BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013778
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana
GN=RH1 PE=2 SV=3
Length = 522
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/431 (75%), Positives = 376/431 (87%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRAL
Sbjct: 49 MGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRAL 108
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+
Sbjct: 109 VVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDL 168
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT
Sbjct: 169 SQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLT 228
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
++ +++ F + F+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL Q
Sbjct: 229 QTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQ 288
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
LDLHHPLF+TTG +RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T
Sbjct: 289 LDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETT 348
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RLC LLN FG+ +IK KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV
Sbjct: 349 RRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVT 408
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
NV+NYD P + KT+IHRAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP
Sbjct: 409 NVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIP 468
Query: 421 SSLIESLRPVY 431
+ ++S+R Y
Sbjct: 469 PTSLDSIRATY 479
>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp.
japonica GN=Os02g0795900 PE=2 SV=1
Length = 521
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 289/435 (66%), Positives = 344/435 (79%), Gaps = 3/435 (0%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRAL
Sbjct: 55 MGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRAL 114
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K D E +
Sbjct: 115 VVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYI 174
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLT
Sbjct: 175 QMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLT 234
Query: 181 RSDNENR-FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
RS ++N +SD + + L TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+
Sbjct: 235 RSSDQNHSWSDMNG--ETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLS 292
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
QL+L HPL L +G+ RY++P +L+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES
Sbjct: 293 QLELQHPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVES 352
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+HRL TLL F +L K EYS LQR+S R KTL AF+EGKI VL+ +D M RG+ ++G+
Sbjct: 353 SHRLSTLLEFFEDLPFKFSEYSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGL 412
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +HS+
Sbjct: 413 RYVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSL 472
Query: 420 PSSLIESLRPVYKSG 434
P +E+LRPV+ S
Sbjct: 473 PEESVETLRPVFSSA 487
>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3
Length = 666
Score = 292 bits (747), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 177/455 (38%), Positives = 250/455 (54%), Gaps = 48/455 (10%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 217 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 276
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 277 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK----- 331
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 332 --------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 383
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A L+ + V P L K++ SATL
Sbjct: 384 WLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATL 434
Query: 232 TQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +Y P L + + C KPL
Sbjct: 435 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 494
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 495 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 552
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 553 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 612
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 613 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 647
>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1
Length = 652
Score = 291 bits (744), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 175/451 (38%), Positives = 246/451 (54%), Gaps = 45/451 (9%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS
Sbjct: 208 GIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSK 267
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R VR +RAL VLPT++LA QV +VF+A L V + GQ S A E + L ++
Sbjct: 268 RVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRG 324
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G+ + S DI+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+
Sbjct: 325 GVSH----------SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQS 374
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V + S + S F + G + P L K++ SATL
Sbjct: 375 WLSQVTKAVYSTPGE--THTSVFRRTVPGPITAASLS--------PPQIPLQKLLFSATL 424
Query: 232 TQDPNKLAQLDLHHP-LFLTT---------GETRYKLPERLESYKLICESKLKPLYLVAL 281
TQ+P KL LDLH P LF +T + + P+ L Y + C KPL ++
Sbjct: 425 TQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHF 484
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
L L + FT+S E HRL L+ FG +++ E+S R KTLK F +GKI
Sbjct: 485 LLRLKFSPALCFTNSREGAHRLYLLVKLFGG--VEVAEFSSKLSPGERQKTLKDFEKGKI 542
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+L+S+DA RG+D+ GV V+NYD P YI+TYIHR GRTARAG+ G FT L K + KR
Sbjct: 543 PLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKR 602
Query: 402 FKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
F K++ A + + ++S+ Y+
Sbjct: 603 FLKMVSDAGSPGIQKQHVHPEALKSMESRYE 633
>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1
Length = 639
Score = 281 bits (719), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 170/461 (36%), Positives = 250/461 (54%), Gaps = 55/461 (11%)
Query: 2 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI+S FPVQ AV IG G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 189 GITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 248
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF L V L GQ S+A E L+++
Sbjct: 249 RVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK----- 303
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 304 --------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 355
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLS 228
WLP V+ A+ + GS ++R + P L K++ S
Sbjct: 356 WLPRVVA------------AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFS 403
Query: 229 ATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKL 273
ATLTQDP KL +L L+ P +T +Y P L + + C
Sbjct: 404 ATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSS 463
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333
KPL ++ L+ + + + FT+S E++HRL L FG + + E+S R K L
Sbjct: 464 KPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKIL 521
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
K F +GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTL
Sbjct: 522 KQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTL 581
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 434
L K + ++F +++ +A H IP L++ L Y++
Sbjct: 582 LLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETA 622
>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium
discoideum GN=ddx51 PE=3 SV=1
Length = 563
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 259/460 (56%), Gaps = 43/460 (9%)
Query: 2 GISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 58
I +LFPVQ V T G D+C+ +PTGSGKTL+YA+P+VQ + R VR +R
Sbjct: 34 SIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVR 88
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
V++PT DL +QV+ F +I L V L++G E LIK Y
Sbjct: 89 VAVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHSYGEHALY--- 144
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL V+
Sbjct: 145 ------ESLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVID 198
Query: 179 LTRSDNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP------RLVKMVLSATL 231
T ++ N+ + ++ G ++ + + ++ +LVK++LSAT+
Sbjct: 199 STNQHSDLNQQQEEQLIKYNSKGDIELFEKSISLKDNNNQMNHLCWSEFKLVKLLLSATM 258
Query: 232 TQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVALL-QSL-- 285
T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL L+ ++ +SL
Sbjct: 259 TYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYESLLK 318
Query: 286 ------GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAF 336
++K I FT SV+ THRL TLL G+ L+ +EYS R+ L F
Sbjct: 319 NNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYSSSLSTVERADLLSRF 378
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+ +I +L+ SD M+RGMD++ ++ V+NY+ P I Y+HR GRTARAG G +T++ K
Sbjct: 379 KLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIVDK 438
Query: 397 DEVKRFKKLLQKADNDSCPIHSI--PSSLIESLRPVYKSG 434
E+K + +++KA+ S +H + ++ E + YK G
Sbjct: 439 SEIKYYISMMKKAER-SQTLHCLKWKPNVYEKFQSSYKLG 477
>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila
melanogaster GN=Dbp73D PE=2 SV=3
Length = 687
Score = 242 bits (617), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 229/442 (51%), Gaps = 58/442 (13%)
Query: 1 MGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R
Sbjct: 155 MKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDC 214
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALVVLP +LALQV V + + L V L Q + DE +L+++ K G Y
Sbjct: 215 KVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY 271
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 272 ----------SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYH 321
Query: 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235
+ + + A T P + L+ F +P+ K++ SATL+QDP
Sbjct: 322 LDSHVKETTDQLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDP 367
Query: 236 NKLAQLDLHHPLFLTTGET-------------------------RYKLPERLESYKLICE 270
KL L L P T T RY P L + E
Sbjct: 368 EKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTE 427
Query: 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVR 329
+LKPL + AL++ ++ + FT+S + RL +L F + K+ E SG VR
Sbjct: 428 LRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVR 487
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
++ L+ F GKI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G
Sbjct: 488 NERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGT 547
Query: 390 CFTLLHKDEVKRFKKLLQKADN 411
T+L + ++ FKK+L A+
Sbjct: 548 AVTVLTEQDMTLFKKILSDANK 569
>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp6 PE=2 SV=1
Length = 604
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 221/440 (50%), Gaps = 62/440 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
I+ F VQ AV + G + D+C+++ TGSGKTLSY +PIVQ LS+R V
Sbjct: 145 NITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVP 204
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
LR +V++PTR+L +QV F GL V GQ S+ E +L
Sbjct: 205 RLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG---------- 254
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
E + +D+LV+TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ T
Sbjct: 255 ------DENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDT 308
Query: 176 VLQLTRS----DNENRFSD-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 226
V+ N++ D + TFLP +L R P P L K+V
Sbjct: 309 VMMEISHPKCLQNKSNILDLDQNISPTFLPD-IDTLLPYRL----------PSP-LQKLV 356
Query: 227 LSATLTQDPNKLAQLDLHHPLFLTT----------GETR-----YKLPERLESYKLICES 271
SATLT+DP+K+A L LH+P + GE + +P L+ Y + S
Sbjct: 357 FSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSS 416
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQSV 328
+ KP+ L L+ S + F S E+ HRL L++ ++ +
Sbjct: 417 E-KPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDE 475
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R K + F G + +LV SD M RG+DV NV+NYD P +++Y+HR GRTARAG+ G
Sbjct: 476 RKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREG 535
Query: 389 RCFTLLHKDEVKRFKKLLQK 408
+TL+ E F KL+++
Sbjct: 536 FAWTLVQSHEGHHFSKLVKQ 555
>sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1
Length = 593
Score = 211 bits (538), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 161/414 (38%), Positives = 219/414 (52%), Gaps = 49/414 (11%)
Query: 19 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78
GP DLCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++
Sbjct: 158 GPTNHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACEL 217
Query: 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
A GL V AVG +I DE E + G + E VDIL+ TPGRL
Sbjct: 218 CAAGSGLRVASAVGNVAIKDEQRESL------PGYVHRSE-------PNVDILICTPGRL 264
Query: 139 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
+DH+ T+GFTL++L +LV+DE DRLL E++Q W+ V+ S + P A
Sbjct: 265 VDHLRYTKGFTLKNLEWLVIDEADRLLNESFQEWVDVVMT----------SLDARKAPDA 314
Query: 199 FG-SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG----- 252
FG S + G+ K+ PR K+VLSAT+T+D KL L L +P + G
Sbjct: 315 FGFSGNFLSGLGLPIQSKE---PR--KVVLSATMTRDVTKLNSLRLANPKLVVIGSDAAA 369
Query: 253 -----------ETRYKLPERLESYKL-ICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 298
+ ++ LP LE + + + + KPLYL+ LL S E K +VFT S E
Sbjct: 370 TEDESGGVAPSDEQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKLETKILVFTKSSE 429
Query: 299 STHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
S RL LL L +I + S KTL A+R GKI V++++D +RG+D+
Sbjct: 430 SASRLARLLALLEPSLSDRIGTIIKSNKSSASRKTLTAYRRGKISVIIATDRASRGLDLR 489
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
+ +VVNYD PA I TY+HR GRTARAGQ G +TL+ E K F + K +
Sbjct: 490 SLTHVVNYDVPASITTYVHRVGRTARAGQKGSAWTLVAHREGKWFASQIAKGSD 543
>sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP6 PE=3 SV=1
Length = 663
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 218/432 (50%), Gaps = 77/432 (17%)
Query: 1 MGISSLFPVQVAVWQE--------TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
+G + F VQV V + + P F D+ +N+ TGSGKTL+Y++PI+++L +R
Sbjct: 240 LGFENAFAVQVGVLSKLLPEIQANKLRPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDR 298
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V +RA+V++PT+ L QV+ +A L++ SI +E LI
Sbjct: 299 VVPRVRAIVLVPTKPLINQVRATMLQLALGTNLNIVSLKNDISIREESERLI-------- 350
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+ D++++TPGRL++H+ A +L L YLVVDE DRLL +++Q W
Sbjct: 351 ------------ELVPDVVISTPGRLVEHL-AMDSISLSSLRYLVVDEADRLLNQSFQNW 397
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
++ ++ + + SLK + K + SATLT
Sbjct: 398 SQILI--------SKIHLQQVYDVANVWSLK------------------VQKFIFSATLT 431
Query: 233 QDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQ 283
D KLA LD H+P L +++ + +P L YKL + +S LKPL L L
Sbjct: 432 TDAGKLASLDFHNPRLLIVNDSQRLVNELFSVPAMLSEYKLNFGVAKSSLKPLILAKFL- 490
Query: 284 SLGEEK---CIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGL-----QRQSVRSKTLK 334
+ +EK +VFT S ES+ RLCTLL F + ++ K G R S+RSK LK
Sbjct: 491 -IAQEKLSDVLVFTKSNESSIRLCTLLQAIFDRICLQEKVKVGFMNLTNNRTSLRSKILK 549
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F KI +LV++D + RG+DV + +VVNYD + Y+HR GRTARA Q G + L+
Sbjct: 550 DFTSQKINILVATDLIARGLDVTSIKDVVNYDLLNSSREYVHRVGRTARANQAGNAYNLV 609
Query: 395 H-KDEVKRFKKL 405
K E K FK +
Sbjct: 610 FGKGEEKWFKTI 621
>sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP6 PE=3 SV=2
Length = 591
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/396 (32%), Positives = 201/396 (50%), Gaps = 64/396 (16%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+ +N+ TGSGKTL+Y++PI++ L NR V +RA+V++PT+ L QVK F ++ L
Sbjct: 203 DILVNAATGSGKTLAYSIPIIEALHNRVVPRVRAIVLVPTKPLINQVKATFVQLSRGTNL 262
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
SV SI +E +++ P DI+V+TPGRL++HI +
Sbjct: 263 SVVSLRNDVSIKEEGIKIVNSPP--------------------DIIVSTPGRLVEHI-SN 301
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
+ L L +LV+DE DRLL +++Q W ++ D
Sbjct: 302 KSINLNSLQFLVIDEADRLLNQSFQNWCQVLISSLEGD---------------------- 339
Query: 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------YKLP 259
+ +K P K++ SATLT D KL+ L P + + + + +P
Sbjct: 340 --VNIAEEWKITPQ----KLIFSATLTTDSGKLSALKFQKPRLVIVNDRKQLVNEIFNVP 393
Query: 260 ERLESYKL---ICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELR 314
L Y + ++ +KPL L LL++ ++FT S E++ RLC LL FG+L
Sbjct: 394 SSLSEYTIQFGTAKASIKPLILAKYLLENNKLSNVLIFTKSNEASIRLCKLLELMFGKLH 453
Query: 315 IKIK-EY--SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+ Y S + ++R+K LK F KI +LV++D + RG+D+ + +V+NYD P
Sbjct: 454 PSMNIAYINSTNNKSAIRTKILKDFSTQKINILVATDLIARGIDILSITDVINYDLPNSS 513
Query: 372 KTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLL 406
+ Y+HR GRTARA Q G +TL K E K FKK++
Sbjct: 514 REYVHRVGRTARANQTGHAYTLCFGKGEAKWFKKII 549
>sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP6 PE=3 SV=2
Length = 576
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 144/432 (33%), Positives = 217/432 (50%), Gaps = 73/432 (16%)
Query: 1 MGISSLFPVQVAVW--------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 52
MG S F VQ++V + + P + DL +N+ TGSGKTL+Y++PI+++L
Sbjct: 148 MGFESAFSVQISVLNLMLKDIERNRLQPDM-RGDLLVNASTGSGKTLAYSIPIIESLQTV 206
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V +RA++++PT+ L QVK ++ LS+ S+ +++S IK E G
Sbjct: 207 KVPRVRAIILVPTKPLINQVKTTLNQLSKGTNLSI------VSLKNDLS--IK----EEG 254
Query: 113 ICYDPEDVLQELQSAV-DILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQ 170
I +LQ+ DI+V+TPGRL+DH+ T G+ +L++L YLV+DE DRLL +++Q
Sbjct: 255 I---------KLQTNEPDIIVSTPGRLVDHL--TNGYISLKNLQYLVIDEADRLLNQSFQ 303
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W L S I+ + +K + KM+ SAT
Sbjct: 304 NW-------------------CQILISKIDEFTNIKERNISNSWK----LNVQKMIFSAT 340
Query: 231 LTQDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVAL 281
LT D KL+ L H P + + LP L +KL +S LKPL L
Sbjct: 341 LTTDAGKLSLLKFHKPRLIIVNNKEQLVNEMFSLPATLNEFKLQFGSAKSSLKPLILSKF 400
Query: 282 LQSLGE-EKCIVFTSSVESTHRLCT----LLNHFGELRIKIKEYSGLQRQ-SVRSKTLKA 335
L S + ++FT S +++ RL ++N G I I + SVRSK LK
Sbjct: 401 LLSKNKLANVLIFTKSNDASLRLSRLLSLIMNKLGSETINIAYINSTNNTTSVRSKILKD 460
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-L 394
F + I +LV++D + RG+D+ + +V+NYD P + Y+HR GRTARA Q G +
Sbjct: 461 FSKQTINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQEGFAYNFCF 520
Query: 395 HKDEVKRFKKLL 406
K E K FKKL+
Sbjct: 521 GKGEAKWFKKLM 532
>sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP6 PE=3 SV=2
Length = 631
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 220/434 (50%), Gaps = 80/434 (18%)
Query: 2 GISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 53
G SS F VQV+V + + I P + DL +N+ TGSGKTL YA+PI+++L NR
Sbjct: 210 GFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRI 268
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V +RA+V++PT+ L QVK FA ++ LSV SI DE
Sbjct: 269 VPRVRAIVLVPTKPLISQVKATFAMLSKNTNLSVVSLRSDISINDEA------------- 315
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAW 172
Q LQ DI+V+TPGRL++H+ T G L+ L YLV+DE DRLL +++Q W
Sbjct: 316 --------QRLQVVPDIIVSTPGRLVEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNW 365
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
T+ ++R D+ N S+ +T R P + K+V SATLT
Sbjct: 366 CETL--MSRIDS-NPISELD----------QTWR-------------PSVQKLVFSATLT 399
Query: 233 QDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQ 283
D +L+ L L P + + + +P L+ YKL S KPL L L
Sbjct: 400 TDAGRLSMLKLQRPRLIIVNDRHELVNELFTVPATLQEYKLSLGSARSSAKPLVLAKFLM 459
Query: 284 SLGEEKCI---VFTSSVESTHRLCTLLNH----FGELRIKIKEYSGLQR-QSVRSKTLKA 335
S E+K + VF S E++ RLC LL FG L + + + S R+K LK
Sbjct: 460 S--EQKLVNTLVFAKSNEASLRLCRLLQLLFRVFG-LDVTVSYLNSTNNAASTRAKILKD 516
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-L 394
F + +LV +D + RG+D+ + NV+NYD P + Y+HR GRTARA Q G +T+
Sbjct: 517 FANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVHRVGRTARANQDGEAYTMCF 576
Query: 395 HKDEVKRFKKLLQK 408
K E K F +L+++
Sbjct: 577 GKGETKWFTQLVRE 590
>sp|A7TFZ9|DBP6_VANPO ATP-dependent RNA helicase DBP6 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP6 PE=3 SV=1
Length = 637
Score = 192 bits (488), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 140/417 (33%), Positives = 209/417 (50%), Gaps = 85/417 (20%)
Query: 7 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 53
FP+Q ++ ET+ P L F R D+ +N+ TGSGKTL+Y++PI+Q LS R
Sbjct: 199 FPIQ-SILLETLLPTLNFSYNITKKNFTRRVGDVLVNASTGSGKTLAYSIPILQILSKRT 257
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V LRALV++PT+ L QV + F +A L V ++ ++S+ +E +L
Sbjct: 258 VNKLRALVIVPTKLLINQVYETFNNLAQGTSLIVSISKLENSLKEENKKL---------- 307
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
LQ+ DIL+ TPGRL+DH+ + L +L +LV+DE DRLL +++Q W
Sbjct: 308 ----------LQNEPDILITTPGRLVDHLQSG-AVNLRNLKFLVLDEADRLLNQSFQNWC 356
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L ++D ++ +P +VKMV SATLT
Sbjct: 357 NELLNKLKTDKQDH-------MPG-----------------------NIVKMVFSATLTT 386
Query: 234 DPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEK 289
+ KL L ++P LF+ Y LP L+ Y L ++ KPL+L+ LL + K
Sbjct: 387 NTEKLHGLQFYNPKLFVMDSVKLYHLPRMLQEYNLHIPTAKTSYKPLFLLRLLSEINGSK 446
Query: 290 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA------------FR 337
+VF S ES+ RL +L + I+ K S SV S KA
Sbjct: 447 MLVFVKSNESSLRLASL----LSIMIEHKLGSQFDINSVNSNNTKAENRRIVNEFASNNN 502
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
K+QVL+++D M+RG+D+ + +V+NYD P + YIHR GRTARA G + +L
Sbjct: 503 TSKVQVLITTDVMSRGVDINDITDVLNYDVPISSQQYIHRCGRTARAQSKGTAYNML 559
>sp|Q6FST5|DBP6_CANGA ATP-dependent RNA helicase DBP6 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP6 PE=3 SV=1
Length = 651
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 213/415 (51%), Gaps = 76/415 (18%)
Query: 5 SLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNR 52
S FP+Q A+ + + F R D+ +N+ TGSGKTL+Y++PI+QTLS+R
Sbjct: 215 STFPIQTAMLDQYLKLINFTLKTSKKNFTRRIGDILVNASTGSGKTLAYSIPIIQTLSSR 274
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
V LR L++LPT+ L QV + +A L + ++ ++S +E L+K
Sbjct: 275 TVNKLRVLIILPTKLLINQVFQTMSQLAEGTSLVITVSKLENSFNEEHKRLLK------- 327
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
+ DI + TPGRL+DH+ +L +L +LV+DE DRLL +++Q W
Sbjct: 328 -------------TEPDIFITTPGRLVDHL-TNSSISLRNLKFLVLDEADRLLNQSFQNW 373
Query: 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232
+P V+ +SD ++ +P + ++KMV SATLT
Sbjct: 374 IPEVMSKFKSDKFDQ-------MPGS-----------------------IIKMVFSATLT 403
Query: 233 QDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEE 288
+ KL L L++P LF T Y LP L+ Y+L +S KPLYL+ LL+ L
Sbjct: 404 TNTEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVYKPLYLLKLLEQLSGG 463
Query: 289 KCIVFTSSVESTHRLCTLLN-----HFGELRIKIKEYSGLQRQSVRSKTLKAFRE----G 339
K +VF S ES+ +L LL H L+I + + ++ + + F +
Sbjct: 464 KTLVFVRSNESSLKLEVLLKSLIKGHMTTLQIVVHSINSNNSKAENRRLVTDFTKESLPN 523
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ VL+++D M+RG+D+E + NV+NYD P + Y+HR GRTARA + G+ + +L
Sbjct: 524 QTNVLITTDLMSRGIDIENIANVINYDVPISSQQYVHRCGRTARANKDGKAYNML 578
>sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP6 PE=3 SV=1
Length = 606
Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 210/427 (49%), Gaps = 71/427 (16%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER-------DLCINSPTGSGKTLSYALPIVQTLSNRA 53
MG + F VQ++V + ++ D+ +N+ TGSGKTL+Y++PI+++L R
Sbjct: 187 MGFTEAFSVQISVLNMMLPEIEAQKLKPDRVGDILVNASTGSGKTLAYSIPIIESLYRRV 246
Query: 54 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
V +R ++++PT+ L QVK ++ L + SI DE L K
Sbjct: 247 VPRVRVIILVPTKPLINQVKSTLLQLSSGTNLQIAALKNDVSINDEKDSLTK-------- 298
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
S DI+V+TPGRL++H+ L L YL++DE DRLL +++Q W
Sbjct: 299 ------------SVPDIIVSTPGRLVEHL-LNDSINLSSLQYLIIDEADRLLNQSFQNWS 345
Query: 174 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233
+L S ++ + + V+ K+V SATLT
Sbjct: 346 NVLLDKIDSQ----------------INIAEVWKLSVQ------------KLVFSATLTT 377
Query: 234 DPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQS 284
D KL+ L ++P + +++ + +P L +K+ + ++ LKPL L L S
Sbjct: 378 DAGKLSSLKFYNPRLIIVNDSKQLVNEIFTVPVTLSEFKIHLGVAKNSLKPLILTKFLIS 437
Query: 285 LGE-EKCIVFTSSVESTHRLCTLL-NHFGELRIKIKE---YSGLQRQSVRSKTLKAFREG 339
+ ++FT S ES+ RL LL + F +L I +K S R S+RSK LK F
Sbjct: 438 TNKLSNVLIFTKSNESSIRLTELLISLFQKLSINLKIAFINSTNNRTSIRSKILKQFSNQ 497
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDE 398
++ +L+++D + RG+DV + +V+NYD P + Y+HR GRTARA Q+G ++ K E
Sbjct: 498 EVNILITTDLIARGIDVASITDVINYDLPNSSREYVHRVGRTARANQVGYAYSFCFGKGE 557
Query: 399 VKRFKKL 405
F KL
Sbjct: 558 NSWFNKL 564
>sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP6 PE=1 SV=1
Length = 629
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 227/473 (47%), Gaps = 94/473 (19%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 285
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 286 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 328
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 329 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 385 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>sp|A6ZSB3|DBP6_YEAS7 ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP6 PE=3 SV=1
Length = 629
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 227/473 (47%), Gaps = 94/473 (19%)
Query: 4 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 50
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 51 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 110
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 111 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 285
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSIYKPLILLYSICQFM 442
Query: 286 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 328
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 329 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHPSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 385 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSG 434
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSS 615
>sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP6 PE=3 SV=1
Length = 630
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 211/422 (50%), Gaps = 83/422 (19%)
Query: 4 SSLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGKTLSYALPIVQTLSN 51
S FP+Q ++ + + LF R D+ +N+ TGSGKTL+Y++P+VQ L +
Sbjct: 196 SETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRS 255
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RA++++PT+ L QV D + ++ L+V ++ ++S+ +E ++
Sbjct: 256 RTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKF-------- 307
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
L ++ DIL+ TPGRL+DH+ F L+ L +LV+DE DRLL +++Q
Sbjct: 308 ------------LYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLVLDEADRLLNQSFQN 354
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
W + +D ++ +R G ++KMV SATL
Sbjct: 355 WNQVLFHHLTNDKQD-------------------KRPG-----------NVIKMVFSATL 384
Query: 232 TQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGE 287
T + KL L LH+P +FLT Y +P++L+ + +S KPL L+ ++ +
Sbjct: 385 TTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKS 444
Query: 288 E-----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEY--------SGLQRQSVRSKTLK 334
K +VF S E++ RL +LL+ I EY S + + S R K ++
Sbjct: 445 SASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLSSIHSNISKGSSR-KLIQ 503
Query: 335 AF--REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
F E K VL+S+D M RG+D+ + +V+NYD P + Y+HR GRTARA G
Sbjct: 504 EFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAIN 563
Query: 393 LL 394
LL
Sbjct: 564 LL 565
>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47
PE=2 SV=2
Length = 455
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47
PE=2 SV=1
Length = 457
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 146
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 286 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 342
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
>sp|Q751D1|DBP6_ASHGO ATP-dependent RNA helicase DBP6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP6
PE=3 SV=1
Length = 607
Score = 182 bits (461), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 207/413 (50%), Gaps = 76/413 (18%)
Query: 7 FPVQVAVWQE---------TIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNRAV 54
FP+Q A+ ++ + R D+ +N+ TGSGKTL+YA+ ++ LS R V
Sbjct: 185 FPIQTALLDSVLPLMSQAYSVSKRYYTRKVGDILVNASTGSGKTLAYAMLLIHILSRRTV 244
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
LRA++++PT+ L QV D A+A + V ++ +S+ +E ++L +
Sbjct: 245 NKLRAVILVPTKLLVHQVYDTVQALAKGSSVVVAVSKMDTSLKEESAKLKAQ-------- 296
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
+P D+L+ TPGRL+DH+N + F+L++L +LV+DE DRLL +++Q W
Sbjct: 297 -EP-----------DVLIITPGRLVDHLN-MQTFSLKNLKFLVLDEADRLLNQSFQNWC- 342
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
++ + R ER FK ++KM+ SATLT +
Sbjct: 343 ---------------------------IELMTRLNAERPFKGP--GNVIKMIFSATLTTN 373
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEE--K 289
+L L LH+P G Y +P +L+ Y L +S KPL L+ LL L E +
Sbjct: 374 TERLHDLQLHNPKLFLMGSQLYHMPAQLQEYNLPIPTSKSYAKPLILLRLLPLLSTESLR 433
Query: 290 CIVFTSSVESTHRLCTLL-----NHFGELRIKIKEYSGLQRQSVRSKTLKAF---REGKI 341
+VF S E++ RL LL N + + + ++ K ++AF G
Sbjct: 434 ILVFVKSNEASIRLAALLTAMVGNGLSAVSTTVGSINNNNSKATNRKLIEAFAAGASGHC 493
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+LVS+D M+RG+D+ G+++V+NYD P + Y+HR GRTARA G LL
Sbjct: 494 SILVSTDLMSRGLDISGISHVINYDLPISSQQYVHRCGRTARANTSGTAVNLL 546
>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis (strain
RS) GN=RRP3 PE=3 SV=1
Length = 474
Score = 182 bits (461), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 193/398 (48%), Gaps = 65/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P Q+ E+I L RDL + TGSGKT ++ALPI+Q L ++ + + LV+ PTR+
Sbjct: 71 PTQIQA--ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKP-QSMFGLVLAPTRE 127
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ F A+ + + + VG + + L K+P
Sbjct: 128 LAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPH------------------- 168
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L++
Sbjct: 169 --IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKV-------- 218
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
LP RR + SAT++ L + L +PL
Sbjct: 219 -------LPKE-------RRT----------------YLFSATMSSKVESLQRASLSNPL 248
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++ +Y+ L LI K K +YL+ LL + I+FT +V T RL LL
Sbjct: 249 RVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAILL 308
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
G I + G QS R L FR +LV++D RG+D+ V+ V+NYD
Sbjct: 309 RALGFGAIPLH---GQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDL 365
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P+ KTYIHR GRTARAG+ GR F+L+ + +V+ ++++
Sbjct: 366 PSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRI 403
>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47
PE=1 SV=1
Length = 455
Score = 181 bits (460), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 188 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP6 PE=3 SV=1
Length = 607
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 208/417 (49%), Gaps = 61/417 (14%)
Query: 1 MGISSLFPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 54
+G + F VQ AV W Q+ + P + DL +++ TGSGKT +Y +PI++ L +R V
Sbjct: 206 LGYTKAFSVQKAVIPWLLAQQKLLAPDR-KPDLLVSASTGSGKTATYGIPIIEKLRDRIV 264
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
+RA+VVLPT+ L +QV+DV ++ LSV ++ ++ S +R LE
Sbjct: 265 PRIRAVVVLPTKPLVMQVRDVLENLSKGSSLSV------VALRNDRSTKRERAVLETA-- 316
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
DI+VA PGRL++ + ++ +LVVDE DRLL + Y W
Sbjct: 317 --------------DIVVAAPGRLVEQVKENPEL-FSYIEFLVVDEADRLLGQDYYDW-A 360
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
+VLQ +N+ R T L + +R + ++ SATLT +
Sbjct: 361 SVLQ----NNQQRAQAGKTNLTEHY-----VR--------------NMQTLIFSATLTAN 397
Query: 235 PNKLAQLDLHHP-LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 293
P +A +D+H+P +F+ Y +P+ L + KPL L LL + +VF
Sbjct: 398 PEHIASMDIHNPGVFVIGSSDSYSIPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVF 457
Query: 294 TSSVESTHRLCTLLN----HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
T S E+ R+ ++ KI S R +++K F +GKI LV +D
Sbjct: 458 TKSSETAARVARMMEIMDADIFHKDWKIAAVSAETSSVHRRRSMKQFIDGKIDFLVCTDL 517
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKL 405
++RG+D V+NV+NYD P+ + Y+HR GRTARAG+ G +T L E K F+++
Sbjct: 518 VSRGIDF-VVDNVINYDIPSGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFREI 573
>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rrp-3 PE=3 SV=1
Length = 515
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 186/394 (47%), Gaps = 67/394 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G + P+Q +++I L RD+ + TGSGKT ++ALPI+Q L ++ L AL
Sbjct: 108 LGYKNPTPIQ----EQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPA-PLFAL 162
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 163 VLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH------------ 210
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++VATPGRL+DH+ T+GF+L + YLV+DE DRLL + L +L+
Sbjct: 211 ---------VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILK-- 259
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
FLP RR + SAT++ L +
Sbjct: 260 -------------FLPRE-------RRT----------------FLFSATMSSKVESLQR 283
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L PL ++ +Y L+S + K YLV L + I+FT +V T
Sbjct: 284 ASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTIIIFTRTVLET 343
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
R+ LL G I + + GL QS R L FR G ++LV++D RG+D+ V+
Sbjct: 344 QRIAILLRTLGMGAIPL--HGGLS-QSARLGALNKFRAGSREILVATDVAARGLDIPNVD 400
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
V+N+D P KTY+HR GRTARAG+ G +++
Sbjct: 401 CVINHDLPQDSKTYVHRVGRTARAGKSGHAISIV 434
>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DRS1 PE=3 SV=1
Length = 808
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 196/427 (45%), Gaps = 66/427 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALV 61
F + I L RD+ ++ TGSGKT ++ +PI++ L R C R LV
Sbjct: 242 FTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAAC-RVLV 300
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA+Q + V A+A GL V A+ L G+ + +
Sbjct: 301 LCPTRELAVQCEAVGKALAEKGGLDVRFAL-----------------LVGGLSLNAQ--A 341
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
L++ DIL+ATPGRL+DH+ T FTL L LV+DE DR+L + L +
Sbjct: 342 HTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEI----- 396
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
I+ C P R M+ SAT+T ++L +L
Sbjct: 397 -----------------------IKAC---------PRSRQT-MLFSATMTDSVDELVKL 423
Query: 242 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301
L P+ + R + + I + L+AL + EKCI+F S H
Sbjct: 424 SLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAH 483
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
++ + FG +K E G Q R + L F+ G + L+++D +RG+D++GV
Sbjct: 484 QMRIVFGLFG---LKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLASRGLDIKGVET 540
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
V+NYD P + Y HR GRTARAG+ GR +L+ + + K K +++A+ D IPS
Sbjct: 541 VINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQVRHRIIPS 600
Query: 422 SLIESLR 428
+ +++
Sbjct: 601 EAVTAMK 607
>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DRS1 PE=3 SV=1
Length = 808
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 196/427 (45%), Gaps = 66/427 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALV 61
F + I L RD+ ++ TGSGKT ++ +PI++ L R C R LV
Sbjct: 242 FTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAAC-RVLV 300
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA+Q + V A+A GL V A+ L G+ + +
Sbjct: 301 LCPTRELAVQCEAVGKALAEKGGLDVRFAL-----------------LVGGLSLNAQ--A 341
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
L++ DIL+ATPGRL+DH+ T FTL L LV+DE DR+L + L +
Sbjct: 342 HTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEI----- 396
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
I+ C P R M+ SAT+T ++L +L
Sbjct: 397 -----------------------IKAC---------PRSRQT-MLFSATMTDSVDELVKL 423
Query: 242 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301
L P+ + R + + I + L+AL + EKCI+F S H
Sbjct: 424 SLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAH 483
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
++ + FG +K E G Q R + L F+ G + L+++D +RG+D++GV
Sbjct: 484 QMRIVFGLFG---LKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLASRGLDIKGVET 540
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
V+NYD P + Y HR GRTARAG+ GR +L+ + + K K +++A+ D IPS
Sbjct: 541 VINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQVRHRIIPS 600
Query: 422 SLIESLR 428
+ +++
Sbjct: 601 EAVTAMK 607
>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=rrp3 PE=3 SV=1
Length = 472
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 183/399 (45%), Gaps = 63/399 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
+ A+ E I L RDL + TGSGKT ++ALPI+Q L ++ LV+ PTR
Sbjct: 72 YKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFF-GLVLAPTR 130
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ F + + + + VG + + L K+P
Sbjct: 131 ELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH------------------ 172
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 173 ---IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKV------- 222
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
LP RR + SAT++ L + L +P
Sbjct: 223 --------LPRE-------RRT----------------YLFSATMSSKVESLQRASLQNP 251
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
L + ++++ L+ + K K LYLV LL + CI+F +V T RL
Sbjct: 252 LRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFF 311
Query: 307 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
L G I + G QS R L FR +LV++D RG+D+ V+ V+N+D
Sbjct: 312 LRLLGFGAIPLH---GQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFD 368
Query: 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
P KT+IHR GRTARAG+ G + + +V+ + ++
Sbjct: 369 LPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRI 407
>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP3 PE=1 SV=2
Length = 501
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 198/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 107 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 165
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 166 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 204
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 252
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 253 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 287
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 288 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 343
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R +L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 344 LEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 403
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 458
>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae
(strain YJM789) GN=RRP3 PE=3 SV=1
Length = 501
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 197/419 (47%), Gaps = 70/419 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 107 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 165
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K+ F ++ +G+ VG ++ D+ +L+++P I++
Sbjct: 166 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH---------------------III 204
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L++
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII------------ 252
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
P + SAT+T +KL + L +P+
Sbjct: 253 -------------------------PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 287
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+Y+ + L ++ LK YL+ LL + I+FT + + RL L N
Sbjct: 288 -NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL--- 343
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
L G Q+ R L F+ GK +LV++D RG+D+ V+ VVNYD P K
Sbjct: 344 LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 403
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADNDSCPIHSIPSSLIESLR 428
+YIHR GRTARAG+ G+ +L+ + +++ R +++L K P S+ ++I +LR
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK----KLPKESVDKNIILTLR 458
>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=rrp3 PE=3 SV=2
Length = 445
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 188/400 (47%), Gaps = 69/400 (17%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
+G ++ P+Q + I L RDL + TGSGKT ++ LP++Q L ++ + +L
Sbjct: 46 LGYTAPTPIQ----ERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKP-QQFHSL 100
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA Q+ A+ + + L +G + + L K+P
Sbjct: 101 ILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPH------------ 148
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L+L
Sbjct: 149 ---------VIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRL- 198
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
LP K K Y + SAT++ L +
Sbjct: 199 --------------LP------------------KRKTY------LFSATMSSKVESLQR 220
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
L P+ ++ + L+SY L K K YLV LL + I+FT +V T
Sbjct: 221 ASLSDPVRVSVSTKNQTASKLLQSY-LFIPHKFKDFYLVYLLNERAGQMGIIFTRTVHET 279
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RL +L + G I I G QS R +L FR +L+++D RG+D+ V+
Sbjct: 280 QRLSIMLRNLGFPAIPIH---GQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVD 336
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
V+NYD P KTYIHR GRTARAG+ G F+ + + EV+
Sbjct: 337 YVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVE 376
>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RRP3 PE=3 SV=1
Length = 484
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 189/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ E I L +D+ + TGSGKT +++LPI+QTL + ALV+ PTR+LA Q+
Sbjct: 64 IQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENP-QPFFALVLAPTRELAYQI 122
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
++ +G+ + VG + + L KRP I+V
Sbjct: 123 SQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH---------------------IIV 161
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L+ L YLV+DE DRLL + + +L++ + +
Sbjct: 162 ATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKER-------N 214
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T KL + L+ P+ +
Sbjct: 215 TYL-------------------------------FSATMTTKVAKLQRASLNKPVRVEV- 242
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y L + L+ K K YL+ L L ++FT +V + RL +L G
Sbjct: 243 SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSSMMIFTRTVADSQRLSIILRRLGF 302
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS+R +L F+ G +LV++D +RG+D+ V+ V+NYD P K
Sbjct: 303 PAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSK 359
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 360 DYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RRP3 PE=3 SV=1
Length = 484
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 189/393 (48%), Gaps = 64/393 (16%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ E I L +D+ + TGSGKT +++LPI+QTL + ALV+ PTR+LA Q+
Sbjct: 64 IQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENP-QPFFALVLAPTRELAYQI 122
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
++ +G+ + VG + + L KRP I+V
Sbjct: 123 SQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH---------------------IIV 161
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRLMDH+ T+GF+L+ L YLV+DE DRLL + + +L++ + +
Sbjct: 162 ATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKER-------N 214
Query: 193 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252
T+L SAT+T KL + L+ P+ +
Sbjct: 215 TYL-------------------------------FSATMTTKVAKLQRASLNKPVRVEV- 242
Query: 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
++Y L + L+ K K YL+ L L ++FT +V + RL +L G
Sbjct: 243 SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSSMMIFTRTVADSQRLSIILRRLGF 302
Query: 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 372
I + G QS+R +L F+ G +LV++D +RG+D+ V+ V+NYD P K
Sbjct: 303 PAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSK 359
Query: 373 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 360 DYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>sp|A4RGD1|RRP3_MAGO7 ATP-dependent rRNA helicase RRP3 OS=Magnaporthe oryzae (strain
70-15 / ATCC MYA-4617 / FGSC 8958) GN=RRP3 PE=3 SV=1
Length = 538
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 181/390 (46%), Gaps = 67/390 (17%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 130 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 188
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ F A+ ++ L + VG + + + L K+P
Sbjct: 189 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH------------------ 230
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 231 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 279
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
FLP RR + SAT++ L + L P
Sbjct: 280 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 309
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 310 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 369
Query: 307 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 370 LRTLSFGAIPL-----HGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 424
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+D P TYIHR GRTARAG+ GR +++
Sbjct: 425 FDMPQDSMTYIHRVGRTARAGRSGRAISII 454
>sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DRS1 PE=1 SV=2
Length = 752
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 256 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 311
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 312 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 354
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 355 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 410
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 411 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 432
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 433 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 486
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 487 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 543
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 544 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
>sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DRS1 PE=3 SV=1
Length = 754
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 188/400 (47%), Gaps = 85/400 (21%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPT 65
P+Q A TI L +D+ + TGSGKT ++ +PI++ L + + R +V+LPT
Sbjct: 258 PIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPT 313
Query: 66 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 314 RELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP----------------- 356
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L S+
Sbjct: 357 ----DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR 412
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+N ++ SAT+ L L L
Sbjct: 413 QN--------------------------------------LLFSATMNSKIKSLVSLSLK 434
Query: 245 HPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSL---GEEKCIVFT 294
P+ + P + + KL E LKP L L++ L G+++ +VF
Sbjct: 435 KPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFV 488
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ E+ HRL ++ G L + + E G Q R ++ F+ ++ VL+ +D +RG+
Sbjct: 489 ARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGL 545
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 546 DIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 585
>sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=DRS1 PE=3 SV=1
Length = 808
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 200/422 (47%), Gaps = 70/422 (16%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 58
+G + P+Q + I + +D+ + TGSGKT ++ +PI++ L R V R
Sbjct: 303 IGFTEPTPIQA----KAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTR 358
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
+ +PTR+LA+Q +V +A ++ L G G +
Sbjct: 359 VAIFMPTRELAVQCFNVATKLASFTDITFALLAG-------------------GFSSREQ 399
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+V+ L++ D+++ATPGR +DH++ T F +EHL LV+DE DR+L E ++ L +L
Sbjct: 400 EVM--LKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEIL- 456
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
T +P + + M+ SAT+T +KL
Sbjct: 457 --------------TTIPKSRQT-----------------------MLFSATMTSTVDKL 479
Query: 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP--LYLVALLQSLGEEKCIVFTSS 296
++ + P+ L ++ + + + + + K YL+ + + + E+ I+F
Sbjct: 480 IRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYICEKIYTERVIIFFRQ 539
Query: 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356
+ HR+ + G +K E G Q R + ++AFR GK L+++D +RG+D+
Sbjct: 540 KKEAHRVRVVFALCG---LKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDVASRGLDI 596
Query: 357 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+ V+ V+NY+ P + Y+HR GRTARAG+ GR TL + + K K+ ++++ + +
Sbjct: 597 KNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQSRDQGSKV 656
Query: 417 HS 418
S
Sbjct: 657 VS 658
>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12)
GN=rhlE PE=1 SV=3
Length = 454
Score = 142 bits (357), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 76/406 (18%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRD 67
+ Q+ I L RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR+
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 87 LAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRGG 125
Query: 128 VDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
VD+LVATPGRL+D H NA + L+ + LV+DE DR+L
Sbjct: 126 VDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRML-------------------- 162
Query: 186 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 245
G + IRR P R ++ SAT + D LA+ LH+
Sbjct: 163 ------------DMGFIHDIRRV-----LTKLPAKRQ-NLLFSATFSDDIKALAEKLLHN 204
Query: 246 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 305
PL + R +++ + + K K L ++ ++ +VFT + + L
Sbjct: 205 PLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAE 263
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVNY
Sbjct: 264 QLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 408
+ P + Y+HR GRT RA G +L+ DE ++ +KLL+K
Sbjct: 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP8 PE=3 SV=2
Length = 441
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 182/391 (46%), Gaps = 66/391 (16%)
Query: 20 PGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78
P + + CI + TGSGKT+++A P++ S + LV+ PTR+LALQ+ + FAA
Sbjct: 33 PKILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDP-SGIYGLVLTPTRELALQIAEQFAA 91
Query: 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 138
+ ++ + V + VG I + EL +RP +VATPGRL
Sbjct: 92 LGSSMNIKVSVIVGGEDIVKQALELQRRPHF---------------------VVATPGRL 130
Query: 139 MDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 195
DHI + T L + YL++DE DRLL ++ L + S ++ + T L
Sbjct: 131 ADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNILPSTDKRQ-----TLL 185
Query: 196 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET- 254
+A T+ R KD+P P+ KL P+F+ ET
Sbjct: 186 FTA-----TV--TDAVRALKDRPVPK--------------GKL-------PVFIHEVETV 217
Query: 255 -RYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFG 311
+ +P L + S +K YL ++L + I+FT+ + L L
Sbjct: 218 DKVAIPSTLSVKYVFVPSYVKEAYLHSILNLPQYSDSLSIIFTNRTATAELLRRTLR--- 274
Query: 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 371
+L ++ Q+ R+ +L F+ G ++L+++D +RG+D+ V VVNYD PA
Sbjct: 275 KLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADA 334
Query: 372 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+IHR GRTARAG+ G +++ + +V R
Sbjct: 335 DDFIHRVGRTARAGRKGDAISIVAEKDVDRI 365
>sp|P0CQ82|DBP4_CRYNJ ATP-dependent RNA helicase DBP4 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DBP4 PE=3 SV=1
Length = 859
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 181/400 (45%), Gaps = 62/400 (15%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRAL 60
SS F + I P L RD+ ++ TGSGKTL++ +P+++ L + L A+
Sbjct: 77 SSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLERLYLEKWGPMDGLGAV 136
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA+Q I S GL +G + +E
Sbjct: 137 VISPTRELAVQTFMQLRDIGKYHNFSAGLVIGGKPLKEE--------------------- 175
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++IL+ATPGRL+ H+++T GF + LV+DE DRLL + L ++
Sbjct: 176 -QERLGRMNILIATPGRLLQHLDSTVGFDSSAVKVLVLDEADRLLDLGFLPALKAIV--- 231
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
+ FS T A GS P ++ SAT ++D LA+
Sbjct: 232 -----SHFSPVQT----APGS-----------------RPSRQTLLFSATQSKDLAALAK 265
Query: 241 LDLHHPLFLTTGETRYK--LPERLESYKLIC--ESKLKPLYLVALLQSLGEEKCIVFTSS 296
L L+ PL+++ + + +P LE Y + E KL L+ ++S + K IVF +S
Sbjct: 266 LSLYEPLYISCNKPGEEGVMPANLEQYYAVVPLERKLDALW--GFVKSHLKMKGIVFVTS 323
Query: 297 VESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ R+ + F L + + G Q+Q R + F K +L+ +D RG+
Sbjct: 324 GKQARRVRFIFETFRRLHPGLPLMHLHGKQKQPTRLDIFQRFSSSKSALLICTDVAARGL 383
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D V+ V+ D P + TYIHR GRTAR G T+L
Sbjct: 384 DFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTIL 423
>sp|P0CQ83|DBP4_CRYNB ATP-dependent RNA helicase DBP4 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DBP4 PE=3 SV=1
Length = 859
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 181/400 (45%), Gaps = 62/400 (15%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRAL 60
SS F + I P L RD+ ++ TGSGKTL++ +P+++ L + L A+
Sbjct: 77 SSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLERLYLEKWGPMDGLGAV 136
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA+Q I S GL +G + +E
Sbjct: 137 VISPTRELAVQTFMQLRDIGKYHNFSAGLVIGGKPLKEE--------------------- 175
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++IL+ATPGRL+ H+++T GF + LV+DE DRLL + L ++
Sbjct: 176 -QERLGRMNILIATPGRLLQHLDSTVGFDSSAVKVLVLDEADRLLDLGFLPALKAIV--- 231
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
+ FS T A GS P ++ SAT ++D LA+
Sbjct: 232 -----SHFSPVQT----APGS-----------------RPSRQTLLFSATQSKDLAALAK 265
Query: 241 LDLHHPLFLTTGETRYK--LPERLESYKLIC--ESKLKPLYLVALLQSLGEEKCIVFTSS 296
L L+ PL+++ + + +P LE Y + E KL L+ ++S + K IVF +S
Sbjct: 266 LSLYEPLYISCNKPGEEGVMPANLEQYYAVVPLERKLDALW--GFVKSHLKMKGIVFVTS 323
Query: 297 VESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ R+ + F L + + G Q+Q R + F K +L+ +D RG+
Sbjct: 324 GKQARRVRFIFETFRRLHPGLPLMHLHGKQKQPTRLDIFQRFSSSKSALLICTDVAARGL 383
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
D V+ V+ D P + TYIHR GRTAR G T+L
Sbjct: 384 DFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTIL 423
>sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DHH1 PE=3 SV=2
Length = 516
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 191/428 (44%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F V +E+I L RD+ + G+GKT S+ +P +Q + V ++A
Sbjct: 43 MGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPK-VNKIQA 101
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + +GL + G +S+ D+I L DP
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRL-----------NDP-- 148
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
V +LV TPGR++D + + + L V+DE D++L ++ + +L
Sbjct: 149 --------VHVLVGTPGRVLD-LASRKVADLSECPLFVMDEADKMLSREFKGIIEQIL-- 197
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
F P+ SL +P VK + LT K
Sbjct: 198 -------------AFFPTTRQSL-----------LFSATFPLAVKSFMDQHLT----KPY 229
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F + S
Sbjct: 230 EINLMDELTLRGISQFYAFVE--EKQKLHC--------LNTLFSKLQINQAIIFCN---S 276
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L EL Q R+K FR+GK++VLV SD +TRG+D++ V
Sbjct: 277 TNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAV 336
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L+ ++ K+ Q+ + I I
Sbjct: 337 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTE---IKPI 393
Query: 420 PSSLIESL 427
P+++ +SL
Sbjct: 394 PATIDKSL 401
>sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus
GN=Ddx52 PE=2 SV=1
Length = 598
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 182/414 (43%), Gaps = 64/414 (15%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + + I L R+L ++PTGSGKTL++++PI+ L + RALV+ PTR
Sbjct: 186 FQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTR 245
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ I+ G + + + +++IA + + P+
Sbjct: 246 ELASQIHRELIKISEGTGFRIHM-IHKAAIAAK--------------KFGPKS-----SK 285
Query: 127 AVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
DILV TP RL+ + G L + +LVVDE+D+L D +
Sbjct: 286 KFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLF----------------EDGK 329
Query: 186 NRFSD--ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243
F D AS FL P++ + + SAT D + +L+L
Sbjct: 330 TGFRDQLASIFLACT--------------------SPKVRRAMFSATFAYDVEQWCKLNL 369
Query: 244 HHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHR 302
+ + ++ G R E +E L S+ K L + L++ +VF S+E
Sbjct: 370 DNIVSVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKE 428
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
L L + G I + + Q R T+ +FR GKI VL+ + + RG+D +GVN V
Sbjct: 429 LFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLV 485
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 416
+NYD P YIHR GRT RAG G+ T +D+ + + CP+
Sbjct: 486 INYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>sp|A1CTZ2|DBP4_ASPCL ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=dbp4 PE=3 SV=1
Length = 823
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 183/420 (43%), Gaps = 68/420 (16%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRAL 60
SS F + I L RD+ + TGSGKTL++ +P+++ L R L AL
Sbjct: 66 SSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRRQWAEHDGLGAL 125
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 126 ILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREE--------------------- 164
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++ILV TPGR++ H++ T F +L LV+DE DR+L +Q + ++
Sbjct: 165 -QERLGRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIV--- 220
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
G L R+ ++ SAT T+ + LA+
Sbjct: 221 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 245
Query: 241 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L L P ++ ET P +L+ + +I K L + ++S + K +VF SS +
Sbjct: 246 LSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQKLDILWSFIRSNLKSKTMVFFSSGKQ 305
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+ H + I + G Q+Q R + F + K VL S+D RG+D V
Sbjct: 306 VRFVYESFRHM-QPGIPLMHLHGRQKQGGRLDIMTNFSQAKHCVLFSTDVAARGLDFPAV 364
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
+ V+ D P TYIHR GRTAR G+ GR L E + +L++ + PI I
Sbjct: 365 DWVIQMDCPEDADTYIHRVGRTARYGRDGRAVLFLDPSEE---EGMLKRLEQKKVPIEKI 421
>sp|Q6AZV7|DDX55_XENLA ATP-dependent RNA helicase DDX55 OS=Xenopus laevis GN=ddx55 PE=2
SV=1
Length = 594
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/446 (27%), Positives = 196/446 (43%), Gaps = 95/446 (21%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+ + + PVQ A TI + +D+ + TGSGKTL++ +P+++ L R + +
Sbjct: 27 LKFTHMTPVQSA----TIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKLKKNQ 82
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
AL++ PTR+LA+Q+ +V + S L +G S+ D
Sbjct: 83 VGALIITPTRELAVQIDEVLSCFTKHFPQFSQILLIGGSNPVD----------------- 125
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHI-NATRGFTL----EHLCYLVVDETDRLLREAYQ 170
DV + + +I+VATPGRL D G L + L L++DE DRLL ++
Sbjct: 126 ---DVRKFKEHGGNIIVATPGRLEDMFRRQADGLDLVICVKTLDVLILDEADRLLDMGFE 182
Query: 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
A + T+L FLP RR G + SAT
Sbjct: 183 ASINTIL---------------GFLPKQ-------RRTG----------------LFSAT 204
Query: 231 LTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLVALLQS 284
TQ+ L + L +P+ + E + K P RL++Y +IC++ K L+A LQ
Sbjct: 205 QTQELENLVRAGLRNPVRIAVKEKGVAATSTQKTPIRLQNYYMICKADEKFNKLIAFLQK 264
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELR------IKIKEYSGLQRQSVRSKTLKAFRE 338
+EK +VF S+ C + ++G+ +K+ G + R++ FR+
Sbjct: 265 RKQEKHLVFFST-------CACVEYYGKALEMLLKPVKVMCIHGKMKHK-RNRIFTEFRK 316
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
+LV +D M RG+D+ VN VV YD P+ ++HR GRTAR G G L E
Sbjct: 317 INSGILVCTDVMARGIDIHEVNWVVQYDPPSSASAFVHRCGRTARIGHHGSALVFLLPME 376
Query: 399 VKRFKKLLQKADNDSCPIHSIPSSLI 424
L + N CP+ + +I
Sbjct: 377 ESYVSFL---SINQKCPLQEMTELII 399
>sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP8 PE=3 SV=2
Length = 433
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 179/398 (44%), Gaps = 65/398 (16%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
++ E I L RD + TGSGKT+++A P++ S + LV+ PTR+LALQ
Sbjct: 26 SIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPF-GIYGLVLTPTRELALQ 84
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 131
+ + F A+ ++ + V + VG + + E+ K P +
Sbjct: 85 IAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHF---------------------I 123
Query: 132 VATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
+ATPGRL DHI + T L+ + +LV+DE DRLL ++ + L ++
Sbjct: 124 IATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKI--------L 175
Query: 189 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 248
DAS F + T R KDKP P K P+F
Sbjct: 176 PDASKRQTLLFTATVT----DAVRALKDKPVPEGKK---------------------PVF 210
Query: 249 L--TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC--IVFTSSVESTHRLC 304
+ + + +P L + S +K YL +L S EK IVF V T+
Sbjct: 211 IHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVSPKYEKASAIVF---VNRTYTAE 267
Query: 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364
L +L I++ QS R+ +L FR G +VL+++D +RG+D+ V VVN
Sbjct: 268 ILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVELVVN 327
Query: 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
D PA YIHR GRTARAG+ G +++ + +V+R
Sbjct: 328 QDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERI 365
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana
GN=RH21 PE=2 SV=1
Length = 733
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 116/407 (28%), Positives = 184/407 (45%), Gaps = 60/407 (14%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-------NRAV 54
G P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 332 GYKKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENET 387
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
A+V+ PTR+LA Q+++ A +G V VG SI E G+
Sbjct: 388 EGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE------------EQGL- 434
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
++ +I++ATPGRL+D + R L Y+V+DE DR++ ++ +
Sbjct: 435 --------KITQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGFEPQVA 485
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234
VL S N K I R + SAT+
Sbjct: 486 GVLDAMPSSN------LKPENEEEELDEKKIYRT---------------TYMFSATMPPG 524
Query: 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+LA+ L +P+ +T G T K + + + ++ + K L LL LGE+ IVF
Sbjct: 525 VERLARKYLRNPVVVTIG-TAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFV 583
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D + RG+
Sbjct: 584 NTKKNCDSIAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGI 640
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEV 399
D+ V +V+NYD P +I+ Y HR GRT RAG+ G F LH EV
Sbjct: 641 DIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV 687
>sp|Q2UHB7|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dbp4 PE=3 SV=1
Length = 796
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 182/421 (43%), Gaps = 70/421 (16%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRAL 60
SS F + IG L RD+ + TGSGKTL++ +P+++ L + L AL
Sbjct: 62 SSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGAL 121
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 122 ILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKEE--------------------- 160
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
QE ++ILV TPGR++ H++ T F + +L LV+DE DR+L +Q + ++
Sbjct: 161 -QERLGRMNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIV--- 216
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
G L R+ ++ SAT T+ + LA+
Sbjct: 217 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 241
Query: 241 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L L P ++ ET P L+ + ++ K L + ++S + K IVF SS +
Sbjct: 242 LSLQDPEYVAVHETASSATPSTLQQHYVVTPLSQKLDVLWSFIRSNLKAKTIVFLSSGKQ 301
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
+ H + I + G Q+Q R F + K VL S+D RG+D V
Sbjct: 302 VRFVYESFRHL-QPGIPLMHLHGRQKQGGRLDITAKFSQAKHAVLFSTDITARGLDFPAV 360
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHS 418
+ V+ D P TYIHR GRTAR + GR L +E K+L QK PI
Sbjct: 361 DWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEESGMLKRLEQK----KVPIER 416
Query: 419 I 419
I
Sbjct: 417 I 417
>sp|Q75BS4|DHH1_ASHGO ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DHH1
PE=3 SV=1
Length = 484
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 192/428 (44%), Gaps = 70/428 (16%)
Query: 1 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI + F + +E I L RD+ + G+GKT ++ +P ++ + + V ++A
Sbjct: 42 MGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLEIVKPK-VNKIQA 100
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + G+S + G +++ D+I
Sbjct: 101 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI------------------- 141
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L V +LV TPGR++D + + + L V+DE D++L +++ + +L
Sbjct: 142 --MRLNEPVHVLVGTPGRVLD-LASRKVADLSECSLFVMDEADKMLSRDFKSLVEQIL-- 196
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239
+FLP SL +P VK + L NK
Sbjct: 197 -------------SFLPQNHQSL-----------LFSATFPLTVKEFMVKHL----NKPY 228
Query: 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 229 EINLMDELTLKGITQYYAFVE--ERQKLHC--------LNTLFSKLQINQAIIFCNS--- 275
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T+R+ L +L +Q R+K FR+GK++ LV SD +TRG+D++ V
Sbjct: 276 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 335
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
N V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +I
Sbjct: 336 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAI 392
Query: 420 PSSLIESL 427
P+ + +SL
Sbjct: 393 PAQIDKSL 400
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,812,615
Number of Sequences: 539616
Number of extensions: 6289882
Number of successful extensions: 22769
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 192
Number of HSP's that attempted gapping in prelim test: 17418
Number of HSP's gapped (non-prelim): 2770
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)