + R +
Sbjct: 136 LR-RETIQLENVTKLVLDEADQML---HMGFLEDVEELVRQTSNKRQT------------ 179
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 261
M+ SAT+ LA + PL + L E
Sbjct: 180 -----------------------MLFSATMPSKIRGLADRYMRKPLDIRIQTKNITLDEI 216
Query: 262 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
+ + ES+ K L +++ IVF + + + L+ G + E
Sbjct: 217 KQIMVEVPESE-KIAKLSSMIDEYRPYLAIVFCHTKKRAIAVNMALSQKG---YETDELH 272
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
G Q R + +K FRE KIQ+LV++D RG+DVEGV ++ NYD P + +YIHR GRT
Sbjct: 273 GELSQPKREQVMKRFREAKIQILVATDIAARGLDVEGVTHIFNYDIPHDVDSYIHRIGRT 332
Query: 382 ARAGQLGRCFTLLHKDE 398
RAGQ G TL+ E
Sbjct: 333 GRAGQAGMAITLIDPHE 349
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 65
F A+ +++I L D+ + TG+GKTL++ P++ TL + + ++ALV+ PT
Sbjct: 24 FETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISTLCDEGKKKGVKALVLTPT 83
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ+KD ++ V G SI +I ++++
Sbjct: 84 RELALQIKDELKRLSKYSKTKVLPVYGGESIERQI---------------------KDIK 122
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
S VDI+V TPGR++DHIN R L + +LV+DE D +L + + T++ T + +
Sbjct: 123 SGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTPEEKQ 181
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
A+ P I++ + KD + ++K L+ +K+AQ H+
Sbjct: 182 TMLFSATMPAP--------IKKLALNYMKKDVEHIAILKKSLTV------DKIAQ---HY 224
Query: 246 PLFLTTGETRYKL------PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
F + + + E ES + C +K LV +QS G +VE
Sbjct: 225 --FAVKNKDKLEAICRIIDSEEPESAIIFCRTKRGVDELVEAMQSKG--------YNVEG 274
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
H G Q+ R TLK F++ + LV++D RG+DVE +
Sbjct: 275 MH--------------------GDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENI 314
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++V+NYD P ++Y+HR GRT RA + G ++L+ EV +++
Sbjct: 315 SHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360
>gi|363752539|ref|XP_003646486.1| hypothetical protein Ecym_4646 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890121|gb|AET39669.1| hypothetical protein Ecym_4646 [Eremothecium cymbalariae
DBVPG#7215]
Length = 490
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 194/428 (45%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E I L RD+ + G+GKT ++ +P ++ + + V ++A
Sbjct: 43 MGIFEAGFEKPSPIQEEAIPIALTRRDILARAKNGTGKTAAFVIPTLEIVKPK-VNKIQA 101
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + GLS + G +++ D+I
Sbjct: 102 LIMVPTRELALQTSQVVRTLGKHCGLSCMVTTGGTNLRDDI------------------- 142
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L V +LV TPGR++D + + + L ++DE D++L +++ + +L
Sbjct: 143 --MRLNEPVHVLVGTPGRVLD-LASRKVADLSECSLFIMDEADKMLSRDFKSLIEQIL-- 197
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+FLPS+ SL +P VK + L NK
Sbjct: 198 -------------SFLPSSHQSL-----------LFSATFPLTVKEFMVKHL----NKPY 229
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 230 EINLMDELTLKGITQYYAFVE--ERQKLHC--------LNTLFSKLQINQAIIFCNS--- 276
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L +L +Q R+K FR+GK++ LV SD +TRG+D++ V
Sbjct: 277 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 336
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I SI
Sbjct: 337 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IASI 393
Query: 420 PSSLIESL 427
P+ + ++L
Sbjct: 394 PTQIDKAL 401
>gi|333916134|ref|YP_004489866.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746334|gb|AEF91511.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 504
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 198/439 (45%), Gaps = 91/439 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
MG S+ P+Q + I L +D+ + TG+GKT +++LP++Q L ++ A
Sbjct: 21 MGYESMTPIQA----QAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENTSASPA 76
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
+RALV+LPTR+LA QV A +I++ K KL + +
Sbjct: 77 RHPVRALVLLPTRELADQV------------------------AQQIAQYAKYTKLRSTV 112
Query: 114 CYDPEDVLQ---ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
+ D+ EL+ V++LVATPGRL+DHI A + L + Y+V+DE DR+L
Sbjct: 113 VFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEA-KNAVLNQVEYVVLDEADRMLDIG-- 169
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
FLP ++R P R ++ SAT
Sbjct: 170 -----------------------FLPD------------LQRILSHLPKTRTT-LLFSAT 193
Query: 231 LTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 287
+ + +LA L P+ + ET + +R S K L +LL+
Sbjct: 194 FSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYS----VSDDDKRYALRSLLKQRDI 249
Query: 288 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 347
+ VF++S RL L G ++ G + Q R K L+AF+ G++ +LV +
Sbjct: 250 RQAFVFSNSKLGCARLTRALERDG---LRATALHGDKSQDERLKALEAFKRGEVDLLVCT 306
Query: 348 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKK 404
D RG+D++ V V NYD P + Y+HR GRT RAG G TL+ + V +K
Sbjct: 307 DVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHDARLVGEIEK 366
Query: 405 LLQKADN-DSCPIHSIPSS 422
L++K N ++CP+ S
Sbjct: 367 LIKKKINVEACPMEDFRGS 385
>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 450
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 184/406 (45%), Gaps = 74/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRAVRCLRALVVLPT 65
+ + I L DL + TG+GKT ++ALP++Q L ++ A +RAL+++PT
Sbjct: 30 IQAQAIPLALEGHDLMAGAQTGTGKTAAFALPMLQKLLPHASASTSPAKHPVRALILVPT 89
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LA+QV++ A A L + G I + P L+ G
Sbjct: 90 RELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQT------PHLKTG------------- 130
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
V+ILVATPGRL+DHI + L + LV+DE DR+L + L +L L
Sbjct: 131 --VEILVATPGRLLDHIE-QKTVLLNQVQMLVLDEADRMLDMGFMPALKRILAL------ 181
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
LP SL + SAT + + KL++ +++
Sbjct: 182 ---------LPRQRQSL-----------------------MFSATFSNEIKKLSEDFMNY 209
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
P + + E + + E K L LL+ ++ IVFT + + RL
Sbjct: 210 PTLIEVARSNASA-ENITQKVYLVEQSGKHQLLAQLLRGDDAKQVIVFTKTKLTASRLAK 268
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
L G + G + Q R + L AF++G++ VL+++D RG+D++ + V+NY
Sbjct: 269 QLQREG---VSADAIHGDKSQLERMQALDAFKQGRVAVLIATDVAARGLDIDSLPMVINY 325
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQK 408
+ P + Y+HR GRT RAG G +L+ +E K +KL++K
Sbjct: 326 EIPHAAEDYVHRIGRTGRAGASGTAISLVSPEEEKYLLEIEKLIKK 371
>gi|421477647|ref|ZP_15925459.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
gi|400226180|gb|EJO56273.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
Length = 414
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G SI P+++A
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI---------NPQIDA--- 122
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 123 ---------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRMLD-------- 164
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K PR ++ SAT + +
Sbjct: 165 ------------------------MGFIHDIKRVLA------KLPPRRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPREVIAGFEP 379
>gi|421887362|ref|ZP_16318522.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|379983078|emb|CCF90795.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
Length = 453
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S + L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNVRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|359475106|ref|XP_003631587.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis
vinifera]
Length = 712
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 197/424 (46%), Gaps = 62/424 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 311 GYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEENEA 366
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q++D A +G+ V VG SI E G
Sbjct: 367 EGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE------------EQGF- 413
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
++ ++++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 414 --------RIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVV 464
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL DA +PS+ ++ + +K R M SAT+
Sbjct: 465 GVL------------DA---MPSS-----NLKPENEDEELDEKKIYRTTYM-FSATMPPA 503
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL LG++ IVF
Sbjct: 504 VERLARKYLRNPVVVTIG-TAGKATDLITQHVIMMKESEKMFKLQKLLDELGDKTAIVFI 562
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ +S L L+ G ++ G + Q R +L+ FR + VLV++D RG+
Sbjct: 563 NTKKSADNLAKGLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 619
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEVKRFKKLLQKADND 412
D+ V +V+NYD P I+ Y HR GRT RAG+ G F LH +V F L Q +
Sbjct: 620 DIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDV--FYDLKQMLIQN 677
Query: 413 SCPI 416
+ P+
Sbjct: 678 NSPV 681
>gi|348535433|ref|XP_003455205.1| PREDICTED: ATP-dependent RNA helicase DDX55-like [Oreochromis
niloticus]
Length = 590
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 183/417 (43%), Gaps = 93/417 (22%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+ + + PVQ A I + +D+ + TGSGKTL++ +PI++ L R + +
Sbjct: 27 LKFTHMTPVQSAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPIIELLLKREEKLKKMQ 82
Query: 59 --ALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
ALV+ PTR+LA+Q+ +V I L +G S+ A
Sbjct: 83 VGALVITPTRELAVQISEVMEQFIEKFPQFKQILLIGGSNPA------------------ 124
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHI-NATRGFTL----EHLCYLVVDETDRLLREAYQ 170
EDV + +I++ATPGRL D + G L + L LV+DE DRLL ++
Sbjct: 125 --EDVEKFKDKGANIVIATPGRLEDMFRRKSDGLDLASSVKSLDVLVLDEADRLLDMGFE 182
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
A L T+L G L RR G + SAT
Sbjct: 183 ASLNTIL----------------------GYLPKQRRTG----------------LFSAT 204
Query: 231 LTQDPNKLAQLDLHHPLFLTTGE-------TRYKLPERLESYKLICESKLKPLYLVALLQ 283
TQ+ KL + L +P+ +T E T K P RL +Y IC ++ K LVA L+
Sbjct: 205 QTQELEKLVRAGLRNPVRITVKEKGLAAAATAQKTPSRLSNYYTICRAEDKFNNLVAFLR 264
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGEL------RIKIKEYSGLQRQSVRSKTLKAFR 337
EK +VF S+ C + ++G + ++ I G + R+ FR
Sbjct: 265 QHKHEKLLVFFST-------CACVEYYGRVLEMLVKKVTIHCIHGKMKHK-RNSIFADFR 316
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ K +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L
Sbjct: 317 KLKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTARIGNYGDALVFL 373
>gi|421472538|ref|ZP_15920727.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400222909|gb|EJO53257.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 407
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSAR 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G SI P+++A
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI---------NPQIDA--- 122
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 123 ---------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRML--------- 163
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K PR ++ SAT + +
Sbjct: 164 -----------------------DMGFIHDIKRVLA------KLPPRRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPREVIAGFEP 379
>gi|294660132|ref|XP_462573.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
gi|218512022|sp|Q6BGU8.2|DBP8_DEBHA RecName: Full=ATP-dependent RNA helicase DBP8
gi|199434486|emb|CAG91086.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
Length = 441
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 182/391 (46%), Gaps = 66/391 (16%)
Query: 20 PGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78
P + + CI + TGSGKT+++A P++ S + LV+ PTR+LALQ+ + FAA
Sbjct: 33 PKILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDP-SGIYGLVLTPTRELALQIAEQFAA 91
Query: 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
+ ++ + V + VG I + EL +RP +VATPGRL
Sbjct: 92 LGSSMNIKVSVIVGGEDIVKQALELQRRPHF---------------------VVATPGRL 130
Query: 139 MDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
DHI + T L + YL++DE DRLL ++ L + S ++ + T L
Sbjct: 131 ADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNILPSTDKRQ-----TLL 185
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET- 254
+A T+ R KD+P P+ KL P+F+ ET
Sbjct: 186 FTA-----TV--TDAVRALKDRPVPK--------------GKL-------PVFIHEVETV 217
Query: 255 -RYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFG 311
+ +P L + S +K YL ++L + I+FT+ + L L
Sbjct: 218 DKVAIPSTLSVKYVFVPSYVKEAYLHSILNLPQYSDSLSIIFTNRTATAELLRRTLR--- 274
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+L ++ Q+ R+ +L F+ G ++L+++D +RG+D+ V VVNYD PA
Sbjct: 275 KLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADA 334
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+IHR GRTARAG+ G +++ + +V R
Sbjct: 335 DDFIHRVGRTARAGRKGDAISIVAEKDVDRI 365
>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
Length = 481
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 118/404 (29%), Positives = 186/404 (46%), Gaps = 72/404 (17%)
Query: 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80
L ERD+ + S TGSGKT S+ +P+ + L N +ALV+ PTR+LA QVK+ I
Sbjct: 38 ALEERDVVVKSQTGSGKTASFGIPLCE-LVNWEENKPQALVLTPTRELAAQVKEDITNIG 96
Query: 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 140
+ G+S A + K+ EL+ I+V TPGR++D
Sbjct: 97 RFKRIKAAAVYGKSPFA--------KQKV-------------ELKQKTHIVVGTPGRVLD 135
Query: 141 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 200
HI LE + YLV+DE D +L + + ++Q LPS
Sbjct: 136 HIEK-ETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQ---------------HLPS--- 176
Query: 201 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYK 257
ER V M+ SATL +D +L++ + P+ + G T
Sbjct: 177 ----------ER----------VTMLFSATLPEDIEELSRKYMKKPVDVEIKANGLTTST 216
Query: 258 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 317
+ + S + E K + L V +++ + CI+F + E + L L+ FG KI
Sbjct: 217 IDHSVISVE--NERKFELLKDVTTVEN--PDSCIIFCRTQEQVNTLLDDLDDFGYPCDKI 272
Query: 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 377
G Q R + + F++GK + LV++D RG+D++ + +V+NYD P ++Y+HR
Sbjct: 273 ---HGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDIDNITHVINYDLPLEKESYVHR 329
Query: 378 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
GRT RAG+ G+ T + E KR +++ S P + PS
Sbjct: 330 TGRTGRAGKKGKAITFVTPYE-KRMLSEIEEYIGFSIPTSAPPS 372
>gi|198431984|ref|XP_002127467.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
[Ciona intestinalis]
Length = 728
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 189/425 (44%), Gaps = 96/425 (22%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDVFAAI 79
+D I S TGSGKT++YAL +VQ L R R ALV +PTR+LALQ +VF+ +
Sbjct: 180 KDALIRSQTGSGKTIAYALAVVQNLQGLVPRITRMDGPAALVFVPTRELALQSYEVFSRL 239
Query: 80 APAVGLSVGLAV--GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 137
V V V GQ KR +A L+ +I+V+TPGR
Sbjct: 240 TLPVRRIVATCVVGGQ-----------KRKSEKA-----------RLRKGSNIIVSTPGR 277
Query: 138 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 197
+DHI T +L + +++ DE DRLL +Q + +L T +
Sbjct: 278 FIDHIENTHCLSLAKVKWIIFDEADRLLDMGFQKDINKIL---------------TAVKE 322
Query: 198 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT--GETR 255
G+ + + ++LSATLT+ L L L +P+ + T G+ +
Sbjct: 323 QTGTKQQV-------------------VLLSATLTKGVENLVNLALTNPVHIETEAGKAK 363
Query: 256 YK------------------LPERLESYKLICESKLKPLYLVALLQSL----GEEKCIVF 293
K LP +L I SKL+ + LVA + G+ K +VF
Sbjct: 364 EKNAQIFVDPLTGLNVEKVPLPSKLTQSVTIVPSKLRLVTLVAFINKKCVIEGDGKLLVF 423
Query: 294 TS---SVESTHRLC-----TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 345
S SVE RL L N + ++ + G Q R+ T+ +R K VL+
Sbjct: 424 LSCRDSVEFHFRLLKNMKGVLNNAISDKKLGFFQLHGGMTQPERNSTINGYRCAKSGVLL 483
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+D +RG+D+ V+ VV + P Y+HR GRTARAG+ G +L EV+ + KL
Sbjct: 484 CTDVASRGLDIPKVDWVVQHTSPGNPVDYVHRVGRTARAGKAGHALLILSPAEVE-YVKL 542
Query: 406 LQKAD 410
L K D
Sbjct: 543 LTKFD 547
>gi|418408565|ref|ZP_12981881.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
gi|358005479|gb|EHJ97805.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
Length = 504
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 189/412 (45%), Gaps = 88/412 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L+V L +G G+ ++ +D
Sbjct: 77 LILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVSFEDQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERIAKMIPFTRQT-LFFSATMPPEIQKL 195
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GEE---- 288
A L +P TR ++ + + K + + S K A+L+ L EE
Sbjct: 196 ADRFLQNP-------TRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAEEAELK 248
Query: 289 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
I+F + + L L+ G + G Q R+ L+ FR+G++ +LV+SD
Sbjct: 249 NAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASD 305
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 306 VAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 357
>gi|449308931|ref|YP_007441287.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
gi|449098964|gb|AGE86998.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
Length = 444
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 181/391 (46%), Gaps = 73/391 (18%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRDLALQVKDVF 76
L +DL ++ TG+GKT + LP++Q L+ + R +RAL++ PTR+LA QV
Sbjct: 36 LSGKDLMASAQTGTGKTAGFTLPLLQRLTANQPHPKGRRPVRALILTPTRELAAQV---- 91
Query: 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 136
G V + S +I L+ + G+ +P+ + +L+ VD+L+ATPG
Sbjct: 92 -----------GENVREYSKYLDIRSLV----VFGGVSINPQ--MMKLRGGVDVLIATPG 134
Query: 137 RLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 194
RL+D H NA + L+ + LV+DE DR+L
Sbjct: 135 RLLDLEHQNAVK---LDQVEVLVLDEADRML----------------------------- 162
Query: 195 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254
G + IRR K P+ ++ SAT + D LA+ LH+P +
Sbjct: 163 ---DMGFIHDIRRVLA------KLPPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVAR- 212
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
R E++ + + K K L L+ ++ +VFT + + L LN G
Sbjct: 213 RNTASEQVTQHVHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDG--- 269
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
I G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY+ P + Y
Sbjct: 270 ITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+HR GRT RA G +L+ DE K + +
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 185/400 (46%), Gaps = 77/400 (19%)
Query: 20 PGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRDLALQVK 73
P + E RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+LA QV
Sbjct: 33 PAVLEGRDLMASAQTGTGKTAGFTLPLLQRLVQNEPHAKGRRPIRALILTPTRELAAQV- 91
Query: 74 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 133
G V + S I L+ + G+ +P+ + +L+ VDILVA
Sbjct: 92 --------------GENVREYSKYLNIRSLV----VFGGVSINPQ--MMKLRGGVDILVA 131
Query: 134 TPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
TPGRL+D H NA L+ + LV+DE DR+L
Sbjct: 132 TPGRLLDLEHQNA---LKLDSVEVLVLDEADRML-------------------------- 162
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
G + IRR P R ++ SAT + D LA+ L +PL +
Sbjct: 163 ------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKALAEKLLRNPLEIEV 210
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R E++ + + K K L ++ ++ +VFT + + L LN G
Sbjct: 211 AR-RNTASEQVTQHVHFVDKKRKRELLSQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDG 269
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY+ P
Sbjct: 270 ---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVP 326
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ Y+HR GRT RA G +L+ DE ++ ++LL+K
Sbjct: 327 EDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKK 366
>gi|393246565|gb|EJD54074.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 595
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 194/412 (47%), Gaps = 48/412 (11%)
Query: 11 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 70
AV I P L +D N+ TGSGKT+++ALPI+Q LS ALV+ PTR+LA
Sbjct: 148 TAVQSACIPPLLAGKDCIGNAKTGSGKTIAFALPILQRLSVDPYGIF-ALVLTPTRELAF 206
Query: 71 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 130
Q+ D FA + ++G+ + VG + + EL RP I
Sbjct: 207 QIADQFAVLGGSLGIRTAVVVGGMDMMAQAIELCNRPH---------------------I 245
Query: 131 LVATPGRLMDHINATRG--FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
++ATPGR++DH+N++ + L + +LV+DE DR+L+ + L ++ + +
Sbjct: 246 VIATPGRMVDHLNSSSPDEWNLNRVKFLVLDEADRMLQPTFANELAVLMNAIPKERQTCL 305
Query: 189 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ----DPNKLAQLDLH 244
A T P+ T + G E+ F + P ++ V TL Q P+ + ++ L+
Sbjct: 306 FTA-TLTPAIEALANTPPKPGKEKPFVHR-MPAGIETV--ETLKQLYILVPSHVREVYLY 361
Query: 245 HPLF---LTTGETRYKLPE---RLESYKLICESKLKPLYLVALLQSLGEEK------CIV 292
+ L +T R PE + + K SK KP AL G++ I+
Sbjct: 362 YLLRNPPESTHHLRRAAPEPQKKRRNKKDGKSSKPKPQPKKALSSGSGDDAIVQPPPTII 421
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
FT+ S L LL G +R QRQ R +L F+ + VLV +D R
Sbjct: 422 FTARARSAAYLSELLQTLG-VRATALHSRLTQRQ--RLNSLALFKSCVVPVLVCTDIGAR 478
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFK 403
G+D++ V V+N+D P + Y HR GRTARAG+ G + + +DE K K
Sbjct: 479 GLDIDDVALVLNWDMPQEPEEYTHRVGRTARAGRGGVSVSFVTERDEEKVLK 530
>gi|375264486|ref|YP_005021929.1| ATP-dependent RNA helicase SrmB [Vibrio sp. EJY3]
gi|369839810|gb|AEX20954.1| ATP-dependent RNA helicase SrmB [Vibrio sp. EJY3]
Length = 407
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 190/408 (46%), Gaps = 74/408 (18%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVL 63
F V E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++
Sbjct: 23 FERPTKVQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILT 82
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQ 122
PTR+LA+QV D A+A L++ G G+ Y + D+L
Sbjct: 83 PTRELAMQVADQARALAKNTKLNIFTITG-------------------GVQYQEHADILA 123
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 182
Q DI+VATPGRL ++I A R F + +L++DE DR+L + PTV +L+
Sbjct: 124 TTQ---DIVVATPGRLREYIEAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS-- 174
Query: 183 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 242
NE R+ T L SA T+ GVE GF +A L +P A++D
Sbjct: 175 -NECRWR-KQTLLFSA-----TLEGRGVE-GF-------------TADLLNEP---AEID 210
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
PL R K+ + E KL L + Q+ E+ IVF + E R
Sbjct: 211 AKSPL-----RERKKIAQWYHRAD-DAEHKLALLKHIITEQA---ERTIVFLKTRE---R 258
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L + +I G Q R+ + FR+G + VL+++D RG+D+ V++V
Sbjct: 259 LAELRSQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAARGIDLPDVSHV 318
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEVKRFKK 404
+NYD P Y+HR GRTARAG+ G +++ D V R+ K
Sbjct: 319 INYDLPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366
>gi|225443496|ref|XP_002270644.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis
vinifera]
Length = 709
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 199/444 (44%), Gaps = 65/444 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 308 GYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 363
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q++D A +G+ V VG SI E G
Sbjct: 364 EGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE------------EQGF- 410
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
++ ++++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 411 --------RIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVV 461
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL S N ++ + +K R M SAT+
Sbjct: 462 GVLDAMPSSN--------------------LKPENEDEELDEKKIYRTTYM-FSATMPPA 500
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL LG++ IVF
Sbjct: 501 VERLARKYLRNPVVVTIG-TAGKATDLITQHVIMVKGSEKMPKLQKLLDELGDKTAIVFI 559
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ +ST L L+ G ++ G + Q R +L+ FR + VLV++D RG+
Sbjct: 560 NTKKSTDTLAKGLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 616
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEVKRFKKLLQKADND 412
D+ V +V+NYD P I+ Y HR GRT RAG+ G F LH +V F L Q
Sbjct: 617 DIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDV--FYDLKQMLIQS 674
Query: 413 SCPIHSIPSSLIESLRPVYKSGDV 436
+ P +P L +K G +
Sbjct: 675 NSP---VPPELARHEASKFKPGSI 695
>gi|375311376|ref|ZP_09776631.1| ATP-dependent RNA helicase dbpA [Paenibacillus sp. Aloe-11]
gi|375076556|gb|EHS54809.1| ATP-dependent RNA helicase dbpA [Paenibacillus sp. Aloe-11]
Length = 481
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 180/394 (45%), Gaps = 73/394 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V E I L ++DL + S TGSGKT +Y +P+ + L + +AL++ PTR+LALQV
Sbjct: 30 VQTEVIPVALVKKDLVVKSQTGSGKTAAYGIPLCE-LVDWNENKPQALILTPTRELALQV 88
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ I + V G+ + +EL +R I+V
Sbjct: 89 KEDITNIGRFKRIKVTSLYGKHPFHIQKAELKQR---------------------THIVV 127
Query: 133 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
TPGR++DHI RG +LE + YLV+DE D +L + + +++Q SD
Sbjct: 128 GTPGRVLDHIE--RGTLSLEQMAYLVIDEADEMLNMGFIEQVQSIIQALPSDR------- 178
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL-- 249
V M+ SAT D +L++ + HP+ +
Sbjct: 179 -------------------------------VTMLFSATFPDDVAQLSRKYMDHPVNIEI 207
Query: 250 -TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
TG T + L +++ KL L + ++++ + CI+F + E+ + L
Sbjct: 208 KATGITTATIDHSL--IQVMETDKLLLLQNLLIVEN--PDSCIIFCRTQEN---VDILFR 260
Query: 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
+L G Q R + + AFR G+ + L+++D RG+D+ + +V+NYD P
Sbjct: 261 ELADLDYPCDRIHGGMEQEERFEVMNAFRRGQFRYLIATDVAARGIDITNITHVINYDIP 320
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
++Y+HR GRT RAG+ G+ T++ + KR
Sbjct: 321 LEKESYVHRTGRTGRAGKTGKAITIVTPKDSKRL 354
>gi|441516681|ref|ZP_20998428.1| putative ATP-dependent RNA helicase, partial [Gordonia hirsuta DSM
44140 = NBRC 16056]
gi|441456474|dbj|GAC56389.1| putative ATP-dependent RNA helicase, partial [Gordonia hirsuta DSM
44140 = NBRC 16056]
Length = 464
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 181/407 (44%), Gaps = 55/407 (13%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCL----RALVVLP 64
A+ + T+ L DL + TG GKT + +P++ L + A +R L RALV++P
Sbjct: 49 AIQELTLPLALAGSDLIGQARTGMGKTFGFGVPLLHRLVHTADLGLRGLDGTPRALVIVP 108
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
TR+L +QV A V + + S +K + G YD + + EL
Sbjct: 109 TRELCIQVYADLTTAAKGVQVETVTTGEDGAETAGASRPLKLTAIYGGRPYDSQ--IAEL 166
Query: 125 QSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
QS VD++V TPGRL+D A +G L + LV+DE D +L
Sbjct: 167 QSGVDVVVGTPGRLLDL--AQQGHLVLGKVQILVLDEADEMLDLG--------------- 209
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
FLP +ER P PR M+ SAT+ LA+ L
Sbjct: 210 ----------FLPD------------IERIMGALPTPRQT-MLFSATMPGPIVTLARTFL 246
Query: 244 HHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
P + + + ER Y + K + +LQ+ G ++FT + + +
Sbjct: 247 TQPTHIRAEQANDSAVHERTTQYVYRAHALDKAELVARILQAEGRGATMIFTRTKRTAQK 306
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
+ + E + G Q R K L FREG I VLV++D RG+D++ V +V
Sbjct: 307 VA---DDLAERGFSVGAVHGDLGQVAREKALGKFREGNIDVLVATDVAARGIDIDDVTHV 363
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+NY P KTY+HR GRT RAG+ G T + DE+ R+ +L+ KA
Sbjct: 364 INYQCPEDDKTYVHRIGRTGRAGRTGTAITFVDWDELHRW-ELIDKA 409
>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
Length = 533
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 189/412 (45%), Gaps = 88/412 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA R R
Sbjct: 50 GYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 105
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L+V L +G G+ ++ +D
Sbjct: 106 LILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVSFEDQD 146
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 147 --RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG---------- 192
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 193 ---------------FIPD------------IERIAKMIPFTRQT-LFFSATMPPEIQKL 224
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GEE---- 288
A L +P TR ++ + + K + + S K A+L+ L EE
Sbjct: 225 ADRFLQNP-------TRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAEEAELK 277
Query: 289 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
I+F + + L L+ G + G Q R+ L+ FR+G++ +LV+SD
Sbjct: 278 NAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASD 334
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 335 VAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 386
>gi|429122441|ref|ZP_19183020.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
gi|426323043|emb|CCK13757.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
Length = 467
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 181/391 (46%), Gaps = 73/391 (18%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRDLALQVKDVF 76
L +DL ++ TG+GKT + LP++Q L+ + R +RAL++ PTR+LA QV
Sbjct: 36 LSGKDLMASAQTGTGKTAGFTLPLLQRLTANQPHPKGRRPVRALILTPTRELAAQV---- 91
Query: 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 136
G V + S +I L+ + G+ +P+ + +L+ VD+L+ATPG
Sbjct: 92 -----------GENVREYSKYLDIRSLV----VFGGVSINPQ--MMKLRGGVDVLIATPG 134
Query: 137 RLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 194
RL+D H NA + L+ + LV+DE DR+L
Sbjct: 135 RLLDLEHQNAVK---LDQVEVLVLDEADRML----------------------------- 162
Query: 195 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254
G + IRR K P+ ++ SAT + D LA+ LH+P +
Sbjct: 163 ---DMGFIHDIRRVLA------KLPPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVAR- 212
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
R E++ + + K K L L+ ++ +VFT + + L LN G
Sbjct: 213 RNTASEQVTQHVHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDG--- 269
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
I G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY+ P + Y
Sbjct: 270 ITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+HR GRT RA G +L+ DE K + +
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
BAA-894]
gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
Length = 474
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 181/391 (46%), Gaps = 73/391 (18%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRDLALQVKDVF 76
L +DL ++ TG+GKT + LP++Q L+ + R +RAL++ PTR+LA QV
Sbjct: 36 LSGKDLMASAQTGTGKTAGFTLPLLQRLTANQPHPKGRRPVRALILTPTRELAAQV---- 91
Query: 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 136
G V + S +I L+ + G+ +P+ + +L+ VD+L+ATPG
Sbjct: 92 -----------GENVREYSKYLDIRSLV----VFGGVSINPQ--MMKLRGGVDVLIATPG 134
Query: 137 RLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 194
RL+D H NA + L+ + LV+DE DR+L
Sbjct: 135 RLLDLEHQNAVK---LDQVEVLVLDEADRML----------------------------- 162
Query: 195 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254
G + IRR K P+ ++ SAT + D LA+ LH+P +
Sbjct: 163 ---DMGFIHDIRRVLA------KLPPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVAR- 212
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
R E++ + + K K L L+ ++ +VFT + + L LN G
Sbjct: 213 RNTASEQVTQHVHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDG--- 269
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
I G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY+ P + Y
Sbjct: 270 ITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+HR GRT RA G +L+ DE K + +
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
>gi|407792657|ref|ZP_11139694.1| ATP-dependent RNA helicase SrmB [Idiomarina xiamenensis 10-D-4]
gi|407217770|gb|EKE87602.1| ATP-dependent RNA helicase SrmB [Idiomarina xiamenensis 10-D-4]
Length = 420
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 194/429 (45%), Gaps = 84/429 (19%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
V Q++I L D+ +++PTG+GKTL++ LP +Q + + R R LV+ PTR+LA
Sbjct: 29 VQQQSIPLALDGLDVMVSAPTGTGKTLAFLLPAIQHMLDYPRRQPGAARVLVLAPTRELA 88
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 129
Q+ A A GLS L G GI Y + L +L+ A D
Sbjct: 89 EQIATQAQAFEVATGLSCVLITG-------------------GINYGTQ--LDQLELAHD 127
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I+VATPGRL+D I A + + LE + +L++DE DR+L + A V QL E R
Sbjct: 128 IVVATPGRLIDLIEAEQ-YELESVEWLIIDEADRMLDMGFSA---AVQQLA---AECRQR 180
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDK--PYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
+ L + S GVER F + P+ V + DP K + +H L
Sbjct: 181 QQAMLLSATLNS------PGVER-FAQQLLKQPKRVDV--------DPPKREKGKIHQWL 225
Query: 248 FLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ T E +Y L RL + E + +VF + E +L
Sbjct: 226 HIADTAEHKYALLHRLLNQH--------------------EGRRVVFVRTRERASQLANQ 265
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G +K G Q+ R +K ++ +L+++D RG+D++ V VVNYD
Sbjct: 266 LQRDG---LKSFTLRGDMPQADRQAVVKKLKQQTDTILIATDVAARGLDIDDVTLVVNYD 322
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQKADNDSCPIHSIPSSL 423
P Y+HR GRTARAG+ G L+ + + R ++ L++ I +
Sbjct: 323 LPKQADVYLHRIGRTARAGKSGTAIALVEAHDALLLGRIERYLKE---------KIERRI 373
Query: 424 IESLRPVYK 432
I+ LRP YK
Sbjct: 374 IKDLRPQYK 382
>gi|425780841|gb|EKV18837.1| DEAD/DEAH box helicase, putative [Penicillium digitatum PHI26]
gi|425783078|gb|EKV20947.1| DEAD/DEAH box helicase, putative [Penicillium digitatum Pd1]
Length = 809
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 135/261 (51%), Gaps = 53/261 (20%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
DLCI++ TGSGKTLSY LP+V L R+ LR L+V+PTR+L Q ++ A L
Sbjct: 276 DLCISAATGSGKTLSYVLPLVTALPPRSASRLRGLIVVPTRELVKQARESCELCASGSRL 335
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDP--------------------EDVLQEL- 124
+G AVG +I DE L++ ++ Y+P ED + E
Sbjct: 336 HIGSAVGNVAIKDEQKLLMRMDQV-----YNPAIQQQQRDGLNGNDWMNLSLEDCISEAI 390
Query: 125 -------------QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ VDIL+ TPGRL+DHI T+GFTL+HL +LV+DE DRLL E++Q
Sbjct: 391 GSNGSLPGHIQRSEPNVDILICTPGRLVDHIRYTKGFTLKHLEWLVIDEADRLLNESFQE 450
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
W+ V+ ++ N TF P K + G+ KP PR K++LSAT+
Sbjct: 451 WVDVVM-----NSLNSREAPETFGPGG----KVLSELGL--SIDAKP-PR--KVILSATM 496
Query: 232 TQDPNKLAQLDLHHPLFLTTG 252
T+D +KL L L +P + G
Sbjct: 497 TRDISKLNSLRLVNPKMVIIG 517
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 290 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
++FT S ES RL L++ L ++ + S KTL A+R+G+I V+V++D
Sbjct: 647 VLIFTKSSESASRLARLISLLHPALAKRVGTIIKSNKSSASRKTLTAYRQGRISVIVATD 706
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+RG+D++ + +V+NYD P I TY+HR GRTARAG+ G ++L+ E + F
Sbjct: 707 RASRGLDLQSLTHVINYDIPTSITTYVHRVGRTARAGRAGSAWSLVAHREGRWF 760
>gi|50425797|ref|XP_461495.1| DEHA2F26598p [Debaryomyces hansenii CBS767]
gi|49657164|emb|CAG89921.1| DEHA2F26598p [Debaryomyces hansenii CBS767]
Length = 474
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 191/428 (44%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F V +E+I L RD+ + G+GKT S+ +P +Q + V ++A
Sbjct: 1 MGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPK-VNKIQA 59
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + +GL + G +S+ D+I L DP
Sbjct: 60 LILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRL-----------NDP-- 106
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
V +LV TPGR++D + + + L V+DE D++L ++ + +L
Sbjct: 107 --------VHVLVGTPGRVLD-LASRKVADLSECPLFVMDEADKMLSREFKGIIEQIL-- 155
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
F P+ SL +P VK + LT K
Sbjct: 156 -------------AFFPTTRQSL-----------LFSATFPLAVKSFMDQHLT----KPY 187
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F + S
Sbjct: 188 EINLMDELTLRGISQFYAFVE--EKQKLHC--------LNTLFSKLQINQAIIFCN---S 234
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L EL Q R+K FR+GK++VLV SD +TRG+D++ V
Sbjct: 235 TNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAV 294
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L+ ++ K+ Q+ + I I
Sbjct: 295 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTE---IKPI 351
Query: 420 PSSLIESL 427
P+++ +SL
Sbjct: 352 PATIDKSL 359
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 184/404 (45%), Gaps = 71/404 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
GI FP+Q + + GL D+ + TG+GKTL++ +P++Q + + + R LV
Sbjct: 45 GIVDAFPIQ----EMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQRIEHGG-KAPRGLV 99
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA QV D L G +G +A + G Y+P+ +
Sbjct: 100 LAPTRELASQVTDDL--------LVAGGKLGTRVVA-----------VYGGRAYEPQ--I 138
Query: 122 QELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
Q L+ VD++V TPGRL+D A +G L + LV+DE DR+L + + +++L
Sbjct: 139 QALRDGVDVVVGTPGRLLDL--ARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELV 196
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
++ + M+ SAT+ + L++
Sbjct: 197 PAERQT--------------------------------------MLFSATMPGEIVALSR 218
Query: 241 LDLHHPLFLTTG-ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L+ P + T + ++ + KP L LLQ+ G +VF + +
Sbjct: 219 RYLNRPTNVRAEVHTESEATPQVTQHVFQTHPMDKPEVLARLLQANGRGLTMVFCQTKRA 278
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
R+ L G G Q R + L+AFR GK+ VLV++D RG+DVE V
Sbjct: 279 CDRIAADLTRRG---FAAAAVHGDLGQGQRERALRAFRSGKVDVLVATDVAARGLDVEDV 335
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
+V+NY+ P +T++HR GRT RAG+ G TL+ ++ R+K
Sbjct: 336 THVINYECPDSAETHVHRIGRTGRAGREGTAVTLVDWSDLPRWK 379
>gi|152013506|sp|Q6BJX6.2|DHH1_DEBHA RecName: Full=ATP-dependent RNA helicase DHH1
Length = 516
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 191/428 (44%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F V +E+I L RD+ + G+GKT S+ +P +Q + V ++A
Sbjct: 43 MGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPK-VNKIQA 101
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + +GL + G +S+ D+I L DP
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRL-----------NDP-- 148
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
V +LV TPGR++D + + + L V+DE D++L ++ + +L
Sbjct: 149 --------VHVLVGTPGRVLD-LASRKVADLSECPLFVMDEADKMLSREFKGIIEQIL-- 197
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
F P+ SL +P VK + LT K
Sbjct: 198 -------------AFFPTTRQSL-----------LFSATFPLAVKSFMDQHLT----KPY 229
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F + S
Sbjct: 230 EINLMDELTLRGISQFYAFVE--EKQKLHC--------LNTLFSKLQINQAIIFCN---S 276
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L EL Q R+K FR+GK++VLV SD +TRG+D++ V
Sbjct: 277 TNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAV 336
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L+ ++ K+ Q+ + I I
Sbjct: 337 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTE---IKPI 393
Query: 420 PSSLIESL 427
P+++ +SL
Sbjct: 394 PATIDKSL 401
>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 480
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G SI P+++A
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI---------NPQIDA--- 122
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 123 ---------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRML--------- 163
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K PR ++ SAT + +
Sbjct: 164 -----------------------DMGFIHDIKRVLA------KLPPRRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPREVIAGFEP 379
>gi|16758984|ref|NP_445977.1| probable ATP-dependent RNA helicase DDX52 [Rattus norvegicus]
gi|34582286|sp|Q99PT0.1|DDX52_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
Full=ATP-dependent RNA helicase ROK1-like; Short=rROK1L;
AltName: Full=DEAD box protein 52
gi|12862376|dbj|BAB32441.1| ROK1-like protein [Rattus norvegicus]
gi|149053684|gb|EDM05501.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
Length = 598
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 182/414 (43%), Gaps = 64/414 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + + I L R+L ++PTGSGKTL++++PI+ L + RALV+ PTR
Sbjct: 186 FQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTR 245
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ I+ G + + + +++IA + + P+
Sbjct: 246 ELASQIHRELIKISEGTGFRIHM-IHKAAIAAK--------------KFGPKS-----SK 285
Query: 127 AVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DILV TP RL+ + G L + +LVVDE+D+L D +
Sbjct: 286 KFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLF----------------EDGK 329
Query: 186 NRFSD--ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
F D AS FL P++ + + SAT D + +L+L
Sbjct: 330 TGFRDQLASIFLACT--------------------SPKVRRAMFSATFAYDVEQWCKLNL 369
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHR 302
+ + ++ G R E +E L S+ K L + L++ +VF S+E
Sbjct: 370 DNIVSVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKE 428
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L + G I + + Q R T+ +FR GKI VL+ + + RG+D +GVN V
Sbjct: 429 LFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLV 485
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+NYD P YIHR GRT RAG G+ T +D+ + + CP+
Sbjct: 486 INYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 189/413 (45%), Gaps = 80/413 (19%)
Query: 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL----------SNR 52
I +LFP+Q V+ GP RDL + TGSGKTL++ALP+++ L R
Sbjct: 69 IKALFPIQKHVF----GPARAGRDLIGRARTGSGKTLAFALPVLENLLKENSQSPPQRGR 124
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
+ RC +++ PTR+LA QV+ F AP GL+VG G I +I
Sbjct: 125 SPRC---IILAPTRELAKQVEKEFQESAP--GLNVGCFYGGVDIGGQI------------ 167
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
++L+S VD+ V TPGR++D IN L ++++DE D +L +
Sbjct: 168 ---------RQLRSGVDVAVGTPGRVIDLINRN-CLDLSLTRFVILDEADMMLSMGFSED 217
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+ +L ++ + A+ +PS +K I R K P LV +V A
Sbjct: 218 VEIILDSVPAERQTMLFSAT--MPSW---VKNITR-------KHLKNPALVDLVGDAQSG 265
Query: 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
+ P+ + + +H T E R + L + + +LG KCIV
Sbjct: 266 KMPDAIKTMAVH-----VTQEARRSI-----------------LVDLITVHALG-GKCIV 302
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
FT + + L+ L + G Q+ R + LK FR GK LV++D R
Sbjct: 303 FTQTKREADEVAASLS----LVHPCEALHGDISQAQREQVLKNFRNGKFTALVATDVAAR 358
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
G+D+ V+ VV+YD P + ++HR+GRT RAG+ G ++ + F+++
Sbjct: 359 GLDIPDVDLVVHYDLPRDTEAFLHRSGRTGRAGKTGSTIAVVLPRDRSYFRRM 411
>gi|419220091|ref|ZP_13763043.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8E]
gi|378071325|gb|EHW33395.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8E]
Length = 454
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 187/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRMLD------------------- 163
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR + K + ++ SAT + D LA+ LH+
Sbjct: 164 -------------MGFIHDIRRVLTKLPAKRQ------NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDICVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+H GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHHIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|375147728|ref|YP_005010169.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361061774|gb|AEW00766.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 563
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 114/396 (28%), Positives = 184/396 (46%), Gaps = 69/396 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 83
+DL + TG+GKT ++ LP++ L N ++ +ALVV PTR+L +Q+ + +
Sbjct: 41 KDLVGLAQTGTGKTAAFGLPLLH-LVNEQLKHPQALVVCPTRELCMQIVNEVEGFKKFIP 99
Query: 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 143
G+ V G + I +I +EL+ V I+VATPGRL+D I
Sbjct: 100 GMFVAAVYGGAPIGQQI---------------------RELRRGVQIVVATPGRLIDLIE 138
Query: 144 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 203
+ LE + Y+++DE D +L +Q + +L+ T E + ++T P
Sbjct: 139 -RKAIDLEQIQYVILDEADEMLNMGFQDDIEFILKNT-PKREATWLFSATMPPE------ 190
Query: 204 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 263
IRR +R KD P V V SA NK ++ H +LT+ + RY+ +RL
Sbjct: 191 -IRRVS-KRYMKD-PIEVTVGKVNSA------NK----NIDHQYYLTSAQHRYEALKRLI 237
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
+ +Y I+FT + + L G I G
Sbjct: 238 DFN-------PGIY------------GIIFTRTKADAQDIAEKLTREG---YDIDALHGD 275
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q R K + FRE +Q+L+++D RG+DV+G+ +V+NY+ P ++ Y HR+GRT R
Sbjct: 276 LTQQQRDKVMGDFREKTLQLLIATDVAARGIDVQGITHVINYELPDDVEVYTHRSGRTGR 335
Query: 384 AGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
AG+ G C +++H V+ K+ Q P H +
Sbjct: 336 AGKTGVCMSIVH---VRELGKMRQIQTIVQAPFHKL 368
>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
Length = 416
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 128/433 (29%), Positives = 198/433 (45%), Gaps = 77/433 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLP 64
P QV I L +D+ ++PTG+GK+ ++ LP +Q L + R R L++ P
Sbjct: 26 PTQVQAM--AIPEALEGKDILASAPTGTGKSAAFLLPALQHLDDFPRRDPGPARVLILTP 83
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQE 123
TR+LA+QV D +A V G GI Y + D+L
Sbjct: 84 TRELAIQVADEARELAKYTHHKVFTITG-------------------GISYQEHADILAR 124
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
Q DI+VATPGRLM++I A R F + L++DE DR+L + P V +L++
Sbjct: 125 TQ---DIVVATPGRLMEYIEAER-FDCRAIETLILDEADRMLDMGFG---PVVDRLSK-- 175
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL-AQLD 242
E R+ TFL SA T+ GV+ GF +A L +P K+ A+
Sbjct: 176 -ECRWR-KQTFLFSA-----TLEGRGVD-GF-------------TADLLNEPAKIVAEPS 214
Query: 243 LHHPLFLTTGETRY-KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301
+T R LP ++E K I ++ E+ IVF V++
Sbjct: 215 RRERKKITQWYHRADSLPHKIELLKSILTNQT--------------ERAIVF---VKTRE 257
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
RL L H +I G Q R+ + FR+GK+ VL+++D RG+D+ V++
Sbjct: 258 RLAELRGHLETAKISCAWLQGEMPQESRNNAISRFRDGKVNVLIATDVAARGIDLPDVSH 317
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
V+N+D P Y+HR GRTARAG+ G +L+ + K +++ + + I
Sbjct: 318 VINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQKMMERVGRYVKEED---EIIKE 374
Query: 422 SLIESLRPVYKSG 434
+E L+P +K
Sbjct: 375 RFVEGLKPTHKKA 387
>gi|254568340|ref|XP_002491280.1| Putative ATP-dependent RNA helicase of the DEAD-box family
[Komagataella pastoris GS115]
gi|238031077|emb|CAY69000.1| Putative ATP-dependent RNA helicase of the DEAD-box family
[Komagataella pastoris GS115]
gi|328352202|emb|CCA38601.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 434
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 184/399 (46%), Gaps = 74/399 (18%)
Query: 15 QETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73
QE P + CI + TGSGKT+++A P++ S L++ PTR+LALQ+
Sbjct: 29 QEATIPKILAGYDCIGGAKTGSGKTIAFAAPMLTKWSEDPYGVF-GLILTPTRELALQIA 87
Query: 74 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 133
+ +AA+ ++ + V + +G I + EL +RP +VA
Sbjct: 88 EQYAALGASMNIKVSVILGGGDIVQQALELQRRPHF---------------------VVA 126
Query: 134 TPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 190
TPGRL DHI ++ T L + +LV+DE DRL
Sbjct: 127 TPGRLADHILSSGEETIGGLRKIKFLVLDEADRL-------------------------- 160
Query: 191 ASTFLPSAFGSLKTIRRCGVERGFKDKPYP-RLVKMVLSATLTQDPNKLAQLDLHH---P 246
L ++FGS +ER FK P P + ++ +AT+T + L + + P
Sbjct: 161 ----LSNSFGS-------DLERCFKVLPPPEKRQTLLFTATVTDEVRALKEKPVPEGKLP 209
Query: 247 LFLTTGET--RYKLPERLESYKLICESKLKPLYLVAL--LQSLGEEKCIVFTSSVESTHR 302
+F+ E+ + +P L + L S +K YL A+ L+ + IVF + ++
Sbjct: 210 VFVHEVESVDKVAIPATLTTNYLFIPSYVKEAYLNAVLALEENADSTVIVFVNRTQTAEL 269
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L + L ++ Q R +L F+ G ++L+++D +RG+D+ V V
Sbjct: 270 LRRTLRN---LEFRVASLHSEMPQIERINSLHRFKAGAARILIATDVASRGLDIPSVELV 326
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
VNYD PA YIHR GRTARAG+ G + + + +VKR
Sbjct: 327 VNYDMPADPDDYIHRVGRTARAGRKGESLSFVTEQDVKR 365
>gi|213647600|ref|ZP_03377653.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 364
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 182/400 (45%), Gaps = 73/400 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LAKLPAKR-QNLLFSATFSDDIKALAEKLLRN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R E++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+ P + Y+HR GRT RA G +L+ DE K + +
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
>gi|121699880|ref|XP_001268205.1| DEAD box RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
1]
gi|134034070|sp|A1CTZ2.1|DBP4_ASPCL RecName: Full=ATP-dependent RNA helicase dbp4
gi|119396347|gb|EAW06779.1| DEAD box RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
1]
Length = 823
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 183/420 (43%), Gaps = 68/420 (16%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRAL 60
SS F + I L RD+ + TGSGKTL++ +P+++ L R L AL
Sbjct: 66 SSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRRQWAEHDGLGAL 125
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 126 ILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREE--------------------- 164
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++ILV TPGR++ H++ T F +L LV+DE DR+L +Q + ++
Sbjct: 165 -QERLGRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIV--- 220
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
G L R+ ++ SAT T+ + LA+
Sbjct: 221 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 245
Query: 241 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L L P ++ ET P +L+ + +I K L + ++S + K +VF SS +
Sbjct: 246 LSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQKLDILWSFIRSNLKSKTMVFFSSGKQ 305
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+ H + I + G Q+Q R + F + K VL S+D RG+D V
Sbjct: 306 VRFVYESFRHM-QPGIPLMHLHGRQKQGGRLDIMTNFSQAKHCVLFSTDVAARGLDFPAV 364
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
+ V+ D P TYIHR GRTAR G+ GR L E + +L++ + PI I
Sbjct: 365 DWVIQMDCPEDADTYIHRVGRTARYGRDGRAVLFLDPSEE---EGMLKRLEQKKVPIEKI 421
>gi|269965345|ref|ZP_06179465.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
40B]
gi|269829991|gb|EEZ84220.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
40B]
Length = 447
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 182/403 (45%), Gaps = 66/403 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + Q+ I + +DL +S TGSGKTL++ LP++ ++L ++ RA+++
Sbjct: 25 FKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILA 84
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV ++ + L +G + D++ L + PK
Sbjct: 85 PTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPKF-------------- 130
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+VATPGRL DH++ R L+ L L++DE DR+L
Sbjct: 131 -------IVATPGRLADHLD-HRSLYLDGLETLILDEADRMLDLG--------------- 167
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLD 242
F P L+ I + R R ++ SATL D N++A
Sbjct: 168 ----------FAPE----LRRIHKAAKHR--------RRQTLMFSATLDHADVNEIAAEM 205
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L+ P + G + + + + + L K L +L + I+FT++ + T R
Sbjct: 206 LNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIFTATRDDTER 265
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LN E ++K SG Q+ R+ + F ++LV++D +RG+D+ V +V
Sbjct: 266 LTEKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHV 322
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+N+D P + + Y+HR GRT RAG G +L+ + FK++
Sbjct: 323 INFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 365
>gi|258578509|ref|XP_002543436.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903702|gb|EEP78103.1| predicted protein [Uncinocarpus reesii 1704]
Length = 789
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 144/508 (28%), Positives = 220/508 (43%), Gaps = 124/508 (24%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G S PVQ AV + G + D+CI++ TGSGKTLSY LP++ T+ V LRAL
Sbjct: 267 QGYSQAMPVQSAVIPLALN-GKHDGDICISAATGSGKTLSYVLPLISTIEPFPVGQLRAL 325
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
+V+PTR+L QV+ P GL +G AVG +++ E S L + YDP
Sbjct: 326 IVVPTRELVKQVRKTCDLFVPGTGLRIGTAVGSTALRSEQSLLT-----DLDQAYDP--- 377
Query: 121 LQELQSAVDILVATPG----RLMDHINATR------------GFTLEHLCYLVVDETDRL 164
+ L++ +I + L D+I+ ++ F + ++V+DE DRL
Sbjct: 378 -RFLENNSNIFTSNSDWANFNLQDYISESKELHDALPNHLSTPFANVDILWVVIDEADRL 436
Query: 165 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 224
L E++Q W TV+ S S +T +P + G G + PR K
Sbjct: 437 LNESFQEWASTVIPAIESK-----SSYTTSIP--------LNAEGSSVGHRS---PR--K 478
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFL--------------TTGETR---YKLPERLESYKL 267
++LSAT+T+D +KL L L +P FL T G T+ Y+LP L +
Sbjct: 479 IILSATMTKDVSKLNSLRLRNPKFLEVHATSNEKISSQGTIGNTQSECYQLPTTLNEIIV 538
Query: 268 -ICESKLKPLYLVALLQSLGEEKCIVFTSSVEST-----HRL-------------CTL-- 306
+ + KPL L+ L+ S C TS+ T HR CT
Sbjct: 539 PVGDGSDKPLVLLELMISF--LNCATSTSTPVPTKPAKYHRSSSESSDSFDNDLSCTSPM 596
Query: 307 ---LNHFGELRIKIKEYSGLQRQSVRSKTLK-AFREGKIQVLVSSD-------------- 348
LN + K + + +K+ + A R G++ LV+ D
Sbjct: 597 GRELNSHHNVTCNSKPTTMWPSALIFTKSSENAGRLGRLLTLVNPDLADKIGVLVKSNKS 656
Query: 349 --------AMTRG--------------MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
A +G +D+ + +V++YD P +YIHR GRTARAGQ
Sbjct: 657 NAARKTLAAYQQGKVRIIIATDRASRGLDLPFLEHVISYDIPLSATSYIHRVGRTARAGQ 716
Query: 387 LGRCFTLLHKDEVKRFKKLLQKADNDSC 414
G ++L+ +E + F + K +D+
Sbjct: 717 QGTAWSLVTHNEGRWFSNEIIKGISDTA 744
>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
Length = 480
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 123/435 (28%), Positives = 187/435 (42%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G G+
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFG-------------------GVS 115
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+P+ + L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 116 INPQ--IDALKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRML--------- 163
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K PR ++ SAT + +
Sbjct: 164 -----------------------DMGFIHDIKRVLA------KLPPRRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPREVIAGFEP 379
>gi|392403376|ref|YP_006439988.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
gi|390611330|gb|AFM12482.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
Length = 603
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 182/398 (45%), Gaps = 72/398 (18%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ----------TLSNRAVRC 56
FP + ETI L RDL + TGSGKTL+Y LPI+Q T V
Sbjct: 21 FPEPTPIQAETIPLALNNRDLIACAKTGSGKTLAYLLPILQFVHEKIEKGETHGEDGVNP 80
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
ALV+ PTR+L +Q+ + A A GL + G G+ +D
Sbjct: 81 PVALVLAPTRELVVQIAEEAEFFADAAGLKLATIYG-------------------GVDHD 121
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
+ +EL ++VATPGRL+D + L + +V+DE DR+L + + +
Sbjct: 122 KQ--RRELAGGAQLIVATPGRLLDFLRGGEA-NLSKVVRIVLDEADRMLDMGFIDDVRKI 178
Query: 177 LQLTRSDNENRFSDASTFLPS-AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
L S NEN S F + F +L ++ F +P +++++ L
Sbjct: 179 LSKC-SPNENEERQFSLFSATINFSALYSVWE------FMREPE----EILINPELIDHA 227
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
N +AQ LH L E KLP YL+ L++ E I+FT+
Sbjct: 228 N-IAQEMLH----LGQDE---KLP-----------------YLIQFLENNKLEPVIIFTN 262
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
S + L LNH I S + Q+ R K L F++GK ++LV++D +RG+
Sbjct: 263 SRQYVDVLVKNLNHHN---IAAAGLSSMVTQNKRLKILDDFKDGKFRILVATDVASRGLH 319
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
+E V V+NYD P +TY+HR GRTARAG+ G+ ++
Sbjct: 320 IEDVQLVINYDIPMDPETYVHRIGRTARAGKTGKAISV 357
>gi|389841642|ref|YP_006343726.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
gi|387852118|gb|AFK00216.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
Length = 474
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 181/391 (46%), Gaps = 73/391 (18%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRDLALQVKDVF 76
L +DL ++ TG+GKT + LP++Q L+ + R +RAL++ PTR+LA QV
Sbjct: 36 LSGKDLMASAQTGTGKTAGFTLPLLQRLTANQPHPKGRRPVRALILTPTRELAAQV---- 91
Query: 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 136
G V + S +I L+ + G+ +P+ + +L+ VD+L+ATPG
Sbjct: 92 -----------GENVREYSKYLDIRSLV----VFGGVSINPQ--MMKLRGGVDVLIATPG 134
Query: 137 RLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 194
RL+D H NA + L+ + LV+DE DR+L
Sbjct: 135 RLLDLEHQNAVK---LDQVEVLVLDEADRML----------------------------- 162
Query: 195 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254
G + IRR K P+ ++ SAT + D LA+ LH+P +
Sbjct: 163 ---DMGFIHDIRRVLA------KLPPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVAR- 212
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
R E++ + + K K L L+ ++ +VFT + + L LN G
Sbjct: 213 RNTASEQVTQHVHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDG--- 269
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
I G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY+ P + Y
Sbjct: 270 ITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+HR GRT RA G +L+ DE K + +
Sbjct: 330 VHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
>gi|384048659|ref|YP_005496676.1| ATP-dependent RNA helicase [Bacillus megaterium WSH-002]
gi|345446350|gb|AEN91367.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
megaterium WSH-002]
Length = 481
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 172/381 (45%), Gaps = 79/381 (20%)
Query: 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80
L ERD+ + S TGSGKT S+ +P+ + L N +ALV+ PTR+LA QVK+ I
Sbjct: 38 ALEERDVVVKSQTGSGKTASFGIPLCE-LVNWEENKPQALVLTPTRELAAQVKEDITNIG 96
Query: 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 140
+ G+S A + K+ EL+ I+V TPGR++D
Sbjct: 97 RFKRIKAAAVYGKSPFA--------KQKV-------------ELKQKTHIVVGTPGRVLD 135
Query: 141 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 200
HI LE + YLV+DE D +L + + ++Q LPS
Sbjct: 136 HIEK-ETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQ---------------HLPS--- 176
Query: 201 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-------FLTTGE 253
ER V M+ SATL +D +L++ + P+ LTT
Sbjct: 177 ----------ER----------VTMLFSATLPEDIEELSRKYMKKPVDVEIKANGLTTST 216
Query: 254 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313
+ + + E++ K L + + CI+F + E + L L+ FG
Sbjct: 217 IDHSV--------ITVENERKFELLKDVTTVENPDSCIIFCRTQEQVNTLLDDLDDFGYP 268
Query: 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
KI G Q R + + F++GK + LV++D RG+D++ + +V+NYD P ++
Sbjct: 269 CDKI---HGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDIDNITHVINYDLPLEKES 325
Query: 374 YIHRAGRTARAGQLGRCFTLL 394
Y+HR GRT RAG+ G+ T +
Sbjct: 326 YVHRTGRTGRAGKKGKAITFV 346
>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
z3032]
Length = 500
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 187/397 (47%), Gaps = 76/397 (19%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLRALVVLPTRDLALQVKDVF 76
L +DL ++ TG+GKT + LP++Q L+ +A R +RAL++ PTR+LA QV
Sbjct: 38 LSGKDLMASAQTGTGKTAGFTLPLLQRLTAKAPHAQGRRPVRALILTPTRELAAQV---- 93
Query: 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 136
G V + S +I L+ + G+ +P+ + +L+S VD+L+ATPG
Sbjct: 94 -----------GENVREYSKYLDIRSLV----VFGGVSINPQ--MMKLRSGVDVLIATPG 136
Query: 137 RLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 194
RL+D H NA + L+ + LV+DE DR+L
Sbjct: 137 RLLDLEHQNAVK---LDQVEVLVLDEADRML----------------------------- 164
Query: 195 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254
G + IRR K P+ ++ SAT + D LA+ L +P +
Sbjct: 165 ---DMGFIHDIRRVLA------KLPPKRQNLLFSATFSDDIKTLAEKLLRNPEEVEVAR- 214
Query: 255 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
R E++ + + K K L L+ ++ +VFT + + L LN G
Sbjct: 215 RNTASEQITQHVHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDG--- 271
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
I G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY+ P + Y
Sbjct: 272 ITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 331
Query: 375 IHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+HR GRT RA G +L+ DE ++ +++LQ+
Sbjct: 332 VHRIGRTGRAAATGEALSLVCVDEHKLLRDIERVLQR 368
>gi|423199521|ref|ZP_17186104.1| hypothetical protein HMPREF1171_04136 [Aeromonas hydrophila SSU]
gi|404629082|gb|EKB25846.1| hypothetical protein HMPREF1171_04136 [Aeromonas hydrophila SSU]
Length = 406
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 187/417 (44%), Gaps = 72/417 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V Q I L RDL + TGSGKTL++ LP++Q L + A+ ++ LV++PTR+LA+QV
Sbjct: 26 VQQLAIPAALAGRDLLALARTGSGKTLAFGLPLLQRL-DPALAEVQGLVLVPTRELAVQV 84
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ A +GL + G A + +EL P+L LV
Sbjct: 85 SEALQGPAAGLGLRLVTLCGGVEQAQQQAELALGPQL---------------------LV 123
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL D + + TL L LV+DE DRLL + W P + L ++ + R
Sbjct: 124 ATPGRLRDLLG-QQLLTLAGLHTLVLDEADRLLEMGF--W-PDIQWLMKAMPDAR----- 174
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+M+ SATL + LA L P + T
Sbjct: 175 ------------------------------QQMLFSATLPAELEALATGLLKEPARVET- 203
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+ R + + +E + K L++LL++ + +VF S+ + + L G
Sbjct: 204 DPRNSVADDIEERLYLVNKSSKVPALISLLKAHEWPQVLVFISARDDADGVARKLAKAG- 262
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G + Q+VR + L F+ GK++VLV++D M RG+ VE + V+N D PA
Sbjct: 263 --IAVAALHGEKEQAVREQALGDFKAGKVRVLVATDLMARGIHVEALPLVINLDLPASAP 320
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL-------LQKADNDSCPIHSIPSS 422
Y+HR GRTARAG+ G +L E + L AD P+ P+S
Sbjct: 321 VYVHRIGRTARAGRSGLAISLTCHGEADTLAAIRTLTGRELPLADLTGFPVTDKPAS 377
>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
17241]
gi|167668347|gb|EDS12477.1| DEAD/DEAH box helicase [Anaerotruncus colihominis DSM 17241]
Length = 439
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 173/383 (45%), Gaps = 71/383 (18%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-----CLRALVVLPTR 66
A+ Q+ I P L D+ + TG+GKT ++A+PI+Q L + +RALV+ PTR
Sbjct: 44 AIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPILQRLDTQCASIKTPCVIRALVLTPTR 103
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA+Q+KD F + + L + G G+ P+ + EL+
Sbjct: 104 ELAIQIKDSFQSYGRYMRLRSTVVFG-------------------GVPQTPQ--VDELRR 142
Query: 127 AVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VDILVATPGRL D I +G L + V+DE DR+L + + V+ + +
Sbjct: 143 GVDILVATPGRLNDLIG--QGIIDLSSVSVFVLDEADRMLDMGFIHDVERVINHLPNKRQ 200
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
F A+ +P A M L + DP K+A +
Sbjct: 201 TLFFSAT--MPKAI-------------------------MHLCDRILTDPVKVAVTPVSS 233
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
P+ E +E + K L+ LL+ + +VFT + R+
Sbjct: 234 PV------------EAIEQRLYFVDKPNKRRLLIYLLEDVSIVSALVFTFTKHGADRVAR 281
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
L G IK + G + Q R + L AF+ G I+VLV++D RG+D++ +++V NY
Sbjct: 282 ELVKAG---IKAQAIHGDKSQGARQRALSAFKNGDIRVLVATDIAARGIDIDELSHVFNY 338
Query: 366 DKPAYIKTYIHRAGRTARAGQLG 388
D P +TY+HR GRT RAG G
Sbjct: 339 DLPNIPETYVHRIGRTGRAGLGG 361
>gi|156086188|ref|XP_001610503.1| DEAD/DEAH box helicase family protein [Babesia bovis T2Bo]
gi|154797756|gb|EDO06935.1| DEAD/DEAH box helicase family protein [Babesia bovis]
Length = 497
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 187/428 (43%), Gaps = 79/428 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
GI+ LFPVQ V I + +R D+ I +PTG G R
Sbjct: 54 GITDLFPVQKQVIPWLINCDVLDRFSSSACDIVITAPTGQG------------------R 95
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
L AL++ PTR+L Q D +S+ D + R L G
Sbjct: 96 GLCALILAPTRELVKQTYD----------FCTWFLEDDASVYDLKGGTLLRAHLCYGSTS 145
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHIN---ATRGFTLEH--LCYLVVDETDRLLREAYQ 170
+D L+ + I++ TPGR ++H N ++ G L++ + ++V+DE D LL ++Y
Sbjct: 146 FVDDHTYLLEHSPQIVLFTPGRFVEHYNHRNSSCGKILDYSSIRWMVIDEVDMLLSQSYF 205
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W V ++R E + + L ++F P R K+++SAT
Sbjct: 206 NWTSVVTSISRECQEKQ-----SLLDTSF------------------PVVRPQKILVSAT 242
Query: 231 LTQDPNKLAQLDL---HHPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQSLG 286
+ P K A++DL + PL + + + Y LP L + + KPL L LL +
Sbjct: 243 I---PTKSAEIDLIQLNRPLLMKSRSQALYSLPANLTQWYIKTTKNNKPLVLAKLLLHIM 299
Query: 287 E-----EKCIVFTSSVESTHRLCTLLN----HFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
+K IVF S ++ H + +L H G ++ E S Q R + FR
Sbjct: 300 ANGSTGDKTIVFCSYRQTAHAMVRMLELFSIHTGH-NLRSLELSASLSQKQRHDVVDMFR 358
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+G LV SD +RGM+ NV+NYD P I YIHR GRTARA + G + LL
Sbjct: 359 KGDSFCLVCSDVASRGMNFSNTRNVINYDFPTSIAKYIHRIGRTARAYESGNSYILLTGQ 418
Query: 398 EVKRFKKL 405
+V F+K
Sbjct: 419 QVVGFQKF 426
>gi|418299490|ref|ZP_12911323.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens CCNWGS0286]
gi|355534955|gb|EHH04251.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens CCNWGS0286]
Length = 501
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 188/412 (45%), Gaps = 88/412 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L+V L +G G+ ++ +D
Sbjct: 77 LILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVSFEDQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERIAKMIPFTRQT-LFFSATMPPEIQKL 195
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GEE---- 288
A L +P TR ++ + + K + + + K A+L+ L EE
Sbjct: 196 ADRFLQNP-------TRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAEEAELK 248
Query: 289 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
I+F + + L L+ G + G Q R+ L+ FR+G + +LV+SD
Sbjct: 249 NAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGNLSLLVASD 305
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 306 VAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 357
>gi|336386445|gb|EGO27591.1| hypothetical protein SERLADRAFT_360268 [Serpula lacrymans var.
lacrymans S7.9]
Length = 520
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 188/410 (45%), Gaps = 53/410 (12%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
M I + +QVA I P L RD N+ TGSGKT+++ALPI+Q LS AL
Sbjct: 96 MSIRTPTEIQVAC----IPPLLSGRDCIGNAKTGSGKTIAFALPILQKLSEDPYGIF-AL 150
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ D FA + + + + VG + + EL RP
Sbjct: 151 VLTPTRELAFQISDQFAVLGAGLSIRTAVIVGGMDMMTQALELDNRPH------------ 198
Query: 121 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++VATPGR++DH+ ++ G ++L + +LV+DE DRLL + L + +
Sbjct: 199 ---------VVVATPGRIVDHLRSSSGEWSLSRIKFLVLDEADRLLTPTFSPELSYLFDV 249
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD----P 235
+ + A T PS + R G ++ F + + +V TL Q+ P
Sbjct: 250 LPKERQTCLFTA-TLTPSIDKLAEVPPRPGKQKPFIHRMNANIETVV---TLNQNFVLVP 305
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
+ + + L+H L PE S + I K L+Q I+F +
Sbjct: 306 SHVRETYLYHLL--------CNPPELAASLRRIPPDTEK----RELVQP---PPTIIFCT 350
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ L +LL L I+ Q R +L FR I VLVS+D RG+D
Sbjct: 351 KPRTAAYLTSLLK---TLSIRSTALHSRLTQRERLTSLSLFRSSVIPVLVSTDVGARGLD 407
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+E V V+N+D P + Y HR GRTARAG+ G + + + + +R K+
Sbjct: 408 IEDVAMVINWDLPNEPEEYTHRVGRTARAGKAGIAISFVTEKDEERVLKI 457
>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|335036272|ref|ZP_08529599.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|333792163|gb|EGL63533.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
Length = 503
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 189/412 (45%), Gaps = 88/412 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L+V L +G G+ ++ +D
Sbjct: 77 LILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVSFEDQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERIAKMIPFTRQT-LFFSATMPPEIQKL 195
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GEE---- 288
A L +P TR ++ + + K + + + K A+L+ L EE
Sbjct: 196 ADRFLQNP-------TRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAEEAELK 248
Query: 289 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
I+F + + L L+ G + G Q R+ L+ FR+G++ +LV+SD
Sbjct: 249 NAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASD 305
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 306 VAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 357
>gi|320583039|gb|EFW97255.1| Cytoplasmic DExD/H-box helicase [Ogataea parapolymorpha DL-1]
Length = 451
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 192/429 (44%), Gaps = 65/429 (15%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E I L RD+ + G+GKT ++ +P ++ L + V ++A
Sbjct: 42 MGIFEAGFEKPSPIQEEAIPVALMGRDILARAKNGTGKTAAFVIPTLEKLKPK-VNKIQA 100
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + +G+ V + G +S+ D+I
Sbjct: 101 LILVPTRELALQTSQVVKTLGAHLGIQVMVTTGGTSLRDDI------------------- 141
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL-VVDETDRLLREAYQAWLPTVLQ 178
L V +LV TPGR++D A+R C + V+DE D++L ++ + +L+
Sbjct: 142 --MRLHEPVHVLVGTPGRVLDL--ASRKLAEFDECRMFVMDEADKMLSREFKNIIEQILK 197
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F P + G G++ + + + + + Q K
Sbjct: 198 ---------------FFPQS--------SSGKGNGYQSLLFSATFPLAVKSFMDQHLYKP 234
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 235 YEINLMDELTLKGITQYYAFVE--EKQKLHC--------LNTLFSKLQINQSIIFCNS-- 282
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
T+R+ L EL Q+ R+K FR+GK++ LV SD +TRG+D++
Sbjct: 283 -TNRVELLSKKITELDYSCYYSHAKMPQAARNKVFHEFRQGKVRNLVCSDLLTRGIDIQA 341
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418
VN VVN+D P +TY+HR GR+ R G G L++ ++ K+ Q+ + P
Sbjct: 342 VNVVVNFDFPKTAETYLHRIGRSGRFGHFGIAINLINWNDRFNLYKIEQELGTEIKP--- 398
Query: 419 IPSSLIESL 427
IP+ + +SL
Sbjct: 399 IPAEIDKSL 407
>gi|58177858|gb|AAH89107.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
Length = 598
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 182/414 (43%), Gaps = 64/414 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + + I L R+L ++PTGSGKTL++++PI+ L + RALV+ PTR
Sbjct: 186 FQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTR 245
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ I+ G + + + +++IA + + P+
Sbjct: 246 ELASQIHRELIKISEGTGFRIHM-IHKAAIAAK--------------KFGPKS-----SK 285
Query: 127 AVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DILV TP RL+ + G L + +LVVDE+D+L D +
Sbjct: 286 KFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLF----------------EDGK 329
Query: 186 NRFSD--ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
F D AS FL P++ + + SAT D + +L+L
Sbjct: 330 TGFRDQLASIFLACT--------------------SPKVRRAMFSATFAYDVEQWCKLNL 369
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHR 302
+ + ++ G R E +E L S+ K L + L++ +VF S+E
Sbjct: 370 DNIVSVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKE 428
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L + G I + + Q R T+ +FR GKI VL+ + + RG+D +GVN V
Sbjct: 429 LFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLV 485
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+NYD P YIHR GRT RAG G+ T +D+ + + CP+
Sbjct: 486 INYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9]
gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9]
Length = 582
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 176/394 (44%), Gaps = 71/394 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------NRAVRCLRALVVLPTR 66
+ +E I P L RDL + TG+GKT +ALP++Q L+ + A R R LV+ PTR
Sbjct: 30 IQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLLQRLAATHPHPHPAGRP-RGLVLTPTR 88
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA QV + A + + L+ + G + +I L +R
Sbjct: 89 ELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQIEALTQR-------------------- 128
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
VDIL+ATPGRL+D + L + LV+DE DR+L + + VL+L ++ +N
Sbjct: 129 -VDILIATPGRLID-LAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPAERQN 186
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
++ SAT D LA LH P
Sbjct: 187 --------------------------------------LLFSATFNDDIKALADTFLHDP 208
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ E + + + + K L L++S ++ +VFT + +RL +
Sbjct: 209 QLVEVSPPNSTT-ELVTHHVHLVDRNRKRELLTHLVESRQWQQVLVFTRTKHGANRLAEV 267
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G I G + Q R++ L F++G ++VLV++D RG+D+ + VVNY+
Sbjct: 268 LAKGG---IPAAAIHGNKSQGARTRALSEFKDGSLRVLVATDIAARGIDISELPQVVNYE 324
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
P + Y+HR GRT RAG G +L+ DE+K
Sbjct: 325 LPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELK 358
>gi|47228482|emb|CAG05302.1| unnamed protein product [Tetraodon nigroviridis]
Length = 599
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 189/441 (42%), Gaps = 95/441 (21%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+ S + PVQ A I + +D+ + TGSGKTL++ +PI++ L R + +
Sbjct: 27 LKFSHMTPVQSAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPIIELLLKREEKLKKMQ 82
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
ALV+ PTR+LALQ+ V + L +G S+
Sbjct: 83 VGALVITPTRELALQISQVMEQFLQRFPQFTQILLIGGSNPI------------------ 124
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY------LVVDETDRLLREAY 169
EDV + +I++ATPGRL D + L+ C+ LV+DE DRLL +
Sbjct: 125 --EDVEKFKDQGANIVIATPGRLEDMFK-RKADGLDLACWVKSLEVLVLDEADRLLDMGF 181
Query: 170 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
+A L +L G L RR G+ SA
Sbjct: 182 EASLNAIL----------------------GHLPKQRRTGL----------------FSA 203
Query: 230 TLTQDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKLICESKLKPLYLVALLQ 283
T TQ+ KL + L +P+ +T E K P RL +Y IC S+ K +LVA L+
Sbjct: 204 TQTQELEKLVRAGLRNPVRITVKEKGAAASAVQKTPSRLSNYYTICRSEDKFNHLVAFLR 263
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGL----QRQSVRSKTLKAFRE 338
EK +VF S+ C + +FG L IK+ + + + R+K FR
Sbjct: 264 QHKHEKNLVFFST-------CACVEYFGRALETLIKKANVCCIHGKMKDKRNKIFAEFRS 316
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
K +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 317 LKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTARIGNQGNALVFLLPME 376
Query: 399 VKRFKKLLQKADNDSCPIHSI 419
L + N CP+ +
Sbjct: 377 ESYVNFL---SINQKCPLQKM 394
>gi|366994109|ref|XP_003676819.1| hypothetical protein NCAS_0E03920 [Naumovozyma castellii CBS 4309]
gi|342302686|emb|CCC70462.1| hypothetical protein NCAS_0E03920 [Naumovozyma castellii CBS 4309]
Length = 437
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 186/406 (45%), Gaps = 74/406 (18%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD + TGSGKT+++A P++ S + +V+ PTR+LA+Q+ + F A+ ++
Sbjct: 45 RDCIGGAKTGSGKTVAFAAPMLTKWSEDP-SGMFGVVLTPTRELAMQIAEQFTALGSSMN 103
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
+ V L VG SI D+ +L K+P ++ATPGRL HI +
Sbjct: 104 IRVALVVGGESIVDQAIQLQKKPHF---------------------IIATPGRLAHHIMS 142
Query: 145 TRGFT---LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
+ T L+ +LV+DE D LL + + + L T + LPS
Sbjct: 143 SGEDTIGGLKRAKFLVLDEADSLLTDTFASDLATCIGA---------------LPS---- 183
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH---PLFLTTGET--RY 256
KDK ++ +AT+T L + PLF E+ +
Sbjct: 184 -------------KDKRQ----TLLFTATITDQVRALEDAPIQEGKPPLFTYQVESVDKV 226
Query: 257 KLPERLESYKLICESKLKPLYLVALL--QSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314
+P L++ ++ +K YL LL ++ + I+F + + L L H L
Sbjct: 227 AIPSTLKTEYILVPEHVKEAYLYQLLTCETYKDSSAIIFVNRTMTAEILRRTLYH---LE 283
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
+++ Q R+ +L FR +VL+++D +RG+D+ V V+NYD PA T+
Sbjct: 284 VRVASLHSQMPQQERTNSLHRFRANVARVLIATDVASRGLDIPTVELVINYDIPADPDTF 343
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKR---FKKLLQKADNDSCPIH 417
IHRAGRTARAG+ G + + + +V R +K + K +S +H
Sbjct: 344 IHRAGRTARAGRSGDAISFVTQRDVSRIEAIEKRINKKMTESDKVH 389
>gi|261193373|ref|XP_002623092.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
gi|239588697|gb|EEQ71340.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
Length = 810
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 184/421 (43%), Gaps = 70/421 (16%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRAL 60
+S F + + I L RD+ + TGSGKTL++ +P+++ L + L AL
Sbjct: 66 ASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPLLELLYRKQWTEYDGLGAL 125
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 126 VLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEE--------------------- 164
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++ILV TPGR++ H++ T F H+ LV+DE DR++ +Q+ + ++
Sbjct: 165 -QERLGRMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIID-- 221
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
LP ER M+ SAT T+ + LA+
Sbjct: 222 -------------HLPK-------------ER----------QTMLFSATQTKKVSDLAR 245
Query: 241 LDLHHPLFLTTGETRYK-LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L L +P +++ ET P +L+ ++ K L + ++S + K +VF SS +
Sbjct: 246 LSLRNPEYISVHETAASATPAKLQQNYIVTPLPEKLDTLWSFIRSSLKSKIMVFFSSGKQ 305
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+ H + I + G Q+Q R K F K L S+D RG+D V
Sbjct: 306 VRFVYESFRHM-QPGISLLHLHGRQKQGARVDITKKFSAAKHACLFSTDIAARGLDFPAV 364
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHS 418
+ V+ D P TYIHRAGRTAR + GR L +E K+L QK PI
Sbjct: 365 DWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEAGMLKRLEQK----KIPIEK 420
Query: 419 I 419
I
Sbjct: 421 I 421
>gi|239613981|gb|EEQ90968.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ER-3]
gi|327353332|gb|EGE82189.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ATCC
18188]
Length = 810
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 184/421 (43%), Gaps = 70/421 (16%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRAL 60
+S F + + I L RD+ + TGSGKTL++ +P+++ L + L AL
Sbjct: 66 ASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPLLELLYRKQWTEYDGLGAL 125
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 126 VLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEE--------------------- 164
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++ILV TPGR++ H++ T F H+ LV+DE DR++ +Q+ + ++
Sbjct: 165 -QERLGRMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIID-- 221
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
LP ER M+ SAT T+ + LA+
Sbjct: 222 -------------HLPK-------------ER----------QTMLFSATQTKKVSDLAR 245
Query: 241 LDLHHPLFLTTGETRYK-LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L L +P +++ ET P +L+ ++ K L + ++S + K +VF SS +
Sbjct: 246 LSLRNPEYISVHETAASATPAKLQQNYIVTPLPEKLDTLWSFIRSSLKSKIMVFFSSGKQ 305
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+ H + I + G Q+Q R K F K L S+D RG+D V
Sbjct: 306 VRFVYESFRHM-QPGISLLHLHGRQKQGARVDITKKFSAAKHACLFSTDIAARGLDFPAV 364
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHS 418
+ V+ D P TYIHRAGRTAR + GR L +E K+L QK PI
Sbjct: 365 DWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEAGMLKRLEQK----KIPIEK 420
Query: 419 I 419
I
Sbjct: 421 I 421
>gi|261193383|ref|XP_002623097.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
gi|239588702|gb|EEQ71345.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
Length = 945
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/400 (27%), Positives = 183/400 (45%), Gaps = 39/400 (9%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 65
F V + ++TI L ++D+ + TGSGKT ++ +P+++ L N + + RAL++LP+
Sbjct: 106 FSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEKLKNHSAKFGSRALILLPS 165
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ V + L L VG S+ ++ + P
Sbjct: 166 RELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGNP------------------ 207
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DI++ATPGR + H+ L + Y+V DE DRL + A L +L S +
Sbjct: 208 ---DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSRQ 263
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLA 239
A+ LP SL R G++ + K P L + ++ L
Sbjct: 264 TLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISPDLQNAFFTVKSSEKEGALL 318
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L LH + + TGET + E+ K + K + +S E I+FT++
Sbjct: 319 HL-LHEVIKIPTGETEAHKRAKEEA-KNPRKRKRSEFASNSHKESPTEHSTIIFTATKHH 376
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L ++L G + G Q+ R ++ FR G +LV +D RG+D+ +
Sbjct: 377 VDYLVSILRISG---FAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPIL 433
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 434 SNVINYDFPSQAKIFVHRVGRTARAGKTGWSYSLIRESDA 473
>gi|425777534|gb|EKV15702.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
Pd1]
gi|425779558|gb|EKV17605.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
PHI26]
Length = 912
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 181/396 (45%), Gaps = 39/396 (9%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 65
F V + ++TI + ++D+ + TGSGKT S+ +P+++ L + + RAL++ P+
Sbjct: 104 FSVPTPIQRKTIPVIMDDKDVVGMARTGSGKTASFVIPMIEKLKSHSTSFGARALIMSPS 163
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ V + L+ L +G S+ D+ + P
Sbjct: 164 RELALQTLKVVKEMGKGTNLTSVLLIGGDSLEDQFGMMANNP------------------ 205
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DI++ATPGR + H+ L + Y+V DE DRL + A L +L ++ +
Sbjct: 206 ---DIIIATPGRFL-HLKVEMDMDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPTNRQ 261
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLA 239
A+ LP SL R G++ ++K P L + + L
Sbjct: 262 TLLFSAT--LPK---SLVEFARAGLQEPSLIRLDTENKVSPDLQNAFFAVKSSDKEGALL 316
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL-VALLQSLGEEKCIVFTSSVE 298
+ LH+ + + TGET+ R E+ + K + L +S E IVF ++
Sbjct: 317 HI-LHNIIKMPTGETQIGGKLRQEAENPTRKRKRSDVRLPSGFKESPTEHSTIVFAATKH 375
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
L +LL G G Q+ R+ ++ FR G +LV +D RG+D+
Sbjct: 376 HVDYLYSLLVEAG---FATSYAYGSLDQTARNHHVQNFRSGISNILVVTDVAARGIDIPV 432
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ NV+NYD P+ K +IHR GRTARAGQ G ++L+
Sbjct: 433 LANVINYDFPSQPKIFIHRVGRTARAGQKGWSYSLV 468
>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
Length = 463
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 179/397 (45%), Gaps = 78/397 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
GI P+Q E P + E RD+ + TG+GKT ++ LPI++ L AV ++AL
Sbjct: 21 GIGKPTPIQ-----EQAIPAVMEGRDIIAQAQTGTGKTFAFILPILEKLDPDAVH-IQAL 74
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-RPKLEAGICYDPED 119
+V PTR+LALQ I DE+ +L LE Y +D
Sbjct: 75 IVTPTRELALQ------------------------ITDEVQKLTAGDDDLEVLAVYGGQD 110
Query: 120 V---LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
V L +L+ V I+V TPGRL+DHI + L +LV+DE D++L
Sbjct: 111 VDKQLNKLKKKVQIVVGTPGRLLDHIK-RKTIDLSQADFLVLDEADQMLHIG-------- 161
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
FL VE K+ P R M+ SAT+ +
Sbjct: 162 -----------------FLDE------------VEDIIKETPGKRQT-MLFSATIPAEIR 191
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
LA+ + P ++ +T+ + ++ + + K L+ L+Q+ ++F +
Sbjct: 192 NLARKHMKEPEYMQIEKTQGP-AQSVKQIAIHTIDRAKQATLMQLIQTHRPYLAVIFCRT 250
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+L +L G + E G QS R + +K FR+ ++Q+LV++D RG+DV
Sbjct: 251 KRRVSKLNDVLKSNG---FQCDELHGDLSQSKREQVMKRFRDAELQLLVATDVAARGLDV 307
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
EGV +V NYD P ++Y+HR GRT RAG G T
Sbjct: 308 EGVTHVFNYDIPLDPESYVHRIGRTGRAGMKGMAITF 344
>gi|260820614|ref|XP_002605629.1| hypothetical protein BRAFLDRAFT_283402 [Branchiostoma floridae]
gi|229290964|gb|EEN61639.1| hypothetical protein BRAFLDRAFT_283402 [Branchiostoma floridae]
Length = 591
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 193/416 (46%), Gaps = 84/416 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+G + PVQ A I + +D+ + TGSGKTL++ +PI++ L R LR
Sbjct: 23 LGFQHMTPVQAAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPILEILQRR-TETLRKH 77
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSS-IADEISELIKRPKLEAGI 113
AL++ PTR+LALQ+ +V +A + LS L +G + +AD IK+ +
Sbjct: 78 EVGALIITPTRELALQIDEVISAFTKRLPQLSQLLLIGGGNPVAD-----IKKYQ----- 127
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFT----LEHLCYLVVDETDRLLREA 168
++ +I+V TPGRL D + G L+ L LV+DE DRLL
Sbjct: 128 -----------ENGANIIVCTPGRLEDILRRKEDGLNLAGHLKSLEVLVLDEADRLLDMG 176
Query: 169 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 228
++ + T+L ++LP RR G + S
Sbjct: 177 FEMSINTIL---------------SYLPKQ-------RRTG----------------LFS 198
Query: 229 ATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLVALL 282
AT T++ L + L +P+ +T E + + P L++ ++C S K +LVA L
Sbjct: 199 ATQTKEVEALVRAGLRNPVRITVKEKNVAENVQQRTPASLDNLYMMCRSDEKFNHLVAFL 258
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+S G EK +VF S+ + L + ++ G +Q R+K FR+ +
Sbjct: 259 RSHGNEKHMVFFSTCAGVDYFSSALRELLK-NTRVMSIHGKMKQK-RNKIFAQFRQAESG 316
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
VLV +D M RG+D+ VN V+ +D P+ ++HR+GRTAR G+ G L +E
Sbjct: 317 VLVCTDVMARGVDIPEVNWVLQFDPPSNASAFVHRSGRTARMGREGSAVVFLLPEE 372
>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
Length = 480
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G SI P+++A
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI---------NPQIDA--- 122
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 123 ---------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRML--------- 163
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K PR ++ SAT + +
Sbjct: 164 -----------------------DMGFIHDIKRVLA------KLPPRRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPREVIAGFEP 379
>gi|404497424|ref|YP_006721530.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|418066827|ref|ZP_12704184.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|373559816|gb|EHP86098.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
Length = 451
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 187/409 (45%), Gaps = 73/409 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G ++ P+Q P + E RD+ + TG+GKT ++ALPI+ L+ +RAL
Sbjct: 20 GYTTPTPIQAQAI-----PTVMEGRDVMGLAQTGTGKTAAFALPILHRLAQGERGRVRAL 74
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ D F + +G+ + ++ + G+ +P+
Sbjct: 75 VIAPTRELAEQINDSF------------VTLGRQTRLRSVT-------VYGGVNVNPQ-- 113
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+Q+L++ +I+VA PGRL+DH+ A L HL LV+DE D++
Sbjct: 114 IQKLKAGAEIVVACPGRLLDHM-AQGTIDLSHLEVLVLDEADQMF--------------- 157
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
G L +RR K P P+ ++ SAT+ D LAQ
Sbjct: 158 -----------------DMGFLPDLRRI-----LKQLP-PKRQTLLFSATMPIDIRVLAQ 194
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L P+ + G P ++ L E LK L+ LL+ E ++FT +
Sbjct: 195 EILRDPVTVQVGTV---APAVTVTHALYPVEQHLKTPLLLELLRHTDTESVLIFTRTKHR 251
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
RL + G K G Q+ R L FR+G Q+LV++D RG+DV V
Sbjct: 252 AKRLGEQMEKAG---YKAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQV 308
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
++V+NYD P + YIHR GRT RA + G FT++ ++ + + +K
Sbjct: 309 SHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTMVTSEDTAMVRTIERK 357
>gi|119351037|gb|ABL63414.1| ATP-dependent RNA helicase [Rattus norvegicus]
Length = 598
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 182/414 (43%), Gaps = 64/414 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + + I L R+L ++PTGSGKTL++++PI+ L + RALV+ PTR
Sbjct: 186 FQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTR 245
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ I+ G + + + ++++A + + P+
Sbjct: 246 ELASQIHRELIKISEGTGFRIHM-IHKAAVAAK--------------KFGPKS-----SK 285
Query: 127 AVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DILV TP RL+ + G L + +LVVDE+D+L D +
Sbjct: 286 KFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLF----------------EDGK 329
Query: 186 NRFSD--ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
F D AS FL P++ + + SAT D + +L+L
Sbjct: 330 TGFRDQLASIFLACT--------------------SPKVRRAMFSATFAYDVEQWCKLNL 369
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHR 302
+ + ++ G R E +E L S+ K L + L++ +VF S+E
Sbjct: 370 DNIVSVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKE 428
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L + G I + + Q R T+ +FR GKI VL+ + + RG+D +GVN V
Sbjct: 429 LFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLV 485
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+NYD P YIHR GRT RAG G+ T +D+ + + CP+
Sbjct: 486 INYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>gi|147899081|ref|NP_001086608.1| ATP-dependent RNA helicase DDX55 [Xenopus laevis]
gi|82199952|sp|Q6AZV7.1|DDX55_XENLA RecName: Full=ATP-dependent RNA helicase DDX55; AltName: Full=DEAD
box protein 55
gi|50603912|gb|AAH77172.1| Ddx55-prov protein [Xenopus laevis]
Length = 594
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 124/446 (27%), Positives = 196/446 (43%), Gaps = 95/446 (21%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+ + + PVQ A TI + +D+ + TGSGKTL++ +P+++ L R + +
Sbjct: 27 LKFTHMTPVQSA----TIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKLKKNQ 82
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
AL++ PTR+LA+Q+ +V + S L +G S+ D
Sbjct: 83 VGALIITPTRELAVQIDEVLSCFTKHFPQFSQILLIGGSNPVD----------------- 125
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHI-NATRGFTL----EHLCYLVVDETDRLLREAYQ 170
DV + + +I+VATPGRL D G L + L L++DE DRLL ++
Sbjct: 126 ---DVRKFKEHGGNIIVATPGRLEDMFRRQADGLDLVICVKTLDVLILDEADRLLDMGFE 182
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
A + T+L FLP RR G + SAT
Sbjct: 183 ASINTIL---------------GFLPKQ-------RRTG----------------LFSAT 204
Query: 231 LTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLVALLQS 284
TQ+ L + L +P+ + E + K P RL++Y +IC++ K L+A LQ
Sbjct: 205 QTQELENLVRAGLRNPVRIAVKEKGVAATSTQKTPIRLQNYYMICKADEKFNKLIAFLQK 264
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELR------IKIKEYSGLQRQSVRSKTLKAFRE 338
+EK +VF S+ C + ++G+ +K+ G + R++ FR+
Sbjct: 265 RKQEKHLVFFST-------CACVEYYGKALEMLLKPVKVMCIHGKMKHK-RNRIFTEFRK 316
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
+LV +D M RG+D+ VN VV YD P+ ++HR GRTAR G G L E
Sbjct: 317 INSGILVCTDVMARGIDIHEVNWVVQYDPPSSASAFVHRCGRTARIGHHGSALVFLLPME 376
Query: 399 VKRFKKLLQKADNDSCPIHSIPSSLI 424
L + N CP+ + +I
Sbjct: 377 ESYVSFL---SINQKCPLQEMTELII 399
>gi|344303887|gb|EGW34136.1| hypothetical protein SPAPADRAFT_59553 [Spathaspora passalidarum
NRRL Y-27907]
Length = 431
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/416 (27%), Positives = 193/416 (46%), Gaps = 71/416 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
M I P+Q A P + + CI + TGSGKT+++A P++ S R +
Sbjct: 19 MKIHQPTPIQTACI-----PAILKGHDCIGGAKTGSGKTIAFAAPMLTDWSADP-RGIFG 72
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LALQ+ + FAA+ + + V + VG I + L + P
Sbjct: 73 LILTPTRELALQIAEQFAALGSNMNIKVSVIVGGEDIVTQALALQRNPHF---------- 122
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTV 176
++ATPGRL DH+ + T L+ + YLV+DE DRLL ++ + L
Sbjct: 123 -----------VIATPGRLADHVLNSGEETVAGLKRVKYLVLDEADRLLSNSFSSDLERC 171
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
++ S +ENR T L +A T+ R KD P
Sbjct: 172 FKVIPS-SENR----QTLLFTA-----TV--TDAVRALKDAPAKE--------------G 205
Query: 237 KLAQLDLHHPLFLTTGET--RYKLPERLESYKLICESKLKPLYLVAL--LQSLGEEKCIV 292
KL P+F+ ET + +P L + S +K YL ++ L+ ++ ++
Sbjct: 206 KL-------PVFMHEVETVDKVAIPNSLSIKYVFVPSYVKEAYLHSILSLEQYKDKTAVI 258
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F + + +C L +L ++ RQ+ R +L F+ G ++L+++D +R
Sbjct: 259 FVNRTITAEVICRTLR---KLEFRVASLHSQMRQTERINSLHRFKAGAARILIATDVASR 315
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
G+D+ V VVN+D PA +IHR GRTARAG+ G +++ + +V+R + ++
Sbjct: 316 GLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRKGDAVSIVGEKDVERIHAIEER 371
>gi|119351039|gb|ABL63415.1| ATP-dependent RNA helicase [Rattus norvegicus]
Length = 598
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 182/414 (43%), Gaps = 64/414 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + + I L R+L ++PTGSGKTL++++PI+ L + RALV+ PTR
Sbjct: 186 FQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTR 245
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ I+ G + + + ++++A + + P+
Sbjct: 246 ELASQIHRELIKISEGTGFRIHM-IHKAAVAAK--------------KFGPKS-----SK 285
Query: 127 AVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DILV TP RL+ + G L + +LVVDE+D+L D +
Sbjct: 286 KFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLF----------------EDGK 329
Query: 186 NRFSD--ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
F D AS FL P++ + + SAT D + +L+L
Sbjct: 330 TGFRDQLASIFLACT--------------------SPKVRRAMFSATFAYDVEQWCKLNL 369
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHR 302
+ + ++ G R E +E L S+ K L + L++ +VF S+E
Sbjct: 370 DNIVSVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKE 428
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L + G I + + Q R T+ +FR GKI VL+ + + RG+D +GVN V
Sbjct: 429 LFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLV 485
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+NYD P YIHR GRT RAG G+ T +D+ + + CP+
Sbjct: 486 INYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2255]
gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
Length = 461
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 187/417 (44%), Gaps = 81/417 (19%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLR 58
+G + P+Q E I L RD+ + TG+GKT + LP++ L+ RA R R
Sbjct: 20 VGYDTPTPIQ----SEAIPHALEGRDVLGIAQTGTGKTAGFTLPMIHKLARGRARARMPR 75
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
+LV+ PTR+LA QV + F A V L + L +G G+ + +
Sbjct: 76 SLVLAPTRELAAQVAENFEQYAKYVKLDMALLIG-------------------GVSFKDQ 116
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
D L + VD+L+ATPGRL+DH + L + +VVDE DR+L
Sbjct: 117 DRL--IDRGVDVLIATPGRLLDHFERGK-LLLTGIEIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER FK P+ R + SAT+ + N++
Sbjct: 164 ---------------FIPD------------IERIFKLTPFTRQT-LFFSATMAPEINRI 195
Query: 239 AQLDLHHPLFL------TTGE--TRYKLPERLESYKLICESKLKPLYLVALLQSLGEE-- 288
Q L +P + TT E T+ + + E+ KL E+K K L +++ GE+
Sbjct: 196 TQEFLQNPKLVEVARQATTSENITQNVICFKAENRKL--EAKKKRDLLRTIIKDEGEKLT 253
Query: 289 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
IVF + + L G + G Q R + L F+ I +LV+SD
Sbjct: 254 NGIVFCNRKVDVDIVMKSLKKHGH---SVGAIHGDLDQRYRMEVLAGFKNNDITLLVASD 310
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
RG+D+ V++V N+D P + + Y+HR GRT RAG+ G F L E+K K+
Sbjct: 311 VAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRKGWAFMLCLPHEIKHLDKI 367
>gi|260820656|ref|XP_002605650.1| hypothetical protein BRAFLDRAFT_232791 [Branchiostoma floridae]
gi|229290985|gb|EEN61660.1| hypothetical protein BRAFLDRAFT_232791 [Branchiostoma floridae]
Length = 449
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 193/416 (46%), Gaps = 84/416 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+G + PVQ A I + +D+ + TGSGKTL++ +PI++ L R LR
Sbjct: 23 LGFQHMTPVQAAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPILEILQRRT-ETLRKH 77
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSS-IADEISELIKRPKLEAGI 113
AL++ PTR+LALQ+ +V +A + LS L +G + +AD IK+ +
Sbjct: 78 EVGALIITPTRELALQIDEVISAFTKRLPQLSQLLLIGGGNPVAD-----IKKYQ----- 127
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFT----LEHLCYLVVDETDRLLREA 168
++ +I+V TPGRL D + G L+ L LV+DE DRLL
Sbjct: 128 -----------ENGANIIVCTPGRLEDILRRKEDGLNLAGHLKSLEVLVLDEADRLLDMG 176
Query: 169 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 228
++ + T+L ++LP RR G + S
Sbjct: 177 FEMSINTIL---------------SYLPKQ-------RRTG----------------LFS 198
Query: 229 ATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLVALL 282
AT T++ L + L +P+ +T E + + P L++ ++C S K +LVA L
Sbjct: 199 ATQTKEVEALVRAGLRNPVRITVKEKNVAENVQQRTPASLDNLYMMCRSDEKFNHLVAFL 258
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+S G EK +VF S+ + L + ++ G +Q R+K FR+ +
Sbjct: 259 RSHGNEKHMVFFSTCAGVDYFSSALRELLK-NTRVMSIHGKMKQK-RNKIFAQFRQAESG 316
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
VLV +D M RG+D+ VN V+ +D P+ ++HR+GRTAR G+ G L +E
Sbjct: 317 VLVCTDVMARGVDIPEVNWVLQFDPPSNASAFVHRSGRTARMGREGSAVVFLLPEE 372
>gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia]
Length = 475
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 182/405 (44%), Gaps = 80/405 (19%)
Query: 15 QETIGPGLFE-RDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRALVVLPTRDLALQV 72
Q+ I P +F+ D+ + TGSGKTL+YALP I+ + V R LV+ PTR+LA Q+
Sbjct: 129 QQAIMPLIFDGHDVIAIAETGSGKTLAYALPGIMHLQAQPPVAGPRILVMAPTRELAQQI 188
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ + A L G I +P + P+ +++
Sbjct: 189 QTQYDLFAKTCCLYGG---------------IPKPHQYVSLSETPQ-----------VII 222
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+D I G TL+ + +V+DE DR+L ++ + VL+ R D + F A+
Sbjct: 223 ATPGRLLDFIKG--GLTLKSITQVVLDEADRMLDMGFEDQIRDVLKEVRKDRQTLFFSAT 280
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+P+ V+ + ++ +QD P+FL G
Sbjct: 281 --------------------------WPQEVQRLANSLCSQD-----------PIFLQLG 303
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
E + + + +I K L+ + ++K +VF T +L L+ G
Sbjct: 304 ERGLSVNKNITQSVIIAGGN-KFEQLIEYFNQIKDKKVLVFCQKKIDTQKLEYRLSQHG- 361
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + G +Q+ R ++ FR GK+ L++++ +RG+DV V+ V+NYD P I+
Sbjct: 362 --VNARYLHGDLKQNQRDYIMQDFRNGKVNCLITTNLASRGLDVSDVDVVINYDFPENIE 419
Query: 373 TYIHRAGRTARAGQLGRCFTL---------LHKDEVKRFKKLLQK 408
YIHR GRT RAG+ G + L D +K FK+ Q+
Sbjct: 420 DYIHRIGRTGRAGKKGEALSFIQPRDLDYRLKDDLIKVFKQSSQE 464
>gi|34782983|gb|AAH12461.2| DDX51 protein, partial [Homo sapiens]
Length = 186
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 269 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
C KPL ++ L+ +G + + FT+S E++HRL L+ FG + + E+S
Sbjct: 6 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQ 63
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R LK F +GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G
Sbjct: 64 RRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTG 123
Query: 389 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
+ FTLL K + +RF ++L +A H + S L++ L P Y+
Sbjct: 124 QAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEA 169
>gi|358341811|dbj|GAA31574.2| ATP-dependent RNA helicase DDX47/RRP3 [Clonorchis sinensis]
Length = 464
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 189/400 (47%), Gaps = 70/400 (17%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75
+TI L +D+ + TGSGKT ++A+PI+Q L ++ ALV+ PTR+LALQ+K
Sbjct: 44 KTIPQALRGKDVVGLAETGSGKTAAFAIPILQDLISKPKHNF-ALVLTPTRELALQLKSQ 102
Query: 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135
F + GL V VG + D+ +L S I++ TP
Sbjct: 103 FMDLGEVYGLRVICLVGGQHVEDQTRDL--------------------KVSKYHIIIGTP 142
Query: 136 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
GR+ H+ ++ L H+ YLV+DE D++L + + E++ S L
Sbjct: 143 GRICYHLENSKDLRLNHIRYLVLDEADQMLEDTF---------------EDQLSAIIANL 187
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
P P + SATL+ KL ++ P+ +
Sbjct: 188 P-----------------------PNHRTYLYSATLSPKVQKLQEICTRSPIIVEVSLEY 224
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGE---EKCIVFTSSVESTHRLCTLLNHFGE 312
K+ + ++ I E + + +YLV L+++ + + IVFT++ + R+ +LLN +
Sbjct: 225 SKVKKLDHAFVFIPEQE-RDVYLVYALKTISKVTNSRTIVFTTTWRESFRIASLLNSLSQ 283
Query: 313 LRI-KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KP 368
L K +G +Q R +L +FR G+ LV++D +RG+D+ V+ ++NYD +P
Sbjct: 284 LLGGKAVPLNGAMQQDKRQNSLFSFRAGQAAFLVATDLASRGLDIPDVDLIINYDVPRRP 343
Query: 369 AY---IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++ K YIHR GRTARAG+ GR TL+ R K +
Sbjct: 344 SWSDSAKAYIHRVGRTARAGRSGRAITLVTPYSATRLKAI 383
>gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
Length = 443
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 181/403 (44%), Gaps = 66/403 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + Q+ I + +DL +S TGSGKTL++ LP++ ++L ++ RA+++
Sbjct: 21 FKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILA 80
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV ++ + L +G + D++ L + PK
Sbjct: 81 PTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPKF-------------- 126
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+VATPGRL DH+ R L+ L L++DE DR+L
Sbjct: 127 -------IVATPGRLADHLE-HRSLYLDGLETLILDEADRMLDLG--------------- 163
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLD 242
F P L+ I + R R ++ SATL D N++A
Sbjct: 164 ----------FAPE----LRRIHKAAKHR--------RRQTLMFSATLDHADVNEIAAEM 201
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L+ P + G + + + + + L K L +L + I+FT++ + T R
Sbjct: 202 LNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIFTATRDDTER 261
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LN E ++K SG Q+ R+ + F ++LV++D +RG+D+ V +V
Sbjct: 262 LTEKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHV 318
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+N+D P + + Y+HR GRT RAG G +L+ + FK++
Sbjct: 319 INFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 361
>gi|444357741|ref|ZP_21159253.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443605729|gb|ELT73559.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 403
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 124/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYAEHRGAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G SI P+++A
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI---------NPQIDA--- 122
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 123 ---------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRMLD-------- 164
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K P+ ++ SAT + +
Sbjct: 165 ------------------------MGFIHDIKRVLA------KLPPQRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPQEVIAGFEP 379
>gi|336367410|gb|EGN95755.1| hypothetical protein SERLA73DRAFT_186962 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380126|gb|EGO21280.1| hypothetical protein SERLADRAFT_476265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 779
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 179/411 (43%), Gaps = 74/411 (18%)
Query: 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALV 61
S F + ++I L RD+ + TGSGKTL++ +P ++ L + L AL+
Sbjct: 52 SFFVEMTDIQAQSIPVALKGRDVLGAARTGSGKTLAFLIPTLEILYRKKWGPQDGLGALI 111
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA+Q+ +V +I S GL +G ++ DE L
Sbjct: 112 ISPTRELAVQIFEVLRSIGGNHSFSAGLVIGGKNLKDERDRL------------------ 153
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
S ++ILVATPGRL+ H++ T GF ++L LV+DE DR+L + L +L
Sbjct: 154 ----SRMNILVATPGRLLQHMDQTFGFESDNLQVLVLDEADRILDMGFSRTLSALL---- 205
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
+ LP + +L + SAT T LA+L
Sbjct: 206 -----------SHLPKSRQTL-----------------------LFSATQTDSVKDLARL 231
Query: 242 DLHHPLFLTTGETRYK--LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L P + ET + P+ LE + ++CE K L + ++S + K +VF SS +
Sbjct: 232 SLKDPASIGVQETNNESATPKSLEQHYIVCELDKKLDILWSFIKSHLKAKILVFISSGKQ 291
Query: 300 T----HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
C + H G + + G Q+Q+ R T F +L ++D RG+D
Sbjct: 292 VRFVFETFCKM--HPG---VPLLHLHGKQKQTTRLATYTRFTSSSHAILFATDIAARGLD 346
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406
V+ V+ D P TYIHR GRTAR G+ L E + K L
Sbjct: 347 FPSVDWVLQVDAPEDADTYIHRVGRTARYESAGKGLLFLLPSEEEGMKSAL 397
>gi|323493979|ref|ZP_08099095.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311606|gb|EGA64754.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 412
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 191/410 (46%), Gaps = 78/410 (19%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81
L ++D+ + TGSGKTL+Y LP+V+ L +A +A+V++PTR+LA+QV V +A
Sbjct: 35 LADKDVLALANTGSGKTLAYTLPLVEKL--KANSEQQAVVLVPTRELAMQVSQVINQLAS 92
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
+GLS G G+ D + Q L+ ILVAT GRL+D
Sbjct: 93 PLGLSAVCLCG-------------------GV--DKAEQQQALEQQPQILVATTGRLIDL 131
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD--ASTFLPSAF 199
IN G +L + YLV+DE DRLL + W P V + + + R + ++TF
Sbjct: 132 IN--DGLSLSKVAYLVLDEADRLLDMGF--W-PDVQTIAENTAQKRQTAMFSATFSEQLK 186
Query: 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 259
T+ R +E LSA NK D+ L+L ++ K
Sbjct: 187 QQAGTLMRSAIE---------------LSAHQNNSTNK----DIAERLYLVNKGSKTK-- 225
Query: 260 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 319
L+ L++ ++ +VF + E+ L LN G I +
Sbjct: 226 -----------------ALIELIKQHQWKQVLVFIGAKENADGLNKKLNKAG---IASQA 265
Query: 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 379
G + Q+ R + L F+ G+ QVL+++D + RG+ +E + V+N++ P + +TY+HR G
Sbjct: 266 LHGNKDQTEREQILAQFKSGQSQVLIATDLLARGVHIEQLPAVINFELPMHAETYVHRVG 325
Query: 380 RTARAGQLGRCFTLLHKDEVKRFKKL-------LQKADNDSCPIHSIPSS 422
RTARAG+ G +L+ E + + L AD + P+ PS+
Sbjct: 326 RTARAGEQGIALSLVCHGETEALNAIRVLTQRELPLADLEGFPVTDKPST 375
>gi|334322494|ref|XP_003340257.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 isoform 2
[Monodelphis domestica]
Length = 608
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 189/429 (44%), Gaps = 71/429 (16%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G + P+Q+ + I L R+L ++PTGSGKTL++++PI+ L + RAL+
Sbjct: 192 GFQNPTPIQM----QAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALI 247
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA Q ++ G + + + ++++A + + P+
Sbjct: 248 ISPTRELASQTHRELVRLSEGTGFRIHM-IHKAAVAAK--------------KFGPKS-- 290
Query: 122 QELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
DILV TP RL+ + G L+++ +LVVDE+D+L
Sbjct: 291 ---SKKFDILVTTPNRLIYLLKQDPPGIDLKNVEWLVVDESDKLF--------------- 332
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
D + F D F+ A S K +RR + SAT D + +
Sbjct: 333 -EDGKTGFRDQLAFIFLACTSHK-VRRA-----------------MFSATFAHDVEQWCK 373
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVES 299
L+L + ++ G R E +E L S+ K L + L++ +VF S+E
Sbjct: 374 LNLDSVISVSIG-ARNSAAETVEQELLFVGSETGKLLAIRDLIKKGFHPPVLVFVQSIER 432
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L L + G I + + Q R T+ +FR GKI VL+ + + RG+D +GV
Sbjct: 433 AKELFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 489
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI--- 416
N V+NYD P YIHR GRT RAG G+ T +D+ + + CP+
Sbjct: 490 NLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEY 549
Query: 417 ----HSIPS 421
H +PS
Sbjct: 550 IRSFHKLPS 558
>gi|417859722|ref|ZP_12504778.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
gi|338822786|gb|EGP56754.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
Length = 501
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 188/412 (45%), Gaps = 88/412 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L+V L +G G+ ++ +D
Sbjct: 77 LILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVSFEDQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERIAKMIPFTRQT-LFFSATMPPEIQKL 195
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GEE---- 288
A L +P TR ++ + + K + + + K A+L+ L EE
Sbjct: 196 ADRFLQNP-------TRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAEEAELK 248
Query: 289 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
I+F + + L L+ G + G Q R+ L+ FR+G + +LV+SD
Sbjct: 249 NAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGNLTLLVASD 305
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 306 VAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 357
>gi|223590193|sp|A5DLE0.2|DBP8_PICGU RecName: Full=ATP-dependent RNA helicase DBP8
gi|190347673|gb|EDK39993.2| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
6260]
Length = 433
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 179/398 (44%), Gaps = 65/398 (16%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
++ E I L RD + TGSGKT+++A P++ S + LV+ PTR+LALQ
Sbjct: 26 SIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPF-GIYGLVLTPTRELALQ 84
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
+ + F A+ ++ + V + VG + + E+ K P +
Sbjct: 85 IAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHF---------------------I 123
Query: 132 VATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
+ATPGRL DHI + T L+ + +LV+DE DRLL ++ + L ++
Sbjct: 124 IATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKI--------L 175
Query: 189 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 248
DAS F + T R KDKP P K P+F
Sbjct: 176 PDASKRQTLLFTATVT----DAVRALKDKPVPEGKK---------------------PVF 210
Query: 249 L--TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC--IVFTSSVESTHRLC 304
+ + + +P L + S +K YL +L S EK IVF V T+
Sbjct: 211 IHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVSPKYEKASAIVF---VNRTYTAE 267
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L +L I++ QS R+ +L FR G +VL+++D +RG+D+ V VVN
Sbjct: 268 ILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVELVVN 327
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
D PA YIHR GRTARAG+ G +++ + +V+R
Sbjct: 328 QDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERI 365
>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 429
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 181/412 (43%), Gaps = 76/412 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G + P+Q + I P L RDL + TG+GKT ++ LP++Q L LR L+
Sbjct: 20 GYTEPTPIQA----QAIPPALQGRDLIGLAQTGTGKTTAFVLPMLQRLLRGPRGKLRGLI 75
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
V PTR+LA Q+ D ++ GL G G+ +P+
Sbjct: 76 VSPTRELAEQIYDSVKTLSQHTGLRAMAIYG-------------------GVGMEPQKA- 115
Query: 122 QELQSAVDILVATPGRLMDHI-NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+L++ DI++A PGRL+DH+ T F + + LV+DE DR+
Sbjct: 116 -KLRAGTDIVIACPGRLLDHVWQGTIDF--DDVEMLVIDEADRMFDMG------------ 160
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
FLP ++ I RC V P ++ SAT+ D KL Q
Sbjct: 161 -------------FLPD----IRKILRCLVR--------PERQTLLFSATMPADVRKLVQ 195
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCI-VFTSSVE 298
L P+ + G P ++ L LK L +L+ + + + VFT +
Sbjct: 196 EFLTDPVTVQIGTV---APAVTVTHALYPVRQDLKTALLKQILRQIEDAGSVLVFTRTKH 252
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
T R+ L G + G Q R L F++G +VLV++D +RG+DV
Sbjct: 253 RTERVAIALRQAG---YAVASIQGNLSQYRRQAALDGFKDGTFKVLVATDIASRGIDVSD 309
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQ 407
V++V+NYD P YIHR GRT R G+ G FT + ++ V+ +KLL+
Sbjct: 310 VSHVINYDMPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESMVRALEKLLK 361
>gi|115397383|ref|XP_001214283.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192474|gb|EAU34174.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 853
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 144/292 (49%), Gaps = 61/292 (20%)
Query: 2 GISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G F VQ AV + GP DLCI++ TGSGKTLSY LP+V L +R L
Sbjct: 259 GYKEAFAVQSAVIPLLLKGPRNHPGDLCISAATGSGKTLSYVLPLVTALEQAPAPRMRGL 318
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-- 118
+V+PTR+L Q ++ A GL V AVG +I DE L++ ++ Y PE
Sbjct: 319 IVVPTRELVKQAREACELCAAGSGLRVASAVGNVAIKDEQRSLMRVDQV-----YGPEIS 373
Query: 119 -----------------------DV----------LQELQSAVDILVATPGRLMDHINAT 145
DV + + + VDIL+ TPGRL+DHI T
Sbjct: 374 RQRQHTKMTDQDWTNFNLQEYVADVADRGDCLPGYVHKAEPNVDILICTPGRLVDHIRYT 433
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL--TRSDNENRFSDASTFLPSAFGSLK 203
+GFTL+HL +LV+DE DRLL E++Q W+ V+ +R D++ AFGS
Sbjct: 434 KGFTLKHLEWLVIDEADRLLNESFQEWVDVVMTSLDSRKDSD------------AFGSSG 481
Query: 204 TI-RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254
I G+ K+ PR K++LSAT+T+D KL L L +P + G +
Sbjct: 482 QIMADLGLPIQTKE---PR--KVILSATMTRDVTKLNSLRLLNPKLVLVGSS 528
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
+ S KTL A+R GKI +++++D +RG+D+ +N+VVNYD P + TY+HR GRTAR
Sbjct: 716 NKSSASRKTLTAYRRGKISIIIATDRASRGLDLPSLNHVVNYDVPPSVTTYVHRVGRTAR 775
Query: 384 AGQLGRCFTLLHKDEVKRFKK 404
AG+ G +TL+ E + F K
Sbjct: 776 AGREGSAWTLVAHREGRWFVK 796
>gi|334322496|ref|XP_001371632.2| PREDICTED: probable ATP-dependent RNA helicase DDX52 isoform 1
[Monodelphis domestica]
Length = 604
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 189/429 (44%), Gaps = 71/429 (16%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G + P+Q+ + I L R+L ++PTGSGKTL++++PI+ L + RAL+
Sbjct: 188 GFQNPTPIQM----QAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALI 243
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA Q ++ G + + + ++++A + + P+
Sbjct: 244 ISPTRELASQTHRELVRLSEGTGFRIHM-IHKAAVAAK--------------KFGPKS-- 286
Query: 122 QELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
DILV TP RL+ + G L+++ +LVVDE+D+L
Sbjct: 287 ---SKKFDILVTTPNRLIYLLKQDPPGIDLKNVEWLVVDESDKLF--------------- 328
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
D + F D F+ A S K +RR + SAT D + +
Sbjct: 329 -EDGKTGFRDQLAFIFLACTSHK-VRRA-----------------MFSATFAHDVEQWCK 369
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVES 299
L+L + ++ G R E +E L S+ K L + L++ +VF S+E
Sbjct: 370 LNLDSVISVSIG-ARNSAAETVEQELLFVGSETGKLLAIRDLIKKGFHPPVLVFVQSIER 428
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L L + G I + + Q R T+ +FR GKI VL+ + + RG+D +GV
Sbjct: 429 AKELFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 485
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI--- 416
N V+NYD P YIHR GRT RAG G+ T +D+ + + CP+
Sbjct: 486 NLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEY 545
Query: 417 ----HSIPS 421
H +PS
Sbjct: 546 IRSFHKLPS 554
>gi|295670994|ref|XP_002796044.1| DEAD-box ATP-dependent RNA helicase [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284177|gb|EEH39743.1| DEAD-box ATP-dependent RNA helicase [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 319
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 128/265 (48%), Gaps = 41/265 (15%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 14 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKV---------- 63
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
LP RR + SAT++ L + L +PL +
Sbjct: 64 -----LPRE-------RRT----------------YLFSATMSSKVESLQRASLSNPLRV 95
Query: 250 TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 309
+ ++Y+ L L K K +YLV LL + I+FT +V T RL LL
Sbjct: 96 SISSSKYQTVSALLQTFLFIPHKYKDIYLVYLLNEFAGQSAIIFTRTVNETQRLAILLRA 155
Query: 310 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 369
G I + G QS R L FR +LV++D RG+D+ V+ V+N+D P
Sbjct: 156 LGFGAIPLH---GQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPP 212
Query: 370 YIKTYIHRAGRTARAGQLGRCFTLL 394
KTYIHR GRTARAG+ G F+ +
Sbjct: 213 DSKTYIHRVGRTARAGKSGHAFSFV 237
>gi|444372413|ref|ZP_21171888.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
gi|443593626|gb|ELT62346.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
Length = 416
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 124/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYAEHRGAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G SI P+++A
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI---------NPQIDA--- 122
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 123 ---------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRMLD-------- 164
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K P+ ++ SAT + +
Sbjct: 165 ------------------------MGFIHDIKRVLA------KLPPQRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPQEVIAGFEP 379
>gi|388599353|ref|ZP_10157749.1| ATP-dependent RNA helicase [Vibrio campbellii DS40M4]
Length = 447
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 181/403 (44%), Gaps = 66/403 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + Q+ I + +DL +S TGSGKTL++ LP++ ++L ++ RA+++
Sbjct: 25 FKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILA 84
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV ++ + L +G + D++ L + PK
Sbjct: 85 PTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKALRRYPKF-------------- 130
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+VATPGRL DH+ R L+ L LV+DE DR+L
Sbjct: 131 -------IVATPGRLADHLEH-RSLFLDGLETLVLDEADRMLDLG--------------- 167
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLD 242
F P L+ I R R R ++ SATL + N +A
Sbjct: 168 ----------FAPE----LRRIHRAAKHR--------RRQTLMFSATLDHAEVNDIASEM 205
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L+ P + G + + + + + L K L +L+ + I+FT++ + T R
Sbjct: 206 LNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAEYRQVIIFTATRDDTER 265
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LN E ++K SG Q+ R+ + F ++LV++D +RG+D+ V +V
Sbjct: 266 LTNKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHV 322
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+N+D P + + Y+HR GRT RAG G +L+ + FK++
Sbjct: 323 INFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRV 365
>gi|15226155|ref|NP_180929.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana]
gi|75319077|sp|P93008.1|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21
gi|1707017|gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
[Arabidopsis thaliana]
gi|17473908|gb|AAL38370.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
[Arabidopsis thaliana]
gi|20259792|gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
[Arabidopsis thaliana]
gi|330253781|gb|AEC08875.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana]
Length = 733
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/407 (28%), Positives = 184/407 (45%), Gaps = 60/407 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 332 GYKKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENET 387
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q+++ A +G V VG SI E G+
Sbjct: 388 EGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE------------EQGL- 434
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
++ +I++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 435 --------KITQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVA 485
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL S N K I R + SAT+
Sbjct: 486 GVLDAMPSSN------LKPENEEEELDEKKIYRT---------------TYMFSATMPPG 524
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL LGE+ IVF
Sbjct: 525 VERLARKYLRNPVVVTIG-TAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFV 583
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D + RG+
Sbjct: 584 NTKKNCDSIAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGI 640
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEV 399
D+ V +V+NYD P +I+ Y HR GRT RAG+ G F LH EV
Sbjct: 641 DIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV 687
>gi|358347102|ref|XP_003637601.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503536|gb|AES84739.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 781
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 123/442 (27%), Positives = 201/442 (45%), Gaps = 61/442 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ ++
Sbjct: 305 GYKTPSPIQMAA----IPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEA 360
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q++D A +G+ V VG SI E G
Sbjct: 361 EGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIE------------EQGF- 407
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+++ +I++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 408 --------KIRQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVM 458
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL DA +PS+ ++ + +K R M SAT+
Sbjct: 459 GVL------------DA---MPSS-----NLKPENEDEELDEKRIYRTTYM-FSATMPPA 497
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL L ++ IVF
Sbjct: 498 VERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKESEKNYKLQRLLDELNDKTAIVFV 556
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ +S L L+ G ++ G + Q R +L+ FR + VLV++D RG+
Sbjct: 557 NTKKSADFLAKNLDKEG---YRVTTLHGGKSQDQREISLEGFRTKRYNVLVATDVAGRGI 613
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F +L Q +
Sbjct: 614 DIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYELKQMLIQSNS 673
Query: 415 PIHSIPSSLIESLRPVYKSGDV 436
P +P L +K G +
Sbjct: 674 P---VPPELARHEASKFKPGSI 692
>gi|325001026|ref|ZP_08122138.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
Length = 416
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 181/410 (44%), Gaps = 72/410 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--A 59
G ++ FPVQ A +T L RDL TGSGKTL++ L ++ ++ R
Sbjct: 23 GFTAPFPVQAATLPDT----LAGRDLLGRGQTGSGKTLAFGLALLARIAGDRARSTAPLG 78
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV++PTR+LA QV DV +A AV L V VG S+ +++EL
Sbjct: 79 LVLVPTRELAGQVVDVLTPLAAAVNLRVTAVVGGLSMNKQVAEL---------------- 122
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+ +D+LVATPGRL DH+ L + +DE DR+ A +LP V
Sbjct: 123 -----RRGIDLLVATPGRLTDHLQQGT-CDLSEVTITALDEADRM---ADMGFLPQV--- 170
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
RG D+ +++ SATL + + L
Sbjct: 171 --------------------------------RGILDRTPSDGQRLLFSATLDGEVDTLV 198
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+ L P+ + + + +E + L+ + + + E + I+F +
Sbjct: 199 RRHLTDPVTRSVAPPTASV-DTMEHHVLVVGKDDRSRVIAEIAAR--EGRTIMFVRTKHG 255
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
R+ +L G + G + Q+ R++ L FR G++ VL+++D RG+ ++ V
Sbjct: 256 ADRMVRVLRRQG---VAAGPLHGGRSQNQRNRALDEFRTGEVPVLIATDVAARGIHIDDV 312
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
VV+ D PA K Y+HRAGRTARAG+ G TL ++ L ++A
Sbjct: 313 GLVVHVDPPADPKAYLHRAGRTARAGEEGVVVTLSAPEQRAEVDLLTKQA 362
>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|421868477|ref|ZP_16300125.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|358071499|emb|CCE51003.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
Length = 477
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 187/435 (42%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYAEHRGAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G G+
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFG-------------------GVS 115
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+P+ + L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 116 INPQ--IDALKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRMLD-------- 164
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K P+ ++ SAT + +
Sbjct: 165 ------------------------MGFIHDIKRVLA------KLPPQRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPQEVIAGFEP 379
>gi|356520440|ref|XP_003528870.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Glycine
max]
Length = 810
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 200/455 (43%), Gaps = 79/455 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---- 56
+G P+Q A G +D+ + TGSGKTL++ LPI+Q L +
Sbjct: 193 LGFKEPTPIQKACIPAAAHQG---KDVVGAAETGSGKTLAFGLPILQRLLEEREKAGNMV 249
Query: 57 ---------------LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 101
LRAL++ PTR+LALQV D A+A + + V VG
Sbjct: 250 GERGEEPEKYASTGLLRALIIAPTRELALQVTDHLKAVAKHINVRVTPIVG--------- 300
Query: 102 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE--HLCYLVVD 159
GI + ++ L L++ +I+V TPGRL + ++A +E L + V+D
Sbjct: 301 ----------GILAEKQERL--LKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLD 348
Query: 160 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS------------------TFLPSAFGS 201
E DR+++ + L +++ + N N D S T + SA +
Sbjct: 349 EADRMVQNGHFKELQSIIDMLPMSN-NSAEDNSQHVQSCVTVSSYQRKKRQTLVFSATVA 407
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP---NKLAQLDLHHPLFLTTGETRYKL 258
L + R ++RG + + TL++ + A +DL +P L T
Sbjct: 408 LSSDFRKKLKRGSIKQKQSLTDGLNSIETLSERAGMRSNAAIIDLTNPSILAT------- 460
Query: 259 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 318
+LE + C + K YL +L G+ + IVF +S+ + + ++L G I +
Sbjct: 461 --KLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILG---INVW 515
Query: 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 378
+Q R K + FRE + +LV++D RG+D+ GV VV+Y P + Y+HR+
Sbjct: 516 TLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRS 575
Query: 379 GRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 413
GRTARA G L+ + +F L + D+
Sbjct: 576 GRTARASAEGCSIALISSRDTSKFASLCKSFSKDN 610
>gi|169773163|ref|XP_001821050.1| ATP-dependent RNA helicase dbp4 [Aspergillus oryzae RIB40]
gi|238491114|ref|XP_002376794.1| DEAD box RNA helicase (Hca4), putative [Aspergillus flavus
NRRL3357]
gi|91206545|sp|Q2UHB7.1|DBP4_ASPOR RecName: Full=ATP-dependent RNA helicase dbp4
gi|83768911|dbj|BAE59048.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697207|gb|EED53548.1| DEAD box RNA helicase (Hca4), putative [Aspergillus flavus
NRRL3357]
Length = 796
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 182/421 (43%), Gaps = 70/421 (16%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRAL 60
SS F + IG L RD+ + TGSGKTL++ +P+++ L + L AL
Sbjct: 62 SSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGAL 121
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 122 ILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKEE--------------------- 160
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++ILV TPGR++ H++ T F + +L LV+DE DR+L +Q + ++
Sbjct: 161 -QERLGRMNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIV--- 216
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
G L R+ ++ SAT T+ + LA+
Sbjct: 217 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 241
Query: 241 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L L P ++ ET P L+ + ++ K L + ++S + K IVF SS +
Sbjct: 242 LSLQDPEYVAVHETASSATPSTLQQHYVVTPLSQKLDVLWSFIRSNLKAKTIVFLSSGKQ 301
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+ H + I + G Q+Q R F + K VL S+D RG+D V
Sbjct: 302 VRFVYESFRHL-QPGIPLMHLHGRQKQGGRLDITAKFSQAKHAVLFSTDITARGLDFPAV 360
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHS 418
+ V+ D P TYIHR GRTAR + GR L +E K+L QK PI
Sbjct: 361 DWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEESGMLKRLEQK----KVPIER 416
Query: 419 I 419
I
Sbjct: 417 I 417
>gi|440295520|gb|ELP88433.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 672
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/424 (25%), Positives = 184/424 (43%), Gaps = 72/424 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + ++ I + D+ + TGSGKT +Y +PI++ L + +R++V+ PTR
Sbjct: 32 FKVPTPIQRKAIPAIMTGVDVIAMARTGSGKTAAYLVPIIEKLGFHSEDGVRSIVICPTR 91
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LALQ VF + L L +G S + ++ L K P
Sbjct: 92 ELALQTVKVFNELTFKTNLRASLIIGGSKLYEQFENLEKNP------------------- 132
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
DI+VATPGRL I + +L+ + + DE D + + + + +++L +
Sbjct: 133 --DIIVATPGRLT-FILESANISLQRVDIVCFDEADMMFEQGFSEQISDIVRLLPLSRQ- 188
Query: 187 RFSDASTFLPSAFGSL--KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
F S +P + G KT++R P ++++ L+ D L + H
Sbjct: 189 -FLLFSATIPQSLGVFLKKTLKR------------PEIIRLDTEDKLSPD---LENIFYH 232
Query: 245 HPLFLTTGETRYKLPERL---ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301
G + L E++ E + C ++ + YL ALL+ I+F
Sbjct: 233 VKEVEKDGHLLWLLLEKIPKEEQTVIFCATRHEVEYLGALLKQYKVNSSILF-------- 284
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
G Q R LK FR + +++ +D RG+D+ ++N
Sbjct: 285 --------------------GKADQQDREINLKKFRNDENKIMFVTDVAARGVDIPNLDN 324
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
V+NYD P+ K YIHR GR ARAG++G C+ + +E+ K L A + PI ++P
Sbjct: 325 VINYDFPSSAKLYIHRCGRVARAGRIGTCYNFVQTEEMGYLKDLEVFAMDKEVPIGNVPR 384
Query: 422 SLIE 425
++
Sbjct: 385 EYVD 388
>gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227]
gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
Length = 454
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 186/406 (45%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ L +
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLQN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum So ce56]
gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum So ce56]
Length = 812
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 177/395 (44%), Gaps = 75/395 (18%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
PVQ+AVW+ P RD + + TG+GKT ++ LPIV R++ + L + PTR+
Sbjct: 53 PVQLAVWE----PVTRGRDAVVQARTGTGKTAAFGLPIVDHAVKRSLAQAQVLALCPTRE 108
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LALQV + G+ V G + + +I L +
Sbjct: 109 LALQVSAEVERLGKRKGIKVVAVYGGAPMQRQIDALA---------------------AG 147
Query: 128 VDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
++V TPGR++DH+ RG +H+ LV+DE D +L ++ L +L
Sbjct: 148 AQVIVGTPGRVLDHLR--RGTIVAKHIRLLVLDECDEMLSMGFERELTAIL--------- 196
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
LP P ++ SATL D ++A+ L P
Sbjct: 197 ------AELP-----------------------PERQTLLFSATLPPDIERIARSKLRSP 227
Query: 247 LFLT-TGETRYKLPERLESY-KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 304
F+T +G+ L +++ Y LI KL LV +++ E ++F ++ + T +
Sbjct: 228 EFITLSGDAVGAL--QIQHYVYLITGDKL--TSLVRIIEVENPENAVIFCNTKDETEAVA 283
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L G +G QS R K + A REG+++ LV++D RG+D+ + +V+N
Sbjct: 284 GALKRQG---YDADWLNGDLPQSDREKVMSATREGRLRFLVATDVAARGIDISHLTHVIN 340
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
YD P + Y+HR GRT RAG+ G L+ +V
Sbjct: 341 YDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDV 375
>gi|268565311|ref|XP_002639404.1| Hypothetical protein CBG03992 [Caenorhabditis briggsae]
Length = 750
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 190/422 (45%), Gaps = 80/422 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRALVVLPTRDLA 69
+ ++TI L D+ + TGSGKTL+ +PI++ L L ALV+ PTR+LA
Sbjct: 102 IQRDTIAHSLTGADVVGAAKTGSGKTLALVIPILEALWRVKWSPEYGLGALVISPTRELA 161
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 129
LQ A+ G S GL +G S +A E + + S ++
Sbjct: 162 LQTFSTINAVGKHHGFSCGLVIGGSEVAFERNRI----------------------SGIN 199
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I+V TPGRL+ H++ + L LV+DE DR+L + L +++
Sbjct: 200 IIVCTPGRLLQHMDENEQMNCDSLQILVLDEADRMLDMGFSKQLNSII------------ 247
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
LP+ +L + SAT T++ L+++ + P+F+
Sbjct: 248 ---NNLPAERQTL-----------------------LFSATQTRNVKDLSRVCTNDPVFV 281
Query: 250 TTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
+ E + P+ L+ ++ E ++K L + +++ ++K +VF SS + L +
Sbjct: 282 SVHENSAAATPDNLKQSYVVVEEEIKINTLWSFIEAHKKKKSLVFVSSCKQARFLTEV-- 339
Query: 309 HFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
F +LR + + G Q R +T + E K VL+++D +RG+D E ++ V+ D
Sbjct: 340 -FSQLRPGLPVMGLWGTMNQKKRIETFTKYDESKAAVLIATDVASRGLDFERIDWVIQVD 398
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 426
PA I YIHR GR+AR + G ++ + + L K HSIP IE
Sbjct: 399 CPAQIDDYIHRVGRSARMEESGNSLLMVTSSQEEAMISKLAK--------HSIP---IEE 447
Query: 427 LR 428
L+
Sbjct: 448 LK 449
>gi|391865882|gb|EIT75161.1| RNA Helicase [Aspergillus oryzae 3.042]
Length = 796
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 182/421 (43%), Gaps = 70/421 (16%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRAL 60
SS F + IG L RD+ + TGSGKTL++ +P+++ L + L AL
Sbjct: 62 SSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGAL 121
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 122 ILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKEE--------------------- 160
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++ILV TPGR++ H++ T F + +L LV+DE DR+L +Q + ++
Sbjct: 161 -QERLGRMNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIV--- 216
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
G L R+ ++ SAT T+ + LA+
Sbjct: 217 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 241
Query: 241 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L L P ++ ET P L+ + ++ K L + ++S + K IVF SS +
Sbjct: 242 LSLQDPEYVAVHETASSATPSTLQQHYVVTPLSQKLDVLWSFIRSNLKAKTIVFLSSGKQ 301
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+ H + I + G Q+Q R F + K VL S+D RG+D V
Sbjct: 302 VRFVYESFRHL-QPGIPLMHLHGRQKQGGRLDITAKFSQAKHAVLFSTDITARGLDFPAV 360
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHS 418
+ V+ D P TYIHR GRTAR + GR L +E K+L QK PI
Sbjct: 361 DWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEESGMLKRLEQK----KVPIER 416
Query: 419 I 419
I
Sbjct: 417 I 417
>gi|422909459|ref|ZP_16944107.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|424658842|ref|ZP_18096093.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
gi|341635148|gb|EGS59872.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|408053917|gb|EKG88915.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
Length = 448
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 179/409 (43%), Gaps = 69/409 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + Q+ I + RDL +S TGSGKTL++ LP++ ++L +A R L+++
Sbjct: 21 FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLKTKAFSAKDPRGLILV 80
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV ++ + + L G + D+++ L + P+
Sbjct: 81 PTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVNALARGPRF-------------- 126
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+VATPGRL DH+ R LE L LV+DE DR+L
Sbjct: 127 -------IVATPGRLADHLE-HRSLFLEGLETLVLDEADRML------------------ 160
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLD 242
G K +RR + R ++ SATL D N +A
Sbjct: 161 --------------DLGFAKELRRI-----HSAAKHRRRQTLMFSATLDHADVNDMAMEL 201
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L+ P + G + + + + L K L +L + IVFT++ T R
Sbjct: 202 LNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADADYRQVIVFTATRADTDR 261
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LN + +K SG Q+ R+ + F ++LV++D +RG+D+ V +V
Sbjct: 262 LTEKLN---QSNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHV 318
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK---DEVKRFKKLLQK 408
+N+D P + + Y+HR GRT RAG G +L+ D KR + LQ+
Sbjct: 319 INFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFLQQ 367
>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 419
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 172/386 (44%), Gaps = 71/386 (18%)
Query: 20 PGLFE-RDLCINSPTGSGKTLSYALPIVQTL----SNRAVRC--LRALVVLPTRDLALQV 72
P + E +D+ + TG+GKT ++ LPI+Q L + R ++ +RALV++PTR+LA QV
Sbjct: 35 PHVLEGKDVLAGAQTGTGKTAAFGLPILQKLIDSDTKRDIQSNDVRALVLVPTRELAQQV 94
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
D A + V G +S+ + + L DIL+
Sbjct: 95 FDNLTQYAAQTKIKVVAVYGGTSMNVQT---------------------RNLDQGCDILI 133
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ + L YLV+DE DR+L + + +LQ
Sbjct: 134 ATPGRLIDHMYC-KNINLHKTEYLVLDEADRMLDMGFMPDIKRILQ-------------- 178
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
RC +R + SAT + +A L P+ +
Sbjct: 179 --------------RCNDDRQ----------TLFFSATFDKRIKTIAYRMLEEPVEVQVS 214
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+ E ++ + K K L L+ S ++ +VFT + + + L L G
Sbjct: 215 PSN-STAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVLVFTKTKQGSDALAKELKLDG- 272
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
IK +G + Q R K L F+ G+++ L+++D RG+D++ + VVN+D P +
Sbjct: 273 --IKAASINGDKSQGARQKALDDFKSGQVRALIATDVAARGLDIQQLEQVVNFDMPYKAE 330
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDE 398
Y+HR GRT RAG+ G +L+ +DE
Sbjct: 331 DYVHRIGRTGRAGKEGFAVSLMSRDE 356
>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
Length = 447
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 172/375 (45%), Gaps = 67/375 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD+ + TG+GKT ++ALPI+ L +RALV+ PTR+LA Q+ D F
Sbjct: 39 RDVMGLAQTGTGKTAAFALPILHRLQQGERGRVRALVIAPTRELAEQINDSF-------- 90
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
+ +G+ + ++ + G+ +P+ +Q+L++ +++VA PGRL+DHI A
Sbjct: 91 ----VTLGRQTRLRSVT-------VYGGVGVNPQ--VQKLKAGAEVVVACPGRLLDHI-A 136
Query: 145 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 204
L L LV+DE D++ G L
Sbjct: 137 QGTIDLSRLEVLVLDEADQMF--------------------------------DMGFLPD 164
Query: 205 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 264
IRR K P PR ++ SAT+ D LAQ L P+ + G P +
Sbjct: 165 IRRV-----LKHLP-PRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTV---APAVTVA 215
Query: 265 YKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
+ L E LK L+ LL+ E ++FT + RL L G + G
Sbjct: 216 HALYPVEQHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAG---YRAASLQGN 272
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q+ R L FR+G Q+LV++D RG+DV V++V+NYD P + YIHR GRT R
Sbjct: 273 LSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGR 332
Query: 384 AGQLGRCFTLLHKDE 398
A + G FTL+ D+
Sbjct: 333 AARSGDAFTLVTSDD 347
>gi|198437354|ref|XP_002125842.1| PREDICTED: similar to CG9143 CG9143-PA [Ciona intestinalis]
Length = 719
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 198/449 (44%), Gaps = 82/449 (18%)
Query: 24 ERDLCINSPTGSGKTLSYALPIVQTL---------------------------------- 49
+RD+ + TGSGKTL++ +P++ L
Sbjct: 201 KRDILGAAETGSGKTLAFGIPLLHHLMEDRERNLLENTENAEIDEDDEHMSDFEDAEPVS 260
Query: 50 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 104
+ + L ALV+ PTR+LA+QVK +A L + VG + +I L
Sbjct: 261 KEEIEETQPTKALPALVLTPTRELAIQVKKHLTQVAKHTKLWSTVVVGGMAQQKQIRLLN 320
Query: 105 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF--TLEHLCYLVVDETD 162
K P DI++ATPGRL + + + + T+ L YLV+DE D
Sbjct: 321 KEP---------------------DIVIATPGRLWELLESGHPYLSTIHKLRYLVIDEAD 359
Query: 163 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 222
R+L + L +L++ + TF+ SA +L T+ F +
Sbjct: 360 RMLEHGHFEELNKLLEVINLKKSK--TKRQTFIFSA--TLTTVHFTPNRPNFPTQASSNT 415
Query: 223 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 282
LS + ++ + + F+ T+ E+L K+IC+ K K YL +
Sbjct: 416 KDTKLSKLM-------KKIGVRNKPFVADLTTKKLTAEKLSEAKIICQPKEKDFYLYYFI 468
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFG--ELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+S + ++FT+S++ L +L+ G L I K +Q R K L F+E
Sbjct: 469 KS-HPGRTLIFTNSIDCIFHLSGVLDALGCNPLHIHAK-----MQQRQRLKHLDRFQENP 522
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
++++SD RG+D+ GV V++Y P ++TYIHR+GR+AR+G+ G + DE+
Sbjct: 523 NAIMIASDVAARGLDIPGVKYVIHYQVPRTMETYIHRSGRSARSGEDGLSLLFVSSDEMS 582
Query: 401 RFKKLLQKADN-DSCPIHSIPSSLIESLR 428
+K++ + D D P+ I S + ++R
Sbjct: 583 FYKRICRSLDKEDGLPLFLINDSYMAAIR 611
>gi|375149900|ref|YP_005012341.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361063946|gb|AEW02938.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 405
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 186/392 (47%), Gaps = 65/392 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCLRALVVLPTRDLALQ 71
V ++ I P L RD+ ++ TG+GKT ++ LP++ + L++R + ALV++PTR+LA+Q
Sbjct: 27 VQEQVIPPILAGRDIIASAQTGTGKTAAFLLPVINRLLTHRIDGQVGALVIVPTRELAIQ 86
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
+ ++ LS G + ++ ++E + LQ+ DI+
Sbjct: 87 IAQHLEGLSYFTNLSSIAVYGGNDGSNFVAEK------------------KALQTGTDIV 128
Query: 132 VATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 190
V TPGR++ H+N G+ + L +LV+DE DR+L + SD+ N+
Sbjct: 129 VCTPGRMIAHLNM--GYVQFKQLQFLVLDEADRMLDMGF------------SDDLNKI-- 172
Query: 191 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 250
G+L T R+ ++ SAT+ +LA+ L +P +
Sbjct: 173 --------LGTLPTQRQT----------------LMFSATMPDKIRQLARKILTNPAEIN 208
Query: 251 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 310
+ K PE++ + K L +L ++ + ++F S +S L+
Sbjct: 209 IAIS--KPPEKIVQKAFVVYEPQKLPLLKHILTNVPFKSALIFCSRKQSVK---LLVRDM 263
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
+ KI E QS R L F G+I +L ++D ++RG+D++ ++ V+NYD P
Sbjct: 264 ERAKFKIAEIHSDLEQSQRENVLNGFTSGRIPILCATDILSRGIDIDTIDLVINYDVPRD 323
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+ Y+HR GRTARA G FTL+ + E +F
Sbjct: 324 AEDYVHRIGRTARAEADGMAFTLVSEAEQNKF 355
>gi|375263823|ref|YP_005026053.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. EJY3]
gi|369844250|gb|AEX25078.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. EJY3]
Length = 447
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 180/403 (44%), Gaps = 66/403 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + Q+ I + +DL +S TGSGKTL++ LP++ ++L ++ RA+++
Sbjct: 25 FKKATEIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILA 84
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV ++ + L +G + D++ L + PK
Sbjct: 85 PTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPKF-------------- 130
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+VATPGRL DH+ R LE L L++DE DR+L
Sbjct: 131 -------IVATPGRLADHLE-HRSLYLEGLETLILDEADRMLDLG--------------- 167
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLD 242
F P L+ I R R ++ SATL + N +A
Sbjct: 168 ----------FAPE----LRRIHNAAKHR--------RRQTLMFSATLDHAEVNSIASEM 205
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L+ P ++ G + + + + + L K L +L + I+FT++ + T R
Sbjct: 206 LNAPKRISIGVSNEEHKDITQKFYLCDHLDHKEAILERVLAEAEYRQVIIFTATRDDTER 265
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LN E ++K SG Q+ R+ + F ++LV++D +RG+D+ V +V
Sbjct: 266 LTAKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHV 322
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+N+D P + + Y+HR GRT RAG G +L+ + FK++
Sbjct: 323 INFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 365
>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
Length = 499
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 186/410 (45%), Gaps = 82/410 (20%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G + P+Q I P L RD+ + TG+GKT S+ LP++ L RA R R+
Sbjct: 21 GYTEPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMISMLKRGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F A L+ L +G G+ + +D
Sbjct: 77 LVLAPTRELAAQVAENFDVYAKNTKLTKALLIG-------------------GVSFKEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 118 QL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER F P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IERIFGLTPFTRQT-LFFSATMAPEIERI 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC-- 290
L +P + TT +T + + + ES K L ++++ G+ KC
Sbjct: 196 TNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRESSEKRQLLRTMIENEGD-KCRN 254
Query: 291 -IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
I+F + + + +G + G QS R +TL AFR+G ++ LV+SD
Sbjct: 255 GIIFCNRKVDVDIVAKSMKKYG---LDASPIHGDLDQSKRMETLAAFRDGTLRFLVASDV 311
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDE 398
RG+D+ V++V NYD P++ + Y+HR GRT RAG+LG + + +DE
Sbjct: 312 AARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKLGTAMMICVPRDE 361
>gi|344228534|gb|EGV60420.1| dead Box protein Dhh1p [Candida tenuis ATCC 10573]
Length = 501
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 188/421 (44%), Gaps = 69/421 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E+I L RD+ + G+GKT S+ +P +Q + + V ++
Sbjct: 43 MGIFEAGFEKPSPIQEESIPIALTGRDILARAKNGTGKTASFVIPTLQMIKPK-VNKIQG 101
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + +G+ ++ G + + D+I L DP
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHLGIQCMVSTGGTPVKDDILRL-----------NDP-- 148
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL-VVDETDRLLREAYQAWLPTVLQ 178
V +LV TPGR++D A+R C L V+DE D++L ++ + +L+
Sbjct: 149 --------VHVLVGTPGRILDL--ASRNIADMSECSLFVMDEADKMLSREFKRTIERILE 198
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
L S+ ++ A+ +P VK + L NK
Sbjct: 199 LFPSNRQSLLFSAT--------------------------FPLAVKSFMEEHL----NKP 228
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+++L L L Y + E KL C L L L + I+F +
Sbjct: 229 YEINLMDELTLKGISQFYAFVD--EKQKLHC--------LNTLFSKLQINQSIIFCN--- 275
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
ST+R+ L EL Q R+K FR GK++ LV SD +TRG+D++
Sbjct: 276 STNRVELLAKKITELGYSCYYSHARMPQQARNKVFHEFRMGKVRNLVCSDLLTRGIDIQA 335
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418
VN V+N+D P +TY+HR GR+ R G LG LL D+ K+ Q+ + PI S
Sbjct: 336 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAVNLLSWDDRYNLYKIEQELGTEIKPIPS 395
Query: 419 I 419
+
Sbjct: 396 V 396
>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 486
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 124/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYAEHRGAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G SI P+++A
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI---------NPQIDA--- 122
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 123 ---------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRMLD-------- 164
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K P+ ++ SAT + +
Sbjct: 165 ------------------------MGFIHDIKRVLA------KLPPQRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPQEVIAGFEP 379
>gi|310816695|ref|YP_003964659.1| ATP-dependent RNA helicase RhlE [Ketogulonicigenium vulgare Y25]
gi|385234299|ref|YP_005795641.1| ATP-dependent RNA helicase [Ketogulonicigenium vulgare WSH-001]
gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
vulgare Y25]
gi|343463210|gb|AEM41645.1| ATP-dependent RNA helicase, putative [Ketogulonicigenium vulgare
WSH-001]
Length = 517
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 188/410 (45%), Gaps = 82/410 (20%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q E L RD+ + TG+GKT S+ LP++Q LS RA R R+
Sbjct: 21 GYTTPTPIQAGAIPE----ALAGRDVLGIAQTGTGKTASFTLPMIQLLSRGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F A L+ L +G G+ + +D
Sbjct: 77 LVLCPTRELAAQVAENFDMYAKYTKLTKALLIG-------------------GVSFKDQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 118 TL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER F+ P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IERIFQMTPFTRQT-LFFSATMAPEIERI 195
Query: 239 AQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
L P + T + + + +K + + +P A+L++L E + T+
Sbjct: 196 TNTFLSAPARIEVARAATTNQNITQAVVQFKGSSKER-EPSEKRAVLRALIEAESATLTN 254
Query: 296 SVESTHR------LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
++ +R + L +G + G QS R +TL FR+G ++ LV+SD
Sbjct: 255 AIIFCNRKIDVDIVAKSLKKYG---YNAEPIHGDLDQSQRMRTLDGFRDGSVKFLVASDV 311
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDE 398
RG+D+ V++V N+D P++ + Y+HR GRT RAG+ G F + + +DE
Sbjct: 312 AARGLDIPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRTGSTFMICVPRDE 361
>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
Length = 516
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 182/402 (45%), Gaps = 75/402 (18%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLP 64
+ V + I P L RD+C + TG+GKT S+ LP++ L RA R R L++ P
Sbjct: 14 YTVPTPIQAGAIPPALMRRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLIMEP 73
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
TR+LA QV + F L++ L +G G+ +D +D ++L
Sbjct: 74 TRELAAQVAENFEKYGKNHKLNIALLIG-------------------GVSFDEQD--RKL 112
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 113 ERGADVLICTPGRLLDHCERGK-LLMTGVEILVIDEADRMLDMG---------------- 155
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
F+P +ER K P+ R + SAT+ + KLA L
Sbjct: 156 ---------FIPD------------IERIAKLIPFTRQT-LFFSATMPPEIQKLADKFLQ 193
Query: 245 HPLFLTTG---ETRYKLPERLESYKLICESK--LKPLYLVALLQSLGE-EKCIVFTSSVE 298
+P + T + +RL + C++K K L ++++ + + I+F + +
Sbjct: 194 NPERIEVAPPSSTAKTVTQRL----VACQNKDYEKRSTLRDIIRAQDDLKNAIIFCNRKK 249
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
L L G + G Q R+ L F++ +I +LV+SD RG+D+
Sbjct: 250 DVADLFRSLERHG---FSVGALHGDMDQRSRTNMLAGFKDNQITLLVASDVAARGLDIPD 306
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
V++V N+D P + + Y+HR GRT RAG+ GR FTL+ K + K
Sbjct: 307 VSHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLVTKSDAK 348
>gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN]
gi|221229833|ref|YP_002503249.1| ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae]
gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
Length = 544
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 187/409 (45%), Gaps = 64/409 (15%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCL--- 57
GI F +Q + T+ L D+ + TG GKT ++ +P++Q +S R L
Sbjct: 51 GIQQPFAIQ----ELTLPLALAGDDVIGQARTGMGKTFAFGVPLLQRISVTTTARPLSGA 106
Query: 58 -RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
R LVV+PTR+L LQV D A +A + AD+ + + G Y+
Sbjct: 107 PRGLVVVPTRELCLQVADDLATVAKYL------------TADDDNRRFSVVSIYGGRAYE 154
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
P+ ++ LQ+ D++V+TPGRL+D L L LV+DE D +L + + +
Sbjct: 155 PQ--IEALQTGADVVVSTPGRLLDLCQQGH-LQLSGLSVLVLDEADEMLDLGFFPDIERL 211
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
L +D ++ A+ +P +L R F D+P + P+
Sbjct: 212 LGQIPTDRQSMLFSAT--MPDPIITLA--------RTFMDQPI---------HIRAEAPH 252
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
LA D TT + Y+ L+ +LI +LQ+ G ++FT +
Sbjct: 253 SLAVHD-------TTQQFVYRA-HALDKVELISR----------ILQARGRGATMIFTRT 294
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ ++ LN G + G Q R L+AFR G + VLV++D RG+D+
Sbjct: 295 KRTAQKVTNELNERG---FAVGAVHGDLGQIARENALEAFRTGNVDVLVATDVAARGIDI 351
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+ V +V+NY P K Y+HR GRT RAG+ G TL+ DE+ R++ +
Sbjct: 352 DDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELHRWETI 400
>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 486
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 124/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAV 54
+G +S P+Q +G G DL + TG+GKT + LPI+Q L A
Sbjct: 19 LGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTLPILQRLHTFYAEHRGAK 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
R +RAL++ PTR+LA QV++ A + + L + G SI P+++A
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI---------NPQIDA--- 122
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
L+ VDI+VATPGRL+DH+ + L L LV+DE DR+L
Sbjct: 123 ---------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILVLDEADRML--------- 163
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
G + I+R K P+ ++ SAT + +
Sbjct: 164 -----------------------DMGFIHDIKRVLA------KLPPQRQNLLFSATFSDE 194
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
LA L P + R E + + K L L++ + +VFT
Sbjct: 195 IKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +RL L G I G + QS R++ L F+ +QVLV++D RG+
Sbjct: 254 RTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGI 310
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D++ + +VVN+D P + Y+HR GRT RAG G +L+ DE K+LL+ D +
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE----KQLLR--DIERL 364
Query: 415 PIHSIPSSLIESLRP 429
IP +I P
Sbjct: 365 IKREIPQEVIAGFEP 379
>gi|260776996|ref|ZP_05885890.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
gi|260606662|gb|EEX32936.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
Length = 449
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 181/403 (44%), Gaps = 66/403 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + Q+ I + +DL +S TGSGKTL++ LP++ ++L N+A R +++
Sbjct: 27 FKQATEIQQQAIPVSIAGKDLLASSKTGSGKTLAFVLPMLHKSLKNKAFSAKDPRGVILA 86
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV ++ + L VG + D++ L + PK
Sbjct: 87 PTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKALRRYPKF-------------- 132
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+VATPGRL DH++ R L+ L L++DE DR+L
Sbjct: 133 -------IVATPGRLADHLD-HRSLYLDGLETLILDEADRMLDLG--------------- 169
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLD 242
F P L+ I R R ++ SATL + N++A
Sbjct: 170 ----------FAPE----LRRIHNAAKHR--------RRQTLMFSATLDHAEVNEIAFEM 207
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L P + G + + + + + L K L +L+ ++ I+FT++ T R
Sbjct: 208 LDAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERILEEAEYKQLIIFTATRVDTER 267
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LN E ++K SG Q+ R+ + F ++LV++D +RG+D+ V +V
Sbjct: 268 LTDKLN---EKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHV 324
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
VN+D P + + Y+HR GRT RAG G +L+ + FK++
Sbjct: 325 VNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRV 367
>gi|386283896|ref|ZP_10061119.1| dead/deah box helicase domain-containing protein [Sulfurovum sp.
AR]
gi|385344799|gb|EIF51512.1| dead/deah box helicase domain-containing protein [Sulfurovum sp.
AR]
Length = 445
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 179/397 (45%), Gaps = 73/397 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--- 57
G S P+Q A+ P +F RD+ + TG+GKT ++LPI+Q LS V
Sbjct: 20 GYESATPIQKALI-----PAMFTGRDIMAGAQTGTGKTAGFSLPILQELSKHFVEGQHYP 74
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+A++++PTR+LA QV A + L + G +++ + + +L+AGI
Sbjct: 75 KAVILVPTRELAKQVHASIEAYGKYLPLKSIVLYGGANLTSQAN------RLKAGI---- 124
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
DI+VAT GRL++HI + LE + YLV+DE D +L + + +L
Sbjct: 125 -----------DIIVATSGRLLEHI-GQKNINLESVAYLVLDEADTILDMGFVHEVGKIL 172
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
Q +N +++SATL+ +
Sbjct: 173 QHLPDKRQN--------------------------------------VLISATLSGSVKR 194
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
LA+ L P + ++ + +E E + K L L+ S ++ +VFT
Sbjct: 195 LAEQILQKPKLIEV-DSMGTSAQSVEQIVYPVEKEKKTELLSYLIGSRNYKQVLVFTRKK 253
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
E + LN G + I G + RS+ L+ F+EGK++VLV++D RG+D+
Sbjct: 254 EVADEVSKELNLSGLITAVI---HGGKTSGERSRALEGFKEGKVRVLVATDIAARGLDIP 310
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ V+NYD P YIHR GRT RAG G TL+
Sbjct: 311 ALGVVMNYDIPHVTGDYIHRIGRTGRAGAKGLAITLI 347
>gi|357418532|ref|YP_004931552.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355336110|gb|AER57511.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 456
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 182/408 (44%), Gaps = 73/408 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAVRCLRALVVLPTR 66
+ ++ I L RDL + TG+GKT ++ LP++Q L R R RALV+ PTR
Sbjct: 27 IQEQAIPLALAGRDLMAGAQTGTGKTAAFGLPLLQHLGTHPQAVTRGPRRPRALVLTPTR 86
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK--LEAGICYDPEDVLQEL 124
+LA QV + + S+ ++ P + G+ P+ L L
Sbjct: 87 ELATQVHESLR---------------------DYSKYLRIPSATIYGGVGMGPQ--LDTL 123
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
+ VD+++A PGRL+DH+ R L + LV+DE DR+L
Sbjct: 124 RRGVDLVIACPGRLIDHLE-RRSVDLSGIEVLVLDEADRMLDMG---------------- 166
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
FLPS ++R P ++ SAT + LA+ +H
Sbjct: 167 ---------FLPS------------IKRILAKLPKQNRQTLLFSATFDDNIKLLAREFMH 205
Query: 245 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 304
PL + + + E + +S K L+ LL E+ +VF + + +L
Sbjct: 206 DPLEIQA-TPKNTVHENITHRVHPVDSARKRDLLLHLLAEDSREQTLVFAKTKHGSDKLA 264
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L G I+ G + QS R + L+ F+ GK+ VLV++D RG+D++ + V+N
Sbjct: 265 LFLEKAG---IQTAAIHGNKSQSQRLRALRDFKAGKVTVLVATDIAARGIDIDQLPKVIN 321
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
+D P + Y+HR GRT R G G+ +L+ +++ K + +++ D D
Sbjct: 322 FDLPMVAEDYVHRIGRTGRNGSTGQAVSLVSQEDAKLLRAIVRLLDRD 369
>gi|427792247|gb|JAA61575.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 746
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 183/411 (44%), Gaps = 79/411 (19%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIV---QTLSNRAVRC--LRALVVLPTRDLALQVKDVF 76
L RD I S TGSGKTL+YALPI+ Q + + R +RA+V++PTR+LALQ + F
Sbjct: 220 LGRRDTLIKSHTGSGKTLAYALPILHCLQEIRPKLTRADGVRAVVIVPTRELALQTYEWF 279
Query: 77 AAIAPAVGLSV-GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135
++ A V G+ +G E + L K + I++ TP
Sbjct: 280 EKLSKACTWVVPGVLMGGEKKKSEKARLRK---------------------GLAIVIGTP 318
Query: 136 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
GRL DH+ T F+L + +LVVDE DR+L ++ + ++ L + E R + ++ L
Sbjct: 319 GRLTDHLEHTESFSLANTSWLVVDEADRMLELGFEESVSKIVTLWK---EQRRVEGTSVL 375
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL----FLTT 251
LSATLT+ KLA L L P+ + +
Sbjct: 376 -------------------------------LSATLTKGVEKLAGLTLEDPMTVDVAVES 404
Query: 252 GET---RYKLPERLESYKLICESKLKPLYLVALL----QSLGEEKCIVFTS---SVESTH 301
G + LP L Y L KL + L LL + K IVF + SV+ H
Sbjct: 405 GANELEEFVLPPGLSQYYLQVPVKLSQMALCCLLLEACVAAERGKVIVFLATQDSVDFEH 464
Query: 302 RLCT----LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
L + ++ + RI G Q R++ FRE VL ++D +RG+DV
Sbjct: 465 ALFSSVLGVMLEDTDKRIDFVRLHGEMTQHDRAEVFNRFREATSGVLFTTDVASRGIDVP 524
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
V+ +V P + Y+HRAGRTAR G G+ LL EV L Q+
Sbjct: 525 QVDLIVQCCVPLRPEEYVHRAGRTARIGAKGKVVLLLFPSEVGFLDVLAQR 575
>gi|449455778|ref|XP_004145628.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Cucumis
sativus]
Length = 715
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 204/442 (46%), Gaps = 61/442 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G S P+Q+A I GL +RD+ + TGSGKT ++ LP++ ++
Sbjct: 314 GYKSPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYITRLPPINEENEA 369
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q++D + +G+ V VG SI E G
Sbjct: 370 EGPYAVVMAPTRELAQQIEDETVKFSHYLGIKVVSIVGGQSIE------------EQGF- 416
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+++ ++++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 417 --------KIRQGCEVVIATPGRLLDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVM 467
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL DA +PS+ ++ + +K R M SAT+
Sbjct: 468 GVL------------DA---MPSS-----NLKPENEDEELDEKKIYRTTYM-FSATMPPA 506
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL +LG++ IVF
Sbjct: 507 VERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKESEKFYRLQNLLDNLGDKTAIVFV 565
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D RG+
Sbjct: 566 NTKKNADTVAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 622
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D+ V +V+NYD P+ I+ Y HR GRT RAG+ G T L + + F L Q +
Sbjct: 623 DIPDVAHVINYDMPSNIEMYTHRIGRTGRAGKTGVATTFLTLQDSEVFYDLKQMLIQSNS 682
Query: 415 PIHSIPSSLIESLRPVYKSGDV 436
P +P L +K G +
Sbjct: 683 P---VPPELARHEASKFKPGSI 701
>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
Length = 443
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 180/403 (44%), Gaps = 66/403 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + ++ I + +DL +S TGSGKTL++ LP++ ++L ++ RA+++
Sbjct: 21 FKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILA 80
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV ++ + L +G + D++ L + PK
Sbjct: 81 PTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPKF-------------- 126
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+VATPGRL DH+ R LE L L++DE DR+L
Sbjct: 127 -------IVATPGRLADHLE-HRSLYLEGLETLILDEADRMLDLG--------------- 163
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLD 242
F P L+ I + R R ++ SATL D N +A
Sbjct: 164 ----------FAPE----LRRIHKAAKHR--------RRQTLMFSATLDHADVNDIAAEM 201
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L+ P + G + + + + + L K L +L + I+FT++ + T R
Sbjct: 202 LNSPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIFTATRDDTER 261
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LN E ++K SG Q+ R+ + F ++LV++D +RG+D+ V +V
Sbjct: 262 LTAKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHV 318
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+N+D P + + Y+HR GRT RAG G +L+ + FK++
Sbjct: 319 INFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 361
>gi|221065934|ref|ZP_03542039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710957|gb|EED66325.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 430
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 184/414 (44%), Gaps = 91/414 (21%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------V 54
+G+ P+Q E I L RDL +PTGSGKT++Y LP++Q + V
Sbjct: 19 LGLRDATPIQT----EAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQKRGQTGFV 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK---LEA 111
R L L+++PTR+LALQV + S++D +L ++P+ +
Sbjct: 75 RPLATLILVPTRELALQVHE--------------------SLSDITRQLREQPRSRVVYG 114
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAY 169
G+ +P+ + +L+ + D LVATPGRL+D + NA R T++H LV+DE DRLL + +
Sbjct: 115 GVSINPQ--MMQLRGSADFLVATPGRLLDLVENNAVRLNTVQH---LVLDEADRLLDQGF 169
Query: 170 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
L VL L LP+ +L + SA
Sbjct: 170 AEELNRVLAL---------------LPAKRQTL-----------------------LFSA 191
Query: 230 TLTQDPNKLAQLDLHHPLFLTT----GETRYKLPERLESYKLICESKLKPLYLVALLQSL 285
T Q+ LA LH P+ + PE + + +S + L L++
Sbjct: 192 TFPQNVEALAARLLHDPVRVQVDADQAAEHSASPENISQRAIAVDSNRRTQLLRQLVKQ- 250
Query: 286 GE-----EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
GE E+ +VF + + L L G I + G Q R + L F+ +
Sbjct: 251 GENQPEWERALVFVAKRHTAEMLADKLYKAG---IYATTFHGDMSQGARKEVLDQFKAKR 307
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
Q+L+++D RG+D+ + V+NYD P YIHR GRT RAG G T +
Sbjct: 308 WQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFV 361
>gi|449484526|ref|XP_004156907.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
21-like [Cucumis sativus]
Length = 715
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 204/442 (46%), Gaps = 61/442 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G S P+Q+A I GL +RD+ + TGSGKT ++ LP++ ++
Sbjct: 314 GYKSPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYITRLPPINEENEA 369
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q++D + +G+ V VG SI E G
Sbjct: 370 EGPYAVVMAPTRELAQQIEDETVKFSHYLGIKVVSIVGGQSIE------------EQGF- 416
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+++ ++++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 417 --------KIRQGCEVVIATPGRLLDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVM 467
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL DA +PS+ ++ + +K R M SAT+
Sbjct: 468 GVL------------DA---MPSS-----NLKPENEDEELDEKKXYRTTYM-FSATMPPA 506
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL +LG++ IVF
Sbjct: 507 VERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKESEKFYRLQNLLDNLGDKTAIVFV 565
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D RG+
Sbjct: 566 NTKKNADTVAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 622
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D+ V +V+NYD P+ I+ Y HR GRT RAG+ G T L + + F L Q +
Sbjct: 623 DIPDVAHVINYDMPSNIEMYTHRIGRTGRAGKTGVATTFLTLQDSEVFYDLKQMLIQSNS 682
Query: 415 PIHSIPSSLIESLRPVYKSGDV 436
P +P L +K G +
Sbjct: 683 P---VPPELARHEASKFKPGSI 701
>gi|430813904|emb|CCJ28790.1| unnamed protein product [Pneumocystis jirovecii]
Length = 464
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 183/392 (46%), Gaps = 60/392 (15%)
Query: 12 AVWQETIGPGLFERDLCINSP-TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 70
A+ IGP + E CI S TGSGKT+++ LPI+Q LS AL++ PTR+LAL
Sbjct: 67 AIQATCIGP-ILEGQNCIGSAKTGSGKTMAFTLPIIQILSQDPYGVF-ALILTPTRELAL 124
Query: 71 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 130
Q+ D A I ++ L +G + + L+KRP I
Sbjct: 125 QISDQLAIIGTSINLKHTTIIGGVDMITQALILVKRP---------------------HI 163
Query: 131 LVATPGRLMDHINATRGFTL---EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
++ATPGRL DHI ++ T+ + + +LV+DE DRLL + + +++ ENR
Sbjct: 164 VIATPGRLADHIRSSGQETINAFKRVRFLVLDEADRLLTPNFSKDMQECIRIL-PKAENR 222
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
F + +++ ++ E G K P + V+ +++T P+ L Q + P
Sbjct: 223 --QTLLFTATITDAIRKLQTQSSESGKK----PLFLYNVIKSSVT-IPSSLIQTYIFIPS 275
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
+ E+Y LY + Q E+ IVFT+ + LC +
Sbjct: 276 HVK------------ETY----------LYRIFNTQEYKEKSTIVFTNRTRTAELLCRM- 312
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
F L +K+ Q R ++L+ F+ ++L+++D +RG+D+ V ++NYD
Sbjct: 313 --FCILELKVTALHSEMPQKKRIQSLERFKAEASKILIATDVASRGLDIPFVKLIINYDV 370
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
P YIHR GRTARA + G T + + ++
Sbjct: 371 PKDPNDYIHRVGRTARAEKSGESITFVSQRDI 402
>gi|255957139|ref|XP_002569322.1| Pc21g23550 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591033|emb|CAP97252.1| Pc21g23550 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 819
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 134/261 (51%), Gaps = 53/261 (20%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
DLC+++ TGSGKTLSY LP+V L R LR L+V+PTR+L Q ++ A L
Sbjct: 276 DLCVSAATGSGKTLSYVLPLVTALPPRPASRLRGLIVVPTRELVKQARESCELCASGSRL 335
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDP--------------------EDVLQEL- 124
+G AVG +I DE L++ ++ Y+P ED + E
Sbjct: 336 HIGSAVGNVAIKDEQKLLMRVDQV-----YNPAIQQQQRDGLKGNDWMNLSLEDCVNEAI 390
Query: 125 -------------QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ VDIL+ TPGRL+DHI T+GFTL+HL +LV+DE DRLL E++Q
Sbjct: 391 DSSGSLPGHIQRSEPNVDILICTPGRLVDHIRYTKGFTLKHLEWLVIDEADRLLNESFQE 450
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
W+ V+ ++ N TF P K + G+ KP PR K++LSAT+
Sbjct: 451 WVDVVM-----NSLNSREAPETFGPGG----KLLSELGL--SIDAKP-PR--KVILSATM 496
Query: 232 TQDPNKLAQLDLHHPLFLTTG 252
T+D +KL L L +P + G
Sbjct: 497 TRDISKLNSLRLANPKMVIIG 517
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 281 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L+ S + ++FT S ES RL L++ L ++ + S KTL A+R+G
Sbjct: 648 LVPSPSRKTVLIFTKSSESASRLARLISLLHPALAKRVGTIIKSNKSSASRKTLTAYRQG 707
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+I V+V++D +RG+D+E + +V+NYD P I TY+HR GRTARAG+ G ++L+ E
Sbjct: 708 RISVIVATDRASRGLDLESLTHVINYDIPTSITTYVHRVGRTARAGRAGSAWSLVAHREG 767
Query: 400 KRF 402
+ F
Sbjct: 768 RWF 770
>gi|242022824|ref|XP_002431838.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
corporis]
gi|212517170|gb|EEB19100.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
corporis]
Length = 543
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 206/417 (49%), Gaps = 72/417 (17%)
Query: 18 IGPGLF-ERDLCINSPTGSGKTLSYALPIVQTLS-------NRAVRCLR---------AL 60
+GP + + D+ + TGSGKTL++ +PIV + N+++ L+ AL
Sbjct: 33 LGPAICGQMDILGAAETGSGKTLAFGIPIVNGILSIMEKELNQSIESLKMKNEKNNLYAL 92
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI--KRPKLEAGICYDPE 118
++ PTR+LA+QV++ I +++ L VG +A E E I KRP
Sbjct: 93 ILTPTRELAVQVRNHLNDICKYTKINIALIVG--GLAHEKQERILNKRP----------- 139
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTV 176
+I+VATPGRL + +N +++L YL +DETDR+L + + L +
Sbjct: 140 ----------EIIVATPGRLWELVNDNNIHLSNIKNLRYLAIDETDRMLEKGHFTELNDL 189
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRC-GVERGFKDK---PYPRLVKMVLSATLT 232
L+ NEN+ FL SA +L + +G K+K P +L ++
Sbjct: 190 LERINL-NENKKKKRQNFLFSA--TLTVVHDPPSYLKGKKNKRITPGQKLQDLI------ 240
Query: 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
+++ + +P + T + E L +K++C+ + K YL L+S + + ++
Sbjct: 241 ------SKIGITNPKIVDITNT-HVTAENLSEFKILCQFEEKDYYLFQCLRS-QKGRFMI 292
Query: 293 FTSSVESTHRLCTLLN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
F +S+ RL LLN +F L + ++ ++ Q R + L+ FR+ +L+++D
Sbjct: 293 FCNSIGCVKRLANLLNIVNFKPLPL----HANME-QKQRLRNLEKFRDNPDSLLLATDVA 347
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
RG+D+ V+ V++Y P + Y+HR+GRTARA +G L+ E+ ++KLL
Sbjct: 348 ARGLDIPNVDYVIHYQVPKTAEIYVHRSGRTARANTVGNALLLIEPKELGLYRKLLH 404
>gi|453074826|ref|ZP_21977616.1| ATP-dependent RNA helicase [Rhodococcus triatomae BKS 15-14]
gi|452763775|gb|EME22050.1| ATP-dependent RNA helicase [Rhodococcus triatomae BKS 15-14]
Length = 636
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/425 (26%), Positives = 193/425 (45%), Gaps = 73/425 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR----AVRCL 57
GI+ P+Q + I R++ + TGSGKTL++ LP++ L+ R A +
Sbjct: 48 GITVPSPIQAMAIPDAI----AGRNVLGRAQTGSGKTLAFGLPMLARLAGRDDRPAAKRP 103
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
RALV++PTR+LA+QV D A VGL V AVG ++ +L +
Sbjct: 104 RALVLVPTRELAVQVVDSLLPYASTVGLKVRSAVGGMVFTKQVDQLAR------------ 151
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
VDILVATPGRL DH+ L+ + + +DE D++ + + +++
Sbjct: 152 ---------GVDILVATPGRLGDHLRQET-CVLDEVEMIALDEADQMADMGFLPEVRSII 201
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
+ TR D + +++ SATL ++
Sbjct: 202 EQTRPDGQ--------------------------------------RLLFSATLDREVQS 223
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
L + L + T + R + +E Y L + K L + G + I+F +
Sbjct: 224 LVRRFLPDHVEHATADGRASVTT-MEHYVLNVDRGQKDAVLAEIGARSGG-RTIMFARTK 281
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
+ L G + + G + Q+ R++ L+ F+ G+ +LV++D RG+ V+
Sbjct: 282 LGAEGITERLRDVG---VVAEALHGGKAQNQRTRVLERFKNGRTPILVATDVAARGIHVD 338
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 417
G++ VV+ D PA K Y+HRAGRTARAG+ G +++ ++ + ++L A D+ ++
Sbjct: 339 GIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVSIVLPNQRRMVRRLTDTAGVDAVEVN 398
Query: 418 SIPSS 422
P S
Sbjct: 399 VRPGS 403
>gi|323453625|gb|EGB09496.1| hypothetical protein AURANDRAFT_10388, partial [Aureococcus
anophagefferens]
Length = 589
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 188/391 (48%), Gaps = 49/391 (12%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLR-------ALVVLP 64
+ ++ I GL RD+ + TGSGKT ++ +P+++ +S A R ALV+ P
Sbjct: 202 IQRQAIPVGLELRDIIGVAETGSGKTAAFCIPMIRYISKLPAARIASLADDGPLALVMAP 261
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
TR+LA Q+ + + ++V VG SI D+ VL+E
Sbjct: 262 TRELATQIAGECKKLTAHMDMNVTTVVGGMSIEDQAF------------------VLRE- 302
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
V+I+V TPGR+ D ++ T+ L Y+V+DE DR++ ++ + ++L+
Sbjct: 303 --GVEIIVGTPGRIQDCLD-TQYLVLNQANYVVLDEADRMIDMGFEPQVHSILE------ 353
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+ L S +R V+RG + R+ M SAT+ KLA+ L
Sbjct: 354 -----EMGGLLLSEDDIEMEQQRLAVQRG---EACYRITAM-FSATMPSAVEKLAKKFLR 404
Query: 245 HPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 303
HP + G+ +R+ + L I E+ K + L + ++K +VF + + L
Sbjct: 405 HPAIVCIGDEDSGKNKRIAQHVLYIAEAAKKNAVVDILRKKKAQDKYLVFCNEKKGCDAL 464
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
+L+ G LR + G + Q R TL A++ G + VLV++D RG+D+ V +VV
Sbjct: 465 AKVLSTAG-LRSSV--LHGGKTQEHRDATLAAYKAGSVTVLVATDVAGRGLDIPDVAHVV 521
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
NYD P I+ Y HR GRT RAG+ G TLL
Sbjct: 522 NYDMPLKIENYSHRIGRTGRAGKDGVATTLL 552
>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
Length = 720
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 114/429 (26%), Positives = 185/429 (43%), Gaps = 81/429 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLR- 58
+G + PVQ ++ I L +D+ + TGSGKT + LPIV+ L + VR R
Sbjct: 151 LGFAEPTPVQ----RDVIPVALRSQDILAMAETGSGKTGGFLLPIVERLCQASHVRSRRK 206
Query: 59 ---------------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
ALV+LPTR+LA+Q + L+ L VG
Sbjct: 207 DPHTGRITGGRAATKALVLLPTRELAVQCYKMLRDFTKFAPLTSCLVVG----------- 255
Query: 104 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163
+D + E+++ D+++ATPGR++D + + LE +V+DE DR
Sbjct: 256 ----------GFDAQKQASEMRAQPDVVLATPGRVLDLLLNSPNIHLEMCEIVVLDECDR 305
Query: 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 223
LL ++ T++Q + C R
Sbjct: 306 LLEMGFRDECLTIIQ---------------------------KHCNRSRQT--------- 329
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 283
M+ SAT+ Q+ KLA++ L P+ + T + P + + + + + L+A
Sbjct: 330 -MMFSATMNQEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRVTSEQQREATLLAACT 388
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
++C++F + ++ HR+ LL G ++K E G Q R K L F GK
Sbjct: 389 KHFTKRCLIFCAQKKTAHRMAVLLGLVG--KVKFAELHGNLSQQQRVKALADFESGKATH 446
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
L+ +D RG+D+ V V+N++ P + Y+HR GRTARAG G T+ E K+ K
Sbjct: 447 LICTDLAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGASGTSVTMYTPGEYKQVK 506
Query: 404 KLLQKADND 412
+ +K D
Sbjct: 507 HIAKKCTAD 515
>gi|149376365|ref|ZP_01894128.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
gi|149359379|gb|EDM47840.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
Length = 428
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 186/407 (45%), Gaps = 76/407 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
+G P+Q ET+ L +DL + TG+GKT ++ + +Q++ +R
Sbjct: 29 IGFEHCTPIQA----ETLPFTLACQDLIGQAQTGTGKTAAFLITAIQSMLETPIPKEDRF 84
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
R L + PTR+LA+Q+ + G +V VG G+
Sbjct: 85 ASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVTVVG-------------------GM 125
Query: 114 CYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
YD + D LQ VDILVATPGRL+D + + F L+ L L++DE DR+L +
Sbjct: 126 NYDKQRDQLQ--NEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEADRMLD---MGF 179
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+P V ++ IR+C P ++ SAT
Sbjct: 180 IPDVKRI-------------------------IRKC--------TPKEERQTLLFSATFN 206
Query: 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCI 291
QD LA + F+ E K ER+ ++ L+ E + P+ LV LQ EK I
Sbjct: 207 QDVLNLASMWTKSAEFVEI-EPEQKTAERVKQTVYLVGEDEKLPV-LVNYLQRPEVEKAI 264
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
VF + + L L + G +K+ SG Q+ R KTL+ F+ G IQVLV++D
Sbjct: 265 VFANRRDQCRDLDEDLRNQG---VKVALMSGEIAQNKRLKTLEQFKNGSIQVLVATDVAG 321
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
RG+ V+GV +V NY+ P + Y+HR GRT RAG+ G + +D+
Sbjct: 322 RGIHVDGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSVSFASEDD 368
>gi|451972716|ref|ZP_21925920.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
gi|451931409|gb|EMD79099.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
Length = 443
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 180/403 (44%), Gaps = 66/403 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + ++ I + +DL +S TGSGKTL++ LP++ ++L ++ RA+++
Sbjct: 21 FKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILA 80
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV ++ + L +G + D++ L + PK
Sbjct: 81 PTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPKF-------------- 126
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+VATPGRL DH+ R LE L L++DE DR+L
Sbjct: 127 -------IVATPGRLADHLE-HRSLYLEGLETLILDEADRMLDLG--------------- 163
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLD 242
F P L+ I + R R ++ SATL D N +A
Sbjct: 164 ----------FAPE----LRRIHKAAKHR--------RRQTLMFSATLDHADVNDIAAEM 201
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L+ P + G + + + + + L K L +L + I+FT++ + T R
Sbjct: 202 LNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIFTATRDDTER 261
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LN E ++K SG Q+ R+ + F ++LV++D +RG+D+ V +V
Sbjct: 262 LTAKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHV 318
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+N+D P + + Y+HR GRT RAG G +L+ + FK++
Sbjct: 319 INFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 361
>gi|381395029|ref|ZP_09920736.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379329307|dbj|GAB55869.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 399
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 192/413 (46%), Gaps = 82/413 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV----RCL 57
G ++ P+Q ++ I L +D+ + TG+GKT ++ LP++Q + +
Sbjct: 20 GYTTPTPIQ----EQAIPAVLSGKDVMAAAQTGTGKTAAFTLPLIQRFATNYSEPRPNHI 75
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE--ISELIKRPKLEAGICY 115
+ALV+ PTR+LA QV ++ DE ++ I+ + G+
Sbjct: 76 KALVLTPTRELAAQV---------------------AANIDEYKVNTPIRSTVVFGGVSI 114
Query: 116 DPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
+P+ ++ L+ DILVATPGRL+D NA + + LV+DE DR+L + +
Sbjct: 115 NPQ--MKHLRRGCDILVATPGRLLDLFQQNAVK---FSDVSVLVLDEADRMLDMGFIHDI 169
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L+L +N ++ SAT ++
Sbjct: 170 KRILKLLPQKRQN--------------------------------------LLFSATFSE 191
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
D LA +++P+ ++ P +E + E K L+ L++S G ++ +VF
Sbjct: 192 DIRGLASRLVNNPVEISVTPNNAAAPS-VEHSIVYLEKANKSKLLIHLIESNGWQQALVF 250
Query: 294 TSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
T + +RL L +H I G + Q R+K L +F+ G++++LV++D R
Sbjct: 251 TRTKHGANRLTKQLCSH----EISAAAIHGNKSQGARTKALASFKNGELRILVATDIAAR 306
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
G+D++ + NVVNYD P + Y+HR GRT RAG +G+ + + ++ K+ +
Sbjct: 307 GIDIQQLPNVVNYDLPNVPEDYVHRIGRTGRAGSVGQAVSFVTAEDFKQLSDI 359
>gi|403331185|gb|EJY64526.1| putative ATP-dependent RNA helicase DDX10 [Oxytricha trifallax]
Length = 961
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 185/407 (45%), Gaps = 40/407 (9%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVL 63
F V + I + RD+ +++ TGSGKTLSY +PIV+ L + ++ L AL+++
Sbjct: 128 FIKMTEVQRAAISHAIAGRDVVVSARTGSGKTLSYLVPIVERLYHERWSSMDGLGALILV 187
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
P R+LALQ +V + LS GLA+G + E QE
Sbjct: 188 PVRELALQAFEVLRSFGAFHDLSAGLAIGGKDLNYE----------------------QE 225
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
++IL+ TPGRL+ H+N + G +L LV+DE DR+L ++ + +++
Sbjct: 226 RIRGMNILICTPGRLLQHMNESEGLDTSNLKMLVIDEVDRILDMGFKDTMEQIMR----- 280
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
N + + F + LK + R ++ D Y + +L D N A +
Sbjct: 281 NLPKKTQTMLFSATVGKILKDMARVNLK---PDHEYICIHDYDSIESLANDYNPNASAED 337
Query: 244 HHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
+ T KL L Y +I E KL L+ + L+S + KCIVF S+ +
Sbjct: 338 KMIVDQLKSITPVKL---LHFYMVINIEDKLDTLF--SFLKSHQKNKCIVFFSACKQVRF 392
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
+L + + E G Q+Q+ R+ F E K VL +D +RG+D V+ V
Sbjct: 393 AYEAFKRL-KLGMIMLELHGRQKQTKRTAIYYEFVERKQAVLFCTDVASRGIDFPAVDWV 451
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
V YD P ++TYIHR GRTAR G E K K+ Q+
Sbjct: 452 VQYDCPEDLQTYIHRVGRTARYKSKGNALLFSTPAETKFIDKIQQRG 498
>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
Length = 513
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 185/409 (45%), Gaps = 69/409 (16%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q E I L RD+ + TG+GKT ++ LP++ L+ RA R RA
Sbjct: 21 GYTTATPIQA----EAIPMALQGRDVLGIAQTGTGKTAAFTLPMIDRLAAGRAKARMPRA 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV F A L+ L +G G+ + +D
Sbjct: 77 LVIAPTRELADQVSASFEKYAMGQKLTWALLIG-------------------GVSF--KD 115
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
Q+L VD+L+ATPGRL+DH RG + + +VVDE DR+L + L + +
Sbjct: 116 QEQKLDRGVDVLIATPGRLLDHFE--RGKLLMTGVQIMVVDEADRMLDMGFIPDLERIFK 173
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LT + + F A+ +P RL K L+ DP
Sbjct: 174 LTPAKKQTLFFSAT--MPPEIT--------------------RLTKQFLN-----DP--- 203
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+++ P TT ET + R+ S + K K L L+ IVF +
Sbjct: 204 VRIEASRPA--TTAETITQYLVRIPS----ADPKAKRTALRELIGRAEINNGIVFCNRKT 257
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
+ L G G Q+ R +TL++FR G++++L +SD RG+D+
Sbjct: 258 EVDIVAKSLKKHG---FDAAAIHGDLDQATRMRTLESFRNGELKLLCASDVAARGLDIPA 314
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
V++V N+D P + Y+HR GRT RAG+ G F ++ + K K+L+
Sbjct: 315 VSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAFMIVTPADSKNLDKVLK 363
>gi|45185883|ref|NP_983599.1| ACR197Wp [Ashbya gossypii ATCC 10895]
gi|74694822|sp|Q75BS4.1|DHH1_ASHGO RecName: Full=ATP-dependent RNA helicase DHH1
gi|44981673|gb|AAS51423.1| ACR197Wp [Ashbya gossypii ATCC 10895]
gi|374106805|gb|AEY95714.1| FACR197Wp [Ashbya gossypii FDAG1]
Length = 484
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 192/428 (44%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E I L RD+ + G+GKT ++ +P ++ + + V ++A
Sbjct: 42 MGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLEIVKPK-VNKIQA 100
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + G+S + G +++ D+I
Sbjct: 101 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI------------------- 141
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L V +LV TPGR++D + + + L V+DE D++L +++ + +L
Sbjct: 142 --MRLNEPVHVLVGTPGRVLD-LASRKVADLSECSLFVMDEADKMLSRDFKSLVEQIL-- 196
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+FLP SL +P VK + L NK
Sbjct: 197 -------------SFLPQNHQSL-----------LFSATFPLTVKEFMVKHL----NKPY 228
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 229 EINLMDELTLKGITQYYAFVE--ERQKLHC--------LNTLFSKLQINQAIIFCNS--- 275
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L +L +Q R+K FR+GK++ LV SD +TRG+D++ V
Sbjct: 276 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 335
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +I
Sbjct: 336 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAI 392
Query: 420 PSSLIESL 427
P+ + +SL
Sbjct: 393 PAQIDKSL 400
>gi|255729496|ref|XP_002549673.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
gi|240132742|gb|EER32299.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
Length = 554
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 193/428 (45%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E+I L RD+ + G+GKT S+ +P +Q + + + ++A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPK-LNKVQA 101
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + +G+ + G +S+ D+I L +DP
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHLGVQCMVTTGGTSLRDDIVRL-----------HDP-- 148
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
V ILV TPGR++D + A + L V+DE D++L ++ + +L+
Sbjct: 149 --------VHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEF 199
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
++ + A+ +P VK + L NK
Sbjct: 200 FPANRQALLFSAT--------------------------FPLAVKSFMDQHL----NKPY 229
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F + S
Sbjct: 230 EINLMDELTLKGISQFYAFVE--EKQKLHC--------LNTLFSKLQINQSIIFCN---S 276
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L EL Q R+K FR+GK++ LV SD +TRG+D++ V
Sbjct: 277 TNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAV 336
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L+ ++ K+ Q+ + I I
Sbjct: 337 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQELGTE---IKPI 393
Query: 420 PSSLIESL 427
P+++ ++L
Sbjct: 394 PATIDKAL 401
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 184/415 (44%), Gaps = 81/415 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---------R 52
GI+ LFP+Q AV + P L RDL + TG+GKTL++ +PI++ LS R
Sbjct: 135 GITHLFPIQRAV----LVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDDEKRTSQRR 190
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
+ R R LV+ PTR+LA QV+ AP LS G G
Sbjct: 191 SGRLPRVLVLAPTRELAKQVEKEIKESAPY--LSTVCVYG-------------------G 229
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+ Y + L VD++V TPGR++D I L + LV+DE D++L ++
Sbjct: 230 VSYITQQ--NALSRGVDVVVGTPGRIIDLIKGN-SLKLGEVQNLVLDEADQMLAVGFEED 286
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+ +L+ S+ ++ M+ SAT+
Sbjct: 287 VEVILEKLPSERQS--------------------------------------MLFSATMP 308
Query: 233 QDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKC 290
KLA+ L +PL + G+ KL E ++ Y + + K L L+ + K
Sbjct: 309 AWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITVYAKGGKT 368
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
IVFT + + L + I + G Q R +TL FR+GK VLV++D
Sbjct: 369 IVFTQTKRDADEVSMALTN----SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 424
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
RG+D+ V+ +++Y+ P +T++HR+GRT RAG+ G + + + K L
Sbjct: 425 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSL 479
>gi|260945084|ref|XP_002616840.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238850489|gb|EEQ39953.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 517
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 188/421 (44%), Gaps = 69/421 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E+I L RD+ + G+GKT S+ +P +Q + + + +A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFVIPTLQMVKPKLNKT-QA 101
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + +G++ + G +++ D+I L +DP
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHLGINCMVTTGGTNLKDDIMRL-----------HDP-- 148
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL-VVDETDRLLREAYQAWLPTVLQ 178
V +LV TPGR++D A+R C L ++DE D++L ++ + +L
Sbjct: 149 --------VHVLVGTPGRVLDL--ASRNLADFSECPLFIMDEADKMLSREFKNVIEQIL- 197
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
TF P SL +P VK + LT K
Sbjct: 198 --------------TFFPEGRQSL-----------LFSATFPYAVKSFMDKHLT----KP 228
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 229 YEINLMDELTLRGISQFYAFVE--EKQKLHC--------LNTLFSKLQINQSIIFCNS-- 276
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
T+R+ L EL Q R+K FR+GK++ LV SD +TRG+DV+
Sbjct: 277 -TNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDVQA 335
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418
VN V+N+D P +TY+HR GR+ R G LG L+ ++ K+ Q+ + PI +
Sbjct: 336 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTEINPIPA 395
Query: 419 I 419
+
Sbjct: 396 V 396
>gi|424036922|ref|ZP_17775835.1| type III restriction enzyme, res subunit, partial [Vibrio cholerae
HENC-02]
gi|408896112|gb|EKM32294.1| type III restriction enzyme, res subunit, partial [Vibrio cholerae
HENC-02]
Length = 341
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 123/374 (32%), Positives = 178/374 (47%), Gaps = 68/374 (18%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 72
E I L RD+ ++PTG+GKT ++ LP +Q L + R R L++ PTR+LA+QV
Sbjct: 32 EAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQDFPRRKPGPARILILTPTRELAMQV 91
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-DPEDVLQELQSAVDIL 131
D A+A L++ G G+ Y + D+L Q DI+
Sbjct: 92 ADQARALAKNTKLNIFTITG-------------------GVQYQEHADILATTQ---DIV 129
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
VATPGRL ++I+A R F + +L++DE DR+L + PTV +L+ NE R+
Sbjct: 130 VATPGRLREYIDAER-FDCRAIEWLILDEADRMLDMGFA---PTVDRLS---NECRWR-K 181
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
T L SA T+ GVE GF +A L +P A++D PL
Sbjct: 182 QTLLFSA-----TLEGKGVE-GF-------------TADLLNEP---AEIDAKSPL---- 215
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
R K+ + E KL L + Q+ E+ IVF + E RL L
Sbjct: 216 -RERKKIAQWYHRAD-DAEHKLALLKHIITEQA---ERTIVFLKTRE---RLAELRAQLE 267
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+I G Q R+ + FREG + VL+++D RG+D+ V++V+NYD P
Sbjct: 268 SAQIPCSWIQGEMPQDRRNNAISRFREGTVNVLLATDVAARGIDLPDVSHVINYDMPRTA 327
Query: 372 KTYIHRAGRTARAG 385
Y+HR GRTARAG
Sbjct: 328 DVYLHRIGRTARAG 341
>gi|384498821|gb|EIE89312.1| hypothetical protein RO3G_14023 [Rhizopus delemar RA 99-880]
Length = 808
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 122/439 (27%), Positives = 202/439 (46%), Gaps = 44/439 (10%)
Query: 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 62
SS P+Q ++T+ L RD+ ++ TGSGKTL++ +PIVQ L+ L L++
Sbjct: 271 FSSPTPIQ----EKTLPLALQGRDIVGSAETGSGKTLAFGIPIVQYLATHEKEDLSGLIL 326
Query: 63 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 122
PTR+LA+QVKD A +A + VG G+ ++ L
Sbjct: 327 TPTRELAIQVKDHIANVALFTDIRCVAIVG-------------------GMSAQKQERL- 366
Query: 123 ELQSAVDILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVL--- 177
L+ DI+VATPGRL + + + + L+ + +LV+DE DR+L + + L +L
Sbjct: 367 -LKGKPDIIVATPGRLWELFSGNQEYMDMLKRIKFLVLDEADRMLEKGHFEELTNILNTL 425
Query: 178 ----QLTRSDNENRFSDASTFLPSAFGSLKT-IRRCGVERGFKDKPYPRLVKMVLSATLT 232
Q T E LP G +T I + + + + K T T
Sbjct: 426 STKRQTTTDWPEEIGQGNRKILPQDLGVHQTFIYTATLSKDIRFNVKAKKRKATAQPTGT 485
Query: 233 QDP--NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 290
D +++ D L T E + RL K+ C K +Y+ + +
Sbjct: 486 MDDLLSRIEFADQEPALIDMTSEN--IVASRLLEAKIDCLQNEKDVYVYYFVTRYP-GRT 542
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
I+F +S+++ RL + F L +++ +Q R K L F+ VLV+SD
Sbjct: 543 IIFVNSIDAIRRLVPV---FKLLNVEVLGLHAQMQQKQRLKNLDRFKANDKAVLVASDVA 599
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK-A 409
RG+D+ V +V++Y P + Y+HR+GRTARA + G L +E K ++KL Q
Sbjct: 600 ARGLDIPSVEHVIHYQLPRSGEIYVHRSGRTARANRDGISLLLCGPEETKIYQKLCQTLR 659
Query: 410 DNDSCPIHSIPSSLIESLR 428
N+ P+ + +++ S++
Sbjct: 660 KNEEYPLFPVDLNILRSMK 678
>gi|448103925|ref|XP_004200160.1| Piso0_002734 [Millerozyma farinosa CBS 7064]
gi|359381582|emb|CCE82041.1| Piso0_002734 [Millerozyma farinosa CBS 7064]
Length = 437
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 180/396 (45%), Gaps = 66/396 (16%)
Query: 15 QETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73
Q+ P + + CI + TGSGKT+++A PI+ S + LV+ PTR+LALQ+
Sbjct: 28 QKACIPKVLKGHDCIGGAKTGSGKTIAFASPILTKWSEDPY-GIYGLVLTPTRELALQIA 86
Query: 74 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 133
+ FAA+ + + V + VG I + EL +RP I++A
Sbjct: 87 EQFAALGATMNIKVCVIVGGDDIVKQALELQRRPH---------------------IVIA 125
Query: 134 TPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 190
TPGRL DHI + T L + YLV+DE DRLL ++ + L + ENR
Sbjct: 126 TPGRLADHILNSGEDTICGLRRVKYLVLDEADRLLSNSFGSDLERCFGVL-PKPENR--- 181
Query: 191 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 250
T L +A TI R K+KP P KL P+F+
Sbjct: 182 -QTLLFTA-----TI--TDAVRSLKEKPVPE--------------GKL-------PVFVN 212
Query: 251 TGET--RYKLPERLESYKLICESKLKPLYLVALLQSLGEEK--CIVFTSSVESTHRLCTL 306
+T +P L L S +K YL LL EK I+F V TH L
Sbjct: 213 EVDTVENIAIPSTLSIKYLFVPSYVKEAYLHNLLTLPEYEKTTTIIF---VNRTHTAELL 269
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
+L ++ QS R +L F+ ++L+++D +RG+D+ VN VVNYD
Sbjct: 270 RRMLRKLDFRVASLHSEMPQSERVNSLHRFKANAARILIATDVASRGLDIPDVNLVVNYD 329
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
PA +IHR GRTARAG+ G +++ + +V R
Sbjct: 330 IPADPDDFIHRVGRTARAGRKGDSISIVAEKDVNRI 365
>gi|357495749|ref|XP_003618163.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355493178|gb|AES74381.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 666
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 201/442 (45%), Gaps = 63/442 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G + P+Q+A +I GL +RD+ + TGSGKT ++ LP++ ++
Sbjct: 267 GYKTPSPIQMA----SIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEA 322
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q++D A +G+ V VG SI E G
Sbjct: 323 EGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIE------------EQGF- 369
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+++ +I++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 370 --------KIRQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVM 420
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL DA +PS+ ++ + +K R M SAT+
Sbjct: 421 GVL------------DA---MPSS-----NLKPENEDEELDEKRIYRTTYM-FSATMPPG 459
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL L ++ IVF
Sbjct: 460 VERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKESEKNYNLHRLLDQLNDKTAIVFV 518
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ +S L L + ++ G + Q R +L+ FR + VLV++D RG+
Sbjct: 519 NTKKSADFLAKNLEGY-----RVTTLHGGKSQDQREISLEGFRTKRYNVLVATDVAGRGI 573
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F +L Q +
Sbjct: 574 DIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYELKQMLIQSNS 633
Query: 415 PIHSIPSSLIESLRPVYKSGDV 436
P +P L +K G +
Sbjct: 634 P---VPHELARHEASKFKPGSI 652
>gi|156380897|ref|XP_001632003.1| predicted protein [Nematostella vectensis]
gi|156219053|gb|EDO39940.1| predicted protein [Nematostella vectensis]
Length = 432
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 186/411 (45%), Gaps = 74/411 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E+I L RD+ + G+GKT +Y +P+++ ++ C++ALV++PTR+LALQ
Sbjct: 73 IQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER-TDTTKNCIQALVLVPTRELALQT 131
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ + +G V + G +S+ D+I L + V ++V
Sbjct: 132 SQICIELGKHMGAQVMVTTGGTSLKDDILRLYNK---------------------VHVIV 170
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGR++D + + LV+DE D+LL ++ L Q+ + ENR
Sbjct: 171 ATPGRVLDLMKKKLA-DMSKCQMLVMDEADKLLSMDFKKMLE---QIIKHLPENR----Q 222
Query: 193 TFLPSAFGSLKTIRRCGVERGFKD----KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 248
L SA + R FK+ KPY + N + +L LH
Sbjct: 223 ILLFSATFPISV-------RDFKEKHLRKPY--------------EINLMDELTLH---- 257
Query: 249 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
G T+Y Y + E K K L L Q L + I+F +SV+ R+ L
Sbjct: 258 ---GVTQY--------YAFV-EEKQKVHCLNTLFQKLQINQSIIFCNSVQ---RVELLAR 302
Query: 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
EL QS R++ FR+G + LV SD TRG+D++ VN V+N+D P
Sbjct: 303 KILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNVVINFDFP 362
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
+TY+HR GR+ R G LG L+ D+ K+ + D + PI S+
Sbjct: 363 KNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIENELDTEIKPIPSV 413
>gi|195173765|ref|XP_002027657.1| GL15985 [Drosophila persimilis]
gi|198470361|ref|XP_001355297.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
gi|194114592|gb|EDW36635.1| GL15985 [Drosophila persimilis]
gi|198145414|gb|EAL32354.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
Length = 558
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 193/426 (45%), Gaps = 95/426 (22%)
Query: 2 GISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAV----RC 56
+S L Q + Q T P L E +D+ + + TGSGKT +YALP++Q + N + +C
Sbjct: 22 AVSKLGWEQPTLIQGTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLTATEQC 81
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE---LIKRPKLEAGI 113
+ A+V+ PT++L Q + V +A V +A + ++ ++E L +RP
Sbjct: 82 VSAVVLAPTKELCRQSRAVIEQLAEYCHKVVRVADISGTTSNTVTERHALAERP------ 135
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
DI+VATP +L++H A L+ + LVVDE D + Y+
Sbjct: 136 ---------------DIVVATPAKLLNHAKADGVVDLKKVETLVVDEADLIFAFGYEMDF 180
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L+ LPS + S+ ++SATL+
Sbjct: 181 KALLK---------------HLPSIYQSV-----------------------LVSATLSD 202
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIV 292
D ++ L LH+P+ L E ++L +++ E KP+ L ALL+ L K I+
Sbjct: 203 DVVRMKGLCLHNPVTLKLEEPDVVSQDQLTHQRILAEENDKPVILYALLKLQLIRGKTII 262
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD---- 348
F ++++ ++++ L FG I+ + S+R + F +G ++++SD
Sbjct: 263 FVNTIDRSYKIRLFLEQFG---IRACVLNPQLPASIRINMISQFNKGTYDIIIASDQHYL 319
Query: 349 --------------------AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
+ +RG+D + VNNV+N+D P + +YIHRAGRTAR G
Sbjct: 320 ERPDNGSQDKRKSTRGDFESSASRGIDFQSVNNVINFDFPLDVTSYIHRAGRTARGNNKG 379
Query: 389 RCFTLL 394
+L+
Sbjct: 380 SVLSLV 385
>gi|340053603|emb|CCC47896.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 768
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/427 (27%), Positives = 197/427 (46%), Gaps = 66/427 (15%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------- 53
+G S PVQV + G D+C + TGSGKT ++ LP++ TL R+
Sbjct: 149 LGFFSPTPVQVQAIPAILDGG----DVCARAVTGSGKTAAFLLPVLHTLLTRSPVKQAQT 204
Query: 54 ---VRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISELIKRPKL 109
R +RAL+++P+R+L +Q + V + GL+V LA+G
Sbjct: 205 CGKRRFVRALILVPSRELGMQCQHVLQQLLTFTTGLTVALAIG----------------- 247
Query: 110 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG----FTLEHLCYLVVDETDRLL 165
G+ ++ L++ DIL+ATPGRL+D ++ +G + + +V+DE D+LL
Sbjct: 248 --GVAQSAQEAA--LEAIPDILIATPGRLVDLLHNYKGPHGSLDVTGVEIVVLDECDKLL 303
Query: 166 REAYQAWLPTVLQLTRSDNENR----FSDASTFLPSAFGSLKTIRRCGVERGFK------ 215
+ + +L+ R E R FS T + F V+ G
Sbjct: 304 TATLKDQVEDILK--RVPEETRQVLMFSATMTQVVDEFAKEHLFEPKNVDVGHVALQSNL 361
Query: 216 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK--- 272
+ + R+ + +++ T + N +++ ++ R + + + + C+ +
Sbjct: 362 RQQFVRIRMLPVTSVHTHENNSATKMEAVDKENVSLKRGRCSVADGADQH---CQGEDAA 418
Query: 273 -----LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 327
+K YLVAL EK ++FT +THRL L N G + E G Q+Q
Sbjct: 419 EHVTIVKSRYLVALCLRYFREKTMIFTRYRSTTHRLNLLFNAVG---LPSVELQGNQQQE 475
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
R +L+ F G+ L S+D +RG+D++ V V+N+D P + YIHR GRTAR G+
Sbjct: 476 ERFLSLEKFTSGEASYLFSTDVASRGLDIKNVCTVINFDLPPTLTAYIHRVGRTARIGES 535
Query: 388 GRCFTLL 394
G +L+
Sbjct: 536 GTAVSLV 542
>gi|89093208|ref|ZP_01166158.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89082504|gb|EAR61726.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
Length = 497
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 179/400 (44%), Gaps = 71/400 (17%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--- 57
IS L F + ETI L +D+ + TG+GKT ++ L I+ L + +
Sbjct: 68 AISDLKFEYCTGIQAETIPAALAGKDIIGKAQTGTGKTAAFLLGIITDLIDYPLEEKPRL 127
Query: 58 ---RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
RALVV PTR+LALQ+ + +A L V VG + +L K+P
Sbjct: 128 GEPRALVVAPTRELALQIAEDAKGLAKYTDLHVVSLVGGMDYEKQRQKLKKKP------- 180
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
VDILVATPGRL+D +N + L ++ LV+DE DR+L ++P
Sbjct: 181 -------------VDILVATPGRLIDFVN-RKDVDLWNVEVLVLDEADRMLS---MGFIP 223
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
V + R+ + +D T L SA F D + L A +
Sbjct: 224 DVRTIVRN-TPRKGADRQTLLYSAT--------------FTDDILNLAEQWTLDAVKIEI 268
Query: 235 PNKLAQLD-LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
++ D + ++L +GE +Y+L L +Y + EK IVF
Sbjct: 269 APEIKTTDNVTQTVYLVSGEEKYRL---LRNY----------------MDKDHAEKVIVF 309
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
+ + T RL L G I+ SG Q R +TL+ FR GKIQVLV++D RG
Sbjct: 310 GNRRDETRRLADRLCKDG---IRAALMSGEIPQQKRVRTLEDFRSGKIQVLVATDVAGRG 366
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CF 391
+ ++GV +V NY P Y+HR GRT RAG G CF
Sbjct: 367 IHIDGVTHVFNYQLPEDPDDYVHRIGRTGRAGATGASICF 406
>gi|270010898|gb|EFA07346.1| hypothetical protein TcasGA2_TC015943 [Tribolium castaneum]
Length = 599
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 195/423 (46%), Gaps = 58/423 (13%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-------LRALVVLPTRDLALQVKD 74
L RD+ + TGSGKTL++ LPIV + N + L ALV+ PTR+LA+QV+D
Sbjct: 135 LGRRDIVGAAETGSGKTLAFGLPIVAGILNEKSKVVGNSDKKLYALVLTPTRELAVQVRD 194
Query: 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134
AI +++ + +G + + L KRP +I+VAT
Sbjct: 195 HLKAIVKFTDINIAVVLGGMAAVKQERILSKRP---------------------EIVVAT 233
Query: 135 PGRLMDHINATRGFTLEHLC------YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
PGRL + I EHL YL +DETDR+L + + L +L+ D + R
Sbjct: 234 PGRLWELIQQGN----EHLSQINDIRYLAIDETDRMLEKGHFEELHNILERLNLD-KTRA 288
Query: 189 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD--PNKLAQLDLHHP 246
F+ SA +L D P R K +S Q + L + +P
Sbjct: 289 KQRQNFVFSATLTL-----------VHDLPKYRFNKSKVSKMTPQQKLSRIMTDLGIKNP 337
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ + P L ++ C + K Y+ LQ + ++F +S+ RL L
Sbjct: 338 KIVDISQG-GNTPATLTESRISCGIEEKDYYVYYFLQK-HPGRTLIFCNSIGCVRRLANL 395
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G + + S QRQ R K L+ FR+ + +LV++D RG+D+ + +V++Y
Sbjct: 396 LGILGCRPLPL-HASMQQRQ--RLKNLERFRDDEHGILVATDVAARGLDIPKIEHVLHYQ 452
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD-NDSCPIHSIPSSLIE 425
P ++Y+HR+GRTARA Q G L+ E++ + K+ + + ++ PI + ++
Sbjct: 453 TPRTSESYVHRSGRTARATQQGLTVVLMEPSEIQNYIKICKTLNRSEDLPIFPVQEEYLK 512
Query: 426 SLR 428
+++
Sbjct: 513 AVK 515
>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
Length = 420
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 189/420 (45%), Gaps = 97/420 (23%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLALQVKDVFAAI 79
L RD+C + TG+GKT S+ LP++ L RA R R L++ PTR+LA QV + F
Sbjct: 37 LERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKY 96
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
L+V L +G G+ ++ +D ++L+ D+L+ TPGRL+
Sbjct: 97 GKNHRLNVALLIG-------------------GVSFEDQD--RKLERGADVLICTPGRLL 135
Query: 140 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 199
DH + + + LV+DE DR+L F+P
Sbjct: 136 DHFERGK-LLMSGVEILVIDEADRMLDMG-------------------------FIPD-- 167
Query: 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 259
+ER K P+ R + SAT+ + KLA L +P
Sbjct: 168 ----------IERIAKLIPFTRQT-LFFSATMPPEIQKLADRFLQNP------------- 203
Query: 260 ERLESYKLICESKLKPLYLVA--------------LLQSLGEEK-CIVFTSSVESTHRLC 304
ER+E K +K VA L+++ GE K I+F + + L
Sbjct: 204 ERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQGELKNAIIFCNRKKDVADLF 263
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L G + G Q R+ L++FR+G +Q+LV+SD RG+D+ V++V N
Sbjct: 264 RSLERHG---FSVGALHGDMDQRSRTMMLQSFRDGNLQLLVASDVAARGLDIPDVSHVFN 320
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL-QKADNDSCPIHSIP 420
+D P + + Y+HR GRT RAG+ G FTL+ K + K +KL+ +K + S ++S+P
Sbjct: 321 FDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEKLIGEKVEWLSGDVNSLP 380
>gi|440292099|gb|ELP85341.1| ATP-dependent RNA helicase HAS1, putative [Entamoeba invadens IP1]
Length = 566
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 177/400 (44%), Gaps = 69/400 (17%)
Query: 15 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLA 69
QE P L RD+ + TGSGKTL+Y +P++ L N+ R A+++ PTR+LA
Sbjct: 133 QERTAPLLLTGRDVLAKARTGSGKTLAYLVPVLDLL-NKIKFTSRNGTGAIIISPTRELA 191
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 129
LQ+ +V + S L +G + + LE G C
Sbjct: 192 LQIYEVLEKLMQNSERSKALLIGGNPKKKD------EEVLENGAC--------------- 230
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
++VATPGRL+DH++ TR F ++L LV+DE DR+L ++ + +L NR
Sbjct: 231 VVVATPGRLLDHLSNTRCFLFKNLKCLVIDEADRILEAGFEDEMRQIL--------NRL- 281
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
P R M+ SAT T +A L L P+F+
Sbjct: 282 ----------------------------PKNRQT-MLFSATQTDKVEDMANLSLKDPVFV 312
Query: 250 TTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
E+ +L+ ++ ESK + L L+ +K IVF SS + LLN
Sbjct: 313 NVEESSTTATSSKLQQGYVLVESKDRFRLLYTFLRKYKGKKMIVFMSSCNAVKFYSNLLN 372
Query: 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 368
+ + + G +Q R+K + F + K +L+++D RG+D+ V+ ++ D P
Sbjct: 373 Y---IDTPVLSLHGQLKQDKRTKVFEKFCKTKNCILLTTDVAARGLDIPEVDWIIQMDLP 429
Query: 369 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
YIHR GRTARA G+ L E+ K + +K
Sbjct: 430 DGPTEYIHRVGRTARADTEGKAVMFLQPTEIAMLKYMKEK 469
>gi|239613976|gb|EEQ90963.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ER-3]
Length = 945
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 182/400 (45%), Gaps = 39/400 (9%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 65
F V + ++TI L ++D+ + TGSGKT ++ +P+++ L N + + RAL++ P+
Sbjct: 106 FSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEKLKNHSAKFGSRALILSPS 165
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ V + L L VG S+ ++ + P
Sbjct: 166 RELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGNP------------------ 207
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DI++ATPGR + H+ L + Y+V DE DRL + A L +L S +
Sbjct: 208 ---DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSRQ 263
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLA 239
A+ LP SL R G++ + K P L + ++ L
Sbjct: 264 TLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISPDLQNAFFTVKSSEKEGALL 318
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L LH + + TGET + E+ K + K + +S E I+FT++
Sbjct: 319 HL-LHEVIKIPTGETEAHKRAKEEA-KNPKKRKRSEFASNSHKESPTEHSTIIFTATKHH 376
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L ++L G + G Q+ R ++ FR G +LV +D RG+D+ +
Sbjct: 377 VDYLVSILRISG---FAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPIL 433
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 434 SNVINYDFPSQAKIFVHRVGRTARAGKTGWSYSLIRESDA 473
>gi|225680138|gb|EEH18422.1| ATP-dependent RNA helicase dbp10 [Paracoccidioides brasiliensis
Pb03]
Length = 934
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 184/402 (45%), Gaps = 43/402 (10%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 65
F V + ++TI L ++D+ + TGSGKT ++ +P+++ L + + + RAL++ P+
Sbjct: 102 FSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGARALIMSPS 161
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ V + L L VG S+ ++ + P
Sbjct: 162 RELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGNP------------------ 203
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DI++ATPGR + H+ L + Y+V DE DRL + A L +L S +
Sbjct: 204 ---DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEILHGLPSSRQ 259
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLA 239
A+ LP SL R G++ + K P L S ++ L
Sbjct: 260 TLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISPDLQNGFFSIKSSEKEGALL 314
Query: 240 QLDLHHPLFLTTGETRY--KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
L LH + + TGET + E L + K + K L + +S E I+FT++
Sbjct: 315 HL-LHDIIKIPTGETEAGKRTKEELHNPK---KRKRSDTVLKSHKESPTEHSTIIFTATK 370
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
L ++L G + G Q+ R ++ FR G +LV +D RG+D+
Sbjct: 371 HHVDYLTSVLRQSG---FAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIP 427
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 428 ILSNVINYDFPSQSKIFVHRVGRTARAGRTGWSYSLIRESDA 469
>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
Length = 428
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 185/405 (45%), Gaps = 69/405 (17%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTR 66
P+Q A+ I L RD+ + TG+GKT ++ +PI++ L + R +AL++ PTR
Sbjct: 29 PIQAAI----IPLALEGRDVLGQARTGTGKTAAFGIPIIERLEHGPNSRNPQALILTPTR 84
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA+QV+D A + ++V G + + +++L+
Sbjct: 85 ELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQ---------------------MEKLKR 123
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
A I+V TPGR++D + R LE L +V+DE DR+L + R D E
Sbjct: 124 APHIVVGTPGRVID-LMTRRALQLEMLRTVVLDEADRMLDIGF-----------RPDIE- 170
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
K +RRC ER ++LSAT+ KLAQ + +P
Sbjct: 171 ----------------KILRRCPEERQ----------TLLLSATVPPTIEKLAQRYMRNP 204
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ T E +E + K LV LL+ +K IVF + T R+
Sbjct: 205 EKVDFSPTNISA-ETIEQRYFTVDHSKKFDMLVELLKREQPQKAIVFCRTKRGTERITQR 263
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L+ +L + G +Q R++ L F+ K +VLV++D + RG+D+ V++++NYD
Sbjct: 264 LSKKTKL---VHCIHGDMQQGARNRALSDFKASKFRVLVATDVVGRGIDISDVSHIINYD 320
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
P + Y+HR GRT R G+ G +T + +E ++ + D
Sbjct: 321 IPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRIEVRIDK 365
>gi|417104064|ref|ZP_11961294.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
Length = 499
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 182/416 (43%), Gaps = 97/416 (23%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G S+ P+Q I L RD+C + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYSTPTPIQAGA----IPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L+V L +G G+ ++ +D
Sbjct: 77 LILEPTRELAAQVAENFEKYGKNHRLNVALLIG-------------------GVSFEDQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++L+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHFERGK-LLMSGVEILVIDEADRMLDMG----------- 163
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
F+P +ER K P+ R + SAT+ + KLA
Sbjct: 164 --------------FIPD------------IERIAKLIPFTRQT-LFFSATMPPEIQKLA 196
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA--------------LLQSL 285
L +P ER+E K +K VA L+++
Sbjct: 197 DRFLQNP-------------ERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 243
Query: 286 GEEK-CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
GE K I+F + + L L G + G Q R+ L+ FR+G +Q+L
Sbjct: 244 GELKNAIIFCNRKKDVADLFRSLERHG---FSVGALHGDMDQRSRTTMLQNFRDGNLQLL 300
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
V+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G FTL+ K + K
Sbjct: 301 VASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTK 356
>gi|390341643|ref|XP_784918.3| PREDICTED: probable ATP-dependent RNA helicase DDX31-like
[Strongylocentrotus purpuratus]
Length = 718
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 133/459 (28%), Positives = 201/459 (43%), Gaps = 65/459 (14%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALV 61
F V Q I L +D I S TG+GKTL+YA+P+VQ L + R AL+
Sbjct: 134 FSQMTTVQQRAIPTLLHGQDTLIKSQTGTGKTLAYAVPVVQQLQGLQPKVQRLHGPYALI 193
Query: 62 VLPTRDLALQ-VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++PTR+LA Q + + + P + G+ +G ++ K E G
Sbjct: 194 LVPTRELACQSFETLVKLVKPFHWIVPGVLMGG-----------EKKKSEKG-------- 234
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++ ++ILV+TPGRL+DHIN T T + ++++DE DRLL ++ + T+L
Sbjct: 235 --RIRKGINILVSTPGRLVDHINTTEALTFSRVRWVILDEADRLLDLGFEKDVTTILNAI 292
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD------ 234
NE + T L SA S R + KD + + K L L
Sbjct: 293 ---NEQCQNQKQTVLVSATLSEGVKRLANIT--LKDPVFIDVAKHQLDKALPPAPWSASS 347
Query: 235 --------PNKL-AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL--- 282
P K +Q + + +PERL+ I SKL+ + L AL+
Sbjct: 348 SSTEEKLRPAKTGSQTEETGEGETGEDAEMFSVPERLKQQFAIVPSKLRLVALTALVAGG 407
Query: 283 -QSLGEEKCIVFTSSVESTH---------RLCTLLNHFGELR----IKIKEYSGLQRQSV 328
+S K +VF SS ES + C++L G + + G Q+
Sbjct: 408 FKSPSGCKMLVFLSSCESVDFHYTLFQACKGCSILKEDGTASKREGMPLFRLHGSMSQAE 467
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R K AF E + VL+ +D RG+D+ V +V Y+ P Y+HR GRTAR G+ G
Sbjct: 468 RIKMYHAFSEARKGVLLCTDVAARGLDLPKVKWIVQYNIPGSAADYVHRVGRTARIGKEG 527
Query: 389 RCFTLLHKDEVKRFKKL-LQKADNDSCPIHSIPSSLIES 426
+ L EV+ + L Q+ P+ I SSL+ S
Sbjct: 528 QALLFLAPSEVEYIRILEEQQIRIKEQPLDDILSSLMTS 566
>gi|418528845|ref|ZP_13094787.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
gi|371454106|gb|EHN67116.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
Length = 473
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 197/430 (45%), Gaps = 85/430 (19%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
MG S+ P+Q + I L +D+ + TG+GKT +++LP++Q L ++ A
Sbjct: 21 MGYESMTPIQA----QAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPA 76
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
+RALV+LPTR+LA QV A A L + G G+
Sbjct: 77 RHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFG-------------------GM 117
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
P+ + EL+ V++LVATPGRL+DHI A + L + Y+V+DE DR+L + L
Sbjct: 118 DMKPQTI--ELKKGVEVLVATPGRLLDHIEA-KNVVLNQVEYVVLDEADRMLDIGFLPDL 174
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L ++LP + +L + SAT +
Sbjct: 175 QRIL---------------SYLPKSRTTL-----------------------LFSATFSP 196
Query: 234 DPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 290
+ +LA L P+ + ET + +R YK+ + K + ++L+ +
Sbjct: 197 EIKRLAGSYLQDPVTIEVARPNETASTVEQRF--YKVTDDDKR--YAIRSVLKERDIRQA 252
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
+F++S RL L G ++ G + Q R K L+AF+ G++ +LV +D
Sbjct: 253 FIFSNSKLGCARLTRALERDG---LRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVA 309
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQ 407
RG+D++ V V NYD P + Y+HR GRT RAG G TL+ + V +KL++
Sbjct: 310 ARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLIK 369
Query: 408 KA-DNDSCPI 416
K D + P+
Sbjct: 370 KKIDVEPAPM 379
>gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
Length = 471
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 181/409 (44%), Gaps = 80/409 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G S P+Q Q I P L RD+ + TG+GKT S+ LP++ LS RA R R+
Sbjct: 21 GYESPTPIQ----QGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLSKGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F + L+ L +G G+ + +D
Sbjct: 77 LVLAPTRELAAQVAENFDTYTKHLKLTKALLIG-------------------GVSFKEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 118 AL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER F P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IERIFSLTPFTRQT-LFFSATMAPEIERI 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE--KC 290
L P + T ET + + + E K L L+ GE+
Sbjct: 196 TNTFLSGPARVEVARQATASETIEQGVVMFKGSRRDREGSEKRQVLRDLIDREGEDCRNA 255
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
I+F + L +G G QS R+KTL+ FR+G ++ LV+SD
Sbjct: 256 IIFCNRKTDVDVTAKSLKKYG---FDAAPIHGDLEQSQRTKTLEGFRDGSLRFLVASDVA 312
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDE 398
RG+D+ V++V N+D P++ + Y+HR GRT RAG+ G+ + + +DE
Sbjct: 313 ARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAIMICVPRDE 361
>gi|410075884|ref|XP_003955524.1| hypothetical protein KAFR_0B00910 [Kazachstania africana CBS 2517]
gi|372462107|emb|CCF56389.1| hypothetical protein KAFR_0B00910 [Kazachstania africana CBS 2517]
Length = 512
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 194/428 (45%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E+I + RD+ + G+GKT ++ +P +Q + + V ++A
Sbjct: 58 MGIFEAGFEKPSPIQEESIPVAITGRDILARAKNGTGKTAAFVIPTLQKIKPK-VNKIQA 116
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + G+S + G +++ D D
Sbjct: 117 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRD--------------------D 156
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+L+ L V +LV TPGR++D + + + L ++DE D++L ++ + +L
Sbjct: 157 ILR-LNDTVHVLVGTPGRVLD-LASRKIADLSECALFIMDEADKMLSRDFKTIIEQIL-- 212
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
FLP SL +P VK + L NK
Sbjct: 213 -------------IFLPKNHQSL-----------LFSATFPLTVKEFMVKHL----NKPY 244
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F + S
Sbjct: 245 EINLMEELTLKGITQYYAFVE--ERQKLHC--------LNTLFAKLQINQAIIFCN---S 291
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L +L +Q R+K FR+GK++ LV SD +TRG+D++ V
Sbjct: 292 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 351
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +I
Sbjct: 352 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAI 408
Query: 420 PSSLIESL 427
P+++ +SL
Sbjct: 409 PATIDKSL 416
>gi|294868682|ref|XP_002765642.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239865721|gb|EEQ98359.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 367
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 157/350 (44%), Gaps = 63/350 (18%)
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
A V+ PTR+L +Q F + ++ L+ VG + + L K+P
Sbjct: 32 ACVLAPTRELCVQTGQQFEGLGASINLTTATIVGGLDMVTQAMSLSKKPH---------- 81
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
I+VA+PGRL+DH+ T+GF L+ + +LV+DE DRLL ++ L ++Q
Sbjct: 82 -----------IIVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQ 130
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
D + TFL SAT+T ++L
Sbjct: 131 SCPRDRQ-------TFL-------------------------------FSATMTNKVSQL 152
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+ L P+ ++ + + L + K K YL ALL ++F +
Sbjct: 153 QRASLTRPVKCEVAR-KFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCL 211
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
+ R+ T L H G + + G Q+ R L FR G +LV++D RG+D+
Sbjct: 212 NAQRMATTLRHLGHNCVCLH---GKMTQTHRLGALNQFRAGTRSILVATDVAARGLDIPS 268
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
V+ V+N+D P + YIHR GRTARAG+ GR TL+ + +++ F+++ K
Sbjct: 269 VDVVINFDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRIENK 318
>gi|226291932|gb|EEH47360.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
Pb18]
Length = 895
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 185/402 (46%), Gaps = 43/402 (10%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 65
F V + ++TI L ++D+ + TGSGKT ++ +P+++ L + + + RAL++ P+
Sbjct: 102 FSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGARALIMSPS 161
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ V + L L VG S+ ++ + P
Sbjct: 162 RELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGNP------------------ 203
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DI++ATPGR + H+ L + Y+V DE DRL + A L +L + S +
Sbjct: 204 ---DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEILHVLPSSRQ 259
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLA 239
A+ LP SL R G++ + K P L S ++ L
Sbjct: 260 TLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISPDLQNGFFSIKSSEKEGALL 314
Query: 240 QLDLHHPLFLTTGETRY--KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
L LH + + TGET + E L + K + K L + +S E I+FT++
Sbjct: 315 HL-LHDIIKIPTGETEAGKRTKEELHNPK---KRKRSDTVLKSHKESPTEHSTIIFTATK 370
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
L ++L G + G Q+ R ++ FR G +LV +D RG+D+
Sbjct: 371 HHVDYLTSVLRQSG---FAVSYAYGSLDQTARKIEVQNFRCGITHILVVTDVAARGIDIP 427
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 428 ILSNVINYDFPSQSKIFVHRVGRTARAGRTGWSYSLIRESDA 469
>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 428
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 190/421 (45%), Gaps = 75/421 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD + TGSGKT+++ P++ S LV+ PTR+LA+Q+ D FAA+ V
Sbjct: 40 RDCIGGAKTGSGKTIAFGAPMLAKWSQDPSGIF-GLVLTPTRELAMQIADQFAALGATVN 98
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL----MD 140
L V L +G S+ D+++ + + P ++ATPGRL M+
Sbjct: 99 LKVRLIIGGESMTDQVAMIKENPHF---------------------IIATPGRLAHIIME 137
Query: 141 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 200
+ + RG L+ + YLV+DE DRLL +++ L T + + N+ + F +
Sbjct: 138 NEDECRG--LKRVKYLVLDEADRLLTDSFTDHLQTCFEALPNSNKRQ---TLLFTATVTD 192
Query: 201 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET--RYKL 258
S+ R KD+P P K P+FL + K+
Sbjct: 193 SV---------RALKDRPVA--------------PGK-------QPVFLHELDNVDTVKI 222
Query: 259 PERLESYKLICESKLKPLYLVALL--QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316
P L ++ +K L +L + E IVF + E+ L LL H L +
Sbjct: 223 PSTLRLLYVLAPVVVKESMLHNILTNEDYKESTAIVFVNRSETAEILRRLLRH---LEVT 279
Query: 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 376
QS R+ +L FR G +VLV++D +RG+D+ V V+N+D P Y+H
Sbjct: 280 TTSLHSEMPQSERTNSLHRFRAGAARVLVATDLASRGLDIPSVELVINFDIPRDPDDYVH 339
Query: 377 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS----LIESLRPVYK 432
R GRTARAG+ G +++ +++ R +L D + +P S + +SL+ V K
Sbjct: 340 RVGRTARAGRKGDAISMVTPNDLSR---ILAIEDRVGVKMEELPLSDNKVIKQSLKAVSK 396
Query: 433 S 433
+
Sbjct: 397 A 397
>gi|297826827|ref|XP_002881296.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
lyrata]
gi|297327135|gb|EFH57555.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
lyrata]
Length = 731
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 184/407 (45%), Gaps = 60/407 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 330 GYKKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENET 385
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q+++ A +G V VG SI E G+
Sbjct: 386 EGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE------------EQGL- 432
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
++ +I++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 433 --------KITQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVA 483
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL S N K I R + SAT+
Sbjct: 484 GVLDAMPSSN------LKPENEEEELDEKKIYRT---------------TYMFSATMPPG 522
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL LG++ IVF
Sbjct: 523 VERLARKYLRNPVVVTIG-TAGKTTDLISQHVIMMKESEKFFRLQKLLDELGDKTAIVFV 581
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D + RG+
Sbjct: 582 NTKKNCDSIAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGI 638
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEV 399
D+ V +V+NYD P +I+ Y HR GRT RAG+ G F LH EV
Sbjct: 639 DIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV 685
>gi|412992467|emb|CCO18447.1| predicted protein [Bathycoccus prasinos]
Length = 818
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 114/426 (26%), Positives = 197/426 (46%), Gaps = 52/426 (12%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-------QTLSNRA 53
+G + P+Q+A +I GL +RD+ + TGSGKT ++ +P++ + A
Sbjct: 400 VGYTKPSPIQMA----SIPIGLLKRDVIGVAETGSGKTCAFVVPMLAHIMGLPKMTDEVA 455
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
ALV+ PTR+LA Q+++ A +G V VG SI D+ G+
Sbjct: 456 ADGPYALVMAPTRELAQQIEEETLKFAHFLGYRVACVVGGQSIEDQ------------GV 503
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETDRLLREAYQAW 172
+L+ V+I+V TPGR++D I + +T+ + C Y+V+DE DR++ ++
Sbjct: 504 ---------QLRKGVEIVVGTPGRIIDVIE--KRYTVLNQCNYIVLDEADRMIDMGFEPQ 552
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+ V++ S N A A + ++I R + SAT+
Sbjct: 553 VTQVMEAMPSSNLKPIDMAEELDNKAIDNKQSIETSARYR----------TTYMFSATMP 602
Query: 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
+LA+ L +P +T G + K + ++ + K L +L + + IV
Sbjct: 603 PSVERLARTYLRNPAVVTIG-SAGKTSDLIKQTVIWVNRSEKERTLEQILSQHTQTQAIV 661
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F ++ T + G G + Q R L F+ G +LV++D R
Sbjct: 662 FVNTKRGVDSCVTACHSMG---YSCGSIHGGKGQDAREAALTGFKRGDFDILVATDVAGR 718
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL---HKDEVKRFKKLLQKA 409
G+DV+G++ VVNY+ PA I+ Y HR GRT RAG+ G + + +D + ++LL ++
Sbjct: 719 GIDVKGIDLVVNYELPASIENYTHRIGRTGRAGRKGTAVSFITSEDQDIMYDLRQLLIES 778
Query: 410 DNDSCP 415
+N+ P
Sbjct: 779 NNEVPP 784
>gi|443293943|ref|ZP_21033037.1| Putative ATP-dependent RNA helicase [Micromonospora lupini str.
Lupac 08]
gi|385883801|emb|CCH21188.1| Putative ATP-dependent RNA helicase [Micromonospora lupini str.
Lupac 08]
Length = 437
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 185/411 (45%), Gaps = 74/411 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--A 59
GI FP+Q A ++ L RD+ TGSGKTL++ LP++ + R R R A
Sbjct: 25 GIIEPFPIQSATLPDS----LAGRDVLGRGRTGSGKTLAFGLPLLSRTAGRKARPGRPLA 80
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV++PTR+LA QV A A AVGL VG S+ + L
Sbjct: 81 LVLVPTRELAQQVTTALAPYARAVGLRCATVVGGLSLQRQADAL---------------- 124
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++ +++VATPGRL D IN RG L+ + V+DE D++ A +LP V +
Sbjct: 125 -----RAGAEVVVATPGRLNDLIN--RGDARLDQVEITVLDEADQM---ADMGFLPQVTK 174
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
L ++ P+ +M+ SATL ++L
Sbjct: 175 LL-----------------------------------EQVAPQGQRMLFSATLDGGVDRL 199
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+ L P+ + + + + L ++ KP L + E + I+F +
Sbjct: 200 VRRFLSSPVTHSVDPGTATVTA-MTHHVLHVDALDKPDALTRIAAR--EGRTILFMGTKH 256
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
RL L G ++ G + Q R++ L+ FR G++ LV++D RG+ V+G
Sbjct: 257 RADRLARQLLSKG---VRAAALHGGKSQPQRTRILEQFRNGQVTALVATDVAARGIHVDG 313
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
++ VVN D P K Y+HR GRTARAG+ G TL+ ++ + +L+ A
Sbjct: 314 LDMVVNVDPPTEAKDYLHRGGRTARAGESGSVVTLVLPEQRRDVSRLMATA 364
>gi|411010727|ref|ZP_11387056.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 415
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 171/385 (44%), Gaps = 68/385 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTL----SNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80
RDL + TG+GKT ++ LP+++ L ++ A R +RALV++PTR+LA+QV + A
Sbjct: 42 RDLMAGAQTGTGKTAAFVLPLLEQLLQHPTSDAPRPIRALVLVPTRELAVQVHESVTRYA 101
Query: 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 140
L+ L G SIA ++ + L++ VD+L+ATPGRL+D
Sbjct: 102 KGTDLTSTLVYGGVSIAAQV---------------------EALKAGVDLLIATPGRLLD 140
Query: 141 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 200
H+ +L L +LV DE DR+L + + +L+ +D + A T + F
Sbjct: 141 HLRQG-ALSLAALRHLVFDEADRMLDMGFMDEIKALLKQIPADRQTLLFSA-TCDDNLFA 198
Query: 201 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 260
K + R P L+++ P ++ ++ G+ + L E
Sbjct: 199 LSKVLLRD-----------PALIEVA--------PRNTTAAEVEQRVYTVDGDRKLALVE 239
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+ K G ++F+ + + +L G+ I +
Sbjct: 240 HMLKVK-------------------GWAPALIFSRTRQGADKLA---QQLGKTGINALAF 277
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q R K L FR G +Q LV++D RG+D+ +N V+N + P + Y+HR GR
Sbjct: 278 HGDLSQGAREKVLLEFRAGTLQALVATDVAARGLDITDLNYVINMEFPFVAEDYVHRIGR 337
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKL 405
T RAG G TL ++ +K+
Sbjct: 338 TGRAGNKGLAITLFSPEDAPLLEKV 362
>gi|255719332|ref|XP_002555946.1| KLTH0H01562p [Lachancea thermotolerans]
gi|238941912|emb|CAR30084.1| KLTH0H01562p [Lachancea thermotolerans CBS 6340]
Length = 491
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 193/428 (45%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E I + RD+ + G+GKT ++ +P ++ + + V ++A
Sbjct: 42 MGIFEAGFEKPSPIQEEAIPIAIAGRDVLARAKNGTGKTAAFVVPTLEKVKPK-VNKIQA 100
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + G+S + G +++ D+I L
Sbjct: 101 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL---------------- 144
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
V ILV TPGR++D + + + L V+DE D++L ++A + +L
Sbjct: 145 -----NEPVHILVGTPGRVLD-LASRKVADLSECPLFVMDEADKMLSRDFKAIIEQIL-- 196
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
TFLP SL +P VK + L +K
Sbjct: 197 -------------TFLPPVHQSL-----------LFSATFPLTVKEFMVKHL----HKPY 228
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 229 EINLMDELTLKGITQYYAFVE--ERQKLHC--------LNTLFSKLQINQAIIFCNS--- 275
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L +L +QS R+K FR+GK++ LV SD +TRG+D++ V
Sbjct: 276 TNRVELLAKKITDLGYSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 335
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +I
Sbjct: 336 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAI 392
Query: 420 PSSLIESL 427
P+ + +SL
Sbjct: 393 PAQIDKSL 400
>gi|254675193|ref|NP_001028466.2| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Mus musculus]
gi|127799123|gb|AAH66017.2| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Mus musculus]
gi|148676452|gb|EDL08399.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Mus musculus]
gi|161899636|gb|AAI32352.2| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Mus musculus]
Length = 687
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 124/447 (27%), Positives = 195/447 (43%), Gaps = 103/447 (23%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR- 58
+ +SS+ VQ +++I P L E RD + S TGSGKTL+Y +P+VQ+L + R
Sbjct: 122 LKMSSMTSVQ----KQSI-PVLLEGRDALVRSQTGSGKTLAYCVPVVQSLQALTSKIQRS 176
Query: 59 ----ALVVLPTRDLALQVKD-VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
ALV++PTR+LALQ D V + P + G+ +G E + L K
Sbjct: 177 DGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRK-------- 228
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
++IL++TPGRL+DHI +T+ + +L+VDE DR+L ++ +
Sbjct: 229 -------------GINILISTPGRLVDHIKSTKNLHFNRIRWLIVDEADRILDLGFEKDI 275
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L ++ + R + ++LSATLT+
Sbjct: 276 TVILNAVNAECQKRQN-----------------------------------VLLSATLTE 300
Query: 234 DPNKLAQLDLHHPLFLTTGE----------------TRYKLPERLESYKLICESKLKPLY 277
+L + LH+P+ ++ + + +PE L+ + ++ SKL+ +
Sbjct: 301 GVTRLVDISLHNPVSISVLDKNCNQPNPKEVASIQLNSFAIPESLDQHVVLVPSKLRLVC 360
Query: 278 LVA-LLQSL---GEEKCIVFTSSVESTH-----RLCTLLNHFG----------ELRIKIK 318
L A +LQ +K IVF SS E L TLL H G +K
Sbjct: 361 LAAFILQKCKFEKNQKMIVFFSSCELVEFHYSLFLHTLLCHSGTPTSEHLPSASWPLKFL 420
Query: 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 378
G Q R+ F + VL+ +D +RG+D+ V +V Y P+ YIHR
Sbjct: 421 RLHGNMEQEERTSVFHEFSHSETGVLLCTDVASRGLDLPQVTWIVQYSAPSSPAEYIHRI 480
Query: 379 GRTARAGQLGRCFTLLHKDEVKRFKKL 405
GRTAR G G +L E + L
Sbjct: 481 GRTARIGCHGSSLLILAPSEAEYVNSL 507
>gi|406573611|ref|ZP_11049359.1| DEAD/DEAH box helicase [Janibacter hoylei PVAS-1]
gi|404556981|gb|EKA62435.1| DEAD/DEAH box helicase [Janibacter hoylei PVAS-1]
Length = 554
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 120/436 (27%), Positives = 194/436 (44%), Gaps = 75/436 (17%)
Query: 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--RAL 60
I++ F +Q A I L +D+ TGSGKTL++ LP++ L+ R R L
Sbjct: 140 ITTPFAIQAAA----IPDALAGKDVLGRGQTGSGKTLAFGLPMLARLAGGRARSRKPRGL 195
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V++PTR+LA+QV D + GL + L G S + + L K
Sbjct: 196 VLVPTRELAMQVSDSLEPLVHVSGLRIKLVAGGLSYTGQTAALDK--------------- 240
Query: 121 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
VD+L+ATPGRL+D ++ RG TL+ + V+DE D + A +LP+V ++
Sbjct: 241 ------GVDVLIATPGRLVDLLD--RGALTLDAVEVAVLDEADHM---ADMGFLPSVTRI 289
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
D+ P +++ SATL + L
Sbjct: 290 L-----------------------------------DECAPGGQRLLFSATLDRGVGDLV 314
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+ + P+ +T E + +E + ++ E +K + G + +VF +
Sbjct: 315 EAYMSDPVTHSTDEAAASV-STMEHHLMLIEPNIKKQITARIASRPG--RTVVFARTKLG 371
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
R+ L G + G QS R+KT+ AFR G + VLV++D RG+ V+ V
Sbjct: 372 CERIAGELREAG---VAAAPLHGGLSQSQRNKTIGAFRTGTLPVLVATDVAARGIHVDDV 428
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH-S 418
+ V+ D P K Y+HRAGRTARAG+ G TL+ + K ++ +A ++ P +
Sbjct: 429 SLVMQVDPPGDHKDYLHRAGRTARAGEKGSVVTLVLPHQRKEVTRMADQAGLEARPTRTT 488
Query: 419 IPSSLIESLRPVYKSG 434
+ ++ L V SG
Sbjct: 489 LDDEVLTDLGAVEPSG 504
>gi|392570219|gb|EIW63392.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 956
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 182/392 (46%), Gaps = 52/392 (13%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPA 82
RDL + TGSGK+L+Y +P+VQ L R RAL++LP R+LALQ+ V +A
Sbjct: 142 RDLVGMARTGSGKSLAYMVPLVQRLGGRHSGTFGARALILLPARELALQILKVGKELARG 201
Query: 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ---SAVDILVATPGRLM 139
G G+ + + K L G+ E + ++ + S D+++ATPGRL+
Sbjct: 202 WHAGEGDHAGEHK---DTEDGKKGQSLRWGLVVGGESLDEQFEMISSNPDVIIATPGRLL 258
Query: 140 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ---LTRSDNENRFSDASTFLP 196
H+ L+ + Y+V DE DRL +Q L +L LTR T L
Sbjct: 259 -HLIVEMNLDLKSIEYVVFDEADRLFEMGFQTALSEILHRLPLTRQ----------TLLF 307
Query: 197 SAF--GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN------KLAQLD------ 242
SA SL + G++ P+LV++ ++ D K A+ D
Sbjct: 308 SATLPKSLVEFAKAGLQN-------PKLVRLDAETKISSDLRMAFFSVKQAEKDACLLVL 360
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L + + G T ++ E E K ++K + +A Q+L VF ++
Sbjct: 361 LRDVIGVPYGSTVPEVDEASEHRKGKGKAKKYSEHAIAPHQTL------VFAATKHHVEY 414
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LL+ G + G Q+ RS+ + FR G+ +LV +D RG+D+ + NV
Sbjct: 415 LTNLLSTAG---YAVSHIYGTLDQTARSEQMDNFRRGRTSILVVTDVAARGIDIPVLENV 471
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
VNYD P+ + +IHR GRTARAG+ G + +
Sbjct: 472 VNYDFPSGARVFIHRVGRTARAGRQGWAWNFV 503
>gi|95007096|emb|CAJ20316.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii RH]
Length = 574
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 183/418 (43%), Gaps = 68/418 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P+QV T L +++C +PTGSGKTL Y P++Q + LV+LP R+
Sbjct: 157 PIQVLSLPHT----LRGKNVCGLAPTGSGKTLGYCWPLLQRIGRGDGHAFMGLVLLPARE 212
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA+QV D F +G+ V L +G + +E L + P
Sbjct: 213 LAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQCPH------------------- 253
Query: 128 VDILVATPGRLMDHINATRGFTLEHLC---YLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
I++ATPGR+ DH+ + L LV+DE DRLL + ++ L T+L + +
Sbjct: 254 --IVIATPGRMSDHVQNDPLRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTSS 311
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+ R T L SA S + ++R F D P ++ A T P
Sbjct: 312 QGR----QTLLFSATVSPALL---ALQRRFGDDAMP-----LVDAHPTDQP--------- 350
Query: 245 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG---EEKCIVFTSSVESTH 301
LP L + + ++++P+YL+ LL+ ++ IVF SV T
Sbjct: 351 ------------ALPN-LSHFYMFVPTRMQPIYLLYLLEHTSPFCSDRGIVFAGSVRQTQ 397
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
++CT L L+ L Q R L+ FR ++L+ +D RG+D+ V
Sbjct: 398 QICTALE---ILKQSATPLHSLMEQRKRVACLEKFRSETSRLLICTDVAGRGLDLPRVEF 454
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
V+N P + Y+HR GRTARAG+ G T + V+ ++ + P+ SI
Sbjct: 455 VINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPKSVRAVHRIEALINTQLQPLPSI 512
>gi|74147664|dbj|BAE38708.1| unnamed protein product [Mus musculus]
Length = 687
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 124/447 (27%), Positives = 195/447 (43%), Gaps = 103/447 (23%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR- 58
+ +SS+ VQ +++I P L E RD + S TGSGKTL+Y +P+VQ+L + R
Sbjct: 122 LKMSSMTSVQ----KQSI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQALTSKIQRS 176
Query: 59 ----ALVVLPTRDLALQVKD-VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
ALV++PTR+LALQ D V + P + G+ +G E + L K
Sbjct: 177 DGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRK-------- 228
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
++IL++TPGRL+DHI +T+ + +L+VDE DR+L ++ +
Sbjct: 229 -------------GINILISTPGRLVDHIKSTKNLHFNRIRWLIVDEADRILDLGFEKDI 275
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L ++ + R + ++LSATLT+
Sbjct: 276 TVILNAVNAECQKRQN-----------------------------------VLLSATLTE 300
Query: 234 DPNKLAQLDLHHPLFLTTGE----------------TRYKLPERLESYKLICESKLKPLY 277
+L + LH+P+ ++ + + +PE L+ + ++ SKL+ +
Sbjct: 301 GVTRLVDISLHNPVSISVLDKNCNQPNPKEVASIQLNSFAIPESLDQHVVLVPSKLRLVC 360
Query: 278 LVA-LLQSL---GEEKCIVFTSSVESTH-----RLCTLLNHFG----------ELRIKIK 318
L A +LQ +K IVF SS E L TLL H G +K
Sbjct: 361 LAAFILQKCKFEKNQKMIVFFSSCELVEFHYSLFLHTLLCHSGTPTSEHLPSASWPLKFL 420
Query: 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 378
G Q R+ F + VL+ +D +RG+D+ V +V Y P+ YIHR
Sbjct: 421 RLHGNMEQEERTSVFHEFSHSETGVLLCTDVASRGLDLPQVTWIVQYSAPSSPAEYIHRI 480
Query: 379 GRTARAGQLGRCFTLLHKDEVKRFKKL 405
GRTAR G G +L E + L
Sbjct: 481 GRTARIGCHGSSLLILAPSEAEYVNSL 507
>gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 422
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 181/406 (44%), Gaps = 73/406 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G + P+Q +TI L ++L + TG+GKT ++ LPI+Q L R +AL+
Sbjct: 20 GFTQPTPIQA----QTIPLALSGQNLIGLAQTGTGKTAAFVLPILQRLLQNRQRGTQALI 75
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
V PTR+LA Q+ D +A GL G G+ +P++
Sbjct: 76 VTPTRELAEQINDTIRVLAHGTGLRSAPIYG-------------------GVGMEPQE-- 114
Query: 122 QELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+ L++ V+I+VA PGRL+DH+ RG L+ + LV+DE DR+L +LP + ++
Sbjct: 115 RALRAGVEIVVACPGRLIDHLG--RGSARLDGVQMLVLDEADRML---DMGFLPAIQRI- 168
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
+L T R+ M+ SATL + +LA
Sbjct: 169 ------------------LSALPTRRQT----------------MLFSATLPAELQQLAA 194
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
H + G R P ++ + K L+ LL +VFT +
Sbjct: 195 TTAPHAKLVQIGLVR---PAHTITHAIYPVPPHRKTALLLDLLHKANSGSVLVFT---RT 248
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
HR LL + Q+ R L FR+G+ ++LV++D RG+DVE +
Sbjct: 249 KHRANRLLQQIAREGHSAAVLHSNKSQNQRQLALDGFRDGRFRILVATDIAARGLDVERI 308
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++V+NYD P YIHR GRT RA + G FTL+ ++ + +++
Sbjct: 309 SHVINYDIPDTPDAYIHRIGRTGRATRSGDAFTLVTPEDASQVRQI 354
>gi|154286470|ref|XP_001544030.1| hypothetical protein HCAG_01076 [Ajellomyces capsulatus NAm1]
gi|150407671|gb|EDN03212.1| hypothetical protein HCAG_01076 [Ajellomyces capsulatus NAm1]
Length = 721
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 174/400 (43%), Gaps = 70/400 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAP 81
RD+ + TGSGKTL++ +P+++ L + L ALV+ PTR+LA+Q+ +V I
Sbjct: 87 RDILGAAKTGSGKTLAFLVPLLELLYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGR 146
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G + +E QE ++ILV TPGR++ H
Sbjct: 147 HHTFSAGLVIGGKGLQEE----------------------QERLGKMNILVCTPGRMLQH 184
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T F H+ LV+DE DR++ +Q+ + ++ LP
Sbjct: 185 MDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIID---------------HLPK---- 225
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPE 260
ER M+ SAT T+ + LA+L L P +++ ET P
Sbjct: 226 ---------ER----------QTMLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPA 266
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+L+ +I K L + ++S + K IVF SS + + H I +
Sbjct: 267 KLQQNYIITPLPEKLDTLWSFIRSSLKSKIIVFFSSGKQVRFVYESFRHM-RPGIPLLHL 325
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q+Q R K F K L ++D RG+D V+ V+ D P TYIHRAGR
Sbjct: 326 HGRQKQGARVDITKKFSAAKYSCLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGR 385
Query: 381 TARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHSI 419
TAR + GR L +E K+L QK PI I
Sbjct: 386 TARYERNGRAVLFLEPSEEAGMLKRLEQK----KIPIEKI 421
>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
Length = 484
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 185/409 (45%), Gaps = 80/409 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G + P+Q I P L RD+ + TG+GKT ++ LP++ L RA R R+
Sbjct: 21 GYDTPTPIQAGA----IAPALEGRDVLGIAQTGTGKTAAFTLPMITLLGRGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F A A LS L +G +S D+ ++I +
Sbjct: 77 LVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQ-DKIIDK------------- 122
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
VD+L+ATPGRL+DH+ RG L + +VVDE DR+L
Sbjct: 123 -------GVDVLIATPGRLLDHLE--RGKLILTDVKIMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +E FK P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IEEIFKRTPFTRQT-LFFSATMAPEIERI 195
Query: 239 AQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKL---KPLYLVALLQSLGEE--KC 290
L +P + T + + + +K + K K L L+ + GE
Sbjct: 196 TNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEKRELLRKLIDAEGEACTNA 255
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
I+F + + LN +G I G QS R+KTL FR+ ++++LV+SD
Sbjct: 256 IIFCNRKSDVDIVAKSLNKYGYQAAPI---HGDLDQSHRTKTLDKFRDNELRILVASDVA 312
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDE 398
RG+D+ V +V N+D P++ + Y+HR GRT RAG+ G + + +DE
Sbjct: 313 ARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGTAIMICVPRDE 361
>gi|120554694|ref|YP_959045.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|120324543|gb|ABM18858.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
Length = 423
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 178/396 (44%), Gaps = 74/396 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
+G P+Q ET+ L DL + TG+GKT ++ + +Q+L R
Sbjct: 29 IGFEYCTPIQA----ETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLETPIDEKERF 84
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
R L + PTR+LA+Q+ + G +V VG G+
Sbjct: 85 ASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVG-------------------GM 125
Query: 114 CYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
YD + ++LQ+ VDILVATPGRL+D + + F L+ L L++DE DR+L +
Sbjct: 126 NYDKQ--REQLQNEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEADRMLDMGF--- 179
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+P V ++ IR+C P ++ SAT
Sbjct: 180 IPDVKRI-------------------------IRKC--------TPKDERQTLLFSATFN 206
Query: 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
QD LA + + F+ E K ER+E + K LV L+ EK IV
Sbjct: 207 QDVLNLASMWTRNAEFVEI-EPEQKTAERVEQTVFLVSDNEKLPVLVNYLKRPEVEKAIV 265
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F + + L L + G +K+ SG Q+ R KTL F++G+IQVLV++D R
Sbjct: 266 FANRRDQCRDLEEDLKNQG---VKVALMSGEIAQNKRLKTLDQFKKGQIQVLVATDVAGR 322
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
G+ V GV +V NY+ P + Y+HR GRT RAG+ G
Sbjct: 323 GIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTG 358
>gi|425734341|ref|ZP_18852660.1| superfamily II DNA and RNA helicase [Brevibacterium casei S18]
gi|425481608|gb|EKU48767.1| superfamily II DNA and RNA helicase [Brevibacterium casei S18]
Length = 546
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 187/415 (45%), Gaps = 78/415 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN------RAVR 55
G + FP+Q Q+T+G L RD+ TGSGKTL++++P+V L+ R R
Sbjct: 43 GKTEAFPIQ----QDTLGDTLAGRDVLGRGKTGSGKTLAFSIPMVARLAETQPARPRRGR 98
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
R L++ PTR+LA Q+ V +A A GL+ G +K+ + E
Sbjct: 99 PPRGLILAPTRELATQIAAVLDPLAQACGLTTTTIFGG----------VKQKRQETA--- 145
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
L + VDILVA PGRL D + +L+ + V+DE D + A +LP
Sbjct: 146 --------LAAGVDILVACPGRLEDLLQQDI-VSLDDVEITVLDEADHM---ADMGFLP- 192
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
GV R P + +M SATL D
Sbjct: 193 ---------------------------------GVTRLLAKTPV-KGQRMFFSATLDNDV 218
Query: 236 NKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+KL + LH+ + + + T + +++ E K + ++ +A G + I+FT
Sbjct: 219 DKLVRRFLHNQVLHSVDDPTSHVAAMTHHLFEVTAEDKSELVHRLA----SGSGRRILFT 274
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ RL LL G I + G QS R + L AF EG + VLV++D RG+
Sbjct: 275 RTKHRAKRLARLLTKQG---IPAVDMHGNLSQSARERNLAAFAEGGVNVLVATDVAARGV 331
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
V+ V VV+ D P K Y+HR+GRTARAG G T++ +E K LL+KA
Sbjct: 332 HVDAVELVVHVDPPTEHKAYLHRSGRTARAGSTGDVVTIMTPEERKDTLALLRKA 386
>gi|378826015|ref|YP_005188747.1| ATP-dependent RNA helicase [Sinorhizobium fredii HH103]
gi|365179067|emb|CCE95922.1| ATP-dependent RNA helicase [Sinorhizobium fredii HH103]
Length = 501
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 119/423 (28%), Positives = 189/423 (44%), Gaps = 76/423 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L RD+ + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYATPTPIQAGA----IPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L++ L +G G+ +D +D
Sbjct: 77 LILEPTRELAAQVAENFDKYGKNHKLNIALLIG-------------------GVSFDEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++L+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHFERGK-LLMSGVEILVIDEADRMLDMG----------- 163
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
F+P +ER K P+ R + SAT+ + KLA
Sbjct: 164 --------------FIPD------------IERIAKLIPFTRQT-LFFSATMPPEIQKLA 196
Query: 240 QLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK-CIVFTS 295
L +P + T + +R + + K L L+++ GE K I+F +
Sbjct: 197 DRFLQNPERVEVARPASTAITVTQRFVAAH--GKDYEKRAVLRDLIRAQGELKNAIIFCN 254
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ L L+ G + G Q R L F++G IQ+LV+SD RG+D
Sbjct: 255 RKKDVAELFRSLDRHG---FSVGALHGDMDQRSRMAMLANFKDGNIQLLVASDVAARGLD 311
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP 415
+ V++V N+D P + + Y+HR GRT RAG+ G FT++ K ++K F ++K +
Sbjct: 312 IPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDMK-FSDAIEKLIGQTVE 370
Query: 416 IHS 418
HS
Sbjct: 371 WHS 373
>gi|225558597|gb|EEH06881.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus G186AR]
Length = 810
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 174/400 (43%), Gaps = 70/400 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAP 81
RD+ + TGSGKTL++ +P+++ L + L ALV+ PTR+LA+Q+ +V I
Sbjct: 87 RDILGAAKTGSGKTLAFLVPLLELLYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGR 146
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G + +E QE ++ILV TPGR++ H
Sbjct: 147 HHTFSAGLVIGGKGLQEE----------------------QERLGKMNILVCTPGRMLQH 184
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T F H+ LV+DE DR++ +Q+ + ++ LP
Sbjct: 185 MDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIID---------------HLPK---- 225
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPE 260
ER M+ SAT T+ + LA+L L P +++ ET P
Sbjct: 226 ---------ER----------QTMLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPA 266
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+L+ +I K L + ++S + K IVF SS + + H I +
Sbjct: 267 KLQQNYIITPLPEKLDTLWSFIRSSLKSKIIVFFSSGKQVRFVYESFRHM-RPGIPLLHL 325
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q+Q R K F K L ++D RG+D V+ V+ D P TYIHRAGR
Sbjct: 326 HGRQKQGARVDITKKFSAAKYSCLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGR 385
Query: 381 TARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHSI 419
TAR + GR L +E K+L QK PI I
Sbjct: 386 TARYERNGRAVLFLEPSEEAGMLKRLEQK----KIPIEKI 421
>gi|387813947|ref|YP_005429430.1| ATP-dependent RNA helicase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381338960|emb|CCG95007.1| ATP-dependent RNA helicase [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 423
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 178/396 (44%), Gaps = 74/396 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
+G P+Q ET+ L DL + TG+GKT ++ + +Q+L R
Sbjct: 29 IGFEYCTPIQA----ETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLETPIDEKERF 84
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
R L + PTR+LA+Q+ + G +V VG G+
Sbjct: 85 ASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVG-------------------GM 125
Query: 114 CYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
YD + ++LQ+ VDILVATPGRL+D + + F L+ L L++DE DR+L +
Sbjct: 126 NYDKQ--REQLQNEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEADRMLDMGF--- 179
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+P V ++ IR+C P ++ SAT
Sbjct: 180 IPDVKRI-------------------------IRKC--------TPKDERQTLLFSATFN 206
Query: 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
QD LA + + F+ E K ER+E + K LV L+ EK IV
Sbjct: 207 QDVLNLASMWTRNAEFVEI-EPEQKTAERVEQTVFLVSDNEKLPVLVNYLKRPEVEKAIV 265
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F + + L L + G +K+ SG Q+ R KTL F++G+IQVLV++D R
Sbjct: 266 FANRRDQCRDLEEDLKNQG---VKVALMSGEIAQNKRLKTLDQFKKGQIQVLVATDVAGR 322
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
G+ V GV +V NY+ P + Y+HR GRT RAG+ G
Sbjct: 323 GIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTG 358
>gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417956619|ref|ZP_12599583.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342809459|gb|EGU44578.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 419
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 178/398 (44%), Gaps = 70/398 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL----SNRAVRC--LRAL 60
F + V + I L +D+ + TG+GKT ++ LPI+Q L + R ++ + AL
Sbjct: 23 FKLPTEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPIIQRLLESETTRDIQSNDVLAL 82
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V++PTR+LA QV D A + V A G +S+ +
Sbjct: 83 VLVPTRELAQQVFDNITLYAQDTIIKVVTAYGGTSMNVQT-------------------- 122
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+ L DIL+ATPGRL+DH+ + L YLV+DE DR+L + +P + ++
Sbjct: 123 -RNLDQGCDILIATPGRLLDHL-FCKNINLTKTQYLVLDEADRMLDMGF---MPDIKRI- 176
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
++RC ER M SAT + +A
Sbjct: 177 ------------------------LKRCNEERQ----------TMFFSATFDKRIKTIAY 202
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L P+ + + E ++ + K K L L+ S ++ +VFT + + +
Sbjct: 203 KMLSEPVEVQVTPSN-STAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVLVFTKTKQGS 261
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
L L G IK +G + Q R K L F+ G+++ L+++D RG+D++ +
Sbjct: 262 DALAKELKLDG---IKAASINGDKSQGARQKALDDFKSGQVRALIATDVAARGLDIQQLE 318
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
VVN+D P + Y+HR GRT RAG+ G +L+ +DE
Sbjct: 319 QVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDE 356
>gi|424895190|ref|ZP_18318764.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393179417|gb|EJC79456.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 505
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 197/439 (44%), Gaps = 101/439 (23%)
Query: 21 GLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLALQVKDVFAA 78
L RD+C + TG+GKT S+ LP++ L RA R R L++ PTR+LA QV + F
Sbjct: 36 ALERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLILEPTRELAAQVAENFEK 95
Query: 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
L+V L +G G+ ++ +D ++L+ D+L+ TPGRL
Sbjct: 96 YGKNHRLNVALLIG-------------------GVSFEDQD--RKLERGADVLICTPGRL 134
Query: 139 MDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 197
+DH RG + + LV+DE DR+L F+P
Sbjct: 135 LDHFE--RGKLLMSGVEILVIDEADRMLDMG-------------------------FIPD 167
Query: 198 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 257
+ER K P+ R + SAT+ + KLA L +P
Sbjct: 168 ------------IERIAKMIPFTRQT-LFFSATMPPEIQKLADRFLQNP----------- 203
Query: 258 LPERLESYKLICESKLKPLYLVA--------------LLQSLGEEK-CIVFTSSVESTHR 302
ER+E K +K VA L+++ E K I+F + +
Sbjct: 204 --ERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQTELKNAIIFCNRKKDVAD 261
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L G + G Q R+ TL++FR+G +Q+LV+SD RG+D+ V++V
Sbjct: 262 LFRSLERHG---FSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDVAARGLDIPDVSHV 318
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLL-QKADNDSCPIHS 418
N+D P + + Y+HR GRT RAG+ G FTL+ K + V +KL+ +K + S ++S
Sbjct: 319 FNFDVPIHSEDYVHRIGRTGRAGRSGASFTLVTKRDSKFVDAIEKLIGEKVEWLSGDVNS 378
Query: 419 IPSS--LIESLRPVYKSGD 435
+P + +S RP S D
Sbjct: 379 LPPAEESADSERPRRNSRD 397
>gi|189239044|ref|XP_969373.2| PREDICTED: similar to CG9143 CG9143-PA [Tribolium castaneum]
Length = 645
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 195/423 (46%), Gaps = 58/423 (13%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-------LRALVVLPTRDLALQVKD 74
L RD+ + TGSGKTL++ LPIV + N + L ALV+ PTR+LA+QV+D
Sbjct: 137 LGRRDIVGAAETGSGKTLAFGLPIVAGILNEKSKVVGNSDKKLYALVLTPTRELAVQVRD 196
Query: 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134
AI +++ + +G + + L KRP +I+VAT
Sbjct: 197 HLKAIVKFTDINIAVVLGGMAAVKQERILSKRP---------------------EIVVAT 235
Query: 135 PGRLMDHINATRGFTLEHLC------YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
PGRL + I EHL YL +DETDR+L + + L +L+ D + R
Sbjct: 236 PGRLWELIQQGN----EHLSQINDIRYLAIDETDRMLEKGHFEELHNILERLNLD-KTRA 290
Query: 189 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--NKLAQLDLHHP 246
F+ SA +L D P R K +S Q + L + +P
Sbjct: 291 KQRQNFVFSATLTL-----------VHDLPKYRFNKSKVSKMTPQQKLSRIMTDLGIKNP 339
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
+ + P L ++ C + K Y+ LQ + ++F +S+ RL L
Sbjct: 340 KIVDISQGG-NTPATLTESRISCGIEEKDYYVYYFLQK-HPGRTLIFCNSIGCVRRLANL 397
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G + + S QRQ R K L+ FR+ + +LV++D RG+D+ + +V++Y
Sbjct: 398 LGILGCRPLPL-HASMQQRQ--RLKNLERFRDDEHGILVATDVAARGLDIPKIEHVLHYQ 454
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD-NDSCPIHSIPSSLIE 425
P ++Y+HR+GRTARA Q G L+ E++ + K+ + + ++ PI + ++
Sbjct: 455 TPRTSESYVHRSGRTARATQQGLTVVLMEPSEIQNYIKICKTLNRSEDLPIFPVQEEYLK 514
Query: 426 SLR 428
+++
Sbjct: 515 AVK 517
>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
HTCC2654]
gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2654]
Length = 474
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 181/403 (44%), Gaps = 79/403 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G + P+Q I P L RD+ + TG+GKT S+ LP++ L+ RA R R+
Sbjct: 21 GYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITMLARGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F A V L+ L +G G+ + +D
Sbjct: 77 LVLCPTRELAAQVAENFDTYAKHVKLTKALLIG-------------------GVSFKEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 118 QL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQVMVVDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER F P+ R + SAT+ + ++
Sbjct: 164 ---------------FIPD------------IERIFGLVPFTRQT-LFFSATMASEIERI 195
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE--KC 290
L +P + TTGE + + ++ + + K L AL+ GE
Sbjct: 196 TNTFLSNPARVEVARQATTGENIAQEVCKFKASRRDRAATEKRRLLRALIDREGEACTNA 255
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
I+F + + L +G I G QS R +TL+ FR+G ++ LV+SD
Sbjct: 256 IIFCNRKMDVDVVAKSLKKYGYDAAPI---HGDLDQSKRMETLQGFRDGTLRFLVASDVA 312
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ +
Sbjct: 313 ARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRKGKAVMI 355
>gi|358450610|ref|ZP_09161068.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357225259|gb|EHJ03766.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 427
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 181/406 (44%), Gaps = 74/406 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
+G P+Q ET+ L DL + TG+GKT ++ + +Q+L ++R
Sbjct: 29 IGFEYCTPIQA----ETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLETPIPETDRF 84
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
R L + PTR+LA+Q+ + G +V VG G+
Sbjct: 85 ASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVG-------------------GM 125
Query: 114 CYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
YD + D LQ VDILVATPGRL+D + + F L+ L L++DE DR+L +
Sbjct: 126 NYDKQRDQLQ--NEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEADRMLDMGF--- 179
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+P V ++ IR+C P ++ SAT
Sbjct: 180 IPDVKRI-------------------------IRKC--------TPKDERQTLLFSATFN 206
Query: 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
QD LA + + F+ E K ER+E + K LV L+ EK +V
Sbjct: 207 QDVLNLASMWTSNAEFVEI-EPEQKTAERVEQTVYLVGDDEKLPVLVNFLKRPEVEKALV 265
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F + + L L + G +K+ SG Q+ R KTL F++G IQVLV++D R
Sbjct: 266 FANRRDQCRDLEEDLRNQG---VKVALMSGEIAQNKRLKTLDQFKKGSIQVLVATDVAGR 322
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G+ V GV +V NY+ P + Y+HR GRT RAG+ G + +D+
Sbjct: 323 GIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGEDD 368
>gi|424910616|ref|ZP_18333993.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846647|gb|EJA99169.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 498
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 185/405 (45%), Gaps = 74/405 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L+V L +G G+ ++ +D
Sbjct: 77 LILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVSFEDQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERIAKMIPFTRQT-LFFSATMPPEIQKL 195
Query: 239 AQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
A L +P+ + + T + +R+ + K L + + + I+F +
Sbjct: 196 ADRFLQNPVRVEVAKPSSTAKTVAQRIVAAHNKDYEKRAVLRDLVRAEEAELKNAIIFCN 255
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ L L+ G + G Q R+ L+ F++G +++LV+SD RG+D
Sbjct: 256 RKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFKDGNLKLLVASDVAARGLD 312
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ K + K
Sbjct: 313 IPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTKSDTK 357
>gi|421498297|ref|ZP_15945417.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
gi|407182701|gb|EKE56638.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
Length = 417
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 169/385 (43%), Gaps = 68/385 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTL----SNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80
RDL + TG+GKT ++ LP+++ L + R +RALV++PTR+LA+QV +
Sbjct: 42 RDLLAGAQTGTGKTAAFVLPLLEQLMQQPQGESPRPIRALVLVPTRELAVQVFESVVRYG 101
Query: 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 140
L+ L G SIA ++ + L++ VD+L+ATPGRL+D
Sbjct: 102 QGTDLTSALVYGGVSIAAQV---------------------EALKNGVDLLIATPGRLLD 140
Query: 141 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 200
H+ L L +LV DE DR+L + + +L+ +D + A T + F
Sbjct: 141 HLRQG-ALRLGSLSHLVFDEADRMLDMGFMDEIKALLKQIPADRQTLLFSA-TCDDNLFA 198
Query: 201 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 260
K + R P L+++ P ++ ++ G+ + L E
Sbjct: 199 LSKVLLRD-----------PELIEVA--------PRNTTAAEVEQRVYAVDGDRKLALVE 239
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+ + K G ++F+ + + +L L G I +
Sbjct: 240 HMLTVK-------------------GWAPALIFSRTRQGADKLAQQLGKAG---INALAF 277
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G QS R K L FR G +Q LV++D RG+D+ +N V+N + P + Y+HR GR
Sbjct: 278 HGDLSQSAREKVLLEFRAGTLQALVATDVAARGLDISDLNYVINLEFPFVAEDYVHRIGR 337
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKL 405
T RAG G TL ++ +K+
Sbjct: 338 TGRAGNKGLAITLFSPEDAPLLEKV 362
>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 453
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 116/404 (28%), Positives = 185/404 (45%), Gaps = 81/404 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
MG S+ P+Q + I L +D+ + TG+GKT +++LP++Q L ++ A
Sbjct: 1 MGYESMTPIQA----QAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPA 56
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
+RALV+LPTR+LA QV A A L + G G+
Sbjct: 57 RHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFG-------------------GM 97
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
P+ + EL+ V++LVATPGRL+DHI A + L + Y+V+DE DR+L + L
Sbjct: 98 DMKPQTI--ELKKGVEVLVATPGRLLDHIEA-KNVVLNQVEYVVLDEADRMLDIGFLPDL 154
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L ++LP + +L + SAT +
Sbjct: 155 QRIL---------------SYLPKSRTTL-----------------------LFSATFSP 176
Query: 234 DPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 290
+ +LA L P+ + ET + +R YK+ + K + ++L+ +
Sbjct: 177 EIKRLAGSYLQDPVTIEVARPNETASTVEQRF--YKVTDDDKR--YAIRSVLKERDIRQA 232
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
+F++S RL L G ++ G + Q R K L+AF+ G++ +LV +D
Sbjct: 233 FIFSNSKLGCARLTRALERDG---LRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVA 289
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
RG+D++ V V NYD P + Y+HR GRT RAG G TL+
Sbjct: 290 ARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLV 333
>gi|411010851|ref|ZP_11387180.1| DEAD/DEAH box helicase [Aeromonas aquariorum AAK1]
Length = 406
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 188/418 (44%), Gaps = 74/418 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V Q I L RDL + TGSGKTL++ LP++Q L + A+ ++ LV++PTR+LA+QV
Sbjct: 26 VQQLAIPAALAGRDLLALARTGSGKTLAFGLPLLQRL-DPALAEVQGLVLVPTRELAVQV 84
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ A +GL + G A + +EL P+L LV
Sbjct: 85 SEALQGPAAGLGLRLVTLCGGVEQAQQQAELALGPQL---------------------LV 123
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA- 191
ATPGRL D + + TL L LV+DE DRLL + W P + L ++ + R
Sbjct: 124 ATPGRLRDLLG-QQLLTLAGLRTLVLDEADRLLEMGF--W-PDIQWLMKAMPDARQQMLF 179
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251
S LP+ +L T G +P A + DP D+ L+L
Sbjct: 180 SATLPAELEALAT--------GLLKEP----------ARVEADPRNSVADDIEERLYLVN 221
Query: 252 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311
+ K+P L++LL++ + +VF S+ + + L G
Sbjct: 222 KSS--KVP-----------------ALISLLKAHEWPQVLVFISARDDADGVARKLAKAG 262
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
I + G + Q+VR + L F+ GK++VLV++D M RG+ VE + V+N D PA
Sbjct: 263 ---IAVAALHGEKAQAVREQALGDFKVGKVRVLVATDLMARGIHVEALPLVINLDLPASA 319
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL-------LQKADNDSCPIHSIPSS 422
Y+HR GRTARAG+ G +L E + L AD P+ P+S
Sbjct: 320 PVYVHRIGRTARAGRSGLAISLTCHGEADTLAAIRTLTGRELPLADLTGFPVTDKPAS 377
>gi|340975938|gb|EGS23053.1| hypothetical protein CTHT_0015380 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 852
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 152/327 (46%), Gaps = 73/327 (22%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G F VQ AV + + D+ + +PTGSGKTLSY LP+V LS + LRAL+
Sbjct: 304 GFKDAFAVQTAVLPLLLPSADRQGDVVVAAPTGSGKTLSYVLPMVHDLSRGRITRLRALI 363
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVG------LAVGQSSIADEISELIKRPKLEAGICY 115
VLPTRDL QV+ A A ++ G A+G DE + ++ + Y
Sbjct: 364 VLPTRDLVHQVQLACETCAAAFAVNGGKRVKIATAMGNRPFKDEQTVIMGEEQ-----KY 418
Query: 116 DPEDVLQELQ----------------------------------SAVDILVATPGRLMDH 141
DPE + L+ S VDIL+ TPGRL++H
Sbjct: 419 DPEGFEKYLRKQDSFVDLEESDEEDDELHIGRTLPLPYHVISHVSKVDILICTPGRLVEH 478
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
I T GFTL+++ +L+VDE D+LL + +Q WL TV + ST P A
Sbjct: 479 ITKTPGFTLDYVRWLIVDEADKLLAQDFQQWLATVTE-----------KLSTAKPGAR-D 526
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK---L 258
T + GV K++LSAT+T+D + L L L P + TR L
Sbjct: 527 FPTSNKSGVR------------KVILSATMTRDLSLLNGLKLSRPQLVLVEGTRAGEQVL 574
Query: 259 PERLESYKL-ICESKLKPLYLVALLQS 284
P L + + + E+ LKPLYLV LL+S
Sbjct: 575 PSTLSEFAIKVREASLKPLYLVDLLRS 601
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 56/74 (75%)
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R++TL+AF +GK+++LV+SD ++RG+D+ + +VVNYD P +Y+HR GRTARAG+ G
Sbjct: 720 RTRTLRAFTQGKLRILVASDLVSRGIDLLNLEHVVNYDVPISETSYVHRVGRTARAGRKG 779
Query: 389 RCFTLLHKDEVKRF 402
+TL+ E +RF
Sbjct: 780 CAWTLVEFSEGRRF 793
>gi|325094386|gb|EGC47696.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus H88]
Length = 811
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 174/400 (43%), Gaps = 70/400 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAP 81
RD+ + TGSGKTL++ +P+++ L + L ALV+ PTR+LA+Q+ +V I
Sbjct: 87 RDILGAAKTGSGKTLAFLVPLLELLYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGR 146
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G + +E QE ++ILV TPGR++ H
Sbjct: 147 HHTFSAGLVIGGKGLQEE----------------------QERLGKMNILVCTPGRMLQH 184
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T F H+ LV+DE DR++ +Q+ + ++ LP
Sbjct: 185 MDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIID---------------HLPK---- 225
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPE 260
ER M+ SAT T+ + LA+L L P +++ ET P
Sbjct: 226 ---------ER----------QTMLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPA 266
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+L+ +I K L + ++S + K IVF SS + + H I +
Sbjct: 267 KLQQNYIITPLPEKLDTLWSFIRSSLKSKIIVFFSSGKQVRFVYESFRHM-RPGIPLLHL 325
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q+Q R K F K L ++D RG+D V+ V+ D P TYIHRAGR
Sbjct: 326 HGRQKQGARVDITKKFSAAKYACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGR 385
Query: 381 TARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHSI 419
TAR + GR L +E K+L QK PI I
Sbjct: 386 TARYERNGRAVLFLEPSEEAGMLKRLEQK----KIPIEKI 421
>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
Length = 464
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 116/404 (28%), Positives = 185/404 (45%), Gaps = 81/404 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
MG S+ P+Q + I L +D+ + TG+GKT +++LP++Q L ++ A
Sbjct: 12 MGYESMTPIQA----QAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPA 67
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
+RALV+LPTR+LA QV A A L + G G+
Sbjct: 68 RHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFG-------------------GM 108
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
P+ + EL+ V++LVATPGRL+DHI A + L + Y+V+DE DR+L + L
Sbjct: 109 DMKPQTI--ELKKGVEVLVATPGRLLDHIEA-KNVVLNQVEYVVLDEADRMLDIGFLPDL 165
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L ++LP + +L + SAT +
Sbjct: 166 QRIL---------------SYLPKSRTTL-----------------------LFSATFSP 187
Query: 234 DPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 290
+ +LA L P+ + ET + +R YK+ + K + ++L+ +
Sbjct: 188 EIKRLAGSYLQDPVTIEVARPNETASTVEQRF--YKVTDDDKR--YAIRSVLKERDIRQA 243
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
+F++S RL L G ++ G + Q R K L+AF+ G++ +LV +D
Sbjct: 244 FIFSNSKLGCARLTRALERDG---LRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVA 300
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
RG+D++ V V NYD P + Y+HR GRT RAG G TL+
Sbjct: 301 ARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLV 344
>gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
HTCC2503]
gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
HTCC2503]
Length = 460
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 196/428 (45%), Gaps = 71/428 (16%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--A 59
G + P+Q + I L RD+ + TG+GKT S+ LP++ L+ R +
Sbjct: 33 GYTHPTPIQA----DAIPEALRGRDVLGIAQTGTGKTASFVLPVIHRLARGRARARMPRS 88
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F LS+ L +G S AD+ ++L +
Sbjct: 89 LILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAKLTR-------------- 134
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
VD+L+ATPGRL+DH RG L L +VVDE DR+L + L + +
Sbjct: 135 -------GVDVLIATPGRLLDH--HERGKLLLTGLEVMVVDEADRMLDMGFIPDLERIFK 185
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LT + F A+ +P RL LSA
Sbjct: 186 LTPFTRQTLFFSAT--MPPEI--------------------QRLTDQFLSAP-------- 215
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK-CIVFTSSV 297
A++++ P TT +T + RL S E KLK L L+++ K I+F +
Sbjct: 216 ARIEVAKPA--TTAKTITQRIARLPS----GEDKLKRAALRHLVETAENLKNGIIFCNRK 269
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
++ + L G + G QS R++TL+ FR+G +++LV+SD RG+D+
Sbjct: 270 KNVDVIAKSLQEHG---FDARPIHGDLPQSFRTETLQMFRDGGLKLLVASDVAARGLDIP 326
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 417
V++V N+ P Y+HR GRT RAG+LG L+ D+ K F +L+ D H
Sbjct: 327 DVSHVFNFSVPINADDYVHRIGRTGRAGRLGHAVMLVTPDDGKAFDAVLKVTGLDKIEEH 386
Query: 418 SIPSSLIE 425
I S+L++
Sbjct: 387 DI-SALLD 393
>gi|444307939|ref|ZP_21143643.1| DNA/RNA helicase, partial [Arthrobacter sp. SJCon]
gi|443479729|gb|ELT42720.1| DNA/RNA helicase, partial [Arthrobacter sp. SJCon]
Length = 431
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 183/417 (43%), Gaps = 75/417 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 58
GI S FP+QV +T L RD+ TGSGKT+++A+P+V L+ R R
Sbjct: 21 GIESPFPIQVKTLPDT----LAGRDVLGRGRTGSGKTIAFAIPLVARLAEREAPYFRKPG 76
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LV+ PTR+LA Q+ +A A GL+ + G IS+ + L AG
Sbjct: 77 RPMGLVLAPTRELATQINATIEPLAKAAGLNTTVIYGG------ISQARQEKALRAG--- 127
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
VDI++A PGRL D I R TLE + V+DE D + + +
Sbjct: 128 ------------VDIVIACPGRLEDLIR-QRILTLEAVEITVLDEADHMADLGFLPVVKK 174
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
++ +T S + +++ SATL
Sbjct: 175 LMDMTPSQGQ--------------------------------------RLLFSATLDNGV 196
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
+K+ Q L +PL + + + + +E + L+ + L+ L S G + ++F
Sbjct: 197 DKIVQRYLSNPLTHSVDDPQAAV-TTMEHHVLVVNDQTVKKQLIVELAS-GAGRRVLFMR 254
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ +L L G I + G Q+ R + L F G+++VLV++D RG+
Sbjct: 255 TKHHARKLAKTLTDAG---IPAVDLHGNLSQNARDRNLAEFSSGEVRVLVATDVAARGVH 311
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
V+ V V++ D P K Y+HR+GRTARAG G TL ++ KKL++ A D
Sbjct: 312 VDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQTDVKKLMKAAGVD 368
>gi|418529602|ref|ZP_13095535.1| hypothetical protein CTATCC11996_07935 [Comamonas testosteroni ATCC
11996]
gi|371453317|gb|EHN66336.1| hypothetical protein CTATCC11996_07935 [Comamonas testosteroni ATCC
11996]
Length = 429
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 187/423 (44%), Gaps = 91/423 (21%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------V 54
+G+ P+Q E I L RDL +PTGSGKT++Y LP++Q + V
Sbjct: 19 LGLRDATPIQT----EAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQKRGHTGFV 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK---LEA 111
R L L+++PTR+LALQV + S++D +L ++P+ +
Sbjct: 75 RPLATLILVPTRELALQVHE--------------------SLSDITRQLREQPRSRVVYG 114
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAY 169
G+ +P+ + +L+ + D LVATPGRL+D + NA R ++H LV+DE DRLL + +
Sbjct: 115 GVSINPQ--MMQLRGSADFLVATPGRLLDLVENNAVRLNAVQH---LVLDEADRLLDQGF 169
Query: 170 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
L VL L LP+ +L +LSA
Sbjct: 170 AEELNRVLAL---------------LPAKRQTL-----------------------LLSA 191
Query: 230 TLTQDPNKLAQLDLHHPLFLTTGETRY----KLPERLESYKLICESKLKPLYLVALLQSL 285
T Q+ LA LH P+ + + PE + S + I + L+ L +
Sbjct: 192 TFPQNVEALAARLLHDPVRVQVDADQTAEHSSSPENI-SQRAIAVDSTRRTQLLRQLVTQ 250
Query: 286 GE-----EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
GE E+ +VF + + L L G I + G Q R L F+ +
Sbjct: 251 GENQPEWERALVFVAKRHTAEMLADKLYKAG---IYATTFHGDMSQGARKDVLDQFKAKR 307
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
Q+L+++D RG+D+ + V+NYD P YIHR GRT RAG G T + +
Sbjct: 308 WQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFVSPADTA 367
Query: 401 RFK 403
++
Sbjct: 368 HWQ 370
>gi|240275036|gb|EER38551.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus H143]
Length = 811
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 174/400 (43%), Gaps = 70/400 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAP 81
RD+ + TGSGKTL++ +P+++ L + L ALV+ PTR+LA+Q+ +V I
Sbjct: 87 RDILGAAKTGSGKTLAFLVPLLELLYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGR 146
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G + +E QE ++ILV TPGR++ H
Sbjct: 147 HHTFSAGLVIGGKGLQEE----------------------QERLGKMNILVCTPGRMLQH 184
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T F H+ LV+DE DR++ +Q+ + ++ LP
Sbjct: 185 MDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIID---------------HLPK---- 225
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPE 260
ER M+ SAT T+ + LA+L L P +++ ET P
Sbjct: 226 ---------ER----------QTMLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPA 266
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+L+ +I K L + ++S + K IVF SS + + H I +
Sbjct: 267 KLQQNYIITPLPEKLDTLWSFIRSSLKSKIIVFFSSGKQVRFVYESFRHM-RPGIPLLHL 325
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q+Q R K F K L ++D RG+D V+ V+ D P TYIHRAGR
Sbjct: 326 HGRQKQGARVDITKKFSAAKYACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGR 385
Query: 381 TARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHSI 419
TAR + GR L +E K+L QK PI I
Sbjct: 386 TARYERNGRAVLFLEPSEEAGMLKRLEQK----KIPIEKI 421
>gi|291001093|ref|XP_002683113.1| predicted protein [Naegleria gruberi]
gi|284096742|gb|EFC50369.1| predicted protein [Naegleria gruberi]
Length = 577
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 123/455 (27%), Positives = 197/455 (43%), Gaps = 94/455 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR----- 55
MGI L +Q + P L + ++ + S TGSGKTL+Y +P+++ L +++
Sbjct: 67 MGIERLTKIQT----RALSPILGKSNVLMKSETGSGKTLAYLIPLIEMLYRQSLEKKISR 122
Query: 56 --CLRALVVLPTRDLALQVKDVFAAIAPAVGLSV--GLAVGQSSIADEISELIKRPKLEA 111
A+++ PTR+L +QV V I ++ V G+ G+ +++
Sbjct: 123 DDGTFAIILAPTRELCVQVDKVLKKITSSLNFMVCGGIMGGEKRKSEK------------ 170
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ L+ V+ILVATPGRL DH+ +T+ F + + YL++DE D LL ++
Sbjct: 171 ----------ERLRKGVNILVATPGRLEDHLRSTQSFKCDKVKYLILDEADILLDFGFEE 220
Query: 172 WLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
+ + Q L + +N I + E+ + + K+++SAT
Sbjct: 221 RVKNIYQMLIQRKLQNPL----------------ISQNQTEKTLSES----IQKVLVSAT 260
Query: 231 LTQDPNKLA-QLDLHHPLFLTTG------------------ETRYKLPERLESYKLICES 271
L LA Q+D+ + L++ G + +P L Y +I
Sbjct: 261 LHSKIQTLAQQIDVVNALYIGHGSDGEFIEKVFNLITDKLPSNIFTIPAHLTQYAIIVPP 320
Query: 272 KLKPLYLVALL------QSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEY--- 320
+ + + L L +SL +E K IVF S +S +F IKE
Sbjct: 321 QFRLVMLAGFLRSKTMSESLEQEPGKIIVFLSCCDSVEFHYNFFKYFQSKFKFIKEVPLI 380
Query: 321 -------SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 373
G Q R+ K F + K VL +D RG+D+ V +V YD P K
Sbjct: 381 HVPLFKLHGDIEQKERTNIFKQFSDAKEGVLFCTDVAARGLDLPCVKWIVQYDPPGNPKE 440
Query: 374 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
Y+HR GRTAR G G LH E + +KKLL+K
Sbjct: 441 YLHRIGRTARMGVKGHAVMFLHPHE-ELYKKLLEK 474
>gi|411007387|ref|ZP_11383716.1| DEAD/DEAH box helicase [Streptomyces globisporus C-1027]
Length = 539
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 181/416 (43%), Gaps = 83/416 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRA 59
G++ FP+Q A + L RD+ TGSGKTL++ L ++ + R R A
Sbjct: 101 GVTEPFPIQGATLPNS----LAGRDILGRGRTGSGKTLAFGLAMLARTAGRRSEPRAPLA 156
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
+V++PTR+LA QV D A AV L + VG SI + + L
Sbjct: 157 MVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATL---------------- 200
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ ++LVATPGRL D I RG L+ + V+DE D++ A ++P V+
Sbjct: 201 -----RRGAEVLVATPGRLKDLIE--RGDCRLDQVAITVLDEADQM---ADMGFMPQVVA 250
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK---DKPYPRLVKMVLSATLTQ-- 233
L LK + G F DK RLVKM L+ +
Sbjct: 251 L----------------------LKQVEADGQRMLFSATLDKNIDRLVKMFLTDPVVHSV 288
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
DP+ A + H + ET K VA + + + I+F
Sbjct: 289 DPSAGAVTTMEHHVLHVLDETDKKA--------------------VATKIAARDGRVIMF 328
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
+ + R L G ++ G + Q R++TL F+ G++ LV+++ RG
Sbjct: 329 VDTKRAADRFAKRLLASG---VRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVAARG 385
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+ V+ ++ VVN D P K Y+HR GRTARAG+ G TL+ DE + +L+Q A
Sbjct: 386 IHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKREMTRLMQDA 441
>gi|420238250|ref|ZP_14742670.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
gi|398087778|gb|EJL78357.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
Length = 517
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/407 (28%), Positives = 179/407 (43%), Gaps = 91/407 (22%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPT 65
P+Q I L RD+C + TG+GKT S+ LP++ L RA R R L++ PT
Sbjct: 27 PIQAGA----IPHALQRRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLILEPT 82
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LA QV + F L+V L +G G+ +D +D ++L+
Sbjct: 83 RELAAQVAENFEKYGKNHKLNVALLIG-------------------GVSFDDQD--RKLE 121
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 122 RGADVLICTPGRLLDHCERGK-LLMTGVEILVIDEADRMLDMG----------------- 163
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
F+P +ER K P+ R + SAT+ + KLA L +
Sbjct: 164 --------FIPD------------IERIAKMIPFTRQT-LFFSATMPPEIQKLADRFLQN 202
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV---------FTSS 296
P ER+E K +K LVA E++ ++ ++
Sbjct: 203 P-------------ERIEVAKPSSTAKTVTQRLVASHNKDYEKRAVLRDLIKAQDDLKNA 249
Query: 297 VESTHRLCTLLNHFGELR---IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
+ +R + + F L + G Q R+ L+ FR+G IQ+LV+SD RG
Sbjct: 250 IIFCNRKVDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNIQLLVASDVAARG 309
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+D+ V +V N+D P + + Y+HR GRT RAG+ GR FTL+ + + K
Sbjct: 310 LDLPDVGHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLVTRSDTK 356
>gi|255956777|ref|XP_002569141.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590852|emb|CAP97066.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 913
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 180/396 (45%), Gaps = 39/396 (9%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRALVVLPT 65
F V + ++TI + ++D+ + TGSGKT S+ +P+++ L S+ RAL++ P+
Sbjct: 105 FSVPTPIQRKTIPVIMDDKDVVGMARTGSGKTASFVIPMIEKLKSHSTTFGARALIMSPS 164
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ V + L+ L +G S+ D+ + P
Sbjct: 165 RELALQTMKVVKEMGKGTNLTSVLLIGGDSLEDQFGMMASNP------------------ 206
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DI++ATPGR + H+ L + Y+V DE DRL + A L +L ++ +
Sbjct: 207 ---DIIIATPGRFL-HLKVEMDMDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPTNRQ 262
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLA 239
A+ LP SL R G++ ++K P L + + L
Sbjct: 263 TLLFSAT--LPK---SLVEFARAGLQEPSLIRLDTENKVSPDLQNAFFAIKSSDKEGALL 317
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL-VALLQSLGEEKCIVFTSSVE 298
+ LH + + TGET + R E+ + K + L +S + IVF ++
Sbjct: 318 HI-LHDIIKMPTGETDIGVRLRQEAENPSRKRKRSDVRLPSGFKESPTKHSTIVFAATKH 376
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
L +LL G G Q+ R+ ++ FR G +LV +D RG+D+
Sbjct: 377 HVDYLYSLLVEAG---FATSYAYGSLDQTARNHHVQNFRSGISNILVVTDVAARGIDIPV 433
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ NV+NYD P+ K +IHR GRTARAGQ G ++L+
Sbjct: 434 LANVINYDFPSQPKIFIHRVGRTARAGQKGWSYSLV 469
>gi|449668048|ref|XP_004206700.1| PREDICTED: probable ATP-dependent RNA helicase ddx31-like [Hydra
magnipapillata]
Length = 912
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/426 (27%), Positives = 183/426 (42%), Gaps = 86/426 (20%)
Query: 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQ 71
+I P L +D I SPTGSGKT YA+PI+ + R AL+++PTR+LALQ
Sbjct: 127 SIPPLLNGKDAMIKSPTGSGKTFCYAIPIIDKIIKMKPSIGRQDGPFALIIVPTRELALQ 186
Query: 72 VKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 130
++ + + + + G+ +G E + +L GI +I
Sbjct: 187 TFNIVQDLCKSCISIVPGMLIGGEKCKSE------KARLRKGI---------------NI 225
Query: 131 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 190
+VATPGR H+ T + + YLV+DE D+LL ++ + +L F D
Sbjct: 226 IVATPGRFQYHLKETSCLNVSKIKYLVLDEADKLLSMGFEKTIKEILG---------FLD 276
Query: 191 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 250
+ +++R V +LSATL++D LA L L + +F+
Sbjct: 277 QHS----------SLKRQSV---------------LLSATLSKDIENLASLSLSNHVFVD 311
Query: 251 TGET---------RYKLPERLESYKLICESKLKPLYLVALL---QSLGEEKCIVFTSSVE 298
+ + Y +P L Y + +KL+ + + + + ++K IVF S+
Sbjct: 312 SSKKDDFDPKAIHEYVVPSSLTQYFVTVPAKLRLVTIFCFICDNAFVEKKKIIVFVSNKN 371
Query: 299 STH--------RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
S H L + H L + G Q R K F+E VL +D
Sbjct: 372 SVHFHYEALKLFLAEVDTHSEMLFKNVYMLHGDMTQEQRFKNFDLFKESSFGVLFCTDVG 431
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 410
RG+D++ V+ +V Y P + Y+HR GRTAR G+ G+ L EV K L
Sbjct: 432 ARGLDIKKVDWIVQYSCPTQFEDYLHRVGRTARIGEKGKSLLFLLPSEVGYVKFL----- 486
Query: 411 NDSCPI 416
NDS I
Sbjct: 487 NDSLVI 492
>gi|327353326|gb|EGE82183.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ATCC
18188]
Length = 945
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 181/400 (45%), Gaps = 39/400 (9%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 65
F V + ++TI L ++D+ + TGSGKT ++ +P+++ L N + + RAL++ P+
Sbjct: 106 FSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEKLKNHSAKFGSRALILSPS 165
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ V + L L VG S+ ++ + P
Sbjct: 166 RELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGNP------------------ 207
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DI++ATPGR + H+ L + Y+V DE DRL + A L +L S +
Sbjct: 208 ---DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSRQ 263
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLA 239
A+ LP SL R G++ + K P L + ++ L
Sbjct: 264 TLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISPDLQNAFFTVKSSEKEGALL 318
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L LH + + TGET + E+ K + K + +S E I+FT++
Sbjct: 319 HL-LHEVIKIPTGETEAHKRAKEEA-KNPKKRKRSEFASNSHKESPTEHSTIIFTATKHH 376
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L ++L G + G Q+ R ++ FR G +LV +D RG+D+ +
Sbjct: 377 VDYLVSILRISG---FAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPIL 433
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 434 FNVINYDFPSQAKIFVHRVGRTARAGKTGWSYSLIRESDA 473
>gi|297197315|ref|ZP_06914712.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
gi|197714892|gb|EDY58926.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
Length = 469
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 189/410 (46%), Gaps = 72/410 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI-VQTLSNRA-VRCLRA 59
G+ FP+Q A + L RD+ TGSGKTL++ LP+ V+T RA + A
Sbjct: 45 GVREPFPIQAATLPDA----LAGRDVLGRGRTGSGKTLAFGLPLLVRTAGQRAEAKQPLA 100
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LA QV + A A A+GL + VG SI +I+ L
Sbjct: 101 LILVPTRELAQQVSEALAPYAEALGLRMAAVVGGMSIGRQIAAL---------------- 144
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+ +++VATPGRL D LV + RL R +++
Sbjct: 145 -----RDGAEVVVATPGRLHD---------------LVERKACRLGR----------VRI 174
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
T D ++ D FLP L +R P +M+ SATL +D ++L
Sbjct: 175 TVLDEADQMCDLG-FLPQVTEVLDQVR-------------PEGQRMLFSATLDRDVDQLV 220
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
LH P+ + + + ++ + L+ + Y V + + + ++F +++
Sbjct: 221 SRYLHDPVVHSVDPSAGAV-TTMDHHVLVVHGPDR--YAVTTEIAARDGRVLLF---LDT 274
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
H + L H + + Q R++TL F+ G++ VLV+++ RG+ V+ +
Sbjct: 275 KHGVDQLTRHLRGSGVHAAALHSGKSQPQRTRTLAQFKNGQVTVLVATNVAARGLHVDDL 334
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+ VVN D P K Y+HRAGRTARAG+ GR TL+ + + +L+ +A
Sbjct: 335 DLVVNVDPPTDAKDYLHRAGRTARAGESGRVVTLVLSGQRRETSRLMAEA 384
>gi|146414784|ref|XP_001483362.1| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
6260]
Length = 433
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/398 (29%), Positives = 178/398 (44%), Gaps = 65/398 (16%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
++ E I L RD + TGSGKT+++A P++ S + LV+ PTR+LALQ
Sbjct: 26 SIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPF-GIYGLVLTPTRELALQ 84
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
+ + F A+ ++ + V + VG + + E+ K P +
Sbjct: 85 IAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHF---------------------I 123
Query: 132 VATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
+ATPGRL DHI + T L+ + +LV+DE DRLL ++ + L ++
Sbjct: 124 IATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKI--------L 175
Query: 189 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 248
DAS F + T R KDKP P K P+F
Sbjct: 176 PDASKRQTLLFTATVT----DAVRALKDKPVPEGKK---------------------PVF 210
Query: 249 L--TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC--IVFTSSVESTHRLC 304
+ + + +P L + S +K YL +L EK IVF V T+
Sbjct: 211 IHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVLPKYEKALAIVF---VNRTYTAE 267
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L +L I++ QS R+ +L FR G +VL+++D +RG+D+ V VVN
Sbjct: 268 ILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVELVVN 327
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
D PA YIHR GRTARAG+ G +++ + +V+R
Sbjct: 328 QDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERI 365
>gi|392568267|gb|EIW61441.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 465
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 192/406 (47%), Gaps = 48/406 (11%)
Query: 18 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77
I P L RD N+ TGSGKT+++ALPI+Q LS ALV+ PTR+LA Q+ + FA
Sbjct: 27 IPPLLQGRDCIGNAKTGSGKTIAFALPILQKLSLDPYGIF-ALVLTPTRELAFQIAEQFA 85
Query: 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 137
+ + L + VG + + EL RP ++VATPGR
Sbjct: 86 VLGAPLSLRTAVVVGGIDMMAQALELGNRPH---------------------VVVATPGR 124
Query: 138 LMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 196
++D + +T G + L + +LV+DE DRLL ++ L + + + + S F
Sbjct: 125 IVDLLRSTSGEWDLSRIKFLVLDEADRLLTSSFAPELSYLFNILPKERQT-----SLFTA 179
Query: 197 SAFGSLKTIRRCGVERGFKDKPY-PRLVKMVLSA-TLTQD----PNKLAQLDLHHPLFL- 249
+ +++ I + G K KP+ R+ V + TL Q P+ + + L+H FL
Sbjct: 180 TLTDAVERIADASPKPG-KQKPFVHRMTARVETVETLKQYYILVPSHIREAYLYH--FLC 236
Query: 250 ----TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK---CIVFTSSVESTHR 302
+T R PE+++ K ++K +P A E+ I+F +
Sbjct: 237 NPPESTHHLRRAPPEKVKPTKKGSKAKARPSKKKASEDPDAIEQPPPTIIFCMRPRTAAY 296
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LL L I+ Q R +L FR + VLVS+D RG+D+E V V
Sbjct: 297 LTHLLQ---TLHIRATALHSRLTQRERLSSLALFRASVVPVLVSTDVGARGLDIEDVALV 353
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
VN+D PA + Y HR GRTARAG+ G + + + + +R K+ ++
Sbjct: 354 VNWDLPAESEEYTHRVGRTARAGKGGLAVSFVTERDEERVLKVEER 399
>gi|357127458|ref|XP_003565397.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 14-like
[Brachypodium distachyon]
Length = 655
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 182/411 (44%), Gaps = 73/411 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP---IVQTLSNRAVRCLR 58
G S+ P+Q W T L RD+ + TGSGKTL Y LP +V+ L N +
Sbjct: 174 GFSAPSPIQAQSWPIT----LKGRDIVAVAKTGSGKTLGYLLPGFILVKNLRNNSRDGPT 229
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
LV+ PTR+LA Q++D + G+SS IS L G P+
Sbjct: 230 VLVLSPTRELATQIQDE------------AVKFGRSS---RISSTC----LYGGAPKGPQ 270
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L++L+ DI+VATPGRL D I R +L + YLV+DE DR+L ++ + +++
Sbjct: 271 --LRDLERGADIVVATPGRLND-ILEMRKVSLHQVAYLVLDEADRMLDMGFEPQIRKIVK 327
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
+ P+ ++ +AT ++ K+
Sbjct: 328 QVQ--------------------------------------PKRQTLMFTATWPKEVRKI 349
Query: 239 AQLDLHHPLFLTTGETRYKLPER-LESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSS 296
A L +P+ + G T + + + Y + K L +L+S + I+F
Sbjct: 350 ASDLLTNPVQVNIGNTDQLVANKSITQYVEVISPMEKQRRLDQILRSQEPGSRIIIFC-- 407
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
ST R+C L+ + G + Q+ R L FR G+ +LV++D RG+DV
Sbjct: 408 --STKRMCDQLSRNLSRQYGASAIHGDKSQAERDSVLSEFRNGRCPILVATDVAARGLDV 465
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
+ + VVNYD P ++ Y+HR GRT RAG G +T + K L++
Sbjct: 466 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFCDQDSKYASDLVK 516
>gi|66810125|ref|XP_638786.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
gi|74897069|sp|Q54Q94.1|DDX10_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx10; AltName:
Full=DEAD box protein 10
gi|60467406|gb|EAL65432.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
Length = 878
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 177/391 (45%), Gaps = 71/391 (18%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTL-SNRAVR--CLRALVVLPTRDLALQVKDVFAAIAP 81
RD+ + TGSGKTLS+ LPI++TL NR R + A+V+ PTR+LA+Q+ DV A+
Sbjct: 179 RDILGAAKTGSGKTLSFILPILETLWRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGK 238
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G ++ E ++ +A++IL+ATPGRL+ H
Sbjct: 239 YHTFSAGLIIGGRNVQQEKDKI----------------------NAMNILIATPGRLLQH 276
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T GF +L LV+DE DR+L + L +++ EN LP +
Sbjct: 277 MDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIV-------EN--------LPRERQT 321
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY-KLPE 260
L + SAT T+ LA+L L P +++ E P+
Sbjct: 322 L-----------------------LFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQ 358
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCTLLNHFGELRIKI 317
L + ++K L + +++ K IVF +S V H LLN L
Sbjct: 359 NLTQTLCVIPLEMKLNMLFSFIKTHLTSKIIVFFASCKQVRFAHETFKLLNPGTTLF--- 415
Query: 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 377
G +Q R + + F + K L ++D RG+D V V+ D P I+TYIHR
Sbjct: 416 -PLHGKMKQWTRLEVFEDFCKKKAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHR 474
Query: 378 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
GRTAR G+ T+L E L++K
Sbjct: 475 VGRTARNDAPGQSITILLPSEKDGMVNLMEK 505
>gi|50289935|ref|XP_447399.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661253|sp|Q6FQU5.1|DHH1_CANGA RecName: Full=ATP-dependent RNA helicase DHH1
gi|49526709|emb|CAG60336.1| unnamed protein product [Candida glabrata]
Length = 507
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 193/428 (45%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E I + RD+ + G+GKT ++ +P ++ + + + ++A
Sbjct: 44 MGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKIKPK-LNKIQA 102
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + G+S + G +++ D+I L
Sbjct: 103 LIMVPTRELALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDILRL---------------- 146
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
V +LV TPGR++D + + + L V+DE D++L ++ + VL
Sbjct: 147 -----NETVHVLVGTPGRVLD-LASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVL-- 198
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
TFLP A SL +P VK + L +K
Sbjct: 199 -------------TFLPKAHQSL-----------LFSATFPLTVKEFMVKHL----HKPY 230
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 231 EINLMEELTLKGITQYYAFVE--ERQKLHC--------LNTLFSKLQINQAIIFCNS--- 277
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L +L +Q R+K FR+GK++ LV SD +TRG+D++ V
Sbjct: 278 TNRVELLAKKITDLGYSCYYSHARMKQQDRNKVFHDFRQGKVRTLVCSDLLTRGIDIQAV 337
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +I
Sbjct: 338 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAI 394
Query: 420 PSSLIESL 427
P+++ +SL
Sbjct: 395 PATIDKSL 402
>gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa]
gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 192/417 (46%), Gaps = 60/417 (14%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAVRCLRAL 60
P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S A+
Sbjct: 315 PIQMAA----IPLGLQQRDVIGIAETGSGKTCAFVLPMLTYISRLPPMSEENEAEGPYAV 370
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q++D A +G+ V VG SI E G
Sbjct: 371 VMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE------------EQGF------- 411
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++ ++++ATPGRL+D + R L Y+V+DE DR++ ++ + VL
Sbjct: 412 --RIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVL--- 465
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
DA +PS+ ++ + +K R M SAT+ +LA+
Sbjct: 466 ---------DA---MPSS-----NLKPENEDEELDEKKIYRTTYM-FSATMPPAVERLAR 507
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L +P+ +T G T K + + + ++ + K L LL LG++ IVF ++ ++
Sbjct: 508 KYLRNPVVVTIG-TAGKATDLISQHVIMTKESEKSSRLHRLLDELGDKTAIVFVNTKKNA 566
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
+ L+ G ++ G + Q R +L+ FR + VLV++D RG+D+ V
Sbjct: 567 DMVAKNLDKHG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVA 623
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK--ADNDSCP 415
+V+NYD P I+ Y HR GRT RAG+ G T L + F L Q N S P
Sbjct: 624 HVINYDMPGNIEMYTHRIGRTGRAGKTGVASTFLTLGDTDVFYDLKQMLIQSNSSVP 680
>gi|421588772|ref|ZP_16034016.1| ATP dependent RNA helicase [Rhizobium sp. Pop5]
gi|403706463|gb|EJZ21720.1| ATP dependent RNA helicase [Rhizobium sp. Pop5]
Length = 499
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 189/421 (44%), Gaps = 97/421 (23%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLALQVKDVFAAI 79
L RD+C + TG+GKT S+ LP++ L RA R R L++ PTR+LA QV + F
Sbjct: 37 LERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKY 96
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
L+V L +G G+ ++ +D ++L+ D+L+ TPGRL+
Sbjct: 97 GKNHRLNVALLIG-------------------GVSFEDQD--RKLERGADVLICTPGRLL 135
Query: 140 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 199
DH + + + LV+DE DR+L F+P
Sbjct: 136 DHFERGK-LLMSGVEILVIDEADRMLDMG-------------------------FIPD-- 167
Query: 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 259
+ER K P+ R + SAT+ + KLA L +P
Sbjct: 168 ----------IERIAKLIPFTRQT-LFFSATMPPEIQKLADRFLQNP------------- 203
Query: 260 ERLESYKLICESKLKPLYLVA--------------LLQSLGEEK-CIVFTSSVESTHRLC 304
ER+E K +K VA L+++ GE K I+F + + L
Sbjct: 204 ERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQGELKNAIIFCNRKKDVADLF 263
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L G + G Q R+ L+ FR+G +Q+LV+SD RG+D+ V++V N
Sbjct: 264 RSLERHG---FSVGALHGDMDQRSRTTMLQNFRDGNLQLLVASDVAARGLDIPDVSHVFN 320
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL-QKADNDSCPIHSIP 420
+D P + + Y+HR GRT RAG+ G FTL+ K + K +KL+ +K + S ++S+P
Sbjct: 321 FDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEKLIGEKVEWLSGDLNSLP 380
Query: 421 S 421
+
Sbjct: 381 A 381
>gi|398353630|ref|YP_006399094.1| ATP-dependent RNA helicase RhlE [Sinorhizobium fredii USDA 257]
gi|390128956|gb|AFL52337.1| ATP-dependent RNA helicase RhlE [Sinorhizobium fredii USDA 257]
Length = 501
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 187/424 (44%), Gaps = 98/424 (23%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+QV I P L RD+ + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTTPTPIQVGA----IPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L++ L +G G+ +D +D
Sbjct: 77 LILEPTRELAAQVTENFDKYGKNHKLNIALLIG-------------------GVSFDEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++L+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHFERGK-LLMSGVEILVIDEADRMLDMG----------- 163
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
F+P +ER K P+ R + SAT+ + KLA
Sbjct: 164 --------------FIPD------------IERIAKLIPFTRQT-LFFSATMPPEIQKLA 196
Query: 240 QLDLHHPLFLTTGETRYKLPERLE-----SYKLICESKL---------KPLYLVALLQSL 285
L +P ER+E S + + K L L+++
Sbjct: 197 DRFLQNP-------------ERVEVARPASAAITVTQRFVAAHGKDYEKRAVLRDLIRAQ 243
Query: 286 GEEK-CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
GE K I+F + + L L+ G + G Q R L +F++G IQ+L
Sbjct: 244 GELKNAIIFCNRKKDVAELFRSLDRHG---FSVGALHGDMDQRSRMAMLASFKDGNIQLL 300
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 404
V+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G FT++ K + K F
Sbjct: 301 VASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTK-FSD 359
Query: 405 LLQK 408
++K
Sbjct: 360 AIEK 363
>gi|239986972|ref|ZP_04707636.1| putative DEAD-box RNA helicase [Streptomyces roseosporus NRRL
11379]
gi|291443920|ref|ZP_06583310.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291346867|gb|EFE73771.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 539
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 181/416 (43%), Gaps = 83/416 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRA 59
G++ FP+Q A + L RD+ TGSGKTL++ L ++ + R R A
Sbjct: 101 GVTEPFPIQGATLPNS----LAGRDILGRGRTGSGKTLAFGLALLARTAGRRSEPRAPLA 156
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
+V++PTR+LA QV D A AV L + VG SI + + L
Sbjct: 157 MVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATL---------------- 200
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ ++LVATPGRL D I RG L+ + V+DE D++ A ++P V+
Sbjct: 201 -----RRGAEVLVATPGRLKDLIE--RGDCRLDQVAITVLDEADQM---ADMGFMPQVVA 250
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK---DKPYPRLVKMVLSATLTQ-- 233
L LK + G F DK RLVKM L+ +
Sbjct: 251 L----------------------LKQVEADGQRMLFSATLDKNIDRLVKMFLTDPVVHSV 288
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
DP+ A + H + ET K VA + + + I+F
Sbjct: 289 DPSAGAVTTMEHHVLHVLDETDKKA--------------------VATKIAARDGRVIMF 328
Query: 294 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353
+ + R L G ++ G + Q R++TL F+ G++ LV+++ RG
Sbjct: 329 VDTKRAADRFAKRLLASG---VRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVAARG 385
Query: 354 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+ V+ ++ VVN D P K Y+HR GRTARAG+ G TL+ DE + +L+Q A
Sbjct: 386 IHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKREMTRLMQDA 441
>gi|346992915|ref|ZP_08860987.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. TW15]
Length = 455
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 176/391 (45%), Gaps = 76/391 (19%)
Query: 15 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLALQ 71
QE P E RD+ + TG+GKT S+ LP++ L+ RA R R+LV+ PTR+LA Q
Sbjct: 34 QEGAIPAALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQ 93
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
V + F A + L+ L +G G+ + +D L + VD+L
Sbjct: 94 VAENFDTYAKHLKLTKALLIG-------------------GVSFKEQDAL--IDRGVDVL 132
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
+ATPGRL+DH + L + +VVDE DR+L
Sbjct: 133 IATPGRLLDHFERGK-LLLTGVQIMVVDEADRMLDMG----------------------- 168
Query: 192 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL-- 249
F+P +ER F P+ R + SAT+ + ++ L P +
Sbjct: 169 --FIPD------------IERIFSLTPFTRQT-LFFSATMAPEIERITDTFLSAPTRVEV 213
Query: 250 ----TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC---IVFTSSVESTHR 302
T ET + + + E+ K L AL+ S GE KC I+F +
Sbjct: 214 ARQATASETIEQGVVMFKGGRRDREASQKRKTLRALIDSEGE-KCTNAIIFCNRKTDVDI 272
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L +G I G QS R KTL FR+G +++LV+SD RG+D+ V++V
Sbjct: 273 CAKSLKKYGYNAAAI---HGDLDQSQRMKTLDGFRDGSLRLLVASDVAARGLDIPSVSHV 329
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
N+D P + + Y+HR GRT RAG+ G+ T+
Sbjct: 330 FNFDVPGHAEDYVHRIGRTGRAGREGKAITI 360
>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 439
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 186/413 (45%), Gaps = 71/413 (17%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
GI++L + + + I + DL + TG+GKT ++ALPI+ L + +RAL
Sbjct: 15 GINALGYTTPTPIQAQAIPKIMAGHDLMGLAQTGTGKTAAFALPILHRLMQGPRKQVRAL 74
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ D L +GQ + I+ + G+ +P+
Sbjct: 75 VIAPTRELAEQINDAM------------LELGQQTRLKSIT-------VYGGVNVNPQ-- 113
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+++L++ V+I+VA PGRL+DHIN L +L LV+DE D++
Sbjct: 114 IEKLKNGVEIVVACPGRLLDHINQGT-IDLTNLELLVLDEADQMFD-------------- 158
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
G L IRR K P R M+ SAT+ + LA+
Sbjct: 159 ------------------MGFLPDIRRI-----LKHLPAQRQT-MLFSATMPAEIRGLAR 194
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L P T + P S+ L LK L+ LL+ + ++FT +
Sbjct: 195 EILRDP---ATVQVDNVAPAATVSHALYPVAQHLKTPLLMQLLKHTDTDSVLIFTRTKHR 251
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
R+ L G ++ G Q+ R + FR G Q+LV++D RG+DV V
Sbjct: 252 AKRVGEQLEKAGYTAASLQ---GNLSQNRRQAAMDGFRNGTYQILVATDIAARGIDVSQV 308
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQKA 409
++V+NYD P + YIHR GRT RA + G FT++ ++ VK ++ L A
Sbjct: 309 SHVINYDIPDTSEAYIHRIGRTGRAARNGDAFTMVTDEDTLMVKAIERTLGAA 361
>gi|154286484|ref|XP_001544037.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|160380603|sp|A6QUM7.1|DBP10_AJECN RecName: Full=ATP-dependent RNA helicase DBP10
gi|150407678|gb|EDN03219.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 900
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 182/400 (45%), Gaps = 39/400 (9%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 65
F V + ++TI L ++D+ + TGSGKT ++ +P+++ L + + + RAL++ P+
Sbjct: 106 FSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPS 165
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ V + L L VG S+ ++ + P
Sbjct: 166 RELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASNP------------------ 207
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DI++ATPGR + H+ L + Y+V DE DRL + L +L S +
Sbjct: 208 ---DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSRQ 263
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGF------KDKPYPRLVKMVLSATLTQDPNKLA 239
A+ LP SL R G++ + K P L + ++ L
Sbjct: 264 TLLFSAT--LPK---SLVEFARAGLQEPILIRLDAESKISPDLQNAFFTVKSSEKEGALL 318
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+ LH + + TGET L E K + K + + +S E I+FT++
Sbjct: 319 HV-LHEVIKIPTGETE-ALKRAKEEVKHSKKRKRSEVTSNSHKESPTEHSTIIFTATKHH 376
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L ++L G + G Q+ R ++ FR+G +LV +D RG+D+ +
Sbjct: 377 VDYLTSILRTSG---FAVSYAYGSLDQTARKIEVQNFRDGITHILVVTDVAARGIDIPIL 433
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 434 SNVINYDFPSQPKIFVHRVGRTARAGKTGWSYSLIRESDT 473
>gi|46581491|ref|YP_012299.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. Hildenborough]
gi|120601341|ref|YP_965741.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris DP4]
gi|387154696|ref|YP_005703632.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris RCH1]
gi|46450913|gb|AAS97559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio
vulgaris str. Hildenborough]
gi|120561570|gb|ABM27314.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
gi|311235140|gb|ADP87994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
Length = 577
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 183/409 (44%), Gaps = 77/409 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G SL PVQ P LF+ RDL + S TGSGKT ++ LP+++ L + A +AL
Sbjct: 56 GWQSLMPVQAHAL-----PYLFDGRDLMVQSRTGSGKTGAFLLPLLERL-DPAEASTQAL 109
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V++PTR+LALQV+ + GL V G G+ Y ++
Sbjct: 110 VLVPTRELALQVEHEARTLFEGTGLRVAAVYG-------------------GVGYGKQN- 149
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
L+ +V TPGR++DH+ R L+ L L DE DR+L +
Sbjct: 150 -DALREGAHFVVGTPGRVLDHL-LRRTMQLDRLRALTFDEADRMLSIGF----------- 196
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
+ +K I+R P R+ + SAT LA
Sbjct: 197 ------------------YPDMKEIQRY--------LPKRRIATCLFSATYPPHVLNLAG 230
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALLQSLGEEKCIVFTSSVE 298
L P L+ ++ + ++ + CESK K L+ LL+ I+F ++
Sbjct: 231 EFLREPQMLSLSHSQVHV---AQTQHMFCESKPMDKDRALIRLLEIENPSSAIIFCNTKA 287
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
+ H + +L FG E S QS R + L+ R +++ LV++D RG+D+
Sbjct: 288 NVHYITAVLQGFG---YNADELSADLSQSKREQVLERLRNNEVRFLVATDVAARGIDIPA 344
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL---LHKDEVKRFKK 404
+++V+ Y+ P ++YIHRAGRT RAG +G +L + K E++R +
Sbjct: 345 LSHVILYEPPEDRESYIHRAGRTGRAGAVGTVISLVDIMQKLELQRIAR 393
>gi|359777418|ref|ZP_09280699.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
gi|359305196|dbj|GAB14528.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
Length = 622
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 186/417 (44%), Gaps = 75/417 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 58
GI S FP+QV +T L RD+ TGSGKT+++A+P+V L+ R R
Sbjct: 21 GIESPFPIQVKTLPDT----LAGRDVLGRGRTGSGKTIAFAIPLVARLAEREAAYFRKPG 76
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LV+ PTR+LA Q+ +A A+GL+ + G IS+ + L AG
Sbjct: 77 RPMGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGG------ISQARQEKALRAG--- 127
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
VDI++A PGRL D I R TLE + V+DE D + A +LP
Sbjct: 128 ------------VDIVIACPGRLEDLIR-QRILTLEAVEVTVLDEADHM---ADLGFLPV 171
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
V +L PS + +++ SATL
Sbjct: 172 VKKLM------------DMTPS-----------------------QGQRLLFSATLDNGV 196
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
+K+ Q L +PL + + + + +E + L+ + L+ L S G + ++F
Sbjct: 197 DKIVQRYLSNPLTHSVDDPQAAVTT-MEHHVLVVNDQTVKKQLIVELAS-GAGRRVLFMR 254
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ +L L G I + G Q+ R + L F G+++VLV++D RG+
Sbjct: 255 TKHHARKLAKTLTDAG---IPAVDLHGNLSQNARDRNLAEFSSGEVRVLVATDVAARGVH 311
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
V+ V V++ D P K Y+HR+GRTARAG G TL ++ +KL++ A D
Sbjct: 312 VDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQTDVRKLMKAAGVD 368
>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
Length = 576
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 187/409 (45%), Gaps = 62/409 (15%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I P L RDL + TG+GKT ++ALP++Q +++ + ALV++PTR+LA+QV
Sbjct: 45 IQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQRIAHGPRQRPTALVLVPTRELAVQV 104
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ + + V LA L G P+ LQ L+ V+++V
Sbjct: 105 SEAVQRYGKELRIGV-LA------------------LYGGQAMGPQ--LQALRRGVEVIV 143
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGR +DH+ + L L +V+DE D +L + L +L+ T + + A+
Sbjct: 144 ATPGRALDHLR-RKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQTALFSAT 202
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
+P S+ R +K + T+ ++P K
Sbjct: 203 --MPPRIASIAR----------------RHLKNPVDVTIAREPVKAGAAP---------- 234
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
R++ + + K L +L + +VF + + LN G
Sbjct: 235 --------RVQQTAYVVARQHKVSALARVLDIATPKSALVFCRTRLEVDEVTAALNGRG- 285
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
+ + G Q R + ++AFR G+ ++LV++D RG+D+ V++V+NYD P+ ++
Sbjct: 286 --YRAEAIHGGMSQVQRDRVMQAFRSGQTELLVATDVAARGLDIPSVSHVINYDLPSSLE 343
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
Y+HR GRT RAG+ G T++ E +R + +++ + ++PS
Sbjct: 344 VYVHRIGRTGRAGREGAAMTIIEPRE-QRLLRAVEQHTKAKITVAAVPS 391
>gi|303313405|ref|XP_003066714.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106376|gb|EER24569.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 805
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 175/399 (43%), Gaps = 68/399 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAP 81
RD+ + TGSGKTL++ +P+++ L + L AL++ PTR+LA+Q+ +V I
Sbjct: 86 RDILGAAKTGSGKTLAFLVPVLENLYRKQWTEYDGLGALILSPTRELAIQIFEVLRKIGR 145
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G S+ +E QE ++ILV TPGR++ H
Sbjct: 146 YHTFSAGLVIGGKSLQEE----------------------QERLGRMNILVCTPGRMLQH 183
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T F +H+ LV+DE DR++ +Q+ + +++ LP +
Sbjct: 184 MDQTAAFDTDHIQMLVLDEADRIMDMGFQSTVDAIVE---------------HLPKERQT 228
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPE 260
M+ SAT T+ + LA+L L P +++ E P
Sbjct: 229 -----------------------MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPA 265
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
L+ + ++ K L + +++ + K +VF SS + + H + I +
Sbjct: 266 SLQQHYVVTPLPEKLDTLWSFIRNTLKSKILVFFSSSKQVRFVYEAFRHM-QPGIPLLHL 324
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q+QS R F K L S+D RG+D V+ V+ D P TYIHR GR
Sbjct: 325 HGRQKQSARIDITSKFSRAKYSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGR 384
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
TAR + GR L E + +L++ + PI I
Sbjct: 385 TARYERDGRAVLFLDPSEE---EGMLKRLEQKKIPIERI 420
>gi|443697896|gb|ELT98171.1| hypothetical protein CAPTEDRAFT_160521 [Capitella teleta]
Length = 548
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 121/438 (27%), Positives = 192/438 (43%), Gaps = 93/438 (21%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDVFAAI 79
RD+ I S TGSGKTL YA+PIV L R R +LV++PTR+LA+Q ++F +
Sbjct: 29 RDVLIKSQTGSGKTLCYAVPIVHLLQKMEPRVSREHGVYSLVIVPTRELAVQSLELFQKL 88
Query: 80 A-PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
P + G +G E S L K ++IL+ TPGRL
Sbjct: 89 TRPFTWIVPGAIMGGEKKKSEKSRLRK---------------------GINILICTPGRL 127
Query: 139 MDHINATRGFTLEHLCYLVVDETDR---LLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
DH+ T L ++ +LV+DE DR LL +Q + ++ + +
Sbjct: 128 ADHLQNTESLGLSNVKWLVIDEADRHVALLEMGFQKDVSQIVDILQ-------------- 173
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
+RG D+ ++LSATL++ +LA + L +P+ + ++
Sbjct: 174 ---------------QRGSADRN-----TLLLSATLSKGVEELACMSLQNPVRVDMVQSD 213
Query: 256 YK---------------LPERLESYKLICESKLKPLYLVALLQ-----SLGEEKCIVFTS 295
K LPE L + ++ SKL+ + L A + S K +VF S
Sbjct: 214 GKSSSDGAAKEIGDAIALPEHLSHHYMVTPSKLRLVTLAAFIMWKCKLSNKRSKVLVFMS 273
Query: 296 SVEST----HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
+ +S T+L ++ + + G Q R++ + F + K +L+ +D +
Sbjct: 274 TQQSVDFHYDLFHTVLGEGETSKLNLFKLHGEMAQKERTQVFQEFSKLKDGLLLCTDVAS 333
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL-QKAD 410
RG+D+ V ++ Y PA Y+HR GRTAR G G L EV K L QK
Sbjct: 334 RGLDMPRVKWIIQYTPPATATDYVHRVGRTARIGGHGNALLFLLPSEVDYIKVLAEQKVK 393
Query: 411 NDSCPIHSIPSSLIESLR 428
+S P+ + +E+LR
Sbjct: 394 IESVPMDDV----LETLR 407
>gi|193676312|ref|XP_001947247.1| PREDICTED: probable ATP-dependent RNA helicase DDX31-like
[Acyrthosiphon pisum]
Length = 642
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 190/422 (45%), Gaps = 75/422 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVR 55
+G++ L VQ +TI +D + S TGSGKT +YA+P++++L
Sbjct: 124 LGVTKLTTVQ----SQTIPVLQSGKDAMVQSETGSGKTFAYAVPLIESLHKIRPKLSRTD 179
Query: 56 CLRALVVLPTRDLALQVKDVFAAI-APAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LRAL++LPTR+LALQ + F + P L G+ G E + ++ GI
Sbjct: 180 GLRALIILPTRELALQTYENFIKLLKPYTWLVPGMFTGGEKRKSE------KARMRKGIT 233
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
IL+ TPGRL+DH T+ + + L +L++DE DR+L Y+ +
Sbjct: 234 ---------------ILIGTPGRLLDHAQNTKSISFKSLQWLIIDEADRMLDLGYEKDIT 278
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
++L + +E+R D+ PR + LSATL++
Sbjct: 279 SILSVV---DEHR----------------------------DESVPRQTAL-LSATLSEG 306
Query: 235 PNKLAQLDLHHPLFL---TTGETRYK---LPERLESYKLICESKLKPLYLVA-LLQSLGE 287
+LA L L P+++ + G T + +P+ L Y ++ KL+ + L LLQ L +
Sbjct: 307 VQRLAGLSLKDPVYIDASSIGSTDSECMAIPDSLLQYYVLAPPKLRLVTLSGVLLQKLQK 366
Query: 288 ----EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
K +VF ++ + LL K + G Q R + K+F+ V
Sbjct: 367 GQISSKTLVFMATQDMVDFYTELLTTVLTCLTMFKLH-GNMTQVERMEVFKSFKAANHGV 425
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
L +D +RG+D+ V+ ++ Y+ P Y+HR GRTAR GQ G L E
Sbjct: 426 LFCTDVASRGLDLPLVDRIIQYNAPITPTDYVHRVGRTARVGQKGEATLFLTPHEAMFIA 485
Query: 404 KL 405
KL
Sbjct: 486 KL 487
>gi|404320397|ref|ZP_10968330.1| DEAD/DEAH box helicase [Ochrobactrum anthropi CTS-325]
Length = 484
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 186/408 (45%), Gaps = 80/408 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G S+ P+Q I P L +D+ + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYSAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV++ F L+V L +G G+ +D ++
Sbjct: 77 LILEPTRELAAQVEENFTKYGVNHRLNVALLIG-------------------GVSFDEQE 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 118 --RKLERGADVLIATPGRLLDHFE--RGKLLLTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERICKLIPFTRQT-LFFSATMPPEITKL 195
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQSLGE--EKCIVF 293
+ LH P + + + + +L+ SK K L L+++ G+ + I+F
Sbjct: 196 TEQFLHSPTRVEVAKASST--AKTVTQRLVKSSKKDWDKRAVLRDLVRAEGDTLKNAIIF 253
Query: 294 TSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
+ + L +L H G Q R L F+EGK+Q+LV+SD R
Sbjct: 254 CNRKKDVSELFRSLTRH----EFNAGALHGDMDQRARMTMLANFKEGKLQLLVASDVAAR 309
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
G+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 310 GLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTK 357
>gi|260655032|ref|ZP_05860520.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
gi|260630347|gb|EEX48541.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
Length = 590
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 182/410 (44%), Gaps = 73/410 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLR 58
G PVQ V +G ++RDL + + TGSGKTL++ LP++ L++R + ++
Sbjct: 24 GFDEPTPVQRGV----LGQDDWDRDLVVQARTGSGKTLAFLLPVLSELASRLFPGRQTVK 79
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
AL++ PTR+LA Q+ A+ VG+ + VG + +IS
Sbjct: 80 ALILSPTRELAQQIAQEAASFGRLVGIGTAVLVGGMDMDRQIS----------------- 122
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
L+S V + V TPGR++DH+ RG L + +V+DE D +L ++ L +L
Sbjct: 123 ----SLRSGVALAVGTPGRVLDHVK--RGTLDLSEIETVVLDEGDTMLDMGFRDELEAIL 176
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
Q + T+L SA + C R F P L+ D
Sbjct: 177 QAASARKR-------TWLFSATIPQEVTAVC---RRFTTNP----------VFLSFDDES 216
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
D+ H +L RY+ LV +L C++F +
Sbjct: 217 SQHSDIVHKAYLVPSSQRYE-------------------GLVNVLLWERPSLCLIFCRTR 257
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
T + L G L + + G Q R+ L +FR G+I VLV+++ RG+DV
Sbjct: 258 SDTAEVTERLQKEGFLAMPLH---GDMSQRERNTALSSFRSGRIPVLVATNVAARGLDVS 314
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
GV++V+ P ++T++HR+GRT RAG G +L E RFK +++
Sbjct: 315 GVSHVIQLGVPESLETFVHRSGRTGRAGHEGTNLLVLTPAESSRFKFMMR 364
>gi|444311371|ref|ZP_21146981.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
gi|443485287|gb|ELT48079.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
Length = 484
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 187/413 (45%), Gaps = 90/413 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV++ FA L+V L +G G+ +D D
Sbjct: 77 LILEPTRELAAQVEENFAKYGINQRLNVALLIG-------------------GVSFD--D 115
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 116 QERKLERGADVLIATPGRLLDHFE--RGKLLLTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERICKLIPFTRQT-LFFSATMPPEITKL 195
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL--------YLVALLQSLGE--E 288
+ LH P TR ++ + + K + + +K L L+++ G+ +
Sbjct: 196 TEQFLHSP-------TRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRDLIRAEGDTLK 248
Query: 289 KCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 347
I+F + + L +L H G Q R L F++GK+Q+LV+S
Sbjct: 249 NAIIFCNRKKDVSELFRSLTRH----EFNAGALHGDMDQRARMTMLSNFKDGKLQLLVAS 304
Query: 348 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
D RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 305 DVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTK 357
>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
Length = 484
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 187/413 (45%), Gaps = 90/413 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV++ FA L+V L +G G+ +D D
Sbjct: 77 LILEPTRELAAQVEENFAKYGINQRLNVALLIG-------------------GVSFD--D 115
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 116 QERKLERGADVLIATPGRLLDHFE--RGKLLLTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERICKLIPFTRQT-LFFSATMPPEITKL 195
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL--------YLVALLQSLGE--E 288
+ LH P TR ++ + + K + + +K L L+++ G+ +
Sbjct: 196 TEQFLHSP-------TRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRDLIRAEGDTLK 248
Query: 289 KCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 347
I+F + + L +L H G Q R L F++GK+Q+LV+S
Sbjct: 249 NAIIFCNRKKDVSELFRSLTRH----EFNAGALHGDMDQRARMTMLSNFKDGKLQLLVAS 304
Query: 348 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
D RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 305 DVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTK 357
>gi|260945072|ref|XP_002616834.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720]
gi|238850483|gb|EEQ39947.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720]
Length = 559
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/427 (28%), Positives = 194/427 (45%), Gaps = 77/427 (18%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV--------------QTLSNRA 53
PVQ A I L RD+ + TGSGKTL++ LP++ + + A
Sbjct: 171 PVQRAA----IPVALRHRDVVGIAETGSGKTLAFLLPLITYIQSIEPEYMKYEHSKEDNA 226
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
R L LV+ PTR+LALQ+ +A +GLSV +G G
Sbjct: 227 NRAL-GLVLAPTRELALQITKEAEKVAGPLGLSVVTIIG-------------------GH 266
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAW 172
Y E+ + L++ V I+VATPGRL+D + RG +LE +L +DE D+++ ++
Sbjct: 267 QY--EETVHSLRNGVHIVVATPGRLVDSLE--RGIVSLEKCYHLTMDEADKMIDMGFEKS 322
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
L +L +LPS+ K+I R F+ + ++ +AT+T
Sbjct: 323 LQAILD---------------YLPSSESLQKSID----SRIFR---VSKRTTLMFTATIT 360
Query: 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL------YLVALLQSLG 286
K+ + L P FL G + + ++ + E ++ LV +L++ G
Sbjct: 361 PAIEKITKQYLIDPAFLYVGGANEVVENISQQFEYMGEETVQDFDEKRFASLVRILKAQG 420
Query: 287 EE-KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 345
+ I+F + + +L L G ++ + G + Q R K +++FR + +L+
Sbjct: 421 HDMSVIIFANFKRTVEQLAEELEGKGFPKVAV--VHGSKTQEAREKAIESFRAKRANILI 478
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL---HKDEVKRF 402
++D RG+DV V+ VVNY + YIHR GRT RAGQ G +T + KD
Sbjct: 479 ATDVAARGLDVPHVSLVVNYHMSKKFEEYIHRIGRTGRAGQKGASYTFVDGGDKDTFPEL 538
Query: 403 KKLLQKA 409
KK L +
Sbjct: 539 KKFLSRG 545
>gi|110834781|ref|YP_693640.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
gi|110647892|emb|CAL17368.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
Length = 422
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/404 (28%), Positives = 185/404 (45%), Gaps = 73/404 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 58
G P+Q V + T+ D + TG+GKT ++ + ++ L + R
Sbjct: 42 GFQYCTPIQAEVLEHTLAGA----DAIGRAQTGTGKTAAFLITVINDLLKHPIDVQRFAG 97
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
AL+V PTR+LA+Q++ + L V VG G+ +
Sbjct: 98 EPRALIVAPTRELAMQIEKDANILTKYTDLQVMSVVG-------------------GMNF 138
Query: 116 DPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+ + + LQ+ +DILVATPGRL+D R L+ + +LV+DE DR+L + +P
Sbjct: 139 NRQQ--ERLQNKLIDILVATPGRLLD-FAKRRDLWLDRVEFLVLDEADRMLDMGF---IP 192
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
V ++ ++++ F + F D M LS TQD
Sbjct: 193 DVKRIVGMTPKSQYRQTQLFSAT----------------FNDDV------MNLSRRWTQD 230
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
A++ P +TT K+ Y + K K LY L+ + +K IVF
Sbjct: 231 ----AEIVEIEPTQVTTDTVEQKV------YITNTDDKFKLLY--NLITGMNMDKVIVFA 278
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ + T R+C L G +K+ SG Q+ RSKTL+ FR G +QVL+++D RG+
Sbjct: 279 NRRDITRRVCDRLQKRG---LKVSLISGDVPQTQRSKTLERFRAGDLQVLIATDVAGRGI 335
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
++GV++VVNY+ P + Y+HR GRT RAG G + +D+
Sbjct: 336 HIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDD 379
>gi|320036344|gb|EFW18283.1| ATP-dependent RNA helicase dbp4 [Coccidioides posadasii str.
Silveira]
Length = 805
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 175/399 (43%), Gaps = 68/399 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAP 81
RD+ + TGSGKTL++ +P+++ L + L AL++ PTR+LA+Q+ +V I
Sbjct: 86 RDILGAAKTGSGKTLAFLVPVLENLYRKQWTEYDGLGALILSPTRELAIQIFEVLRKIGR 145
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G S+ +E QE ++ILV TPGR++ H
Sbjct: 146 YHTFSAGLVIGGKSLQEE----------------------QERLGRMNILVCTPGRMLQH 183
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T F +H+ LV+DE DR++ +Q+ + +++ LP +
Sbjct: 184 MDQTAAFDTDHIQMLVLDEADRIMDMGFQSTVDAIVE---------------HLPKERQT 228
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPE 260
M+ SAT T+ + LA+L L P +++ E P
Sbjct: 229 -----------------------MLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPA 265
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
L+ + ++ K L + +++ + K +VF SS + + H + I +
Sbjct: 266 SLQQHYVVTPLPEKLDTLWSFIRNTLKSKILVFFSSSKQVRFVYEAFRHM-QPGIPLLHL 324
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q+QS R F K L S+D RG+D V+ V+ D P TYIHR GR
Sbjct: 325 HGRQKQSARIDITSKFSRAKYSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGR 384
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
TAR + GR L E + +L++ + PI I
Sbjct: 385 TARYERDGRAVLFLDPSEE---EGMLKRLEQKKIPIERI 420
>gi|295667653|ref|XP_002794376.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286482|gb|EEH42048.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 905
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 183/400 (45%), Gaps = 39/400 (9%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 65
F V + ++TI L ++D+ + TGSGKT ++ +P+++ L + + + RAL++ P+
Sbjct: 102 FSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGARALIMSPS 161
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
R+LALQ V + L L VG S+ ++ + P
Sbjct: 162 RELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGNP------------------ 203
Query: 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DI++ATPGR + H+ L + Y+V DE DRL + A L +L S +
Sbjct: 204 ---DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEILHGLPSSRQ 259
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLA 239
A+ LP SL R G++ + K P L + ++ L
Sbjct: 260 TLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISPDLQNGFFTIKSSEKEGALL 314
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L LH + + TGET + E + + P+ + + +S E I+FT++
Sbjct: 315 HL-LHDIIKIPTGETEAGKRTKEELHNPKKRKRSDPV-VKSHKESPTEHSTIIFTATKHH 372
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L ++L G + G Q+ R ++ FR G +LV +D RG+D+ +
Sbjct: 373 VDYLTSVLRQSG---FAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPIL 429
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 430 SNVINYDFPSQSKIFVHRVGRTARAGRTGWSYSLIRESDA 469
>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
43183]
gi|167700298|gb|EDS16877.1| DEAD/DEAH box helicase [Bacteroides stercoris ATCC 43183]
Length = 372
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 187/403 (46%), Gaps = 74/403 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ---TLSNRAVRCLR 58
G ++ P+QV + I L +D+ + TG+GKT ++A+PI+Q L NR + ++
Sbjct: 20 GYANPTPIQV----KAIPAALTGKDILGCAQTGTGKTAAFAIPIIQHLQVLKNRD-KSIK 74
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
AL++ PTR+LALQ+ + A + G+ G + +++ L K
Sbjct: 75 ALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHK------------- 121
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVL 177
VDILVATPGRL+D +N +G+ L+++ + V+DE DR+L +
Sbjct: 122 --------GVDILVATPGRLLDLMN--QGYIHLDNVRHFVLDEADRMLDMGF-------- 163
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
D LP +T+ F P + + L+ +L + P K
Sbjct: 164 ----------IHDIKRLLPKLPKEKQTL--------FFSATMPDTI-IALTNSLLKQPVK 204
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
+ T + + +E E K K L+++L + +VF+ +
Sbjct: 205 I------------TITPKSSTVDTIEQTIYFVEKKEKSKLLISILHKTEGQSVLVFSRTK 252
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
+ R+ +L+ G I + G + Q+ R L+ F+ GKI+V++++D RG+D+
Sbjct: 253 HNADRIVRVLSKAG---IGSQAIHGNKSQNARQSALENFKTGKIRVMIATDIAARGIDIN 309
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+ V+NYD P +TY+HR GRT RAG LG T ++E K
Sbjct: 310 ELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERK 352
>gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis
HTCC2601]
gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp.
HTCC2601]
Length = 430
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 181/430 (42%), Gaps = 75/430 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL----SNRAVRCL 57
G S P+Q + I L D+ + TG+GKTL++ LP++ L A + +
Sbjct: 21 GFSEPTPIQ----NQAIPLALEGHDVLGLAQTGTGKTLAFGLPLIDGLLAQPGKPAPKTV 76
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+ALV+ PTR+L Q+ D + L VG VG SI +I+ L +
Sbjct: 77 KALVLAPTRELVNQIADSLRQLTDGTKLRVGTVVGGQSINRQINFLSR------------ 124
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
DILVATPGRL+D ++ + L + LV+DE D++L
Sbjct: 125 ---------GTDILVATPGRLIDLMD-RKAVDLSTVRQLVLDEADQMLD----------- 163
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
G + +RR + G PR M+ SAT+ + +
Sbjct: 164 ---------------------MGFIHALRRIAPQLG-----TPRQT-MLFSATMPKQMEE 196
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
L+ L +P + K +++ + KP L LL E +VF +
Sbjct: 197 LSSAYLTNPRRVQVSPP-GKAADKITQSVHFVDKAGKPSKLRELLGRDDESLTLVFARTK 255
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
RL L G G + Q R + +KAFR+G I VLV++D RG+D+
Sbjct: 256 HGAERLMKGLVADG---YNAASIHGNKSQGQRDRAIKAFRDGDINVLVATDVAARGIDIP 312
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 417
GV VVNYD P Y+HR GRTARAG+ G DE ++ +QK P+
Sbjct: 313 GVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQ-IQKLMKIDIPVA 371
Query: 418 S--IPSSLIE 425
S P+ L E
Sbjct: 372 SGDAPTELTE 381
>gi|164656665|ref|XP_001729460.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
gi|159103351|gb|EDP42246.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
Length = 801
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 178/409 (43%), Gaps = 89/409 (21%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLR 58
G + P+Q A ++ L RD+ ++ TGSGKTL++ +P+++ L + L
Sbjct: 67 GFIDMTPIQKA----SLPASLRGRDVLGSARTGSGKTLAFLIPVLERLYRQRWSHTDGLG 122
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
ALVV PTR+LA+Q+ DV +I + S GL +G + E L K
Sbjct: 123 ALVVSPTRELAMQIFDVLRSIGGSHTFSAGLVIGGKDLTHEQDRLRK------------- 169
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++IL+ATPGRL+ H++ T GF +L LV+DE DR+L + L +L+
Sbjct: 170 ---------MNILIATPGRLLQHLDQTVGFDASNLQVLVLDEADRILDMGFANTLNAILE 220
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
LPS+ +L + SAT T+ L
Sbjct: 221 ---------------HLPSSRQTL-----------------------LYSATQTRRVKDL 242
Query: 239 AQLDLHHPLFLTTGE-----------TRYKLPERLESYKLICESKLKPLYLVALLQSLGE 287
A+L L P +T + + P LE + ++ + K L + L S +
Sbjct: 243 ARLSLSDPALITVQDPDATDPTSSSSSSSSTPRHLEQFYMLVDLPRKLDMLFSFLCSHTQ 302
Query: 288 EKCIVFTSS---VESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
K +VF SS V+ H + F +LR + + G Q+Q R K FR K
Sbjct: 303 CKVLVFMSSCRQVQFAHEV------FCKLRPGLPLLALHGKQKQPRRLKIFDEFRRSKHA 356
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
L ++D RG+D V+ VV D P TYIHR GRTAR G+
Sbjct: 357 ALFATDIAARGLDFPAVDWVVQVDVPDSADTYIHRVGRTARYHAHGKAL 405
>gi|385331840|ref|YP_005885791.1| DEAD/DEAH box helicase [Marinobacter adhaerens HP15]
gi|311694990|gb|ADP97863.1| DEAD/DEAH box helicase domain protein [Marinobacter adhaerens HP15]
Length = 427
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 179/406 (44%), Gaps = 74/406 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
+G P+Q ET+ L DL + TG+GKT ++ + +Q+L R
Sbjct: 29 IGFEYCTPIQA----ETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLETPIPEKERF 84
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
R L + PTR+LA+Q+ + G +V VG G+
Sbjct: 85 ASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVG-------------------GM 125
Query: 114 CYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
YD + D LQ VDILVATPGRL+D + + F L+ L L++DE DR+L +
Sbjct: 126 NYDKQRDQLQ--NEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEADRMLDMGF--- 179
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+P V ++ IR+C P ++ SAT
Sbjct: 180 IPDVKRI-------------------------IRKC--------TPKEERQTLLFSATFN 206
Query: 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 292
QD LA + + F+ E K ER+E + K LV L+ EK +V
Sbjct: 207 QDVLNLASMWTSNAEFVEI-EPEQKTAERVEQTVYLVGDDEKLPVLVNFLKRPEVEKALV 265
Query: 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
F + + L L + G +K+ SG Q+ R KTL F++G IQVLV++D R
Sbjct: 266 FANRRDQCRDLEEDLRNQG---VKVALMSGEIAQNKRLKTLDQFKKGSIQVLVATDVAGR 322
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G+ V GV +V NY+ P + Y+HR GRT RAG+ G + +D+
Sbjct: 323 GIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGEDD 368
>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 473
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 206/449 (45%), Gaps = 92/449 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-------SNRA 53
MG S+ P+Q + I L +D+ + TG+GKT +++LP++Q L ++ A
Sbjct: 21 MGYESMTPIQA----QAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPA 76
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
+RALV+LPTR+LA QV A A L + G G+
Sbjct: 77 RHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFG-------------------GM 117
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
P+ + EL+ V++LVATPGRL+DHI A + L + Y+V+DE DR+L + L
Sbjct: 118 DMKPQTL--ELKKGVEVLVATPGRLLDHIEA-KNVVLNQVEYVVLDEADRMLDIGFLPDL 174
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L ++LP + +L + SAT +
Sbjct: 175 QRIL---------------SYLPKSRTTL-----------------------LFSATFSP 196
Query: 234 DPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 290
+ +LA L P+ + ET + +R YK+ + K + ++L+ +
Sbjct: 197 EIKRLAGSYLQDPVTIEVARPNETASTVEQRF--YKVSDDDKR--YAIRSVLKERDIRQA 252
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
+F++S RL L G ++ G + Q R K L+AF+ G++ +LV +D
Sbjct: 253 FIFSNSKLGCARLTRALERDG---LRAGALHGDKSQDERLKALEAFKAGEVDLLVCTDVA 309
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQ 407
RG+D++ V V NYD P + Y+HR GRT RAG G TL+ + V +KL++
Sbjct: 310 ARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLIK 369
Query: 408 KADNDSCPIHSIPSSLIESLRPVYKS-GD 435
K I P+ +++ LRP +S GD
Sbjct: 370 KK------IDVEPAPMLD-LRPPRRSRGD 391
>gi|402487889|ref|ZP_10834704.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
gi|401813057|gb|EJT05404.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
Length = 505
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 123/421 (29%), Positives = 189/421 (44%), Gaps = 99/421 (23%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLALQVKDVFAAI 79
L RD+C + TG+GKT S+ LP++ L RA R R L++ PTR+LA QV + F
Sbjct: 37 LERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKY 96
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
L+V L +G G+ ++ +D ++L+ D+L+ TPGRL+
Sbjct: 97 GKNHRLNVALLIG-------------------GVSFEDQD--RKLERGADVLICTPGRLL 135
Query: 140 DHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
DH RG + + LV+DE DR+L F+P
Sbjct: 136 DHFE--RGKLLMSGVEILVIDEADRMLDMG-------------------------FIPD- 167
Query: 199 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 258
+ER K P+ R + SAT+ + KLA L +P
Sbjct: 168 -----------IERIAKMIPFTRQT-LFFSATMPPEIQKLADRFLQNP------------ 203
Query: 259 PERLESYKLICESKLKPLYLVA--------------LLQSLGEEK-CIVFTSSVESTHRL 303
ER+E K ++ VA L+++ E K I+F + + L
Sbjct: 204 -ERIEVAKPASAAETVTQRFVASHGKDYEKRAVLRELVRAQTELKNAIIFCNRKKDVADL 262
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
L G + G Q R+ TL++FR+G +Q+LV+SD RG+D+ V++V
Sbjct: 263 FRSLERHG---FSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDVAARGLDIPDVSHVF 319
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL-QKADNDSCPIHSI 419
N+D P + + Y+HR GRT RAG+ G FTL+ K + K +KL+ QK + S + S+
Sbjct: 320 NFDVPIHSEDYVHRIGRTGRAGRSGASFTLVTKRDTKFVDAIEKLIGQKVEWLSGDVSSL 379
Query: 420 P 420
P
Sbjct: 380 P 380
>gi|389774439|ref|ZP_10192558.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
gi|388438038|gb|EIL94793.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
Length = 638
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 184/399 (46%), Gaps = 70/399 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G S P+Q A TI P + RD+ + TG+GKT ++ALPI+ + + + +AL
Sbjct: 31 VGYESPSPIQAA----TIPPLMEGRDVLGQAQTGTGKTAAFALPILSRIDLKPGKP-QAL 85
Query: 61 VVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
V+ PTR+LA+QV + F A + GL V G G Y P+
Sbjct: 86 VLAPTRELAIQVAEAFQKYATHMRGLQVLPIYG-------------------GQSYGPQ- 125
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L L+ V ++V TPGR++DH++ L L YLV+DE D +LR + + VLQ
Sbjct: 126 -LHSLKRGVHVVVGTPGRVIDHLDKGT-LDLSELKYLVLDEADEMLRMGFIDDVEKVLQA 183
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
T + A ++ T+ R +R KD V++ + ++ T N
Sbjct: 184 TPPQRQVALFSA---------TMPTVIRKIAQRHLKDP-----VEVTIKSSTTTAAN--- 226
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+H + +G +KL L +L++ + I+F + ++
Sbjct: 227 ---IHQRYWFVSG-----------MHKLDA--------LTRILEAEPFDAMIIFARTKQA 264
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T L L G + +G Q R + ++ ++GK+ +LV++D RG+DVE +
Sbjct: 265 TEELAGKLQARG---LAAAAINGDIAQPQRERVIQQLKDGKLDILVATDVAARGLDVERI 321
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
++V NYD P ++Y+HR GRT RAG+ G + E
Sbjct: 322 SHVFNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRE 360
>gi|409911469|ref|YP_006889934.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
Length = 446
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 174/375 (46%), Gaps = 67/375 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD+ + TG+GKT ++ALPI+ L +RALV+ PTR+LA Q+ D F
Sbjct: 39 RDVMGLAQTGTGKTAAFALPILHRLQQGERGRVRALVIAPTRELAEQINDSF-------- 90
Query: 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144
+ +G+ + ++ + G+ +P+ +Q+L++ +++VA PGRL+DHI A
Sbjct: 91 ----VTLGRQTRLRSVT-------VYGGVGVNPQ--VQKLKAGAEVVVACPGRLLDHI-A 136
Query: 145 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 204
L L LV+DE D++ +LP + ++ + LPS
Sbjct: 137 QGTIDLSRLEVLVLDEADQMFD---MGFLPDIRRVLK------------HLPS------- 174
Query: 205 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 264
R ++ SAT+ D LAQ L P+ + G P +
Sbjct: 175 ----------------RRQTLLFSATMPIDIRALAQEILVDPVTVQVGNV---APAVTVA 215
Query: 265 YKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323
+ L E LK L+ LL+ E ++FT + RL L G + G
Sbjct: 216 HALYPVEQHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAG---YRAASLQGN 272
Query: 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383
Q+ R L FR+G Q+LV++D RG+DV V++V+NYD P + YIHR GRT R
Sbjct: 273 LSQNRRQAALDGFRDGTYQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGR 332
Query: 384 AGQLGRCFTLLHKDE 398
A + G FTL+ D+
Sbjct: 333 AARSGDAFTLVTSDD 347
>gi|119963413|ref|YP_949241.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950272|gb|ABM09183.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 576
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 183/417 (43%), Gaps = 75/417 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 58
GI FP+QV +T L RD+ TGSGKT+++A+P+V L+ R + R
Sbjct: 24 GIEEAFPIQVKTLPDT----LAGRDVLGRGRTGSGKTIAFAIPLVARLAEREAKHFRKPG 79
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LV+ PTR+LA Q+ +A A+GL+ + G IS+ + L AG
Sbjct: 80 RPMGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGG------ISQARQEKALRAG--- 130
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
VDI++A PGRL D I R TLE + V+DE D + A +LP
Sbjct: 131 ------------VDIVIACPGRLEDLIR-QRILTLEAVEVTVLDEADHM---ADLGFLPV 174
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
V +L D + +++ SATL
Sbjct: 175 VKKLM-----------------------------------DMTPTQGQRLLFSATLDNGV 199
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
+KL L +PL + + + + +E + L+ + L+ L S G + ++F
Sbjct: 200 DKLVNRYLSNPLTHSVDDPQAAVTT-MEHHVLVVNDQTVKKQLIVELAS-GAGRRVLFMR 257
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ +L L G I + G Q+ R + L F G ++VLV++D RG+
Sbjct: 258 TKHHARKLAKTLTDAG---IPAVDLHGNLSQNARDRNLAEFSNGDVRVLVATDVAARGVH 314
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
V+ V V++ D P K Y+HR+GRTARAG G TL ++ KKL++ A D
Sbjct: 315 VDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVKKLMKAAGVD 371
>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase [Ochrobactrum anthropi ATCC 49188]
gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
49188]
Length = 498
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 186/408 (45%), Gaps = 80/408 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G S+ P+Q I P L +D+ + TG+GKT S+ LP++ L RA R R
Sbjct: 35 GYSAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 90
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV++ F L+V L +G G+ +D ++
Sbjct: 91 LILEPTRELAAQVEENFTKYGVNHRLNVALLIG-------------------GVSFDEQE 131
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 132 --RKLERGADVLIATPGRLLDHFE--RGKLLLTGVEILVIDEADRMLDMG---------- 177
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 178 ---------------FIPD------------IERICKLIPFTRQT-LFFSATMPPEITKL 209
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQSLGE--EKCIVF 293
+ LH P + + + + +L+ SK K L L+++ G+ + I+F
Sbjct: 210 TEQFLHSPTRVEVAKASST--AKTVTQRLVKSSKKDWDKRAVLRDLVRAEGDTLKNAIIF 267
Query: 294 TSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
+ + L +L H G Q R L F+EGK+Q+LV+SD R
Sbjct: 268 CNRKKDVSELFRSLTRH----EFNAGALHGDMDQRARMTMLANFKEGKLQLLVASDVAAR 323
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
G+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 324 GLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTK 371
>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
Length = 506
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 179/403 (44%), Gaps = 79/403 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G + P+Q I P L RD+ + TG+GKT S+ LP++ L+ RA R R+
Sbjct: 55 GYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARMPRS 110
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA QV + F + L+ L +G G+ + +D
Sbjct: 111 LVLCPTRELAAQVAENFDTYTKHLKLTKALLIG-------------------GVSFKEQD 151
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 152 QL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMG---------- 197
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER F P+ R + SAT+ + ++
Sbjct: 198 ---------------FIPD------------IERIFSLTPFTRQT-LFFSATMAPEIERI 229
Query: 239 AQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE--KC 290
L P + TT E + ++ + E K L L++ G++
Sbjct: 230 TNTFLSAPERVEVARQATTSENIEQSVVMFKASRKDREGSEKRRVLRTLIEQEGDKLTNG 289
Query: 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
I+F + + L +G G QS R+KTL FR+G +++LV+SD
Sbjct: 290 IIFCNRKTDVDIVAKSLKKYG---FDAAPIHGDLDQSQRTKTLDGFRDGSLRILVASDVA 346
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ T+
Sbjct: 347 ARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITI 389
>gi|408787040|ref|ZP_11198773.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
gi|408486993|gb|EKJ95314.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
Length = 498
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 185/405 (45%), Gaps = 74/405 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L+V L +G G+ ++ +D
Sbjct: 77 LILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVSFEDQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERIAKMIPFTRQT-LFFSATMPPEIQKL 195
Query: 239 AQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
A L +P+ + + T + +R+ + K L + + + I+F +
Sbjct: 196 ADRFLQNPVRVEVAKPSSTAKTVAQRIVAAHNKDYEKRAVLRDLVRAEEAELKNAIIFCN 255
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ L L+ G + G Q R+ L+ F++G +++LV+SD RG+D
Sbjct: 256 RKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFKDGNLKLLVASDVAARGLD 312
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + + K
Sbjct: 313 IPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTRSDTK 357
>gi|327272752|ref|XP_003221148.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
[Anolis carolinensis]
Length = 399
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 171/398 (42%), Gaps = 112/398 (28%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ V E+I L RD+ + TGSGKT ++ALPI+Q L R ALV+ PTR+
Sbjct: 39 PTKIQV--ESIPLALQGRDIIGLAETGSGKTGAFALPILQALLETPQRFF-ALVLTPTRE 95
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 96 LAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKP-------------------- 135
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 136 -HVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 192
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L P+
Sbjct: 193 -----TFL-------------------------------FSATMTKKVQKLQRAALKDPV 216
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 217 KCAVS-SKYQTVEKLQQYYVFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLL 275
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + + +N D
Sbjct: 276 RNLGFTAIPL------------------------------------------HGQMNQD- 292
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 293 ------YIHRVGRTARAGRSGKSITFVTQYDVELFQRI 324
>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424913801|ref|ZP_18337165.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392849977|gb|EJB02498.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 505
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 191/424 (45%), Gaps = 99/424 (23%)
Query: 21 GLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLALQVKDVFAA 78
L RD+C + TG+GKT S+ LP++ L RA R R L++ PTR+LA QV + F
Sbjct: 36 ALERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLILEPTRELAAQVAENFEK 95
Query: 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
L+V L +G G+ ++ +D ++L+ D+L+ TPGRL
Sbjct: 96 YGKNHRLNVALLIG-------------------GVSFEDQD--RKLERGADVLICTPGRL 134
Query: 139 MDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 197
+DH RG + + LV+DE DR+L F+P
Sbjct: 135 LDHFE--RGKLLMSGVEILVIDEADRMLDMG-------------------------FIPD 167
Query: 198 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 257
+ER K P+ R + SAT+ + KLA L +P
Sbjct: 168 ------------IERIAKMIPFTRQT-LFFSATMPPEIQKLADRFLQNP----------- 203
Query: 258 LPERLESYKLICESKLKPLYLVA--------------LLQSLGEEK-CIVFTSSVESTHR 302
ER+E K +K VA L+++ E K I+F + +
Sbjct: 204 --ERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQTELKNAIIFCNRKKDVAD 261
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L G + G Q R+ TL++FR+G +Q+LV+SD RG+D+ V++V
Sbjct: 262 LFRSLERHG---FSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDVAARGLDIPDVSHV 318
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLL-QKADNDSCPIHS 418
N+D P + + Y+HR GRT RAG+ G FTL+ K + V +KL+ +K + S ++S
Sbjct: 319 FNFDVPIHSEDYVHRIGRTGRAGRSGASFTLVTKRDSKFVDAIEKLIGEKVEWLSGDVNS 378
Query: 419 IPSS 422
+P +
Sbjct: 379 LPPA 382
>gi|356522085|ref|XP_003529680.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Glycine
max]
Length = 701
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 200/442 (45%), Gaps = 61/442 (13%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ ++ +
Sbjct: 300 GYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEA 355
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q++D A +G+ V VG SI E G
Sbjct: 356 EGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIE------------EQGF- 402
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+++ +I++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 403 --------KIRQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVM 453
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL DA +PS+ ++ + +K R M SAT+
Sbjct: 454 GVL------------DA---MPSS-----NLKPENEDEELDEKKIYRTTYM-FSATMPPA 492
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL L ++ IVF
Sbjct: 493 VERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKEAEKFYKLQRLLDELNDKTAIVFV 551
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ + + L+ G ++ G + Q R +L+ FR + VLV++D RG+
Sbjct: 552 NTKRNADHVAKSLDKEG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 608
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 414
D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F L Q +
Sbjct: 609 DIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNS 668
Query: 415 PIHSIPSSLIESLRPVYKSGDV 436
P +P L +K G +
Sbjct: 669 P---VPPELARHEASKFKPGTI 687
>gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Ogataea parapolymorpha
DL-1]
Length = 752
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 183/403 (45%), Gaps = 71/403 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCLRA 59
+G + P+Q E + + DL + TGSGKTL++ LP+ Q L+N A +RA
Sbjct: 208 LGFEAPTPIQC----EALPNVMSGHDLIGIAKTGSGKTLAFLLPLFRQLLANPAAPSVRA 263
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA+Q+ + + A+ L G SI+ +I+E+ K
Sbjct: 264 LVMTPTRELAMQIFNESSVFLEALKLRGCCCYGGQSISQQIAEIKK-------------- 309
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG--FTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
D++V TPGR++D + A G L H+ YLV+DE DR+ ++ + +L
Sbjct: 310 -------GCDLVVGTPGRIIDLLCANNGRVLRLSHVTYLVLDEADRMFDMGFEPQVMKIL 362
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
++TR D + ++ SAT
Sbjct: 363 KVTRPDRQT--------------------------------------VLFSATFPPRMEA 384
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALLQSLGEEKCIVFTS 295
LA+ L P+ + G + ++ ++++ E + + L ++A QS K ++F
Sbjct: 385 LARRCLTDPVEVLVGAKNLVNDKIMQQFEILDEEQKFGRLLQVLARFQSSDSGKILIFVD 444
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+S L L G + + G + Q R + F+ I +LV++ +RG+D
Sbjct: 445 KQDSCDSLANQLIIRGYPTLSLH---GGKEQIDRDGIISDFKSNVIDILVATSVASRGLD 501
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
V+ +N VVNYD P +++ Y+HR GRT RAG+ G T + + +
Sbjct: 502 VKDLNLVVNYDSPNHMEDYVHRVGRTGRAGRSGTAVTFVTRHQ 544
>gi|346972935|gb|EGY16387.1| ATP-dependent RNA helicase dbp6 [Verticillium dahliae VdLs.17]
Length = 775
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 141/291 (48%), Gaps = 80/291 (27%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG- 84
DL + + TGSGKTL+YALPIV+ +S V LRALVVLPTR+L Q ++VF A A
Sbjct: 255 DLLVAAATGSGKTLAYALPIVRDISQGQVTRLRALVVLPTRELVNQAQEVFQLCAAAFDA 314
Query: 85 -----LSVGLAVGQSSIADEISELIKRPKLEAGICYDPE--------------------- 118
+ +G+++G + ++ + L+++ + YDPE
Sbjct: 315 RDQKRVRIGISIGSHQLKNDQANLVEQTER-----YDPEAYADAVKRDREAWTTLEDADA 369
Query: 119 ---------------DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163
D + + S VD+L+ TPGRL+DHIN T GFTL+++ +LVVDE D+
Sbjct: 370 EGGPQASRPVMGNLPDHVVDYNSKVDVLICTPGRLVDHINHTPGFTLDYVRWLVVDEADK 429
Query: 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 223
LL +++Q WL V+ R+ N+FS R F D +
Sbjct: 430 LLAQSFQGWLDVVMPKLRT---NKFS---------------------ARDFPDSNLTGVR 465
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFL---------TTGETRYKLPERLESY 265
K+VLSATLT+D + L L L P + TT + LP L+ +
Sbjct: 466 KVVLSATLTRDLSLLGSLQLRRPQLIVLEGGKADGTTQVAEHTLPSSLKEF 516
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 57/92 (61%)
Query: 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 376
I + Q+ S R + L +F G +++LV+SD + RG+D+ ++NVVNYD PA Y+H
Sbjct: 633 IGTLTSTQKTSHRRRVLASFTTGTLRILVASDLVARGIDLPALDNVVNYDLPASAAGYVH 692
Query: 377 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
R GRTARAG+ GR FTL+ E F + K
Sbjct: 693 RVGRTARAGRQGRAFTLVETRESGWFWGAVAK 724
>gi|237841945|ref|XP_002370270.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|211967934|gb|EEB03130.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|221482742|gb|EEE21080.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
gi|221503065|gb|EEE28771.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 698
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 183/418 (43%), Gaps = 68/418 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P+QV T L +++C +PTGSGKTL Y P++Q + LV+LP R+
Sbjct: 281 PIQVLSLPHT----LRGKNVCGLAPTGSGKTLGYCWPLLQRIGRGDGHAFMGLVLLPARE 336
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA+QV D F +G+ V L +G + +E L + P
Sbjct: 337 LAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQCPH------------------- 377
Query: 128 VDILVATPGRLMDHINATRGFTLEHLC---YLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
I++ATPGR+ DH+ + L LV+DE DRLL + ++ L T+L + +
Sbjct: 378 --IVIATPGRMSDHVQNDPLRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTSS 435
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+ R T L SA S + ++R F D P ++ A T P
Sbjct: 436 QGR----QTLLFSATVSPALL---ALQRRFGDDAMP-----LVDAHPTDQP--------- 474
Query: 245 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG---EEKCIVFTSSVESTH 301
LP L + + ++++P+YL+ LL+ ++ IVF SV T
Sbjct: 475 ------------ALPN-LSHFYMFVPTRMQPIYLLYLLEHTSPFCSDRGIVFAGSVRQTQ 521
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
++CT L L+ L Q R L+ FR ++L+ +D RG+D+ V
Sbjct: 522 QICTALE---ILKQSATPLHSLMEQRKRVACLEKFRSETSRLLICTDVAGRGLDLPRVEF 578
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
V+N P + Y+HR GRTARAG+ G T + V+ ++ + P+ SI
Sbjct: 579 VINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPKSVRAVHRIEALINTQLQPLPSI 636
>gi|156049233|ref|XP_001590583.1| hypothetical protein SS1G_08323 [Sclerotinia sclerotiorum 1980]
gi|160380617|sp|A7ESL8.1|DBP4_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp4
gi|154692722|gb|EDN92460.1| hypothetical protein SS1G_08323 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 808
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 185/420 (44%), Gaps = 68/420 (16%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRAL 60
+S F V + + L +D+ + TGSGKTL++ +P+++ L + + L AL
Sbjct: 66 ASHFKTLTDVQSKAVPLALKGKDILGAAKTGSGKTLAFLVPVLENLYRQKWTELDGLGAL 125
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA+Q+ +V I S GL +G S+ +E L +
Sbjct: 126 IISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGRSLQEERERLGR--------------- 170
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++ILV TPGR++ H++ T F +++L LV+DE DR++ +Q + +L+
Sbjct: 171 -------MNILVCTPGRMLQHMDQTAAFDVDNLQMLVLDEADRIMDMGFQTSVDAILE-- 221
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
LP + M+ SAT T+ + LA+
Sbjct: 222 -------------HLPKQRQT-----------------------MLFSATQTKKVSDLAR 245
Query: 241 LDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L L P ++ E P L+ + + K L +++ + K IVF SS +
Sbjct: 246 LSLKEPEYVAVHEAASSATPTTLQQHYCVVPLPEKLNTLFGFIRANLKAKIIVFMSSGKQ 305
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+ L H + I + G Q+Q+ R F K + ++D + RG+D V
Sbjct: 306 VRFVYESLRHL-QPGIPLLHLHGRQKQTARLDITSKFSSSKNSCIFATDVVARGLDFPAV 364
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
+ V+ D P TYIHR GRTAR G++GR L E + +L++ ++ PI I
Sbjct: 365 DWVIQLDCPEDADTYIHRVGRTARYGKVGRAVLFLDPSEE---EGMLKRLEHKKVPIQKI 421
>gi|417332448|ref|ZP_12116332.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Alachua str. R6-377]
gi|353581688|gb|EHC42550.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Alachua str. R6-377]
Length = 412
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 184/413 (44%), Gaps = 83/413 (20%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALP------------IVQTLSNRAVRCLRAL 60
+ Q+ I L RDL ++ TG+GKT + LP I + R +RAL
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPGGVFTLPLLQHLITHQPHAKGRRPVRAL 86
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA Q+ G V S I L+ + G+ +P+
Sbjct: 87 ILTPTRELAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ-- 125
Query: 121 LQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ +L+ VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRML------------- 169
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
G + IRR P R ++ SAT + D L
Sbjct: 170 -------------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKAL 204
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
A+ L +PL + R E++ + + K K L ++ ++ +VFT +
Sbjct: 205 AEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKH 263
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
+ L LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E
Sbjct: 264 GANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEE 320
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ +VVNY+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 373
>gi|372272242|ref|ZP_09508290.1| ATP-dependent RNA helicase RhlB, partial [Marinobacterium stanieri
S30]
Length = 599
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 174/392 (44%), Gaps = 72/392 (18%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALV 61
P+Q A TI L RDL + TG+GKT ++ + I+ L + + RAL+
Sbjct: 82 PIQAA----TIPHALNGRDLIGKAQTGTGKTAAFLIGIITDLLDFPLPGEPRKNEPRALI 137
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LALQ+ ++ LSV VG + L +P
Sbjct: 138 IAPTRELALQIASDAEGLSAHADLSVVSLVGGMDYERQRKALAAKP-------------- 183
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
VDILVATPGRL+D + ++ L + LV+DE DR+L
Sbjct: 184 ------VDILVATPGRLIDFVR-SKEVDLYQVEVLVLDEADRML---------------- 220
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
+ F+P ++ R G +R ++ SAT T D +LA+
Sbjct: 221 ---------SMGFIPDVRTIIRQTPRKGADRQ----------TLLYSATFTDDVMRLAEQ 261
Query: 242 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301
P+ + E+ +K + + + S K L L+ G E+ IVF + T
Sbjct: 262 WTQDPVTIEI-ESEHKTTDNVAQKVFLVSSNEKYQLLRNYLRINGIERAIVFGNRRHETR 320
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
L L+ G IK SG Q+ R +TL+ FR GKI+VLV++D RG+ ++GV +
Sbjct: 321 ALADRLSKDG---IKAALMSGEIPQNKRLRTLEDFRNGKIEVLVATDVAGRGIHIDGVTH 377
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGR--CF 391
V+NY P Y+HR GRT RAG G CF
Sbjct: 378 VINYQLPEDADDYVHRIGRTGRAGATGTSICF 409
>gi|291001779|ref|XP_002683456.1| dead box RNA helicase [Naegleria gruberi]
gi|284097085|gb|EFC50712.1| dead box RNA helicase [Naegleria gruberi]
Length = 907
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/387 (28%), Positives = 179/387 (46%), Gaps = 66/387 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLA 69
+ + +I L RD+ + TGSGKTL++ LP+++ L + + L AL++ P R+LA
Sbjct: 81 IQKASILHALGGRDILGAARTGSGKTLAFVLPVLELLYRKRWGKLDGLGALILSPNRELA 140
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 129
Q+ +V S GL VG + E E IC ++
Sbjct: 141 QQIFEVLKLCGRYHHFSAGLLVGGTKNLKEEKE---------HIC------------NMN 179
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
ILVATPGRL+ H++ T GF +L LV+DE DRLL ++ L ++L
Sbjct: 180 ILVATPGRLLQHMDETAGFICSNLQVLVLDEADRLLELGFRNELNSILD----------- 228
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH--HPL 247
LP + +L + SAT T+D LA+L L +
Sbjct: 229 ----GLPKSRQTL-----------------------LFSATQTRDIKDLARLSLSKTNTE 261
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
+++ E+ +P++L + + C+ + K L + L+S +K IVF+S+V+ L T+
Sbjct: 262 YISVHESE-PVPKQLTQHYIECQLEDKIDILFSFLKSHQNKKVIVFSSTVKQVSFLHTVF 320
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
H L +K+ + +G Q R + + F K VL ++D RG+D V+ V+ D
Sbjct: 321 KHLP-LSVKMFKLAGRMSQGSRREMFEGFTSAKAAVLFATDIAARGLDFPRVDFVLQLDA 379
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLL 394
P YIHR GRTAR G+ ++
Sbjct: 380 PVSKAFYIHRMGRTARNDADGKSVVVV 406
>gi|424887777|ref|ZP_18311380.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173326|gb|EJC73370.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 505
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 177/398 (44%), Gaps = 95/398 (23%)
Query: 21 GLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLALQVKDVFAA 78
L RD+C + TG+GKT S+ LP++ L RA R R L++ PTR+LA QV + F
Sbjct: 36 ALERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLILEPTRELAAQVAENFEK 95
Query: 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
L+V L +G G+ ++ +D ++L+ D+L+ TPGRL
Sbjct: 96 YGKNHRLNVALLIG-------------------GVSFEDQD--RKLERGADVLICTPGRL 134
Query: 139 MDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 197
+DH RG + + LV+DE DR+L F+P
Sbjct: 135 LDHFE--RGKLLMSGVEILVIDEADRMLDMG-------------------------FIPD 167
Query: 198 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 257
+ER K P+ R + SAT+ + KLA L +P
Sbjct: 168 ------------IERIAKMIPFTRQT-LFFSATMPPEIQKLADRFLQNP----------- 203
Query: 258 LPERLESYKLICESKLKPLYLVA--------------LLQSLGEEK-CIVFTSSVESTHR 302
ER+E K +K VA L+++ E K I+F + +
Sbjct: 204 --ERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQTELKNAIIFCNRKKDVAD 261
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L G + G Q R+ TL++FR+G +Q+LV+SD RG+D+ V++V
Sbjct: 262 LFRSLERHG---FSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDVAARGLDIPDVSHV 318
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
N+D P + + Y+HR GRT RAG+ G FTL+ K + K
Sbjct: 319 FNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDSK 356
>gi|117619806|ref|YP_855172.1| DEAD/DEAH box helicase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561213|gb|ABK38161.1| ATP-dependent RNA helicase, dead box family [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 406
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 174/381 (45%), Gaps = 65/381 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V Q I L RDL + TGSGKTL++ LP++Q L + R ++ LV++PTR+LA+QV
Sbjct: 26 VQQLAIPAALAGRDLLALARTGSGKTLAFGLPLLQRLDPASDR-VQGLVLVPTRELAVQV 84
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
+ A +GL + G + A + +EL P+L LV
Sbjct: 85 SEALQGPAAGLGLRLVTLCGGVAQALQQAELALGPQL---------------------LV 123
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL D + A + L L +LV+DE DRLL + W L E + S
Sbjct: 124 ATPGRLRDLL-AQQLLGLSQLRHLVLDEADRLLEMGF--WPDIQWLLNAMPVERQTLLFS 180
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
LP+ +L T G +P + DP D+ L+L
Sbjct: 181 ATLPAELDALAT--------GLLTEPV----------RVEADPRNSVADDIEERLYLVNK 222
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+ K+P L++LL++ + +VF S+ + + L G
Sbjct: 223 SS--KVP-----------------ALISLLKAHEWPQVLVFISARDDADGVARKLAKAG- 262
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G + Q+VR + L F+ GK++VLV++D M RG+ VE + V+N D PA
Sbjct: 263 --ITVAALHGEKEQAVREQALGDFKAGKVRVLVATDLMARGIHVEALPLVINLDLPASAP 320
Query: 373 TYIHRAGRTARAGQLGRCFTL 393
Y+HR GRTARAG+ G +L
Sbjct: 321 VYVHRIGRTARAGRSGLAISL 341
>gi|417473577|ref|ZP_12168940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|353650489|gb|EHC92837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
Length = 467
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 190/411 (46%), Gaps = 72/411 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIAHQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L + + VL + +
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQ 182
Query: 186 N-----RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
N FSD L + K +R C R +K K
Sbjct: 183 NLLFSATFSDDIKAL-----AEKLLRNCCATR-WKSKWL--------------------- 215
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L +PL + R E++ + + K K L ++ ++ +VFT +
Sbjct: 216 --LRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGA 272
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
+ L LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E +
Sbjct: 273 NHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELP 329
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+VVNY+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 330 HVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 380
>gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
DSM 44385]
Length = 558
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 182/415 (43%), Gaps = 65/415 (15%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RC 56
GI+ F +Q + T+ L +DL + TG GKTL+Y +P++ + + A
Sbjct: 111 GITHTFAIQ----ELTLPLALDGKDLIGQARTGMGKTLAYGVPLLDRIFDDAAIPELDGT 166
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
RALVV PTR+LA QV D + LA + +E ++ + G +
Sbjct: 167 PRALVVAPTRELAYQVAD-----------DLTLAARHLANFNEEHRSLRVTTICGGHPF- 214
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
E + +L+ D +V TPGRL+D + R L H+ LV+DE D +L
Sbjct: 215 -EKQIAQLREGTDCIVGTPGRLLD-LCKNRELNLSHVAVLVLDEADEMLDLG-------- 264
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
FLP +E+ + P R ++ SAT+
Sbjct: 265 -----------------FLPD------------IEKILQQVPEKRQT-ILFSATMPAPIM 294
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL-YLVALLQSLGEEKCIVFTS 295
LA+ ++ P+ + T KL L L A+LQ+ + I+FT
Sbjct: 295 ALARTFMNKPVHIRAEGTDDSTTHTTTKQVAFKNHKLNKLATLSAILQAHNRGRTIIFTR 354
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ S + L G L + G Q R K+L AFR KI++LV++D RG+D
Sbjct: 355 TKRSAADVADDLAQRGFL---VGAVHGDMAQPAREKSLNAFRSKKIEILVATDVAARGID 411
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 410
V+ V +V+NY P TY+HR GRT RAG G TL+ DEV ++K + + D
Sbjct: 412 VDDVTHVINYQVPDDAMTYVHRIGRTGRAGHTGTAVTLVGWDEVTKWKVIDDELD 466
>gi|429085612|ref|ZP_19148582.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
gi|426545220|emb|CCJ74623.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
Length = 474
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 179/390 (45%), Gaps = 72/390 (18%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLS----NRAVRCLRALVVLPTRDLALQVKDVFA 77
L +DL ++ TG+GKT + LP++Q L+ + R +RAL++ PTR+LA QV
Sbjct: 36 LSGKDLMASAQTGTGKTAGFTLPLLQRLTANEPQKGRRPVRALILTPTRELAAQV----- 90
Query: 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 137
G V + S +I L+ + G+ +P+ + +L+ VD+L+ATPGR
Sbjct: 91 ----------GENVREYSKYLDIRSLV----VFGGVSINPQ--MMKLRGGVDVLIATPGR 134
Query: 138 LMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
L+D H NA + L+ + LV+DE DR+L
Sbjct: 135 LLDLEHQNAVK---LDQVEVLVLDEADRML------------------------------ 161
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255
G + IRR K P+ ++ SAT + D LA+ L +P + R
Sbjct: 162 --DMGFIHDIRRVLA------KLPPKRQNLLFSATFSDDIKGLAEKLLRNPEEVAVAR-R 212
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 315
++ + + K K L L+ ++ +VFT + + L LN G I
Sbjct: 213 NTASGQVTQHVHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDG---I 269
Query: 316 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 375
G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY+ P + Y+
Sbjct: 270 TAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYV 329
Query: 376 HRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
HR GRT RA G +L+ DE K + +
Sbjct: 330 HRIGRTGRAAATGEALSLVCVDEHKLLRDI 359
>gi|145300503|ref|YP_001143344.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362888|ref|ZP_12963506.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853275|gb|ABO91596.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356685894|gb|EHI50513.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 407
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 186/434 (42%), Gaps = 73/434 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVL 63
F + Q + P L RD+ ++PTG+GKT ++ LP +Q L + R R L++
Sbjct: 23 FTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFVLPALQHLLDFPRRKPGPCRMLILT 82
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LALQV A+A LS+ +G G+ + E+ L
Sbjct: 83 PTRELALQVTAHAKALAVHTNLSIETIIG-------------------GVSH--EEQLPA 121
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
L DI+VATPGRL+++I+ F + LV+DE DR+L
Sbjct: 122 LTKTTDIVVATPGRLLEYIDKEE-FESHDIEVLVLDEADRML------------------ 162
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT-QDPNKLAQLD 242
G +K + R E ++ M+ SATL K A
Sbjct: 163 --------------DMGFVKDVNRIVAEARYRKH------TMLFSATLEGAGLEKFANEI 202
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L+ P+ L R + + L ++ K L+ +L+ +K IVF V + R
Sbjct: 203 LNEPVELHAEPPRSERRPITQWVHLADDAAHKLALLIHILKDPETQKAIVF---VRTRER 259
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L I G QS R ++++ F G++ LV++D RG+D+ V++V
Sbjct: 260 LAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHAGEVPFLVATDVAARGIDLPNVSHV 319
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS 422
+NYD P Y+HR GRT RAG G +L+ ++ K+ + + +
Sbjct: 320 INYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMGMVAKIERYTEE------RLKRR 373
Query: 423 LIESLRPVYKSGDV 436
+I+ LRP +K V
Sbjct: 374 VIDELRPKHKEARV 387
>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
Length = 416
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 189/404 (46%), Gaps = 82/404 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCL 57
MG S P QV E I L RD+ ++PTG+GKT ++A+P +Q L + R
Sbjct: 21 MGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFPRRKPGPA 76
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-D 116
R L++ PTR+LA+QV + A+A L++ G G+ Y +
Sbjct: 77 RILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------------GVQYQE 117
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L + PTV
Sbjct: 118 HADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRMLDMGFG---PTV 170
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
+L+ E R+ T L SA T+ GVE GF +A L +DP
Sbjct: 171 DRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF-------------TADLLKDP- 206
Query: 237 KLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 291
A +D P +++ +P ++E K I + E+ I
Sbjct: 207 --AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQA--------------ERSI 250
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
VF + E RL L + +I G Q R+ + FREG + +L+++D
Sbjct: 251 VFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAA 307
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 308 RGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
Length = 557
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 182/402 (45%), Gaps = 78/402 (19%)
Query: 4 SSLFPVQV-AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR----CLR 58
S+ P+Q AV Q G RDL + TG+GKT ++ALPI+ L + +R R
Sbjct: 28 STPTPIQAQAVPQVLAG-----RDLVGIAQTGTGKTAAFALPILHHLVTKRLRPERRSAR 82
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
ALV+ PTR+L+ Q+ + F V S LA+G I +
Sbjct: 83 ALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQA------------------ 124
Query: 119 DVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
+ L VD+LVATPGRL+D NA R L+ + V+DE D++L + + ++
Sbjct: 125 ---RSLAGGVDVLVATPGRLVDLLENNAVR---LDMVEVFVLDEADQMLDMGFIHAIRSI 178
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
+ N F A+ PR ++ L+ TL DP
Sbjct: 179 VARLPHKRRNLFFSAT--------------------------MPREIEK-LADTLLSDPV 211
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
++A + K +++E + KP LV +L ++ +VF+ +
Sbjct: 212 RVAVTPV------------AKTADKIEQKVFFTDRAGKPNLLVEVLGEPTLDRALVFSRT 259
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
R+ L G I + G + Q R + L AFR+G ++VLV++D RG+DV
Sbjct: 260 KHGADRVVKSLAGAG---INAEAIHGNKSQPQRERALAAFRQGVVKVLVATDIAARGIDV 316
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GV++V+NYD P ++Y+HR GRTARAG+ G + +E
Sbjct: 317 PGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEE 358
>gi|116672314|ref|YP_833247.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116612423|gb|ABK05147.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
Length = 635
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 185/414 (44%), Gaps = 75/414 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 58
GI+ FP+QV +T L RD+ TGSGKT+++A+P+V L+ R + R
Sbjct: 21 GITEPFPIQVKTLPDT----LAGRDVLGRGRTGSGKTIAFAIPLVARLAEREAKHFRKPG 76
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LV+ PTR+LA Q+ +A A+GL+ + G IS+ + L AG
Sbjct: 77 RPMGLVLAPTRELATQINATIEPMAKAMGLNTTVIYGG------ISQARQEKALRAG--- 127
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
VDI++A PGRL D I R TLE + V+DE D + A +LP
Sbjct: 128 ------------VDIVIACPGRLEDLIR-QRILTLEAVEVTVLDEADHM---ADLGFLPV 171
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
V +L PS + +++ SATL
Sbjct: 172 VKKLM------------DMTPS-----------------------QGQRLLFSATLDNGV 196
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
+K+ Q L +PL + + + + +E + L+ + L+ L S G + ++F
Sbjct: 197 DKIVQRYLSNPLTHSVDDPQAAVTT-MEHHVLVVNDQTVKKQLIVELAS-GAGRRVLFMR 254
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ +L L G I + G Q+ R + L F G ++VLV++D RG+
Sbjct: 255 TKHHARKLAKTLTDAG---IPAVDLHGNLSQNARDRNLAEFSSGDVRVLVATDVAARGVH 311
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
V+ V V++ D P K Y+HR+GRTARAG G TL ++ KKL++ A
Sbjct: 312 VDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVKKLMKAA 365
>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 521
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 176/396 (44%), Gaps = 93/396 (23%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLALQVKDVFAAI 79
L RD+C + TG+GKT S+ LP++ L RA R R L++ PTR+LA QV + F
Sbjct: 43 LERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKY 102
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
L+V L +G G+ ++ +D ++L+ D+L+ TPGRL+
Sbjct: 103 GKNHRLNVALLIG-------------------GVSFEDQD--RKLERGADVLICTPGRLL 141
Query: 140 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 199
DH + + + LV+DE DR+L F+P
Sbjct: 142 DHFERGK-LLMSGVEILVIDEADRMLDMG-------------------------FIPD-- 173
Query: 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 259
+ER K P+ R + SAT+ + KLA L +P
Sbjct: 174 ----------IERIAKMIPFTRQT-LFFSATMPSEIQKLADRFLQNP------------- 209
Query: 260 ERLESYKLICESKLKPLYLVA--------------LLQSLGEEK-CIVFTSSVESTHRLC 304
ER+E K ++ VA L+++ E K IVF + + L
Sbjct: 210 ERIEVAKPASAAETVTQRFVASHGKDYEKRAVLRELVRAQTELKNAIVFCNRKKDVADLF 269
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L G + G Q R+ TL++FR+G +Q+LV+SD RG+D+ V++V N
Sbjct: 270 RSLERHG---FSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDVAARGLDIPDVSHVFN 326
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+D P + + Y+HR GRT RAG+ G FTL+ K + K
Sbjct: 327 FDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTK 362
>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
Length = 952
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/424 (27%), Positives = 181/424 (42%), Gaps = 91/424 (21%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRA 59
MG + P+Q +G D+ + TGSGKT ++ +P++QTL + V RA
Sbjct: 41 MGYNQPTPIQRKAIPVILGGS----DVVAMARTGSGKTAAFVIPMIQTLKGHSEVVGARA 96
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
+++ PTR+LA+Q V + L + L VG S+ + L P
Sbjct: 97 VILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNP------------ 144
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
D+L+ TPGRL+ H+ +L+ + Y+V DE DRL + + T+L+
Sbjct: 145 ---------DVLICTPGRLVHHM-VEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKA 194
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
T + A+ LPS L R G L D +
Sbjct: 195 TPPSRQCLLFSAT--LPS---QLTQFSRAG---------------------LRSDSTEFI 228
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL---QSLGEE-------- 288
+LD+ H + T L+ + L + KP L++LL QS+G
Sbjct: 229 RLDVEHTISDT-----------LDLWFLYTTADSKPAALISLLRKLQSMGNANADSSTAV 277
Query: 289 -------------KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
K IVF ++ + +LL G I G Q+ R+ +L
Sbjct: 278 VAAGKGGKKARSPKTIVFVATRHNVEFFASLLTQVG---ITNAPIYGSMDQTQRTSSLSK 334
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
FR GK VL+ +D RG+D+ ++ V+NYD P+ K ++HR GRTARAG G C +L+
Sbjct: 335 FRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARAGAKGLCASLVT 394
Query: 396 KDEV 399
D++
Sbjct: 395 HDDM 398
>gi|299530392|ref|ZP_07043815.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
gi|298721617|gb|EFI62551.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
Length = 430
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/423 (28%), Positives = 184/423 (43%), Gaps = 91/423 (21%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------V 54
+G+ P+Q E I L RDL +PTGSGKT++Y LP++Q + V
Sbjct: 19 LGLRDATPIQT----EAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQKRGHTGFV 74
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK---LEA 111
R L L+++PTR+LALQV + S+ D +L ++P+ +
Sbjct: 75 RPLATLILVPTRELALQVHE--------------------SLNDITRQLREQPRSRVVYG 114
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAY 169
G+ +P+ + +L+ + D LVATPGRL+D + NA R ++H LV+DE DRLL + +
Sbjct: 115 GVSINPQ--MMQLRGSADFLVATPGRLLDLVEHNAVRLNAVQH---LVLDEADRLLDQGF 169
Query: 170 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
L VL L LP+ +L +LSA
Sbjct: 170 AEELNRVLAL---------------LPAKRQTL-----------------------LLSA 191
Query: 230 TLTQDPNKLAQLDLHHPLFLTT----GETRYKLPERLESYKLICESKLKPLYLVALLQSL 285
T Q+ LA LH P+ + PE + + + + L L++
Sbjct: 192 TFPQNVEALATRLLHDPVRVQVDADQAAEHSTSPENISQRAIAVDGPRRTQLLRQLVKQ- 250
Query: 286 GE-----EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
GE E+ +VF + + L L G I + G Q R L F+ +
Sbjct: 251 GENQPEWERALVFVAKRHTAEMLADKLYKAG---IYATTFHGDMSQGARKDVLDQFKAKR 307
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
Q+L+++D RG+D+ + V+NYD P YIHR GRT RAG G T + +
Sbjct: 308 WQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFVSPADTA 367
Query: 401 RFK 403
+K
Sbjct: 368 HWK 370
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/422 (28%), Positives = 199/422 (47%), Gaps = 71/422 (16%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
+G P+Q E+I P L E DL + TG+GKT ++ALP++ + R +
Sbjct: 25 VGYEKPSPIQA----ESI-PLLLEGHDLLGQAQTGTGKTAAFALPMLANIDPEQ-RKPQL 78
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA+QV + F A S+ IK + G YD +
Sbjct: 79 LVLAPTRELAIQVAEAFQVYA------------------SFSQKIKVLPVYGGQSYD--N 118
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+++L+ V ++V TPGR++DHI + L L YLV+DE D +LR + + +L
Sbjct: 119 QIRQLKRGVQVVVGTPGRIIDHIK-RKTLDLSELKYLVLDEADEMLRMGFIDDVELIL-- 175
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+ + E + + S +P G +K I +R KD + ++ V +A+ + +
Sbjct: 176 SHAPEERQTALFSATMP---GPIKKI----TQRYLKDPKHVKIASKVSTASTIR--QRYC 226
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
Q+ HH +LE+ I E V + + I+F + +
Sbjct: 227 QIAPHH---------------KLEALTRIME--------VEVFDGM-----IIFVRTKTA 258
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T L L+ G ++ +G Q+ R +T++ ++GKI +LV++D + RG+DVE V
Sbjct: 259 TVELADKLSARG---YDVEPLNGDIPQAARERTVEKLKQGKIDILVATDVVARGLDVERV 315
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
++V+NYD P ++Y+HR GRT RAG+ G + E KR ++K I
Sbjct: 316 SHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHRE-KRLLFSIEKTTKQPIEAMPI 374
Query: 420 PS 421
PS
Sbjct: 375 PS 376
>gi|403528704|ref|YP_006663591.1| RH3: DEAD-box ATP-dependent RNA helicase 3 [Arthrobacter sp.
Rue61a]
gi|403231131|gb|AFR30553.1| RH3: DEAD-box ATP-dependent RNA helicase 3 [Arthrobacter sp.
Rue61a]
Length = 586
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 183/417 (43%), Gaps = 75/417 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 58
GI FP+QV +T L RD+ TGSGKT+++A+P+V L+ R + R
Sbjct: 34 GIEEAFPIQVKTLPDT----LAGRDVLGRGRTGSGKTIAFAIPLVARLAEREAKHFRKPG 89
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LV+ PTR+LA Q+ +A A+GL+ + G IS+ + L AG
Sbjct: 90 RPMGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGG------ISQARQEKALRAG--- 140
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
VDI++A PGRL D I R TLE + V+DE D + A +LP
Sbjct: 141 ------------VDIVIACPGRLEDLIR-QRILTLEAVEVTVLDEADHM---ADLGFLPV 184
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
V +L D + +++ SATL
Sbjct: 185 VKKLM-----------------------------------DMTPTQGQRLLFSATLDNGV 209
Query: 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 295
+KL L +PL + + + + +E + L+ + L+ L S G + ++F
Sbjct: 210 DKLVNRYLSNPLTHSVDDPQAAVTT-MEHHVLVVNDQTVKKQLIVELAS-GAGRRVLFMR 267
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ +L L G I + G Q+ R + L F G ++VLV++D RG+
Sbjct: 268 TKHHARKLAKTLTDAG---IPAVDLHGNLSQNARDRNLAEFSNGDVRVLVATDVAARGVH 324
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
V+ V V++ D P K Y+HR+GRTARAG G TL ++ KKL++ A D
Sbjct: 325 VDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVKKLMKAAGVD 381
>gi|422909174|ref|ZP_16943826.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-09]
gi|424658529|ref|ZP_18095786.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-16]
gi|341635764|gb|EGS60470.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-09]
gi|408055013|gb|EKG89967.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-16]
Length = 423
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/404 (30%), Positives = 189/404 (46%), Gaps = 82/404 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCL 57
MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L + R
Sbjct: 21 MGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPA 76
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-D 116
R L++ PTR+LA+QV + A+A L++ G G+ Y +
Sbjct: 77 RILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------------GVQYQE 117
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L + PTV
Sbjct: 118 HADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRMLDMGFG---PTV 170
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
+L+ E R+ T L SA T+ GVE GF +A L +DP
Sbjct: 171 DRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF-------------TADLLKDP- 206
Query: 237 KLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 291
A +D P +++ +P ++E K I + E+ I
Sbjct: 207 --AHIDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ--------------AERSI 250
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
VF + E RL L + + +I G Q R+ + FREG + +L+++D
Sbjct: 251 VFLKTRE---RLADLRSELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAA 307
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 308 RGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase [Methylobacterium populi BJ001]
gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
BJ001]
Length = 501
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 171/379 (45%), Gaps = 73/379 (19%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTL-SNRA-VRCLRALVVLPTRDLALQVKDVFAAI 79
L RD+ + TG+GKT ++ LP++ L + RA R R L++ PTR+LA QV++ F
Sbjct: 36 LARRDVLGIAQTGTGKTAAFTLPMLTMLETGRARARMPRTLILEPTRELAAQVEENFERY 95
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
L+V L +G S AD+ ++L + D+L+ATPGRL+
Sbjct: 96 GTNHKLNVALIIGGVSFADQDAKLTR---------------------GTDVLIATPGRLL 134
Query: 140 DHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
DH RG L + LV+DE DR+L F+P
Sbjct: 135 DHFE--RGKLLLTGVELLVIDEADRMLDMG-------------------------FIPD- 166
Query: 199 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE---TR 255
+ER K P+ R + SAT+ + +LA + LH+P + T
Sbjct: 167 -----------IERIVKMVPFTRQT-LFFSATMPPEIERLADMFLHNPQRVEVARPSSTA 214
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELR 314
+ +RL + K K L L++S E + I+F + L L G
Sbjct: 215 TTIEQRLVATGAEGHEKRK--ILRHLIRSADELQNGIIFCNRKRDVALLQKSLASHG--- 269
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
+ G Q R+ L FR G++ +LV+SD RG+D+ V++V N+D P + + Y
Sbjct: 270 FNVAALHGDMDQRARTAALDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 375 IHRAGRTARAGQLGRCFTL 393
+HR GRT RAG+ G FTL
Sbjct: 330 VHRIGRTGRAGRAGHAFTL 348
>gi|444377668|ref|ZP_21176877.1| ATP-dependent RNA helicase SrmB [Enterovibrio sp. AK16]
gi|443678252|gb|ELT84924.1| ATP-dependent RNA helicase SrmB [Enterovibrio sp. AK16]
Length = 413
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 182/392 (46%), Gaps = 66/392 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVL 63
F A+ I G+ RD+ ++PTG+GKT ++ LP++Q L + + RAL++
Sbjct: 22 FERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPLLQHLIDFPRQKPGPARALILT 81
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA+QV D A+A L + G GI Y ++ +
Sbjct: 82 PTRELAIQVADQARALAKYTDLKIITITG-------------------GISY--QEHAEI 120
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
L DI+VATPGRLM++I A R F + LV+DE DR+L + P V +L+
Sbjct: 121 LGKTQDIVVATPGRLMEYIEAER-FDCRAIESLVLDEADRMLDMGFG---PAVDKLS--- 173
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
E R+ S + T+ G+E GFK+ TL DP ++
Sbjct: 174 TECRWRKQSMLFSA------TLEGKGIE-GFKN-------------TLLTDPVEV----- 208
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 303
E + +++ + C+ L+ + + E+ I+F V++ RL
Sbjct: 209 -------EAEPPRRERKKITQWYYRCDDMAHKNALLKAILTEQAERAIIF---VKTRERL 258
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
L + ++ G Q+ R+ ++ F G+I VL+++D RG+DV +++V+
Sbjct: 259 AALREFLTKEKVNCAWLQGEMAQAKRTYAIERFTTGEINVLLATDVAARGIDVPDIDHVI 318
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
N+D P Y+HR GRTARAG+ G +L+
Sbjct: 319 NFDLPRKADVYLHRIGRTARAGKKGNAISLVE 350
>gi|384484503|gb|EIE76683.1| hypothetical protein RO3G_01387 [Rhizopus delemar RA 99-880]
Length = 686
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 182/405 (44%), Gaps = 72/405 (17%)
Query: 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFA 77
L ++D+ + TGSGKTLS+ +P+++ L + + L AL++ PTR+LA+Q+ +V
Sbjct: 13 ALAKKDVLGAAKTGSGKTLSFLIPVLEILFRQQWNSADGLGALIISPTRELAVQIFEVLK 72
Query: 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 137
I S GL +G V QE S ++ILV+TPGR
Sbjct: 73 KIGKYHTFSAGLIIGGKEFK----------------------VEQERISRMNILVSTPGR 110
Query: 138 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 197
L+ H++ + GF + L LV+DE DR++ +Q + ++ EN LP+
Sbjct: 111 LLQHMDQSVGFVCDQLQCLVLDEADRIMDMGFQNTMNAII-------EN--------LPN 155
Query: 198 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRY 256
+L + SAT T+ LA+L L P ++ E +
Sbjct: 156 HRQTL-----------------------MFSATQTRSVKDLARLSLKDPEYVAVHERAEH 192
Query: 257 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR-- 314
P+ L + + E K L + +++ + K IVF SS + T + F +L+
Sbjct: 193 STPKTLSQHFVTAELHQKLDILYSFIKTHLKTKMIVFMSSCKQTR---FVYESFCKLQPG 249
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
I I G Q+Q+ R + + F + VL+ +D RG+D V+ VV D P TY
Sbjct: 250 IPIMHLHGKQKQTKRVEIFRKFTATQHAVLLCTDIAARGLDFPAVDWVVQLDCPEDADTY 309
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
IHR GRTAR G +L EV+ + L+K PI I
Sbjct: 310 IHRVGRTARFDAEGHALMILVPSEVEGMTEELKKK---RVPIEEI 351
>gi|424844887|ref|ZP_18269498.1| DNA/RNA helicase, superfamily II [Jonquetella anthropi DSM 22815]
gi|363986325|gb|EHM13155.1| DNA/RNA helicase, superfamily II [Jonquetella anthropi DSM 22815]
Length = 590
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 182/410 (44%), Gaps = 73/410 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLR 58
G PVQ V +G ++RDL + + TGSGKTL++ LP++ L++R + ++
Sbjct: 24 GFDEPTPVQRGV----LGQDDWDRDLVVQARTGSGKTLAFLLPVLSELASRLFPGRQTVK 79
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
AL++ PTR+LA Q+ A+ VG+ + VG + +IS
Sbjct: 80 ALILSPTRELAQQIAQEAASFGRLVGIGTAVLVGGMDMDRQIS----------------- 122
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
L+S V + V TPGR++DH+ RG L + +V+DE D +L ++ + +L
Sbjct: 123 ----SLRSGVALAVGTPGRVLDHVK--RGTLDLSEIETVVLDEGDTMLDMGFRDEMEAIL 176
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
Q + T+L SA + C R F P L+ D
Sbjct: 177 QAASARKR-------TWLFSATIPQEVTAVC---RRFTTNP----------VFLSFDDES 216
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
D+ H +L RY+ LV +L C++F +
Sbjct: 217 SQHSDIVHKAYLVPSSQRYE-------------------GLVNVLLWERPSLCLIFCRTR 257
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
T + L G L + + G Q R+ L +FR G+I VLV+++ RG+DV
Sbjct: 258 SDTADVTERLQKEGFLAMPLH---GDMSQRERNTALSSFRSGRIPVLVATNVAARGLDVS 314
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
GV++V+ P ++T++HR+GRT RAG G +L E RFK +++
Sbjct: 315 GVSHVIQLGVPESLETFVHRSGRTGRAGHEGTNLLVLTPAESSRFKFMMR 364
>gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
gi|406678532|ref|ZP_11085707.1| hypothetical protein HMPREF1170_03915 [Aeromonas veronii AMC35]
gi|423205247|ref|ZP_17191803.1| hypothetical protein HMPREF1168_01438 [Aeromonas veronii AMC34]
gi|423211047|ref|ZP_17197600.1| hypothetical protein HMPREF1169_03118 [Aeromonas veronii AER397]
gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
gi|404614049|gb|EKB11053.1| hypothetical protein HMPREF1169_03118 [Aeromonas veronii AER397]
gi|404621645|gb|EKB18511.1| hypothetical protein HMPREF1170_03915 [Aeromonas veronii AMC35]
gi|404624330|gb|EKB21165.1| hypothetical protein HMPREF1168_01438 [Aeromonas veronii AMC34]
Length = 407
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/432 (27%), Positives = 184/432 (42%), Gaps = 73/432 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVL 63
F + Q + P L RD+ ++PTG+GKT S+ LP +Q L + R R L++
Sbjct: 23 FTRPTTIQQMVLEPALDGRDILASAPTGTGKTASFLLPALQHLLDFPRRKPGPCRMLILT 82
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LALQV A+A LS+ +G G+ + E+ L
Sbjct: 83 PTRELALQVTAHAKALAAHTNLSIETIIG-------------------GVSH--EEQLPA 121
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
L DI+VATPGRL+++I F + LV+DE DR+L
Sbjct: 122 LTKTTDIVVATPGRLLEYIEKEE-FESHDIEVLVLDEADRML------------------ 162
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT-QDPNKLAQLD 242
G +K + R E ++ M+ SATL K A
Sbjct: 163 --------------DMGFIKDVNRIVAEARYRKH------TMLFSATLEGAGLEKFANEI 202
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L P+ L R + + L ++ K L +L+ +K I+F V++ R
Sbjct: 203 LKDPVELHAEPPRSERRPITQWIHLADDAAHKLALLTHILKDPETQKAIIF---VKTRER 259
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L I G QS R ++++ F EG++ L+++D RG+D+ V++V
Sbjct: 260 LAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHEGEVPFLIATDVAARGIDLPNVSHV 319
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS 422
+NYD P Y+HR GRT RAG G +L+ ++ K+ + + +
Sbjct: 320 INYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAKIERYTEE------RLKRR 373
Query: 423 LIESLRPVYKSG 434
+I+ LRP +K
Sbjct: 374 VIDELRPKHKEA 385
>gi|408372947|ref|ZP_11170646.1| ATP-dependent RNA helicase RhlB [Alcanivorax hongdengensis A-11-3]
gi|407767299|gb|EKF75737.1| ATP-dependent RNA helicase RhlB [Alcanivorax hongdengensis A-11-3]
Length = 406
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/404 (30%), Positives = 187/404 (46%), Gaps = 73/404 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 58
G P+Q V + T+ D + TG+GKT ++ + ++ L V R
Sbjct: 42 GFQYCTPIQAEVLEHTLSGA----DAIGRAQTGTGKTAAFLITVINDLLKNPVTVKRFAG 97
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
AL+V PTR+LA+Q++ +A L V VG G+ +
Sbjct: 98 EPRALIVAPTRELAMQIEKDAKQLAKYTDLQVMSVVG-------------------GMNF 138
Query: 116 DPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+ + + LQS+ +DILVATPGRL+D R L+ + +LV+DE DR+L + +P
Sbjct: 139 NRQQ--ERLQSSLIDILVATPGRLLD-FGKRRDLWLDRVEFLVLDEADRMLDMGF---IP 192
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
V ++ ++R+ T L SA F D M L+ T+D
Sbjct: 193 DVKRIVGMTPKSRYR--QTLLFSA--------------TFNDDV------MNLARRWTED 230
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
A++ P +TT K+ Y + K K LY L+ L EK IVF
Sbjct: 231 ----AEVVEIEPAQVTTETVEQKV------YITNTDDKFKLLY--NLITGLKMEKVIVFA 278
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ + T RL L G +K+ SG Q+ R KTL+ FR G +QVL+++D RG+
Sbjct: 279 NRRDITRRLNDRLQKKG---LKVSLISGDVPQNQRMKTLENFRNGNLQVLIATDVAGRGI 335
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
++GV++VVNY+ P + Y+HR GRT RAG G + +D+
Sbjct: 336 HIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDD 379
>gi|335428790|ref|ZP_08555700.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|335430826|ref|ZP_08557712.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334887366|gb|EGM25698.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334891731|gb|EGM29977.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
Length = 528
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/444 (26%), Positives = 196/444 (44%), Gaps = 92/444 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG P+Q E I L D+ + TG+GKT ++++P+++ L + R ++ +
Sbjct: 21 MGFVEPTPIQA----EAIPYILEGNDIIGQAQTGTGKTAAFSIPLIEKL-DLNNRSIQGI 75
Query: 61 VVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
++ PTR+LA+QV D + V G+ V G S ++ L ++P+
Sbjct: 76 ILCPTRELAIQVTDEIRKLTKYVEGVKVVPIYGGQSYNIQLKALKRKPQ----------- 124
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
I+V TPGR++DHIN + LE++ L++DE D +L+ ++ L +LQ
Sbjct: 125 ----------IVVGTPGRVIDHINR-KTVKLENIKMLILDEADEMLKMGFREDLEYILQK 173
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
T ++ + A+ +P A + K + P+L++ + +LT D
Sbjct: 174 TPTERQTTLFSAT--MPKAIQDIAN----------KYQKKPKLIQ-IERKSLTVD----- 215
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
++ F ++ L LV LL + IVF
Sbjct: 216 --NIKQEYFELNNNQKFDL-------------------LVRLLDHNHYQSAIVF------ 248
Query: 300 THRLCTLLNHFGELRIKIKEYS-------GLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
C EL ++++E++ G +Q R + + +FR I++LV++D R
Sbjct: 249 ----CNTKREVDELVVRLQEHNYMTEALHGDLKQQQRDRVMNSFRNKNIKILVATDVAAR 304
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK----LLQK 408
G+DV V V NYD P + Y+HR GRT RAGQ G +T ++ + R K + K
Sbjct: 305 GIDVNNVEAVFNYDIPLDDEAYVHRIGRTGRAGQSGASYTFINPKQFHRLKSIERYIKHK 364
Query: 409 ADNDSCP-IHSIPSSLIESLRPVY 431
D S P + I S LR +Y
Sbjct: 365 IDKGSIPTVKDIQDS---KLRDLY 385
>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AN-5034]
gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus Peru-466]
gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus K5030]
gi|433660511|ref|YP_007301370.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus Peru-466]
gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AN-5034]
gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus K5030]
gi|432511898|gb|AGB12715.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
Length = 444
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 179/403 (44%), Gaps = 66/403 (16%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + ++ I + +DL +S TGSGKTL++ LP++ ++L ++ RA+++
Sbjct: 21 FKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILA 80
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV ++ + L +G + D++ L + PK
Sbjct: 81 PTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKALRRYPKF-------------- 126
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+VATPGRL DH+ R L+ L L++DE DR+L
Sbjct: 127 -------IVATPGRLADHLE-HRSLYLDGLETLILDEADRMLDLG--------------- 163
Query: 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLD 242
F P L+ I R R ++ SATL + N +A
Sbjct: 164 ----------FAPE----LRRIHNAAKHR--------RRQTLMFSATLDHAEVNDIASEM 201
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
L+ P + G + + + + + L K L +L + I+FT++ + T R
Sbjct: 202 LNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLSEAEYRQVIIFTATRDDTER 261
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L LN E ++K SG Q+ R+ + F ++LV++D +RG+D+ V +V
Sbjct: 262 LTAKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHV 318
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
+N+D P + + Y+HR GRT RAG G +L+ + FK++
Sbjct: 319 INFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRI 361
>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
Length = 421
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 189/404 (46%), Gaps = 82/404 (20%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCL 57
MG S P QV E I L RD+ ++PTG+GKT ++A+P +Q L + R
Sbjct: 21 MGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFPRRKAGPA 76
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-D 116
R L++ PTR+LA+QV + A+A L++ G G+ Y +
Sbjct: 77 RILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------------GVQYQE 117
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L + PTV
Sbjct: 118 HADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRMLDMGFG---PTV 170
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
+L+ E R+ T L SA T+ GVE GF +A L +DP
Sbjct: 171 DRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF-------------TADLLKDP- 206
Query: 237 KLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 291
A +D P +++ +P ++E K I + E+ I
Sbjct: 207 --AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ--------------AERSI 250
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
VF + E RL L + +I G Q R+ + FREG + +L+++D
Sbjct: 251 VFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGDVNILLATDVAA 307
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 308 RGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|182439289|ref|YP_001827008.1| DEAD/DEAH box helicase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178467805|dbj|BAG22325.1| putative DEAD-box RNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 537
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/413 (27%), Positives = 179/413 (43%), Gaps = 77/413 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRA 59
G++ FP+Q A + L RD+ TGSGKTL++ L ++ + R R A
Sbjct: 95 GVTEPFPIQGATLPNS----LAGRDILGRGRTGSGKTLAFGLALLARTAGRRGEPRAPLA 150
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
+V++PTR+LA QV D A AV L + VG SI + + L
Sbjct: 151 MVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATL---------------- 194
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ ++LVATPGRL D I RG L+ + V+DE D++ + + +L+
Sbjct: 195 -----RRGAEVLVATPGRLKDLIE--RGDCRLDEVSITVLDEADQMADMGFMPQVVALLK 247
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ--DPN 236
+D + A+ DK RLVKM L+ + DP+
Sbjct: 248 QVEADGQRMLFSATL----------------------DKNIDRLVKMFLTDPVVHSVDPS 285
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
A + H + ET K VA + E + I+F +
Sbjct: 286 AGAVTTMEHHVLHVLDETDKKA--------------------VATKIAAREGRVIMFVDT 325
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ R L G ++ G + Q R++TL F+ G++ LV+++ RG+ V
Sbjct: 326 KRAADRFAKRLLASG---VRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVAARGIHV 382
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+ ++ VVN D P K Y+HR GRTARAG+ G TL+ +E + +L+Q A
Sbjct: 383 DDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMQDA 435
>gi|449479900|ref|XP_002199492.2| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Taeniopygia
guttata]
Length = 615
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 173/412 (41%), Gaps = 60/412 (14%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V A+ + I L R+L ++PTGSGKTL++ +P++ L + RAL++ PTR
Sbjct: 191 FHVPTAIQMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPRNKGFRALIISPTR 250
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q +A G + +I + EA + P+
Sbjct: 251 ELASQTHRELVKLAEGTGFRI--------------HMIHKAA-EAAKKFGPKS-----SK 290
Query: 127 AVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DILV TP RL+ + L + +LVVDE+D+L
Sbjct: 291 KFDILVTTPNRLIYLLKEDPPAIDLSSVEWLVVDESDKL--------------------- 329
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
F D + G++ + R + + SAT D + +L+L +
Sbjct: 330 --FEDGKSGFREQLGTIFLACTSHLAR-----------RALFSATFAHDVEEWCKLNLDN 376
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG-EEKCIVFTSSVESTHRLC 304
+ ++ G R E +E L S+ L + L G +VF S+E L
Sbjct: 377 VVLVSVG-ARNSAAETVEQELLFVGSETGKLTAMRELVKKGFAPPVLVFVQSIERAKELF 435
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L + G I + + Q R + +++FR GKI VL+ S + RGMD +GVN V+N
Sbjct: 436 HELIYEG---INVDVIHADKTQQQRDRVVQSFRAGKIWVLICSALLARGMDFKGVNMVIN 492
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
YD P YIHR GRT RAG G+ T +D+ + + CP+
Sbjct: 493 YDLPTSAVEYIHRIGRTGRAGHRGKAVTFFTEDDKPLLRSIANVIQRAGCPV 544
>gi|326779941|ref|ZP_08239206.1| DEAD/DEAH box helicase domain protein [Streptomyces griseus
XylebKG-1]
gi|326660274|gb|EGE45120.1| DEAD/DEAH box helicase domain protein [Streptomyces griseus
XylebKG-1]
Length = 537
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/413 (27%), Positives = 179/413 (43%), Gaps = 77/413 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRA 59
G++ FP+Q A + L RD+ TGSGKTL++ L ++ + R R A
Sbjct: 95 GVTEPFPIQGATLPNS----LAGRDILGRGRTGSGKTLAFGLALLARTAGRRGEPRAPLA 150
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
+V++PTR+LA QV D A AV L + VG SI + + L
Sbjct: 151 MVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATL---------------- 194
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ ++LVATPGRL D I RG L+ + V+DE D++ + + +L+
Sbjct: 195 -----RRGAEVLVATPGRLKDLIE--RGDCRLDEVSITVLDEADQMADMGFMPQVVALLK 247
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ--DPN 236
+D + A+ DK RLVKM L+ + DP+
Sbjct: 248 QVEADGQRMLFSATL----------------------DKNIDRLVKMFLTDPVVHSVDPS 285
Query: 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 296
A + H + ET K VA + E + I+F +
Sbjct: 286 AGAVTTMEHHVLHVLDETDKKA--------------------VATKIAAREGRVIMFVDT 325
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ R L G ++ G + Q R++TL F+ G++ LV+++ RG+ V
Sbjct: 326 KRAADRFAKRLLASG---VRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVAARGIHV 382
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+ ++ VVN D P K Y+HR GRTARAG+ G TL+ +E + +L+Q A
Sbjct: 383 DDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMQDA 435
>gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
Length = 481
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 185/417 (44%), Gaps = 96/417 (23%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+SSL + + E I L ++DL S TGSGKT +Y +PI + L + +AL
Sbjct: 18 ALSSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPICE-LVDWNENKPQAL 76
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY--DPE 118
++ PTR+LALQV ++I+ + + +++A Y P
Sbjct: 77 ILTPTRELALQV------------------------TEDITNIGRFKRIKATPLYGKHPF 112
Query: 119 DVLQ-ELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTV 176
+ + EL+ + V TPGR++DHI RG +L+ + YLV+DE D +L + + ++
Sbjct: 113 HIQKAELKQRTHVAVGTPGRVLDHIE--RGTLSLDRIAYLVIDEADEMLNMGFIEQVQSI 170
Query: 177 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236
+Q SD V M+ SAT +D
Sbjct: 171 IQALPSDR--------------------------------------VTMLFSATFPEDVA 192
Query: 237 KLAQLDLHHPL-------FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL---- 285
L++ ++ P+ +TT + L + ES KL ALLQ L
Sbjct: 193 TLSRKYMNDPVKIEIKATGITTATIDHSLIQVKESDKL------------ALLQDLLIVE 240
Query: 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 345
+ CI+F + E+ TL +L G Q R + + AFR G+ + L+
Sbjct: 241 NPDSCIIFCRTQENVD---TLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLI 297
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
++D RG+D+ + +V+NYD P ++Y+HR GRT RAG+ G+ +L+ + +R
Sbjct: 298 ATDVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRL 354
>gi|367001570|ref|XP_003685520.1| hypothetical protein TPHA_0D04520 [Tetrapisispora phaffii CBS 4417]
gi|357523818|emb|CCE63086.1| hypothetical protein TPHA_0D04520 [Tetrapisispora phaffii CBS 4417]
Length = 502
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 195/429 (45%), Gaps = 72/429 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E+I + RD+ + G+GKT ++ +P ++ + ++ + ++A
Sbjct: 45 MGIFEAGFEKPSPIQEESIPVAIAGRDILARAKNGTGKTAAFVIPTLEKVKSK-INKIQA 103
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + +S + G +++ D+I L
Sbjct: 104 LIMVPTRELALQTSQVVRTLGKRCEISCMVTTGGTNLRDDIIRL---------------- 147
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL-VVDETDRLLREAYQAWLPTVLQ 178
V ILV TPGR++D A+RG C L ++DE D++L +++ + +L
Sbjct: 148 -----NETVHILVGTPGRVLDL--ASRGIADLSGCGLFIMDEADKMLSRDFKSIIEQIL- 199
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
TFLP SL +P VK + L +K
Sbjct: 200 --------------TFLPEQHQSL-----------LFSATFPLTVKEFMVKHL----HKP 230
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 298
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 231 YEINLMDELTLKGITQYYAFVE--EKQKLHC--------LNTLFSKLQINQAIIFCNS-- 278
Query: 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 358
T+R+ L +L +Q R++ FR GK++ LV SD +TRG+D++
Sbjct: 279 -TNRVELLAKKITDLGFSCYYSHARMKQQERNRVFHEFRHGKVRTLVCSDLLTRGIDIQA 337
Query: 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418
VN V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +
Sbjct: 338 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAA 394
Query: 419 IPSSLIESL 427
IP+++ +SL
Sbjct: 395 IPTTIDKSL 403
>gi|418049809|ref|ZP_12687896.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353190714|gb|EHB56224.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 443
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 187/416 (44%), Gaps = 71/416 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--A 59
GI+S FP+QV+ +T L RD+ TGSGKTL++++P+V L+ R R
Sbjct: 24 GITSPFPIQVSTLPDT----LAGRDVLGRGKTGSGKTLAFSIPLVSRLTGTTRRASRPSG 79
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
LV+ PTR+LA Q+ +A A GL V G G+ + +
Sbjct: 80 LVLAPTRELATQITAALQPLAEASGLRVTTIFG-------------------GVPQNKQ- 119
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++ LQ+ VDI+VA PGRL D + R TL+ + V+DE D + A +LP V ++
Sbjct: 120 -VKALQAGVDIVVACPGRLEDLMR-QRLITLDAVEITVIDEADHM---ADLGFLPGVTRI 174
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+ G + + ++ G DK R ++ +S + D + +
Sbjct: 175 --------------LAATPAGGQRLLFSATLDNGV-DKLVTRFLRNQVSHAVDSDQSPVD 219
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+ HH + + + + L L S G + I+F +
Sbjct: 220 AM-THHVFHVASADAKKDLVHTLAS---------------------GTGRRILFLRTKHH 257
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+L L G I + G Q R + L AF G +VLV++D RG+ V+ V
Sbjct: 258 ARKLAKQLTQAG---IPSVDLHGNLSQPARDRNLAAFAAGTARVLVATDIAARGVHVDDV 314
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP 415
VV+ D PA K Y+HR+GRTARAG+ G T++ ++ + + LL+KA + P
Sbjct: 315 ELVVHIDPPAEHKAYLHRSGRTARAGRAGDVVTVVLPEQRRDTQALLRKAGIKATP 370
>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
dendrobatidis JAM81]
Length = 764
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 190/406 (46%), Gaps = 72/406 (17%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAV-- 54
GI LFP+Q A + P + DL + TG+GKTL+++LP+++ L SNR +
Sbjct: 160 GIVQLFPIQAA----SFDPIIKGMDLLGRARTGTGKTLAFSLPMIEVLKRERESNRHLFS 215
Query: 55 ---RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R R L++ PTR+LA+QV F +I+ S +K
Sbjct: 216 QRGRAPRVLIMAPTRELAMQVHREFDSIS--------------------SGELKSTCAYG 255
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQ 170
G YD + ++ +D++V TPGRL+DHI RG L L ++ +DE D++L +
Sbjct: 256 GSPYDSQ--CNAMRDGIDVIVGTPGRLIDHIE--RGTLKLNQLRFICLDEADQMLDIGFA 311
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
+ +LQ + + +++ +DA F + P +K +S
Sbjct: 312 ESMEKILQQVQ-EQKSKLTDAPDHQVLLFSAT----------------MPVWIKQAVSKY 354
Query: 231 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL---VALLQSLGE 287
+ PNK+ LDL G + K ++ Y + + + L VA+ G
Sbjct: 355 MK--PNKVT-LDL-------IGTDKQKTSATVKHYAIASHWQNRSALLGDIVAIYGRGGA 404
Query: 288 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 347
+ I+F VE+ L + + + + G +Q R T++ FREGK L+++
Sbjct: 405 GRTIIF---VETKGEANELAMNDKLVTMGTQVLHGDIQQKQREVTMQGFREGKFTSLITT 461
Query: 348 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
+ RG+D+ V+ V+N + P+ +++YIHR+GRT RAG+ G C T
Sbjct: 462 NVCARGVDIPEVDLVINCEPPSDVESYIHRSGRTGRAGKSGICVTF 507
>gi|424881770|ref|ZP_18305402.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518133|gb|EIW42865.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 520
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 175/396 (44%), Gaps = 93/396 (23%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLALQVKDVFAAI 79
L RD+C + TG+GKT S+ LP++ L RA R R L++ PTR+LA QV + F
Sbjct: 43 LERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKY 102
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
L+V L +G G+ ++ +D ++L+ D+L+ TPGRL+
Sbjct: 103 GKNHRLNVALLIG-------------------GVSFEDQD--RKLERGADVLICTPGRLL 141
Query: 140 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 199
DH + + + LV+DE DR+L F+P
Sbjct: 142 DHFERGK-LLMSGVEILVIDEADRMLDMG-------------------------FIPD-- 173
Query: 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 259
+ER K P+ R + SAT+ + KLA L +P
Sbjct: 174 ----------IERIAKMIPFTRQT-LFFSATMPSEIQKLADRFLQNP------------- 209
Query: 260 ERLESYKLICESKLKPLYLVA--------------LLQSLGEEK-CIVFTSSVESTHRLC 304
ER+E K + VA L+++ E K IVF + + L
Sbjct: 210 ERIEVAKPASAAATVTQRFVASHGKDYEKRAVLRELVRAQTELKNAIVFCNRKKDVADLF 269
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L G + G Q R+ TL++FR+G +Q+LV+SD RG+D+ V++V N
Sbjct: 270 RSLERHG---FSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDVAARGLDIPDVSHVFN 326
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+D P + + Y+HR GRT RAG+ G FTL+ K + K
Sbjct: 327 FDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTK 362
>gi|367007158|ref|XP_003688309.1| hypothetical protein TPHA_0N00940 [Tetrapisispora phaffii CBS 4417]
gi|357526617|emb|CCE65875.1| hypothetical protein TPHA_0N00940 [Tetrapisispora phaffii CBS 4417]
Length = 771
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 110/405 (27%), Positives = 174/405 (42%), Gaps = 71/405 (17%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLA 69
+ +++I L D+ + TGSGKTL++ +P+++ L L AL++ PTR+LA
Sbjct: 67 IQRDSIPISLKGHDILGAAKTGSGKTLAFLIPVLEKLYREKWSEFDGLGALIISPTRELA 126
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 129
+Q +V I S GL +G + E + + S ++
Sbjct: 127 MQTYEVLTKIGTHTSFSAGLVIGGKDVKFESARI----------------------SKIN 164
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
IL+ TPGR++ H++ G + +L LV+DE DR L +Q L ++
Sbjct: 165 ILIGTPGRILQHMDQAVGLSTSNLQMLVLDEADRCLDMGFQKTLDAIV------------ 212
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
+ LP P ++ SAT +Q LA+L L +
Sbjct: 213 ---SNLP-----------------------PTRQTLLFSATQSQSLTDLARLSLTDYKTV 246
Query: 250 TTGE-------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
T E T PE L+ + E K L + ++S + K IVF SS + H
Sbjct: 247 GTQEVINEKNGTAASTPETLQQSYITVELPDKLDILFSFIKSHLKSKMIVFLSSSKQVHF 306
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
+ + I + G Q+Q R++TL F + L ++D + RG+D V+ V
Sbjct: 307 VYETFRKM-QPGISLMHLHGRQKQRARTETLDKFSRAQQVCLFATDVVARGIDFPSVDWV 365
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
V D P + TYIHR GR+AR G+ G+ +L E F K LQ
Sbjct: 366 VQLDCPEDVDTYIHRVGRSARYGKQGKSLIMLTPQEQDAFLKRLQ 410
>gi|67623801|ref|XP_668183.1| ENSANGP00000021948 [Cryptosporidium hominis TU502]
gi|54659367|gb|EAL37947.1| ENSANGP00000021948 [Cryptosporidium hominis]
Length = 661
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/444 (26%), Positives = 208/444 (46%), Gaps = 93/444 (20%)
Query: 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRALVV 62
L P +V V E I + +DL INS TGSGKTL+YA+PI L SNR+ + +LV+
Sbjct: 35 LVPTKVQV--EVIKKIIEGKDLLINSYTGSGKTLAYAIPICHNLLNISNRSANKVYSLVL 92
Query: 63 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 122
+P+R+L +Q +VF + V ++VG AD+ + L K L+ G
Sbjct: 93 VPSRELVIQTHEVFEQL--LVFCENNVSVGTIFNADD-NLLHKGKDLKYG---------- 139
Query: 123 ELQSAVDILVATPGRLM-DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
+IL++TPG ++ ++ +++ +LV+DE D L Y + VL L
Sbjct: 140 --SFRYNILISTPGDILCAKGMGSKEMIFQNIAHLVIDEADLLFAFGYDKDMSKVLDL-- 195
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
LP++ +D+ Y + +LSATL ++ + L ++
Sbjct: 196 -------------LPNS----------------QDRKYQCI---LLSATLNKEVDSLKKM 223
Query: 242 DLHHPLFLTT-------------GETRYKLPERLESYKLICESKL-KPLYLVALLQ-SLG 286
LH P+F+ +++Y+ L Y IC++ + K L L LL+ ++
Sbjct: 224 VLHRPIFVDIKPEIKEDDFNQEGNDSKYQTSGLLSEYYTICDNMVDKWLMLYILLKMNVI 283
Query: 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 346
KC++F S V++ + + L FG + + + + R ++ F +G +LV+
Sbjct: 284 PRKCLIFVSEVDTAYSIKLFLERFG---MSCGVLTPIIPAATRRMLIQCFNQGSYDILVT 340
Query: 347 SDAMT-----------------RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
SD + RG+D + V +V N+D P+ +++YIH GRTAR G G
Sbjct: 341 SDTINEKDESVLSILKDNSITYRGVDYKEVASVFNFDCPSSVRSYIHHIGRTARGGSSGV 400
Query: 390 CFTLLHK---DEVKRFKKLLQKAD 410
T+++ +E++ +LL ++
Sbjct: 401 SITIVNSNIPNEMEVLDELLNDSN 424
>gi|418063733|ref|ZP_12701365.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373557184|gb|EHP83654.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 453
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 174/386 (45%), Gaps = 73/386 (18%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTL-SNRA-VRCLRALVVLPTRDLALQVKDVFAAI 79
L RD+ + TG+GKT ++ LP++ L + RA R R L++ PTR+LA QV++ F
Sbjct: 36 LARRDVLGIAQTGTGKTAAFTLPMLTMLETGRARARMPRTLILEPTRELAAQVEENFERY 95
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
L+V L +G S AD+ ++L + D+L+ATPGRL+
Sbjct: 96 GTNHKLNVALIIGGVSFADQDAKLTR---------------------GTDVLIATPGRLL 134
Query: 140 DHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
DH RG L + LV+DE DR+L F+P
Sbjct: 135 DHFE--RGKLLLTGVELLVIDEADRMLDMG-------------------------FIPD- 166
Query: 199 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE---TR 255
+ER K P+ R + SAT+ + +LA + LH+P + T
Sbjct: 167 -----------IERIVKMVPFTRQT-LFFSATMPPEIERLADMFLHNPQRVEVARPASTA 214
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELR 314
+ +RL + K K L L++S E + I+F + +L L G
Sbjct: 215 TTIEQRLVATGAEGHEKRK--VLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHG--- 269
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
G Q R L FR G++ +LV+SD RG+D+ V++V N+D P + + Y
Sbjct: 270 FNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVK 400
+HR GRT RAG+ G+ FTL + + +
Sbjct: 330 VHRIGRTGRAGRSGQAFTLASRSDER 355
>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase [Methylobacterium nodulans ORS 2060]
gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
ORS 2060]
Length = 465
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 184/406 (45%), Gaps = 77/406 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q + I L RD+ + TG+GKT ++ LP++ L RA R R
Sbjct: 20 GYTTPTPIQA----QAIPHVLARRDVLGVAQTGTGKTAAFTLPMLTRLEQGRARARMPRT 75
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV++ F L+V L +G S AD+ +++ +
Sbjct: 76 LILEPTRELAAQVEENFERYGTNHKLNVALLIGGVSFADQDAKITR-------------- 121
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
VD+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 122 -------GVDVLIATPGRLLDHFE--RGKLLLTGVELLVIDEADRMLDMG---------- 162
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + +L
Sbjct: 163 ---------------FIPD------------IERIVKLVPFTRQT-LFFSATMPPEIQRL 194
Query: 239 AQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK-CIVFT 294
A LH+P+ + T + +RL + E K L L++ E K I+F
Sbjct: 195 ADDFLHNPVRIEVARPASTASTIEQRLVATG--GEGHQKRKTLRRLIRGAEELKNGIIFC 252
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ +L L + G + G Q R L AFR G+I +LV+SD RG+
Sbjct: 253 NRKRDVAQLQKSLANHG---FTVAALHGDMDQRARMAALDAFRSGEIPLLVASDVAARGL 309
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
D+ V++V N+D P + + Y+HR GRT RAG+ G FTL+ + + K
Sbjct: 310 DIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRNGSAFTLVARGDEK 355
>gi|389795816|ref|ZP_10198925.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
gi|388430147|gb|EIL87341.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
Length = 622
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 190/399 (47%), Gaps = 70/399 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G S P+Q A TI P L RD+ + TG+GKT ++ALPI+ ++ RA + +AL
Sbjct: 31 VGYESPSPIQAA----TIPPLLEGRDVLGQAQTGTGKTAAFALPILSRINPRAGKP-QAL 85
Query: 61 VVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
V+ PTR+LA+QV + F A + G V G G Y P+
Sbjct: 86 VLAPTRELAIQVAEAFQRYAAHIPGFQVLPIYG-------------------GQSYGPQ- 125
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L L+ V ++V TPGR++DH++ L L +LV+DE D +LR + + VL
Sbjct: 126 -LHALKRGVHVVVGTPGRVIDHLDKGT-LDLSELRFLVLDEADEMLRMGFIDDVEKVLHA 183
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
T E + + S +P+ IR+ +R KD V++++ ++ T N
Sbjct: 184 T--PPERQVALFSATMPA------VIRKI-AQRHLKDP-----VEVIIKSSTTTAAN--- 226
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+H + +G +KL L +L++ + I+F + ++
Sbjct: 227 ---IHQRYWFVSG-----------MHKLDA--------LTRILEAEPFDAMIIFARTKQA 264
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T L L G + +G Q+ R + ++ ++GK+ +LV++D RG+DV+ +
Sbjct: 265 TEELAGKLQARG---LAAAAINGDIAQAQRERVIQQLKDGKLDILVATDVAARGLDVDRI 321
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
++V+N+D P ++Y+HR GRT RAG+ G + E
Sbjct: 322 SHVLNFDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRE 360
>gi|72389070|ref|XP_844830.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62176321|gb|AAX70433.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
gi|70801364|gb|AAZ11271.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 753
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 192/428 (44%), Gaps = 64/428 (14%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL----------PIVQTLS 50
+G S PVQ + I L D+C + TGSGKT ++ L P+ QT
Sbjct: 130 IGYISPTPVQA----QAIPAILSGTDVCARAVTGSGKTAAFLLPLLHLLLTRAPMKQTRM 185
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
N R +RA+V++PTR+L +Q + V +A GL V LA+G S
Sbjct: 186 NSKRRYIRAIVLVPTRELGMQCQQVLQQFLAFTTGLQVSLAIGGVS-------------- 231
Query: 110 EAGICYDPEDVLQELQSAVDILVATPGRLMD----HINATRGFTLEHLCYLVVDETDRLL 165
P L L++ DILVATPGRL+D H A + + +V+DE D++L
Sbjct: 232 -------PSAQLAALEACPDILVATPGRLVDLIHNHKGAQSAVDITGVEVVVLDECDKML 284
Query: 166 REAYQAWLPTVLQLTRSDNENR----FSDASTFLPSAFGSLKTIRRCGVERG---FKDKP 218
+ + +L+ R E R FS T F + V+ G + K
Sbjct: 285 TVVLRDQVVDILK--RVPEETRQVLMFSATMTTEVDEFAKEHLFKPKNVDIGHVALQAKL 342
Query: 219 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK------LPERLESYKLICE-- 270
+ V++ L A + P + + D+ +TR K E +++ E
Sbjct: 343 RQQFVRVRLHADTSLQPTEENRGDVAPSAEGCQKKTRSKRSHDKPQSEGRQNHSEESESE 402
Query: 271 ----SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326
+K+K YLVAL EK ++FT + HRL L N G + E G Q Q
Sbjct: 403 AEHMTKVKSRYLVALCTGYFREKTLIFTRYRTTAHRLRLLFNVIGFPSV---ELQGNQLQ 459
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
R +L+ F G++ L S+D +RG+D++ V+ V+N+D P + YIHR GRTAR G
Sbjct: 460 EERFASLEKFASGEVNYLFSTDVASRGLDIKDVSTVINFDLPPTLTAYIHRVGRTARIGG 519
Query: 387 LGRCFTLL 394
G +L+
Sbjct: 520 SGTAVSLV 527
>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
Length = 477
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 176/403 (43%), Gaps = 97/403 (24%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLA 69
+ + I P L RD+ + TG+GKT S+ LP++ TL +R R R+LV+ PTR+LA
Sbjct: 28 IQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLHRGRARARMPRSLVLCPTRELA 86
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 129
QV + F A L+ L +G G+ + +D L + VD
Sbjct: 87 AQVAENFDIYAKHTKLTKALLIG-------------------GVSFKEQDQL--IDKGVD 125
Query: 130 ILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 126 VLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLDMG-------------------- 163
Query: 189 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 248
F+P +ER F P+ R + SAT+ + ++ F
Sbjct: 164 -----FIPD------------IERIFGLTPFTRQT-LFFSATMAPEIERITNT------F 199
Query: 249 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLC 304
L+ PER+E + S+ ++V S G EK V + +ES C
Sbjct: 200 LSN-------PERVEVARQASASETIAQHVVVFRPSRKDREGSEKRAVLRAMIESEGENC 252
Query: 305 TLLNHFGELRIKIKEYS--------------GLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
F ++ + + G QS R +TL FR+G ++ LV+SD
Sbjct: 253 RNGIIFCNRKVDVDVVAKSMKKNGYDAAPIHGDLDQSTRMRTLDGFRDGTLRFLVASDVA 312
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
RG+D+ V++V NYD P++ + Y+HR GRT RAG+ GR +
Sbjct: 313 ARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGREGRAMMI 355
>gi|403214986|emb|CCK69486.1| hypothetical protein KNAG_0C03820 [Kazachstania naganishii CBS
8797]
Length = 513
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 192/428 (44%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E I + RD+ + G+GKT ++ +P ++ + + + ++A
Sbjct: 47 MGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-LNKIQA 105
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V ++ G+S + G +++ D+I L
Sbjct: 106 LIMVPTRELALQTSQVVRSLGKHCGVSCMVTTGGTNLRDDILRL---------------- 149
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+ ILV TPGR++D + + + L V+DE D++L ++ + +L
Sbjct: 150 -----NDTIHILVGTPGRVLD-LASRKIADLSECGLFVMDEADKMLSRDFKTIIEQIL-- 201
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
FLP SL +P VK + L NK
Sbjct: 202 -------------AFLPKNHQSL-----------LFSATFPLTVKEFMEKHL----NKPY 233
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 234 EINLMEELTLKGITQYYAFVE--ERQKLHC--------LNTLFSKLQINQAIIFCNS--- 280
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L +L +Q R++ FR+GK++ LV SD +TRG+D++ V
Sbjct: 281 TNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQAV 340
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +I
Sbjct: 341 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAI 397
Query: 420 PSSLIESL 427
PS++ +SL
Sbjct: 398 PSTIDKSL 405
>gi|170579441|ref|XP_001894832.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
gi|158598430|gb|EDP36322.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
Length = 378
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 151/326 (46%), Gaps = 70/326 (21%)
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 129
+Q+ D FAA+ ++GL +G+ VG + S+L +RP
Sbjct: 1 MQIGDQFAALGVSIGLKIGIIVGGKDRVAQSSDLARRPH--------------------- 39
Query: 130 ILVATPGRLMDHINA---TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL DH+ + G E L +LV+DE DRLL Y L T+L
Sbjct: 40 IVVATPGRLADHLESDSENTGKLFEKLRFLVLDEADRLLDGQYSIELKTIL--------- 90
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
TFLP +L + SAT+T ++L Q+ + P
Sbjct: 91 ------TFLPKQRQTL-----------------------LFSATITSALSQLHQVSVKKP 121
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK----CIVFTSSVESTHR 302
F ++ ++LE ++C +K YLV ++++ E+ ++F+ +
Sbjct: 122 YFF-EDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPESLILIFSHTCRECQA 180
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L + + G K+ Q R+ +L FR G+I++L+ +D +RG+D+ V+ V
Sbjct: 181 LAIMFHGLG---FKVGSLHSQISQQERTSSLTKFRSGRIKILICTDVASRGLDIPHVDLV 237
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLG 388
VN++ P KTYIHR GR+ARAG+ G
Sbjct: 238 VNHNVPQNPKTYIHRVGRSARAGRFG 263
>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium extorquens CM4]
gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
CM4]
Length = 519
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 174/386 (45%), Gaps = 73/386 (18%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTL-SNRA-VRCLRALVVLPTRDLALQVKDVFAAI 79
L RD+ + TG+GKT ++ LP++ L + RA R R L++ PTR+LA QV++ F
Sbjct: 36 LARRDVLGIAQTGTGKTAAFTLPMLTMLETGRARARMPRTLILEPTRELAAQVEENFERY 95
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
L+V L +G S AD+ ++L + D+L+ATPGRL+
Sbjct: 96 GTNHKLNVALIIGGVSFADQDAKLTR---------------------GTDVLIATPGRLL 134
Query: 140 DHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
DH RG L + LV+DE DR+L F+P
Sbjct: 135 DHFE--RGKLLLTGVELLVIDEADRMLDMG-------------------------FIPD- 166
Query: 199 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE---TR 255
+ER K P+ R + SAT+ + +LA + LH+P + T
Sbjct: 167 -----------IERIVKMVPFTRQT-LFFSATMPPEIERLADMFLHNPQRVEVARPASTA 214
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELR 314
+ +RL + K K L L++S E + I+F + +L L G
Sbjct: 215 TTIEQRLVATGAEGHEKRK--VLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHG--- 269
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
G Q R L FR G++ +LV+SD RG+D+ V++V N+D P + + Y
Sbjct: 270 FNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVK 400
+HR GRT RAG+ G+ FTL + + +
Sbjct: 330 VHRIGRTGRAGRSGQAFTLASRSDER 355
>gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
Length = 482
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 188/408 (46%), Gaps = 80/408 (19%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+QV I P L +D+ + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYTAPTPIQVGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV++ F L+V L +G G+ ++ ++
Sbjct: 77 LILEPTRELAAQVEENFVKYGINHRLNVALLIG-------------------GVSFEEQE 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 118 --RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLDMG---------- 163
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
F+P +ER K P+ R + SAT+ + KL
Sbjct: 164 ---------------FIPD------------IERICKLIPFTRQT-LFFSATMPPEITKL 195
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQSLGE--EKCIVF 293
+ LH P+ + + + + +L+ K K L L+QS G+ + I+F
Sbjct: 196 TEQFLHSPVRIEVAKASSTA--KTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253
Query: 294 TSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352
+ + L +L H G Q R L +F++GK+++LV+SD R
Sbjct: 254 CNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAAR 309
Query: 353 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
G+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 310 GLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
Length = 517
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 174/386 (45%), Gaps = 73/386 (18%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTL-SNRA-VRCLRALVVLPTRDLALQVKDVFAAI 79
L RD+ + TG+GKT ++ LP++ L + RA R R L++ PTR+LA QV++ F
Sbjct: 36 LARRDVLGIAQTGTGKTAAFTLPMLTMLETGRARARMPRTLILEPTRELAAQVEENFERY 95
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
L+V L +G S AD+ ++L + D+L+ATPGRL+
Sbjct: 96 GTNHKLNVALIIGGVSFADQDAKLTR---------------------GTDVLIATPGRLL 134
Query: 140 DHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
DH RG L + LV+DE DR+L F+P
Sbjct: 135 DHFE--RGKLLLTGVELLVIDEADRMLDMG-------------------------FIPD- 166
Query: 199 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE---TR 255
+ER K P+ R + SAT+ + +LA + LH+P + T
Sbjct: 167 -----------IERIVKMVPFTRQT-LFFSATMPPEIERLADMFLHNPQRVEVARPASTA 214
Query: 256 YKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELR 314
+ +RL + K K L L++S E + I+F + +L L G
Sbjct: 215 TTIEQRLVATGAEGHEKRK--VLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHG--- 269
Query: 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374
G Q R L FR G++ +LV+SD RG+D+ V++V N+D P + + Y
Sbjct: 270 FNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 375 IHRAGRTARAGQLGRCFTLLHKDEVK 400
+HR GRT RAG+ G+ FTL + + +
Sbjct: 330 VHRIGRTGRAGRSGQAFTLASRSDER 355
>gi|119191710|ref|XP_001246461.1| hypothetical protein CIMG_00232 [Coccidioides immitis RS]
gi|118575177|sp|Q1EB31.1|DBP4_COCIM RecName: Full=ATP-dependent RNA helicase DBP4
gi|392864308|gb|EAS34862.2| ATP-dependent RNA helicase DBP4 [Coccidioides immitis RS]
Length = 806
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 175/399 (43%), Gaps = 68/399 (17%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAP 81
RD+ + TGSGKTL++ +P+++ L + L AL++ PTR+LA+Q+ +V I
Sbjct: 86 RDILGAAKTGSGKTLAFLVPVLENLYRKQWTEYDGLGALILSPTRELAIQIFEVLRKIGR 145
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
S GL +G S+ +E QE ++ILV TPGR++ H
Sbjct: 146 YHTFSAGLVIGGKSLQEE----------------------QERLGRMNILVCTPGRMLQH 183
Query: 142 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 201
++ T F H+ LV+DE DR++ +Q+ + +++ LP
Sbjct: 184 MDQTAAFDTAHIQMLVLDEADRIMDMGFQSTVDAIVE---------------HLPK---- 224
Query: 202 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPE 260
ER M+ SAT T+ + LA+L L P +++ E P
Sbjct: 225 ---------ER----------QTMLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPA 265
Query: 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
L+ + ++ K L + +++ + K +VF SS + + H + I +
Sbjct: 266 SLQQHYVVTPLPEKLDTLWSFIRNTLKSKILVFFSSSKQVRFVYEAFRHM-QPGIPLLHL 324
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q+QS R F K L S+D RG+D V+ V+ D P TYIHR GR
Sbjct: 325 HGRQKQSARIDITSKFSRAKYSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGR 384
Query: 381 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
TAR + GR L E + +L++ + PI I
Sbjct: 385 TARYERDGRAVLFLDPSEE---EGMLKRLEQKKIPIERI 420
>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
Length = 498
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 112/387 (28%), Positives = 178/387 (45%), Gaps = 75/387 (19%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRALVVLPTRDLAL 70
+ I P L RD+ + TG+GKT ++ LP++ L RA R R+LV+ PTR+LA
Sbjct: 28 IQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPMITLLGRGRARARMPRSLVLAPTRELAA 87
Query: 71 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 130
QV + F A L+ L +G +S D+ +LI + VD+
Sbjct: 88 QVAENFDTYAKYTKLTKALLIGGTSFKDQ-DKLIDK--------------------GVDV 126
Query: 131 LVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
L+ATPGRL+DH+ RG L + +VVDE DR+L
Sbjct: 127 LIATPGRLLDHLE--RGKLILTDVKIMVVDEADRMLDMG--------------------- 163
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
F+P +E FK P+ R + SAT+ + ++ L +P +
Sbjct: 164 ----FIPD------------IEEIFKRTPFTRQT-LFFSATMAPEIERITNTFLSNPAKV 206
Query: 250 TTGE---TRYKLPERLESYKL---ICESKLKPLYLVALLQSLGE--EKCIVFTSSVESTH 301
T + + + ++ + E+ K L AL+ + G+ I+F +
Sbjct: 207 EVARAATTNVNIKQGVVMFRASAKLREATEKRALLRALINAEGDACSNAIIFCNRKADVD 266
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
+ LN +G I G QS R++TL++FR+ K++ LV+SD RG+D+ V +
Sbjct: 267 VVAKSLNKYGYDAAPI---HGDLEQSHRTRTLESFRDNKLRFLVASDVAARGLDIPAVTH 323
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLG 388
V N+D P++ + Y+HR GRT RAG+ G
Sbjct: 324 VFNFDVPSHAEDYVHRIGRTGRAGRSG 350
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 189/432 (43%), Gaps = 78/432 (18%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVR 55
+G P+Q A I P L D+ + TG+GKT ++ALP++ + + R R
Sbjct: 34 LGYEEPTPIQRA----AIPPLLDGCDVVGQAATGTGKTAAFALPVLHRIRDGERGERGAR 89
Query: 56 CLR-----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R A+V++PTR+LA QV + +G+ V G S++ +
Sbjct: 90 AQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSRQ----------- 138
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAY 169
L+ L+ VD++VATPGR +DH+ +RG L L +V+DE D +L +
Sbjct: 139 ----------LRALEEGVDVVVATPGRALDHL--SRGSLDLSALRMVVLDEADEMLDMGF 186
Query: 170 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229
+ T+L+ T D + A+ +P L V R +D PR +++ +
Sbjct: 187 AEDIDTILERTPDDRQTMLFSAT--MPPRIAGL-------VRRYLRD---PRRIELSRAE 234
Query: 230 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 289
+L D + Q T Y +P KP L +L E
Sbjct: 235 SLDGDAASITQ-------------TAYVVPR-----------GHKPAALGRVLDIETPEA 270
Query: 290 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
+VF + E RL +N G + + G Q R++ + R G ++V++D
Sbjct: 271 TVVFCRTREEVDRLTETMNGRG---YRAEALHGGMDQHQRNRVVGRLRTGTADLVVATDV 327
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
RG+D++ + +VVNYD P+ + Y+HR GR RAG+ G TL E R K +++
Sbjct: 328 AARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAITLAEPGE-HRMIKAIERV 386
Query: 410 DNDSCPIHSIPS 421
PI +P+
Sbjct: 387 TGQPVPIRKLPT 398
>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
Length = 501
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 185/413 (44%), Gaps = 76/413 (18%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-VRCLRA 59
G ++ P+Q I P L RD+ + TG+GKT S+ LP++ L RA R R
Sbjct: 21 GYATPTPIQAGA----IPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L++ PTR+LA QV + F L++ L +G G+ +D +D
Sbjct: 77 LILEPTRELAAQVAENFDKYGKNHKLNIALLIG-------------------GVSFDEQD 117
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++L+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 118 --RKLERGADVLICTPGRLLDHFERGK-LLMTGVEILVIDEADRMLDMG----------- 163
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
F+P +ER K P+ R + SAT+ + KLA
Sbjct: 164 --------------FIPD------------IERIAKLIPFTRQT-LFFSATMPPEIQKLA 196
Query: 240 QLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK-CIVFTS 295
L +P + T + +R + + K L L+++ GE K I+F +
Sbjct: 197 DRFLQNPERVEVARPASTANTVTQRFVAAH--GKDYEKRAVLRDLIRAQGELKNAIIFCN 254
Query: 296 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355
+ L L+ G + G Q R L F++G IQ+LV+SD RG+D
Sbjct: 255 RKKDVAELFRSLDRHG---FSVGALHGDMDQRSRMAMLANFKDGNIQLLVASDVAARGLD 311
Query: 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
+ V++V N+D P + + Y+HR GRT RAG+ G FT++ K + K F ++K
Sbjct: 312 IPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTK-FSDAIEK 363
>gi|207347082|gb|EDZ73384.1| YDL160Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273565|gb|EEU08498.1| Dhh1p [Saccharomyces cerevisiae JAY291]
gi|259145084|emb|CAY78348.1| Dhh1p [Saccharomyces cerevisiae EC1118]
gi|323334302|gb|EGA75683.1| Dhh1p [Saccharomyces cerevisiae AWRI796]
Length = 506
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 193/428 (45%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E I + RD+ + G+GKT ++ +P ++ + + + ++A
Sbjct: 59 MGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-LNKIQA 117
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + G+S + G +++ D+I L
Sbjct: 118 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL---------------- 161
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
V ILV TPGR++D + + + L ++DE D++L ++ + +L
Sbjct: 162 -----NETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQIL-- 213
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+FLPS SL +P VK + L +K
Sbjct: 214 -------------SFLPSTHQSL-----------LFSATFPLTVKEFMVKHL----HKPY 245
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 246 EINLMEELTLKGITQYYAFVE--ERQKLHC--------LNTLFSKLQINQAIIFCNS--- 292
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L +L +Q R+K FR+GK++ LV SD +TRG+D++ V
Sbjct: 293 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 352
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +I
Sbjct: 353 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAI 409
Query: 420 PSSLIESL 427
P+++ +SL
Sbjct: 410 PATIDKSL 417
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,456,590,893
Number of Sequences: 23463169
Number of extensions: 259374477
Number of successful extensions: 802561
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 28847
Number of HSP's successfully gapped in prelim test: 4635
Number of HSP's that attempted gapping in prelim test: 683881
Number of HSP's gapped (non-prelim): 64562
length of query: 436
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 290
effective length of database: 8,933,572,693
effective search space: 2590736080970
effective search space used: 2590736080970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)