Query 013778
Match_columns 436
No_of_seqs 132 out of 1468
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 16:56:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.8E-51 1.3E-55 387.6 36.2 346 1-413 74-424 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.3E-49 4.3E-54 376.5 33.7 344 1-412 55-398 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 2E-49 6.7E-54 376.3 34.5 356 1-423 33-406 (417)
4 1s2m_A Putative ATP-dependent 100.0 6E-49 2E-53 370.8 35.4 342 1-412 39-380 (400)
5 3eiq_A Eukaryotic initiation f 100.0 2E-49 6.9E-54 375.9 32.2 346 1-413 58-403 (414)
6 1xti_A Probable ATP-dependent 100.0 5.1E-48 1.7E-52 363.4 37.3 343 1-410 26-371 (391)
7 3fht_A ATP-dependent RNA helic 100.0 5.4E-48 1.9E-52 365.9 32.0 344 1-412 43-395 (412)
8 3pey_A ATP-dependent RNA helic 100.0 8.1E-48 2.8E-52 362.7 32.7 340 1-410 23-370 (395)
9 1hv8_A Putative ATP-dependent 100.0 4.8E-47 1.7E-51 353.8 32.8 336 1-411 24-359 (367)
10 3sqw_A ATP-dependent RNA helic 100.0 7E-47 2.4E-51 371.6 34.7 357 1-410 39-411 (579)
11 1fuu_A Yeast initiation factor 100.0 2.8E-49 9.7E-54 372.4 16.6 353 1-425 39-391 (394)
12 3i5x_A ATP-dependent RNA helic 100.0 1.5E-46 5E-51 369.4 34.8 357 1-410 90-462 (563)
13 2z0m_A 337AA long hypothetical 100.0 5.6E-46 1.9E-50 342.4 29.6 323 1-409 12-334 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 7.4E-48 2.5E-52 371.0 14.7 341 1-409 110-459 (479)
15 3fho_A ATP-dependent RNA helic 100.0 1.2E-46 4.2E-51 363.3 20.2 341 1-411 137-485 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 3E-45 1E-49 356.5 27.3 324 1-406 40-383 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.3E-44 4.6E-49 348.7 29.8 330 1-408 21-354 (523)
18 3oiy_A Reverse gyrase helicase 100.0 1.5E-43 5.2E-48 334.9 26.8 331 2-409 19-375 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 9.4E-42 3.2E-46 335.6 26.2 338 1-399 3-510 (556)
20 2ykg_A Probable ATP-dependent 100.0 2.2E-41 7.5E-46 341.0 23.3 341 1-401 9-520 (696)
21 3tbk_A RIG-I helicase domain; 100.0 6E-41 2.1E-45 329.9 25.8 337 5-401 4-511 (555)
22 1wp9_A ATP-dependent RNA helic 100.0 3.9E-40 1.3E-44 319.3 30.9 323 5-400 9-478 (494)
23 4a2q_A RIG-I, retinoic acid in 100.0 8.8E-41 3E-45 339.4 26.2 338 1-399 244-751 (797)
24 2va8_A SSO2462, SKI2-type heli 100.0 6.9E-40 2.4E-44 330.0 31.1 322 1-398 26-409 (715)
25 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-40 7.6E-45 332.4 26.3 325 1-399 21-390 (702)
26 2zj8_A DNA helicase, putative 100.0 5E-40 1.7E-44 330.8 28.4 324 1-399 19-389 (720)
27 3l9o_A ATP-dependent RNA helic 100.0 7.4E-40 2.5E-44 338.0 29.1 325 4-407 183-608 (1108)
28 2xgj_A ATP-dependent RNA helic 100.0 5.6E-40 1.9E-44 336.1 26.6 323 1-406 83-509 (1010)
29 1gku_B Reverse gyrase, TOP-RG; 100.0 4.3E-40 1.5E-44 340.0 24.2 342 1-420 54-477 (1054)
30 4f92_B U5 small nuclear ribonu 100.0 6.2E-39 2.1E-43 342.1 29.8 366 2-434 923-1342(1724)
31 4a2w_A RIG-I, retinoic acid in 100.0 1.5E-39 5.1E-44 333.5 24.1 337 2-399 245-751 (936)
32 4f92_B U5 small nuclear ribonu 100.0 7.4E-40 2.5E-44 349.1 22.6 366 2-434 76-507 (1724)
33 1gm5_A RECG; helicase, replica 100.0 1.4E-39 4.8E-44 323.0 22.5 318 1-396 365-696 (780)
34 4ddu_A Reverse gyrase; topoiso 100.0 6.2E-39 2.1E-43 331.0 26.3 294 1-369 75-388 (1104)
35 2eyq_A TRCF, transcription-rep 100.0 3.2E-38 1.1E-42 327.9 28.7 318 1-397 600-922 (1151)
36 4a4z_A Antiviral helicase SKI2 100.0 1.4E-38 4.9E-43 325.7 25.1 329 1-408 36-505 (997)
37 4gl2_A Interferon-induced heli 100.0 4.1E-39 1.4E-43 324.7 20.8 329 5-385 7-509 (699)
38 2oca_A DAR protein, ATP-depend 100.0 7.4E-39 2.5E-43 310.8 18.1 310 5-395 113-453 (510)
39 2fwr_A DNA repair protein RAD2 100.0 7.1E-38 2.4E-42 301.0 19.7 289 5-393 93-448 (472)
40 1tf5_A Preprotein translocase 100.0 4E-36 1.4E-40 292.5 26.6 368 1-410 80-565 (844)
41 1yks_A Genome polyprotein [con 100.0 7.1E-37 2.4E-41 288.9 13.5 280 20-408 4-313 (440)
42 2jlq_A Serine protease subunit 100.0 8.2E-36 2.8E-40 283.0 20.0 288 2-396 1-310 (451)
43 2whx_A Serine protease/ntpase/ 100.0 1.1E-35 3.8E-40 290.1 20.0 299 4-408 170-492 (618)
44 3h1t_A Type I site-specific re 100.0 9.4E-36 3.2E-40 293.6 18.1 318 5-396 178-558 (590)
45 3dmq_A RNA polymerase-associat 100.0 6.4E-35 2.2E-39 299.5 24.4 364 4-397 152-613 (968)
46 1nkt_A Preprotein translocase 100.0 1.3E-33 4.4E-38 274.4 31.9 368 1-410 108-637 (922)
47 2fsf_A Preprotein translocase 100.0 5.1E-35 1.7E-39 283.9 22.0 355 2-398 72-584 (853)
48 2wv9_A Flavivirin protease NS2 100.0 2.5E-35 8.6E-40 289.2 18.2 294 5-400 215-539 (673)
49 2z83_A Helicase/nucleoside tri 100.0 1.8E-34 6.1E-39 274.2 21.2 270 21-397 18-313 (459)
50 3o8b_A HCV NS3 protease/helica 100.0 1.5E-34 5.3E-39 279.2 18.7 272 16-399 224-516 (666)
51 2v6i_A RNA helicase; membrane, 100.0 6.1E-34 2.1E-38 268.4 21.6 269 24-394 2-288 (431)
52 2xau_A PRE-mRNA-splicing facto 100.0 2.4E-34 8.4E-39 287.6 19.5 317 4-399 92-445 (773)
53 1z63_A Helicase of the SNF2/RA 100.0 2.1E-33 7.3E-38 271.8 22.9 311 5-394 37-448 (500)
54 3rc3_A ATP-dependent RNA helic 100.0 4.5E-32 1.5E-36 265.3 22.9 283 23-408 154-455 (677)
55 3mwy_W Chromo domain-containin 100.0 3.1E-31 1.1E-35 268.5 25.6 346 4-409 235-698 (800)
56 1z3i_X Similar to RAD54-like; 100.0 4.8E-30 1.6E-34 253.5 30.9 364 5-393 55-522 (644)
57 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.7E-30 5.8E-35 264.6 23.5 335 5-412 271-722 (1038)
58 3jux_A Protein translocase sub 100.0 5.5E-28 1.9E-32 230.1 28.6 386 5-410 75-607 (822)
59 3fe2_A Probable ATP-dependent 100.0 1.1E-27 3.8E-32 208.7 17.9 189 1-253 47-239 (242)
60 3ber_A Probable ATP-dependent 100.0 3.1E-27 1.1E-31 206.2 19.4 186 1-250 61-246 (249)
61 1wrb_A DJVLGB; RNA helicase, D 100.0 4.6E-27 1.6E-31 206.4 19.6 193 1-253 41-241 (253)
62 3ly5_A ATP-dependent RNA helic 99.9 3.5E-27 1.2E-31 207.6 17.6 184 1-247 72-258 (262)
63 3dkp_A Probable ATP-dependent 99.9 1.7E-27 5.8E-32 208.2 15.4 192 1-253 47-242 (245)
64 2pl3_A Probable ATP-dependent 99.9 8.4E-27 2.9E-31 202.6 19.2 186 1-250 43-231 (236)
65 1vec_A ATP-dependent RNA helic 99.9 7.1E-27 2.4E-31 198.8 17.8 184 1-249 21-205 (206)
66 1q0u_A Bstdead; DEAD protein, 99.9 4.6E-27 1.6E-31 201.7 16.3 188 1-253 22-213 (219)
67 2oxc_A Probable ATP-dependent 99.9 9.4E-27 3.2E-31 201.2 17.8 184 1-250 42-227 (230)
68 3iuy_A Probable ATP-dependent 99.9 9.4E-27 3.2E-31 201.2 16.9 184 1-249 38-226 (228)
69 1t6n_A Probable ATP-dependent 99.9 3.2E-26 1.1E-30 196.8 20.1 185 1-249 32-218 (220)
70 3bor_A Human initiation factor 99.9 6.6E-27 2.3E-31 203.0 15.7 186 1-250 48-233 (237)
71 1qde_A EIF4A, translation init 99.9 1E-26 3.5E-31 200.5 16.3 185 1-251 32-216 (224)
72 3fmo_B ATP-dependent RNA helic 99.9 1.1E-26 3.8E-31 208.0 16.7 186 1-251 110-297 (300)
73 1c4o_A DNA nucleotide excision 99.9 3.2E-25 1.1E-29 218.7 28.5 110 286-399 438-552 (664)
74 2gxq_A Heat resistant RNA depe 99.9 7.6E-26 2.6E-30 192.6 17.6 184 1-250 19-204 (207)
75 2d7d_A Uvrabc system protein B 99.9 3.1E-24 1.1E-28 211.6 31.0 110 286-399 444-558 (661)
76 2hjv_A ATP-dependent RNA helic 99.9 3.1E-25 1.1E-29 180.4 18.1 148 261-411 9-156 (163)
77 2ipc_A Preprotein translocase 99.9 3.7E-24 1.3E-28 207.8 26.6 132 1-166 76-216 (997)
78 1fuk_A Eukaryotic initiation f 99.9 3.2E-25 1.1E-29 180.8 14.5 145 265-412 7-152 (165)
79 1t5i_A C_terminal domain of A 99.9 1.5E-24 5.1E-29 177.7 17.3 147 261-410 5-152 (172)
80 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.7E-25 2.3E-29 181.8 15.3 159 260-424 18-177 (185)
81 2rb4_A ATP-dependent RNA helic 99.9 9.6E-25 3.3E-29 179.8 16.0 149 261-412 7-162 (175)
82 3eaq_A Heat resistant RNA depe 99.9 4.3E-24 1.5E-28 181.2 19.7 147 263-412 7-153 (212)
83 2p6n_A ATP-dependent RNA helic 99.9 2.6E-24 8.7E-29 179.0 15.6 150 260-413 28-178 (191)
84 2vl7_A XPD; helicase, unknown 99.9 1.7E-24 5.9E-29 209.4 16.0 152 1-165 4-188 (540)
85 3i32_A Heat resistant RNA depe 99.9 4.8E-23 1.6E-27 182.7 18.3 147 263-412 4-150 (300)
86 2yjt_D ATP-dependent RNA helic 99.8 7E-25 2.4E-29 179.6 0.0 136 272-410 15-150 (170)
87 3crv_A XPD/RAD3 related DNA he 99.9 1.2E-21 4E-26 190.5 22.1 156 2-166 1-187 (551)
88 4a15_A XPD helicase, ATP-depen 99.9 5.4E-21 1.9E-25 187.0 19.5 88 5-95 3-90 (620)
89 3b6e_A Interferon-induced heli 99.9 3E-21 1E-25 165.3 13.3 142 4-171 32-181 (216)
90 1rif_A DAR protein, DNA helica 99.8 3.8E-20 1.3E-24 164.8 10.4 128 5-167 113-240 (282)
91 3llm_A ATP-dependent RNA helic 99.7 1E-17 3.6E-22 144.7 13.2 141 5-179 61-205 (235)
92 2fz4_A DNA repair protein RAD2 99.7 4.8E-18 1.7E-22 146.4 10.0 116 5-169 93-209 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 1.8E-17 6E-22 145.3 11.5 120 271-393 94-218 (271)
94 4b3f_X DNA-binding protein smu 98.5 4.5E-07 1.6E-11 89.8 11.2 69 4-79 188-256 (646)
95 1w36_D RECD, exodeoxyribonucle 98.5 4.3E-07 1.5E-11 88.9 9.6 73 7-84 151-224 (608)
96 2gk6_A Regulator of nonsense t 98.3 8.1E-06 2.8E-10 80.3 13.4 70 3-79 178-247 (624)
97 3upu_A ATP-dependent DNA helic 98.3 1.1E-06 3.8E-11 83.2 6.7 72 1-75 21-93 (459)
98 2xzl_A ATP-dependent helicase 98.2 2.1E-05 7.1E-10 79.2 14.6 70 3-79 358-427 (802)
99 2wjy_A Regulator of nonsense t 98.1 2.3E-05 7.8E-10 78.8 13.4 69 4-79 355-423 (800)
100 3e1s_A Exodeoxyribonuclease V, 98.0 1.7E-05 5.9E-10 76.8 8.5 62 5-74 189-250 (574)
101 3hgt_A HDA1 complex subunit 3; 97.6 0.0012 4E-08 58.0 13.4 128 271-406 107-246 (328)
102 3lfu_A DNA helicase II; SF1 he 97.6 0.00012 4.2E-09 72.6 7.6 72 4-81 8-79 (647)
103 1pjr_A PCRA; DNA repair, DNA r 97.4 0.0004 1.4E-08 69.6 8.8 82 4-91 10-93 (724)
104 1uaa_A REP helicase, protein ( 97.4 0.0004 1.4E-08 69.1 8.3 82 5-92 2-86 (673)
105 3vkw_A Replicase large subunit 97.1 0.00064 2.2E-08 62.7 6.1 44 25-77 162-205 (446)
106 1xx6_A Thymidine kinase; NESG, 96.9 0.0027 9.2E-08 51.8 7.6 40 24-67 8-47 (191)
107 3e2i_A Thymidine kinase; Zn-bi 96.9 0.0026 9E-08 52.3 7.1 40 24-67 28-67 (219)
108 2o0j_A Terminase, DNA packagin 96.8 0.02 7E-07 52.0 13.6 72 5-82 163-234 (385)
109 2j9r_A Thymidine kinase; TK1, 96.7 0.0034 1.2E-07 51.7 6.8 39 25-67 29-67 (214)
110 2orw_A Thymidine kinase; TMTK, 96.7 0.0035 1.2E-07 50.9 6.8 40 24-67 3-42 (184)
111 2b8t_A Thymidine kinase; deoxy 96.6 0.0024 8.3E-08 53.4 5.4 40 24-67 12-51 (223)
112 1a5t_A Delta prime, HOLB; zinc 96.6 0.0048 1.7E-07 55.5 7.4 41 6-46 3-46 (334)
113 1w4r_A Thymidine kinase; type 96.4 0.0076 2.6E-07 48.8 6.8 39 24-66 20-58 (195)
114 3cpe_A Terminase, DNA packagin 96.3 0.004 1.4E-07 60.8 5.6 73 5-83 163-235 (592)
115 3u4q_A ATP-dependent helicase/ 96.3 0.0067 2.3E-07 64.5 7.4 70 5-80 10-81 (1232)
116 2orv_A Thymidine kinase; TP4A 96.0 0.0082 2.8E-07 49.9 5.2 40 24-67 19-58 (234)
117 3te6_A Regulatory protein SIR3 96.0 0.0078 2.7E-07 53.2 5.3 27 23-50 44-70 (318)
118 2gno_A DNA polymerase III, gam 95.4 0.027 9.2E-07 49.7 6.5 19 25-43 19-37 (305)
119 2v1u_A Cell division control p 95.3 0.05 1.7E-06 49.8 8.4 21 23-43 43-63 (387)
120 2chg_A Replication factor C sm 95.3 0.18 6.1E-06 41.7 11.1 18 25-42 39-56 (226)
121 1l8q_A Chromosomal replication 95.1 0.16 5.6E-06 45.1 11.0 37 24-64 37-73 (324)
122 1gm5_A RECG; helicase, replica 95.1 0.05 1.7E-06 54.6 8.1 82 287-368 417-500 (780)
123 2z4s_A Chromosomal replication 95.0 0.12 4.1E-06 48.2 10.0 40 24-65 130-169 (440)
124 1sxj_D Activator 1 41 kDa subu 94.9 0.041 1.4E-06 49.7 6.4 32 12-43 44-77 (353)
125 2bjv_A PSP operon transcriptio 94.9 0.073 2.5E-06 45.9 7.7 19 23-41 28-46 (265)
126 2zpa_A Uncharacterized protein 94.8 0.061 2.1E-06 52.3 7.4 59 5-72 175-233 (671)
127 3ec2_A DNA replication protein 94.6 0.027 9.4E-07 45.3 4.0 36 8-43 17-57 (180)
128 3u61_B DNA polymerase accessor 94.6 0.12 4.1E-06 46.0 8.6 14 152-165 105-118 (324)
129 3hjh_A Transcription-repair-co 94.5 0.38 1.3E-05 45.3 11.9 75 276-366 372-446 (483)
130 2qby_B CDC6 homolog 3, cell di 94.3 0.21 7.2E-06 45.5 9.7 20 24-43 45-64 (384)
131 2r6a_A DNAB helicase, replicat 94.2 0.32 1.1E-05 45.6 10.9 51 13-66 192-242 (454)
132 1iqp_A RFCS; clamp loader, ext 94.0 0.085 2.9E-06 46.9 6.4 19 25-43 47-65 (327)
133 3oiy_A Reverse gyrase helicase 94.0 0.16 5.5E-06 47.0 8.5 82 286-367 63-148 (414)
134 2q6t_A DNAB replication FORK h 93.9 0.56 1.9E-05 43.8 11.9 50 13-65 189-238 (444)
135 2qby_A CDC6 homolog 1, cell di 93.8 0.24 8.1E-06 45.1 9.2 20 24-43 45-64 (386)
136 2w58_A DNAI, primosome compone 93.7 0.041 1.4E-06 45.2 3.4 19 25-43 55-73 (202)
137 3pvs_A Replication-associated 93.5 0.13 4.3E-06 48.1 6.7 18 25-42 51-68 (447)
138 4a1f_A DNAB helicase, replicat 93.3 0.13 4.5E-06 45.9 6.1 59 13-76 35-93 (338)
139 3io5_A Recombination and repai 93.2 0.066 2.3E-06 46.9 3.9 46 21-69 26-71 (333)
140 3n70_A Transport activator; si 93.0 0.055 1.9E-06 41.7 2.9 19 23-41 23-41 (145)
141 3ber_A Probable ATP-dependent 92.9 0.89 3.1E-05 38.5 10.6 119 286-411 110-240 (249)
142 1jr3_A DNA polymerase III subu 92.7 0.17 5.9E-06 45.9 6.3 17 26-42 40-56 (373)
143 1sxj_B Activator 1 37 kDa subu 92.6 0.48 1.6E-05 41.9 9.0 19 25-43 43-61 (323)
144 2hjv_A ATP-dependent RNA helic 92.6 2.3 7.9E-05 33.1 12.0 78 55-160 34-111 (163)
145 3hr8_A Protein RECA; alpha and 92.6 0.084 2.9E-06 47.5 3.8 52 13-68 48-101 (356)
146 2eyq_A TRCF, transcription-rep 92.2 0.44 1.5E-05 50.3 9.2 80 286-365 651-732 (1151)
147 4ddu_A Reverse gyrase; topoiso 92.1 0.24 8.4E-06 51.8 7.0 82 286-367 120-205 (1104)
148 2qgz_A Helicase loader, putati 91.9 0.089 3E-06 46.5 3.1 37 24-63 152-188 (308)
149 1t6n_A Probable ATP-dependent 91.8 0.6 2.1E-05 38.6 8.1 120 287-409 82-211 (220)
150 3cmu_A Protein RECA, recombina 91.7 0.25 8.6E-06 54.3 6.7 44 21-68 1424-1467(2050)
151 3co5_A Putative two-component 91.5 0.059 2E-06 41.5 1.3 18 23-40 26-43 (143)
152 2zts_A Putative uncharacterize 90.9 0.22 7.5E-06 42.2 4.5 60 15-78 20-80 (251)
153 2kjq_A DNAA-related protein; s 90.8 0.43 1.5E-05 36.8 5.7 23 18-41 31-53 (149)
154 3eaq_A Heat resistant RNA depe 90.8 3.8 0.00013 33.6 11.9 75 55-158 30-105 (212)
155 1fuk_A Eukaryotic initiation f 90.7 3.7 0.00013 32.0 11.3 77 55-159 29-105 (165)
156 2w0m_A SSO2452; RECA, SSPF, un 90.6 0.37 1.3E-05 40.3 5.6 49 12-64 10-59 (235)
157 3iuy_A Probable ATP-dependent 90.4 0.71 2.4E-05 38.4 7.2 116 286-409 93-219 (228)
158 2gxq_A Heat resistant RNA depe 90.4 1.6 5.5E-05 35.5 9.3 120 286-410 71-197 (207)
159 2oxc_A Probable ATP-dependent 90.4 0.53 1.8E-05 39.4 6.3 76 286-366 91-174 (230)
160 1tue_A Replication protein E1; 90.2 0.2 6.8E-06 40.9 3.3 28 14-41 48-75 (212)
161 1t5i_A C_terminal domain of A 90.2 4 0.00014 32.1 11.1 78 55-160 30-107 (172)
162 3kl4_A SRP54, signal recogniti 90.2 1 3.5E-05 41.6 8.5 34 26-63 99-132 (433)
163 2cvh_A DNA repair and recombin 90.1 0.34 1.2E-05 40.1 4.9 46 13-65 8-54 (220)
164 2r44_A Uncharacterized protein 90.0 0.087 3E-06 47.1 1.2 33 9-41 31-63 (331)
165 3dm5_A SRP54, signal recogniti 89.9 0.76 2.6E-05 42.5 7.3 56 26-88 102-159 (443)
166 2rb4_A ATP-dependent RNA helic 89.7 3.6 0.00012 32.4 10.5 76 55-158 33-108 (175)
167 3syl_A Protein CBBX; photosynt 89.7 0.4 1.4E-05 42.2 5.3 20 24-43 67-86 (309)
168 1jbk_A CLPB protein; beta barr 89.7 0.39 1.3E-05 38.5 4.8 19 24-42 43-61 (195)
169 3bh0_A DNAB-like replicative h 89.7 0.44 1.5E-05 42.2 5.5 60 13-77 57-116 (315)
170 1vec_A ATP-dependent RNA helic 89.4 1.7 5.9E-05 35.3 8.7 120 287-410 71-199 (206)
171 2p65_A Hypothetical protein PF 89.4 0.33 1.1E-05 38.8 4.2 20 24-43 43-62 (187)
172 2p6n_A ATP-dependent RNA helic 89.3 4.8 0.00016 32.3 11.1 76 56-159 54-129 (191)
173 2dr3_A UPF0273 protein PH0284; 89.3 0.35 1.2E-05 40.8 4.5 59 14-77 12-71 (247)
174 3ice_A Transcription terminati 88.7 0.92 3.1E-05 41.0 6.7 27 17-43 167-193 (422)
175 3fe2_A Probable ATP-dependent 88.5 1 3.5E-05 37.9 6.9 119 286-411 101-230 (242)
176 3hws_A ATP-dependent CLP prote 88.4 0.22 7.5E-06 45.2 2.7 20 23-42 50-69 (363)
177 3bor_A Human initiation factor 88.4 1.1 3.6E-05 37.7 6.8 119 286-411 97-227 (237)
178 3nbx_X ATPase RAVA; AAA+ ATPas 88.0 0.11 3.7E-06 49.2 0.4 32 10-41 27-58 (500)
179 2jgn_A DBX, DDX3, ATP-dependen 87.8 3.3 0.00011 33.1 9.1 76 55-158 45-120 (185)
180 1p9r_A General secretion pathw 87.6 0.78 2.7E-05 42.2 5.8 32 7-40 152-183 (418)
181 3bgw_A DNAB-like replicative h 87.4 0.7 2.4E-05 43.1 5.4 49 13-65 186-234 (444)
182 3bos_A Putative DNA replicatio 87.0 0.68 2.3E-05 38.7 4.8 20 23-42 51-70 (242)
183 2zr9_A Protein RECA, recombina 86.8 0.7 2.4E-05 41.5 4.9 50 13-66 48-99 (349)
184 2chq_A Replication factor C sm 86.7 0.71 2.4E-05 40.6 5.0 33 10-42 22-56 (319)
185 1cr0_A DNA primase/helicase; R 86.6 0.91 3.1E-05 39.6 5.5 49 13-64 24-72 (296)
186 1ofh_A ATP-dependent HSL prote 86.6 0.23 8E-06 43.6 1.7 19 24-42 50-68 (310)
187 1e9r_A Conjugal transfer prote 86.6 0.55 1.9E-05 43.7 4.3 43 24-70 53-95 (437)
188 2pl3_A Probable ATP-dependent 86.5 2.4 8.3E-05 35.3 8.0 120 286-410 96-224 (236)
189 3i5x_A ATP-dependent RNA helic 86.3 11 0.00037 36.2 13.5 81 55-160 338-418 (563)
190 2c9o_A RUVB-like 1; hexameric 86.2 0.75 2.6E-05 43.1 5.0 20 23-42 62-81 (456)
191 4ag6_A VIRB4 ATPase, type IV s 86.1 0.8 2.7E-05 41.9 5.1 41 23-67 34-74 (392)
192 1u94_A RECA protein, recombina 85.9 0.95 3.3E-05 40.7 5.3 50 14-67 51-102 (356)
193 4b4t_J 26S protease regulatory 85.6 0.56 1.9E-05 42.7 3.6 18 24-41 182-199 (405)
194 4b4t_M 26S protease regulatory 85.5 0.52 1.8E-05 43.5 3.4 18 24-41 215-232 (434)
195 1u0j_A DNA replication protein 85.5 0.88 3E-05 38.8 4.6 18 25-42 105-122 (267)
196 3fmo_B ATP-dependent RNA helic 85.4 1.6 5.4E-05 38.2 6.4 115 287-411 162-290 (300)
197 1ojl_A Transcriptional regulat 85.4 0.45 1.5E-05 41.8 2.9 19 23-41 24-42 (304)
198 1wrb_A DJVLGB; RNA helicase, D 85.3 8.5 0.00029 32.3 10.9 121 287-411 100-232 (253)
199 1xp8_A RECA protein, recombina 85.2 0.93 3.2E-05 40.9 4.9 51 13-67 61-113 (366)
200 1w36_B RECB, exodeoxyribonucle 85.1 1.5 5.1E-05 46.6 7.1 57 25-81 17-81 (1180)
201 2eyu_A Twitching motility prot 85.0 0.58 2E-05 40.0 3.3 26 13-40 16-41 (261)
202 3sqw_A ATP-dependent RNA helic 84.9 14 0.00048 35.6 13.5 82 55-161 287-368 (579)
203 4fcw_A Chaperone protein CLPB; 84.7 0.17 5.9E-06 44.6 -0.1 18 25-42 48-65 (311)
204 3a8t_A Adenylate isopentenyltr 84.7 0.5 1.7E-05 41.9 2.8 19 25-43 41-59 (339)
205 3vaa_A Shikimate kinase, SK; s 84.6 0.6 2.1E-05 38.0 3.1 21 23-43 24-44 (199)
206 2qz4_A Paraplegin; AAA+, SPG7, 84.5 0.79 2.7E-05 39.0 4.0 19 24-42 39-57 (262)
207 2r8r_A Sensor protein; KDPD, P 84.4 1.1 3.7E-05 37.2 4.5 25 26-50 8-32 (228)
208 3cf0_A Transitional endoplasmi 84.2 0.73 2.5E-05 40.4 3.7 19 23-41 48-66 (301)
209 2qmh_A HPR kinase/phosphorylas 84.2 0.54 1.8E-05 38.1 2.5 18 24-41 34-51 (205)
210 2v1x_A ATP-dependent DNA helic 84.1 2 6.8E-05 41.7 7.0 59 287-348 84-144 (591)
211 4b4t_L 26S protease subunit RP 84.1 0.65 2.2E-05 42.9 3.4 18 24-41 215-232 (437)
212 3uk6_A RUVB-like 2; hexameric 84.1 0.98 3.4E-05 40.8 4.6 20 24-43 70-89 (368)
213 1sxj_C Activator 1 40 kDa subu 84.1 0.4 1.4E-05 42.9 2.0 34 10-43 30-65 (340)
214 1oyw_A RECQ helicase, ATP-depe 84.1 2 6.8E-05 41.0 6.9 59 287-348 65-123 (523)
215 1g5t_A COB(I)alamin adenosyltr 84.0 1.3 4.4E-05 35.8 4.7 36 24-63 28-63 (196)
216 3h4m_A Proteasome-activating n 84.0 0.81 2.8E-05 39.6 3.9 19 23-41 50-68 (285)
217 4b4t_K 26S protease regulatory 83.9 0.86 2.9E-05 42.0 4.1 18 24-41 206-223 (428)
218 3i32_A Heat resistant RNA depe 83.9 10 0.00035 33.0 10.8 76 55-158 27-102 (300)
219 1njg_A DNA polymerase III subu 83.7 0.87 3E-05 38.0 3.9 17 26-42 47-63 (250)
220 3ly5_A ATP-dependent RNA helic 83.7 3.8 0.00013 34.9 7.9 116 286-409 125-253 (262)
221 1q57_A DNA primase/helicase; d 83.5 1.2 4.3E-05 42.2 5.2 59 14-76 232-290 (503)
222 2oap_1 GSPE-2, type II secreti 83.5 0.69 2.4E-05 43.9 3.4 18 23-40 259-276 (511)
223 2l8b_A Protein TRAI, DNA helic 83.2 2.3 7.8E-05 33.8 5.6 59 8-71 37-95 (189)
224 1d2n_A N-ethylmaleimide-sensit 83.0 0.71 2.4E-05 39.7 3.1 19 25-43 65-83 (272)
225 2r2a_A Uncharacterized protein 82.9 0.77 2.6E-05 37.4 3.0 18 26-43 7-24 (199)
226 4b4t_I 26S protease regulatory 82.9 0.83 2.8E-05 41.9 3.5 18 24-41 216-233 (437)
227 3foz_A TRNA delta(2)-isopenten 82.8 0.78 2.7E-05 40.1 3.2 18 26-43 12-29 (316)
228 1kgd_A CASK, peripheral plasma 82.8 0.86 2.9E-05 36.4 3.3 19 23-41 4-22 (180)
229 3exa_A TRNA delta(2)-isopenten 82.6 0.7 2.4E-05 40.4 2.8 19 25-43 4-22 (322)
230 3trf_A Shikimate kinase, SK; a 82.6 0.91 3.1E-05 36.3 3.4 20 24-43 5-24 (185)
231 2qor_A Guanylate kinase; phosp 82.5 0.99 3.4E-05 36.8 3.6 22 20-41 8-29 (204)
232 1xti_A Probable ATP-dependent 82.4 5.4 0.00018 36.0 9.0 108 287-397 76-193 (391)
233 3t15_A Ribulose bisphosphate c 82.4 0.74 2.5E-05 40.2 3.0 18 25-42 37-54 (293)
234 2r62_A Cell division protease 82.4 0.77 2.6E-05 39.3 3.0 19 24-42 44-62 (268)
235 3iij_A Coilin-interacting nucl 82.3 1.2 4E-05 35.4 3.9 20 23-42 10-29 (180)
236 3b9p_A CG5977-PA, isoform A; A 82.1 0.79 2.7E-05 40.0 3.1 18 24-41 54-71 (297)
237 1xwi_A SKD1 protein; VPS4B, AA 82.0 0.82 2.8E-05 40.5 3.1 17 25-41 46-62 (322)
238 3vfd_A Spastin; ATPase, microt 82.0 0.89 3.1E-05 41.5 3.5 19 24-42 148-166 (389)
239 2i4i_A ATP-dependent RNA helic 82.0 11 0.00038 34.3 11.0 76 55-158 275-350 (417)
240 3eie_A Vacuolar protein sortin 81.9 0.88 3E-05 40.3 3.3 19 24-42 51-69 (322)
241 3u4q_B ATP-dependent helicase/ 81.8 1.1 3.9E-05 47.4 4.6 40 27-67 4-43 (1166)
242 1lvg_A Guanylate kinase, GMP k 81.6 0.93 3.2E-05 36.9 3.1 19 23-41 3-21 (198)
243 2ze6_A Isopentenyl transferase 81.5 0.93 3.2E-05 38.6 3.2 18 26-43 3-20 (253)
244 1sxj_E Activator 1 40 kDa subu 81.5 1.2 4.1E-05 39.9 4.1 33 9-41 18-53 (354)
245 4b4t_H 26S protease regulatory 81.5 0.82 2.8E-05 42.4 2.9 18 24-41 243-260 (467)
246 3tau_A Guanylate kinase, GMP k 81.3 0.97 3.3E-05 37.1 3.1 19 23-41 7-25 (208)
247 3pfi_A Holliday junction ATP-d 81.2 1.5 5.2E-05 39.0 4.7 17 25-41 56-72 (338)
248 2ehv_A Hypothetical protein PH 81.2 1.5 5.1E-05 36.9 4.4 31 15-45 20-51 (251)
249 3f9v_A Minichromosome maintena 81.1 1 3.6E-05 43.7 3.7 15 26-40 329-343 (595)
250 1lv7_A FTSH; alpha/beta domain 81.0 0.87 3E-05 38.8 2.8 18 24-41 45-62 (257)
251 3pxg_A Negative regulator of g 81.0 0.74 2.5E-05 43.3 2.6 21 23-43 200-220 (468)
252 2ius_A DNA translocase FTSK; n 80.6 1.5 5.1E-05 41.4 4.4 43 23-65 166-208 (512)
253 2px0_A Flagellar biosynthesis 80.5 1.9 6.4E-05 37.6 4.8 37 24-63 105-141 (296)
254 2qp9_X Vacuolar protein sortin 80.3 1.2 4E-05 40.2 3.6 19 24-42 84-102 (355)
255 1in4_A RUVB, holliday junction 80.3 0.43 1.5E-05 42.6 0.7 17 25-41 52-68 (334)
256 3k1j_A LON protease, ATP-depen 80.1 0.67 2.3E-05 45.2 2.0 32 10-41 46-77 (604)
257 1zp6_A Hypothetical protein AT 80.1 0.88 3E-05 36.5 2.5 18 23-40 8-25 (191)
258 2iut_A DNA translocase FTSK; n 80.1 1.5 5.2E-05 41.9 4.3 43 24-66 214-256 (574)
259 1um8_A ATP-dependent CLP prote 80.1 1.2 4E-05 40.5 3.5 19 24-42 72-90 (376)
260 1qde_A EIF4A, translation init 80.0 2.8 9.5E-05 34.6 5.6 117 286-411 81-209 (224)
261 3fht_A ATP-dependent RNA helic 80.0 16 0.00053 33.1 11.3 75 55-158 265-340 (412)
262 2z43_A DNA repair and recombin 79.9 2.7 9.2E-05 37.2 5.8 53 14-66 96-151 (324)
263 3jvv_A Twitching mobility prot 79.8 2 6.8E-05 38.6 4.9 17 24-40 123-139 (356)
264 3lw7_A Adenylate kinase relate 79.8 0.8 2.8E-05 36.0 2.1 17 26-42 3-19 (179)
265 2v9p_A Replication protein E1; 79.8 1.4 4.8E-05 38.6 3.7 29 13-41 115-143 (305)
266 1n0w_A DNA repair protein RAD5 79.7 1.4 4.8E-05 36.9 3.7 53 13-65 12-67 (243)
267 3tr0_A Guanylate kinase, GMP k 79.6 1.2 4.3E-05 36.1 3.3 19 23-41 6-24 (205)
268 3crm_A TRNA delta(2)-isopenten 79.5 1.2 4E-05 39.3 3.2 19 25-43 6-24 (323)
269 1y63_A LMAJ004144AAA protein; 79.4 1.4 4.9E-05 35.2 3.5 19 23-41 9-27 (184)
270 2x8a_A Nuclear valosin-contain 79.1 1.6 5.5E-05 37.6 3.9 17 25-41 45-61 (274)
271 2p5t_B PEZT; postsegregational 79.1 1.6 5.5E-05 37.0 3.9 18 25-42 33-50 (253)
272 2j41_A Guanylate kinase; GMP, 79.0 1.3 4.6E-05 36.0 3.3 19 23-41 5-23 (207)
273 2d7d_A Uvrabc system protein B 78.9 13 0.00046 36.5 10.8 81 55-164 444-525 (661)
274 2i1q_A DNA repair and recombin 78.9 2 6.9E-05 37.9 4.6 35 13-47 86-121 (322)
275 1kag_A SKI, shikimate kinase I 78.8 1.4 4.8E-05 34.7 3.2 18 24-41 4-21 (173)
276 1c4o_A DNA nucleotide excision 78.6 15 0.00051 36.2 11.1 80 55-163 438-518 (664)
277 1qhx_A CPT, protein (chloramph 78.3 1.3 4.6E-05 34.9 3.0 18 24-41 3-20 (178)
278 3ney_A 55 kDa erythrocyte memb 78.3 1.6 5.4E-05 35.4 3.4 18 23-40 18-35 (197)
279 1ixz_A ATP-dependent metallopr 78.3 1.7 5.9E-05 36.8 3.9 17 25-41 50-66 (254)
280 3pey_A ATP-dependent RNA helic 78.0 11 0.00038 33.9 9.5 78 55-161 242-320 (395)
281 3d8b_A Fidgetin-like protein 1 77.9 1.5 5.2E-05 39.5 3.5 19 24-42 117-135 (357)
282 3d3q_A TRNA delta(2)-isopenten 77.6 1.5 5E-05 39.0 3.2 18 26-43 9-26 (340)
283 3umf_A Adenylate kinase; rossm 77.6 1.8 6.2E-05 35.7 3.6 19 25-43 30-48 (217)
284 1ly1_A Polynucleotide kinase; 77.5 1.4 4.7E-05 34.9 2.8 16 26-41 4-19 (181)
285 3dc4_A Kinesin-like protein NO 77.4 0.51 1.7E-05 42.1 0.2 33 8-40 73-111 (344)
286 1z6g_A Guanylate kinase; struc 77.4 1.7 5.8E-05 35.9 3.4 21 20-40 19-39 (218)
287 1ry6_A Internal kinesin; kines 77.3 0.66 2.3E-05 41.6 0.9 33 8-40 62-101 (360)
288 3kb2_A SPBC2 prophage-derived 77.3 1.4 4.8E-05 34.5 2.8 17 26-42 3-19 (173)
289 3c8u_A Fructokinase; YP_612366 77.2 1.8 6.1E-05 35.4 3.5 18 23-40 21-38 (208)
290 3nwn_A Kinesin-like protein KI 77.2 0.45 1.5E-05 42.7 -0.2 32 9-40 84-121 (359)
291 3bfn_A Kinesin-like protein KI 77.2 0.78 2.7E-05 41.5 1.4 34 7-40 76-115 (388)
292 1g41_A Heat shock protein HSLU 77.0 1.2 4.2E-05 41.1 2.7 18 24-41 50-67 (444)
293 1bg2_A Kinesin; motor protein, 77.0 0.52 1.8E-05 41.7 0.2 33 8-40 56-94 (325)
294 1v5w_A DMC1, meiotic recombina 77.0 1.8 6.2E-05 38.7 3.8 53 14-66 111-166 (343)
295 1s2m_A Putative ATP-dependent 77.0 14 0.00049 33.3 10.0 119 286-408 88-214 (400)
296 1gku_B Reverse gyrase, TOP-RG; 77.0 3.7 0.00013 42.9 6.5 79 286-366 98-183 (1054)
297 3sr0_A Adenylate kinase; phosp 76.9 1.8 6.1E-05 35.4 3.4 18 27-44 3-20 (206)
298 2ewv_A Twitching motility prot 76.8 1.3 4.5E-05 40.1 2.8 19 22-40 134-152 (372)
299 1hqc_A RUVB; extended AAA-ATPa 76.6 1.5 5.2E-05 38.6 3.1 18 24-41 38-55 (324)
300 1goj_A Kinesin, kinesin heavy 76.4 1.1 3.9E-05 40.0 2.2 33 8-40 59-97 (355)
301 1q0u_A Bstdead; DEAD protein, 76.2 1.7 5.8E-05 35.8 3.1 76 287-366 72-158 (219)
302 1zuh_A Shikimate kinase; alpha 76.2 1.6 5.6E-05 34.1 2.9 20 24-43 7-26 (168)
303 2gza_A Type IV secretion syste 76.2 1.5 5E-05 39.6 2.9 19 22-40 173-191 (361)
304 4a74_A DNA repair and recombin 76.0 1.4 4.9E-05 36.5 2.7 31 13-43 13-44 (231)
305 3b85_A Phosphate starvation-in 75.9 2.2 7.6E-05 34.9 3.7 28 9-40 11-38 (208)
306 3a00_A Guanylate kinase, GMP k 75.8 1.9 6.5E-05 34.5 3.2 16 25-40 2-17 (186)
307 2db3_A ATP-dependent RNA helic 75.8 25 0.00087 32.3 11.4 72 58-158 302-374 (434)
308 3cmw_A Protein RECA, recombina 75.7 2.9 0.0001 45.5 5.4 51 12-66 20-72 (1706)
309 1c9k_A COBU, adenosylcobinamid 75.7 1.8 6.3E-05 34.4 3.0 45 27-79 2-46 (180)
310 4gp7_A Metallophosphoesterase; 75.6 1.1 3.9E-05 35.3 1.8 19 23-41 8-26 (171)
311 3hu3_A Transitional endoplasmi 75.5 2.1 7.2E-05 40.4 3.9 19 23-41 237-255 (489)
312 2zan_A Vacuolar protein sortin 75.5 1.7 5.7E-05 40.5 3.2 19 24-42 167-185 (444)
313 1wp9_A ATP-dependent RNA helic 75.4 23 0.00079 32.7 11.3 79 55-162 360-447 (494)
314 3eph_A TRNA isopentenyltransfe 75.1 1.7 5.7E-05 39.6 2.9 19 26-44 4-22 (409)
315 4eun_A Thermoresistant glucoki 75.1 1.9 6.6E-05 34.9 3.1 18 24-41 29-46 (200)
316 2j0s_A ATP-dependent RNA helic 74.8 21 0.00073 32.3 10.6 76 55-159 275-351 (410)
317 2y65_A Kinesin, kinesin heavy 74.8 0.65 2.2E-05 41.8 0.2 34 7-40 62-101 (365)
318 3cm0_A Adenylate kinase; ATP-b 74.5 1.4 4.8E-05 35.2 2.1 20 24-43 4-23 (186)
319 4a14_A Kinesin, kinesin-like p 74.5 0.68 2.3E-05 41.4 0.2 35 7-41 61-101 (344)
320 1fnn_A CDC6P, cell division co 74.4 1.5 5.3E-05 39.7 2.6 16 26-41 46-61 (389)
321 3pxi_A Negative regulator of g 74.3 1.4 4.9E-05 44.2 2.6 21 23-43 200-220 (758)
322 1iy2_A ATP-dependent metallopr 74.3 2.6 8.8E-05 36.3 3.9 17 25-41 74-90 (278)
323 1kht_A Adenylate kinase; phosp 74.3 2 6.7E-05 34.4 3.0 19 24-42 3-21 (192)
324 2zfi_A Kinesin-like protein KI 74.1 0.67 2.3E-05 41.8 0.1 33 8-40 68-106 (366)
325 1svm_A Large T antigen; AAA+ f 74.0 2.8 9.5E-05 37.9 4.1 29 13-41 158-186 (377)
326 3nwj_A ATSK2; P loop, shikimat 73.8 1.9 6.5E-05 36.5 2.8 31 12-42 33-66 (250)
327 1knq_A Gluconate kinase; ALFA/ 73.8 1.8 6.1E-05 34.1 2.6 18 24-41 8-25 (175)
328 3cmu_A Protein RECA, recombina 73.7 2.9 9.9E-05 46.3 4.8 49 13-65 1068-1118(2050)
329 2v54_A DTMP kinase, thymidylat 73.6 2.4 8.3E-05 34.3 3.4 20 23-42 3-22 (204)
330 3b6u_A Kinesin-like protein KI 73.6 0.61 2.1E-05 42.0 -0.3 34 7-40 79-118 (372)
331 2pt7_A CAG-ALFA; ATPase, prote 73.5 3 0.0001 37.0 4.2 18 23-40 170-187 (330)
332 1via_A Shikimate kinase; struc 73.5 2.2 7.6E-05 33.6 3.1 19 25-43 5-23 (175)
333 3pxi_A Negative regulator of g 73.2 0.8 2.7E-05 46.1 0.4 17 26-42 523-539 (758)
334 3fb4_A Adenylate kinase; psych 73.2 2.3 8E-05 34.8 3.3 18 26-43 2-19 (216)
335 3t61_A Gluconokinase; PSI-biol 73.2 2 6.9E-05 34.8 2.8 18 25-42 19-36 (202)
336 2wbe_C Bipolar kinesin KRP-130 73.1 0.76 2.6E-05 41.5 0.2 33 8-40 79-117 (373)
337 2qt1_A Nicotinamide riboside k 72.9 1.9 6.4E-05 35.2 2.6 21 21-41 18-38 (207)
338 1znw_A Guanylate kinase, GMP k 72.9 2.4 8.2E-05 34.6 3.2 18 23-40 19-36 (207)
339 2rhm_A Putative kinase; P-loop 72.8 2 7E-05 34.3 2.7 19 24-42 5-23 (193)
340 1g8p_A Magnesium-chelatase 38 72.7 1.4 4.9E-05 39.3 1.9 18 24-41 45-62 (350)
341 3uie_A Adenylyl-sulfate kinase 72.5 2 7E-05 34.8 2.7 20 23-42 24-43 (200)
342 3dl0_A Adenylate kinase; phosp 72.4 2.4 8E-05 34.8 3.1 18 26-43 2-19 (216)
343 1ex7_A Guanylate kinase; subst 72.2 3.1 0.00011 33.3 3.6 16 25-40 2-17 (186)
344 1nlf_A Regulatory protein REPA 71.9 1.2 4.1E-05 38.5 1.1 48 19-67 25-79 (279)
345 1hv8_A Putative ATP-dependent 71.9 27 0.00091 30.9 10.3 78 55-160 237-314 (367)
346 1tf7_A KAIC; homohexamer, hexa 71.6 3.5 0.00012 39.3 4.4 50 11-63 25-75 (525)
347 2iyv_A Shikimate kinase, SK; t 71.5 2.8 9.6E-05 33.3 3.3 19 25-43 3-21 (184)
348 2v3c_C SRP54, signal recogniti 71.4 4.2 0.00014 37.6 4.7 35 25-63 100-134 (432)
349 1s96_A Guanylate kinase, GMP k 71.4 2.7 9.1E-05 34.8 3.1 20 21-40 13-32 (219)
350 1vma_A Cell division protein F 71.3 3.9 0.00013 35.8 4.3 35 25-63 105-139 (306)
351 1tev_A UMP-CMP kinase; ploop, 71.2 2.4 8.2E-05 33.9 2.8 18 25-42 4-21 (196)
352 1rj9_A FTSY, signal recognitio 71.2 5.1 0.00018 35.0 5.1 36 24-63 102-137 (304)
353 2l82_A Designed protein OR32; 71.2 23 0.0008 24.7 9.1 131 290-428 5-146 (162)
354 1x88_A Kinesin-like protein KI 71.1 0.65 2.2E-05 41.7 -0.7 33 8-40 67-105 (359)
355 2bdt_A BH3686; alpha-beta prot 71.0 2.5 8.5E-05 33.8 2.9 16 26-41 4-19 (189)
356 3m6a_A ATP-dependent protease 70.4 4 0.00014 39.1 4.5 19 23-41 107-125 (543)
357 1f9v_A Kinesin-like protein KA 70.3 2.5 8.6E-05 37.7 2.9 33 9-41 65-102 (347)
358 1aky_A Adenylate kinase; ATP:A 70.2 2.9 0.0001 34.4 3.2 20 24-43 4-23 (220)
359 1nks_A Adenylate kinase; therm 70.1 2.6 8.8E-05 33.7 2.8 18 26-43 3-20 (194)
360 1zd8_A GTP:AMP phosphotransfer 70.1 2.4 8.2E-05 35.1 2.6 18 24-41 7-24 (227)
361 1zak_A Adenylate kinase; ATP:A 70.1 3.3 0.00011 34.2 3.5 20 24-43 5-24 (222)
362 1gvn_B Zeta; postsegregational 70.1 2.3 7.9E-05 36.9 2.6 16 26-41 35-50 (287)
363 1e6c_A Shikimate kinase; phosp 70.0 3 0.0001 32.6 3.1 19 25-43 3-21 (173)
364 2c95_A Adenylate kinase 1; tra 70.0 2.5 8.7E-05 33.9 2.7 20 24-43 9-28 (196)
365 3b9q_A Chloroplast SRP recepto 69.9 5.1 0.00018 34.9 4.8 36 24-63 100-135 (302)
366 1sxj_A Activator 1 95 kDa subu 69.6 2.7 9.3E-05 40.0 3.2 19 25-43 78-96 (516)
367 1htw_A HI0065; nucleotide-bind 69.6 4.1 0.00014 31.6 3.7 20 21-40 30-49 (158)
368 3t0q_A AGR253WP; kinesin, alph 69.3 2.4 8.3E-05 37.8 2.6 33 9-41 66-103 (349)
369 3bs4_A Uncharacterized protein 69.3 6.3 0.00021 33.5 5.0 62 14-80 10-72 (260)
370 2vhj_A Ntpase P4, P4; non- hyd 69.2 2.8 9.4E-05 36.9 2.8 23 24-46 123-145 (331)
371 2cdn_A Adenylate kinase; phosp 69.0 3.7 0.00013 33.1 3.5 19 25-43 21-39 (201)
372 1zu4_A FTSY; GTPase, signal re 68.9 5.5 0.00019 35.1 4.8 35 25-63 106-140 (320)
373 1ye8_A Protein THEP1, hypothet 68.8 2.9 9.9E-05 33.2 2.7 15 26-40 2-16 (178)
374 2ce7_A Cell division protein F 68.8 2.6 9E-05 39.5 2.8 17 25-41 50-66 (476)
375 3lda_A DNA repair protein RAD5 68.6 4.2 0.00014 37.1 4.1 52 14-65 167-221 (400)
376 3lnc_A Guanylate kinase, GMP k 68.5 2.3 7.8E-05 35.4 2.2 18 23-40 26-43 (231)
377 1ak2_A Adenylate kinase isoenz 68.4 3.9 0.00013 34.0 3.6 20 24-43 16-35 (233)
378 1qf9_A UMP/CMP kinase, protein 68.2 2.7 9.2E-05 33.6 2.5 19 25-43 7-25 (194)
379 2bwj_A Adenylate kinase 5; pho 68.2 2.7 9.1E-05 33.8 2.5 19 24-42 12-30 (199)
380 2jaq_A Deoxyguanosine kinase; 68.1 3 0.0001 33.6 2.8 17 26-42 2-18 (205)
381 2i3b_A HCR-ntpase, human cance 68.0 3.7 0.00013 33.0 3.2 18 24-41 1-18 (189)
382 1cke_A CK, MSSA, protein (cyti 68.0 3.5 0.00012 34.0 3.2 18 25-42 6-23 (227)
383 2wwf_A Thymidilate kinase, put 67.5 3.7 0.00013 33.4 3.2 21 23-43 9-29 (212)
384 1ukz_A Uridylate kinase; trans 67.3 3.3 0.00011 33.5 2.9 16 26-41 17-32 (203)
385 2vvg_A Kinesin-2; motor protei 67.3 3.5 0.00012 36.8 3.2 34 7-40 67-106 (350)
386 4etp_A Kinesin-like protein KA 67.1 3.6 0.00012 37.6 3.3 16 26-41 143-158 (403)
387 2h58_A Kinesin-like protein KI 67.1 3.6 0.00012 36.4 3.2 15 26-40 83-97 (330)
388 1r6b_X CLPA protein; AAA+, N-t 66.9 1.1 3.6E-05 45.2 -0.3 17 26-42 490-506 (758)
389 3lre_A Kinesin-like protein KI 66.8 3.6 0.00012 36.8 3.1 33 8-40 84-122 (355)
390 3tif_A Uncharacterized ABC tra 66.7 2.7 9.1E-05 35.2 2.2 21 20-40 27-47 (235)
391 1e4v_A Adenylate kinase; trans 66.6 2.9 9.8E-05 34.3 2.4 18 26-43 2-19 (214)
392 2pt5_A Shikimate kinase, SK; a 66.6 3.5 0.00012 32.0 2.8 17 26-42 2-18 (168)
393 2plr_A DTMP kinase, probable t 66.6 3.4 0.00012 33.6 2.8 20 24-43 4-23 (213)
394 1z5z_A Helicase of the SNF2/RA 66.6 56 0.0019 27.7 10.6 60 33-99 93-152 (271)
395 2jeo_A Uridine-cytidine kinase 66.4 3.3 0.00011 34.8 2.7 21 21-41 22-42 (245)
396 3l0o_A Transcription terminati 66.3 8.7 0.0003 34.8 5.4 29 12-41 164-192 (427)
397 3tlx_A Adenylate kinase 2; str 66.1 4.2 0.00014 34.1 3.4 20 24-43 29-48 (243)
398 1ypw_A Transitional endoplasmi 66.1 4.4 0.00015 40.9 4.0 20 22-41 236-255 (806)
399 2yvu_A Probable adenylyl-sulfa 66.1 3.4 0.00012 32.9 2.7 20 24-43 13-32 (186)
400 1f2t_A RAD50 ABC-ATPase; DNA d 65.8 3 0.0001 32.0 2.2 16 25-40 24-39 (149)
401 1t5c_A CENP-E protein, centrom 65.8 3.4 0.00012 36.9 2.8 33 8-40 56-94 (349)
402 2pbr_A DTMP kinase, thymidylat 65.7 3.7 0.00013 32.8 2.8 17 27-43 3-19 (195)
403 4gl2_A Interferon-induced heli 65.7 1.7 5.7E-05 43.2 0.9 75 288-366 57-144 (699)
404 1v8k_A Kinesin-like protein KI 65.4 3.2 0.00011 37.9 2.5 34 8-41 133-172 (410)
405 2pez_A Bifunctional 3'-phospho 65.4 3.6 0.00012 32.5 2.7 19 24-42 5-23 (179)
406 3a4m_A L-seryl-tRNA(SEC) kinas 65.4 3.6 0.00012 35.0 2.8 19 25-43 5-23 (260)
407 1jjv_A Dephospho-COA kinase; P 65.3 3.7 0.00013 33.3 2.8 15 27-41 5-19 (206)
408 2og2_A Putative signal recogni 64.9 7.1 0.00024 35.0 4.7 36 24-63 157-192 (359)
409 2cbz_A Multidrug resistance-as 64.9 3 0.0001 34.9 2.2 20 21-40 28-47 (237)
410 2xb4_A Adenylate kinase; ATP-b 64.9 3.8 0.00013 33.8 2.8 17 27-43 3-19 (223)
411 2z0h_A DTMP kinase, thymidylat 64.8 4 0.00014 32.7 2.9 17 27-43 3-19 (197)
412 2nr8_A Kinesin-like protein KI 64.6 3.7 0.00013 36.8 2.8 32 9-40 83-120 (358)
413 3e70_C DPA, signal recognition 64.6 7.3 0.00025 34.4 4.7 36 24-63 129-164 (328)
414 2obl_A ESCN; ATPase, hydrolase 64.6 4.2 0.00014 36.3 3.2 29 11-40 59-87 (347)
415 3gbj_A KIF13B protein; kinesin 64.5 3.7 0.00013 36.8 2.8 33 8-40 71-109 (354)
416 1nn5_A Similar to deoxythymidy 64.5 4.1 0.00014 33.2 2.9 20 24-43 9-28 (215)
417 3asz_A Uridine kinase; cytidin 64.4 3.3 0.00011 33.8 2.3 18 24-41 6-23 (211)
418 1xjc_A MOBB protein homolog; s 64.4 8.6 0.0003 30.1 4.6 17 25-41 5-21 (169)
419 2vli_A Antibiotic resistance p 64.2 3.5 0.00012 32.6 2.4 20 24-43 5-24 (183)
420 3u06_A Protein claret segregat 64.0 3.9 0.00013 37.4 2.9 15 26-40 141-155 (412)
421 2bbw_A Adenylate kinase 4, AK4 63.8 4.1 0.00014 34.2 2.8 17 25-41 28-44 (246)
422 3be4_A Adenylate kinase; malar 63.7 4.4 0.00015 33.3 3.0 19 25-43 6-24 (217)
423 2owm_A Nckin3-434, related to 63.7 4.4 0.00015 37.5 3.2 34 8-41 115-154 (443)
424 2f1r_A Molybdopterin-guanine d 63.5 2.8 9.6E-05 33.0 1.6 17 25-41 3-19 (171)
425 3fkq_A NTRC-like two-domain pr 63.4 18 0.00062 32.5 7.3 96 27-159 147-266 (373)
426 3nh6_A ATP-binding cassette SU 63.3 3.3 0.00011 36.2 2.2 20 21-40 77-96 (306)
427 1r6b_X CLPA protein; AAA+, N-t 63.3 6.9 0.00023 39.3 4.8 21 23-43 206-226 (758)
428 2if2_A Dephospho-COA kinase; a 63.0 3.8 0.00013 33.1 2.5 16 26-41 3-18 (204)
429 2heh_A KIF2C protein; kinesin, 62.9 3.9 0.00013 37.0 2.6 34 8-41 113-152 (387)
430 3oaa_A ATP synthase subunit al 62.6 30 0.001 32.4 8.4 62 12-78 151-214 (513)
431 1nij_A Hypothetical protein YJ 62.5 6 0.00021 34.8 3.8 16 25-40 5-20 (318)
432 3b6e_A Interferon-induced heli 62.5 5.8 0.0002 32.2 3.5 58 287-348 82-140 (216)
433 4e22_A Cytidylate kinase; P-lo 62.5 4.9 0.00017 34.0 3.1 18 24-41 27-44 (252)
434 2dhr_A FTSH; AAA+ protein, hex 62.5 4.1 0.00014 38.4 2.8 17 25-41 65-81 (499)
435 2rep_A Kinesin-like protein KI 62.3 4.3 0.00015 36.6 2.8 33 8-40 95-132 (376)
436 2yhs_A FTSY, cell division pro 62.1 9.5 0.00033 35.7 5.1 35 24-62 293-327 (503)
437 2dpy_A FLII, flagellum-specifi 62.1 7 0.00024 36.2 4.3 29 11-40 145-173 (438)
438 1sgw_A Putative ABC transporte 61.7 4.6 0.00016 33.2 2.7 20 21-40 32-51 (214)
439 2ga8_A Hypothetical 39.9 kDa p 61.5 7.7 0.00026 34.6 4.2 17 26-42 26-42 (359)
440 3tqf_A HPR(Ser) kinase; transf 61.5 4.1 0.00014 32.1 2.2 19 24-42 16-34 (181)
441 1fuu_A Yeast initiation factor 61.4 15 0.00051 33.0 6.4 76 286-366 88-170 (394)
442 1qvr_A CLPB protein; coiled co 61.3 1.5 5E-05 44.8 -0.5 37 9-45 562-609 (854)
443 3tqc_A Pantothenate kinase; bi 61.1 5.5 0.00019 35.1 3.2 15 27-41 95-109 (321)
444 3cob_A Kinesin heavy chain-lik 60.9 3.5 0.00012 37.0 2.0 34 7-40 58-96 (369)
445 1m7g_A Adenylylsulfate kinase; 60.7 5.2 0.00018 32.6 2.9 20 23-42 24-43 (211)
446 2xxa_A Signal recognition part 60.3 8.4 0.00029 35.6 4.4 35 26-63 102-136 (433)
447 3kta_A Chromosome segregation 60.3 5 0.00017 31.7 2.6 15 26-40 28-42 (182)
448 1uf9_A TT1252 protein; P-loop, 60.3 4.5 0.00016 32.5 2.4 17 26-42 10-26 (203)
449 2oca_A DAR protein, ATP-depend 60.2 43 0.0015 31.4 9.6 78 57-162 348-426 (510)
450 1tf5_A Preprotein translocase 60.1 19 0.00066 36.1 7.1 75 284-364 121-209 (844)
451 3tbk_A RIG-I helicase domain; 60.1 15 0.0005 35.0 6.4 76 287-366 52-135 (555)
452 3foj_A Uncharacterized protein 60.0 9.7 0.00033 26.5 3.9 37 286-325 55-91 (100)
453 2ghi_A Transport protein; mult 59.5 4.6 0.00016 34.4 2.4 20 21-40 43-62 (260)
454 1j8m_F SRP54, signal recogniti 59.4 8.6 0.00029 33.4 4.2 34 26-63 100-133 (297)
455 2grj_A Dephospho-COA kinase; T 59.4 5.8 0.0002 31.9 2.9 18 26-43 14-31 (192)
456 2pze_A Cystic fibrosis transme 59.3 4.8 0.00016 33.5 2.4 20 21-40 31-50 (229)
457 3eme_A Rhodanese-like domain p 59.3 9.8 0.00034 26.6 3.8 38 286-326 55-92 (103)
458 2r9v_A ATP synthase subunit al 59.2 32 0.0011 32.3 8.0 29 12-41 164-192 (515)
459 1w5s_A Origin recognition comp 59.1 4.1 0.00014 37.2 2.2 20 24-43 50-71 (412)
460 1b0u_A Histidine permease; ABC 58.9 4.4 0.00015 34.5 2.2 20 21-40 29-48 (262)
461 3cmw_A Protein RECA, recombina 58.9 7.4 0.00025 42.5 4.2 46 23-72 1430-1475(1706)
462 1ls1_A Signal recognition part 58.8 9.6 0.00033 33.1 4.4 36 24-63 98-133 (295)
463 3cf2_A TER ATPase, transitiona 58.8 5.1 0.00017 40.2 2.8 17 25-41 239-255 (806)
464 3gk5_A Uncharacterized rhodane 58.7 9.5 0.00033 27.1 3.7 38 286-326 54-91 (108)
465 3gfo_A Cobalt import ATP-bindi 58.6 4.8 0.00016 34.6 2.4 20 21-40 31-50 (275)
466 1sky_E F1-ATPase, F1-ATP synth 58.6 62 0.0021 30.1 9.8 34 12-46 140-173 (473)
467 1vpl_A ABC transporter, ATP-bi 58.6 4.5 0.00015 34.3 2.2 20 21-40 38-57 (256)
468 2olj_A Amino acid ABC transpor 58.5 4.5 0.00016 34.5 2.2 20 21-40 47-66 (263)
469 2zu0_C Probable ATP-dependent 58.5 5.8 0.0002 33.9 2.9 20 21-40 43-62 (267)
470 3iwh_A Rhodanese-like domain p 58.4 11 0.00036 26.7 3.8 37 286-325 55-91 (103)
471 3cf2_A TER ATPase, transitiona 58.2 4.9 0.00017 40.3 2.7 17 25-41 512-528 (806)
472 2fsf_A Preprotein translocase 58.1 18 0.00062 36.3 6.5 58 285-348 113-171 (853)
473 1yks_A Genome polyprotein [con 58.0 31 0.001 31.8 7.9 69 56-157 177-245 (440)
474 2yz2_A Putative ABC transporte 58.0 4.7 0.00016 34.4 2.2 21 20-40 29-49 (266)
475 1g6h_A High-affinity branched- 57.8 5.2 0.00018 33.9 2.5 20 21-40 30-49 (257)
476 2yjt_D ATP-dependent RNA helic 62.4 2.2 7.4E-05 33.6 0.0 76 55-158 29-104 (170)
477 1ji0_A ABC transporter; ATP bi 57.6 5.3 0.00018 33.4 2.5 20 21-40 29-48 (240)
478 4eaq_A DTMP kinase, thymidylat 57.6 6.7 0.00023 32.6 3.0 20 23-42 25-44 (229)
479 2pcj_A ABC transporter, lipopr 57.4 4.7 0.00016 33.4 2.0 20 21-40 27-46 (224)
480 2fna_A Conserved hypothetical 57.3 8.7 0.0003 34.0 4.0 17 25-41 31-47 (357)
481 4a2q_A RIG-I, retinoic acid in 57.3 17 0.00058 36.7 6.5 76 287-366 296-379 (797)
482 4g1u_C Hemin import ATP-bindin 57.3 5.3 0.00018 34.1 2.4 20 21-40 34-53 (266)
483 2qe7_A ATP synthase subunit al 57.2 11 0.00038 35.2 4.6 29 12-41 151-179 (502)
484 2p6r_A Afuhel308 helicase; pro 57.1 14 0.00049 36.5 5.9 91 286-383 67-168 (702)
485 1odf_A YGR205W, hypothetical 3 57.1 6.2 0.00021 34.2 2.8 17 26-42 33-49 (290)
486 1vht_A Dephospho-COA kinase; s 57.0 6.3 0.00022 32.2 2.8 16 26-41 6-21 (218)
487 1mv5_A LMRA, multidrug resista 57.0 4.4 0.00015 34.0 1.8 20 21-40 25-44 (243)
488 4a2p_A RIG-I, retinoic acid in 57.0 13 0.00046 35.3 5.5 76 287-366 55-138 (556)
489 2ff7_A Alpha-hemolysin translo 56.8 6 0.0002 33.3 2.6 20 21-40 32-51 (247)
490 1rz3_A Hypothetical protein rb 56.6 5.8 0.0002 32.0 2.5 17 25-41 23-39 (201)
491 1ltq_A Polynucleotide kinase; 56.6 6.2 0.00021 34.2 2.8 16 26-41 4-19 (301)
492 1uj2_A Uridine-cytidine kinase 56.2 6.7 0.00023 33.1 2.9 17 26-42 24-40 (252)
493 2ixe_A Antigen peptide transpo 56.1 5.6 0.00019 34.1 2.4 20 21-40 42-61 (271)
494 2qm8_A GTPase/ATPase; G protei 56.1 16 0.00053 32.4 5.4 29 12-40 43-71 (337)
495 1nkt_A Preprotein translocase 56.1 25 0.00085 35.5 7.1 75 284-364 149-237 (922)
496 3dkp_A Probable ATP-dependent 56.1 16 0.00055 30.3 5.3 122 287-411 98-233 (245)
497 2qi9_C Vitamin B12 import ATP- 56.0 5.8 0.0002 33.4 2.4 19 22-40 24-42 (249)
498 4akg_A Glutathione S-transfera 55.9 6.4 0.00022 45.2 3.3 21 23-43 922-942 (2695)
499 3p32_A Probable GTPase RV1496/ 55.8 14 0.00049 32.9 5.1 19 25-43 80-98 (355)
500 2qen_A Walker-type ATPase; unk 55.8 7.6 0.00026 34.3 3.4 29 9-40 19-47 (350)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-51 Score=387.57 Aligned_cols=346 Identities=26% Similarity=0.423 Sum_probs=286.7
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc----CCccEEEEcCCHHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV----RCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~lil~P~~~l~~q~~~~~ 76 (436)
+||..|+|+|.+++..+.. ++++++++|||+|||++++++++..+...+. .++++||++||++|+.|+++.+
T Consensus 74 ~g~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 149 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEA 149 (434)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHH
Confidence 5899999999999988764 8999999999999999999999988876431 3568999999999999999999
Q ss_pred HHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEE
Q 013778 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 156 (436)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~i 156 (436)
.+++...++.+....|+.....+.. .+..+++|+|+||++|.+++.+.. ..+++++++
T Consensus 150 ~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~~~~l 207 (434)
T 2db3_A 150 RKFAFESYLKIGIVYGGTSFRHQNE---------------------CITRGCHVVIATPGRLLDFVDRTF-ITFEDTRFV 207 (434)
T ss_dssp HHHTTTSSCCCCEECTTSCHHHHHH---------------------HHTTCCSEEEECHHHHHHHHHTTS-CCCTTCCEE
T ss_pred HHHhccCCcEEEEEECCCCHHHHHH---------------------HhhcCCCEEEEChHHHHHHHHhCC-cccccCCeE
Confidence 9998877888888888887654432 234567999999999999988754 668899999
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013778 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+||||++.+.+|...+..++...... +..+.+++|||++....
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~------------------------------------~~~q~l~~SAT~~~~~~ 251 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMR------------------------------------PEHQTLMFSATFPEEIQ 251 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSC------------------------------------SSCEEEEEESCCCHHHH
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCC------------------------------------CCceEEEEeccCCHHHH
Confidence 999999999988888888887654211 23478999999988888
Q ss_pred hhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013778 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
.+....+.++..+........ ...+...........+...+.+++..... ++||||++++.++.+++.|.+.+ +.
T Consensus 252 ~~~~~~l~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~---~~ 326 (434)
T 2db3_A 252 RMAGEFLKNYVFVAIGIVGGA-CSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKE---FP 326 (434)
T ss_dssp HHHHTTCSSCEEEEESSTTCC-CTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTT---CC
T ss_pred HHHHHhccCCEEEEecccccc-ccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCC---CC
Confidence 888888888776655443322 22333334444556677788888877654 49999999999999999999876 88
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecc
Q 013778 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 396 (436)
+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.+|+||+||+||.|+.|.+++|+++
T Consensus 327 ~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 327 TTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -hhHHHHHHHHHHhcCCC
Q 013778 397 -DEVKRFKKLLQKADNDS 413 (436)
Q Consensus 397 -~~~~~~~~~~~~~~~~~ 413 (436)
.+......+.+.+....
T Consensus 407 ~~~~~~~~~l~~~l~~~~ 424 (434)
T 2db3_A 407 EKDRAIAADLVKILEGSG 424 (434)
T ss_dssp TTCGGGHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHcC
Confidence 45555666666554444
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.3e-49 Score=376.55 Aligned_cols=344 Identities=24% Similarity=0.425 Sum_probs=286.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.++++.++. ++++++.+|||+|||++++++++..+... ..+.++||++|+++|+.|+.+.+..++
T Consensus 55 ~g~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp HTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 4889999999999998875 78999999999999999999988776433 255689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...++.+....|+........ ....+++|+|+||+.+.+.+.... +.+.+++++|+||
T Consensus 130 ~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~ivv~Tp~~l~~~l~~~~-~~~~~~~~vViDE 187 (410)
T 2j0s_A 130 DYMNVQCHACIGGTNVGEDIR---------------------KLDYGQHVVAGTPGRVFDMIRRRS-LRTRAIKMLVLDE 187 (410)
T ss_dssp TTTTCCEEEECTTSCHHHHHH---------------------HHHHCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEET
T ss_pred ccCCeEEEEEECCCCHHHHHH---------------------HhhcCCCEEEcCHHHHHHHHHhCC-ccHhheeEEEEcc
Confidence 888888888888876655432 223456999999999999888743 6678899999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++.+.++...+..+...+. +..+.+++|||++........
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~~~ 229 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLP--------------------------------------PATQVVLISATLPHEILEMTN 229 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSC--------------------------------------TTCEEEEEESCCCHHHHTTGG
T ss_pred HHHHHhhhhHHHHHHHHHhCc--------------------------------------cCceEEEEEcCCCHHHHHHHH
Confidence 999988887777766665442 234689999999887777777
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013778 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
..+.++..+...............+........+...+..++.....+++||||++++.++.+++.|.+.+ ..+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~ 306 (410)
T 2j0s_A 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN---FTVSSM 306 (410)
T ss_dssp GTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTT---CCCEEE
T ss_pred HHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC---CceEEe
Confidence 77777766554433332222222233333344477888888888888899999999999999999999876 889999
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013778 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|+++..|+||+||+||.|++|.+++++.+.+..
T Consensus 307 h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 307 HGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred eCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 013778 401 RFKKLLQKADND 412 (436)
Q Consensus 401 ~~~~~~~~~~~~ 412 (436)
.++.+.+.+...
T Consensus 387 ~~~~i~~~~~~~ 398 (410)
T 2j0s_A 387 ILRDIEQYYSTQ 398 (410)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHhCCC
Confidence 999998887544
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-49 Score=376.27 Aligned_cols=356 Identities=29% Similarity=0.441 Sum_probs=286.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc-----------------CCccEEEEc
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----------------RCLRALVVL 63 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~-----------------~~~~~lil~ 63 (436)
+||..|+|+|.+++..+.. ++++++.+|||+|||++++++++..+...+. ..+++||++
T Consensus 33 ~~~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 108 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 108 (417)
T ss_dssp HTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEEC
T ss_pred CCCCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEEC
Confidence 4899999999999987764 7999999999999999999999988765421 125799999
Q ss_pred CCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhh
Q 013778 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 143 (436)
Q Consensus 64 P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~ 143 (436)
|+++|+.|+++.+..++...++.+..+.|+........ .+..+++|+|+||++|.+.+.
T Consensus 109 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~I~v~Tp~~l~~~l~ 167 (417)
T 2i4i_A 109 PTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---------------------DLERGCHLLVATPGRLVDMME 167 (417)
T ss_dssp SSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---------------------HHTTCCSEEEECHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---------------------HhhCCCCEEEEChHHHHHHHH
Confidence 99999999999999998877888999998877655432 233457999999999999888
Q ss_pred cCCCcccCCccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCcccee
Q 013778 144 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 223 (436)
Q Consensus 144 ~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (436)
... +.+++++++|+||||++.+.++...+..+........ ....+
T Consensus 168 ~~~-~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~----------------------------------~~~~~ 212 (417)
T 2i4i_A 168 RGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP----------------------------------KGVRH 212 (417)
T ss_dssp TTS-BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC----------------------------------BTTBE
T ss_pred cCC-cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC----------------------------------cCCcE
Confidence 744 6688999999999999988887777777765432211 02347
Q ss_pred eeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc-CCCcEEEEcCCchhHHH
Q 013778 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHR 302 (436)
Q Consensus 224 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~ 302 (436)
.+++|||+++.........+.++.......... ....+...........+...+.++++.. .++++||||+++++++.
T Consensus 213 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~ 291 (417)
T 2i4i_A 213 TMMFSATFPKEIQMLARDFLDEYIFLAVGRVGS-TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 291 (417)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCC-CccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHH
Confidence 899999998777777666667666554333221 2223333344445566777888888776 46789999999999999
Q ss_pred HHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcc
Q 013778 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382 (436)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~ 382 (436)
+++.|++.+ ..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|.++..|+||+||+|
T Consensus 292 l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~g 368 (417)
T 2i4i_A 292 LEDFLYHEG---YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 368 (417)
T ss_dssp HHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBC
T ss_pred HHHHHHHCC---CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccc
Confidence 999999876 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEecchhHHHHHHHHHHhcCCCCCCCCCChhh
Q 013778 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423 (436)
Q Consensus 383 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (436)
|.|+.|.+++++++.+...+..+.+.+.... +.++..+
T Consensus 369 R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~l 406 (417)
T 2i4i_A 369 RVGNLGLATSFFNERNINITKDLLDLLVEAK---QEVPSWL 406 (417)
T ss_dssp C--CCEEEEEEECGGGGGGHHHHHHHHHHTT---CCCCHHH
T ss_pred cCCCCceEEEEEccccHHHHHHHHHHHHHhc---CcCCHHH
Confidence 9999999999999999988888888876554 3455443
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6e-49 Score=370.79 Aligned_cols=342 Identities=28% Similarity=0.482 Sum_probs=284.5
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.++++.+.. ++++++.+|||+|||++++++++..+.... .+.+++|++|+++|+.|+.+.+..++
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKL-NKIQALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp TTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhcc-CCccEEEEcCCHHHHHHHHHHHHHHh
Confidence 5899999999999998875 688999999999999999999888765432 45589999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...++.+....|+........ ....+++|+|+||+++.+.+.... ..+++++++|+||
T Consensus 114 ~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDE 171 (400)
T 1s2m_A 114 KHCGISCMVTTGGTNLRDDIL---------------------RLNETVHILVGTPGRVLDLASRKV-ADLSDCSLFIMDE 171 (400)
T ss_dssp TTTTCCEEEECSSSCHHHHHH---------------------HTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEES
T ss_pred cccCceEEEEeCCcchHHHHH---------------------HhcCCCCEEEEchHHHHHHHHhCC-cccccCCEEEEeC
Confidence 887888888888876554432 223456999999999998887643 5688999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++.+..+...+..+...+. +..+.+++|||++........
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~lSAT~~~~~~~~~~ 213 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLP--------------------------------------PTHQSLLFSATFPLTVKEFMV 213 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSC--------------------------------------SSCEEEEEESCCCHHHHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCC--------------------------------------cCceEEEEEecCCHHHHHHHH
Confidence 999988888777777765442 123679999999877776666
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013778 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
..+..+........ ........+........+...+..++.....+++||||++++.++.+++.|++.+ ..+..+
T Consensus 214 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~ 288 (400)
T 1s2m_A 214 KHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG---YSCYYS 288 (400)
T ss_dssp HHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT---CCEEEE
T ss_pred HHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC---CCeEEe
Confidence 66666654432221 1122233344444556677778888888888899999999999999999999876 889999
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013778 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|+++..|+||+||+||.|++|.|+++++..+..
T Consensus 289 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~ 368 (400)
T 1s2m_A 289 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 368 (400)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 013778 401 RFKKLLQKADND 412 (436)
Q Consensus 401 ~~~~~~~~~~~~ 412 (436)
.++++.+.+...
T Consensus 369 ~~~~i~~~~~~~ 380 (400)
T 1s2m_A 369 NLYKIEQELGTE 380 (400)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhCCC
Confidence 999999888544
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2e-49 Score=375.86 Aligned_cols=346 Identities=24% Similarity=0.407 Sum_probs=276.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+..|+++|.+++..++. ++++++.+|||+|||+++++++++.+.... .+.+++|++|+++|+.|+.+.+..++
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 132 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDL-KATQALVLAPTRELAQQIQKVVMALG 132 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcC-CceeEEEEeChHHHHHHHHHHHHHHh
Confidence 5899999999999988875 788999999999999999999998775542 45689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...+..+....|+.......... ....++|+|+||++|.+.+.... +.+.+++++|+||
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~~vViDE 191 (414)
T 3eiq_A 133 DYMGASCHACIGGTNVRAEVQKL--------------------QMEAPHIIVGTPGRVFDMLNRRY-LSPKYIKMFVLDE 191 (414)
T ss_dssp GGSCCCEEECCCCTTHHHHHHHH--------------------TTTCCSEEEECHHHHHHHHHHTS-SCSTTCCEEEECS
T ss_pred cccCceEEEEECCcchHHHHHHH--------------------hcCCCCEEEECHHHHHHHHHcCC-cccccCcEEEEEC
Confidence 88788888888887655543322 22456999999999999888744 5678899999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++.+.++...+..++..+. +..+.+++|||+.........
T Consensus 192 ah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~~~ 233 (414)
T 3eiq_A 192 ADEMLSRGFKDQIYDIFQKLN--------------------------------------SNTQVVLLSATMPSDVLEVTK 233 (414)
T ss_dssp HHHHHHTTTHHHHHHHHTTSC--------------------------------------TTCEEEEECSCCCHHHHHHHT
T ss_pred HHHhhccCcHHHHHHHHHhCC--------------------------------------CCCeEEEEEEecCHHHHHHHH
Confidence 999988877777777665542 234689999999887777777
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013778 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
..+.++..+...............+........+...+..++.....+++||||++++.++.+++.|.+.+ ..+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~ 310 (414)
T 3eiq_A 234 KFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD---FTVSAM 310 (414)
T ss_dssp TTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT---CCCEEC
T ss_pred HHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC---CeEEEe
Confidence 77777776655444443333333444444556688888888888888999999999999999999999876 889999
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013778 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|.+...|+||+||+||.|++|.|++++++.+..
T Consensus 311 h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 390 (414)
T 3eiq_A 311 HGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKR 390 (414)
T ss_dssp ---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHH
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 013778 401 RFKKLLQKADNDS 413 (436)
Q Consensus 401 ~~~~~~~~~~~~~ 413 (436)
.++.+.+.+....
T Consensus 391 ~~~~~~~~~~~~~ 403 (414)
T 3eiq_A 391 TLRDIETFYNTSI 403 (414)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCc
Confidence 9999988876443
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.1e-48 Score=363.44 Aligned_cols=343 Identities=24% Similarity=0.357 Sum_probs=279.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.++++.+.. ++++++.+|||+|||++++++++..+.... .+.++||++|+++|+.|+.+.+..+.
T Consensus 26 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HSCCSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCT-TCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccC-CCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 4889999999999988765 789999999999999999998887765432 45589999999999999999999987
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
... ++.+..+.|+.......... ....++|+|+||+++...+.... ..+++++++|+|
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~vViD 159 (391)
T 1xti_A 101 KYMPNVKVAVFFGGLSIKKDEEVL--------------------KKNCPHIVVGTPGRILALARNKS-LNLKHIKHFILD 159 (391)
T ss_dssp TTCTTCCEEEECTTSCHHHHHHHH--------------------HHSCCSEEEECHHHHHHHHHTTS-SCCTTCSEEEEC
T ss_pred hhCCCeEEEEEeCCCCHHHHHHHH--------------------hcCCCCEEEECHHHHHHHHHcCC-ccccccCEEEEe
Confidence 665 68888888887654443221 12335999999999999887644 568899999999
Q ss_pred hhhHHhhH-hHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013778 160 ETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 160 E~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
|||++.+. .+...+..++.... ...+.+++|||+.+.....
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~ 201 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTP--------------------------------------HEKQVMMFSATLSKEIRPV 201 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSC--------------------------------------SSSEEEEEESSCCSTHHHH
T ss_pred CHHHHhhccchHHHHHHHHhhCC--------------------------------------CCceEEEEEeeCCHHHHHH
Confidence 99998763 55555555554332 1236899999999887777
Q ss_pred hccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEE
Q 013778 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (436)
....+.++..+...............+........+...+.++++....+++||||+++++++.+++.|++.+ ..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~ 278 (391)
T 1xti_A 202 CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAI 278 (391)
T ss_dssp HHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTT---CCEE
T ss_pred HHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC---CcEE
Confidence 7777777766544433333333444455555666778888888888888999999999999999999999876 7899
Q ss_pred EeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchh
Q 013778 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 319 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
.+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|+++..|+|++||+||.|++|.+++++.+.+
T Consensus 279 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 279 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -HHHHHHHHHHhc
Q 013778 399 -VKRFKKLLQKAD 410 (436)
Q Consensus 399 -~~~~~~~~~~~~ 410 (436)
...++.+.+.+.
T Consensus 359 ~~~~~~~~~~~~~ 371 (391)
T 1xti_A 359 DAKILNDVQDRFE 371 (391)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhc
Confidence 455666666553
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.4e-48 Score=365.88 Aligned_cols=344 Identities=23% Similarity=0.347 Sum_probs=276.6
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.++++.+... .++++++.+|||+|||++++++++..+.... .+++++|++|+++|+.|+++.+..+.
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcC-CCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 58999999999999988862 3489999999999999999999998776543 55689999999999999999999987
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
... +..+....++...... ....++|+|+||+++.+.+.....+.+++++++|+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 120 KFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp TTSTTCCEEEECTTCCCCTT------------------------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred hhcccceEEEeecCcchhhh------------------------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 654 5666666666543221 123458999999999999877565678899999999
Q ss_pred hhhHHhh-HhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013778 160 ETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 160 E~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
|||++.+ ..+...+..+..... ...+.+++|||+.+.....
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~ 217 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLP--------------------------------------RNCQMLLFSATFEDSVWKF 217 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSC--------------------------------------TTCEEEEEESCCCHHHHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCC--------------------------------------CCceEEEEEeecCHHHHHH
Confidence 9999876 455555555554432 2347899999998877777
Q ss_pred hccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEE
Q 013778 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (436)
....+.++..+...............+........+...+..++.....+++||||+++++++.+++.|.+.+ ..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~ 294 (412)
T 3fht_A 218 AQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG---HQVA 294 (412)
T ss_dssp HHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT---CCCE
T ss_pred HHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC---CeEE
Confidence 7777777776655444333333333333333445677778888887788899999999999999999999876 8899
Q ss_pred EeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC------CChhHHHHHhhhcccCCCCceEEE
Q 013778 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFT 392 (436)
Q Consensus 319 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~ 392 (436)
.+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++
T Consensus 295 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 374 (412)
T 3fht_A 295 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 374 (412)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred EecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999 467899999999999999999999
Q ss_pred Eecchh-HHHHHHHHHHhcCC
Q 013778 393 LLHKDE-VKRFKKLLQKADND 412 (436)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~~~~ 412 (436)
+++..+ ...++.+.+.+...
T Consensus 375 ~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 375 MVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp EECSHHHHHHHHHHHHHHTCC
T ss_pred EEcChhhHHHHHHHHHHHCCc
Confidence 998765 66777777766543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.1e-48 Score=362.69 Aligned_cols=340 Identities=22% Similarity=0.326 Sum_probs=270.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+..|+|+|.++++.++.. .++++++.+|||+|||++++++++..+.... .+.++||++|+++|+.|+++.+..++
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-ASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCC-CCccEEEECCCHHHHHHHHHHHHHHh
Confidence 58999999999999988763 2389999999999999999999888765432 55689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...++.+....++...... ..+++|+|+||+.+.+.+.... ..+++++++|+||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiDE 153 (395)
T 3pey_A 100 KFTKITSQLIVPDSFEKNK-------------------------QINAQVIVGTPGTVLDLMRRKL-MQLQKIKIFVLDE 153 (395)
T ss_dssp TTSCCCEEEESTTSSCTTS-------------------------CBCCSEEEECHHHHHHHHHTTC-BCCTTCCEEEEET
T ss_pred cccCeeEEEEecCchhhhc-------------------------cCCCCEEEEcHHHHHHHHHcCC-cccccCCEEEEEC
Confidence 7777777777666432211 2246999999999999887643 5688999999999
Q ss_pred hhHHhh-HhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013778 161 TDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 161 ~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
||++.+ ..+...+..+..... ...+.+++|||+.+......
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~~ 195 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLP--------------------------------------KDTQLVLFSATFADAVRQYA 195 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSC--------------------------------------TTCEEEEEESCCCHHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCC--------------------------------------CCcEEEEEEecCCHHHHHHH
Confidence 999877 455555555554432 22468999999987777777
Q ss_pred ccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEE
Q 013778 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 319 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (436)
...+.++..................+........+...+..++.....+++||||+++++++.+++.|++.+ ..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~ 272 (395)
T 3pey_A 196 KKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEG---HEVSI 272 (395)
T ss_dssp HHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT---CCCEE
T ss_pred HHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC---CcEEE
Confidence 666666665544433333333222333333445566777777777778899999999999999999999876 88999
Q ss_pred eccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC------ChhHHHHHhhhcccCCCCceEEEE
Q 013778 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 320 ~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~------s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|+ ++..|+||+||+||.|++|.++++
T Consensus 273 ~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 273 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred ecchhH-HHHHHHHHHhc
Q 013778 394 LHKDEV-KRFKKLLQKAD 410 (436)
Q Consensus 394 ~~~~~~-~~~~~~~~~~~ 410 (436)
+...+. ..+..+.+.+.
T Consensus 353 ~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 353 VHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp ECSHHHHHHHHHHHHHTT
T ss_pred EechHHHHHHHHHHHHhC
Confidence 987654 45555555443
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.8e-47 Score=353.78 Aligned_cols=336 Identities=28% Similarity=0.472 Sum_probs=274.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.++++.++. .++++++.+|||+|||++++++++..+... .+.+++|++|+++|+.|+++.+..++
T Consensus 24 ~g~~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp HTCCSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 4889999999999998875 237899999999999999988888766543 45689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...++.+....|+.......... .+++|+|+||+.+.+.+.... ..+.+++++|+||
T Consensus 99 ~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiDE 155 (367)
T 1hv8_A 99 GNKNLKIAKIYGGKAIYPQIKAL----------------------KNANIVVGTPGRILDHINRGT-LNLKNVKYFILDE 155 (367)
T ss_dssp CSSCCCEEEECTTSCHHHHHHHH----------------------HTCSEEEECHHHHHHHHHTTC-SCTTSCCEEEEET
T ss_pred CCCCceEEEEECCcchHHHHhhc----------------------CCCCEEEecHHHHHHHHHcCC-cccccCCEEEEeC
Confidence 77778888888887654442211 246999999999999887643 5678999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++.+.++...+..+..... +..+.+++|||+.+.......
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~~~ 197 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACN--------------------------------------KDKRILLFSATMPREILNLAK 197 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSC--------------------------------------SSCEEEEECSSCCHHHHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCC--------------------------------------CCceEEEEeeccCHHHHHHHH
Confidence 999988777666666665432 123679999999876666555
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013778 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
..+.++........ ..+...........+...+...+. ....++||||+++++++.+++.|++.+ ..+..+
T Consensus 198 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~~~ 268 (367)
T 1hv8_A 198 KYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIG---FKAGAI 268 (367)
T ss_dssp HHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTT---CCEEEE
T ss_pred HHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcC---CCeEEe
Confidence 55555544432221 123333344445566666777665 456789999999999999999999876 889999
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013778 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|+|+..|.|++||+||.|++|.+++++++.+..
T Consensus 269 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 348 (367)
T 1hv8_A 269 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYK 348 (367)
T ss_dssp CSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHH
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 013778 401 RFKKLLQKADN 411 (436)
Q Consensus 401 ~~~~~~~~~~~ 411 (436)
.+..+.+.+..
T Consensus 349 ~~~~i~~~~~~ 359 (367)
T 1hv8_A 349 KLRYIERAMKL 359 (367)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 99998887743
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7e-47 Score=371.61 Aligned_cols=357 Identities=28% Similarity=0.415 Sum_probs=275.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh---cCCccEEEEcCCHHHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
+||..|+|+|.+++..++.. .++++++.+|||+|||++++++++..+.... ..+.++||++|+++|+.|+++.+.
T Consensus 39 ~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~ 116 (579)
T 3sqw_A 39 MEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 116 (579)
T ss_dssp TTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHH
Confidence 68999999999999988742 3689999999999999999999998887653 124589999999999999999999
Q ss_pred Hhhhh----hCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCc
Q 013778 78 AIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 153 (436)
Q Consensus 78 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~ 153 (436)
.++.. ....+....|+.......... ...+++|+|+||++|...+.......++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l--------------------~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 117 KIHDMNYGLKKYACVSLVGGTDFRAAMNKM--------------------NKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp HHHHHCGGGTTSCEEEECTTSCHHHHHHHH--------------------HHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccccceEEEEEECCccHHHHHHHH--------------------hcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 88642 235566677776554443222 223569999999999998876433467889
Q ss_pred cEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeecccccc
Q 013778 154 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233 (436)
Q Consensus 154 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~ 233 (436)
+++|+||||++.+.+|...+..+...+...... .....+.+++|||+++
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-------------------------------~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADNIKTLLFSATLDD 225 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTCCEEEEEESSCCT
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-------------------------------cccCceEEEEeccCCh
Confidence 999999999999888888888877765432110 0124578999999998
Q ss_pred CchhhhccccCCceeeecCCc---cccCCccccceeeeccC-cCcH----HHHHHHHHh-cCCCcEEEEcCCchhHHHHH
Q 013778 234 DPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICES-KLKP----LYLVALLQS-LGEEKCIVFTSSVESTHRLC 304 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~----~~l~~~l~~-~~~~~~lvf~~~~~~~~~~~ 304 (436)
.........+..+........ .......+......... ..+. ..+...+.. ....++||||++++.++.++
T Consensus 226 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~ 305 (579)
T 3sqw_A 226 KVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLC 305 (579)
T ss_dssp HHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHH
Confidence 777777777776544322211 11111122222222221 1111 122222222 45779999999999999999
Q ss_pred HHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccC
Q 013778 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384 (436)
Q Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 384 (436)
+.|++....+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++..|+|++||+||.
T Consensus 306 ~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 385 (579)
T 3sqw_A 306 SILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 385 (579)
T ss_dssp HHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT
T ss_pred HHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccC
Confidence 99998744458899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecchhHHHHHHHHHHhc
Q 013778 385 GQLGRCFTLLHKDEVKRFKKLLQKAD 410 (436)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (436)
|+.|.+++++.+.+...++.+.+...
T Consensus 386 g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 386 GKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp TCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred CCCceEEEEEcccHHHHHHHHHHHhC
Confidence 99999999999999999888877653
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.8e-49 Score=372.42 Aligned_cols=353 Identities=26% Similarity=0.439 Sum_probs=149.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+..|+|+|.++++.+.. ++++++.+|||+|||++++++++..+.... .++++||++|+++|+.|+.+.+..++
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSV-KAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTC-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccC-CCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 4889999999999998875 789999999999999999999988775542 55689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...++.+....|+.......... .+++|+|+||+.+...+.... ..+.+++++|+||
T Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~vIiDE 170 (394)
T 1fuu_A 114 FHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDE 170 (394)
T ss_dssp TTSCCCEEEECSSCCHHHHHHHH----------------------HHCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEET
T ss_pred ccCCeeEEEEeCCCchHHHHhhc----------------------CCCCEEEECHHHHHHHHHhCC-cchhhCcEEEEEC
Confidence 87788999999887755443221 135899999999999887644 5678899999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++.+.++...+..++..... ..+.+++|||+++.......
T Consensus 171 ah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~ 212 (394)
T 1fuu_A 171 ADEMLSSGFKEQIYQIFTLLPP--------------------------------------TTQVVLLSATMPNDVLEVTT 212 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCT--------------------------------------TCEEEEECSSCCHHHHHHHH
T ss_pred hHHhhCCCcHHHHHHHHHhCCC--------------------------------------CceEEEEEEecCHHHHHHHH
Confidence 9999888777777777665422 23689999999877666666
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013778 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
..+.++..+...............+........+...+..++.....+++||||+++++++.+++.|++.+ ..+..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~ 289 (394)
T 1fuu_A 213 KFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAI 289 (394)
T ss_dssp HHCCSCEEEEECC-------------------------------------------------------------------
T ss_pred HhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC---CeEEEe
Confidence 66666665544333222222222222222233356666677766677899999999999999999998766 789999
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013778 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|+++..|+|++||+||.|++|.+++++.+.+..
T Consensus 290 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 369 (394)
T 1fuu_A 290 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 369 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhhh
Q 013778 401 RFKKLLQKADNDSCPIHSIPSSLIE 425 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (436)
.++.+.+.+... +..++....+
T Consensus 370 ~~~~l~~~~~~~---~~~~~~~~~~ 391 (394)
T 1fuu_A 370 AMRELEKFYSTQ---IEELPSDIAT 391 (394)
T ss_dssp -------------------------
T ss_pred HHHHHHHHhCCc---ccccCcchhh
Confidence 888887665433 3445444433
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.5e-46 Score=369.40 Aligned_cols=357 Identities=28% Similarity=0.416 Sum_probs=274.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc---CCccEEEEcCCHHHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
+||..|+|+|.++++.++.. .++++++.+|||+|||++++++++..+...+. .+.++||++|+++|+.|+++.+.
T Consensus 90 ~g~~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~ 167 (563)
T 3i5x_A 90 MEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 167 (563)
T ss_dssp TCCSSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHH
Confidence 58999999999999988741 36899999999999999999999998877532 23589999999999999999999
Q ss_pred Hhhhhh----CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCc
Q 013778 78 AIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 153 (436)
Q Consensus 78 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~ 153 (436)
.++... +..+....|+.......... ...+++|+|+||++|.+.+.+.....++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 168 KIHDMNYGLKKYACVSLVGGTDFRAAMNKM--------------------NKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp HHHHHCGGGTTSCEEEECTTSCHHHHHHHH--------------------HHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhccccCceeEEEEECCcCHHHHHHHH--------------------hcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 875431 34566677776554443221 233569999999999998876433457889
Q ss_pred cEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeecccccc
Q 013778 154 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233 (436)
Q Consensus 154 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~ 233 (436)
+++|+||||++.+.+|...+..+...+...... ..+..+.+++|||+++
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-------------------------------~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADNIKTLLFSATLDD 276 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTCCEEEEEESSCCT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-------------------------------CccCceEEEEEccCCH
Confidence 999999999999888888888877765432110 0134578999999988
Q ss_pred CchhhhccccCCceeeecCCc---cccCCccccceeeeccC-cCcH----HHHHHHHHh-cCCCcEEEEcCCchhHHHHH
Q 013778 234 DPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICES-KLKP----LYLVALLQS-LGEEKCIVFTSSVESTHRLC 304 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~----~~l~~~l~~-~~~~~~lvf~~~~~~~~~~~ 304 (436)
.........+.++........ .......+......... ..+. ..+...+.. ....++||||++++.++.++
T Consensus 277 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~ 356 (563)
T 3i5x_A 277 KVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLC 356 (563)
T ss_dssp HHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHH
Confidence 777777777666544322111 11111122222222221 1111 122222222 45779999999999999999
Q ss_pred HHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccC
Q 013778 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384 (436)
Q Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 384 (436)
+.|++....+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++..|+||+||+||.
T Consensus 357 ~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 436 (563)
T 3i5x_A 357 SILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 436 (563)
T ss_dssp HHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT
T ss_pred HHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccC
Confidence 99998744458899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecchhHHHHHHHHHHhc
Q 013778 385 GQLGRCFTLLHKDEVKRFKKLLQKAD 410 (436)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (436)
|+.|.+++++.+.+...++.+.+...
T Consensus 437 g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 437 GKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp TCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred CCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999998888877653
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.6e-46 Score=342.45 Aligned_cols=323 Identities=28% Similarity=0.427 Sum_probs=255.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.++++.+.. ++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+.+.+..++
T Consensus 12 ~g~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 6899999999999988774 7899999999999999988887652 4479999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...+..+....|+.......... .+++|+|+||+.|.+.+.... ..+++++++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDE 137 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQINRV----------------------RNADIVVATPGRLLDLWSKGV-IDLSSFEIVIIDE 137 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHHHHH----------------------TTCSEEEECHHHHHHHHHTTS-CCGGGCSEEEEES
T ss_pred hhcCCcEEEEECCcchHHHHhhc----------------------CCCCEEEECHHHHHHHHHcCC-cchhhCcEEEEEC
Confidence 87788888888887655443221 236999999999999877643 5678899999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++.+.++...+..+...... ..+.+++|||+++.......
T Consensus 138 ah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~SAT~~~~~~~~~~ 179 (337)
T 2z0m_A 138 ADLMFEMGFIDDIKIILAQTSN--------------------------------------RKITGLFSATIPEEIRKVVK 179 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHCTT--------------------------------------CSEEEEEESCCCHHHHHHHH
T ss_pred hHHhhccccHHHHHHHHhhCCc--------------------------------------ccEEEEEeCcCCHHHHHHHH
Confidence 9999888777666666654422 23567889999877666666
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013778 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
..+.++..+..... .............. .......+....++++||||+++++++.+++.|+ .+..+
T Consensus 180 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------~~~~~ 246 (337)
T 2z0m_A 180 DFITNYEEIEACIG----LANVEHKFVHVKDD--WRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD-------NAIEL 246 (337)
T ss_dssp HHSCSCEEEECSGG----GGGEEEEEEECSSS--SHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-------TEEEE
T ss_pred HhcCCceeeecccc----cCCceEEEEEeChH--HHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-------hhhhh
Confidence 66555544432211 11111111211211 2223355666778899999999999999998886 46789
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013778 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
||+++..+|.+.++.|++|+.+|||+|+++++|+|+|++++||+++.|+|+..|.|++||+||.|++|.+++++. .+..
T Consensus 247 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~ 325 (337)
T 2z0m_A 247 RGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYW 325 (337)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHH
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7777
Q ss_pred HHHHHHHHh
Q 013778 401 RFKKLLQKA 409 (436)
Q Consensus 401 ~~~~~~~~~ 409 (436)
.++++.+.+
T Consensus 326 ~~~~i~~~~ 334 (337)
T 2z0m_A 326 LEKEVKKVS 334 (337)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHHh
Confidence 777766554
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.4e-48 Score=371.01 Aligned_cols=341 Identities=23% Similarity=0.346 Sum_probs=143.6
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.+++..++.. .++++++.+|||+|||++++++++..+.... .++++||++|+++|+.|+++.+..+.
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-~~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-CCCcEEEEeChHHHHHHHHHHHHHHH
Confidence 68999999999999988752 2489999999999999999999988776543 45589999999999999999998887
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
... +..+....++...... ....++|+|+||+.|.+++.....+.+++++++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 242 (479)
T 3fmp_B 187 KFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (479)
T ss_dssp TTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEEC
T ss_pred hhCCCceEEEEeCCcccccc------------------------ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEE
Confidence 643 4556666655432211 122458999999999999977666778999999999
Q ss_pred hhhHHhh-HhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013778 160 ETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 160 E~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
|+|.+.+ ..+......+..... ...+.+++|||++......
T Consensus 243 Eah~~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~ 284 (479)
T 3fmp_B 243 EADVMIATQGHQDQSIRIQRMLP--------------------------------------RNCQMLLFSATFEDSVWKF 284 (479)
T ss_dssp CHHHHHTSTTHHHHHHHHHTTSC--------------------------------------TTSEEEEEESCCCHHHHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCC--------------------------------------ccceEEEEeCCCCHHHHHH
Confidence 9999876 455555555554432 2347899999998877777
Q ss_pred hccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEE
Q 013778 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (436)
....+.++..+.............+.+........+...+..++.....+++||||++++.++.+++.|.+.+ ..+.
T Consensus 285 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~---~~v~ 361 (479)
T 3fmp_B 285 AQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG---HQVA 361 (479)
T ss_dssp HHHHSSSEEEEEEC------------------------------------------------------------------
T ss_pred HHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCC---ccEE
Confidence 7777777776655443333322222333333345566667777766677899999999999999999998776 8899
Q ss_pred EeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC------ChhHHHHHhhhcccCCCCceEEE
Q 013778 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIHRAGRTARAGQLGRCFT 392 (436)
Q Consensus 319 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~------s~~~~~Q~~GR~~R~~~~g~~~~ 392 (436)
.+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|+||+||+||.|+.|.+++
T Consensus 362 ~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 362 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 999999999999999999999999999999999999999999999999994 56899999999999999999999
Q ss_pred Eecchh-HHHHHHHHHHh
Q 013778 393 LLHKDE-VKRFKKLLQKA 409 (436)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~ 409 (436)
++++.+ ...++.+.+.+
T Consensus 442 ~~~~~~~~~~~~~i~~~~ 459 (479)
T 3fmp_B 442 MVDSKHSMNILNRIQEHF 459 (479)
T ss_dssp ------------------
T ss_pred EEcCcchHHHHHHHHHHh
Confidence 998765 45555554444
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-46 Score=363.29 Aligned_cols=341 Identities=22% Similarity=0.328 Sum_probs=240.5
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+..|+++|.+++..+... .++++++.+|||+|||++++++++..+.... .+.++||++|+++|+.|+.+.+..++
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~-~~~~vLvl~P~~~L~~Q~~~~~~~~~ 213 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASV-PKPQAICLAPSRELARQIMDVVTEMG 213 (508)
T ss_dssp --CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-CSCCEEEECSCHHHHHHHHHHHHHHS
T ss_pred ccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCC-CCceEEEEECcHHHHHHHHHHHHHhC
Confidence 36778999999999988863 2489999999999999999999998876543 45689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...+..+....++..... ...+++|+|+||+++.+.+.... +.++++++||+||
T Consensus 214 ~~~~~~~~~~~~~~~~~~-------------------------~~~~~~Ivv~T~~~l~~~l~~~~-~~~~~~~lIIiDE 267 (508)
T 3fho_A 214 KYTEVKTAFGIKDSVPKG-------------------------AKIDAQIVIGTPGTVMDLMKRRQ-LDARDIKVFVLDE 267 (508)
T ss_dssp TTSSCCEEC-----------------------------------CCCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEECC
T ss_pred CccCeeEEEEeCCccccc-------------------------ccCCCCEEEECHHHHHHHHHcCC-ccccCCCEEEEec
Confidence 766555555444432111 12256999999999999887643 5688999999999
Q ss_pred hhHHhh-HhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013778 161 TDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 161 ~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
||++.+ ..+...+..+...... ..+.+++|||+.+......
T Consensus 268 aH~~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~i~lSAT~~~~~~~~~ 309 (508)
T 3fho_A 268 ADNMLDQQGLGDQSMRIKHLLPR--------------------------------------NTQIVLFSATFSERVEKYA 309 (508)
T ss_dssp HHHHTTC--CHHHHHHHHHHSCT--------------------------------------TCEEEEEESCCSTHHHHHH
T ss_pred hhhhcccCCcHHHHHHHHHhCCc--------------------------------------CCeEEEEeCCCCHHHHHHH
Confidence 999876 4555555555554422 2468999999987777777
Q ss_pred ccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEE
Q 013778 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 319 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (436)
.....++..+...............+........+...+..++.....+++||||+++++++.+++.|.+.+ ..+..
T Consensus 310 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~---~~v~~ 386 (508)
T 3fho_A 310 ERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADG---HTVAC 386 (508)
T ss_dssp HHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTT---CCCCE
T ss_pred HHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCC---CcEEE
Confidence 766666655544333332222223333333445566777777777778899999999999999999998766 88999
Q ss_pred eccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC------CChhHHHHHhhhcccCCCCceEEEE
Q 013778 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 320 ~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.| .++..|+|++||+||.|++|.++++
T Consensus 387 ~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 387 LTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp EC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred EeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred ecch-hHHHHHHHHHHhcC
Q 013778 394 LHKD-EVKRFKKLLQKADN 411 (436)
Q Consensus 394 ~~~~-~~~~~~~~~~~~~~ 411 (436)
+.+. +...++.+.+.+..
T Consensus 467 ~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 467 VHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp ECTTTSSSSHHHHHHHSCC
T ss_pred EeChHHHHHHHHHHHHHCC
Confidence 9854 55666666666543
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3e-45 Score=356.53 Aligned_cols=324 Identities=19% Similarity=0.275 Sum_probs=246.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
|||..|+|+|.++++.++. ++++++.+|||+|||++++++++. ..+++||++|+++|+.|+.+.+..+
T Consensus 40 fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~-------~~g~~lVisP~~~L~~q~~~~l~~~- 107 (591)
T 2v1x_A 40 FKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC-------SDGFTLVICPLISLMEDQLMVLKQL- 107 (591)
T ss_dssp SCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT-------SSSEEEEECSCHHHHHHHHHHHHHH-
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH-------cCCcEEEEeCHHHHHHHHHHHHHhc-
Confidence 7999999999999998875 889999999999999999988874 3458999999999999999999886
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHh---hccCCcEEEeCchhHH------HHhhcCCCcccC
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE---LQSAVDILVATPGRLM------DHINATRGFTLE 151 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Iii~T~~~l~------~~l~~~~~~~~~ 151 (436)
|+.+..+.|+........ .+.. .....+|+++||++|. +.+.. ...+.
T Consensus 108 ---gi~~~~l~~~~~~~~~~~------------------~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~ 164 (591)
T 2v1x_A 108 ---GISATMLNASSSKEHVKW------------------VHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEAR 164 (591)
T ss_dssp ---TCCEEECCSSCCHHHHHH------------------HHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTT
T ss_pred ---CCcEEEEeCCCCHHHHHH------------------HHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhcc
Confidence 788888888886554321 1111 2346799999999874 22222 23467
Q ss_pred CccEEEEehhhHHhhHh--HhhhHHH---HHhhcccccccccccccccccccccccccccccccccccCCCCccceeeee
Q 013778 152 HLCYLVVDETDRLLREA--YQAWLPT---VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 226 (436)
Q Consensus 152 ~~~~iIiDE~h~~~~~~--~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (436)
+++++||||||++..++ |...+.. +... .+..+.++
T Consensus 165 ~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~---------------------------------------~~~~~ii~ 205 (591)
T 2v1x_A 165 RFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ---------------------------------------FPNASLIG 205 (591)
T ss_dssp CEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH---------------------------------------CTTSEEEE
T ss_pred CCcEEEEECcccccccccccHHHHHHHHHHHHh---------------------------------------CCCCcEEE
Confidence 89999999999986553 2222111 1111 13357899
Q ss_pred eccccccCchhhhcc--ccCCceeeecCCccccCCccccceeeeccCc---CcHHHHHHHHHh-cCCCcEEEEcCCchhH
Q 013778 227 LSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQS-LGEEKCIVFTSSVEST 300 (436)
Q Consensus 227 ~sat~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~-~~~~~~lvf~~~~~~~ 300 (436)
+|||+++........ .+..+..+........ ..+....... .+...+.+++.. ..++++||||++++.+
T Consensus 206 lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~n-----l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~ 280 (591)
T 2v1x_A 206 LTATATNHVLTDAQKILCIEKCFTFTASFNRPN-----LYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDS 280 (591)
T ss_dssp EESSCCHHHHHHHHHHTTCCSCEEEECCCCCTT-----EEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHH
T ss_pred EecCCCHHHHHHHHHHhCCCCcEEEecCCCCcc-----cEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHH
Confidence 999998765443332 2333444433222111 1122222222 233445555543 3578999999999999
Q ss_pred HHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhh
Q 013778 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380 (436)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR 380 (436)
+.+++.|++.+ +.+..+|++|+..+|..+++.|.+|+.+|||+|+++++|+|+|++++||+++.|.|+..|+|++||
T Consensus 281 e~la~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GR 357 (591)
T 2v1x_A 281 EQVTVSLQNLG---IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGR 357 (591)
T ss_dssp HHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhcc
Confidence 99999999876 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEecchhHHHHHHHH
Q 013778 381 TARAGQLGRCFTLLHKDEVKRFKKLL 406 (436)
Q Consensus 381 ~~R~~~~g~~~~~~~~~~~~~~~~~~ 406 (436)
+||.|++|.|++++...|...+..++
T Consensus 358 aGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 358 AGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred CCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999998887776654
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.3e-44 Score=348.74 Aligned_cols=330 Identities=21% Similarity=0.304 Sum_probs=251.7
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
||+..|+|+|.++++.++. ++++++.+|||+|||++++++++. ...++||++|+++|+.|+.+.+..+
T Consensus 21 ~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~-------~~g~~lvi~P~~aL~~q~~~~l~~~- 88 (523)
T 1oyw_A 21 FGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL-------LNGLTVVVSPLISLMKDQVDQLQAN- 88 (523)
T ss_dssp TCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH-------SSSEEEEECSCHHHHHHHHHHHHHT-
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHH-------hCCCEEEECChHHHHHHHHHHHHHc-
Confidence 7999999999999998875 789999999999999999888773 2347999999999999999998876
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
|+.+..+.++.......... .......++|+++||++|...... ..+...+++++||||
T Consensus 89 ---gi~~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDE 147 (523)
T 1oyw_A 89 ---GVAAACLNSTQTREQQLEVM-----------------TGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDE 147 (523)
T ss_dssp ---TCCEEEECTTSCHHHHHHHH-----------------HHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESS
T ss_pred ---CCcEEEEeCCCCHHHHHHHH-----------------HHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeC
Confidence 77888888877654432111 111234579999999999532111 012346899999999
Q ss_pred hhHHhhHh--HhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh-
Q 013778 161 TDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK- 237 (436)
Q Consensus 161 ~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~- 237 (436)
||++.+++ |......+...... .+..+.+++|||+.+....
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~i~lSAT~~~~~~~~ 191 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLPFMALTATADDTTRQD 191 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHH------------------------------------CTTSCEEEEESCCCHHHHHH
T ss_pred ccccCcCCCccHHHHHHHHHHHHh------------------------------------CCCCCEEEEeCCCCHHHHHH
Confidence 99986543 22222211111100 0234679999999875433
Q ss_pred -hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013778 238 -LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
.....+.++........... ..........+...+...+....++++||||++++.++.+++.|++.+ ..
T Consensus 192 i~~~l~~~~~~~~~~~~~r~~------l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g---~~ 262 (523)
T 1oyw_A 192 IVRLLGLNDPLIQISSFDRPN------IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKG---IS 262 (523)
T ss_dssp HHHHHTCCSCEEEECCCCCTT------EEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTT---CC
T ss_pred HHHHhCCCCCeEEeCCCCCCc------eEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCC---CC
Confidence 22234455555443332211 112222335566778888887778899999999999999999999876 88
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecc
Q 013778 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 396 (436)
+..+|++++..+|..+++.|.+|+.+|||||+++++|+|+|++++||+++.|.|+..|.|++||+||.|.+|.+++++++
T Consensus 263 ~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~ 342 (523)
T 1oyw_A 263 AAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDP 342 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECH
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH
Q 013778 397 DEVKRFKKLLQK 408 (436)
Q Consensus 397 ~~~~~~~~~~~~ 408 (436)
.|...++.++..
T Consensus 343 ~d~~~~~~~~~~ 354 (523)
T 1oyw_A 343 ADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 888877777654
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.5e-43 Score=334.88 Aligned_cols=331 Identities=19% Similarity=0.267 Sum_probs=236.0
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013778 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
|+ .|+|+|.++++.++. ++++++.+|||+|||++++++++... ..+++++|++|+++|+.|+++.+..++.
T Consensus 19 ~~-~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 19 GK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA----RKGKKSALVFPTVTLVKQTLERLQKLAD 89 (414)
T ss_dssp SS-CCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH----TTTCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred CC-CCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh----cCCCEEEEEECCHHHHHHHHHHHHHHcc
Confidence 56 699999999988764 78999999999999998877777654 2456899999999999999999999877
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
.++.+..++|+.+...... .+..+.. .++|+|+||++|.+.+.. +.+.+++++|+||
T Consensus 90 -~~~~v~~~~g~~~~~~~~~------------------~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDE 147 (414)
T 3oiy_A 90 -EKVKIFGFYSSMKKEEKEK------------------FEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDD 147 (414)
T ss_dssp -SSCCEEECCTTSCHHHHHH------------------HHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESC
T ss_pred -CCceEEEEECCCChhhHHH------------------HHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeC
Confidence 6889999999987643311 1122333 379999999999888765 5577899999999
Q ss_pred hhHHhhH-----------hHhhh-HHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeec
Q 013778 161 TDRLLRE-----------AYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 228 (436)
Q Consensus 161 ~h~~~~~-----------~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 228 (436)
||++..+ +|... +..++..++.... .......+..+.+++|
T Consensus 148 aH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~---------------------------~~~l~~~~~~~~i~~S 200 (414)
T 3oiy_A 148 VDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI---------------------------YERPKNLKPGILVVSS 200 (414)
T ss_dssp HHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC---------------------------CCCCTTCCCCEEEESS
T ss_pred hHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh---------------------------hhhcccCCCceEEEEe
Confidence 9987642 22222 4444444321000 0000001345789999
Q ss_pred ccccc-CchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHH
Q 013778 229 ATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307 (436)
Q Consensus 229 at~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l 307 (436)
||+.+ ............ +...... .....+..... ...+...+..+++. .++++||||++++.++.+++.|
T Consensus 201 AT~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~i~~~~~---~~~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L 272 (414)
T 3oiy_A 201 ATAKPRGIRPLLFRDLLN---FTVGRLV-SVARNITHVRI---SSRSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYL 272 (414)
T ss_dssp CCSSCCSSTTHHHHHHHS---CCSSCCC-CCCCSEEEEEE---SSCCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHhhc---cCcCccc-cccccchheee---ccCHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHH
Confidence 99433 332221111111 1111111 11111121211 22566777777777 3589999999999999999999
Q ss_pred hhhcccceeEE-EeccccchHHHHHHHHHHhcCCeeEEEe----cCCcccccCCCC-CCeEEEecCC--CChhHHHHHhh
Q 013778 308 NHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKP--AYIKTYIHRAG 379 (436)
Q Consensus 308 ~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~----t~~~~~Gidi~~-~~~vi~~~~~--~s~~~~~Q~~G 379 (436)
++.+ +.+. .+||. +|. ++.|++|+.+|||| |+++++|+|+|+ +++||+++.| .++..|+||+|
T Consensus 273 ~~~~---~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~G 343 (414)
T 3oiy_A 273 KRFK---FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASG 343 (414)
T ss_dssp HHTT---CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHG
T ss_pred HHcC---CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhC
Confidence 9876 7787 88874 344 99999999999999 999999999999 9999999999 99999999999
Q ss_pred hcccCC----CCceEEEEecchhHHHHHHHHHHh
Q 013778 380 RTARAG----QLGRCFTLLHKDEVKRFKKLLQKA 409 (436)
Q Consensus 380 R~~R~~----~~g~~~~~~~~~~~~~~~~~~~~~ 409 (436)
|+||.| ..|.+++++ .+...+..+.+.+
T Consensus 344 R~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 344 RSSRILNGVLVKGVSVIFE--EDEEIFESLKTRL 375 (414)
T ss_dssp GGCCEETTEECCEEEEEEC--CCHHHHHHHHHHH
T ss_pred ccccCCCCCCcceEEEEEE--ccHHHHHHHHHHh
Confidence 999987 479999998 4444444444444
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.4e-42 Score=335.61 Aligned_cols=338 Identities=19% Similarity=0.188 Sum_probs=194.5
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc-CCccEEEEcCCHHHHHHHHHHHHHh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
|+..+|+|+|.++++.++. ++++++.+|||+|||++++++++..+..... .+.++||++|+++|+.||.+.+..+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4556899999999998875 7899999999999999999999888766421 1668999999999999999999999
Q ss_pred hhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
+...++.+..++|+........ ....+++|+|+||++|.+.+.......+++++++|+|
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp HGGGTCCEEECCCC-----CHH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred hcccCceEEEEeCCCCcchhHH---------------------HhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 9888899999999885443322 1223469999999999999887553368899999999
Q ss_pred hhhHHhhHhHhhhH-HHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch--
Q 013778 160 ETDRLLREAYQAWL-PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-- 236 (436)
Q Consensus 160 E~h~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~-- 236 (436)
|||++.+.+....+ ..+....... ..+..+.+++|||+.....
T Consensus 138 Eah~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~l~lSAT~~~~~~~~ 183 (556)
T 4a2p_A 138 ECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAKN 183 (556)
T ss_dssp TGGGCSTTSHHHHHHHHHHHHHHCC-------------------------------------CCEEEEEESCCCCTTCSS
T ss_pred CCcccCCcchHHHHHHHHHHhhhcc----------------------------------cCCCCeEEEEeCCcccCchhh
Confidence 99998766443222 1222111000 0123478999999953210
Q ss_pred --hhh-------c------------------cccCCceeeecCCccccCCc-----------------------------
Q 013778 237 --KLA-------Q------------------LDLHHPLFLTTGETRYKLPE----------------------------- 260 (436)
Q Consensus 237 --~~~-------~------------------~~~~~~~~~~~~~~~~~~~~----------------------------- 260 (436)
.+. . .....+..............
T Consensus 184 ~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (556)
T 4a2p_A 184 IEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNS 263 (556)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 000 0 00001110000000000000
Q ss_pred -----------cccc-----------------------------------------------------------------
Q 013778 261 -----------RLES----------------------------------------------------------------- 264 (436)
Q Consensus 261 -----------~~~~----------------------------------------------------------------- 264 (436)
+...
T Consensus 264 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 343 (556)
T 4a2p_A 264 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 343 (556)
T ss_dssp -CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 0000
Q ss_pred --------------------eeeeccCcCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhhcc--------
Q 013778 265 --------------------YKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE-------- 312 (436)
Q Consensus 265 --------------------~~~~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~~~~~l~~~~~-------- 312 (436)
.........|...+.+++.. ..+.++||||+++..++.+++.|++.+.
T Consensus 344 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~ 423 (556)
T 4a2p_A 344 ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGV 423 (556)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC
T ss_pred HHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeE
Confidence 00000013355555555543 4578999999999999999999987521
Q ss_pred -cceeEEEeccccchHHHHHHHHHHhc-CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceE
Q 013778 313 -LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390 (436)
Q Consensus 313 -~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~ 390 (436)
.+.....+||+|+..+|..++++|++ |+++|||||+++++|+|+|++++||+++.|+|+..|+||+|| ||. ++|.+
T Consensus 424 ~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~ 501 (556)
T 4a2p_A 424 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKC 501 (556)
T ss_dssp ------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCE
T ss_pred EEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceE
Confidence 12445566788999999999999999 999999999999999999999999999999999999999999 998 68999
Q ss_pred EEEecchhH
Q 013778 391 FTLLHKDEV 399 (436)
Q Consensus 391 ~~~~~~~~~ 399 (436)
++++...+.
T Consensus 502 ~~l~~~~~~ 510 (556)
T 4a2p_A 502 ILVTSKTEV 510 (556)
T ss_dssp EEEESCHHH
T ss_pred EEEEeCcch
Confidence 999988765
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.2e-41 Score=341.04 Aligned_cols=341 Identities=18% Similarity=0.165 Sum_probs=206.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc-CCccEEEEcCCHHHHHHHHHHHHHh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
||+..|++||.++++.++. ++++++++|||+|||++++++++..+...+. .+.++||++|+++|+.||.+.+..+
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp TC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 6899999999999998775 7899999999999999999999987765421 2268999999999999999999999
Q ss_pred hhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
+...++.+..++|+........ ....+++|+|+||+.|.+.+.......+++++++|+|
T Consensus 85 ~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViD 143 (696)
T 2ykg_A 85 FERHGYRVTGISGATAENVPVE---------------------QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 143 (696)
T ss_dssp TTTTTCCEEEECSSSCSSSCHH---------------------HHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEE
T ss_pred hccCCceEEEEeCCccccccHH---------------------HhccCCCEEEECHHHHHHHHhcCcccccccccEEEEe
Confidence 8877899999998875433221 2223569999999999999887543368899999999
Q ss_pred hhhHHhhHhHhh-hHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCc---
Q 013778 160 ETDRLLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--- 235 (436)
Q Consensus 160 E~h~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~--- 235 (436)
|||++.....+. .+...+..... ....+..+.+++|||+....
T Consensus 144 EaH~~~~~~~~~~i~~~~l~~~~~---------------------------------~~~~~~~~il~LTATp~~~~~~~ 190 (696)
T 2ykg_A 144 ECHNTSKQHPYNMIMFNYLDQKLG---------------------------------GSSGPLPQVIGLTASVGVGDAKT 190 (696)
T ss_dssp TGGGCSTTCHHHHHHHHHHHHHHT---------------------------------TCCSCCCEEEEEESCCCCSSCCS
T ss_pred CCCcccCcccHHHHHHHHHHHhhc---------------------------------ccCCCCCeEEEEeCccccCcccc
Confidence 999976543222 12112221100 00002235566666664110
Q ss_pred ---------------------------------------------------------------hhhhccccCCceeeecC
Q 013778 236 ---------------------------------------------------------------NKLAQLDLHHPLFLTTG 252 (436)
Q Consensus 236 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 252 (436)
..+....+.++..+...
T Consensus 191 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~ 270 (696)
T 2ykg_A 191 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 270 (696)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSC
T ss_pred HHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00000000000000000
Q ss_pred Cccc-------------------------------------------------------------------------cCC
Q 013778 253 ETRY-------------------------------------------------------------------------KLP 259 (436)
Q Consensus 253 ~~~~-------------------------------------------------------------------------~~~ 259 (436)
.... ...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 350 (696)
T 2ykg_A 271 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 350 (696)
T ss_dssp CSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhccc
Confidence 0000 000
Q ss_pred ccccceee----------------eccCcCcHHHHHHHHHhc----CCCcEEEEcCCchhHHHHHHHHhhhcc-cceeEE
Q 013778 260 ERLESYKL----------------ICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIK 318 (436)
Q Consensus 260 ~~~~~~~~----------------~~~~~~~~~~l~~~l~~~----~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~ 318 (436)
........ ......+...+..++... +++++||||++++.++.+++.|++.+. ..+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~ 430 (696)
T 2ykg_A 351 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 430 (696)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEE
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCcccccee
Confidence 00000000 001334666677776654 577999999999999999999998642 124556
Q ss_pred Ee--------ccccchHHHHHHHHHHhc-CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCce
Q 013778 319 EY--------SGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389 (436)
Q Consensus 319 ~~--------~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~ 389 (436)
.+ |++|+..+|.++++.|++ |+.+|||+|+++++|+|+|++++||+++.|+++..|+||+|| ||. +.|.
T Consensus 431 ~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~ 508 (696)
T 2ykg_A 431 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSK 508 (696)
T ss_dssp C-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCE
T ss_pred EEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCce
Confidence 66 569999999999999998 999999999999999999999999999999999999999999 998 6899
Q ss_pred EEEEecchhHHH
Q 013778 390 CFTLLHKDEVKR 401 (436)
Q Consensus 390 ~~~~~~~~~~~~ 401 (436)
+++++...+...
T Consensus 509 ~~~l~~~~~~~~ 520 (696)
T 2ykg_A 509 CFLLTSNAGVIE 520 (696)
T ss_dssp EEEEESCHHHHH
T ss_pred EEEEecCCCHHH
Confidence 999998876633
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6e-41 Score=329.86 Aligned_cols=337 Identities=18% Similarity=0.192 Sum_probs=219.4
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-cCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
+|+|+|.++++.++. ++++++.+|||+|||++++++++..+.... ..+.++||++|+++|+.||.+.+..++...
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 699999999998874 789999999999999999999988876642 116689999999999999999999999888
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013778 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
++.+..++|+........ ....+++|+|+||++|.+.+.......+.+++++|+||||+
T Consensus 80 ~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQ---------------------HIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp TCCEEEECTTTGGGSCHH---------------------HHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred CcEEEEEcCCCcchhhHH---------------------HHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 899999999986443322 22234699999999999998875533688999999999999
Q ss_pred HhhHhHh-hhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCc-------
Q 013778 164 LLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP------- 235 (436)
Q Consensus 164 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~------- 235 (436)
+.+.+.. ..+..+...... ....+..+.+++|||+....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~lSAT~~~~~~~~~~~~ 185 (555)
T 3tbk_A 139 TSKNHPYNQIMFRYLDHKLG---------------------------------ESRDPLPQVVGLTASVGVGDAKTAEEA 185 (555)
T ss_dssp CSTTCHHHHHHHHHHHHHTS---------------------------------SCCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred cCCcchHHHHHHHHHHhhhc---------------------------------cccCCCCeEEEEecCcccCccccHHHH
Confidence 8766322 222222222110 00013347899999995431
Q ss_pred -hhh---hc------------------cccCCceeeecCCccccCC--------------------------------c-
Q 013778 236 -NKL---AQ------------------LDLHHPLFLTTGETRYKLP--------------------------------E- 260 (436)
Q Consensus 236 -~~~---~~------------------~~~~~~~~~~~~~~~~~~~--------------------------------~- 260 (436)
..+ .. .....+............. .
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (555)
T 3tbk_A 186 MQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNRE 265 (555)
T ss_dssp HHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCC
T ss_pred HHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 000 00 0000110000000000000 0
Q ss_pred --------cccc------------------------------------------------------e-------------
Q 013778 261 --------RLES------------------------------------------------------Y------------- 265 (436)
Q Consensus 261 --------~~~~------------------------------------------------------~------------- 265 (436)
.... +
T Consensus 266 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (555)
T 3tbk_A 266 FGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETE 345 (555)
T ss_dssp SSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HH
T ss_pred ccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHH
Confidence 0000 0
Q ss_pred ------------------eeeccCcCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhhcc---------cc
Q 013778 266 ------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LR 314 (436)
Q Consensus 266 ------------------~~~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~~~~~l~~~~~---------~~ 314 (436)
........|...+.+++.. .+.+++||||++++.++.+++.|++.+. .+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g 425 (555)
T 3tbk_A 346 RELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTG 425 (555)
T ss_dssp HHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC
T ss_pred HHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEe
Confidence 0000113345555555544 3568999999999999999999987642 12
Q ss_pred eeEEEeccccchHHHHHHHHHHhc-CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013778 315 IKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 315 ~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
.....+||+|+..+|.++++.|++ |+++|||||+++++|+|+|++++||+++.|+|+..|+||+|| ||. +.|.++++
T Consensus 426 ~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l 503 (555)
T 3tbk_A 426 RGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLL 503 (555)
T ss_dssp --------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEE
T ss_pred cCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEE
Confidence 344555679999999999999999 999999999999999999999999999999999999999999 898 78999999
Q ss_pred ecchhHHH
Q 013778 394 LHKDEVKR 401 (436)
Q Consensus 394 ~~~~~~~~ 401 (436)
+.+.+...
T Consensus 504 ~~~~~~~~ 511 (555)
T 3tbk_A 504 TSSADVIE 511 (555)
T ss_dssp ESCHHHHH
T ss_pred EcCCCHHH
Confidence 98876543
No 22
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.9e-40 Score=319.28 Aligned_cols=323 Identities=24% Similarity=0.298 Sum_probs=234.0
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|+|||.+++..+.. + ++++.+|||+|||++++.++...+.. .+.++||++|+++|+.||.+.+..++...+
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 689999999998875 3 99999999999999998888877652 556899999999999999999999874334
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013778 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
..+..++|+........ ...+++|+|+||+.+.+.+.... +.+.++++||+||||++
T Consensus 81 ~~v~~~~g~~~~~~~~~----------------------~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK----------------------AWARAKVIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp GGEEEECSCSCHHHHHH----------------------HHHHCSEEEECHHHHHHHHHTTS-CCTTSCSEEEEETGGGC
T ss_pred hheEEeeCCcchhhhhh----------------------hccCCCEEEecHHHHHHHHhcCC-cchhhceEEEEECCccc
Confidence 47888888876544321 11235999999999999887643 56888999999999998
Q ss_pred hhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhcc---
Q 013778 165 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--- 241 (436)
Q Consensus 165 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~--- 241 (436)
.+......+...+.... +..+.+++|||+..........
T Consensus 138 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~l~lTaTp~~~~~~~~~l~~~ 179 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQA--------------------------------------KNPLVIGLTASPGSTPEKIMEVINN 179 (494)
T ss_dssp STTCHHHHHHHHHHHHC--------------------------------------SSCCEEEEESCSCSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhcC--------------------------------------CCCeEEEEecCCCCCcHHHHHHHHh
Confidence 65433333322222211 1235789999987432221110
Q ss_pred c-cCCceeeecCCc---c-----------ccCCccc--------------------------------------------
Q 013778 242 D-LHHPLFLTTGET---R-----------YKLPERL-------------------------------------------- 262 (436)
Q Consensus 242 ~-~~~~~~~~~~~~---~-----------~~~~~~~-------------------------------------------- 262 (436)
. ...+........ . ...+...
T Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
T 1wp9_A 180 LGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIIN 259 (494)
T ss_dssp TTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHH
T ss_pred cChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHH
Confidence 0 000000000000 0 0000000
Q ss_pred --------cce-----------------------------------------------------------------eeec
Q 013778 263 --------ESY-----------------------------------------------------------------KLIC 269 (436)
Q Consensus 263 --------~~~-----------------------------------------------------------------~~~~ 269 (436)
..+ ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (494)
T 1wp9_A 260 EEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 339 (494)
T ss_dssp HHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 000 0000
Q ss_pred cCcCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEecc--------ccchHHHHHHHHHHh
Q 013778 270 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFR 337 (436)
Q Consensus 270 ~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~r~~~~~~f~ 337 (436)
....|...+.+++.. ..+.++||||++++.++.+++.|++.+ +.+..+|| +++..+|.++++.|+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 416 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFA 416 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT---CCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHh
Confidence 233355666666665 468899999999999999999999876 88999999 999999999999999
Q ss_pred cCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013778 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 338 ~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
+|+.+|||+|+++++|+|+|++++||+++.|+++..|.|++||+||.|+ |.++.++.....+
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999987 9999999887543
No 23
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=8.8e-41 Score=339.37 Aligned_cols=338 Identities=19% Similarity=0.194 Sum_probs=201.5
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc-CCccEEEEcCCHHHHHHHHHHHHHh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
||+..|+|+|.+++..+.. ++++++++|||+|||++++++++..+..... .+.++||++|+++|+.||.+.+..+
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 5788999999999998864 7899999999999999999999888766421 1668999999999999999999999
Q ss_pred hhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
+...++.+..++|+....... .....+++|+|+||++|.+.+.......++++++||+|
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~---------------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 378 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSV---------------------EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 378 (797)
T ss_dssp HGGGTCCEEEECCC-----CH---------------------HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEET
T ss_pred cccCCceEEEEeCCcchhhhH---------------------HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEE
Confidence 988889999999988544332 12234569999999999999886553368899999999
Q ss_pred hhhHHhhHhHhhh-HHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCc---
Q 013778 160 ETDRLLREAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--- 235 (436)
Q Consensus 160 E~h~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~--- 235 (436)
|||++........ +..+....... ..+..+.+++|||+....
T Consensus 379 EaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~lSATp~~~~~~~ 424 (797)
T 4a2q_A 379 ECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAKN 424 (797)
T ss_dssp TGGGCSTTSHHHHHHHHHHHHHHTT----------------------------------CCCCCEEEEEESCCCCTTCCS
T ss_pred CccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCCCeEEEEcCCcccccccc
Confidence 9999876533222 22222211100 013346889999985321
Q ss_pred -----h---hhh------------------ccccCCceeeecCCcccc------------------------------C-
Q 013778 236 -----N---KLA------------------QLDLHHPLFLTTGETRYK------------------------------L- 258 (436)
Q Consensus 236 -----~---~~~------------------~~~~~~~~~~~~~~~~~~------------------------------~- 258 (436)
. .+. ...+..+........... .
T Consensus 425 ~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~ 504 (797)
T 4a2q_A 425 IEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNS 504 (797)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhc
Confidence 0 000 000011110000000000 0
Q ss_pred Cc---------cccc-----------------------------------------------------------------
Q 013778 259 PE---------RLES----------------------------------------------------------------- 264 (436)
Q Consensus 259 ~~---------~~~~----------------------------------------------------------------- 264 (436)
.. +...
T Consensus 505 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 584 (797)
T 4a2q_A 505 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 584 (797)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCcc
Confidence 00 0000
Q ss_pred --------------------eeeeccCcCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhhcc--------
Q 013778 265 --------------------YKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE-------- 312 (436)
Q Consensus 265 --------------------~~~~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~~~~~l~~~~~-------- 312 (436)
.........|...+..++.. ..+.++||||+++..++.+++.|++.+.
T Consensus 585 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~ 664 (797)
T 4a2q_A 585 ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGV 664 (797)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceE
Confidence 00000013355555665554 4678999999999999999999987421
Q ss_pred -cceeEEEeccccchHHHHHHHHHHhc-CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceE
Q 013778 313 -LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 390 (436)
Q Consensus 313 -~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~ 390 (436)
.+.....+||+|+..+|..++++|++ |+++|||||+++++|+|+|++++||+++.|+|+..|+||+|| ||. ++|.+
T Consensus 665 l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~ 742 (797)
T 4a2q_A 665 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKC 742 (797)
T ss_dssp C----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCE
T ss_pred EEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceE
Confidence 12456667889999999999999999 999999999999999999999999999999999999999999 998 78999
Q ss_pred EEEecchhH
Q 013778 391 FTLLHKDEV 399 (436)
Q Consensus 391 ~~~~~~~~~ 399 (436)
++++...+.
T Consensus 743 i~l~~~~~~ 751 (797)
T 4a2q_A 743 ILVTSKTEV 751 (797)
T ss_dssp EEEECCHHH
T ss_pred EEEEeCCcH
Confidence 999988654
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.9e-40 Score=329.99 Aligned_cols=322 Identities=22% Similarity=0.292 Sum_probs=233.8
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.+++..++. .++++++++|||+|||.++.+++++.+.. .+.+++|++|+++|+.|+++.++.+
T Consensus 26 ~g~~~l~~~Q~~~i~~~~~---~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~il~i~P~r~La~q~~~~~~~~- 98 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKGLL---EGNRLLLTSPTGSGKTLIAEMGIISFLLK---NGGKAIYVTPLRALTNEKYLTFKDW- 98 (715)
T ss_dssp TSCCBCCHHHHHHHHTTTT---TTCCEEEECCTTSCHHHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHHHHHGGG-
T ss_pred CCCCCCCHHHHHHHHHHhc---CCCcEEEEcCCCCcHHHHHHHHHHHHHHH---CCCeEEEEeCcHHHHHHHHHHHHHh-
Confidence 5899999999999886433 58999999999999999999999887654 3458999999999999999999544
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...|+.+...+|+....... ..+++|+|+||++|..++.... ..++++++||+||
T Consensus 99 ~~~g~~v~~~~G~~~~~~~~------------------------~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE 153 (715)
T 2va8_A 99 ELIGFKVAMTSGDYDTDDAW------------------------LKNYDIIITTYEKLDSLWRHRP-EWLNEVNYFVLDE 153 (715)
T ss_dssp GGGTCCEEECCSCSSSCCGG------------------------GGGCSEEEECHHHHHHHHHHCC-GGGGGEEEEEECS
T ss_pred hcCCCEEEEEeCCCCCchhh------------------------cCCCCEEEEcHHHHHHHHhCCh-hHhhccCEEEEec
Confidence 44588999999886543321 1245999999999999887743 4578999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
+|.+.+..+...++.+...++ ..+.+++|||+.+. ..+..
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~---------------------------------------~~~ii~lSATl~n~-~~~~~ 193 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK---------------------------------------RRNLLALSATISNY-KQIAK 193 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH---------------------------------------TSEEEEEESCCTTH-HHHHH
T ss_pred hhhcCCcccchHHHHHHHhcc---------------------------------------cCcEEEEcCCCCCH-HHHHH
Confidence 999876666777777776553 23789999999642 22222
Q ss_pred cccCCceeeecCCccccCCccc-------cceeeec---------cCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHH
Q 013778 241 LDLHHPLFLTTGETRYKLPERL-------ESYKLIC---------ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 304 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~ 304 (436)
++..+.+ ....+..+..... ..+.... ........+.+.+. .++++||||+++++++.++
T Consensus 194 -~l~~~~~-~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a 269 (715)
T 2va8_A 194 -WLGAEPV-ATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTA 269 (715)
T ss_dssp -HHTCEEE-ECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHH
T ss_pred -HhCCCcc-CCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHH
Confidence 1111111 1110000000000 0000000 01222233333332 4689999999999999999
Q ss_pred HHHhhhccc---------------------------------ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcc
Q 013778 305 TLLNHFGEL---------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351 (436)
Q Consensus 305 ~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~ 351 (436)
+.|.+.... ...+..+|++++..+|..+++.|++|..+|||||++++
T Consensus 270 ~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~ 349 (715)
T 2va8_A 270 LKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLA 349 (715)
T ss_dssp HHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGG
T ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHh
Confidence 999864211 12589999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEE----ec-------CCCChhHHHHHhhhcccCCC--CceEEEEecchh
Q 013778 352 RGMDVEGVNNVVN----YD-------KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDE 398 (436)
Q Consensus 352 ~Gidi~~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~ 398 (436)
+|+|+|++++||. |+ .|.|..+|.||+||+||.|. .|.|+++++..+
T Consensus 350 ~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 350 AGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp GSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred cccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999999999998 88 78899999999999999874 589999998765
No 25
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-40 Score=332.42 Aligned_cols=325 Identities=24% Similarity=0.305 Sum_probs=236.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||++|+|+|.++++.+. .++++++++|||+|||.++.+++++.+.. +.+++|++|+++|+.|+++.++.+
T Consensus 21 ~g~~~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La~q~~~~~~~~- 91 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALAGEKYESFKKW- 91 (702)
T ss_dssp C---CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHTTT-
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHHHHHHHHHHHH-
Confidence 588999999999998855 48999999999999999999998877653 458999999999999999999644
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...|+.+...+|+...... ...+++|+|+||+++..++.+.. ..+++++++|+||
T Consensus 92 ~~~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~l~~~~-~~l~~~~~vIiDE 146 (702)
T 2p6r_A 92 EKIGLRIGISTGDYESRDE------------------------HLGDCDIIVTTSEKADSLIRNRA-SWIKAVSCLVVDE 146 (702)
T ss_dssp TTTTCCEEEECSSCBCCSS------------------------CSTTCSEEEEEHHHHHHHHHTTC-SGGGGCCEEEETT
T ss_pred HhcCCEEEEEeCCCCcchh------------------------hccCCCEEEECHHHHHHHHHcCh-hHHhhcCEEEEee
Confidence 3448899999988654321 01256999999999999888743 4478999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
+|.+.+......++.++..+.... +..+.+++|||+.+ ...+..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~-----------------------------------~~~~ii~lSATl~n-~~~~~~ 190 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMN-----------------------------------KALRVIGLSATAPN-VTEIAE 190 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHC-----------------------------------TTCEEEEEECCCTT-HHHHHH
T ss_pred eeecCCCCcccHHHHHHHHHHhcC-----------------------------------cCceEEEECCCcCC-HHHHHH
Confidence 999877666666777766553210 23578999999874 222222
Q ss_pred cccCCceeeecCCccccCCccc--c-ceeeecc------CcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhc
Q 013778 241 LDLHHPLFLTTGETRYKLPERL--E-SYKLICE------SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~------~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~ 311 (436)
++..+.+ ....+..+..... . ....... .......+.+.+. .++++||||++++.++.++..|.+..
T Consensus 191 -~l~~~~~-~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~ 266 (702)
T 2p6r_A 191 -WLDADYY-VSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAIT 266 (702)
T ss_dssp -HTTCEEE-ECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred -HhCCCcc-cCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHH
Confidence 2222111 1111110000000 0 0000110 0113344444443 47899999999999999999987531
Q ss_pred cc---------------------------ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEE
Q 013778 312 EL---------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 364 (436)
Q Consensus 312 ~~---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~ 364 (436)
.. ...+..+|++++..+|..+++.|++|+.+|||||+++++|+|+|++++||.
T Consensus 267 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 267 AKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVR 346 (702)
T ss_dssp HTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEEC
T ss_pred HhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEc
Confidence 00 135788999999999999999999999999999999999999999999998
Q ss_pred ----ec---CCCChhHHHHHhhhcccCCC--CceEEEEecchhH
Q 013778 365 ----YD---KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEV 399 (436)
Q Consensus 365 ----~~---~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~ 399 (436)
|+ .|.|..+|.||+||+||.|. .|.|+++++..+.
T Consensus 347 ~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 347 SLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp CSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred CceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 55 68899999999999999884 5899999988773
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5e-40 Score=330.77 Aligned_cols=324 Identities=21% Similarity=0.254 Sum_probs=239.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.+++..++ ..++++++++|||+|||.++.+++++.+... +.+++|++|+++|+.|+++.++.+.
T Consensus 19 ~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~l~ 92 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGI---LEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQDWE 92 (720)
T ss_dssp TTCCBCCHHHHHHHTTTG---GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGGGG
T ss_pred CCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHHHH
Confidence 589999999998887633 2489999999999999999999998877642 4589999999999999999996543
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
..|+.+...+|+....... ..+++|+|+||+++..++.... ..++++++||+||
T Consensus 93 -~~g~~v~~~~G~~~~~~~~------------------------~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE 146 (720)
T 2zj8_A 93 -KIGLRVAMATGDYDSKDEW------------------------LGKYDIIIATAEKFDSLLRHGS-SWIKDVKILVADE 146 (720)
T ss_dssp -GGTCCEEEECSCSSCCCGG------------------------GGGCSEEEECHHHHHHHHHHTC-TTGGGEEEEEEET
T ss_pred -hcCCEEEEecCCCCccccc------------------------cCCCCEEEECHHHHHHHHHcCh-hhhhcCCEEEEEC
Confidence 3488999999876533221 1245999999999988887643 4478999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
+|.+.+......++.++..+.. ..+.+++|||+.+. ..+..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~--------------------------------------~~~ii~lSATl~n~-~~~~~ 187 (720)
T 2zj8_A 147 IHLIGSRDRGATLEVILAHMLG--------------------------------------KAQIIGLSATIGNP-EELAE 187 (720)
T ss_dssp GGGGGCTTTHHHHHHHHHHHBT--------------------------------------TBEEEEEECCCSCH-HHHHH
T ss_pred CcccCCCcccHHHHHHHHHhhc--------------------------------------CCeEEEEcCCcCCH-HHHHH
Confidence 9998776777777777776541 23789999998642 22221
Q ss_pred cccCCceeeecCCccccCCcc--ccc-eeeec----cCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccc
Q 013778 241 LDLHHPLFLTTGETRYKLPER--LES-YKLIC----ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~----~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~ 313 (436)
++.... +....+..+.... ... ..... ........+.+.+. .++++||||++++.++.++..|.+....
T Consensus 188 -~l~~~~-~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~ 263 (720)
T 2zj8_A 188 -WLNAEL-IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKS 263 (720)
T ss_dssp -HTTEEE-EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGG
T ss_pred -HhCCcc-cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHH
Confidence 111111 1111000000000 000 00000 02334445555444 3689999999999999999999764211
Q ss_pred ------------------------------ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEE
Q 013778 314 ------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363 (436)
Q Consensus 314 ------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi 363 (436)
..++..+|++++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 264 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI 343 (720)
T 2zj8_A 264 LLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVII 343 (720)
T ss_dssp GSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEE
T ss_pred hcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEE
Confidence 12489999999999999999999999999999999999999999999998
Q ss_pred E----ec----CCCChhHHHHHhhhcccCCC--CceEEEEecchhH
Q 013778 364 N----YD----KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEV 399 (436)
Q Consensus 364 ~----~~----~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~ 399 (436)
. |+ .|.|..+|.||+||+||.|. .|.|++++...+.
T Consensus 344 ~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 344 RDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp CCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCH
T ss_pred cCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccH
Confidence 8 55 57899999999999999884 5899999988773
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-40 Score=337.99 Aligned_cols=325 Identities=19% Similarity=0.189 Sum_probs=236.4
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
-.|+|+|.+++..+. .++++++++|||+|||+++.++++..+. .+.+++|++|+++|+.|+++.+...+.
T Consensus 183 f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~----~g~rvlvl~PtraLa~Q~~~~l~~~~~-- 252 (1108)
T 3l9o_A 183 FTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLK----NKQRVIYTSPIKALSNQKYRELLAEFG-- 252 (1108)
T ss_dssp SCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHH----TTCEEEEEESSHHHHHHHHHHHHHHTS--
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHh----cCCeEEEEcCcHHHHHHHHHHHHHHhC--
Confidence 369999999988764 4899999999999999999999888774 345899999999999999999998864
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013778 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
.++.++|+.... .+++|+|+||++|.+.+.+.. ..++++++|||||||+
T Consensus 253 --~VglltGd~~~~----------------------------~~~~IlV~Tpe~L~~~L~~~~-~~l~~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 253 --DVGLMTGDITIN----------------------------PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHY 301 (1108)
T ss_dssp --SEEEECSSCBCC----------------------------CSCSEEEEEHHHHHHHHHHCS-SHHHHEEEEEEETGGG
T ss_pred --CccEEeCccccC----------------------------CCCCEEEeChHHHHHHHHcCc-cccccCCEEEEhhhhh
Confidence 566778876521 235899999999999888754 4578899999999999
Q ss_pred HhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch--hhhcc
Q 013778 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN--KLAQL 241 (436)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~--~~~~~ 241 (436)
+.+.++...+..++..+. +..+.+++|||+++... .+...
T Consensus 302 l~d~~rg~~~e~ii~~l~--------------------------------------~~~qvl~lSATipn~~e~a~~l~~ 343 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSATIPNAMEFAEWICK 343 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSC--------------------------------------TTSEEEEEECSCSSCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHhcC--------------------------------------CCceEEEEcCCCCCHHHHHHHHHh
Confidence 998888888888877653 23478999999876533 33333
Q ss_pred ccCCceeeec-CCccccCCccc------cceeeecc------------------------------------------C-
Q 013778 242 DLHHPLFLTT-GETRYKLPERL------ESYKLICE------------------------------------------S- 271 (436)
Q Consensus 242 ~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~------------------------------------------~- 271 (436)
....+..+.. .....+....+ ..+..... .
T Consensus 344 ~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (1108)
T 3l9o_A 344 IHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKG 423 (1108)
T ss_dssp HTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------------------
T ss_pred hcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 3333222211 11110000000 00000000 0
Q ss_pred --cCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccc------------------------------------
Q 013778 272 --KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------------------------------------ 313 (436)
Q Consensus 272 --~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~------------------------------------ 313 (436)
......+...+......++||||++++.|+.++..|...+..
T Consensus 424 ~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 503 (1108)
T 3l9o_A 424 DAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLL 503 (1108)
T ss_dssp -CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHH
T ss_pred cchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhh
Confidence 111222333444456679999999999999999998754211
Q ss_pred ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC--------CCChhHHHHHhhhcccCC
Q 013778 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--------PAYIKTYIHRAGRTARAG 385 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~--------~~s~~~~~Q~~GR~~R~~ 385 (436)
..+++.+||+|.+.+|..+++.|.+|.++|||||+++++|+|+|++++||.++. +.|+.+|+||+||+||.|
T Consensus 504 ~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 504 RRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp HHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred hcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 112899999999999999999999999999999999999999999999996654 337788999999999998
Q ss_pred --CCceEEEEecch-hHHHHHHHHH
Q 013778 386 --QLGRCFTLLHKD-EVKRFKKLLQ 407 (436)
Q Consensus 386 --~~g~~~~~~~~~-~~~~~~~~~~ 407 (436)
..|.|++++.+. +...+..++.
T Consensus 584 ~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 584 LDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp SCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred CCCceEEEEEecCCcCHHHHHHHhc
Confidence 568899888776 3344555543
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-40 Score=336.05 Aligned_cols=323 Identities=19% Similarity=0.206 Sum_probs=238.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
++|+ |+++|.+++..+.. ++++++++|||+|||+++.+++...+. .+.+++|++|+++|+.|+++.+...+
T Consensus 83 ~~f~-L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~----~g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK----NKQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH----TTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc----cCCeEEEECChHHHHHHHHHHHHHHh
Confidence 4675 99999999988764 789999999999999999888887664 34589999999999999999999886
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
. .+..++|+.... .+.+|+|+||++|.+.+.+.. ..++++++||+||
T Consensus 154 ~----~vglltGd~~~~----------------------------~~~~IvV~Tpe~L~~~L~~~~-~~l~~l~lVViDE 200 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN----------------------------PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDE 200 (1010)
T ss_dssp S----CEEEECSSCEEC----------------------------TTCSEEEEEHHHHHHHHHHTC-TTGGGEEEEEEET
T ss_pred C----CEEEEeCCCccC----------------------------CCCCEEEEcHHHHHHHHHcCc-chhhcCCEEEEec
Confidence 4 677788876532 134899999999998887644 5578999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch--hh
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN--KL 238 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~--~~ 238 (436)
+|.+.+..+...++.++..+. ...+.+++|||+++... .+
T Consensus 201 aH~l~d~~rg~~~e~il~~l~--------------------------------------~~~~il~LSATi~n~~e~a~~ 242 (1010)
T 2xgj_A 201 VHYMRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSATIPNAMEFAEW 242 (1010)
T ss_dssp GGGGGCTTTHHHHHHHHHHSC--------------------------------------TTCEEEEEECCCTTHHHHHHH
T ss_pred hhhhcccchhHHHHHHHHhcC--------------------------------------CCCeEEEEcCCCCCHHHHHHH
Confidence 999987766666676666542 23468999999865322 22
Q ss_pred hccccCCceeeecCCccccCCccccceee----------ecc-------------------------------------C
Q 013778 239 AQLDLHHPLFLTTGETRYKLPERLESYKL----------ICE-------------------------------------S 271 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-------------------------------------~ 271 (436)
.......+..+....... .....+.. ... .
T Consensus 243 l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k 319 (1010)
T 2xgj_A 243 ICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYK 319 (1010)
T ss_dssp HHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---------------------
T ss_pred HHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccc
Confidence 221112222111110000 00000000 000 0
Q ss_pred --------cCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccc------------------------------
Q 013778 272 --------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------------------------------ 313 (436)
Q Consensus 272 --------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~------------------------------ 313 (436)
......+...+......++||||+++..|+.++..|...+..
T Consensus 320 ~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~ 399 (1010)
T 2xgj_A 320 GGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIK 399 (1010)
T ss_dssp ---------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHH
T ss_pred cccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHH
Confidence 112233444455556679999999999999999998763211
Q ss_pred ------ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEE----ecC----CCChhHHHHHhh
Q 013778 314 ------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK----PAYIKTYIHRAG 379 (436)
Q Consensus 314 ------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~----~~~----~~s~~~~~Q~~G 379 (436)
..+++.+||++.+.+|..+++.|++|.++|||||+++++|+|+|++++||. |+. |.++.+|.||+|
T Consensus 400 ~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~G 479 (1010)
T 2xgj_A 400 HILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSG 479 (1010)
T ss_dssp HHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHT
T ss_pred HHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhh
Confidence 124899999999999999999999999999999999999999999999998 887 789999999999
Q ss_pred hcccCCCC--ceEEEEecch-hHHHHHHHH
Q 013778 380 RTARAGQL--GRCFTLLHKD-EVKRFKKLL 406 (436)
Q Consensus 380 R~~R~~~~--g~~~~~~~~~-~~~~~~~~~ 406 (436)
|+||.|.+ |.|++++.+. +...+.+++
T Consensus 480 RAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 480 RAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp TBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred hcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 99999874 9999999865 445555554
No 29
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.3e-40 Score=339.99 Aligned_cols=342 Identities=20% Similarity=0.307 Sum_probs=246.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||. | ++|.+++..++. ++++++.+|||+|||+ +.++++..+.. .++++||++||++|+.|+++.+..++
T Consensus 54 ~g~~-p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRILR----KESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TCSC-C-HHHHHHHHHHHT----TCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred cCCC-H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 6898 9 999999998875 7999999999999998 66666665543 45689999999999999999999998
Q ss_pred hhhCc----eEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEE
Q 013778 81 PAVGL----SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 156 (436)
Q Consensus 81 ~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~i 156 (436)
...++ .+..++|+.+...+.. .+..+.. ++|+|+||++|.+.+.+ +++++++
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~------------------~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~l 179 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKEN------------------FMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFI 179 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHH------------------HHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEE
T ss_pred hhcCCCccceEEEEeCCCChhhHHH------------------HHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEE
Confidence 88787 8999999887655321 1122333 79999999999987765 6689999
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013778 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+||||++.+ +...+..++..+........ .......+.+++|||.+.. .
T Consensus 180 ViDEah~~l~--~~~~~~~i~~~lgf~~~~~~---------------------------~~~~~~~q~~l~SAT~t~~-~ 229 (1054)
T 1gku_B 180 FVDDVDAILK--ASKNVDKLLHLLGFHYDLKT---------------------------KSWVGEARGCLMVSTATAK-K 229 (1054)
T ss_dssp EESCHHHHHT--STHHHHHHHHHTTEEEETTT---------------------------TEEEECCSSEEEECCCCSC-C
T ss_pred EEeChhhhhh--ccccHHHHHHHhCcchhhhh---------------------------hhcccCCceEEEEecCCCc-h
Confidence 9999999877 45566666665532110000 0001234678999998876 4
Q ss_pred hhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013778 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
......+.++..+......... ..+..... ...+...+..+++.. ++++||||++++.++.+++.|++. +.
T Consensus 230 ~~~~~~~~~~~~i~v~~~~~~~-~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~----~~ 300 (1054)
T 1gku_B 230 GKKAELFRQLLNFDIGSSRITV-RNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK----FR 300 (1054)
T ss_dssp CTTHHHHHHHHCCCCSCCEECC-CCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS----SC
T ss_pred hHHHHHhhcceEEEccCcccCc-CCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc----cC
Confidence 3333333333222221111111 11222222 345566677777665 578999999999999999999865 68
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEe----cCCcccccCCCCC-CeEEEecCC-----------------------
Q 013778 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEGV-NNVVNYDKP----------------------- 368 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----t~~~~~Gidi~~~-~~vi~~~~~----------------------- 368 (436)
+..+||++. .+++.|++|+.+|||| |+++++|+|+|++ ++||+++.|
T Consensus 301 v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 375 (1054)
T 1gku_B 301 IGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYL 375 (1054)
T ss_dssp EEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTT
T ss_pred eeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHH
Confidence 899999883 6788999999999999 8999999999995 999999999
Q ss_pred ------------------------------------------------CChhHHHHHhhhcccCCCCc--eEEEEecchh
Q 013778 369 ------------------------------------------------AYIKTYIHRAGRTARAGQLG--RCFTLLHKDE 398 (436)
Q Consensus 369 ------------------------------------------------~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~ 398 (436)
.+...|+||+||+||.|..| ++++++...+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d 455 (1054)
T 1gku_B 376 YRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDD 455 (1054)
T ss_dssp TSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecC
Confidence 68999999999999976664 5788877777
Q ss_pred HHHHHHHHHHhcCCCCCCCCCC
Q 013778 399 VKRFKKLLQKADNDSCPIHSIP 420 (436)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~ 420 (436)
...+..+.+.+....+....++
T Consensus 456 ~~~~~~l~~~l~~~~~~~~~~~ 477 (1054)
T 1gku_B 456 SELLSAFIERAKLYDIEFKSID 477 (1054)
T ss_dssp HHHHHHHHHHHHTTSSCCCBCS
T ss_pred HHHHHHHHHHHhhccCccccCC
Confidence 7777777777664224444443
No 30
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.2e-39 Score=342.08 Aligned_cols=366 Identities=19% Similarity=0.180 Sum_probs=255.6
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh-
Q 013778 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA- 80 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~- 80 (436)
+|+.++|.|.+++..++. .+++++++||||||||+++.+++++.+... ++.+++|++|+++|+.|.++.+...+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~~~--~~~kavyi~P~raLa~q~~~~~~~~f~ 997 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLLQS--SEGRCVYITPMEALAEQVYMDWYEKFQ 997 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHHHC--TTCCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHHhC--CCCEEEEEcChHHHHHHHHHHHHHHhc
Confidence 688999999999999886 578999999999999999999999988764 45689999999999999999998755
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC-cccCCccEEEEe
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~-~~~~~~~~iIiD 159 (436)
...|..+..++|+...+... ..+++|+|+||+++..++.+... ..+++++++|+|
T Consensus 998 ~~~g~~V~~ltGd~~~~~~~------------------------~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViD 1053 (1724)
T 4f92_B 998 DRLNKKVVLLTGETSTDLKL------------------------LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVD 1053 (1724)
T ss_dssp TTSCCCEEECCSCHHHHHHH------------------------HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEEC
T ss_pred hhcCCEEEEEECCCCcchhh------------------------cCCCCEEEECHHHHHHHHhCcccccccceeeEEEee
Confidence 44689999999987543332 12349999999999887776443 347889999999
Q ss_pred hhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013778 160 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 160 E~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
|+|.+.+ ..+..++.++.++...... .....+.+++|||+.+......
T Consensus 1054 E~H~l~d-~rg~~le~il~rl~~i~~~-------------------------------~~~~~riI~lSATl~N~~dla~ 1101 (1724)
T 4f92_B 1054 EVHLIGG-ENGPVLEVICSRMRYISSQ-------------------------------IERPIRIVALSSSLSNAKDVAH 1101 (1724)
T ss_dssp CGGGGGS-TTHHHHHHHHHHHHHHHHT-------------------------------TSSCCEEEEEESCBTTHHHHHH
T ss_pred chhhcCC-CCCccHHHHHHHHHHHHhh-------------------------------cCCCceEEEEeCCCCCHHHHHH
Confidence 9997765 3455566655544321100 0134578999999975433322
Q ss_pred ccccCCceeeecCCccccCCccccceeeeccCcC-------cHHHHHHHH-HhcCCCcEEEEcCCchhHHHHHHHHhhhc
Q 013778 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKL-------KPLYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLNHFG 311 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l-~~~~~~~~lvf~~~~~~~~~~~~~l~~~~ 311 (436)
+................+. +.+.+........ ....+...+ +...++++||||+++..|+.++..|....
T Consensus 1102 WL~~~~~~~~~~~~~~RPv--pL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~ 1179 (1724)
T 4f92_B 1102 WLGCSATSTFNFHPNVRPV--PLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTC 1179 (1724)
T ss_dssp HHTCCSTTEEECCGGGCSS--CEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCeEEeCCCCCCC--CeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHH
Confidence 2222222221111111111 1111111111111 112222333 33457789999999999999888774321
Q ss_pred c-------------------------------cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCC
Q 013778 312 E-------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360 (436)
Q Consensus 312 ~-------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~ 360 (436)
. ...+++.+|++|+..+|..+.+.|++|.++|||||++++.|+|+|..+
T Consensus 1180 ~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~ 1259 (1724)
T 4f92_B 1180 AADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHL 1259 (1724)
T ss_dssp HHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSE
T ss_pred hhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccE
Confidence 0 123689999999999999999999999999999999999999999988
Q ss_pred eEEE----e------cCCCChhHHHHHhhhcccCCCC--ceEEEEecchhHHHHHHHHHHhcCCCCCCCC-CChhhhhhh
Q 013778 361 NVVN----Y------DKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADNDSCPIHS-IPSSLIESL 427 (436)
Q Consensus 361 ~vi~----~------~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 427 (436)
+||. + ..+.++.+|.||+||+||.|.+ |.+++++...+...+++++ ....|+++ +...+.+.+
T Consensus 1260 VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll----~~~~pveS~L~~~l~~~l 1335 (1724)
T 4f92_B 1260 VIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL----YEPLPVESHLDHCMHDHF 1335 (1724)
T ss_dssp EEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT----TSCBCCCCCGGGSCHHHH
T ss_pred EEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHh----CCCCceeeecccchHHHH
Confidence 7773 2 2246799999999999999874 9999999988887777665 33333332 344444444
Q ss_pred hhccccC
Q 013778 428 RPVYKSG 434 (436)
Q Consensus 428 ~~~~~~~ 434 (436)
+.....|
T Consensus 1336 ~~eI~~~ 1342 (1724)
T 4f92_B 1336 NAEIVTK 1342 (1724)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 4444333
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-39 Score=333.46 Aligned_cols=337 Identities=19% Similarity=0.197 Sum_probs=199.7
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc-CCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
|+..|+|+|.++++.++. ++++++.+|||+|||++++++++..+..... .+.++||++|+++|+.||.+.+..++
T Consensus 245 ~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ---CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 577899999999998864 7899999999999999999988877655311 15689999999999999999999999
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
+..++.+..++|+........ ....+++|+|+||++|.+.+.......+++++++|+||
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~---------------------~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDE 379 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (936)
T ss_dssp HTTTCCEEEECCC-----CCH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEET
T ss_pred cccCceEEEEECCcchhhHHH---------------------HhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEEC
Confidence 877899999999875433221 12234599999999999998875533688899999999
Q ss_pred hhHHhhHhHh-hhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch---
Q 013778 161 TDRLLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN--- 236 (436)
Q Consensus 161 ~h~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~--- 236 (436)
||++...... ..+..+....... ..+..+.+++|||+.....
T Consensus 380 aH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~LSATp~~~~~~~l 425 (936)
T 4a2w_A 380 CHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAKNI 425 (936)
T ss_dssp GGGCSTTCHHHHHHHHHHHHHHTT----------------------------------CSCCCEEEEEESCCCCTTCCSH
T ss_pred ccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCcCeEEEecCCcccccchhH
Confidence 9998765322 2222222211000 0123467888888842110
Q ss_pred -----hh---------------------hccccCCceeeecCCccccC--------------------------------
Q 013778 237 -----KL---------------------AQLDLHHPLFLTTGETRYKL-------------------------------- 258 (436)
Q Consensus 237 -----~~---------------------~~~~~~~~~~~~~~~~~~~~-------------------------------- 258 (436)
.+ .......+............
T Consensus 426 ~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~ 505 (936)
T 4a2w_A 426 EETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSK 505 (936)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 00 00000111100000000000
Q ss_pred ---Cc-----cccc------------------------------------------------------e-----------
Q 013778 259 ---PE-----RLES------------------------------------------------------Y----------- 265 (436)
Q Consensus 259 ---~~-----~~~~------------------------------------------------------~----------- 265 (436)
.. +... +
T Consensus 506 ~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 585 (936)
T 4a2w_A 506 KDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTE 585 (936)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred cccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCH
Confidence 00 0000 0
Q ss_pred --------------------eeeccCcCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhhcc---------
Q 013778 266 --------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE--------- 312 (436)
Q Consensus 266 --------------------~~~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~~~~~l~~~~~--------- 312 (436)
........|...+.+++.. ..+.++||||++++.++.+++.|++.+.
T Consensus 586 ~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l 665 (936)
T 4a2w_A 586 LEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVL 665 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEE
Confidence 0000023355556666654 3568999999999999999999997521
Q ss_pred cceeEEEeccccchHHHHHHHHHHhc-CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEE
Q 013778 313 LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~ 391 (436)
.+.....+||+|+..+|.+++++|++ |+++|||+|+++++|+|+|++++||+++.|+|+..|+||+|| ||. ..|.++
T Consensus 666 ~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi 743 (936)
T 4a2w_A 666 MGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCI 743 (936)
T ss_dssp ----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEE
T ss_pred ecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEE
Confidence 12445566889999999999999999 999999999999999999999999999999999999999999 998 689999
Q ss_pred EEecchhH
Q 013778 392 TLLHKDEV 399 (436)
Q Consensus 392 ~~~~~~~~ 399 (436)
+++...+.
T Consensus 744 ~Li~~~t~ 751 (936)
T 4a2w_A 744 LVTSKTEV 751 (936)
T ss_dssp EEESCHHH
T ss_pred EEEeCCCH
Confidence 99887654
No 32
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.4e-40 Score=349.14 Aligned_cols=366 Identities=19% Similarity=0.252 Sum_probs=256.4
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-------cCCccEEEEcCCHHHHHHHHH
Q 013778 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALVVLPTRDLALQVKD 74 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~lil~P~~~l~~q~~~ 74 (436)
||++|++.|.++++.++. +++|++++||||+|||+++.+++++.+.... ..+.++||++|+++|+.|.++
T Consensus 76 g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~ 152 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVG 152 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHH
Confidence 799999999999998886 5899999999999999999999999886532 135689999999999999999
Q ss_pred HHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC-cccCCc
Q 013778 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHL 153 (436)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~-~~~~~~ 153 (436)
.+.+.+...|+.+..++|+...... ...+++|+|+||+++..++.+... ..++++
T Consensus 153 ~l~~~~~~~gi~V~~~tGd~~~~~~------------------------~~~~~~IlVtTpEkld~llr~~~~~~~l~~v 208 (1724)
T 4f92_B 153 SFGKRLATYGITVAELTGDHQLCKE------------------------EISATQIIVCTPEKWDIITRKGGERTYTQLV 208 (1724)
T ss_dssp HHHHHHTTTTCCEEECCSSCSSCCT------------------------TGGGCSEEEECHHHHHHHTTSSTTHHHHTTE
T ss_pred HHHHHHhhCCCEEEEEECCCCCCcc------------------------ccCCCCEEEECHHHHHHHHcCCccchhhcCc
Confidence 9999988889999999998754321 113469999999999776665432 247889
Q ss_pred cEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeecccccc
Q 013778 154 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233 (436)
Q Consensus 154 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~ 233 (436)
++||+||+|.+.+ .-+..++.++.++...... ..+..+.+++|||+++
T Consensus 209 ~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~-------------------------------~~~~~riI~LSATl~N 256 (1724)
T 4f92_B 209 RLIILDEIHLLHD-DRGPVLEALVARAIRNIEM-------------------------------TQEDVRLIGLSATLPN 256 (1724)
T ss_dssp EEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHH-------------------------------HTCCCEEEEEECSCTT
T ss_pred CEEEEecchhcCC-ccHHHHHHHHHHHHHHHHh-------------------------------CCCCCcEEEEecccCC
Confidence 9999999997754 4445566555433210000 0023578999999964
Q ss_pred Cch--hhhccccCCce-eeecCCccccCCccccceeeeccCcC-------cHHHHHHHHHh-cCCCcEEEEcCCchhHHH
Q 013778 234 DPN--KLAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKL-------KPLYLVALLQS-LGEEKCIVFTSSVESTHR 302 (436)
Q Consensus 234 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~ 302 (436)
... .|......... .+....+ +.++........... ....+...+.. ..++++||||+|++.|+.
T Consensus 257 ~~dvA~wL~~~~~~~~~~~~~~~R----PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~ 332 (1724)
T 4f92_B 257 YEDVATFLRVDPAKGLFYFDNSFR----PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGK 332 (1724)
T ss_dssp HHHHHHHTTCCHHHHEEECCGGGC----SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHH
T ss_pred HHHHHHHhCCCCCCCeEEECCCCc----cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHH
Confidence 322 22211100111 1111111 111111111111111 11122222222 245689999999999999
Q ss_pred HHHHHhhhcc----------------------------------cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC
Q 013778 303 LCTLLNHFGE----------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348 (436)
Q Consensus 303 ~~~~l~~~~~----------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 348 (436)
+|+.|.+... ...+++.+|++|+..+|..+.+.|++|.++|||||+
T Consensus 333 ~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTs 412 (1724)
T 4f92_B 333 TARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTA 412 (1724)
T ss_dssp HHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECH
T ss_pred HHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcc
Confidence 9998865310 123589999999999999999999999999999999
Q ss_pred CcccccCCCCCCeEEE----ecC------CCChhHHHHHhhhcccCCCC--ceEEEEecchhHHHHHHHHHHhcCCCCCC
Q 013778 349 AMTRGMDVEGVNNVVN----YDK------PAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADNDSCPI 416 (436)
Q Consensus 349 ~~~~Gidi~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (436)
+++.|+|+|..++||. +++ +.++.+|.||+||+||.|.+ |.+++++...+...+..++.. ..++
T Consensus 413 TLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~----~~pi 488 (1724)
T 4f92_B 413 TLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQ----QLPI 488 (1724)
T ss_dssp HHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTT----CSCC
T ss_pred hhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcC----CCcc
Confidence 9999999999888874 332 45799999999999998754 999999998887777666532 2233
Q ss_pred -CCCChhhhhhhhhccccC
Q 013778 417 -HSIPSSLIESLRPVYKSG 434 (436)
Q Consensus 417 -~~~~~~~~~~~~~~~~~~ 434 (436)
..+.+.+.+.++.+...|
T Consensus 489 eS~l~~~l~d~L~aeI~~g 507 (1724)
T 4f92_B 489 ESQMVSKLPDMLNAEIVLG 507 (1724)
T ss_dssp CCCTTTTHHHHHHHHHHHT
T ss_pred hhhccccHHHHHHHHHHHh
Confidence 335566667776655444
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-39 Score=323.02 Aligned_cols=318 Identities=18% Similarity=0.228 Sum_probs=228.8
Q ss_pred CCCCcccchhHHHHHhhhCCCCCC--CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+|| .|+++|.++++.+...+..+ .++++++|||+|||.+++++++..+..+ .+++|++||++|+.|+++.+..
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g----~qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG----FQTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT----SCEEEECSCHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCcHHHHHHHHHHHHH
Confidence 578 89999999999988654333 5899999999999999999999877543 4899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013778 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
++...|+.+..++|+.+..... +.+..+.. .++|+|+||+.+.+ ...+.+++++|
T Consensus 440 ~~~~~gi~v~~l~G~~~~~~r~------------------~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVV 495 (780)
T 1gm5_A 440 SFSKFNIHVALLIGATTPSEKE------------------KIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVI 495 (780)
T ss_dssp HHTCSSCCEEECCSSSCHHHHH------------------HHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEE
T ss_pred HhhhcCceEEEEeCCCCHHHHH------------------HHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEE
Confidence 9988889999999998765542 12223333 47999999987744 24578899999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013778 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||+|++..... ..+. ......+.+++|||+.+....
T Consensus 496 IDEaHr~g~~qr--------~~l~-----------------------------------~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 496 IDEQHRFGVKQR--------EALM-----------------------------------NKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp EESCCCC-------------CCCC-----------------------------------SSSSCCCEEEEESSCCCHHHH
T ss_pred ecccchhhHHHH--------HHHH-----------------------------------HhCCCCCEEEEeCCCCHHHHH
Confidence 999997621110 0000 001234789999998665433
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh--cCCCcEEEEcCCch--------hHHHHHHHH
Q 013778 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE--------STHRLCTLL 307 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~--------~~~~~~~~l 307 (436)
.......+...+..... ....+. .......+...+.+.+.. ..+++++|||++++ .++.+++.|
T Consensus 533 ~~~~g~~~~s~i~~~p~---~r~~i~---~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L 606 (780)
T 1gm5_A 533 LAFYGDLDVTVIDEMPP---GRKEVQ---TMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYL 606 (780)
T ss_dssp HHHTCCSSCEEECCCCS---SCCCCE---ECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSG
T ss_pred HHHhCCcceeeeeccCC---CCcceE---EEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHH
Confidence 33222222221111000 001111 111122233444444433 24678999999765 467777777
Q ss_pred hhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC-ChhHHHHHhhhcccCCC
Q 013778 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQ 386 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~ 386 (436)
++....+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.+. +...+.|++||+||.|.
T Consensus 607 ~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~ 686 (780)
T 1gm5_A 607 SKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQ 686 (780)
T ss_dssp GGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSST
T ss_pred HhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCC
Confidence 76112347899999999999999999999999999999999999999999999999999985 68899999999999999
Q ss_pred CceEEEEecc
Q 013778 387 LGRCFTLLHK 396 (436)
Q Consensus 387 ~g~~~~~~~~ 396 (436)
.|.|++++.+
T Consensus 687 ~g~~ill~~~ 696 (780)
T 1gm5_A 687 EAYCFLVVGD 696 (780)
T ss_dssp TCEEECCCCS
T ss_pred CCEEEEEECC
Confidence 9999999873
No 34
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6.2e-39 Score=331.02 Aligned_cols=294 Identities=18% Similarity=0.266 Sum_probs=209.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|| +|+|+|.++++.++. +++++++||||+|||.+++++++..+. .+.++||++||++|+.|+++.+..++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHHHHHHhh
Confidence 477 599999999888765 789999999999999987777776552 45689999999999999999999976
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
..++.+..++|+.+..... +.+..+.. .++|+|+||++|.+++.. +.+++++++|+|
T Consensus 146 -~~~i~v~~l~Gg~~~~er~------------------~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViD 203 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKE------------------KFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVD 203 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHH------------------HHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEES
T ss_pred -CCCCeEEEEeCCCCHHHHH------------------HHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEe
Confidence 5688999999998763321 11123333 379999999999888775 567899999999
Q ss_pred hhhHHhh-----------HhHhhh-HHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeee
Q 013778 160 ETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 227 (436)
Q Consensus 160 E~h~~~~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (436)
|||++.. .+|... +..++..++... .. .........+.+++
T Consensus 204 EaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~----------------~~-----------~~~~~~~~~q~ll~ 256 (1104)
T 4ddu_A 204 DVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGK----------------IY-----------ERPKNLKPGILVVS 256 (1104)
T ss_dssp CHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTS----------------CC-----------CCCSSCCCCEEEEE
T ss_pred CCCccccccccchhhhHhcCCCHHHHHHHHHhcccch----------------hh-----------hhhccCCCceEEEE
Confidence 9998764 223333 455555443100 00 00000134588999
Q ss_pred cccccc-CchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHH
Q 013778 228 SATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 306 (436)
Q Consensus 228 sat~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~ 306 (436)
|||+.+ ............ +...... .....+...... ..+...+..+++.. ++++||||++++.++.++..
T Consensus 257 SAT~~p~~~~~~~~~~~l~---i~v~~~~-~~~~~i~~~~~~---~~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~ 328 (1104)
T 4ddu_A 257 SATAKPRGIRPLLFRDLLN---FTVGRLV-SVARNITHVRIS---SRSKEKLVELLEIF-RDGILIFAQTEEEGKELYEY 328 (1104)
T ss_dssp CBSSCCCSSTTHHHHHHTC---CCCCBCC-CCCCCEEEEEES---CCCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHH
T ss_pred cCCCCcHHHHHHHhhccee---EEeccCC-CCcCCceeEEEe---cCHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHH
Confidence 999543 322211111111 1111111 111122222221 25667777777764 48999999999999999999
Q ss_pred HhhhcccceeEE-EeccccchHHHHHHHHHHhcCCeeEEEe----cCCcccccCCCC-CCeEEEecCCC
Q 013778 307 LNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA 369 (436)
Q Consensus 307 l~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~----t~~~~~Gidi~~-~~~vi~~~~~~ 369 (436)
|++.+ +.+. .+||. |.+ ++.|++|+.+|||| |+++++|+|+|+ +++||+++.|.
T Consensus 329 L~~~g---~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 329 LKRFK---FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHTT---CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHhCC---CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99876 7887 88882 455 99999999999999 999999999999 99999999998
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.2e-38 Score=327.86 Aligned_cols=318 Identities=17% Similarity=0.189 Sum_probs=236.8
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCC--cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~--~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
|||+ ++|+|.++++.+...+.+++ ++++++|||+|||.+++.++...+. .+.+++|++||+.|+.|+++.+..
T Consensus 600 f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 600 FPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----NHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp CCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----TTCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----hCCeEEEEechHHHHHHHHHHHHH
Confidence 5775 79999999999887554454 8999999999999998887776554 344899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013778 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
++...++.+..+++..+..... ..+..+.. .++|+|+||+.+.. ...+++++++|
T Consensus 675 ~~~~~~i~v~~l~~~~~~~~~~------------------~~~~~l~~g~~dIvV~T~~ll~~------~~~~~~l~lvI 730 (1151)
T 2eyq_A 675 RFANWPVRIEMISRFRSAKEQT------------------QILAEVAEGKIDILIGTHKLLQS------DVKFKDLGLLI 730 (1151)
T ss_dssp HSTTTTCCEEEESTTSCHHHHH------------------HHHHHHHTTCCSEEEECTHHHHS------CCCCSSEEEEE
T ss_pred HhhcCCCeEEEEeCCCCHHHHH------------------HHHHHHhcCCCCEEEECHHHHhC------CccccccceEE
Confidence 9887788888888876654432 22223333 47999999976632 25578999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013778 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||+|++... ....+..+. ...+.+++|||+.+....
T Consensus 731 iDEaH~~g~~-~~~~l~~l~------------------------------------------~~~~vl~lSATp~p~~l~ 767 (1151)
T 2eyq_A 731 VDEEHRFGVR-HKERIKAMR------------------------------------------ANVDILTLTATPIPRTLN 767 (1151)
T ss_dssp EESGGGSCHH-HHHHHHHHH------------------------------------------TTSEEEEEESSCCCHHHH
T ss_pred EechHhcChH-HHHHHHHhc------------------------------------------CCCCEEEEcCCCChhhHH
Confidence 9999996332 222222211 123689999999776655
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013778 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
.....+.++..+...... ...+..+.. ..........+++.. .+++++|||++++.++.+++.|++.. .+..
T Consensus 768 ~~~~~~~~~~~i~~~~~~---r~~i~~~~~---~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~-p~~~ 840 (1151)
T 2eyq_A 768 MAMSGMRDLSIIATPPAR---RLAVKTFVR---EYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV-PEAR 840 (1151)
T ss_dssp HHHTTTSEEEECCCCCCB---CBCEEEEEE---ECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC-TTSC
T ss_pred HHHhcCCCceEEecCCCC---ccccEEEEe---cCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC-CCCe
Confidence 555554444333211110 011111111 112223333333332 57899999999999999999999862 2378
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC-CCChhHHHHHhhhcccCCCCceEEEEec
Q 013778 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-PAYIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~-~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
+..+||.|+..+|.++++.|.+|+.+|||||+++++|+|+|++++||+++. +.+...|.|++||+||.|+.|.|++++.
T Consensus 841 v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~ 920 (1151)
T 2eyq_A 841 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 920 (1151)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEEC
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEEC
Confidence 999999999999999999999999999999999999999999999999987 5689999999999999999999999987
Q ss_pred ch
Q 013778 396 KD 397 (436)
Q Consensus 396 ~~ 397 (436)
+.
T Consensus 921 ~~ 922 (1151)
T 2eyq_A 921 HP 922 (1151)
T ss_dssp CG
T ss_pred Cc
Confidence 64
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.4e-38 Score=325.73 Aligned_cols=329 Identities=16% Similarity=0.145 Sum_probs=235.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
++|+ |+++|.+++..+.. ++++++.+|||+|||+++++++...+. .+.+++|++|+++|+.|+++.+...+
T Consensus 36 ~~f~-l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~----~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR----NMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH----TTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCC-CCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 4664 89999999988764 799999999999999988887776543 44589999999999999999999876
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
. ++.+..++|+.... ...+|+|+||++|.+.+.... ..++++++|||||
T Consensus 107 ~--~~~v~~l~G~~~~~----------------------------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~lvViDE 155 (997)
T 4a4z_A 107 D--DVNIGLITGDVQIN----------------------------PDANCLIMTTEILRSMLYRGA-DLIRDVEFVIFDE 155 (997)
T ss_dssp ----CCEEEECSSCEEC----------------------------TTSSEEEEEHHHHHHHHHHTC-SGGGGEEEEEECC
T ss_pred C--CCeEEEEeCCCccC----------------------------CCCCEEEECHHHHHHHHHhCc-hhhcCCCEEEEEC
Confidence 5 57888888876432 224899999999999887644 4578899999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh--h
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--L 238 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~--~ 238 (436)
||++.+..+...++.+...+.. ..+.+++|||+++.... +
T Consensus 156 aH~l~d~~~g~~~e~ii~~l~~--------------------------------------~v~iIlLSAT~~n~~ef~~~ 197 (997)
T 4a4z_A 156 VHYVNDQDRGVVWEEVIIMLPQ--------------------------------------HVKFILLSATVPNTYEFANW 197 (997)
T ss_dssp TTCCCTTCTTCCHHHHHHHSCT--------------------------------------TCEEEEEECCCTTHHHHHHH
T ss_pred cccccccchHHHHHHHHHhccc--------------------------------------CCCEEEEcCCCCChHHHHHH
Confidence 9998888777777777665532 34678899998643211 1
Q ss_pred hcccc-CCceeeecCCccccCCcc--------------------------------------------------------
Q 013778 239 AQLDL-HHPLFLTTGETRYKLPER-------------------------------------------------------- 261 (436)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 261 (436)
..... .+..++.......++...
T Consensus 198 l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (997)
T 4a4z_A 198 IGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGG 277 (997)
T ss_dssp HHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------------------
T ss_pred HhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccc
Confidence 11100 000011000000000000
Q ss_pred ---------------------------------ccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh
Q 013778 262 ---------------------------------LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308 (436)
Q Consensus 262 ---------------------------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~ 308 (436)
...+........+...+...+......++||||++++.|+.++..|.
T Consensus 278 ~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~ 357 (997)
T 4a4z_A 278 SNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLE 357 (997)
T ss_dssp ---------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHh
Confidence 00000011122345566677777777899999999999999999997
Q ss_pred hhccc------------------------------------ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCccc
Q 013778 309 HFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352 (436)
Q Consensus 309 ~~~~~------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~ 352 (436)
+.+.. ..++..+|++|++.+|..+++.|.+|..+|||||+++++
T Consensus 358 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~ 437 (997)
T 4a4z_A 358 GINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAM 437 (997)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhC
Confidence 64321 125889999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEecCCC---------ChhHHHHHhhhcccCCC--CceEEEEec--chhHHHHHHHHHH
Q 013778 353 GMDVEGVNNVVNYDKPA---------YIKTYIHRAGRTARAGQ--LGRCFTLLH--KDEVKRFKKLLQK 408 (436)
Q Consensus 353 Gidi~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~~~--~g~~~~~~~--~~~~~~~~~~~~~ 408 (436)
|+|+|+ ..||+.+.+. |+.+|+|++||+||.|. .|.|++++. ..+...++.++..
T Consensus 438 GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~ 505 (997)
T 4a4z_A 438 GLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMG 505 (997)
T ss_dssp SCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHS
T ss_pred CCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcC
Confidence 999999 6666655554 89999999999999884 477888873 3345556555443
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.1e-39 Score=324.66 Aligned_cols=329 Identities=19% Similarity=0.224 Sum_probs=212.6
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc--CCccEEEEcCCHHHHHHH-HHHHHHhhh
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQV-KDVFAAIAP 81 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~lil~P~~~l~~q~-~~~~~~~~~ 81 (436)
.|+|+|.++++.++. ++++++.+|||+|||++++++++..+..+.. .+.++||++|+++|+.|| .+.+..++.
T Consensus 7 ~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 699999999998876 7899999999999999999999888766522 225899999999999999 999999876
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcC-----CCcccCCccEE
Q 013778 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-----RGFTLEHLCYL 156 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~-----~~~~~~~~~~i 156 (436)
. ++.+..++|+....... .....+++|+|+||+.|.+.+... ..+.+.++++|
T Consensus 83 ~-~~~v~~~~g~~~~~~~~---------------------~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISF---------------------PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp T-TSCEEEEC----CCCCH---------------------HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred c-CceEEEEeCCcchhhHH---------------------HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 5 47888888887543321 122245699999999999887421 23567889999
Q ss_pred EEehhhHHhhHhHhhhH-HHHHhhc-ccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013778 157 VVDETDRLLREAYQAWL-PTVLQLT-RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~-~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
||||||++.....+..+ ..+.... .... .........+..+.+++|||+...
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~--------------------------~~~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 141 IIDECHHTNKEAVYNNIMRHYLMQKLKNNR--------------------------LKKENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp EEESGGGCBTTBSSCSHHHHHHHHHHHHHH--------------------------HHC----CCCCCEEEEECSCCCCC
T ss_pred EEECccccCccchHHHHHHHHHHhhhcccc--------------------------cccccccCCCCCEEEEeccccccc
Confidence 99999987554333222 2221110 0000 000000111234688999999863
Q ss_pred ch--------hhh---cc-c-----------------cCCceeee--cCCcccc--------------------CCcccc
Q 013778 235 PN--------KLA---QL-D-----------------LHHPLFLT--TGETRYK--------------------LPERLE 263 (436)
Q Consensus 235 ~~--------~~~---~~-~-----------------~~~~~~~~--~~~~~~~--------------------~~~~~~ 263 (436)
.. .+. .. . ...|.... ....... ......
T Consensus 195 ~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g 274 (699)
T 4gl2_A 195 GATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFG 274 (699)
T ss_dssp SCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSS
T ss_pred ccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhcc
Confidence 11 000 00 0 01110000 0000000 000000
Q ss_pred -----c--------------------------------------------------------------------------
Q 013778 264 -----S-------------------------------------------------------------------------- 264 (436)
Q Consensus 264 -----~-------------------------------------------------------------------------- 264 (436)
.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (699)
T 4gl2_A 275 TQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDET 354 (699)
T ss_dssp SHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchh
Confidence 0
Q ss_pred ------------------eeeeccCcCcHHHHHHHH----HhcC-CCcEEEEcCCchhHHHHHHHHhhhc---ccceeEE
Q 013778 265 ------------------YKLICESKLKPLYLVALL----QSLG-EEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIK 318 (436)
Q Consensus 265 ------------------~~~~~~~~~~~~~l~~~l----~~~~-~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~ 318 (436)
.........+...+.+++ ...+ ++++||||++++.++.+++.|++.. ..++.+.
T Consensus 355 ~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~ 434 (699)
T 4gl2_A 355 DRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAH 434 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CE
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceE
Confidence 000000112222233333 2224 7899999999999999999998751 1137899
Q ss_pred Eeccc--------cchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCC
Q 013778 319 EYSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 385 (436)
Q Consensus 319 ~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 385 (436)
.+||+ |+..+|.+++++|++|+.+|||+|+++++|+|+|++++||+++.|+|+..|+||+||++|.|
T Consensus 435 ~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 435 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp ECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred EEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999976644
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.4e-39 Score=310.85 Aligned_cols=310 Identities=18% Similarity=0.195 Sum_probs=218.7
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|+|+|.++++.++. ++++++++|||+|||.+++.++...+.. .+.++||++|+++|+.||.+.+..+....+
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH---CSSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC---CCCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 799999999998875 5889999999999999998888776654 334899999999999999999998855445
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013778 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
..+..+.++...... ...+.+|+|+||+.+... ....++++++||+||||++
T Consensus 186 ~~v~~~~~~~~~~~~------------------------~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~ 237 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------------------------YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLA 237 (510)
T ss_dssp GGEEECGGGCCTTGG------------------------GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGC
T ss_pred cceEEEecCCccccc------------------------cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCC
Confidence 677777777654322 223469999999976432 2245778999999999998
Q ss_pred hhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc-ccc
Q 013778 165 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDL 243 (436)
Q Consensus 165 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-~~~ 243 (436)
.... +..++..+. ...+.+++|||+.+....... ..+
T Consensus 238 ~~~~----~~~il~~~~--------------------------------------~~~~~l~lSATp~~~~~~~~~~~~~ 275 (510)
T 2oca_A 238 TGKS----ISSIISGLN--------------------------------------NCMFKFGLSGSLRDGKANIMQYVGM 275 (510)
T ss_dssp CHHH----HHHHGGGCT--------------------------------------TCCEEEEEESCGGGCSSCHHHHHHH
T ss_pred Cccc----HHHHHHhcc--------------------------------------cCcEEEEEEeCCCCCcccHHHhHHh
Confidence 6533 223333221 123578999999765433211 111
Q ss_pred CCceeeecCCccc-----cCCcccc-----------------c----eeeeccCcCcHHHHHHHHHhc---CCCcEEEEc
Q 013778 244 HHPLFLTTGETRY-----KLPERLE-----------------S----YKLICESKLKPLYLVALLQSL---GEEKCIVFT 294 (436)
Q Consensus 244 ~~~~~~~~~~~~~-----~~~~~~~-----------------~----~~~~~~~~~~~~~l~~~l~~~---~~~~~lvf~ 294 (436)
..+.......... ..+.... . +........+...+.+.+... .+.++|||+
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~ 355 (510)
T 2oca_A 276 FGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFK 355 (510)
T ss_dssp HCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred hCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 1222211111100 0000000 0 000111112333344444433 344566666
Q ss_pred CCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEec-CCcccccCCCCCCeEEEecCCCChhH
Q 013778 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 373 (436)
Q Consensus 295 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t-~~~~~Gidi~~~~~vi~~~~~~s~~~ 373 (436)
+ +++++.+++.|.+.+ ..+..+||+++..+|.++++.|.+|+.+|||+| +++++|+|+|++++||+++.++|+..
T Consensus 356 ~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~ 431 (510)
T 2oca_A 356 H-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKII 431 (510)
T ss_dssp S-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCH
T ss_pred c-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHH
Confidence 6 999999999999876 488999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhhhcccCCCCceEEEEec
Q 013778 374 YIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 374 ~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
|.|++||+||.|+.+.++++++
T Consensus 432 ~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 432 VLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHhcccccCCCCceEEEEE
Confidence 9999999999987764444433
No 39
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=7.1e-38 Score=301.00 Aligned_cols=289 Identities=25% Similarity=0.293 Sum_probs=210.4
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|+|+|.++++.+.. ++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+..+ +
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 699999999988765 5679999999999999988776643 347999999999999999999883 6
Q ss_pred ce-EEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013778 85 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 85 ~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
.. +..++|+... ..+|+|+||+.+...+... ..++++||+||||+
T Consensus 158 ~~~v~~~~g~~~~------------------------------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 158 EEYVGEFSGRIKE------------------------------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (472)
T ss_dssp GGGEEEBSSSCBC------------------------------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGG
T ss_pred CcceEEECCCcCC------------------------------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcC
Confidence 77 8888877642 2489999999997766531 24589999999999
Q ss_pred HhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCc--------
Q 013778 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-------- 235 (436)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~-------- 235 (436)
+.+..+.. +...+. ..+.+++|||+.+..
T Consensus 204 ~~~~~~~~----~~~~~~---------------------------------------~~~~l~lSATp~~~~~~~~~l~~ 240 (472)
T 2fwr_A 204 LPAESYVQ----IAQMSI---------------------------------------APFRLGLTATFEREDGRHEILKE 240 (472)
T ss_dssp TTSTTTHH----HHHTCC---------------------------------------CSEEEEEESCCCCTTSGGGSHHH
T ss_pred CCChHHHH----HHHhcC---------------------------------------CCeEEEEecCccCCCCHHHHHHH
Confidence 87665443 222221 124577788876321
Q ss_pred -----------hhhhccccCCceeeecCCccc-------------------------cCCccccce--------------
Q 013778 236 -----------NKLAQLDLHHPLFLTTGETRY-------------------------KLPERLESY-------------- 265 (436)
Q Consensus 236 -----------~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~-------------- 265 (436)
..+....+.++.......... ........+
T Consensus 241 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (472)
T 2fwr_A 241 VVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEAL 320 (472)
T ss_dssp HTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTT
T ss_pred HhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHH
Confidence 111111111111100000000 000000000
Q ss_pred -------eeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhc
Q 013778 266 -------KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338 (436)
Q Consensus 266 -------~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 338 (436)
........+...+.+++....++++||||++.+.++.+++.|. +..+||+++..+|.++++.|++
T Consensus 321 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 321 RAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhC
Confidence 0011233456777888888778999999999999999999874 4568999999999999999999
Q ss_pred CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCC-ceEEEE
Q 013778 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTL 393 (436)
Q Consensus 339 g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~ 393 (436)
|+.+|||+|+++++|+|+|++++||+++.++++..|.|++||++|.|+. +.+++|
T Consensus 393 g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 393 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999998855 455554
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4e-36 Score=292.49 Aligned_cols=368 Identities=19% Similarity=0.214 Sum_probs=246.6
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|| .|++.|..++..++. |+ |..++||+|||+++.+|++.... .+..++|++||+.|+.|.++++..++
T Consensus 80 lG~-~pt~VQ~~~ip~ll~----G~--Iaea~TGeGKTlaf~LP~~l~aL----~g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALHD----GN--IAEMKTGEGKTLTSTLPVYLNAL----TGKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HSC-CCCHHHHHHHHHHHT----TS--EEECCTTSCHHHHHHHHHHHHHT----TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHHhC----CC--EEEccCCcHHHHHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 488 899999999887764 55 99999999999999999884322 34579999999999999999999999
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCC-----CcccCCcc
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 154 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~-----~~~~~~~~ 154 (436)
...|+.+.++.|+.+..... ...+++|+|+||+.| ++++..+. .+.++.+.
T Consensus 149 ~~lgl~v~~i~gg~~~~~r~-----------------------~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~ 205 (844)
T 1tf5_A 149 EFLGLTVGLNLNSMSKDEKR-----------------------EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLH 205 (844)
T ss_dssp HHTTCCEEECCTTSCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCC
T ss_pred hhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCC
Confidence 99999999999997644332 123469999999999 66655432 24578899
Q ss_pred EEEEehhhHHh-hHh---------------HhhhHHHHHhhcccc--------ccccc-cc----------c-ccccccc
Q 013778 155 YLVVDETDRLL-REA---------------YQAWLPTVLQLTRSD--------NENRF-SD----------A-STFLPSA 198 (436)
Q Consensus 155 ~iIiDE~h~~~-~~~---------------~~~~~~~i~~~~~~~--------~~~~~-~~----------~-~~~~~~~ 198 (436)
++|+||||.++ +.+ ++..+..++..+... ..... .. . ...+..+
T Consensus 206 ~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat 285 (844)
T 1tf5_A 206 FAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 285 (844)
T ss_dssp EEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGG
T ss_pred EEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCc
Confidence 99999999998 442 566677777766420 00000 00 0 0000000
Q ss_pred cc----cc-------c-------cc-------------------cccc--c------ccccCCCC------------cc-
Q 013778 199 FG----SL-------K-------TI-------------------RRCG--V------ERGFKDKP------------YP- 220 (436)
Q Consensus 199 ~~----~~-------~-------~~-------------------~~~~--~------~~~~~~~~------------~~- 220 (436)
.. .. . .+ ++++ + +..+.-.. ++
T Consensus 286 ~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr 365 (844)
T 1tf5_A 286 HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFR 365 (844)
T ss_dssp GHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHT
T ss_pred cchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHH
Confidence 00 00 0 00 0000 0 00000000 00
Q ss_pred -ceeeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh--cCCCcEEEEcCCc
Q 013778 221 -RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 297 (436)
Q Consensus 221 -~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~ 297 (436)
-.+...+|+|......++......+...++.. ....... ....+......|...+...+.. ..+.++||||+|+
T Consensus 366 ~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn--~p~~r~d-~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~ 442 (844)
T 1tf5_A 366 MYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN--RPVVRDD-RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAV 442 (844)
T ss_dssp TSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS--SCCCCEE-CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred HHhhhccCCcccchhHHHHHHHhCCceEEecCC--CCccccc-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCH
Confidence 01234566666544444333332222222111 1111111 1112233445566677766654 2466899999999
Q ss_pred hhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCC--------CCCeEEEecCCC
Q 013778 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKPA 369 (436)
Q Consensus 298 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~--------~~~~vi~~~~~~ 369 (436)
+.++.++..|++.+ +++..+|+++...+|..+..+|+.| .|+|||+++++|+|++ +..+||+++.|.
T Consensus 443 ~~se~Ls~~L~~~g---i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~ 517 (844)
T 1tf5_A 443 ETSELISKLLKNKG---IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE 517 (844)
T ss_dssp HHHHHHHHHHHTTT---CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS
T ss_pred HHHHHHHHHHHHCC---CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC
Confidence 99999999999887 8899999999888877666666655 7999999999999999 788999999999
Q ss_pred ChhHHHHHhhhcccCCCCceEEEEecchhH-------HHHHHHHHHhc
Q 013778 370 YIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 410 (436)
Q Consensus 370 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 410 (436)
|...|.|++||+||.|.+|.+++|++..|. ++...+++.+.
T Consensus 518 s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~~~~~~~~~~~~~ 565 (844)
T 1tf5_A 518 SRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAMLDRFG 565 (844)
T ss_dssp SHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSHHHHHHHHHHHHT
T ss_pred CHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHhHHHHHHHHHhcC
Confidence 999999999999999999999999986552 33555665553
No 41
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=7.1e-37 Score=288.85 Aligned_cols=280 Identities=15% Similarity=0.150 Sum_probs=185.0
Q ss_pred CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHH
Q 013778 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 99 (436)
Q Consensus 20 ~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 99 (436)
.+..++++++++|||||||.+++++++..+.. .+.+++|++||++|+.|+++.+..+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~----- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF----- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc-----
Confidence 34568999999999999999998888876654 3458999999999999999887733 222211111
Q ss_pred HHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcC-------CCcccCCccEEEEehhhHHhhHhHhhh
Q 013778 100 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLVVDETDRLLREAYQAW 172 (436)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~-------~~~~~~~~~~iIiDE~h~~~~~~~~~~ 172 (436)
-.++||+.+...+... ....+++++++|+||+|.+ +..+...
T Consensus 70 ------------------------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~ 118 (440)
T 1yks_A 70 ------------------------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAA 118 (440)
T ss_dssp ------------------------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHH
T ss_pred ------------------------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHH
Confidence 0245554442221110 1134788999999999988 4333322
Q ss_pred HHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecC
Q 013778 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252 (436)
Q Consensus 173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 252 (436)
...+...... ...+.+++|||+.+....+.... .+......
T Consensus 119 ~~~~~~~~~~-------------------------------------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~~ 159 (440)
T 1yks_A 119 RGWAAHRARA-------------------------------------NESATILMTATPPGTSDEFPHSN--GEIEDVQT 159 (440)
T ss_dssp HHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCCS--SCEEEEEC
T ss_pred HHHHHHHhcc-------------------------------------CCceEEEEeCCCCchhhhhhhcC--CCeeEeee
Confidence 2222222211 23478999999987655443321 11111000
Q ss_pred CccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHH
Q 013778 253 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 332 (436)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~ 332 (436)
..........+ ..+.. .++++||||++++.++.+++.|++.+ ..+..+|| .+|.++
T Consensus 160 ---------------~~~~~~~~~~~-~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~---~~v~~lhg----~~R~~~ 215 (440)
T 1yks_A 160 ---------------DIPSEPWNTGH-DWILA-DKRPTAWFLPSIRAANVMAASLRKAG---KSVVVLNR----KTFERE 215 (440)
T ss_dssp ---------------CCCSSCCSSSC-HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEECCS----SSCC--
T ss_pred ---------------ccChHHHHHHH-HHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcC---CCEEEecc----hhHHHH
Confidence 00011111111 22222 26799999999999999999999876 88999999 357789
Q ss_pred HHHHhcCCeeEEEecCCcccccCCCCCCeEEE-------------------ecCCCChhHHHHHhhhcccC-CCCceEEE
Q 013778 333 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------YDKPAYIKTYIHRAGRTARA-GQLGRCFT 392 (436)
Q Consensus 333 ~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~-------------------~~~~~s~~~~~Q~~GR~~R~-~~~g~~~~ 392 (436)
++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|+||+||+||. +++|.|++
T Consensus 216 ~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~ 294 (440)
T 1yks_A 216 YPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYY 294 (440)
T ss_dssp ------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred HhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEE
Confidence 9999999999999999999999999 999885 78899999999999999997 67899999
Q ss_pred Ee---cchhHHHHHHHHHH
Q 013778 393 LL---HKDEVKRFKKLLQK 408 (436)
Q Consensus 393 ~~---~~~~~~~~~~~~~~ 408 (436)
++ ++.+...+..+...
T Consensus 295 l~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 295 YSEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp ECSCCCCCCTTBHHHHHHH
T ss_pred EeccCChhhhhhhhhhhHH
Confidence 96 45555555544443
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.2e-36 Score=282.98 Aligned_cols=288 Identities=15% Similarity=0.181 Sum_probs=202.1
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCc-EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 2 GISSLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~-~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
|+.++.|.|. ++..++ .+++ +++.+|||||||.+++++++..+.. .+.+++|++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIF----RKKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGG----STTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHH----hcCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc---
Confidence 7788999984 444444 4555 5999999999999888888766544 44689999999999999998774
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
|..+....+.... ....+..|.++|++.+.+.+... ..+++++++|+||
T Consensus 70 ---g~~v~~~~~~~~~--------------------------~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 118 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS--------------------------DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 118 (451)
T ss_dssp ---TSCEEECCTTCSC--------------------------CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEET
T ss_pred ---Cceeeeeeccccc--------------------------cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeC
Confidence 3333322211100 01223479999999998777653 3478999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++ +..+......+...... +..+.+++|||++........
T Consensus 119 ah~~-~~~~~~~~~~~~~~~~~-------------------------------------~~~~~i~~SAT~~~~~~~~~~ 160 (451)
T 2jlq_A 119 AHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTATPPGSTDPFPQ 160 (451)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCC
T ss_pred CccC-CcchHHHHHHHHHhhcC-------------------------------------CCceEEEEccCCCccchhhhc
Confidence 9976 33333222222221111 235789999999765433322
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013778 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
.++....... ..+. ..+ .. +...+.. ..+++||||+++++++.+++.|++.+ ..+..+
T Consensus 161 ---~~~~~~~~~~---~~p~--~~~------~~----~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g---~~~~~l 218 (451)
T 2jlq_A 161 ---SNSPIEDIER---EIPE--RSW------NT----GFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQL 218 (451)
T ss_dssp ---CSSCEEEEEC---CCCS--SCC------SS----SCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEE
T ss_pred ---CCCceEecCc---cCCc--hhh------HH----HHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcC---CeEEEC
Confidence 2222221110 0000 001 01 1122222 35699999999999999999999876 788889
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEec--------------------CCCChhHHHHHhhh
Q 013778 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------------------KPAYIKTYIHRAGR 380 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~--------------------~~~s~~~~~Q~~GR 380 (436)
|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+++ .|.+..+|+||+||
T Consensus 219 h~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GR 293 (451)
T 2jlq_A 219 SRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGR 293 (451)
T ss_dssp CTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTT
T ss_pred CHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccc
Confidence 98654 57889999999999999999999999999 9999988 88999999999999
Q ss_pred cccCCC-CceEEEEecc
Q 013778 381 TARAGQ-LGRCFTLLHK 396 (436)
Q Consensus 381 ~~R~~~-~g~~~~~~~~ 396 (436)
+||.|. .|.++++...
T Consensus 294 aGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 294 IGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SSCCTTCCCEEEEECSC
T ss_pred cCCCCCCCccEEEEeCC
Confidence 999997 7888888643
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.1e-35 Score=290.09 Aligned_cols=299 Identities=14% Similarity=0.119 Sum_probs=213.2
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..+.|.|..+ ++.+..++++++.+|||||||.+++++++..+.. .+.++||++||++|+.|+.+.+.
T Consensus 170 ~~~lpiq~~~----i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa~Qi~~~l~------ 236 (618)
T 2whx_A 170 RIGEPDYEVD----EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVAAEMEEALR------ 236 (618)
T ss_dssp CCCCCCCCCC----GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred ccCCCccccC----HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHHHHHHHHhc------
Confidence 4566777553 4455678999999999999999988888877755 44689999999999999998776
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013778 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
+..+....+... .....+..+.++|.+.+.+.+... ..+++++++|+||||+
T Consensus 237 ~~~v~~~~~~l~--------------------------~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~ 288 (618)
T 2whx_A 237 GLPIRYQTPAVK--------------------------SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHF 288 (618)
T ss_dssp TSCEEECCTTSS--------------------------CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTC
T ss_pred CCceeEecccce--------------------------eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCC
Confidence 233332111100 001122367788888887665543 3478899999999998
Q ss_pred HhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhcccc
Q 013778 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 243 (436)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~ 243 (436)
+ +..+...+..+...+.. +..+.+++|||++.....+..
T Consensus 289 ~-~~~~~~~~~~i~~~l~~-------------------------------------~~~q~il~SAT~~~~~~~~~~--- 327 (618)
T 2whx_A 289 T-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTATPPGSTDPFPQ--- 327 (618)
T ss_dssp C-SHHHHHHHHHHHHHHHH-------------------------------------TSCEEEEECSSCTTCCCSSCC---
T ss_pred C-CccHHHHHHHHHHHhcc-------------------------------------cCccEEEEECCCchhhhhhhc---
Confidence 7 66666666666655421 234789999999876554333
Q ss_pred CCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccc
Q 013778 244 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 323 (436)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 323 (436)
.++..+...... + .... ..+...+.. ..+++||||+++++++.+++.|++.+ ..+..+|+.
T Consensus 328 ~~~~~~~v~~~~---~-----------~~~~-~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g---~~v~~lhg~ 388 (618)
T 2whx_A 328 SNSPIEDIEREI---P-----------ERSW-NTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQLSRK 388 (618)
T ss_dssp CSSCEEEEECCC---C-----------SSCC-SSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTT---CCEEEECTT
T ss_pred cCCceeeecccC---C-----------HHHH-HHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcC---CcEEEEChH
Confidence 122221111100 0 0000 111222222 36799999999999999999999876 788999974
Q ss_pred cchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeE--------------------EEecCCCChhHHHHHhhhccc
Q 013778 324 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV--------------------VNYDKPAYIKTYIHRAGRTAR 383 (436)
Q Consensus 324 ~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~v--------------------i~~~~~~s~~~~~Q~~GR~~R 383 (436)
+|.++++.|++|+.+|||||+++++|+|+| +++| ++++.|.+..+|+||+||+||
T Consensus 389 ----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR 463 (618)
T 2whx_A 389 ----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 463 (618)
T ss_dssp ----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCC
Confidence 688899999999999999999999999997 8887 677779999999999999999
Q ss_pred CCC-CceEEEEec---chhHHHHHHHHHH
Q 013778 384 AGQ-LGRCFTLLH---KDEVKRFKKLLQK 408 (436)
Q Consensus 384 ~~~-~g~~~~~~~---~~~~~~~~~~~~~ 408 (436)
.|. +|.+++++. +.+...+..+.+.
T Consensus 464 ~g~~~G~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 464 NPAQEDDQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp CTTCCCEEEEECSCCCCCCTTCHHHHHHH
T ss_pred CCCCCCeEEEEccCCchhhHHHHHHHHhH
Confidence 965 799999997 5555455544443
No 44
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.4e-36 Score=293.58 Aligned_cols=318 Identities=17% Similarity=0.123 Sum_probs=187.1
Q ss_pred cccchhHHHHHhhhCCCCCC-CcEEEECCCCchHHHHhHHHHHHHHHHhh-----cCCccEEEEcCCHHHHHHHH-HHHH
Q 013778 5 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVK-DVFA 77 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~-~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~lil~P~~~l~~q~~-~~~~ 77 (436)
.|++||.++++.++..+..+ +++++++|||+|||++++..+...+..+. ..+.++||++|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 69999999999988765555 56899999999999997665554443320 14568999999999999998 6666
Q ss_pred HhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC---CcccCCcc
Q 013778 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR---GFTLEHLC 154 (436)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~---~~~~~~~~ 154 (436)
.+ +..+..+.++. ...+.+|+|+||++|........ .+....++
T Consensus 258 ~~----~~~~~~~~~~~-----------------------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~ 304 (590)
T 3h1t_A 258 PF----GDARHKIEGGK-----------------------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFD 304 (590)
T ss_dssp TT----CSSEEECCC-------------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCS
T ss_pred hc----chhhhhhhccC-----------------------------CCCCCcEEEEEhhhhccccccccccccCCCCccC
Confidence 55 33333333221 12345999999999987654211 23466799
Q ss_pred EEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013778 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 155 ~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
+||+||||++..... ..+..++..+. ..+.+++|||+...
T Consensus 305 lvIiDEaH~~~~~~~-~~~~~il~~~~---------------------------------------~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 305 LIIIDECHRGSARDN-SNWREILEYFE---------------------------------------PAFQIGMTATPLRE 344 (590)
T ss_dssp EEEESCCC----------CHHHHHHST---------------------------------------TSEEEEEESSCSCT
T ss_pred EEEEECCccccccch-HHHHHHHHhCC---------------------------------------cceEEEeccccccc
Confidence 999999999865421 22233333331 12468999998754
Q ss_pred chhhhccccCCce------------------eeecCCcccc--C----------Cccccceeeecc-------CcCcHHH
Q 013778 235 PNKLAQLDLHHPL------------------FLTTGETRYK--L----------PERLESYKLICE-------SKLKPLY 277 (436)
Q Consensus 235 ~~~~~~~~~~~~~------------------~~~~~~~~~~--~----------~~~~~~~~~~~~-------~~~~~~~ 277 (436)
........+..+. .......... . ...+........ ...+...
T Consensus 345 ~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 424 (590)
T 3h1t_A 345 DNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDA 424 (590)
T ss_dssp TTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHH
T ss_pred cchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHH
Confidence 3221111111111 1000000000 0 000000000000 0001111
Q ss_pred ----HHHHHHh-cCCCcEEEEcCCchhHHHHHHHHhhhccc-----ceeEEEeccccchHHHHHHHHHHhcCCee---EE
Q 013778 278 ----LVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VL 344 (436)
Q Consensus 278 ----l~~~l~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vl 344 (436)
+.+.++. ...+++||||+++++|+.+++.|++.+.. ...+..+||.++. +|.+++++|++|+.+ ||
T Consensus 425 i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~il 503 (590)
T 3h1t_A 425 FAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVIL 503 (590)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEE
T ss_pred HHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEE
Confidence 2222333 24579999999999999999999876421 1236778888764 799999999998766 88
Q ss_pred EecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCC---CceEEEEecc
Q 013778 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ---LGRCFTLLHK 396 (436)
Q Consensus 345 v~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~---~g~~~~~~~~ 396 (436)
++|+++++|+|+|++++||+++.++|+..|+|++||++|.+. +..++++...
T Consensus 504 vtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 504 TTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp EESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred EECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 899999999999999999999999999999999999999874 3444444333
No 45
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6.4e-35 Score=299.47 Aligned_cols=364 Identities=16% Similarity=0.147 Sum_probs=218.6
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..|+|||.+++..++... +.++|++++||+|||++++..+...+..+ ...++|||+|+ .|+.||.+++..++
T Consensus 152 ~~LrpyQ~eav~~~l~~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~g--~~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRH--APRVLLADEVGLGKTIEAGMILHQQLLSG--AAERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSS--SCEEEECCCTTSCHHHHHHHHHHHHHHTS--SCCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHhc--CCCEEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 369999999999887632 56799999999999999877777665543 34479999999 99999999998776
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013778 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
++.+..+.++........ . .......+|+|+|++.+.........+...++++||+||||+
T Consensus 224 ~l~v~v~~~~~~~~~~~~-~------------------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHD-A------------------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp CCCCEECCHHHHHHHHHT-T------------------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred CCCEEEEccchhhhhhhh-c------------------ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 566666655432211100 0 011224589999999886533222223456799999999999
Q ss_pred HhhHhHh-----hhHHHHHh-----hcccccccc--ccccccc----cccccccccccc------------------c--
Q 013778 164 LLREAYQ-----AWLPTVLQ-----LTRSDNENR--FSDASTF----LPSAFGSLKTIR------------------R-- 207 (436)
Q Consensus 164 ~~~~~~~-----~~~~~i~~-----~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~------------------~-- 207 (436)
+...... ..+..+.. .+.+++|.. ..+.... .+..+....... .
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~ 364 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNK 364 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred hcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCC
Confidence 8543321 22333321 111222211 0000000 000000000000 0
Q ss_pred --cccccccCCCCc-cceeeeeeccccccC---------chhhhccccCCceeee-cCCccccC----------------
Q 013778 208 --CGVERGFKDKPY-PRLVKMVLSATLTQD---------PNKLAQLDLHHPLFLT-TGETRYKL---------------- 258 (436)
Q Consensus 208 --~~~~~~~~~~~~-~~~~~i~~sat~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~---------------- 258 (436)
......+..... .....++........ ...+..........+. .+......
T Consensus 365 ~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~ 444 (968)
T 3dmq_A 365 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQY 444 (968)
T ss_dssp CCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHH
T ss_pred CCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHH
Confidence 000000000000 000000000000000 0000000000000000 00000000
Q ss_pred -------------------------Ccc-ccc----eeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh
Q 013778 259 -------------------------PER-LES----YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308 (436)
Q Consensus 259 -------------------------~~~-~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~ 308 (436)
+.. ... .........|...+.++++...++++||||+++..++.+++.|+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~ 524 (968)
T 3dmq_A 445 QTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLR 524 (968)
T ss_dssp HHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHH
Confidence 000 000 00112234577788888888788999999999999999999998
Q ss_pred h-hcccceeEEEeccccchHHHHHHHHHHhcCC--eeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCC
Q 013778 309 H-FGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 385 (436)
Q Consensus 309 ~-~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 385 (436)
+ .+ +.+..+||+|+..+|..+++.|++|+ ++|||+|+++++|+|+|++++||++++|+++..|.|++||++|.|
T Consensus 525 ~~~g---~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 525 EREG---IRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp TTTC---CCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSS
T ss_pred HHcC---CcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCC
Confidence 5 35 88999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecch
Q 013778 386 QLGRCFTLLHKD 397 (436)
Q Consensus 386 ~~g~~~~~~~~~ 397 (436)
+.+.|+++....
T Consensus 602 q~~~v~v~~~~~ 613 (968)
T 3dmq_A 602 QAHDIQIHVPYL 613 (968)
T ss_dssp SCSCCEEEEEEE
T ss_pred CCceEEEEEecC
Confidence 988777775443
No 46
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.3e-33 Score=274.43 Aligned_cols=368 Identities=18% Similarity=0.160 Sum_probs=247.7
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+ .|++.|..++..++. |+ |..++||+|||+++.+|++.... .+..++|++||+.|+.|.++++..++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~----G~--Iaem~TGeGKTLa~~LP~~l~aL----~g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHL----GN--VAEMKTGEGKTLTCVLPAYLNAL----AGNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHT----TE--EEECCTTSCHHHHTHHHHHHHHT----TTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhc----CC--EEEecCCCccHHHHHHHHHHHHH----hCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 367 899999999887763 44 99999999999999999864333 23479999999999999999999999
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCC-----CcccCCcc
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 154 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~-----~~~~~~~~ 154 (436)
...|+.+.++.|+.+..... ...+++|+++||+.| ++++..+. .+.++.+.
T Consensus 177 ~~lGLsv~~i~gg~~~~~r~-----------------------~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~ 233 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDERR-----------------------VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHH 233 (922)
T ss_dssp HHTTCCEEECCTTCCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCC
T ss_pred hhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCC
Confidence 99999999999987643321 122469999999999 67776542 25678899
Q ss_pred EEEEehhhHHhh----------------HhHhhhHHHHHhhccc---------cccc------------------ccccc
Q 013778 155 YLVVDETDRLLR----------------EAYQAWLPTVLQLTRS---------DNEN------------------RFSDA 191 (436)
Q Consensus 155 ~iIiDE~h~~~~----------------~~~~~~~~~i~~~~~~---------~~~~------------------~~~~~ 191 (436)
++|+||||.++. .+++..+..+...+.. .... .|+..
T Consensus 234 ~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat 313 (922)
T 1nkt_A 234 YAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAA 313 (922)
T ss_dssp EEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCST
T ss_pred EEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCc
Confidence 999999999984 2466777777777642 0000 01100
Q ss_pred cccccccc----cccc-------ccccccc---ccccCCCCc------------------------------------c-
Q 013778 192 STFLPSAF----GSLK-------TIRRCGV---ERGFKDKPY------------------------------------P- 220 (436)
Q Consensus 192 ~~~~~~~~----~~~~-------~~~~~~~---~~~~~~~~~------------------------------------~- 220 (436)
...+.... .... .+-..+. ...+..... +
T Consensus 314 ~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr 393 (922)
T 1nkt_A 314 NSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFR 393 (922)
T ss_dssp TCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHH
Confidence 00000000 0000 0000000 000000000 0
Q ss_pred -ceeeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc--CCCcEEEEcCCc
Q 013778 221 -RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSV 297 (436)
Q Consensus 221 -~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~ 297 (436)
-.+...+|+|......++...+..+...++. ..+..... ....+......|...+...+... .+.++||||+|+
T Consensus 394 ~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPt--n~p~~R~d-~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Si 470 (922)
T 1nkt_A 394 LYDKLAGMTGTAQTEAAELHEIYKLGVVSIPT--NMPMIRED-QSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSV 470 (922)
T ss_dssp TSSEEEEEESCCGGGHHHHHHHHCCEEEECCC--SSCCCCEE-CCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred hhhhhhccccCchhHHHHHHHHhCCCeEEeCC--CCCccccc-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCH
Confidence 0123455666644333333333222222221 11111111 11223334455666666666432 456899999999
Q ss_pred hhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCC------------------
Q 013778 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV------------------ 359 (436)
Q Consensus 298 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~------------------ 359 (436)
+.++.+++.|++.+ +++..+|+.+...++..+.++|+.| .|+|+|+++++|+|++..
T Consensus 471 e~sE~Ls~~L~~~G---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~ 545 (922)
T 1nkt_A 471 ERSEYLSRQFTKRR---IPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDP 545 (922)
T ss_dssp HHHHHHHHHHHHTT---CCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccc
Confidence 99999999999887 8899999998877777777888887 799999999999999964
Q ss_pred ----------------------------------CeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhH------
Q 013778 360 ----------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV------ 399 (436)
Q Consensus 360 ----------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~------ 399 (436)
.+||.++.|.|...|.|++||+||.|.+|.+.+|++..|.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~ 625 (922)
T 1nkt_A 546 VETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFN 625 (922)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhh
Confidence 4899999999999999999999999999999999987653
Q ss_pred -HHHHHHHHHhc
Q 013778 400 -KRFKKLLQKAD 410 (436)
Q Consensus 400 -~~~~~~~~~~~ 410 (436)
+++..+++.+.
T Consensus 626 ~~~~~~~~~~~~ 637 (922)
T 1nkt_A 626 GAALETLLTRLN 637 (922)
T ss_dssp HHHHHHHHHHTT
T ss_pred hHHHHHHHHHhC
Confidence 34556666653
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=5.1e-35 Score=283.89 Aligned_cols=355 Identities=17% Similarity=0.157 Sum_probs=231.2
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013778 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
|. .|++.|..++..++. |+ +..++||+|||+++.+|++.... .+..++|++||+.|+.|.++++..++.
T Consensus 72 g~-~p~~VQ~~~i~~ll~----G~--Iaem~TGsGKTlaf~LP~l~~~l----~g~~vlVltPTreLA~Q~~e~~~~l~~ 140 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNE----RC--IAEMRTGEGKTLTATLPAYLNAL----TGKGVHVVTVNDYLAQRDAENNRPLFE 140 (853)
T ss_dssp SC-CCCHHHHHHHHHHHS----SE--EEECCTTSCHHHHHHHHHHHHHT----TSSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccC----Ce--eeeecCCchHHHHHHHHHHHHHH----cCCcEEEEcCCHHHHHHHHHHHHHHHH
Confidence 44 799999999887664 44 99999999999999999885432 345799999999999999999999999
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCC-----CcccCCccE
Q 013778 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCY 155 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~-----~~~~~~~~~ 155 (436)
..|+.+.++.|+.+..... ...+++|+|+||+.| ++++..+. ...++++.+
T Consensus 141 ~lgl~v~~i~GG~~~~~r~-----------------------~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~ 197 (853)
T 2fsf_A 141 FLGLTVGINLPGMPAPAKR-----------------------EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHY 197 (853)
T ss_dssp HTTCCEEECCTTCCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCE
T ss_pred hcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcE
Confidence 9999999999997643221 222469999999999 67776543 245789999
Q ss_pred EEEehhhHHhh-Hh---------------HhhhHHHHHhhccccc-------------------cc--------------
Q 013778 156 LVVDETDRLLR-EA---------------YQAWLPTVLQLTRSDN-------------------EN-------------- 186 (436)
Q Consensus 156 iIiDE~h~~~~-~~---------------~~~~~~~i~~~~~~~~-------------------~~-------------- 186 (436)
+|+||||.++. .+ ++..+..++..+.... ..
T Consensus 198 lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~ 277 (853)
T 2fsf_A 198 ALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEEL 277 (853)
T ss_dssp EEESCHHHHTTTTTTCEEEEEEC---------------------------------------------------------
T ss_pred EEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHH
Confidence 99999999983 22 3444555555443200 00
Q ss_pred ------------ccccccccccccc----ccccccc-------cccc---------------------------ccccCC
Q 013778 187 ------------RFSDASTFLPSAF----GSLKTIR-------RCGV---------------------------ERGFKD 216 (436)
Q Consensus 187 ------------~~~~~~~~~~~~~----~~~~~~~-------~~~~---------------------------~~~~~~ 216 (436)
.|+.....+.... .....+. ..+. +..+.-
T Consensus 278 l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I 357 (853)
T 2fsf_A 278 LVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQI 357 (853)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhccccee
Confidence 0000000000000 0000000 0000 000000
Q ss_pred CC------------cc--ceeeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHH
Q 013778 217 KP------------YP--RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 282 (436)
Q Consensus 217 ~~------------~~--~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (436)
.. ++ -.+...+|+|......++...+..+...++ ...+..... ....+......|...+...+
T Consensus 358 ~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IP--tn~p~~R~d-~~d~v~~~~~~K~~al~~~i 434 (853)
T 2fsf_A 358 QNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVP--TNRPMIRKD-LPDLVYMTEAEKIQAIIEDI 434 (853)
T ss_dssp CCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECC--CSSCCCCEE-CCCEEESSHHHHHHHHHHHH
T ss_pred cccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcC--CCCCceeec-CCcEEEeCHHHHHHHHHHHH
Confidence 00 00 012345566665444333333322222222 111111111 11223344556777777766
Q ss_pred Hh-c-CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCC-
Q 013778 283 QS-L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV- 359 (436)
Q Consensus 283 ~~-~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~- 359 (436)
.. + .+.++||||+|++.++.+++.|++.+ +++..+|+.+...++..+.++|+.| .|+|+|+++++|+|++..
T Consensus 435 ~~~~~~gqpvLVft~sie~se~Ls~~L~~~g---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~g 509 (853)
T 2fsf_A 435 KERTAKGQPVLVGTISIEKSELVSNELTKAG---IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGG 509 (853)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHTT---CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTC
T ss_pred HHHhcCCCCEEEEECcHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCC
Confidence 54 2 46689999999999999999999887 8899999999888888888889888 799999999999999863
Q ss_pred ------------------------------------CeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchh
Q 013778 360 ------------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 360 ------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
.+||.++.|.|...|.|++||+||.|++|.+++|++..|
T Consensus 510 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 510 SWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp CHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred chHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 589999999999999999999999999999999998765
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.5e-35 Score=289.24 Aligned_cols=294 Identities=14% Similarity=0.171 Sum_probs=197.3
Q ss_pred cccchhH-----HHHHhhh--CCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013778 5 SLFPVQV-----AVWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 5 ~~~~~Q~-----~a~~~~~--~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
.|++.|. +++..++ ..+..++++++.+|||||||.+++++++..+.. .+.+++|++||++|+.|+++.+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEccHHHHHHHHHHHHh
Confidence 8999998 5544333 111268999999999999999998888877654 44689999999999999998777
Q ss_pred HhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013778 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
.+ ++ ....+.... ....+.-+-+.+.+.+.+.+... ..+++++++|
T Consensus 292 ~~----~i--~~~~~~l~~--------------------------v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l~lvV 337 (673)
T 2wv9_A 292 GL----PV--RYLTPAVQR--------------------------EHSGNEIVDVMCHATLTHRLMSP--LRVPNYNLFV 337 (673)
T ss_dssp TS----CC--EECCC---C--------------------------CCCSCCCEEEEEHHHHHHHHHSS--SCCCCCSEEE
T ss_pred cC----Ce--eeecccccc--------------------------cCCHHHHHHHHHhhhhHHHHhcc--cccccceEEE
Confidence 43 22 111111000 00111134445555554444432 3578999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013778 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||+|++ +..+......+...... ...+.+++|||+.+....
T Consensus 338 iDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~vl~~SAT~~~~i~~ 379 (673)
T 2wv9_A 338 MDEAHFT-DPASIAARGYIATRVEA-------------------------------------GEAAAIFMTATPPGTSDP 379 (673)
T ss_dssp EESTTCC-CHHHHHHHHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCS
T ss_pred EeCCccc-CccHHHHHHHHHHhccc-------------------------------------cCCcEEEEcCCCChhhhh
Confidence 9999987 22222222222222110 224789999999876544
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeE
Q 013778 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 317 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~ 317 (436)
+... ..+....... .........+ ..+.. ..+++||||++++.++.+++.|++.+ ..+
T Consensus 380 ~~~~--~~~i~~v~~~---------------~~~~~~~~~l-~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g---~~v 437 (673)
T 2wv9_A 380 FPDT--NSPVHDVSSE---------------IPDRAWSSGF-EWITD-YAGKTVWFVASVKMSNEIAQCLQRAG---KRV 437 (673)
T ss_dssp SCCC--SSCEEEEECC---------------CCSSCCSSCC-HHHHS-CCSCEEEECSSHHHHHHHHHHHHTTT---CCE
T ss_pred hccc--CCceEEEeee---------------cCHHHHHHHH-HHHHh-CCCCEEEEECCHHHHHHHHHHHHhCC---CeE
Confidence 3321 1111110000 0001111111 22222 47799999999999999999999875 889
Q ss_pred EEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEE--------------------ecCCCChhHHHHH
Q 013778 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN--------------------YDKPAYIKTYIHR 377 (436)
Q Consensus 318 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~--------------------~~~~~s~~~~~Q~ 377 (436)
..+||. +|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|+||
T Consensus 438 ~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr 512 (673)
T 2wv9_A 438 IQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQR 512 (673)
T ss_dssp EEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHH
T ss_pred EEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHH
Confidence 999983 788999999999999999999999999999 999997 5578899999999
Q ss_pred hhhcccC-CCCceEEEEe---cchhHH
Q 013778 378 AGRTARA-GQLGRCFTLL---HKDEVK 400 (436)
Q Consensus 378 ~GR~~R~-~~~g~~~~~~---~~~~~~ 400 (436)
+||+||. ++.|.|++++ ...+..
T Consensus 513 ~GRaGR~~g~~G~ai~l~~~~~~~d~~ 539 (673)
T 2wv9_A 513 RGRVGRNPSQIGDEYHYGGGTSEDDTM 539 (673)
T ss_dssp HTTSSCCSSCCCEEEEECSCCCCCCTT
T ss_pred hhccCCCCCCCCEEEEEEecCChhHHH
Confidence 9999998 6789999996 444443
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.8e-34 Score=274.19 Aligned_cols=270 Identities=17% Similarity=0.220 Sum_probs=188.6
Q ss_pred CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHH
Q 013778 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 100 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (436)
+..++++++.+|||+|||.+++++++..+.. .+.++||++|+++|+.|+++.+. |..+....+.....
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~--- 85 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE--- 85 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC---------
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC---
Confidence 4457899999999999999988998877654 44689999999999999998876 33333322221100
Q ss_pred HHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH-----hhHhHhhhHHH
Q 013778 101 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-----LREAYQAWLPT 175 (436)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~-----~~~~~~~~~~~ 175 (436)
...+..+.++|.+.+.+.+... ..+++++++|+||||.+ ...++. ..
T Consensus 86 -----------------------~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~---~~ 137 (459)
T 2z83_A 86 -----------------------HQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYI---AT 137 (459)
T ss_dssp -------------------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHH---HH
T ss_pred -----------------------CCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHH---HH
Confidence 0122357788888887666543 44789999999999973 222221 11
Q ss_pred HHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCcc
Q 013778 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255 (436)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (436)
... . +..+.+++|||++.....+... ..|.......
T Consensus 138 ~~~---~-------------------------------------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~~-- 173 (459)
T 2z83_A 138 KVE---L-------------------------------------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQDE-- 173 (459)
T ss_dssp HHH---T-------------------------------------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC--
T ss_pred Hhc---c-------------------------------------CCccEEEEEcCCCcchhhhccC--CCCeEEeccc--
Confidence 110 0 2347899999998765443322 2232221100
Q ss_pred ccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHH
Q 013778 256 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 335 (436)
.+. ...... ...+.. ..+++||||++++.++.+++.|++.+ ..+..+|+. +|..+++.
T Consensus 174 --~~~--------~~~~~~----~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g---~~v~~lh~~----~R~~~~~~ 231 (459)
T 2z83_A 174 --IPD--------RAWSSG----YEWITE-YAGKTVWFVASVKMGNEIAMCLQRAG---KKVIQLNRK----SYDTEYPK 231 (459)
T ss_dssp --CCS--------SCCSSC----CHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEEESTT----CCCCCGGG
T ss_pred --CCc--------chhHHH----HHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcC---CcEEecCHH----HHHHHHhh
Confidence 000 000111 122332 26799999999999999999999876 888899984 56778999
Q ss_pred HhcCCeeEEEecCCcccccCCCCCCeEEE--------------------ecCCCChhHHHHHhhhcccCCC-CceEEEEe
Q 013778 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVN--------------------YDKPAYIKTYIHRAGRTARAGQ-LGRCFTLL 394 (436)
Q Consensus 336 f~~g~~~vlv~t~~~~~Gidi~~~~~vi~--------------------~~~~~s~~~~~Q~~GR~~R~~~-~g~~~~~~ 394 (436)
|++|+.+|||||+++++|+|+|+ +.||+ ++.|.|..+|+||+||+||.|. +|.+++++
T Consensus 232 f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~ 310 (459)
T 2z83_A 232 CKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYG 310 (459)
T ss_dssp SSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEE
Confidence 99999999999999999999999 99998 6689999999999999999987 89999998
Q ss_pred cch
Q 013778 395 HKD 397 (436)
Q Consensus 395 ~~~ 397 (436)
...
T Consensus 311 ~~~ 313 (459)
T 2z83_A 311 GAT 313 (459)
T ss_dssp SCC
T ss_pred ccc
Confidence 764
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.5e-34 Score=279.16 Aligned_cols=272 Identities=18% Similarity=0.266 Sum_probs=194.4
Q ss_pred hhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcc
Q 013778 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 95 (436)
Q Consensus 16 ~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~ 95 (436)
.+...+..++++++.+|||+|||.++.+++++ .+.+++|++|+++|+.|+++.+.+.+ +..+....|+..
T Consensus 224 ~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~ 293 (666)
T 3o8b_A 224 SPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT 293 (666)
T ss_dssp SCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE
T ss_pred HHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe
Confidence 34455556789999999999999887776664 34489999999999999998776554 556666666643
Q ss_pred hhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHH
Q 013778 96 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175 (436)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 175 (436)
...+.+|+|+||++|+ .. ..+.+++++++|+||||.+ +..+...+..
T Consensus 294 ----------------------------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~ 340 (666)
T 3o8b_A 294 ----------------------------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHST-DSTTILGIGT 340 (666)
T ss_dssp ----------------------------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTCC-SHHHHHHHHH
T ss_pred ----------------------------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchhc-CccHHHHHHH
Confidence 1234599999999983 22 3467888999999999854 5666666666
Q ss_pred HHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCcc
Q 013778 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255 (436)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (436)
+.+....... ...+++|||++.... ...+.........
T Consensus 341 Il~~l~~~~~------------------------------------~llil~SAT~~~~i~------~~~p~i~~v~~~~ 378 (666)
T 3o8b_A 341 VLDQAETAGA------------------------------------RLVVLATATPPGSVT------VPHPNIEEVALSN 378 (666)
T ss_dssp HHHHTTTTTC------------------------------------SEEEEEESSCTTCCC------CCCTTEEEEECBS
T ss_pred HHHhhhhcCC------------------------------------ceEEEECCCCCcccc------cCCcceEEEeecc
Confidence 6666533111 124677999976422 1111111100000
Q ss_pred ccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHH
Q 013778 256 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 335 (436)
......+ ..... +.....+++||||++++.++.+++.|++.+ +.+..+||+++..+
T Consensus 379 ---~~~i~~~----~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g---~~v~~lHG~l~q~e------- 434 (666)
T 3o8b_A 379 ---TGEIPFY----GKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLG---INAVAYYRGLDVSV------- 434 (666)
T ss_dssp ---CSSEEET----TEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECTTSCGGG-------
T ss_pred ---cchhHHH----Hhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCC---CcEEEecCCCCHHH-------
Confidence 0000000 00000 123357899999999999999999999876 88999999999865
Q ss_pred HhcCCeeEEEecCCcccccCCCCCCeEE----------Eec-----------CCCChhHHHHHhhhcccCCCCceEEEEe
Q 013778 336 FREGKIQVLVSSDAMTRGMDVEGVNNVV----------NYD-----------KPAYIKTYIHRAGRTARAGQLGRCFTLL 394 (436)
Q Consensus 336 f~~g~~~vlv~t~~~~~Gidi~~~~~vi----------~~~-----------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 394 (436)
|.++..+|||+|+++++|+|+| +++|| +++ .|.+..+|+||+||+|| +++|. +.|+
T Consensus 435 r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lv 511 (666)
T 3o8b_A 435 IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFV 511 (666)
T ss_dssp SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEES
T ss_pred HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEE
Confidence 4556679999999999999997 99888 455 78899999999999999 88899 8888
Q ss_pred cchhH
Q 013778 395 HKDEV 399 (436)
Q Consensus 395 ~~~~~ 399 (436)
.+.+.
T Consensus 512 t~~e~ 516 (666)
T 3o8b_A 512 TPGER 516 (666)
T ss_dssp CCCCB
T ss_pred ecchh
Confidence 77654
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=6.1e-34 Score=268.35 Aligned_cols=269 Identities=13% Similarity=0.125 Sum_probs=186.4
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (436)
++++++++|||+|||.++++++++.+.. .+.+++|++||++|+.|+.+.+. +..+....+.....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~~------ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQSE------ 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcccc------
Confidence 6899999999999999998888855543 44589999999999999887765 45555555442110
Q ss_pred hccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHHHHhhcccc
Q 013778 104 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183 (436)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~ 183 (436)
...+..+.++|.+.+.+.+.. ...+++++++|+||+|++ +..+......+......
T Consensus 67 --------------------~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~- 122 (431)
T 2v6i_A 67 --------------------RTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM- 122 (431)
T ss_dssp ----------------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT-
T ss_pred --------------------CCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC-
Confidence 111235677788888766555 244789999999999987 44333333333333211
Q ss_pred cccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCccccCCcccc
Q 013778 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 263 (436)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (436)
+..+.+++|||+.+....+... ..+.......
T Consensus 123 ------------------------------------~~~~~l~~SAT~~~~~~~~~~~--~~~i~~~~~~---------- 154 (431)
T 2v6i_A 123 ------------------------------------GDAGAIFMTATPPGTTEAFPPS--NSPIIDEETR---------- 154 (431)
T ss_dssp ------------------------------------TSCEEEEEESSCTTCCCSSCCC--SSCCEEEECC----------
T ss_pred ------------------------------------CCCcEEEEeCCCCcchhhhcCC--CCceeecccc----------
Confidence 2347899999998754433321 1111110000
Q ss_pred ceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeE
Q 013778 264 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343 (436)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 343 (436)
.. ..+...+.+.+.. ..+++||||+++++++.+++.|++.+ ..+..+||+ +|.++++.|++|+.+|
T Consensus 155 -----~~-~~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~---~~v~~lhg~----~r~~~~~~f~~g~~~v 220 (431)
T 2v6i_A 155 -----IP-DKAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAG---KKVLYLNRK----TFESEYPKCKSEKWDF 220 (431)
T ss_dssp -----CC-SSCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTT---CCEEEESTT----THHHHTTHHHHSCCSE
T ss_pred -----CC-HHHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcC---CeEEEeCCc----cHHHHHHhhcCCCCeE
Confidence 00 0011112233333 36689999999999999999999875 889999986 5778999999999999
Q ss_pred EEecCCcccccCCCCCCe-----------------EEEecCCCChhHHHHHhhhcccCCCC-ceEEEEe
Q 013778 344 LVSSDAMTRGMDVEGVNN-----------------VVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLL 394 (436)
Q Consensus 344 lv~t~~~~~Gidi~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~~ 394 (436)
||||+++++|+|+| +.. +++++.|.+..+|.|++||+||.|.. +.++++.
T Consensus 221 LVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 221 VITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999 544 56778889999999999999998854 5555554
No 52
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.4e-34 Score=287.58 Aligned_cols=317 Identities=17% Similarity=0.213 Sum_probs=216.5
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..|.+.|.+++..++. .++++++.+|||+|||...-..++...... ..+.++++++|++.++.|+++.+....
T Consensus 92 ~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTtllp~ll~~~~~~~-~~g~~ilvl~P~r~La~q~~~~l~~~~--- 164 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTTQIPQFVLFDEMPH-LENTQVACTQPRRVAAMSVAQRVAEEM--- 164 (773)
T ss_dssp TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHHHHHHCGG-GGTCEEEEEESCHHHHHHHHHHHHHHT---
T ss_pred cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHHHHHHHHhcccc-CCCceEEecCchHHHHHHHHHHHHHHh---
Confidence 3577889888887775 467899999999999984222222111111 124579999999999999988765543
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013778 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
+..+...+|....... ....+.+|+++||+.+.+.+... ..+.++++||+||+|.
T Consensus 165 ~~~v~~~vG~~i~~~~-----------------------~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 165 DVKLGEEVGYSIRFEN-----------------------KTSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAHE 219 (773)
T ss_dssp TCCBTTTEEEEETTEE-----------------------ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGGG
T ss_pred CCchhheecceecccc-----------------------ccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCccc
Confidence 3333222222110000 01234589999999998877653 3488999999999996
Q ss_pred -HhhH-hHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhcc
Q 013778 164 -LLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241 (436)
Q Consensus 164 -~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 241 (436)
.++. .....+..+.... +..+.+++|||+. ...+...
T Consensus 220 R~ld~d~~~~~l~~l~~~~---------------------------------------~~~~iIl~SAT~~--~~~l~~~ 258 (773)
T 2xau_A 220 RTLATDILMGLLKQVVKRR---------------------------------------PDLKIIIMSATLD--AEKFQRY 258 (773)
T ss_dssp CCHHHHHHHHHHHHHHHHC---------------------------------------TTCEEEEEESCSC--CHHHHHH
T ss_pred cccchHHHHHHHHHHHHhC---------------------------------------CCceEEEEecccc--HHHHHHH
Confidence 3332 2233344443322 2347899999994 3333333
Q ss_pred ccCCceeeecCCccccCCccccceeeeccCcCcH----HHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhh-------
Q 013778 242 DLHHPLFLTTGETRYKLPERLESYKLICESKLKP----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF------- 310 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~------- 310 (436)
....+.+ ....... ++..+.......... ..+..+......+++||||+++++++.+++.|++.
T Consensus 259 ~~~~~vi-~v~gr~~----pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~ 333 (773)
T 2xau_A 259 FNDAPLL-AVPGRTY----PVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVRE 333 (773)
T ss_dssp TTSCCEE-ECCCCCC----CEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcc-cccCccc----ceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhccc
Confidence 3223332 2222111 122222222222222 22233333446789999999999999999999851
Q ss_pred -cccceeEEEeccccchHHHHHHHHHHh-----cCCeeEEEecCCcccccCCCCCCeEEEecC-----------------
Q 013778 311 -GELRIKIKEYSGLQRQSVRSKTLKAFR-----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDK----------------- 367 (436)
Q Consensus 311 -~~~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~----------------- 367 (436)
...+..+..+||+++..+|..+++.|. +|..+|||||+++++|+|+|++++||.++.
T Consensus 334 ~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~ 413 (773)
T 2xau_A 334 EGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLV 413 (773)
T ss_dssp HCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEE
T ss_pred ccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCcccccc
Confidence 224578999999999999999999999 999999999999999999999999999776
Q ss_pred -CCChhHHHHHhhhcccCCCCceEEEEecchhH
Q 013778 368 -PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 368 -~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
|.|..+|.||+||+||. .+|.|+.+++..+.
T Consensus 414 ~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 414 SPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred ccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 78999999999999998 68999999987665
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.1e-33 Score=271.80 Aligned_cols=311 Identities=17% Similarity=0.230 Sum_probs=204.6
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|+|||.++++.+......+.++++.++||+|||++++..+......+ ...++||++|+ .|+.||.+++.++++ +
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~--~~~~~LIv~P~-~l~~qw~~e~~~~~~--~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN--ELTPSLVICPL-SVLKNWEEELSKFAP--H 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT--CCSSEEEEECS-TTHHHHHHHHHHHCT--T
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC--CCCCEEEEccH-HHHHHHHHHHHHHCC--C
Confidence 699999999877653333568899999999999998766555433222 44589999995 689999999999876 3
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013778 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
..+..+.|+.... .....+|+|+||+.+.+... +....+++||+||||++
T Consensus 112 ~~v~~~~g~~~~~--------------------------~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~ 161 (500)
T 1z63_A 112 LRFAVFHEDRSKI--------------------------KLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNI 161 (500)
T ss_dssp SCEEECSSSTTSC--------------------------CGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGG
T ss_pred ceEEEEecCchhc--------------------------cccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCcccc
Confidence 5566666654210 11234899999999865432 23446899999999998
Q ss_pred hhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch-hhhc---
Q 013778 165 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-KLAQ--- 240 (436)
Q Consensus 165 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~-~~~~--- 240 (436)
.+... .....+..+. ....+++||||..... ++..
T Consensus 162 kn~~~--~~~~~l~~l~---------------------------------------~~~~l~LTaTP~~n~~~el~~ll~ 200 (500)
T 1z63_A 162 KNPQT--KIFKAVKELK---------------------------------------SKYRIALTGTPIENKVDDLWSIMT 200 (500)
T ss_dssp SCTTS--HHHHHHHTSC---------------------------------------EEEEEEECSSCSTTCHHHHHHHHH
T ss_pred CCHhH--HHHHHHHhhc---------------------------------------cCcEEEEecCCCCCCHHHHHHHHH
Confidence 54321 1112221111 1234677777744210 0000
Q ss_pred --------------------------------cccCCceeeecCCcc----ccCCccccc-------------ee-----
Q 013778 241 --------------------------------LDLHHPLFLTTGETR----YKLPERLES-------------YK----- 266 (436)
Q Consensus 241 --------------------------------~~~~~~~~~~~~~~~----~~~~~~~~~-------------~~----- 266 (436)
..+..+......... ..++..... |.
T Consensus 201 ~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~ 280 (500)
T 1z63_A 201 FLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVEN 280 (500)
T ss_dssp HHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred HhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHH
Confidence 000011111000000 000000000 00
Q ss_pred --------------------------------------eeccCcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHH
Q 013778 267 --------------------------------------LICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTL 306 (436)
Q Consensus 267 --------------------------------------~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~ 306 (436)
.......|...+.+++... .+.++||||++...++.+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~ 360 (500)
T 1z63_A 281 LFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNI 360 (500)
T ss_dssp HTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHH
Confidence 0001123445555655543 577999999999999999999
Q ss_pred Hhhh-cccceeEEEeccccchHHHHHHHHHHhcC-Cee-EEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhccc
Q 013778 307 LNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 383 (436)
Q Consensus 307 l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R 383 (436)
|.+. + ..+..+||+++..+|.++++.|++| +.+ +|++|.++++|+|+|.+++||++++|+++..+.|++||++|
T Consensus 361 l~~~~~---~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R 437 (500)
T 1z63_A 361 IEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYR 437 (500)
T ss_dssp HHHHHT---CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTT
T ss_pred HHHhhC---CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHH
Confidence 9874 5 6788899999999999999999998 565 78999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEe
Q 013778 384 AGQLGRCFTLL 394 (436)
Q Consensus 384 ~~~~g~~~~~~ 394 (436)
.|+.+.+.++.
T Consensus 438 ~Gq~~~v~v~~ 448 (500)
T 1z63_A 438 IGQTRNVIVHK 448 (500)
T ss_dssp TTTTSCEEEEE
T ss_pred cCCCCeeEEEE
Confidence 99887765543
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.5e-32 Score=265.32 Aligned_cols=283 Identities=16% Similarity=0.165 Sum_probs=196.4
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHH
Q 013778 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 102 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 102 (436)
.+++++++||||+|||..+ +..+... .+.+|++|+++|+.|+++.+... |+.+..++|+......
T Consensus 154 ~rk~vlv~apTGSGKT~~a----l~~l~~~----~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--- 218 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHA----IQKYFSA----KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--- 218 (677)
T ss_dssp CCEEEEEECCTTSSHHHHH----HHHHHHS----SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS---
T ss_pred CCCEEEEEcCCCCCHHHHH----HHHHHhc----CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec---
Confidence 5789999999999999843 3333332 24699999999999999998876 7788888888643110
Q ss_pred hhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHHHHhhccc
Q 013778 103 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 182 (436)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~ 182 (436)
......+++++|++.+. ....++++|+||+|.+.+..+...+..++.....
T Consensus 219 --------------------TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 219 --------------------PNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp --------------------TTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred --------------------CCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 00112468888865441 2456899999999999877777666666655432
Q ss_pred ccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCccccCCccc
Q 013778 183 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (436)
...+.+++|||.. ....+.... .....+...... .+
T Consensus 270 -------------------------------------~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~--~~--- 305 (677)
T 3rc3_A 270 -------------------------------------EEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKRL--TP--- 305 (677)
T ss_dssp -------------------------------------EEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCCS--SC---
T ss_pred -------------------------------------cceEEEeccchHH-HHHHHHHhc-CCceEEEEeeec--ch---
Confidence 2346788888852 222222111 112211111000 00
Q ss_pred cceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhc--CC
Q 013778 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GK 340 (436)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~ 340 (436)
........ ..+... ..+.+|||++++.++.+++.|++.+ ..+..+||+|+..+|..+++.|++ |+
T Consensus 306 --l~~~~~~l-------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g---~~v~~lHG~L~~~~R~~~~~~F~~~~g~ 372 (677)
T 3rc3_A 306 --ISVLDHAL-------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRG---LESAVIYGSLPPGTKLAQAKKFNDPNDP 372 (677)
T ss_dssp --EEECSSCC-------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHCTTSS
T ss_pred --HHHHHHHH-------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcC---CCeeeeeccCCHHHHHHHHHHHHccCCC
Confidence 00000000 011112 3456889999999999999999875 889999999999999999999999 88
Q ss_pred eeEEEecCCcccccCCCCCCeEEEecC--------------CCChhHHHHHhhhcccCCCC---ceEEEEecchhHHHHH
Q 013778 341 IQVLVSSDAMTRGMDVEGVNNVVNYDK--------------PAYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVKRFK 403 (436)
Q Consensus 341 ~~vlv~t~~~~~Gidi~~~~~vi~~~~--------------~~s~~~~~Q~~GR~~R~~~~---g~~~~~~~~~~~~~~~ 403 (436)
.+|||||+++++|+|+ +++.||+++. |.+..+|.||+||+||.|.+ |.|+.++ ..+...+.
T Consensus 373 ~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~-~~d~~~~~ 450 (677)
T 3rc3_A 373 CKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN-HEDLSLLK 450 (677)
T ss_dssp CCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS-TTHHHHHH
T ss_pred eEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe-cchHHHHH
Confidence 9999999999999999 8999999998 77899999999999999864 6555554 34545555
Q ss_pred HHHHH
Q 013778 404 KLLQK 408 (436)
Q Consensus 404 ~~~~~ 408 (436)
+++..
T Consensus 451 ~~~~~ 455 (677)
T 3rc3_A 451 EILKR 455 (677)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 55544
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.1e-31 Score=268.47 Aligned_cols=346 Identities=20% Similarity=0.204 Sum_probs=224.2
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..|+|||.++++.++.....+.++|+..+||.|||++++..+...+.... ...++||||| ..++.||.+++..+++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P-~sll~qW~~E~~~~~p-- 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVP-LSTMPAWLDTFEKWAP-- 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECC-TTTHHHHHHHHHHHST--
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-CCCCEEEEEC-chHHHHHHHHHHHHCC--
Confidence 36999999999877655556889999999999999987666655444432 4557999999 6789999999999986
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013778 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
+..+..++|............... ...........++|+|+||+.+...... +....+++||+||||+
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~---------~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYT---------NPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHR 378 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCS---------CC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHhhc---------cccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhh
Confidence 467778888776554433221100 0000011223568999999999765433 2233688999999998
Q ss_pred HhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh-hhc--
Q 013778 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-LAQ-- 240 (436)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~-~~~-- 240 (436)
+-... ......+..+. ....+++||||...... +..
T Consensus 379 lkn~~--s~~~~~l~~l~---------------------------------------~~~rl~LTgTPiqN~l~el~~ll 417 (800)
T 3mwy_W 379 LKNAE--SSLYESLNSFK---------------------------------------VANRMLITGTPLQNNIKELAALV 417 (800)
T ss_dssp GCCSS--SHHHHHHTTSE---------------------------------------EEEEEEECSCCCSSCSHHHHHHH
T ss_pred hcCch--hHHHHHHHHhh---------------------------------------hccEEEeeCCcCCCCHHHHHHHH
Confidence 83321 11112222111 11234455554221000 000
Q ss_pred ------------------------------cccCCceeeecCCcccc--CCccccc-------------e----------
Q 013778 241 ------------------------------LDLHHPLFLTTGETRYK--LPERLES-------------Y---------- 265 (436)
Q Consensus 241 ------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~-------------~---------- 265 (436)
.....+........... ++..... |
T Consensus 418 ~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~ 497 (800)
T 3mwy_W 418 NFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSA 497 (800)
T ss_dssp HHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-
T ss_pred HHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 00000000000000000 0000000 0
Q ss_pred ---------------------------------------------------eeeccCcCcHHHHHHHHHhc--CCCcEEE
Q 013778 266 ---------------------------------------------------KLICESKLKPLYLVALLQSL--GEEKCIV 292 (436)
Q Consensus 266 ---------------------------------------------------~~~~~~~~~~~~l~~~l~~~--~~~~~lv 292 (436)
........|...+..++... .+.++||
T Consensus 498 l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLI 577 (800)
T 3mwy_W 498 LTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLI 577 (800)
T ss_dssp ---------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEE
T ss_pred HhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEE
Confidence 00001233555666666654 4679999
Q ss_pred EcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCe---eEEEecCCcccccCCCCCCeEEEecCCC
Q 013778 293 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPA 369 (436)
Q Consensus 293 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~t~~~~~Gidi~~~~~vi~~~~~~ 369 (436)
|+.....+..+.++|...+ +.+..++|+++..+|.++++.|++++. .+|++|.++++|+|++.+++||+++++|
T Consensus 578 Fsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w 654 (800)
T 3mwy_W 578 FSQMVRMLDILGDYLSIKG---INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW 654 (800)
T ss_dssp EESCHHHHHHHHHHHHHHT---CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS
T ss_pred EechHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCC
Confidence 9999999999999999876 889999999999999999999998654 5899999999999999999999999999
Q ss_pred ChhHHHHHhhhcccCCCCceEEEE--ecch--hHHHHHHHHHHh
Q 013778 370 YIKTYIHRAGRTARAGQLGRCFTL--LHKD--EVKRFKKLLQKA 409 (436)
Q Consensus 370 s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~--~~~~~~~~~~~~ 409 (436)
++..+.|++||++|.|+...|.++ +... +...++...++.
T Consensus 655 np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 655 NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 999999999999999988666554 4433 334455444444
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=4.8e-30 Score=253.53 Aligned_cols=364 Identities=17% Similarity=0.138 Sum_probs=210.5
Q ss_pred cccchhHHHHHhhhCCC-----CCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc---CCccEEEEcCCHHHHHHHHHHH
Q 013778 5 SLFPVQVAVWQETIGPG-----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~-----~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~lil~P~~~l~~q~~~~~ 76 (436)
.|+|||.++++.++... ..+.++|+..+||+|||++++..+...+...+. ...++||++|+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999998876422 345779999999999999987766665544321 12369999997 8899999999
Q ss_pred HHhhhhhCceEEEeccCcchhH--HHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCcc
Q 013778 77 AAIAPAVGLSVGLAVGQSSIAD--EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 154 (436)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~ 154 (436)
.++++. .+.+..+.++..... ....+.... ......+|+|+||+.+...... +....++
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~---------------~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~ 194 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQ---------------GMRIPTPILIISYETFRLHAEV---LHKGKVG 194 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCC---------------SSCCSCCEEEEEHHHHHHHTTT---TTTSCCC
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhc---------------CCCCCCcEEEeeHHHHHhhHHH---hhcCCcc
Confidence 999865 455555555543221 111111100 0012358999999999765433 3345789
Q ss_pred EEEEehhhHHhhHh--HhhhHHHHHh---hcccccc--cccccccccc----ccccccccc-------------------
Q 013778 155 YLVVDETDRLLREA--YQAWLPTVLQ---LTRSDNE--NRFSDASTFL----PSAFGSLKT------------------- 204 (436)
Q Consensus 155 ~iIiDE~h~~~~~~--~~~~~~~i~~---~~~~~~~--~~~~~~~~~~----~~~~~~~~~------------------- 204 (436)
+||+||||++-... ....+..+.. ...+++| +...+....+ +..++....
T Consensus 195 ~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~ 274 (644)
T 1z3i_X 195 LVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD 274 (644)
T ss_dssp EEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS
T ss_pred EEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCH
Confidence 99999999984432 1122222211 0111111 1100000000 000000000
Q ss_pred --------------------ccccccccccCCCCccceeeeeeccccccCchhhhcc-----------------------
Q 013778 205 --------------------IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL----------------------- 241 (436)
Q Consensus 205 --------------------~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~----------------------- 241 (436)
+.+.....-....+......+...-|.... .+...
T Consensus 275 ~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~--~lY~~~~~~~~~~~~~~~g~~~~~~l~~ 352 (644)
T 1z3i_X 275 KDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQK--ELYKLFLKQAKPVESLQTGKISVSSLSS 352 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHH--HHHHHHHHHHCGGGSSCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHH--HHHHHHHHHHHHHHHHhcCccchhHHHH
Confidence 000000000000111111111111111100 00000
Q ss_pred ------ccCCceeeec----CCcc-----ccCCccccceeeeccCcCcHHHHHHHHHh---cCCCcEEEEcCCchhHHHH
Q 013778 242 ------DLHHPLFLTT----GETR-----YKLPERLESYKLICESKLKPLYLVALLQS---LGEEKCIVFTSSVESTHRL 303 (436)
Q Consensus 242 ------~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~lvf~~~~~~~~~~ 303 (436)
.+.+|..+.. .... ...+..............|...+..++.. ..+.++|||++....+..+
T Consensus 353 l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l 432 (644)
T 1z3i_X 353 ITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLF 432 (644)
T ss_dssp HHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHH
Confidence 0000000000 0000 00000000000011122344445554443 3578999999999999999
Q ss_pred HHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCe---eEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhh
Q 013778 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380 (436)
Q Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR 380 (436)
...|...+ +.+..+||+++..+|.++++.|++|+. .+|++|.++++|+|++++++||+++++|++..+.|++||
T Consensus 433 ~~~l~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR 509 (644)
T 1z3i_X 433 EKLCRNRR---YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 509 (644)
T ss_dssp HHHHHHHT---CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTT
T ss_pred HHHHHHCC---CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHh
Confidence 99999877 889999999999999999999999865 489999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEE
Q 013778 381 TARAGQLGRCFTL 393 (436)
Q Consensus 381 ~~R~~~~g~~~~~ 393 (436)
++|.|+...|.++
T Consensus 510 ~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 510 VWRDGQKKTCYIY 522 (644)
T ss_dssp SSSTTCCSCEEEE
T ss_pred hhhcCCCCceEEE
Confidence 9999988766554
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=1.7e-30 Score=264.58 Aligned_cols=335 Identities=15% Similarity=0.147 Sum_probs=206.4
Q ss_pred cccchhHHHHHhhhCCCC----------CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHH
Q 013778 5 SLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 74 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~----------~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 74 (436)
.|||||.+|++.++..+. .+++++++++||||||+++ +++...+... ....++|||+|+++|+.|+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-DFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-TTCCEEEEEECGGGCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-CCCceEEEEeCcHHHHHHHHH
Confidence 599999999999876332 2368999999999999997 4455444322 133589999999999999999
Q ss_pred HHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEeCchhHHHHhhcCCCc-ccCC
Q 013778 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGF-TLEH 152 (436)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~l~~~~~~-~~~~ 152 (436)
.+..+... ...+..+.... ...+ ..+++|+|+||++|...+...... .++.
T Consensus 349 ~f~~f~~~------~v~~~~s~~~l---------------------~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~ 401 (1038)
T 2w00_A 349 EYQRFSPD------SVNGSENTAGL---------------------KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQ 401 (1038)
T ss_dssp HHHTTSTT------CSSSSCCCHHH---------------------HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGS
T ss_pred HHHHhccc------ccccccCHHHH---------------------HHHhcCCCCCEEEEEHHHHHHHHhcccchhcccc
Confidence 99887542 11222221111 1112 235699999999999887653222 3567
Q ss_pred ccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccc
Q 013778 153 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232 (436)
Q Consensus 153 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~ 232 (436)
+.++|+||||++....+ ...+...+ +..+.+++||||.
T Consensus 402 ~~lvIiDEAHrs~~~~~---~~~I~~~~---------------------------------------p~a~~lgfTATP~ 439 (1038)
T 2w00_A 402 QVVFIFDECHRSQFGEA---QKNLKKKF---------------------------------------KRYYQFGFTGTPI 439 (1038)
T ss_dssp CEEEEEESCCTTHHHHH---HHHHHHHC---------------------------------------SSEEEEEEESSCC
T ss_pred ccEEEEEccchhcchHH---HHHHHHhC---------------------------------------CcccEEEEeCCcc
Confidence 89999999999765433 23333333 2235788899887
Q ss_pred cCch-----hhhcc----------------ccCCceeeecCC-c-cc---cCCcc------ccceeeeccCcCcHHHHHH
Q 013778 233 QDPN-----KLAQL----------------DLHHPLFLTTGE-T-RY---KLPER------LESYKLICESKLKPLYLVA 280 (436)
Q Consensus 233 ~~~~-----~~~~~----------------~~~~~~~~~~~~-~-~~---~~~~~------~~~~~~~~~~~~~~~~l~~ 280 (436)
.... ..... +..-|..+.... . .. ..... ....... ....+...+..
T Consensus 440 ~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l-~~~~ri~~I~~ 518 (1038)
T 2w00_A 440 FPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAF-LHPMRIQEITQ 518 (1038)
T ss_dssp CSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTT-TCHHHHHHHHH
T ss_pred ccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 5432 00000 000111100000 0 00 00000 0000000 01111222222
Q ss_pred -HHH---hc--------CCCcEEEEcCCchhHHHHHHHHhhhcc---------cceeE-EEeccc----------c----
Q 013778 281 -LLQ---SL--------GEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKI-KEYSGL----------Q---- 324 (436)
Q Consensus 281 -~l~---~~--------~~~~~lvf~~~~~~~~~~~~~l~~~~~---------~~~~~-~~~~~~----------~---- 324 (436)
++. .. .+.+++|||+|+++|..+++.|++.+. ....+ .++|+. +
T Consensus 519 ~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~ 598 (1038)
T 2w00_A 519 YILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDET 598 (1038)
T ss_dssp HHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCC
T ss_pred HHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCcccccccccccccc
Confidence 222 11 245899999999999999999987641 12344 344432 1
Q ss_pred ------ch-----------------------------HHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC
Q 013778 325 ------RQ-----------------------------SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 369 (436)
Q Consensus 325 ------~~-----------------------------~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~ 369 (436)
+. .+|.+++++|++|+++|||+|+++.+|+|+|.+ .++.++.|.
T Consensus 599 ~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl 677 (1038)
T 2w00_A 599 FDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNL 677 (1038)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCC
T ss_pred ccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCC
Confidence 11 147888999999999999999999999999999 567788999
Q ss_pred ChhHHHHHhhhcccCCCC--ceEEEEecchhHHHHHHHHHHhcCC
Q 013778 370 YIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADND 412 (436)
Q Consensus 370 s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (436)
+...|+|++||++|.+.. ..++++........+...++.+.+.
T Consensus 678 ~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~~Al~~y~~~ 722 (1038)
T 2w00_A 678 RYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDK 722 (1038)
T ss_dssp CHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHHHHHHHTSCS
T ss_pred CccceeehhhccCcCCCCCCCcEEEEEccccHHHHHHHHHHHhCC
Confidence 999999999999997753 2233443334455555556655443
No 58
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=5.5e-28 Score=230.07 Aligned_cols=386 Identities=18% Similarity=0.171 Sum_probs=233.4
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.+++.|.-.--.+. +.-|..+.||+|||+++.+|++-... .+..+.+++|+..|+.|-++++..++...|
T Consensus 75 r~~dvQligg~~L~------~G~iaEM~TGEGKTLva~lp~~lnAL----~G~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 75 RPFDVQVMGGIALH------EGKVAEMKTGEGKTLAATMPIYLNAL----IGKGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp CCCHHHHHHHHHHH------TTCEEECCTTSCHHHHTHHHHHHHHT----TSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHh------CCChhhccCCCCccHHHHHHHHHHHh----cCCceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 46677765544332 33399999999999999998774332 344799999999999999999999999999
Q ss_pred ceEEEeccCcc------h-----hHHHHHhhc-cccccc-----------------cccCCchhHHHhhccCCcEEEeCc
Q 013778 85 LSVGLAVGQSS------I-----ADEISELIK-RPKLEA-----------------GICYDPEDVLQELQSAVDILVATP 135 (436)
Q Consensus 85 ~~v~~~~~~~~------~-----~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~~~~~~~Iii~T~ 135 (436)
+.++++....+ . .+...+-++ -|.... ....++.+ +.....++|.++|.
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DItYgTn 222 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDVTYGTN 222 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSEEEEEH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCCEEccC
Confidence 99998887310 0 000000000 000000 00011112 22233479999999
Q ss_pred hhH-HHHhhcCC-----CcccCCccEEEEehhhHHhhHh----------------HhhhHHHHHhhccccc---------
Q 013778 136 GRL-MDHINATR-----GFTLEHLCYLVVDETDRLLREA----------------YQAWLPTVLQLTRSDN--------- 184 (436)
Q Consensus 136 ~~l-~~~l~~~~-----~~~~~~~~~iIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~~--------- 184 (436)
.-+ ++.|..+. ......+.+.||||++.++-+. .+..+..+...+....
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 877 44554432 2235678999999999864432 1122222222221100
Q ss_pred ------------------ccccccccc------------------------------ccccccccccccccccc------
Q 013778 185 ------------------ENRFSDAST------------------------------FLPSAFGSLKTIRRCGV------ 210 (436)
Q Consensus 185 ------------------~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~------ 210 (436)
.+.+..... ...+..+....-++++.
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 000000000 00000000000000000
Q ss_pred --ccccCCC------------Ccc--ceeeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCc
Q 013778 211 --ERGFKDK------------PYP--RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 274 (436)
Q Consensus 211 --~~~~~~~------------~~~--~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (436)
.+++.-. .++ -.+...+|+|......++......+...++ ...+..... ....+......|
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IP--tnkp~~R~d-~~d~vy~t~~eK 459 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIP--THKPMIRKD-HDDLVFRTQKEK 459 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECC--CSSCCCCEE-CCCEEESSHHHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEEC--CCCCcceee-cCcEEEecHHHH
Confidence 0000000 000 012568899987655555444433322222 211111111 112233445567
Q ss_pred HHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCccc
Q 013778 275 PLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 352 (436)
Q Consensus 275 ~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~ 352 (436)
...+...+... .+.++||||+|++.++.+++.|++.+ +++..+|++....++..+..+++.| .|+|+|+++++
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G---i~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgR 534 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG---IPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGR 534 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT---CCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTT
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhC
Confidence 77777766543 46789999999999999999999877 8899999997776666666667666 69999999999
Q ss_pred ccCCC--------CCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhH-------HHHHHHHHHhc
Q 013778 353 GMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 410 (436)
Q Consensus 353 Gidi~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 410 (436)
|+|++ +..+||+++.|.|...|.|++||+||.|.+|.+++|++..|. +++.++++.+.
T Consensus 535 GtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 535 GTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp TCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred CcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 99998 667999999999999999999999999999999999987652 55667776664
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=1.1e-27 Score=208.72 Aligned_cols=189 Identities=30% Similarity=0.449 Sum_probs=157.8
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh----cCCccEEEEcCCHHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
+||..|+++|.+++..+.. ++++++.+|||+|||++++++++..+.... ..++++||++|+++|+.|+.+.+
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 122 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 122 (242)
T ss_dssp TTCCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHH
Confidence 5899999999999988774 789999999999999999999998876431 24668999999999999999999
Q ss_pred HHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEE
Q 013778 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 156 (436)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~i 156 (436)
..++...++.+..+.|+......... +..+++|+|+||+++.+++.... ..+++++++
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~l 180 (242)
T 3fe2_A 123 AEYCRACRLKSTCIYGGAPKGPQIRD---------------------LERGVEICIATPGRLIDFLECGK-TNLRRTTYL 180 (242)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHH---------------------HHHCCSEEEECHHHHHHHHHHTS-CCCTTCCEE
T ss_pred HHHHhhcCceEEEEECCCChHHHHHH---------------------hcCCCCEEEECHHHHHHHHHcCC-CCcccccEE
Confidence 99988889999999998876554332 23457999999999999987644 568899999
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013778 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+||||++.+.+|...+..+++.+.. ..+.+++|||+++...
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~--------------------------------------~~q~~~~SAT~~~~~~ 222 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRP--------------------------------------DRQTLMWSATWPKEVR 222 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCS--------------------------------------SCEEEEEESCCCHHHH
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCc--------------------------------------cceEEEEEeecCHHHH
Confidence 99999999988888888888766532 3478999999999888
Q ss_pred hhhccccCCceeeecCC
Q 013778 237 KLAQLDLHHPLFLTTGE 253 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~ 253 (436)
.+....+.+|..+..+.
T Consensus 223 ~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 223 QLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHCSSCEEEEECC
T ss_pred HHHHHHCCCCEEEEecC
Confidence 88888888888776543
No 60
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=206.25 Aligned_cols=186 Identities=33% Similarity=0.543 Sum_probs=155.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+++|.+++..+.. ++++++.+|||+|||++++++++..+.... .+.++||++|+++|+.|+++.+..++
T Consensus 61 ~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-~~~~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETP-QRLFALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSC-CSSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCC-CCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 6899999999999988775 789999999999999999999998876653 45689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...++.+..+.|+........ .+..+++|+|+||+++.+.+.....+.+++++++|+||
T Consensus 136 ~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 136 SSIGVQSAVIVGGIDSMSQSL---------------------ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp GGGTCCEEEECTTSCHHHHHH---------------------HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred ccCCeeEEEEECCCChHHHHH---------------------HhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 888889998888876544322 23356799999999999988875556788999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++.+.++...+..++..+.. ..+.+++|||++.....+..
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~--------------------------------------~~~~l~~SAT~~~~v~~~~~ 236 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPR--------------------------------------DRKTFLFSATMTKKVQKLQR 236 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCS--------------------------------------SSEEEEEESSCCHHHHHHHH
T ss_pred hhhhhccChHHHHHHHHHhCCC--------------------------------------CCeEEEEeccCCHHHHHHHH
Confidence 9999888888888877765422 23689999999988888888
Q ss_pred cccCCceeee
Q 013778 241 LDLHHPLFLT 250 (436)
Q Consensus 241 ~~~~~~~~~~ 250 (436)
..+.+|..+.
T Consensus 237 ~~l~~p~~i~ 246 (249)
T 3ber_A 237 AALKNPVKCA 246 (249)
T ss_dssp HHCSSCEEEE
T ss_pred HHCCCCEEEE
Confidence 8888887654
No 61
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=4.6e-27 Score=206.41 Aligned_cols=193 Identities=28% Similarity=0.446 Sum_probs=155.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh--------cCCccEEEEcCCHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--------VRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~l~~q~ 72 (436)
+||..|+++|.+++..+.. ++++++.+|||+|||++++++++..+.... ..++++||++|+++|+.|+
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 116 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQI 116 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHH
Confidence 5899999999999998775 789999999999999999999998876432 1346899999999999999
Q ss_pred HHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCC
Q 013778 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 152 (436)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~ 152 (436)
.+.+..++...++.+....|+........ .+..+++|+|+||++|.+.+.... ..+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~ 174 (253)
T 1wrb_A 117 LSESQKFSLNTPLRSCVVYGGADTHSQIR---------------------EVQMGCHLLVATPGRLVDFIEKNK-ISLEF 174 (253)
T ss_dssp HHHHHHHHTTSSCCEEEECSSSCSHHHHH---------------------HHSSCCSEEEECHHHHHHHHHTTS-BCCTT
T ss_pred HHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhCCCCCEEEECHHHHHHHHHcCC-CChhh
Confidence 99999998777888888888876544432 234567999999999999888744 56889
Q ss_pred ccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccc
Q 013778 153 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232 (436)
Q Consensus 153 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~ 232 (436)
++++|+||||++.+.++...+..++..+..+.. ...+.+++|||++
T Consensus 175 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~----------------------------------~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 175 CKYIVLDEADRMLDMGFEPQIRKIIEESNMPSG----------------------------------INRQTLMFSATFP 220 (253)
T ss_dssp CCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCG----------------------------------GGCEEEEEESSCC
T ss_pred CCEEEEeCHHHHHhCchHHHHHHHHhhccCCCC----------------------------------CCcEEEEEEEeCC
Confidence 999999999999988888888888875432110 1347899999999
Q ss_pred cCchhhhccccCCceeeecCC
Q 013778 233 QDPNKLAQLDLHHPLFLTTGE 253 (436)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (436)
+....+....+.+|..+....
T Consensus 221 ~~~~~~~~~~l~~~~~i~~~~ 241 (253)
T 1wrb_A 221 KEIQKLAADFLYNYIFMTVGR 241 (253)
T ss_dssp HHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHHHHHHcCCCEEEEECC
Confidence 888888888888887765443
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.5e-27 Score=207.59 Aligned_cols=184 Identities=33% Similarity=0.522 Sum_probs=153.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh---cCCccEEEEcCCHHHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
+||..|+++|.+++..+.. ++++++++|||+|||.+++++++..+.... ..+.+++|++|+++|+.|+++.++
T Consensus 72 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 147 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLK 147 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 5899999999999988875 689999999999999999999998876521 245689999999999999999999
Q ss_pred HhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013778 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
.++...+..+....|+........ .+..+++|+|+||+++...+.....+.+++++++|
T Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lV 206 (262)
T 3ly5_A 148 ELMTHHVHTYGLIMGGSNRSAEAQ---------------------KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLV 206 (262)
T ss_dssp HHTTTCCSCEEEECSSSCHHHHHH---------------------HHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEE
T ss_pred HHHhhcCceEEEEECCCCHHHHHH---------------------HhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEE
Confidence 998888888888888876554432 23345699999999999988876667788999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013778 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||||++.+.++...+..+...+.. ..+.+++|||+++....
T Consensus 207 iDEah~l~~~~~~~~l~~i~~~~~~--------------------------------------~~q~l~~SAT~~~~v~~ 248 (262)
T 3ly5_A 207 IDEADRILDVGFEEELKQIIKLLPT--------------------------------------RRQTMLFSATQTRKVED 248 (262)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHHSCS--------------------------------------SSEEEEECSSCCHHHHH
T ss_pred EcChHHHhhhhHHHHHHHHHHhCCC--------------------------------------CCeEEEEEecCCHHHHH
Confidence 9999999998888888888876532 23689999999988888
Q ss_pred hhccccCCce
Q 013778 238 LAQLDLHHPL 247 (436)
Q Consensus 238 ~~~~~~~~~~ 247 (436)
+....+.++.
T Consensus 249 ~~~~~l~~~~ 258 (262)
T 3ly5_A 249 LARISLKKEP 258 (262)
T ss_dssp HHHHHCSSCC
T ss_pred HHHHHcCCCC
Confidence 8877766543
No 63
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=208.21 Aligned_cols=192 Identities=29% Similarity=0.504 Sum_probs=151.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+++|.+++..+.. ++++++.+|||+|||++++++++..+......+.+++|++|+++|+.|+.+.+..++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS 122 (245)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 5899999999999988775 789999999999999999999998876544456689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC-CcccCCccEEEEe
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~-~~~~~~~~~iIiD 159 (436)
...+..+....|+........ .....+++|+|+||+++..++.... ...+++++++|+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 123 EGTGFRIHMIHKAAVAAKKFG--------------------PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp TTSCCCEECCCHHHHHHTTTS--------------------TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred cccCceEEEEecCccHHHHhh--------------------hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEe
Confidence 877887777766543222110 1123457999999999999987754 3568899999999
Q ss_pred hhhHHhhH---hHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013778 160 ETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 160 E~h~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|||++.++ ++...+..++..... +..+.+++|||++....
T Consensus 183 Eah~~~~~~~~~~~~~~~~i~~~~~~-------------------------------------~~~~~~~~SAT~~~~v~ 225 (245)
T 3dkp_A 183 ESDKLFEDGKTGFRDQLASIFLACTS-------------------------------------HKVRRAMFSATFAYDVE 225 (245)
T ss_dssp SHHHHHHHC--CHHHHHHHHHHHCCC-------------------------------------TTCEEEEEESSCCHHHH
T ss_pred ChHHhcccccccHHHHHHHHHHhcCC-------------------------------------CCcEEEEEeccCCHHHH
Confidence 99999885 455555555443322 23478999999999999
Q ss_pred hhhccccCCceeeecCC
Q 013778 237 KLAQLDLHHPLFLTTGE 253 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~ 253 (436)
.+....+.+|..+..+.
T Consensus 226 ~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 226 QWCKLNLDNVISVSIGA 242 (245)
T ss_dssp HHHHHHSSSCEEEEECC
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 99999999888776543
No 64
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=8.4e-27 Score=202.60 Aligned_cols=186 Identities=29% Similarity=0.469 Sum_probs=151.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh---cCCccEEEEcCCHHHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
+|+..|+++|.+++..+.. ++++++.+|||+|||++++++++..+.... ..+.+++|++|+++|+.|+.+.+.
T Consensus 43 ~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 118 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLR 118 (236)
T ss_dssp TTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 5899999999999988774 789999999999999999999988776521 246689999999999999999999
Q ss_pred HhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013778 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
.++...++.+..+.|+......... ..+++|+|+||+++.+.+.....+.+.+++++|
T Consensus 119 ~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 119 KVGKNHDFSAGLIIGGKDLKHEAER----------------------INNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp HHTTTSSCCEEEECCC--CHHHHHH----------------------HTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred HHhCCCCeeEEEEECCCCHHHHHHh----------------------CCCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 9987778888888888765444221 135699999999999988775556688999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013778 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||||++.+.++...+..+...+.. ..+.+++|||+++....
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~l~~SAT~~~~~~~ 218 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPK--------------------------------------KRQTLLFSATQTKSVKD 218 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCT--------------------------------------TSEEEEEESSCCHHHHH
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCC--------------------------------------CCeEEEEEeeCCHHHHH
Confidence 9999999888888777777765532 23689999999988888
Q ss_pred hhccccCCceeee
Q 013778 238 LAQLDLHHPLFLT 250 (436)
Q Consensus 238 ~~~~~~~~~~~~~ 250 (436)
+....+.+|..+.
T Consensus 219 ~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 219 LARLSLKNPEYVW 231 (236)
T ss_dssp HHHHSCSSCEEEE
T ss_pred HHHHhCCCCEEEE
Confidence 8888888887664
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=7.1e-27 Score=198.77 Aligned_cols=184 Identities=27% Similarity=0.485 Sum_probs=150.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+++|.++++.+.. ++++++.+|||+|||++++++++..+.... .+.+++|++|+++|+.|+.+.+..++
T Consensus 21 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKK-DNIQAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTS-CSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccC-CCeeEEEEeCcHHHHHHHHHHHHHHH
Confidence 6899999999999998775 789999999999999999999888765432 45689999999999999999999998
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
... +..+....|+........ ....+++|+|+||+++.+.+.... ..+++++++|+|
T Consensus 96 ~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViD 153 (206)
T 1vec_A 96 KHMGGAKVMATTGGTNLRDDIM---------------------RLDDTVHVVIATPGRILDLIKKGV-AKVDHVQMIVLD 153 (206)
T ss_dssp TTSSSCCEEEECSSSCHHHHHH---------------------HTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEE
T ss_pred hhcCCceEEEEeCCccHHHHHH---------------------hcCCCCCEEEeCHHHHHHHHHcCC-cCcccCCEEEEE
Confidence 766 678888888876554432 233457999999999999887643 568899999999
Q ss_pred hhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013778 160 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 160 E~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
|||++.+.++...+..+...+.. ..+.+++|||++.......
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~~--------------------------------------~~~~l~~SAT~~~~~~~~~ 195 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLPK--------------------------------------NRQILLYSATFPLSVQKFM 195 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCT--------------------------------------TCEEEEEESCCCHHHHHHH
T ss_pred ChHHhHhhCcHHHHHHHHHhCCc--------------------------------------cceEEEEEeeCCHHHHHHH
Confidence 99999888888777777765531 2368999999998888888
Q ss_pred ccccCCceee
Q 013778 240 QLDLHHPLFL 249 (436)
Q Consensus 240 ~~~~~~~~~~ 249 (436)
...+.+|..+
T Consensus 196 ~~~l~~p~~i 205 (206)
T 1vec_A 196 NSHLEKPYEI 205 (206)
T ss_dssp HHHCSSCEEE
T ss_pred HHHcCCCeEe
Confidence 8887777653
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.95 E-value=4.6e-27 Score=201.71 Aligned_cols=188 Identities=23% Similarity=0.343 Sum_probs=151.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+..|+++|.++++.+.. ++++++.+|||+|||.+++++++..+.... .+.+++|++|+++|+.|+.+.+..++
T Consensus 22 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPER-AEVQAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCc-CCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 5899999999999988775 789999999999999999999988776532 45689999999999999999999987
Q ss_pred hhh----CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEE
Q 013778 81 PAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 156 (436)
Q Consensus 81 ~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~i 156 (436)
... ++.+....|+....... .....+++|+|+||+++.+.+.... ..+++++++
T Consensus 97 ~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~l 154 (219)
T 1q0u_A 97 KFCPKDRMIVARCLIGGTDKQKAL---------------------EKLNVQPHIVIGTPGRINDFIREQA-LDVHTAHIL 154 (219)
T ss_dssp TTSCGGGCCCEEEECCCSHHHHTT---------------------CCCSSCCSEEEECHHHHHHHHHTTC-CCGGGCCEE
T ss_pred hhcccccceEEEEEeCCCCHHHHH---------------------HHcCCCCCEEEeCHHHHHHHHHcCC-CCcCcceEE
Confidence 665 57777777776543321 1123457999999999999887643 567889999
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013778 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+||||++.+.++...+..++..+.. ..+.+++|||++....
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~--------------------------------------~~~~l~~SAT~~~~~~ 196 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPK--------------------------------------DLQMLVFSATIPEKLK 196 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCT--------------------------------------TCEEEEEESCCCGGGH
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCc--------------------------------------ccEEEEEecCCCHHHH
Confidence 99999999888887777777765421 2478999999999888
Q ss_pred hhhccccCCceeeecCC
Q 013778 237 KLAQLDLHHPLFLTTGE 253 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~ 253 (436)
.+....+.+|..+....
T Consensus 197 ~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 197 PFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHHHCSSCEEEECC-
T ss_pred HHHHHHcCCCeEEEeec
Confidence 88988889887765443
No 67
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=9.4e-27 Score=201.21 Aligned_cols=184 Identities=22% Similarity=0.350 Sum_probs=148.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+++|.+++..+.. ++++++.+|||+|||++++++++..+.... .+.++||++|+++|+.|+.+.+..++
T Consensus 42 ~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLEN-LSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcC-CCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 5899999999999988765 789999999999999999999888775432 45689999999999999999999987
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
... ++.+..+.|+........ ...+++|+|+||+++.+++.... +.+++++++|+|
T Consensus 117 ~~~~~~~~~~~~g~~~~~~~~~----------------------~~~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~~~lViD 173 (230)
T 2oxc_A 117 IKMEGLECHVFIGGTPLSQDKT----------------------RLKKCHIAVGSPGRIKQLIELDY-LNPGSIRLFILD 173 (230)
T ss_dssp TTSTTCCEEEECTTSCHHHHHH----------------------HTTSCSEEEECHHHHHHHHHTTS-SCGGGCCEEEES
T ss_pred cccCCceEEEEeCCCCHHHHHH----------------------hccCCCEEEECHHHHHHHHhcCC-cccccCCEEEeC
Confidence 654 788888888876544422 12356999999999999887643 567889999999
Q ss_pred hhhHHhhHh-HhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013778 160 ETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 160 E~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
|||++.+.+ +...+..+++.+.. ..+.+++|||+++....+
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~l~lSAT~~~~~~~~ 215 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPA--------------------------------------SKQMLAVSATYPEFLANA 215 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCS--------------------------------------SCEEEEEESCCCHHHHHH
T ss_pred CchHhhcCcchHHHHHHHHHhCCC--------------------------------------CCeEEEEEeccCHHHHHH
Confidence 999998876 77777777765531 236899999998887777
Q ss_pred hccccCCceeee
Q 013778 239 AQLDLHHPLFLT 250 (436)
Q Consensus 239 ~~~~~~~~~~~~ 250 (436)
....+.+|..+.
T Consensus 216 ~~~~~~~p~~i~ 227 (230)
T 2oxc_A 216 LTKYMRDPTFVR 227 (230)
T ss_dssp HTTTCSSCEEEC
T ss_pred HHHHcCCCeEEE
Confidence 877777776653
No 68
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=9.4e-27 Score=201.16 Aligned_cols=184 Identities=31% Similarity=0.463 Sum_probs=144.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh-----hcCCccEEEEcCCHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVKDV 75 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~l~~q~~~~ 75 (436)
+||..|+++|.+++..+.. ++++++.+|||+|||++++++++..+... ...+.++||++|+++|+.|+.+.
T Consensus 38 ~g~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 113 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAE 113 (228)
T ss_dssp HTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHH
Confidence 4889999999999988774 78999999999999999999988776532 12566899999999999999999
Q ss_pred HHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccE
Q 013778 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 155 (436)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~ 155 (436)
+..+. ..++.+....|+....... .....+++|+|+||+++.+++.... ..++++++
T Consensus 114 ~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~iiv~Tp~~l~~~~~~~~-~~~~~~~~ 170 (228)
T 3iuy_A 114 CSKYS-YKGLKSICIYGGRNRNGQI---------------------EDISKGVDIIIATPGRLNDLQMNNS-VNLRSITY 170 (228)
T ss_dssp HHHHC-CTTCCEEEECC------CH---------------------HHHHSCCSEEEECHHHHHHHHHTTC-CCCTTCCE
T ss_pred HHHhc-ccCceEEEEECCCChHHHH---------------------HHhcCCCCEEEECHHHHHHHHHcCC-cCcccceE
Confidence 99986 3367788888776544332 2234567999999999999887644 66889999
Q ss_pred EEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCc
Q 013778 156 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235 (436)
Q Consensus 156 iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 235 (436)
+|+||||++.+.++...+..++..... ..+.+++|||+++..
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~l~~SAT~~~~~ 212 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRP--------------------------------------DRQTVMTSATWPDTV 212 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCS--------------------------------------SCEEEEEESCCCHHH
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCc--------------------------------------CCeEEEEEeeCCHHH
Confidence 999999999988888888888766532 347899999999888
Q ss_pred hhhhccccCCceee
Q 013778 236 NKLAQLDLHHPLFL 249 (436)
Q Consensus 236 ~~~~~~~~~~~~~~ 249 (436)
.......+.+|..+
T Consensus 213 ~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 213 RQLALSYLKDPMIV 226 (228)
T ss_dssp HHHHHTTCSSCEEE
T ss_pred HHHHHHHCCCCEEE
Confidence 88888888887654
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.2e-26 Score=196.76 Aligned_cols=185 Identities=23% Similarity=0.354 Sum_probs=148.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+++|.++++.+.. ++++++.+|||+|||.+++++++..+.... .+.+++|++|+++|+.|+.+.++.+.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp TTCCCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCT-TCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccC-CCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 5899999999999998875 688999999999999999999988765432 34589999999999999999999987
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
... ++.+..+.|+.........+. ...++|+|+||+.+.+.+.... ..+++++++|+|
T Consensus 107 ~~~~~~~v~~~~g~~~~~~~~~~~~--------------------~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViD 165 (220)
T 1t6n_A 107 KYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTPGRILALARNKS-LNLKHIKHFILD 165 (220)
T ss_dssp TTSTTCCEEEESCCSCHHHHHHHHH--------------------HSCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEE
T ss_pred hhCCCceEEEEeCCCChHHHHHHHh--------------------cCCCCEEEeCHHHHHHHHHhCC-CCcccCCEEEEc
Confidence 665 688888888876554432221 2345999999999999887643 568899999999
Q ss_pred hhhHHhh-HhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013778 160 ETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 160 E~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
|||++.+ .++...+..+++... ...+.+++|||++......
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~ 207 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTP--------------------------------------HEKQVMMFSATLSKEIRPV 207 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSC--------------------------------------SSSEEEEEESCCCTTTHHH
T ss_pred CHHHHhcccCcHHHHHHHHHhCC--------------------------------------CcCeEEEEEeecCHHHHHH
Confidence 9999976 466666666665432 1247899999999988888
Q ss_pred hccccCCceee
Q 013778 239 AQLDLHHPLFL 249 (436)
Q Consensus 239 ~~~~~~~~~~~ 249 (436)
....+.+|..+
T Consensus 208 ~~~~~~~p~~i 218 (220)
T 1t6n_A 208 CRKFMQDPMEI 218 (220)
T ss_dssp HHTTCSSCEEE
T ss_pred HHHHcCCCeEE
Confidence 88888888654
No 70
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=6.6e-27 Score=203.04 Aligned_cols=186 Identities=26% Similarity=0.425 Sum_probs=145.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+++|.+++..+.. ++++++.+|||+|||++++++++..+.... .+.++||++|+++|+.|+.+.++.++
T Consensus 48 ~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEF-KETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp HTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcC-CCceEEEEECcHHHHHHHHHHHHHHh
Confidence 4889999999999988775 789999999999999999999988775432 45689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...+..+....|+.......... ....++|+|+||+++.+.+.... ..+++++++|+||
T Consensus 123 ~~~~~~~~~~~g~~~~~~~~~~l--------------------~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~~lViDE 181 (237)
T 3bor_A 123 DYMGATCHACIGGTNVRNEMQKL--------------------QAEAPHIVVGTPGRVFDMLNRRY-LSPKWIKMFVLDE 181 (237)
T ss_dssp TTTTCCEEEECC---------------------------------CCCSEEEECHHHHHHHHHTTS-SCSTTCCEEEEES
T ss_pred hhcCceEEEEECCCchHHHHHHH--------------------hcCCCCEEEECHHHHHHHHHhCC-cCcccCcEEEECC
Confidence 77778888888776543332111 11236999999999999887643 5678899999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++.+.++...+..+++.+. ...+.+++|||+++.......
T Consensus 182 ah~~~~~~~~~~l~~i~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 182 ADEMLSRGFKDQIYEIFQKLN--------------------------------------TSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC--------------------------------------TTCEEEEECSSCCHHHHHHHH
T ss_pred chHhhccCcHHHHHHHHHhCC--------------------------------------CCCeEEEEEEecCHHHHHHHH
Confidence 999988888777777776542 134789999999988888888
Q ss_pred cccCCceeee
Q 013778 241 LDLHHPLFLT 250 (436)
Q Consensus 241 ~~~~~~~~~~ 250 (436)
..+.+|..+.
T Consensus 224 ~~l~~p~~i~ 233 (237)
T 3bor_A 224 KFMRDPIRIL 233 (237)
T ss_dssp HHCSSCEEEC
T ss_pred HHCCCCEEEE
Confidence 8888887654
No 71
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.94 E-value=1e-26 Score=200.51 Aligned_cols=185 Identities=24% Similarity=0.436 Sum_probs=146.4
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+++|.+++..+.. ++++++.+|||+|||.+++++++..+.... .+.+++|++|+++|+.|+.+.+..++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSV-KAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp HTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTC-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccC-CCceEEEEECCHHHHHHHHHHHHHHh
Confidence 4889999999999998775 789999999999999999999888775542 55689999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...++.+....|+......... ..+++|+|+||+++.+.+.... ..+++++++|+||
T Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~iiv~Tp~~l~~~~~~~~-~~~~~~~~iViDE 163 (224)
T 1qde_A 107 FHMDIKVHACIGGTSFVEDAEG----------------------LRDAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDE 163 (224)
T ss_dssp TTSCCCEEEECC--------------------------------CTTCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEET
T ss_pred cccCceEEEEeCCcchHHHHhc----------------------CCCCCEEEECHHHHHHHHHhCC-cchhhCcEEEEcC
Confidence 8778888888888764443211 1236999999999999887643 6688999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013778 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
||++.+.++...+..+...+.. ..+.+++|||+++.......
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~--------------------------------------~~~~i~lSAT~~~~~~~~~~ 205 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPP--------------------------------------TTQVVLLSATMPNDVLEVTT 205 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCT--------------------------------------TCEEEEEESSCCHHHHHHHH
T ss_pred hhHHhhhhhHHHHHHHHHhCCc--------------------------------------cCeEEEEEeecCHHHHHHHH
Confidence 9999888887777777765422 23689999999988888888
Q ss_pred cccCCceeeec
Q 013778 241 LDLHHPLFLTT 251 (436)
Q Consensus 241 ~~~~~~~~~~~ 251 (436)
..+.+|..+..
T Consensus 206 ~~~~~p~~i~~ 216 (224)
T 1qde_A 206 KFMRNPVRILV 216 (224)
T ss_dssp HHCSSCEEEC-
T ss_pred HHCCCCEEEEe
Confidence 88888876643
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=208.01 Aligned_cols=186 Identities=20% Similarity=0.293 Sum_probs=151.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+++|.+++..++.. .++++++++|||||||++++++++..+.... .++++||++||++|+.|+.+.+..++
T Consensus 110 ~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~-~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhccC-CCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 68999999999999887752 2389999999999999999999998876543 55689999999999999999999987
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
... ++.+....|+...... ...+++|+|+||++|.+++.+...+.+++++++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 187 KFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp TTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred hhCCCcEEEEEeCCccHhhh------------------------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 654 5777777776543221 123568999999999999977565778999999999
Q ss_pred hhhHHhh-HhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013778 160 ETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 160 E~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
|||++.+ .++...+..+...+. +..|.+++|||++.....+
T Consensus 243 Ead~l~~~~~~~~~~~~i~~~~~--------------------------------------~~~q~i~~SAT~~~~v~~~ 284 (300)
T 3fmo_B 243 EADVMIATQGHQDQSIRIQRMLP--------------------------------------RNCQMLLFSATFEDSVWKF 284 (300)
T ss_dssp THHHHHHSTTHHHHHHHHHTTSC--------------------------------------TTCEEEEEESCCCHHHHHH
T ss_pred CHHHHhhccCcHHHHHHHHHhCC--------------------------------------CCCEEEEEeccCCHHHHHH
Confidence 9999987 577777777766542 2347899999999999999
Q ss_pred hccccCCceeeec
Q 013778 239 AQLDLHHPLFLTT 251 (436)
Q Consensus 239 ~~~~~~~~~~~~~ 251 (436)
....+.+|..+..
T Consensus 285 a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 285 AQKVVPDPNVIKL 297 (300)
T ss_dssp HHHHSSSCEEEEE
T ss_pred HHHHCCCCeEEEe
Confidence 9999999887653
No 73
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=3.2e-25 Score=218.72 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=103.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEe
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~ 365 (436)
.+.++||||+++..++.+++.|.+.+ +.+..+|++++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~ 514 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG---IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAIL 514 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEET
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEe
Confidence 57799999999999999999999887 788999999999999999999999999999999999999999999999999
Q ss_pred cC-----CCChhHHHHHhhhcccCCCCceEEEEecchhH
Q 013778 366 DK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 366 ~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
+. |.|..+|+|++||+||.+ +|.++++++..+.
T Consensus 515 d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 515 DADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp TTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 97 889999999999999985 8999999987544
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.94 E-value=7.6e-26 Score=192.60 Aligned_cols=184 Identities=33% Similarity=0.486 Sum_probs=147.4
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh--cCCccEEEEcCCHHHHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+|+..|+++|.++++.+.. ++++++.+|||+|||.+++++++..+.... ..+++++|++|+++|+.|+.+.+..
T Consensus 19 ~~~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 94 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTA 94 (207)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHH
Confidence 5889999999999998775 789999999999999999999888775321 2456899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013778 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
++.. ..+....|+........ ....+++|+|+||+.+.+.+.... ..+++++++|+
T Consensus 95 ~~~~--~~~~~~~~~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iVi 150 (207)
T 2gxq_A 95 VAPH--LKVVAVYGGTGYGKQKE---------------------ALLRGADAVVATPGRALDYLRQGV-LDLSRVEVAVL 150 (207)
T ss_dssp HCTT--SCEEEECSSSCSHHHHH---------------------HHHHCCSEEEECHHHHHHHHHHTS-SCCTTCSEEEE
T ss_pred Hhhc--ceEEEEECCCChHHHHH---------------------HhhCCCCEEEECHHHHHHHHHcCC-cchhhceEEEE
Confidence 8764 56777777765443322 223456999999999999887643 66889999999
Q ss_pred ehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013778 159 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 159 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
||||++.+.++...+..++..... ..+.+++|||+++.....
T Consensus 151 DEah~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~ 192 (207)
T 2gxq_A 151 DEADEMLSMGFEEEVEALLSATPP--------------------------------------SRQTLLFSATLPSWAKRL 192 (207)
T ss_dssp ESHHHHHHTTCHHHHHHHHHTSCT--------------------------------------TSEEEEECSSCCHHHHHH
T ss_pred EChhHhhccchHHHHHHHHHhCCc--------------------------------------cCeEEEEEEecCHHHHHH
Confidence 999999888888777777665421 236899999998888888
Q ss_pred hccccCCceeee
Q 013778 239 AQLDLHHPLFLT 250 (436)
Q Consensus 239 ~~~~~~~~~~~~ 250 (436)
....+.+|..+.
T Consensus 193 ~~~~~~~p~~i~ 204 (207)
T 2gxq_A 193 AERYMKNPVLIN 204 (207)
T ss_dssp HHHHCSSCEEEE
T ss_pred HHHHcCCCeEEE
Confidence 888888887653
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=3.1e-24 Score=211.61 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=103.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEe
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~ 365 (436)
.+.++||||+++..++.+++.|++.+ +.+..+|++++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~ 520 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG---IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAIL 520 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEET
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC---CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEe
Confidence 46799999999999999999999886 788999999999999999999999999999999999999999999999999
Q ss_pred cC-----CCChhHHHHHhhhcccCCCCceEEEEecchhH
Q 013778 366 DK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 366 ~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
+. |.+...|+||+||+||. ..|.+++++++.+.
T Consensus 521 d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 521 DADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp TTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCH
T ss_pred CcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCH
Confidence 97 88999999999999998 68999999987544
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=3.1e-25 Score=180.45 Aligned_cols=148 Identities=26% Similarity=0.453 Sum_probs=136.7
Q ss_pred cccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCC
Q 013778 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340 (436)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 340 (436)
.+..+........|...+..++.....+++||||++++.++.+++.|.+.+ ..+..+||+|+..+|..+++.|++|+
T Consensus 9 ~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 9 NIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 345556666677899999999988888899999999999999999999876 88999999999999999999999999
Q ss_pred eeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcC
Q 013778 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411 (436)
Q Consensus 341 ~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (436)
.+|||+|+++++|+|+|++++||+++.|+++..|.|++||+||.|++|.+++++...+...++.+.+.+..
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887743
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=3.7e-24 Score=207.76 Aligned_cols=132 Identities=25% Similarity=0.279 Sum_probs=107.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+ .|++.|..++..++. |+ +..+.||+|||+++.++++-... .+..++|++||+.|+.|.++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL----~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNAL----TGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHT----TCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHH----hCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 578 899999999887664 55 99999999999999999864333 23479999999999999999999999
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCC-----CcccC---
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLE--- 151 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~-----~~~~~--- 151 (436)
..+|+.+.++.|+.+..... ...+++|+|+||+.| ++++..+. .+.++
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~-----------------------~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~ 201 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERR-----------------------KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDH 201 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHH-----------------------HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSS
T ss_pred HhcCCeEEEEeCCCCHHHHH-----------------------HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCC
Confidence 99999999999987643321 223479999999999 78777653 24577
Q ss_pred CccEEEEehhhHHhh
Q 013778 152 HLCYLVVDETDRLLR 166 (436)
Q Consensus 152 ~~~~iIiDE~h~~~~ 166 (436)
++.++|+||+|.++.
T Consensus 202 ~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 202 PLHYAIIDEVDSILI 216 (997)
T ss_dssp SSCEEEETTHHHHTT
T ss_pred CcceEEEechHHHHH
Confidence 899999999999863
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=3.2e-25 Score=180.83 Aligned_cols=145 Identities=28% Similarity=0.451 Sum_probs=127.6
Q ss_pred eeeeccCcC-cHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeE
Q 013778 265 YKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343 (436)
Q Consensus 265 ~~~~~~~~~-~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 343 (436)
+........ |...+.++++....+++||||++++.++.++..|++.+ ..+..+||+++..+|..+++.|++|+.+|
T Consensus 7 ~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 83 (165)
T 1fuk_A 7 FYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGSSRI 83 (165)
T ss_dssp EEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred EEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHcCCCEE
Confidence 333344444 88899999988888999999999999999999999876 88999999999999999999999999999
Q ss_pred EEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcCC
Q 013778 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412 (436)
Q Consensus 344 lv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (436)
||+|+++++|+|+|++++||+++.|+++..|.|++||+||.|+.|.+++++.+.+...+..+.+.+...
T Consensus 84 lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (165)
T 1fuk_A 84 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 152 (165)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999888777543
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=1.5e-24 Score=177.71 Aligned_cols=147 Identities=27% Similarity=0.397 Sum_probs=133.0
Q ss_pred cccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCC
Q 013778 261 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340 (436)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 340 (436)
.+..+........|...+.++++....+++||||++++.++.+++.|.+.+ ..+..+||+|+..+|..+++.|++|+
T Consensus 5 ~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 344556666677899999999998888899999999999999999999876 88999999999999999999999999
Q ss_pred eeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecch-hHHHHHHHHHHhc
Q 013778 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKAD 410 (436)
Q Consensus 341 ~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~ 410 (436)
.+|||+|+++++|+|+|++++||+++.|+++..|+|++||+||.|+.|.+++++.+. +...++.+.+.+.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999876 4566777776664
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=6.7e-25 Score=181.81 Aligned_cols=159 Identities=30% Similarity=0.491 Sum_probs=126.6
Q ss_pred ccccceeeeccCcCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhc
Q 013778 260 ERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338 (436)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 338 (436)
..+...........|...+.+++... .++++||||+++..++.+++.|+..+ +.+..+||+++..+|..+++.|++
T Consensus 18 ~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 18 ENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp TTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------CHHHHHHHH
T ss_pred CCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHHHc
Confidence 34555566666778888999988876 57899999999999999999999876 889999999999999999999999
Q ss_pred CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcCCCCCCCC
Q 013778 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418 (436)
Q Consensus 339 g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (436)
|+.+|||+|+++++|+|+|++++||+++.|+++..|+|++||++|.|+.|.+++++.+.+...++.+.+.+.... ++
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~---~~ 171 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK---QE 171 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT---CC
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc---CC
Confidence 999999999999999999999999999999999999999999999999999999999999888888888776544 44
Q ss_pred CChhhh
Q 013778 419 IPSSLI 424 (436)
Q Consensus 419 ~~~~~~ 424 (436)
+++.+.
T Consensus 172 ~~~~l~ 177 (185)
T 2jgn_A 172 VPSWLE 177 (185)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 555443
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=9.6e-25 Score=179.85 Aligned_cols=149 Identities=29% Similarity=0.505 Sum_probs=130.5
Q ss_pred cccceeeeccCc-CcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcC
Q 013778 261 RLESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339 (436)
Q Consensus 261 ~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 339 (436)
.+..+....... .|...+..+++....+++||||++++.++.++..|.+.+ ..+..+||+++..+|..+++.|++|
T Consensus 7 ~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 7 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 344445544443 488899999988888899999999999999999999876 8899999999999999999999999
Q ss_pred CeeEEEecCCcccccCCCCCCeEEEecCC------CChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcCC
Q 013778 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412 (436)
Q Consensus 340 ~~~vlv~t~~~~~Gidi~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (436)
+.+|||+|+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++++...+...+..+.+.+...
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999 89999999999999999999999999999999999998887543
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=4.3e-24 Score=181.20 Aligned_cols=147 Identities=30% Similarity=0.444 Sum_probs=134.0
Q ss_pred cceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCee
Q 013778 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342 (436)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 342 (436)
...........|...+..++....++++||||++++.++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+.+
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 3445556678899999999998889999999999999999999999876 8899999999999999999999999999
Q ss_pred EEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcCC
Q 013778 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412 (436)
Q Consensus 343 vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (436)
|||+|+++++|+|+|++++||+++.|+++..|+||+||+||.|+.|.|+++++..+...+..+.+.+...
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999998888888777543
No 83
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=179.01 Aligned_cols=150 Identities=27% Similarity=0.428 Sum_probs=128.0
Q ss_pred ccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcC
Q 013778 260 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339 (436)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 339 (436)
..+...........|...+.+++... ++++||||++++.++.+++.|+..+ +.+..+||+++..+|..+++.|++|
T Consensus 28 ~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~~g 103 (191)
T 2p6n_A 28 LDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---VEAVAIHGGKDQEERTKAIEAFREG 103 (191)
T ss_dssp CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---CCEEEECTTSCHHHHHHHHHHHHHT
T ss_pred cCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcC
Confidence 34455555566678888888888764 4689999999999999999999876 8899999999999999999999999
Q ss_pred CeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecch-hHHHHHHHHHHhcCCC
Q 013778 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADNDS 413 (436)
Q Consensus 340 ~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 413 (436)
+.+|||+|+++++|+|+|++++||+++.|+++..|+||+||+||.|++|.+++++... +...+..+.+.+...+
T Consensus 104 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~ 178 (191)
T 2p6n_A 104 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAK 178 (191)
T ss_dssp SCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999876 5666666666554443
No 84
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=1.7e-24 Score=209.45 Aligned_cols=152 Identities=19% Similarity=0.138 Sum_probs=91.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|| .+||+|.+++..+...+..++++++.+|||+|||++++++++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc-
Confidence 467 79999999988887777778999999999999999998887642 348999999999999999887764
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccc--------c-------------------ccccCCchhHHHhhccCCcEEEe
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKL--------E-------------------AGICYDPEDVLQELQSAVDILVA 133 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~-------------------~~~~~~~~~~~~~~~~~~~Iii~ 133 (436)
++.+..+.|................. . ....| +....+......+|+|+
T Consensus 75 ---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~C-py~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYC-PYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ---TCCEEEC----------------------------------------------------------CTTGGGCSEEEE
T ss_pred ---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCC-hHHHHHHHhhcCCEEEE
Confidence 55555555543210000000000000 0 00000 11111233455799999
Q ss_pred CchhHHHHhhcCC-C-----cccCCccEEEEehhhHHh
Q 013778 134 TPGRLMDHINATR-G-----FTLEHLCYLVVDETDRLL 165 (436)
Q Consensus 134 T~~~l~~~l~~~~-~-----~~~~~~~~iIiDE~h~~~ 165 (436)
||+.|++...+.. . -.+.+.+++||||||++.
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999987543311 0 024567899999999983
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=4.8e-23 Score=182.69 Aligned_cols=147 Identities=29% Similarity=0.444 Sum_probs=131.2
Q ss_pred cceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCee
Q 013778 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342 (436)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 342 (436)
.++........|...+..+++....+++||||++++.++.+++.|.+.+ +.+..+||+++..+|..+++.|++|+.+
T Consensus 4 ~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 4 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred EEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 4455666778899999999988889999999999999999999998876 8899999999999999999999999999
Q ss_pred EEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcCC
Q 013778 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412 (436)
Q Consensus 343 vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (436)
|||+|+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.|+++++..+...+..+.+.....
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999999999988888888777543
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.82 E-value=7e-25 Score=179.64 Aligned_cols=136 Identities=34% Similarity=0.519 Sum_probs=125.5
Q ss_pred cCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcc
Q 013778 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351 (436)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~ 351 (436)
..|...+.++++...++++||||++++.++.+++.|++.+ ..+..+||+++..+|..+++.|++|+.+|||+|++++
T Consensus 15 ~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 5677778888877777899999999999999999998776 8899999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhc
Q 013778 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 410 (436)
Q Consensus 352 ~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (436)
+|+|+|++++||+++.|+++..|+|++||+||.|+.|.+++++...+...+..+.+.+.
T Consensus 92 ~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 99999999999999999999999999999999999999999999988888877776553
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=1.2e-21 Score=190.46 Aligned_cols=156 Identities=18% Similarity=0.054 Sum_probs=108.2
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013778 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
|| ++||+|.++++.+...+..++++++.+|||+|||++++++++. .+.+++|++||++|+.|+.+++..+..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 45 6999999999988877778899999999999999999999886 234899999999999999999988766
Q ss_pred hhCceEEEeccCcchhHHH-H-------Hhhcccccc-----------------------ccccCCchhHHHhhccCCcE
Q 013778 82 AVGLSVGLAVGQSSIADEI-S-------ELIKRPKLE-----------------------AGICYDPEDVLQELQSAVDI 130 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~-~-------~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~I 130 (436)
..++.+..+.|........ . .....+... ....| +....+.....++|
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~C-py~~ar~~~~~adI 151 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFC-PYYSLLNSLYKADV 151 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCC-HHHHHHHHGGGCSE
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcC-ccHHHHhhhhcCCE
Confidence 5577777776643221000 0 000000000 00000 12222344467899
Q ss_pred EEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhh
Q 013778 131 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 166 (436)
Q Consensus 131 ii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~ 166 (436)
+|+||..|++...+..........++||||||++.+
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 999999998875543311224678999999999877
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.87 E-value=5.4e-21 Score=186.97 Aligned_cols=88 Identities=22% Similarity=0.170 Sum_probs=73.7
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
+|||+|.+++..+...+..++++++.||||+|||++++++++..+... +.+++|++||++++.|+.+++..+....+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 589999999998888777899999999999999999999999887653 35899999999999999999998876556
Q ss_pred ceEEEeccCcc
Q 013778 85 LSVGLAVGQSS 95 (436)
Q Consensus 85 ~~v~~~~~~~~ 95 (436)
+.+..+.|...
T Consensus 80 ~~~~~l~gr~~ 90 (620)
T 4a15_A 80 IRAIPMQGRVN 90 (620)
T ss_dssp CCEEECCCHHH
T ss_pred eEEEEEECCCc
Confidence 77766666544
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=165.32 Aligned_cols=142 Identities=21% Similarity=0.248 Sum_probs=101.6
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh--cCCccEEEEcCCHHHHHH-HHHHHHHhh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VKDVFAAIA 80 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~~lil~P~~~l~~q-~~~~~~~~~ 80 (436)
..|+++|.++++.++. ++++++.+|||+|||++++.++...+.... ..+.+++|++|+++|+.| +.+.+..+.
T Consensus 32 ~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4799999999998875 689999999999999999998887766542 235689999999999999 778888876
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC-----cccCCccE
Q 013778 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-----FTLEHLCY 155 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~-----~~~~~~~~ 155 (436)
.. ++.+..+.|+........ ....+++|+|+||+.+.+.+..... ..+.++++
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFP---------------------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSL 165 (216)
T ss_dssp TT-TSCEEECCC---CCCCHH---------------------HHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSE
T ss_pred cc-CceEEEEeCCcccchhHH---------------------hhccCCCEEEECHHHHHHHHhccCcccccccchhcccE
Confidence 54 677888877765332211 1122459999999999998876432 45778999
Q ss_pred EEEehhhHHhhHhHhh
Q 013778 156 LVVDETDRLLREAYQA 171 (436)
Q Consensus 156 iIiDE~h~~~~~~~~~ 171 (436)
+|+||||++.+.++..
T Consensus 166 iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 166 IIIDECHHTNKEAVYN 181 (216)
T ss_dssp EEETTC-------CHH
T ss_pred EEEECchhhccCCcHH
Confidence 9999999997664443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.81 E-value=3.8e-20 Score=164.79 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=97.1
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|+++|.+++..++. +.+.++++|||+|||.+++.++...+.. ...++||++|+++|+.||.+.+..++...+
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH---CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 689999999998775 4778999999999999987777765543 234799999999999999999999865445
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013778 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
..+..+.++..... ......+|+|+||+.+.+. ....+.+++++|+||||++
T Consensus 186 ~~~~~~~~~~~~~~------------------------~~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------------KYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLA 237 (282)
T ss_dssp GGEEECSTTCSSTT------------------------CCCTTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGC
T ss_pred ceEEEEeCCCcchh------------------------hhccCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccC
Confidence 56666666543211 1123459999999887443 2234678999999999998
Q ss_pred hhH
Q 013778 165 LRE 167 (436)
Q Consensus 165 ~~~ 167 (436)
.+.
T Consensus 238 ~~~ 240 (282)
T 1rif_A 238 TGK 240 (282)
T ss_dssp CHH
T ss_pred Ccc
Confidence 654
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=144.66 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=97.7
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-cCCccEEEEcCCHHHHHHHHHHHHHhhhh-
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPA- 82 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~- 82 (436)
.++++|.+++..+.. ++++++.+|||+|||..+.+++++.....+ ..+.++++++|++.++.|+++.+...+..
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 368899888887764 789999999999999877777776554432 12447999999999999998888765432
Q ss_pred hCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhh
Q 013778 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162 (436)
Q Consensus 83 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h 162 (436)
.+..++....... .....+++|+|+||+++.+.+.. .+++++++|+||+|
T Consensus 137 ~~~~~g~~~~~~~--------------------------~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah 186 (235)
T 3llm_A 137 PGKSCGYSVRFES--------------------------ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIH 186 (235)
T ss_dssp TTSSEEEEETTEE--------------------------ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTT
T ss_pred cCceEEEeechhh--------------------------ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCc
Confidence 1222221110000 00113458999999999998875 37899999999999
Q ss_pred HH-hhHhHh-hhHHHHHhh
Q 013778 163 RL-LREAYQ-AWLPTVLQL 179 (436)
Q Consensus 163 ~~-~~~~~~-~~~~~i~~~ 179 (436)
.+ .+.++. ..+..+...
T Consensus 187 ~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 187 ERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHhh
Confidence 85 555554 345555543
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=4.8e-18 Score=146.44 Aligned_cols=116 Identities=28% Similarity=0.296 Sum_probs=91.6
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|+++|.+++..+.. ++++++++|||+|||.+++.++.. .+.+++|++|+++|+.||.+.+..+ +
T Consensus 93 ~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINE-------LSTPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHH-------SCSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHH-------cCCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 689999999988764 567999999999999987766553 2457999999999999999998873 6
Q ss_pred ce-EEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013778 85 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 85 ~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
.. +..+.|+... ..+|+|+|++.+...... ....++++|+||||+
T Consensus 158 ~~~v~~~~g~~~~------------------------------~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~ 203 (237)
T 2fz4_A 158 EEYVGEFSGRIKE------------------------------LKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHH 203 (237)
T ss_dssp GGGEEEESSSCBC------------------------------CCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSC
T ss_pred CCeEEEEeCCCCC------------------------------cCCEEEEeHHHHHhhHHH----hcccCCEEEEECCcc
Confidence 66 7777776531 238999999998776553 124589999999999
Q ss_pred HhhHhH
Q 013778 164 LLREAY 169 (436)
Q Consensus 164 ~~~~~~ 169 (436)
+.+..+
T Consensus 204 l~~~~~ 209 (237)
T 2fz4_A 204 LPAESY 209 (237)
T ss_dssp CCTTTH
T ss_pred CCChHH
Confidence 866544
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.73 E-value=1.8e-17 Score=145.29 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=94.0
Q ss_pred CcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhh-cccceeEEEeccccchHHHHHHHHHHhcC-Cee-EEE
Q 013778 271 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLV 345 (436)
Q Consensus 271 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv 345 (436)
...|...+.+++... .+.++||||++...+..+...|.+. + +.+..+||+++..+|.++++.|++| +.+ +|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~ 170 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVL 170 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC---SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 456777888887765 6789999999999999999999874 5 7788899999999999999999998 677 789
Q ss_pred ecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013778 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 346 ~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
+|.++++|+|++.+++||++++||++..+.|++||++|.|+.+.|.++
T Consensus 171 st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 171 SVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp ECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred ehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 999999999999999999999999999999999999999988766443
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.51 E-value=4.5e-07 Score=89.75 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=54.5
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
..|.+.|.+|+..++. ++.-.+|.||+|||||.+..-.+...+. .+.++|+++||..-++++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVK----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 4688999999998874 2345899999999999986655554443 3458999999999999998887654
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.46 E-value=4.3e-07 Score=88.88 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=52.1
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh-hcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013778 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.+.|.+|+..++. ++.+++.+++|||||.+... ++..+... ...+.++++++||...+.++.+.+...+...+
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~-ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAK-LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHH-HHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHH-HHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 5779988887763 78899999999999965322 22222211 12445899999999999999888776655443
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.27 E-value=8.1e-06 Score=80.32 Aligned_cols=70 Identities=21% Similarity=0.213 Sum_probs=53.4
Q ss_pred CCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013778 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+..+.+.|.+|+..++. +...++.+|+|||||.+....+. .+... .+.++++++||...++++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~-~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVY-HLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHH-HHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHH-HHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 34678999999988764 56789999999999987544333 33321 4558999999999999988877654
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.25 E-value=1.1e-06 Score=83.23 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=51.8
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCC-cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHH
Q 013778 1 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~-~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 75 (436)
|.|..|++.|.+++..+...+..++ .+++.|+.|||||.++. .+...+...+ ..++++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~--~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG--ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT--CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC--CceEEEecCcHHHHHHHHhh
Confidence 4678899999999998765443343 89999999999998653 3444444322 23699999998877655543
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=2.1e-05 Score=79.21 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=53.9
Q ss_pred CCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013778 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+..+.+.|.+|+..++. +.-.+|.||+|||||.+....+...+.. ++.++++++||...++++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI---HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34678999999988763 5668999999999998765444333322 3458999999999999998888765
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.13 E-value=2.3e-05 Score=78.83 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=52.6
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
..+.+.|.+|+..++. +.-.++.||+|||||.+....+ ..+... .+.++++++||...++++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i-~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIV-YHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHH-HHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHH-HHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4578999999988764 5678999999999998754433 333321 3458999999999999888877654
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.96 E-value=1.7e-05 Score=76.75 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=46.8
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHH
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 74 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 74 (436)
.+.+.|.+++..+.. ++.+++.+|+|||||.++.. +...+.. .+.++++++||...+..+.+
T Consensus 189 ~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~-l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKA-VADLAES---LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHH-HHHHHHH---TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHH-HHHHHHh---cCCeEEEecCcHHHHHHhHh
Confidence 478899999888763 67899999999999986433 3333333 45589999999988876554
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.60 E-value=0.0012 Score=58.01 Aligned_cols=128 Identities=15% Similarity=0.096 Sum_probs=86.7
Q ss_pred CcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC
Q 013778 271 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348 (436)
Q Consensus 271 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 348 (436)
...|...+..++... .+.++|||+...+...-+.+++...+ +....+.|.....+ . . -.++.+.+.+.|.
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~---~~y~RlDG~~~~~~-~-k---~~~~~~~i~Llts 178 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNK---VHIKRYDGHSIKSA-A-A---ANDFSCTVHLFSS 178 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSS---CEEEESSSCCC------------CCSEEEEEEES
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCC---CceEeCCCCchhhh-h-h---cccCCceEEEEEC
Confidence 456777777766544 46699999999999999999998765 88888888744322 1 1 1244555555566
Q ss_pred CcccccC-----CCCCCeEEEecCCCChhHH-HHHhhhcccC--CC--CceEEEEecchhHHHHHHHH
Q 013778 349 AMTRGMD-----VEGVNNVVNYDKPAYIKTY-IHRAGRTARA--GQ--LGRCFTLLHKDEVKRFKKLL 406 (436)
Q Consensus 349 ~~~~Gid-----i~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~--~~--~g~~~~~~~~~~~~~~~~~~ 406 (436)
..+.|+| +...+.||.+|+.|++..= +|.+-|+.|. |+ .-.+|.++.....++..-.+
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 6666776 6779999999999998875 9999998886 32 35677777766555544333
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.56 E-value=0.00012 Score=72.65 Aligned_cols=72 Identities=19% Similarity=0.118 Sum_probs=55.7
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
..|++.|.+|+.. .+..++|.|+.|||||.+...-+...+...+.+..+++++++|+..+.++.+.+.....
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999887652 25779999999999999866656555554333445899999999999999988887653
No 103
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.39 E-value=0.0004 Score=69.60 Aligned_cols=82 Identities=18% Similarity=0.143 Sum_probs=59.7
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013778 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..|++.|.+|+.. .+..++|.|+.|||||.+...-+...+...+.+..++|+++.|+..+.++.+.+.......
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 5789999888653 2578999999999999986655555555433344589999999999999888887765321
Q ss_pred --CceEEEec
Q 013778 84 --GLSVGLAV 91 (436)
Q Consensus 84 --~~~v~~~~ 91 (436)
++.+.+++
T Consensus 84 ~~~~~v~Tfh 93 (724)
T 1pjr_A 84 AEDVWISTFH 93 (724)
T ss_dssp GTTSEEEEHH
T ss_pred ccCcEEeeHH
Confidence 34454443
No 104
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.35 E-value=0.0004 Score=69.14 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=60.1
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh-
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 83 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~- 83 (436)
.|++.|.+++.. .+..++|.|+.|||||.+...-+...+...+.+..++|+++.|+..+.++.+.+...+...
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 478999888663 2578999999999999986665665555533345689999999999999998888765432
Q ss_pred --CceEEEecc
Q 013778 84 --GLSVGLAVG 92 (436)
Q Consensus 84 --~~~v~~~~~ 92 (436)
++.+.++++
T Consensus 76 ~~~~~v~Tfhs 86 (673)
T 1uaa_A 76 ARGLMISTFHT 86 (673)
T ss_dssp TTTSEEEEHHH
T ss_pred ccCCEEEeHHH
Confidence 345544443
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.10 E-value=0.00064 Score=62.67 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=32.6
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013778 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
+-.++.|+.|+|||... .+.+.. .+.++++||++++.++.+.+.
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~-----~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF-----EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT-----TTCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc-----CCeEEEeCCHHHHHHHHHHhh
Confidence 34678999999999853 222211 368999999999988877664
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.91 E-value=0.0027 Score=51.78 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=27.2
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
++=.++.+|+|+|||..++-.+.... ..+.+++++.|...
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~----~~g~kV~v~k~~~d 47 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK----IAKQKIQVFKPEID 47 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEEC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----HCCCEEEEEEeccC
Confidence 45567899999999987554444332 25568999999853
No 107
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.86 E-value=0.0026 Score=52.27 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=26.4
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
+.=.++.+|.|+|||..++-.+.. .. ..+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r-~~---~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRR-GI---YAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH-HH---HTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH-HH---HcCCceEEEEeccC
Confidence 344678999999999764444332 22 24568999999876
No 108
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.84 E-value=0.02 Score=52.04 Aligned_cols=72 Identities=14% Similarity=0.014 Sum_probs=52.8
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhh
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 82 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 82 (436)
.|.|+|...+..+.. .+.+++..+-+.|||.+....++..+.. .++..+++++|+...+..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 589999988876531 3558899999999998765555443332 25567999999999998888777766543
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.71 E-value=0.0034 Score=51.68 Aligned_cols=39 Identities=23% Similarity=0.098 Sum_probs=26.3
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
+=.++.+++|+|||..++-.+.... ..+.+++++.|.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~----~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQ----FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH----HTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH----HCCCEEEEEEeccC
Confidence 3345899999999987554444332 25568999999875
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.69 E-value=0.0035 Score=50.88 Aligned_cols=40 Identities=23% Similarity=0.095 Sum_probs=26.7
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
++-.++.+|+|+|||..++-.+..... .+.+++++.|...
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~----~g~~v~~~~~~~d 42 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL----GKKKVAVFKPKID 42 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH----TTCEEEEEEEC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeeccc
Confidence 455789999999999875444433322 3457999988853
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.62 E-value=0.0024 Score=53.39 Aligned_cols=40 Identities=23% Similarity=0.132 Sum_probs=27.5
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
+.-.++.+++|+|||..++-.+..... .+.+++++.|...
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~----~g~kVli~~~~~d 51 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY----ADVKYLVFKPKID 51 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEEECCC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh----cCCEEEEEEeccC
Confidence 455778999999999875444443322 4557999988753
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.56 E-value=0.0048 Score=55.50 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=30.8
Q ss_pred ccchhHHHHHhhhCCCCCC--C-cEEEECCCCchHHHHhHHHHH
Q 013778 6 LFPVQVAVWQETIGPGLFE--R-DLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~--~-~~i~~~~tGsGKT~~~~~~~~ 46 (436)
++|+|.++++.+...+.++ . ..++.||+|+|||..+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHH
Confidence 5799999988877655444 2 388999999999987554333
No 113
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.40 E-value=0.0076 Score=48.78 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCH
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~ 66 (436)
++=.++.+|+|+|||...+-.+.... ..+.+++++.|..
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~----~~~~kvl~~kp~~ 58 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQ----IAQYKCLVIKYAK 58 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH----HTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH----HcCCeEEEEcccc
Confidence 45567899999999965444333332 2456899999883
No 114
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.29 E-value=0.004 Score=60.75 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=54.0
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
.|.|+|...+..+. ..+..++..+-|+|||.+....++..+... ++..+++++|+...+.++.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 47999998887652 245688999999999987654444333332 45579999999999998888777766543
No 115
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.26 E-value=0.0067 Score=64.53 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=53.0
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh--cCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
.+++-|.+++.. .+++++|.|+.|||||.+.+--+...+..+. ....+++++++|++.+.++.+.+...+
T Consensus 10 ~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 588999777553 3689999999999999986655555555421 233589999999999998888777643
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.01 E-value=0.0082 Score=49.94 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.4
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
++-.++.+++|+|||..++-.+.... ..+.+++++.|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~----~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ----IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH----TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH----HCCCeEEEEeecCC
Confidence 45567899999999976544444332 35668999998875
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0078 Score=53.24 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=19.6
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHH
Q 013778 23 FERDLCINSPTGSGKTLSYALPIVQTLS 50 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~ 50 (436)
.+.++++.+|+|+|||.++-. +...+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 357899999999999987544 334443
No 118
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.41 E-value=0.027 Score=49.71 Aligned_cols=19 Identities=16% Similarity=-0.165 Sum_probs=15.4
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
...++.+|.|+|||..+..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4688999999999976544
No 119
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.32 E-value=0.05 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.0
Q ss_pred CCCcEEEECCCCchHHHHhHH
Q 013778 23 FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~ 43 (436)
....+++.+|+|+|||..+-.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 346799999999999986543
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.25 E-value=0.18 Score=41.72 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.1
Q ss_pred CcEEEECCCCchHHHHhH
Q 013778 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
..+++.+|+|+|||..+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999998643
No 121
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.14 E-value=0.16 Score=45.15 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=23.4
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
...+++.+|+|+|||..+-. +...+.. .+..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~---~~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKK---RGYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHH---TTCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHH---CCCEEEEEEH
Confidence 46899999999999986433 3333322 1335666643
No 122
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.11 E-value=0.05 Score=54.57 Aligned_cols=82 Identities=11% Similarity=0.135 Sum_probs=68.6
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-CcccccCCCCCCeEEE
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVVN 364 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~Gidi~~~~~vi~ 364 (436)
+.+++|.+|++..+.+.++.+++.. ..+..+..++|+++..++...++.+.+|+.+|+|+|. .+...+++.+++.||+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 5689999999999999998887653 3358899999999999999999999999999999996 4556678888888876
Q ss_pred ecCC
Q 013778 365 YDKP 368 (436)
Q Consensus 365 ~~~~ 368 (436)
-...
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 5443
No 123
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.01 E-value=0.12 Score=48.23 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=24.8
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.+.+++.||+|+|||..+-. +...+... .++.+++++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~-~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHH-CCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEeeHH
Confidence 46799999999999986543 33333222 134456666443
No 124
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.041 Score=49.71 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=20.9
Q ss_pred HHHHhhhCCCCCC--CcEEEECCCCchHHHHhHH
Q 013778 12 AVWQETIGPGLFE--RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 12 ~a~~~~~~~~~~~--~~~i~~~~tGsGKT~~~~~ 43 (436)
++++.+...+..+ .++++.+|+|+|||..+-.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 3334444333344 5699999999999986433
No 125
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.90 E-value=0.073 Score=45.89 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.4
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.+..+++.+|+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999754
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.76 E-value=0.061 Score=52.34 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=41.0
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHH
Q 013778 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 72 (436)
.++.-|.++++.+.... ....++.|+-|.|||.+.-+.+. .+. ..++|.+|+..-+...
T Consensus 175 ~~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa~lG~~~a-~~~------~~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSALAGQLIS-RIA------GRAIVTAPAKASTDVL 233 (671)
T ss_dssp SCCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHHHHHHHHH-HSS------SCEEEECSSCCSCHHH
T ss_pred CCCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHHHHHHHHH-HHH------hCcEEECCCHHHHHHH
Confidence 45678999998877643 24578999999999965444333 221 1478899998866543
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.60 E-value=0.027 Score=45.32 Aligned_cols=36 Identities=17% Similarity=-0.103 Sum_probs=25.5
Q ss_pred chhHHHHHhhhCC---C--CCCCcEEEECCCCchHHHHhHH
Q 013778 8 PVQVAVWQETIGP---G--LFERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 8 ~~Q~~a~~~~~~~---~--~~~~~~i~~~~tGsGKT~~~~~ 43 (436)
+.|.++++.+... + ..++.+++.+|+|+|||..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 4677777766522 1 2367899999999999986543
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.58 E-value=0.12 Score=46.02 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=12.4
Q ss_pred CccEEEEehhhHHh
Q 013778 152 HLCYLVVDETDRLL 165 (436)
Q Consensus 152 ~~~~iIiDE~h~~~ 165 (436)
..+++++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 67899999999885
No 129
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.51 E-value=0.38 Score=45.27 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccC
Q 013778 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355 (436)
Q Consensus 276 ~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gid 355 (436)
..+...++. .+.++|+.+.|...++++.+.|++.+ +....... .. .+..| .+.|+...++.|+.
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~---i~~~~~~~-~~---------~~~~g--~v~i~~g~L~~GF~ 435 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIK---IAPQRIMR-LD---------EASDR--GRYLMIGAAEHGFV 435 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGT---CCCEECSC-GG---------GCCTT--CEEEEESCCCSCEE
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcC---CCceecCc-hh---------hcCCC--cEEEEEcccccCcc
Confidence 344444433 25689999999999999999999876 43332221 11 12234 56667778899999
Q ss_pred CCCCCeEEEec
Q 013778 356 VEGVNNVVNYD 366 (436)
Q Consensus 356 i~~~~~vi~~~ 366 (436)
+|..+.+|+..
T Consensus 436 ~p~~klaVITE 446 (483)
T 3hjh_A 436 DTVRNLALICE 446 (483)
T ss_dssp ETTTTEEEEEH
T ss_pred cCCCCEEEEEc
Confidence 99888888765
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.28 E-value=0.21 Score=45.54 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=16.2
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
...+++.+|+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 35699999999999986543
No 131
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.24 E-value=0.32 Score=45.62 Aligned_cols=51 Identities=6% Similarity=-0.150 Sum_probs=34.8
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCH
Q 013778 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~ 66 (436)
.++.+...+..+.-+++.|++|+|||..++..+...... .+.+++|++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSLEM 242 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEESSS
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEECCC
Confidence 456666556667789999999999998766555544332 233688887543
No 132
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.05 E-value=0.085 Score=46.95 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=15.5
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
.++++.||+|+|||..+-.
T Consensus 47 ~~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 3699999999999986433
No 133
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.04 E-value=0.16 Score=46.96 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCC-cc---cccCCCCCCe
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT---RGMDVEGVNN 361 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~~---~Gidi~~~~~ 361 (436)
.+.++||.+|+++.+.++++.+++....+..+..++|+.+..++...++.+..|+.+|+|+|+- +. .-++...++.
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 5678999999999999999999986545578999999999988888999999999999999952 21 1245556777
Q ss_pred EEEecC
Q 013778 362 VVNYDK 367 (436)
Q Consensus 362 vi~~~~ 367 (436)
+|+-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 776544
No 134
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.89 E-value=0.56 Score=43.76 Aligned_cols=50 Identities=12% Similarity=-0.126 Sum_probs=34.3
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013778 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.++.+...+..+.-+++.|++|+|||..++-.+...... .+.+++|++..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~slE 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSLE 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEESS
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEECC
Confidence 345566556667778999999999998766555544432 23468888754
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.85 E-value=0.24 Score=45.13 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
+..+++.+|+|+|||..+-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999986433
No 136
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.75 E-value=0.041 Score=45.23 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.1
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+++.+|+|+|||..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 6799999999999986543
No 137
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.54 E-value=0.13 Score=48.15 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.3
Q ss_pred CcEEEECCCCchHHHHhH
Q 013778 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
.++++++|+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999998643
No 138
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.32 E-value=0.13 Score=45.85 Aligned_cols=59 Identities=14% Similarity=-0.101 Sum_probs=38.0
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHH
Q 013778 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
.++.+...+..+.-+++.|++|+|||..++-.+..... .+.+++|++.... ..|+...+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSlEms-~~ql~~Rl 93 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSLEMS-AEQLALRA 93 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEESSSC-HHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCCCC-HHHHHHHH
Confidence 34555655666777899999999999876655554443 3446888875433 33444443
No 139
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.23 E-value=0.066 Score=46.91 Aligned_cols=46 Identities=11% Similarity=-0.122 Sum_probs=32.1
Q ss_pred CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 69 (436)
+..+ -+++.+|+|+|||..++..+......+ .+.+++|+.....+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGIT 71 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchhh
Confidence 3345 678999999999988766655544331 245799998766654
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.04 E-value=0.055 Score=41.75 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.+.++++.+|+|+|||..+
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 5688999999999999864
No 141
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.87 E-value=0.89 Score=38.53 Aligned_cols=119 Identities=14% Similarity=0.197 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc----c--cccCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----T--RGMDVE 357 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----~--~Gidi~ 357 (436)
...++||.+|+++.+.++++.++.... .+..+..++|+.+.......+ .+..+|+|+|. .+ . .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 355799999999999999988887632 247788888887765433322 24689999994 22 1 346777
Q ss_pred CCCeEEEecCC----CChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcC
Q 013778 358 GVNNVVNYDKP----AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411 (436)
Q Consensus 358 ~~~~vi~~~~~----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (436)
.++.+|+-... ++....+..+-+..+ ...-+++++..-...+.++.+...+
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~---~~~~~l~~SAT~~~~v~~~~~~~l~ 240 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIP---RDRKTFLFSATMTKKVQKLQRAALK 240 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSC---SSSEEEEEESSCCHHHHHHHHHHCS
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCC---CCCeEEEEeccCCHHHHHHHHHHCC
Confidence 78877764432 122222223322222 2344555555544556666665543
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.73 E-value=0.17 Score=45.94 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.3
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
.+++.||+|+|||..+-
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.62 E-value=0.48 Score=41.85 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.4
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
.++++.||+|+|||..+..
T Consensus 43 ~~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 3599999999999986443
No 144
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.62 E-value=2.3 Score=33.11 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=53.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
.+.++||.++++..+.++++.+... |+.+..++|+.+......... .......+|+|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMN-----------------EFKRGEYRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEC
Confidence 4458999999999998888887765 788999999876554421110 1112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEEeh
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
. . +. .++++.+.++||.-+
T Consensus 93 ~-~----~~--~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 93 D-V----AA--RGIDIENISLVINYD 111 (163)
T ss_dssp G-G----GT--TTCCCSCCSEEEESS
T ss_pred C-h----hh--cCCchhcCCEEEEeC
Confidence 2 2 22 356777888888644
No 145
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.58 E-value=0.084 Score=47.48 Aligned_cols=52 Identities=19% Similarity=-0.009 Sum_probs=33.1
Q ss_pred HHHhhhC--CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013778 13 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 13 a~~~~~~--~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
.++.++. .+..+.-++|.+|+|+|||..+...+..... .+.+++|+.....+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~----~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK----MGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH----TTCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEeccccc
Confidence 3455554 3444567889999999999875544443222 34468888765443
No 146
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.21 E-value=0.44 Score=50.25 Aligned_cols=80 Identities=11% Similarity=0.231 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhh-cccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-CcccccCCCCCCeEE
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 363 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~Gidi~~~~~vi 363 (436)
.+.+++|.+|+...+.+.++.+++. ...+..+..+++..+..++...++.+.+|+.+|+|+|. .+...+.+.+++.+|
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 3458999999999999999988754 33357888999999998999999999999999999995 566667888887776
Q ss_pred Ee
Q 013778 364 NY 365 (436)
Q Consensus 364 ~~ 365 (436)
+-
T Consensus 731 iD 732 (1151)
T 2eyq_A 731 VD 732 (1151)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 147
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.05 E-value=0.24 Score=51.84 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cccc---ccCCCCCCe
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTR---GMDVEGVNN 361 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~---Gidi~~~~~ 361 (436)
.+.++||.+|+++.+.++++.+++++..++.+..++|+.+..++...++.+.+|+.+|+|+|+ .+.. -+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 467899999999999999999999765567899999999998999999999999999999994 2211 145567888
Q ss_pred EEEecC
Q 013778 362 VVNYDK 367 (436)
Q Consensus 362 vi~~~~ 367 (436)
+|+-..
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 776543
No 148
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.89 E-value=0.089 Score=46.50 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=23.9
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
++++++.+|+|+|||..+...+...... .+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~---~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEK---KGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHH---SCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh---cCCcEEEEE
Confidence 5789999999999998754433332202 334566654
No 149
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.84 E-value=0.6 Score=38.61 Aligned_cols=120 Identities=8% Similarity=0.152 Sum_probs=71.8
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhccc--ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCC-c-----ccccCCCC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEG 358 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~-----~~Gidi~~ 358 (436)
..++||.+|+++.+.++++.+++.... +..+..++|+.+..+.. +.+.++..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999999998876432 47788888887765443 4455567899999941 2 23356777
Q ss_pred CCeEEEecCCCC--hhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHh
Q 013778 359 VNNVVNYDKPAY--IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409 (436)
Q Consensus 359 ~~~vi~~~~~~s--~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (436)
++.+|+-....- ...+...+.+..+.-..+.-+++++..-.....++.+..
T Consensus 159 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 211 (220)
T 1t6n_A 159 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 211 (220)
T ss_dssp CCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred CCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHH
Confidence 887776543211 123334444443433334445555543323334444443
No 150
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.69 E-value=0.25 Score=54.34 Aligned_cols=44 Identities=20% Similarity=0.086 Sum_probs=32.5
Q ss_pred CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013778 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
+..+..+++.+|+|+|||..+...+.+... .+.+++|+.....+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~----~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT----TTCCEEEECTTSCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEEccccc
Confidence 345688999999999999987666655443 34579998876544
No 151
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.49 E-value=0.059 Score=41.46 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=15.8
Q ss_pred CCCcEEEECCCCchHHHH
Q 013778 23 FERDLCINSPTGSGKTLS 40 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~ 40 (436)
.+.++++.+|+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 467899999999999975
No 152
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.90 E-value=0.22 Score=42.21 Aligned_cols=60 Identities=20% Similarity=0.085 Sum_probs=35.9
Q ss_pred HhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013778 15 QETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 15 ~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+.++. .+..+.-+++.+++|+|||..++-.+.+..... +.+++|++-... ..++.+.+..
T Consensus 20 D~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 20 DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp GGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSSC-HHHHHHHHHT
T ss_pred HHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeecccCC-HHHHHHHHHH
Confidence 44443 334467789999999999987665555544432 235777764433 3344444443
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.81 E-value=0.43 Score=36.81 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.3
Q ss_pred hCCCCCCCcEEEECCCCchHHHHh
Q 013778 18 IGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 18 ~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
+..+ .++.+++.+|+|+|||..+
T Consensus 31 l~~~-~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 31 LRHK-HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCCC-CCSEEEEESSSTTTTCHHH
T ss_pred HHhc-CCCEEEEECCCCCCHHHHH
Confidence 3444 6788999999999999764
No 154
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.80 E-value=3.8 Score=33.59 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=52.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEe
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 133 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~ 133 (436)
.+.++||.++++.-+..+++.+... |+.+..++|+.+......- .... ....+|+|+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~------------------~~~f~~g~~~vlva 87 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERV------------------LGAFRQGEVRVLVA 87 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHH------------------HHHHHSSSCCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHH------------------HHHHHCCCCeEEEe
Confidence 4558999999999998888877765 7889999999876554221 1112 234689999
Q ss_pred CchhHHHHhhcCCCcccCCccEEEE
Q 013778 134 TPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 134 T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
|. .+. .++++.++++||.
T Consensus 88 T~-----~~~--~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 88 TD-----VAA--RGLDIPQVDLVVH 105 (212)
T ss_dssp CT-----TTT--CSSSCCCBSEEEE
T ss_pred cC-----hhh--cCCCCccCcEEEE
Confidence 92 222 3466778888874
No 155
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.67 E-value=3.7 Score=31.97 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
++.++||.++++..+..+++.+... +..+..++|+.+......... .......+|+|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T 87 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMK-----------------EFRSGSSRILIST 87 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHH-----------------HHHcCCCEEEEEc
Confidence 4458999999999998888877764 788889999877554421110 1112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEEe
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
. .+. .++++.+.++||.-
T Consensus 88 ~-----~~~--~G~d~~~~~~Vi~~ 105 (165)
T 1fuk_A 88 D-----LLA--RGIDVQQVSLVINY 105 (165)
T ss_dssp G-----GGT--TTCCCCSCSEEEES
T ss_pred C-----hhh--cCCCcccCCEEEEe
Confidence 2 122 34667788888753
No 156
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.58 E-value=0.37 Score=40.25 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=31.3
Q ss_pred HHHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013778 12 AVWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 12 ~a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
..++.+.. .+..++-+++.+|+|+|||..+...+..... .+.+++++..
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~----~~~~v~~~~~ 59 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR----DGDPCIYVTT 59 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH----HTCCEEEEES
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH----CCCeEEEEEc
Confidence 34566664 4556778899999999999765444433322 2235777753
No 157
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.42 E-value=0.71 Score=38.42 Aligned_cols=116 Identities=7% Similarity=0.037 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc-----ccccCCCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM-----TRGMDVEGV 359 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~-----~~Gidi~~~ 359 (436)
.+.++||.+|+++.+.++++.+++....+..+..++|+....+... .+. ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999999999987656677888888776543332 233 3478999994 11 234667778
Q ss_pred CeEEEecCC----CC-hhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHh
Q 013778 360 NNVVNYDKP----AY-IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409 (436)
Q Consensus 360 ~~vi~~~~~----~s-~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (436)
+.+|+-... ++ ...+.....+. .+..-+++++..--....++.+..
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~ 219 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDV----RPDRQTVMTSATWPDTVRQLALSY 219 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHHTT
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhC----CcCCeEEEEEeeCCHHHHHHHHHH
Confidence 877764432 11 22222222222 223445555555444555555544
No 158
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.38 E-value=1.6 Score=35.46 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----Ccc-cccCCCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 359 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~-~Gidi~~~ 359 (436)
...++||.+|+++.+.++++.+++.... ..+..++|+.........+. ...+|+|+|. .+. ..+++..+
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 145 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPH-LKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRV 145 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTT-SCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhc-ceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhc
Confidence 3568999999999999999999887533 56777888776644333322 2578999994 122 23567778
Q ss_pred CeEEEecCCCC-hhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhc
Q 013778 360 NNVVNYDKPAY-IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 410 (436)
Q Consensus 360 ~~vi~~~~~~s-~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (436)
+.+|+-....- ...+...+.+..+.-..+.-+++++..-.....++.+...
T Consensus 146 ~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 146 EVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp SEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred eEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 87776443210 0012222222222222344556666554455566666554
No 159
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.38 E-value=0.53 Score=39.37 Aligned_cols=76 Identities=11% Similarity=0.151 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc--cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCC-c-----ccccCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVE 357 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~-----~~Gidi~ 357 (436)
...++||.+|+++.+.++++.+++... .+..+..++|+....+....+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 356899999999999999999987743 257788888888765543332 25799999952 2 1235666
Q ss_pred CCCeEEEec
Q 013778 358 GVNNVVNYD 366 (436)
Q Consensus 358 ~~~~vi~~~ 366 (436)
.++.+|+-.
T Consensus 166 ~~~~lViDE 174 (230)
T 2oxc_A 166 SIRLFILDE 174 (230)
T ss_dssp GCCEEEESS
T ss_pred cCCEEEeCC
Confidence 777776543
No 160
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.23 E-value=0.2 Score=40.86 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=19.0
Q ss_pred HHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013778 14 WQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
+...+..+-.++.+++.+|+|+|||..+
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3444443323346889999999999865
No 161
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=90.20 E-value=4 Score=32.10 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=53.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
++.++||.++++..+..+++.+... |+.+..++|+.+......... .......+|+|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vLvaT 88 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQ-----------------QFKDFQRRILVAT 88 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEES
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCcEEEEC
Confidence 4458999999999998888887765 788889999887554421110 1112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEEeh
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
. . ...++++.+.++||.=+
T Consensus 89 ~-~------~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 89 N-L------FGRGMDIERVNIAFNYD 107 (172)
T ss_dssp S-C------CSTTCCGGGCSEEEESS
T ss_pred C-c------hhcCcchhhCCEEEEEC
Confidence 3 1 12356677888887543
No 162
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.18 E-value=1 Score=41.58 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=22.3
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
-+++.+++|+|||.++...+.. +.. .+.+++++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~-l~~---~G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYF-YKK---RGYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH-HHH---TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH---cCCeEEEEe
Confidence 4678999999999875544432 322 344677665
No 163
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.08 E-value=0.34 Score=40.08 Aligned_cols=46 Identities=15% Similarity=-0.066 Sum_probs=31.1
Q ss_pred HHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013778 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 13 a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.++.++. .+..+.-+++.+|+|+|||..+...+. . .+.+++++.-.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~----~~~~v~~i~~~ 54 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L----SGKKVAYVDTE 54 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H----HCSEEEEEESS
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H----cCCcEEEEECC
Confidence 4566664 566677889999999999987554443 1 23367777643
No 164
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.01 E-value=0.087 Score=47.10 Aligned_cols=33 Identities=18% Similarity=0.020 Sum_probs=23.5
Q ss_pred hhHHHHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013778 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
.|.++...+...+..+.++++.+|+|+|||..+
T Consensus 31 g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 31 GQKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp SCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 344555555444445789999999999999764
No 165
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.91 E-value=0.76 Score=42.51 Aligned_cols=56 Identities=23% Similarity=0.106 Sum_probs=31.8
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc--CCHHHHHHHHHHHHHhhhhhCceEE
Q 013778 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVG 88 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~v~ 88 (436)
-+++.+++|+|||.++.-.+. .+.. .+.+++++. |.+.-+. +.+..+....++.+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~---~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQK---RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHT---TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHH---CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEE
Confidence 467899999999987655443 3332 344676665 3333332 334444444455543
No 166
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.70 E-value=3.6 Score=32.42 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
+..++||.++++..+..+++.+... |..+..++|+.+......... .......+|+|+|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~-----------------~f~~g~~~vLvaT 91 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQ-----------------RFRDGKEKVLITT 91 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHH-----------------HHHTTSCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEe
Confidence 4558999999999988888777654 788999999987655422111 1112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEE
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
. .+ ..++++...++||.
T Consensus 92 ~-----~~--~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 92 N-----VC--ARGIDVKQVTIVVN 108 (175)
T ss_dssp C-----SC--CTTTCCTTEEEEEE
T ss_pred c-----ch--hcCCCcccCCEEEE
Confidence 3 11 23567888888884
No 167
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.68 E-value=0.4 Score=42.19 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.5
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
..++++.+|+|+|||.++-.
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999987544
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.66 E-value=0.39 Score=38.49 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
...+++.+|+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999998643
No 169
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.65 E-value=0.44 Score=42.16 Aligned_cols=60 Identities=8% Similarity=-0.215 Sum_probs=38.4
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013778 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
.++.+...+..+.-+++.|++|+|||..++..+...... +.+++|++-... ..|+...+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~----g~~vl~~slE~s-~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLEMG-KKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT----TCEEEEEESSSC-HHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEECCCC-HHHHHHHHH
Confidence 455666556667789999999999998766555544332 246888875422 334444443
No 170
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.44 E-value=1.7 Score=35.26 Aligned_cols=120 Identities=10% Similarity=0.125 Sum_probs=68.6
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhccc--ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-C----cccc-cCCCC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-A----MTRG-MDVEG 358 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~----~~~G-idi~~ 358 (436)
..++||.+|+++.+.++++.+++.... +..+..++|+.+..+.. ..+ .+..+|+|+|. . +..+ .++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---Hhc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999999998876432 46778888877664332 222 34678999995 2 2222 46667
Q ss_pred CCeEEEecCCC-ChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhc
Q 013778 359 VNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 410 (436)
Q Consensus 359 ~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (436)
++.+|+-.... ....+...+.+..+.-.+..-+++++..--....++++...
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l 199 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHL 199 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHc
Confidence 77777643220 00112222222222112234455555554455556655543
No 171
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.40 E-value=0.33 Score=38.78 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.5
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
..++++.+|+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 46799999999999986543
No 172
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.33 E-value=4.8 Score=32.31 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=51.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCc
Q 013778 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135 (436)
Q Consensus 56 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~ 135 (436)
+.++||.++++.-+..+++.+... |+.+..++|+.+......... .......+|+|+|.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIE-----------------AFREGKKDVLVATD 112 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSCSEEEECH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCEEEEEcC
Confidence 447999999999999888877765 788899999877544421110 11123568999992
Q ss_pred hhHHHHhhcCCCcccCCccEEEEe
Q 013778 136 GRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 136 ~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
.+.+ ++++.+.++||.=
T Consensus 113 -----~~~~--Gldi~~v~~VI~~ 129 (191)
T 2p6n_A 113 -----VASK--GLDFPAIQHVINY 129 (191)
T ss_dssp -----HHHT--TCCCCCCSEEEES
T ss_pred -----chhc--CCCcccCCEEEEe
Confidence 2232 4667788888763
No 173
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.32 E-value=0.35 Score=40.84 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=35.5
Q ss_pred HHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013778 14 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 14 ~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
++.++. .+..++-+++.+|+|+|||..+...+..... .+.+++++.-... ..++.+.+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~----~~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK----MGEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH----TTCCEEEEESSSC-HHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEEccCC-HHHHHHHHH
Confidence 344432 3445677899999999999876554444432 3346888864433 334444443
No 174
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.75 E-value=0.92 Score=41.00 Aligned_cols=27 Identities=22% Similarity=0.110 Sum_probs=22.4
Q ss_pred hhCCCCCCCcEEEECCCCchHHHHhHH
Q 013778 17 TIGPGLFERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 17 ~~~~~~~~~~~i~~~~tGsGKT~~~~~ 43 (436)
+...+..|+.+.+.+|+|+|||..+..
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHH
Confidence 555677899999999999999986543
No 175
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=88.54 E-value=1 Score=37.86 Aligned_cols=119 Identities=10% Similarity=0.121 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----Ccc-cccCCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEG 358 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~-~Gidi~~ 358 (436)
.+.++||.+|+++.+.++.+.+++.. ..+..+..++|+.+..+....+. . ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 35679999999999999988887653 22467888888887765443333 2 478999994 222 2356777
Q ss_pred CCeEEEecCC----CChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcC
Q 013778 359 VNNVVNYDKP----AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411 (436)
Q Consensus 359 ~~~vi~~~~~----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (436)
++.+|+-... ++....+..+- +.-.+..-+++++..-.....++.+...+
T Consensus 177 ~~~lViDEah~l~~~~~~~~~~~i~---~~~~~~~q~~~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 177 TTYLVLDEADRMLDMGFEPQIRKIV---DQIRPDRQTLMWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp CCEEEETTHHHHHHTTCHHHHHHHH---TTSCSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred ccEEEEeCHHHHhhhCcHHHHHHHH---HhCCccceEEEEEeecCHHHHHHHHHHCC
Confidence 8877764432 12222222222 21123345566666555556666666544
No 176
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.43 E-value=0.22 Score=45.15 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHhH
Q 013778 23 FERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~ 42 (436)
...++++.+|+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998643
No 177
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=88.38 E-value=1.1 Score=37.67 Aligned_cols=119 Identities=9% Similarity=0.114 Sum_probs=64.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----Ccccc-cCCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEG 358 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~~G-idi~~ 358 (436)
.+.++||.+|+++.+.++++.+++... .+..+...+|+.... .....+..+..+|+|+|. .+..+ +++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 356899999999999999999987653 245666666665432 233455567789999993 23333 56667
Q ss_pred CCeEEEecCC----CCh-hHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcC
Q 013778 359 VNNVVNYDKP----AYI-KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411 (436)
Q Consensus 359 ~~~vi~~~~~----~s~-~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (436)
++.+|+-... ++. ..+.....+. ....-+++++..-.....++.+...+
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~l~ 227 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKL----NTSIQVVLLSATMPTDVLEVTKKFMR 227 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCS
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHCC
Confidence 7877764332 111 1222222222 23345566665544556666665543
No 178
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.00 E-value=0.11 Score=49.16 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=23.0
Q ss_pred hHHHHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013778 10 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 10 Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
|.++...+...+..+.++++.+|+|+|||..+
T Consensus 27 q~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 27 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 44444444444456789999999999999753
No 179
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.76 E-value=3.3 Score=33.10 Aligned_cols=76 Identities=22% Similarity=0.199 Sum_probs=44.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
++.++||.++++.-+..+++.+... |+.+..++|+.+....... .........+|+|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~-----------------~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEA-----------------LHQFRSGKSPILVAT 103 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHH-----------------HHHHHHTSSSEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHH-----------------HHHHHcCCCeEEEEc
Confidence 4568999999999998888877764 7888889988764433111 011112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEE
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
. .+ . .++++.+.++||.
T Consensus 104 ~-~~----~--~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 104 A-VA----A--RGLDISNVKHVIN 120 (185)
T ss_dssp C-------------CCCSBSEEEE
T ss_pred C-hh----h--cCCCcccCCEEEE
Confidence 3 22 2 3466778888775
No 180
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.59 E-value=0.78 Score=42.24 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=22.6
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013778 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
.+.+..++..++. ..+.-+++.+|||+|||.+
T Consensus 152 ~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 152 TAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHH
T ss_pred CHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHH
Confidence 3445566676642 3456688999999999975
No 181
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.44 E-value=0.7 Score=43.05 Aligned_cols=49 Identities=10% Similarity=-0.216 Sum_probs=34.5
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013778 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.++.+...+..+.-+++.|++|+|||..++-.+...... +.+++|++-.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEECC
Confidence 345555556567779999999999998766666655443 3468888744
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.05 E-value=0.68 Score=38.73 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHhH
Q 013778 23 FERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~ 42 (436)
.+..+++.+|+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998643
No 183
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.76 E-value=0.7 Score=41.47 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=33.4
Q ss_pred HHHhhhC--CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCH
Q 013778 13 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (436)
Q Consensus 13 a~~~~~~--~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~ 66 (436)
.++.++. .+..+.-+++.+|+|+|||..++..+..... .+.+++|+.-..
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~----~g~~vlyi~~E~ 99 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA----AGGIAAFIDAEH 99 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TTCCEEEEESSC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECCC
Confidence 3455555 4445677899999999999876655554432 344688887543
No 184
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.71 E-value=0.71 Score=40.63 Aligned_cols=33 Identities=30% Similarity=0.266 Sum_probs=23.3
Q ss_pred hHHHHHhhhCCCCCC--CcEEEECCCCchHHHHhH
Q 013778 10 QVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 10 Q~~a~~~~~~~~~~~--~~~i~~~~tGsGKT~~~~ 42 (436)
|.++.+.+...+..+ .++++.||+|+|||..+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHH
Confidence 555666655555444 369999999999998643
No 185
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.63 E-value=0.91 Score=39.63 Aligned_cols=49 Identities=10% Similarity=-0.065 Sum_probs=31.9
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013778 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
+++.+.-.+..++-+++.+|+|+|||..+...+...... .+.+++++..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~ 72 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAML 72 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEES
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 456666666678889999999999998654433322211 2336777754
No 186
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.63 E-value=0.23 Score=43.65 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.2
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
..++++.+|+|+|||.++-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999998643
No 187
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.56 E-value=0.55 Score=43.74 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=30.4
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHH
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 70 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 70 (436)
+.++++.++||+|||... ..++..+.. .+..++|+=|.-+...
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~---~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL---RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH---TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH---CCCcEEEEeCCCchhH
Confidence 578999999999999864 333333333 3446888888877753
No 188
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.49 E-value=2.4 Score=35.30 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc----cc--ccCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TR--GMDVE 357 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----~~--Gidi~ 357 (436)
.+.++||.+|+++.+.++++.+++.+. .+..+..++|+.+.......+ +..+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 356899999999999999999987653 346788888877665433322 4679999994 22 12 35666
Q ss_pred CCCeEEEecCCCC-hhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhc
Q 013778 358 GVNNVVNYDKPAY-IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 410 (436)
Q Consensus 358 ~~~~vi~~~~~~s-~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (436)
+++.+|+-....- -..+...+.+..+.-..+.-+++++..-...+.++.+...
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 224 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSL 224 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSC
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhC
Confidence 7777766433210 0011122222222222334455556554455555655543
No 189
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=86.25 E-value=11 Score=36.16 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=56.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
.+.++||.++++.-+..+++.+...+.. +..+..++|+.+......-. ........+|+|+|
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~-----------------~~f~~g~~~vLvaT 399 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLV-----------------KRFKKDESGILVCT 399 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHH-----------------HHHHHCSSEEEEEC
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHH-----------------HHHhcCCCCEEEEc
Confidence 5668999999999999999888876543 67888899988755442111 01112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEEeh
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
. .+. .++++.++++||.-.
T Consensus 400 ~-----~~~--~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 400 D-----VGA--RGMDFPNVHEVLQIG 418 (563)
T ss_dssp G-----GGT--SSCCCTTCCEEEEES
T ss_pred c-----hhh--cCCCcccCCEEEEEC
Confidence 3 222 357788898887554
No 190
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.21 E-value=0.75 Score=43.10 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHhH
Q 013778 23 FERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~ 42 (436)
...++++.+|+|+|||..+-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 34689999999999998653
No 191
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.11 E-value=0.8 Score=41.89 Aligned_cols=41 Identities=17% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
.+.++++.++||+|||...-..+... .. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HH---CCCEEEEEeCCcC
Confidence 46899999999999998654433333 22 4557888888755
No 192
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.85 E-value=0.95 Score=40.69 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=33.2
Q ss_pred HHhhhC--CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 14 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 14 ~~~~~~--~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
++.++. .+..+.-+++.+++|+|||..++..+..... .+.+++|+.....
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~----~g~~vlyid~E~s 102 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHA 102 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEESSCC
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeCCCC
Confidence 455553 3445677899999999999887665554433 3346888876433
No 193
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.59 E-value=0.56 Score=42.73 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
.+.+++.+|+|+|||..+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 478999999999999864
No 194
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.55 E-value=0.52 Score=43.54 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.6
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
.+.+++.+|+|+|||..+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 467999999999999864
No 195
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.48 E-value=0.88 Score=38.83 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.2
Q ss_pred CcEEEECCCCchHHHHhH
Q 013778 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
+.+++.+|+|+|||..+.
T Consensus 105 n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458899999999998754
No 196
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=85.44 E-value=1.6 Score=38.21 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=68.5
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcc--cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCC-c-----c-cccCCC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T-RGMDVE 357 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~-----~-~Gidi~ 357 (436)
..++||.+|+++.|.++++.++.... ....+....++....... ....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999999999887653 245666666655432111 345789999942 2 2 246777
Q ss_pred CCCeEEEecCC-----CChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcC
Q 013778 358 GVNNVVNYDKP-----AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411 (436)
Q Consensus 358 ~~~~vi~~~~~-----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (436)
.++++|+-... ........++-+.. ....-+++++..-......+.+....
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~---~~~~q~i~~SAT~~~~v~~~a~~~l~ 290 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRML---PRNCQMLLFSATFEDSVWKFAQKVVP 290 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTS---CTTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhC---CCCCEEEEEeccCCHHHHHHHHHHCC
Confidence 88888764432 12222333333332 23445666665544556666665543
No 197
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.35 E-value=0.45 Score=41.83 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
...++++.+++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999864
No 198
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=85.27 E-value=8.5 Score=32.30 Aligned_cols=121 Identities=11% Similarity=0.086 Sum_probs=71.5
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc----c-cccCCCCC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----T-RGMDVEGV 359 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----~-~Gidi~~~ 359 (436)
..++||.+|+++.+.++++.++... ..+..+..++|+.+..+.... . ....+|+|+|. .+ . ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 3589999999999999999888764 234667778887766443322 2 24679999994 22 1 23567777
Q ss_pred CeEEEecCC----CC-hhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcC
Q 013778 360 NNVVNYDKP----AY-IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411 (436)
Q Consensus 360 ~~vi~~~~~----~s-~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (436)
+.+|+-... ++ ...+.....+.......+.-+++++..-...+.++.+...+
T Consensus 176 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 176 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred CEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 877764432 11 22333333332222112444556665544556666666543
No 199
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.22 E-value=0.93 Score=40.92 Aligned_cols=51 Identities=16% Similarity=0.005 Sum_probs=33.7
Q ss_pred HHHhhhC--CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 13 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 13 a~~~~~~--~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
.++.++. .+..+.-+++.+++|+|||..++-.+..... .+.+++|+.....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~----~g~~vlyi~~E~s 113 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK----AGGTCAFIDAEHA 113 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TTCCEEEEESSCC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH----CCCeEEEEECCCC
Confidence 3455554 4445677889999999999876655554433 2346888875543
No 200
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=85.08 E-value=1.5 Score=46.57 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=43.4
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHh--------hcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013778 25 RDLCINSPTGSGKTLSYALPIVQTLSNR--------AVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~--------~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
...+|.|.-|||||++...-++..+... +....++|+||=|++-+.++.+.+...+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 4559999999999998776667666532 12334799999999999988888876654
No 201
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.03 E-value=0.58 Score=40.04 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=19.4
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013778 13 VWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
++..+. +..++.+++.+|||+|||..
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHH
Confidence 444443 44567789999999999975
No 202
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=84.87 E-value=14 Score=35.59 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=56.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
.+.++||.++++.-+..+++.+...+.. +..+..++|+.+......-. ........+|+|+|
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~-----------------~~F~~g~~~vLVaT 348 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLV-----------------KRFKKDESGILVCT 348 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHH-----------------HHHHHCSSEEEEEC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHH-----------------HHhhcCCCeEEEEc
Confidence 5568999999999999999888876543 67888899987755442111 01112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEEehh
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVVDET 161 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIiDE~ 161 (436)
. .+. .++++.++++||.-..
T Consensus 349 ~-----~~~--~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 349 D-----VGA--RGMDFPNVHEVLQIGV 368 (579)
T ss_dssp G-----GGT--SSCCCTTCCEEEEESC
T ss_pred c-----hhh--cCCCcccCCEEEEcCC
Confidence 3 222 3577888998886553
No 203
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.71 E-value=0.17 Score=44.59 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.2
Q ss_pred CcEEEECCCCchHHHHhH
Q 013778 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
..+++.+|+|+|||.++-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999998653
No 204
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.68 E-value=0.5 Score=41.86 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.4
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
+-++|.+|||+|||.++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999987544
No 205
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.65 E-value=0.6 Score=37.99 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=17.1
Q ss_pred CCCcEEEECCCCchHHHHhHH
Q 013778 23 FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~ 43 (436)
.++.+++.+++|+|||.++-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 467889999999999986543
No 206
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=84.47 E-value=0.79 Score=39.04 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.8
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
...+++.+|+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4678999999999998643
No 207
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.42 E-value=1.1 Score=37.18 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=18.9
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHH
Q 013778 26 DLCINSPTGSGKTLSYALPIVQTLS 50 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~ 50 (436)
++++.++.|+|||..++-.+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5889999999999986655554443
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.21 E-value=0.73 Score=40.39 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.+..+++.+|+|+|||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 4577999999999999864
No 209
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.15 E-value=0.54 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.9
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
+..+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 210
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.13 E-value=2 Score=41.70 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHH--hcCCeeEEEecC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF--REGKIQVLVSSD 348 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vlv~t~ 348 (436)
.+++||.+|+++.+++..+.|++.+ +.+..++++.+..++...+..+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5789999999999999999999876 8899999999998888888877 467899999996
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.12 E-value=0.65 Score=42.90 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
.+.+|+.+|+|+|||..+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 477999999999999864
No 212
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.10 E-value=0.98 Score=40.79 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.4
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
++.+++.+|+|+|||.++-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45799999999999986443
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.10 E-value=0.4 Score=42.91 Aligned_cols=34 Identities=24% Similarity=0.104 Sum_probs=21.8
Q ss_pred hHHHHHhhhCCCCCC--CcEEEECCCCchHHHHhHH
Q 013778 10 QVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 10 Q~~a~~~~~~~~~~~--~~~i~~~~tGsGKT~~~~~ 43 (436)
|.++++.+...+..+ .+.++.||+|+|||..+..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 455555444333334 3489999999999986543
No 214
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.06 E-value=2 Score=41.02 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 348 (436)
.+++||.+|++..+....+.+++.+ ..+..+++..+..++...+..+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5789999999999999999999876 7888999999988888888899999999999994
No 215
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=83.99 E-value=1.3 Score=35.78 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=28.8
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
...+++..++|.|||.+++-.++..+.. +.+++|+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~----G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH----GKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEE
Confidence 4678999999999999988777776654 45788884
No 216
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.97 E-value=0.81 Score=39.61 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
....+++.+|+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4577999999999999864
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.89 E-value=0.86 Score=42.02 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.5
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
.+.+++.+|+|+|||..+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999864
No 218
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=83.89 E-value=10 Score=33.01 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=51.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
.+.++||.++++.-+..+++.+... |+.+..++|+.+......-.. .......+|+|+|
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~-----------------~f~~g~~~vLVaT 85 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMG-----------------AFRQGEVRVLVAT 85 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHH-----------------HHHHTSCCEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHH-----------------HhhcCCceEEEEe
Confidence 3558999999999888877777654 788999999987554422111 1112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEE
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
. .+. .++++.++++||.
T Consensus 86 ~-----va~--~Gidi~~v~~VI~ 102 (300)
T 3i32_A 86 D-----VAA--RGLDIPQVDLVVH 102 (300)
T ss_dssp S-----TTT--CSTTCCCCSEEEE
T ss_pred c-----hhh--cCccccceeEEEE
Confidence 3 222 3466788888874
No 219
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.75 E-value=0.87 Score=37.98 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.5
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
.+++.+|+|+|||..+-
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998643
No 220
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=83.67 E-value=3.8 Score=34.88 Aligned_cols=116 Identities=11% Similarity=0.120 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC------Cc-ccccCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD------AM-TRGMDVE 357 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~------~~-~~Gidi~ 357 (436)
.+.++||.+|+++.+.++++.+++... ....+..+.|+....... ..+..+ .+|+|+|. +. ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---QKLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH---HHHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH---HHhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999999999999987642 345667777776654333 333344 89999993 11 1246777
Q ss_pred CCCeEEEecCC----CC-hhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHh
Q 013778 358 GVNNVVNYDKP----AY-IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409 (436)
Q Consensus 358 ~~~~vi~~~~~----~s-~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (436)
+++.+|+-... ++ ...+.....+. ....-+++++..-.....++.+..
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~~----~~~~q~l~~SAT~~~~v~~~~~~~ 253 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKLL----PTRRQTMLFSATQTRKVEDLARIS 253 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHHS----CSSSEEEEECSSCCHHHHHHHHHH
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHhC----CCCCeEEEEEecCCHHHHHHHHHH
Confidence 88877764322 11 12222222222 123345556655445556665544
No 221
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.52 E-value=1.2 Score=42.19 Aligned_cols=59 Identities=5% Similarity=-0.109 Sum_probs=37.2
Q ss_pred HHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHH
Q 013778 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
++.++..+..+.-++|.+++|+|||..++-.+...... .+.+++|++-... ..|+...+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEESSSC-HHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEeccCC-HHHHHHHH
Confidence 34455555567778999999999998766555544332 1446888875433 33444443
No 222
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.46 E-value=0.69 Score=43.91 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCchHHHH
Q 013778 23 FERDLCINSPTGSGKTLS 40 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~ 40 (436)
.+..+++.+|||||||.+
T Consensus 259 ~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp TTCCEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999975
No 223
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=83.25 E-value=2.3 Score=33.76 Aligned_cols=59 Identities=5% Similarity=-0.058 Sum_probs=38.5
Q ss_pred chhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013778 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 8 ~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
+-|..+...++.. ..+-.++.++-|++|+...+..++.. ....+.++.+|+|+..-..+
T Consensus 37 ~~~~~a~~~l~~s--~~~~~iv~g~ggs~~~~~~~a~L~~~---a~~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSVLAQD--RPSLAIVSGQGGAAGQRERVAELVMM---AREQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHH--SCCEECCBCSSCSHHHHHHHHHHHHH---HHHTTCCEEEECSTTHHHHH
T ss_pred ccchhHHHHHhcc--CCceEEEecccchHHHHHHHHHHHHH---HHhcCeEEEEEcCchHHHHH
Confidence 3466666665542 24567789999999998743333322 22366789999999876544
No 224
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.02 E-value=0.71 Score=39.71 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=15.9
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+++.+|+|+|||.++-.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 5799999999999986543
No 225
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.89 E-value=0.77 Score=37.41 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=14.6
Q ss_pred cEEEECCCCchHHHHhHH
Q 013778 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
-.++.+++|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 357999999999987544
No 226
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.88 E-value=0.83 Score=41.90 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=15.6
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
.+.+|+.+|+|+|||..+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 467999999999999864
No 227
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.80 E-value=0.78 Score=40.08 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=14.5
Q ss_pred cEEEECCCCchHHHHhHH
Q 013778 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
-++|.+|||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 467899999999986544
No 228
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=82.79 E-value=0.86 Score=36.35 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.7
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.++-+++.+|+|+|||..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567889999999999753
No 229
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=82.63 E-value=0.7 Score=40.45 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
+-++|.+|||+|||..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3467899999999986543
No 230
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.57 E-value=0.91 Score=36.26 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.4
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
.+.+++.+++|+|||.++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46789999999999986544
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=82.52 E-value=0.99 Score=36.83 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=17.7
Q ss_pred CCCCCCcEEEECCCCchHHHHh
Q 013778 20 PGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 20 ~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
.+..+.-+++.+|+|+|||..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 3456788999999999999754
No 232
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.43 E-value=5.4 Score=36.02 Aligned_cols=108 Identities=6% Similarity=0.140 Sum_probs=66.9
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhccc--ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc-----ccccCCCC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM-----TRGMDVEG 358 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~-----~~Gidi~~ 358 (436)
..++||.+|++..+.++++.+++.... +..+..++|+.+..... ..+.++..+|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH---HHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999999988876422 47788888888765443 344567789999994 22 23356777
Q ss_pred CCeEEEecCCC--ChhHHHHHhhhcccCCCCceEEEEecch
Q 013778 359 VNNVVNYDKPA--YIKTYIHRAGRTARAGQLGRCFTLLHKD 397 (436)
Q Consensus 359 ~~~vi~~~~~~--s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 397 (436)
++.+|+-.... ....+...+-+..+......-+++++..
T Consensus 153 ~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 193 (391)
T 1xti_A 153 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 193 (391)
T ss_dssp CSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESS
T ss_pred cCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEee
Confidence 88777644321 1123333333333333334445555543
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.41 E-value=0.74 Score=40.18 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.6
Q ss_pred CcEEEECCCCchHHHHhH
Q 013778 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
..+++.+|+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457888999999998643
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.38 E-value=0.77 Score=39.34 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
...+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4568999999999998643
No 235
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.26 E-value=1.2 Score=35.45 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCCcEEEECCCCchHHHHhH
Q 013778 23 FERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~ 42 (436)
.+..+++.+++|+|||.++-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45779999999999998643
No 236
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.14 E-value=0.79 Score=39.98 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
...+++.+|+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999864
No 237
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.02 E-value=0.82 Score=40.54 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=15.1
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||..+
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 67999999999999864
No 238
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=81.97 E-value=0.89 Score=41.53 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.1
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
..++++.+|+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998643
No 239
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=81.97 E-value=11 Score=34.31 Aligned_cols=76 Identities=22% Similarity=0.186 Sum_probs=52.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
.+.++||.++++..+.++++.+... |..+..++|+.+......... .......+|+|+|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~-----------------~f~~g~~~vlvaT 333 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALH-----------------QFRSGKSPILVAT 333 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSSCEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHH-----------------HHHcCCCCEEEEC
Confidence 4568999999999998888877764 788899999887554422110 1112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEE
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
. .+.. ++++.++++||.
T Consensus 334 ~-----~~~~--Gidip~v~~Vi~ 350 (417)
T 2i4i_A 334 A-----VAAR--GLDISNVKHVIN 350 (417)
T ss_dssp H-----HHHT--TSCCCCEEEEEE
T ss_pred C-----hhhc--CCCcccCCEEEE
Confidence 3 3333 466778888875
No 240
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.90 E-value=0.88 Score=40.32 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.8
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
...+++.+|+|+|||.++-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999998643
No 241
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=81.78 E-value=1.1 Score=47.40 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=30.1
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013778 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
-+|.|+.|||||.+.+--+...+..+ ..+.++++++|...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCcc
Confidence 37899999999998766666655553 24468999999864
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=81.61 E-value=0.93 Score=36.86 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=14.9
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.++.+.+.+|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3677899999999999753
No 243
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.52 E-value=0.93 Score=38.55 Aligned_cols=18 Identities=39% Similarity=0.154 Sum_probs=14.3
Q ss_pred cEEEECCCCchHHHHhHH
Q 013778 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
-+++.+|+|||||..+..
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 367899999999986533
No 244
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.50 E-value=1.2 Score=39.93 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=22.5
Q ss_pred hhHHHHHhhhCCC-CCC--CcEEEECCCCchHHHHh
Q 013778 9 VQVAVWQETIGPG-LFE--RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 9 ~Q~~a~~~~~~~~-~~~--~~~i~~~~tGsGKT~~~ 41 (436)
+|.++.+.+...+ ..+ .++++.||+|+|||..+
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHH
Confidence 3555655555544 332 45999999999999764
No 245
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.47 E-value=0.82 Score=42.38 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.6
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
.+.+|+.+|+|+|||..+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 477999999999999864
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=81.31 E-value=0.97 Score=37.07 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.5
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.+.-+++.+|+|+|||.++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3566889999999999753
No 247
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.23 E-value=1.5 Score=38.95 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.2
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
.++++.+|+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 68999999999999864
No 248
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=81.22 E-value=1.5 Score=36.94 Aligned_cols=31 Identities=29% Similarity=0.135 Sum_probs=21.4
Q ss_pred HhhhC-CCCCCCcEEEECCCCchHHHHhHHHH
Q 013778 15 QETIG-PGLFERDLCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 15 ~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~ 45 (436)
+.++. .+..++-+.+.+|+|+|||..+...+
T Consensus 20 D~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 20 DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp GGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 33443 34457788999999999998644433
No 249
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=81.08 E-value=1 Score=43.67 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=14.0
Q ss_pred cEEEECCCCchHHHH
Q 013778 26 DLCINSPTGSGKTLS 40 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~ 40 (436)
++++.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 250
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=81.00 E-value=0.87 Score=38.76 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
.+.+++.+|+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356899999999999764
No 251
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.98 E-value=0.74 Score=43.27 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.2
Q ss_pred CCCcEEEECCCCchHHHHhHH
Q 013778 23 FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~ 43 (436)
...++++.+|+|+|||.++-.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 457899999999999986543
No 252
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.59 E-value=1.5 Score=41.44 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=25.3
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013778 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.+.++++.++||||||...-..+...+........+++++=|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 3579999999999999864443443333322122234444444
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.49 E-value=1.9 Score=37.63 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=23.2
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
++.+++.+|+|+|||.++...+.. +... .+.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~-l~~~--~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI-SMLE--KHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH-HHHT--TCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHHh--cCCEEEEEe
Confidence 456788999999999875544332 2211 334666664
No 254
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=80.34 E-value=1.2 Score=40.15 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
...+++.+|+|+|||.++-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999998653
No 255
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.33 E-value=0.43 Score=42.63 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999754
No 256
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=80.13 E-value=0.67 Score=45.19 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=23.8
Q ss_pred hHHHHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013778 10 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 10 Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
|.++++.+...+..+..+++.+|+|+|||..+
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHH
Confidence 44555555545556789999999999999764
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=80.09 E-value=0.88 Score=36.54 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.4
Q ss_pred CCCcEEEECCCCchHHHH
Q 013778 23 FERDLCINSPTGSGKTLS 40 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~ 40 (436)
.+..+++.+|+|+|||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999975
No 258
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.06 E-value=1.5 Score=41.86 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=27.7
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCH
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~ 66 (436)
..++++.+.||||||...-..+...+........+++++=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4789999999999998755545544433222334555555654
No 259
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.06 E-value=1.2 Score=40.52 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=16.2
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
..++++.+|+|+|||.++-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999998643
No 260
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.03 E-value=2.8 Score=34.55 Aligned_cols=117 Identities=9% Similarity=0.106 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCC-c-----ccccCCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEG 358 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~-----~~Gidi~~ 358 (436)
...++||.+|+++.+.++++.++... ..+..+..++|+.+..+... .+. +.+|+|+|.- + ....++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 35689999999999999999888764 23467777888766543322 222 3789999942 1 23456667
Q ss_pred CCeEEEecCC----CCh-hHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcC
Q 013778 359 VNNVVNYDKP----AYI-KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411 (436)
Q Consensus 359 ~~~vi~~~~~----~s~-~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (436)
++.+|+-... ++. ..+.....+. .+..-+++++..-.....++.+....
T Consensus 156 ~~~iViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~ 209 (224)
T 1qde_A 156 IKMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMR 209 (224)
T ss_dssp CCEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEEESSCCHHHHHHHHHHCS
T ss_pred CcEEEEcChhHHhhhhhHHHHHHHHHhC----CccCeEEEEEeecCHHHHHHHHHHCC
Confidence 7777764432 122 2222222222 22344555555544555666665543
No 261
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=80.02 E-value=16 Score=33.14 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=53.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEe
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 133 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~ 133 (436)
.+.++||.++++.-+..+++.+... +..+..++|+.+..+... ..+.. ....+|+|+
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~g~~~vlv~ 322 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAA------------------VIERFREGKEKVLVT 322 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHH------------------HHHHHHTTSCSEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHH------------------HHHHHHCCCCcEEEE
Confidence 4458999999999998888888765 778888999887655422 11122 234689999
Q ss_pred CchhHHHHhhcCCCcccCCccEEEE
Q 013778 134 TPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 134 T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
|. .+. .++++.++++||.
T Consensus 323 T~-----~~~--~Gidip~~~~Vi~ 340 (412)
T 3fht_A 323 TN-----VCA--RGIDVEQVSVVIN 340 (412)
T ss_dssp CG-----GGT--SSCCCTTEEEEEE
T ss_pred cC-----ccc--cCCCccCCCEEEE
Confidence 93 223 3567888988884
No 262
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.87 E-value=2.7 Score=37.17 Aligned_cols=53 Identities=13% Similarity=-0.108 Sum_probs=31.8
Q ss_pred HHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh--hcCCccEEEEcCCH
Q 013778 14 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTR 66 (436)
Q Consensus 14 ~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~~lil~P~~ 66 (436)
++.++. .+..+.-+++.+|+|+|||..+...+....... +..+.+++|+.-..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 445553 344567789999999999987655544322110 00144788886554
No 263
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.83 E-value=2 Score=38.58 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.7
Q ss_pred CCcEEEECCCCchHHHH
Q 013778 24 ERDLCINSPTGSGKTLS 40 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~ 40 (436)
+..+++.+|||+|||..
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45788999999999975
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=79.82 E-value=0.8 Score=36.03 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=13.9
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
-+++.+++|+|||.++-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998643
No 265
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=79.77 E-value=1.4 Score=38.56 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=22.4
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013778 13 VWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
++..+.-.+..|+.+.|.+|+|+|||...
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHH
Confidence 45555556667888999999999999753
No 266
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=79.65 E-value=1.4 Score=36.90 Aligned_cols=53 Identities=9% Similarity=-0.178 Sum_probs=30.8
Q ss_pred HHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh--hcCCccEEEEcCC
Q 013778 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 65 (436)
Q Consensus 13 a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~~lil~P~ 65 (436)
.++.++. .+..++-+++.+|+|+|||..+...+...+... +..+..++++.-.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 3455553 344567789999999999987655444322211 0013357777543
No 267
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.58 E-value=1.2 Score=36.10 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.7
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.+.-+.+.+|+|+|||.++
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999753
No 268
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=79.47 E-value=1.2 Score=39.32 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.3
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+++.+|||+|||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3578999999999986544
No 269
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.45 E-value=1.4 Score=35.16 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.+..+++.+++|+|||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999864
No 270
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=79.10 E-value=1.6 Score=37.60 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.4
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45999999999999753
No 271
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=79.08 E-value=1.6 Score=37.03 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.6
Q ss_pred CcEEEECCCCchHHHHhH
Q 013778 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
..+++.+++|+|||..+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999998643
No 272
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=79.02 E-value=1.3 Score=35.96 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.8
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.+.-+.+.+|+|+|||..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999753
No 273
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=78.87 E-value=13 Score=36.46 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=56.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEe
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 133 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~ 133 (436)
.+.++||.++|+..+..+++.+... |+.+..++|+.+...... ..+.. ....+|+|+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~------------------~l~~f~~g~~~VLVa 501 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIE------------------IIRDLRLGKYDVLVG 501 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHH------------------HHHHHHHTSCSEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHH------------------HHHHHhcCCeEEEEe
Confidence 4558999999999988888777765 788888888776544321 11112 234689999
Q ss_pred CchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013778 134 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 134 T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
|. .+ ..++++.++++||+-+++.+
T Consensus 502 T~-----~l--~~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 502 IN-----LL--REGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp SC-----CC--STTCCCTTEEEEEETTTTCC
T ss_pred cc-----hh--hCCcccCCCCEEEEeCcccc
Confidence 93 22 24577888999998887643
No 274
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.86 E-value=2 Score=37.93 Aligned_cols=35 Identities=20% Similarity=0.061 Sum_probs=23.6
Q ss_pred HHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHH
Q 013778 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 13 a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
.++.++. .+..+.-+++.+++|+|||..++..+..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444553 3334566889999999999876655544
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=78.78 E-value=1.4 Score=34.65 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
+..+++.+|+|+|||.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999754
No 276
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=78.63 E-value=15 Score=36.15 Aligned_cols=80 Identities=16% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEe
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 133 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~ 133 (436)
.+.++||.++++..+..+++.+... |+.+..++|+.+...... +.+.. ....+|+|+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~------------------~~~~f~~g~~~VLva 495 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQA------------------LIRDLRLGHYDCLVG 495 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHH------------------HHHHHHTTSCSEEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHH------------------HHHHhhcCCceEEEc
Confidence 4558999999999988888777765 778888888776544321 11122 234689999
Q ss_pred CchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013778 134 TPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 134 T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
|. .+ ..++++.++++||+=+++.
T Consensus 496 T~-----~l--~~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 496 IN-----LL--REGLDIPEVSLVAILDADK 518 (664)
T ss_dssp SC-----CC--CTTCCCTTEEEEEETTTTS
T ss_pred cC-----hh--hcCccCCCCCEEEEeCCcc
Confidence 82 12 2457788899888877654
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=78.31 E-value=1.3 Score=34.93 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.8
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
+.-+++.+++|+|||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345789999999999864
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=78.30 E-value=1.6 Score=35.41 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.4
Q ss_pred CCCcEEEECCCCchHHHH
Q 013778 23 FERDLCINSPTGSGKTLS 40 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~ 40 (436)
.++-+++.+|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 467788999999999975
No 279
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.27 E-value=1.7 Score=36.76 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999753
No 280
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.01 E-value=11 Score=33.89 Aligned_cols=78 Identities=13% Similarity=0.248 Sum_probs=54.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEe
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 133 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~ 133 (436)
.+.++||.++++.-+..+++.+... +..+..++|+.+..+... ..+.. ....+|+|+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~g~~~vlv~ 299 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDR------------------LIDDFREGRSKVLIT 299 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHH------------------HHHHHHTTSCCEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHH------------------HHHHHHCCCCCEEEE
Confidence 4468999999999998888877765 778888999887554422 11122 234689999
Q ss_pred CchhHHHHhhcCCCcccCCccEEEEehh
Q 013778 134 TPGRLMDHINATRGFTLEHLCYLVVDET 161 (436)
Q Consensus 134 T~~~l~~~l~~~~~~~~~~~~~iIiDE~ 161 (436)
|. .+. .++++.++++||.-+.
T Consensus 300 T~-----~~~--~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 300 TN-----VLA--RGIDIPTVSMVVNYDL 320 (395)
T ss_dssp CG-----GGS--SSCCCTTEEEEEESSC
T ss_pred CC-----hhh--cCCCcccCCEEEEcCC
Confidence 93 222 4577888999886444
No 281
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.88 E-value=1.5 Score=39.46 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
...+++.+|+|+|||.++-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 282
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.59 E-value=1.5 Score=39.01 Aligned_cols=18 Identities=39% Similarity=0.292 Sum_probs=14.7
Q ss_pred cEEEECCCCchHHHHhHH
Q 013778 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
-++|.+|||+|||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 577999999999986543
No 283
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=77.58 E-value=1.8 Score=35.72 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
+-+++.+|+|+||+..+-.
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4467899999999987544
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=77.52 E-value=1.4 Score=34.90 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.5
Q ss_pred cEEEECCCCchHHHHh
Q 013778 26 DLCINSPTGSGKTLSY 41 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~ 41 (436)
-+++.+++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678999999999864
No 285
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=77.41 E-value=0.51 Score=42.08 Aligned_cols=33 Identities=30% Similarity=0.220 Sum_probs=21.9
Q ss_pred chhHHHHHhhhCC----CCCCC--cEEEECCCCchHHHH
Q 013778 8 PVQVAVWQETIGP----GLFER--DLCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~~~----~~~~~--~~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+..+ +..|- .++..+.||||||++
T Consensus 73 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 73 ISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp CCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred CCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeE
Confidence 4576776664332 22343 356799999999997
No 286
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=77.39 E-value=1.7 Score=35.93 Aligned_cols=21 Identities=29% Similarity=0.196 Sum_probs=16.0
Q ss_pred CCCCCCcEEEECCCCchHHHH
Q 013778 20 PGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 20 ~~~~~~~~i~~~~tGsGKT~~ 40 (436)
.+..++-+.+.+|+|+|||..
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHH
Confidence 344678899999999999974
No 287
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=77.31 E-value=0.66 Score=41.63 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=22.4
Q ss_pred chhHHHHHhhhCCC----C-CCCc--EEEECCCCchHHHH
Q 013778 8 PVQVAVWQETIGPG----L-FERD--LCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~~~~----~-~~~~--~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+..++ . .+.+ ++..+.||||||++
T Consensus 62 ~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp CCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHH
T ss_pred CCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEE
Confidence 45777777643322 2 2544 57899999999997
No 288
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=77.25 E-value=1.4 Score=34.53 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.0
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
.+++.+++|+|||.++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46899999999998643
No 289
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=77.22 E-value=1.8 Score=35.40 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.6
Q ss_pred CCCcEEEECCCCchHHHH
Q 013778 23 FERDLCINSPTGSGKTLS 40 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~ 40 (436)
.+.-+.|.+|+|+|||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345677999999999975
No 290
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=77.20 E-value=0.45 Score=42.70 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=21.5
Q ss_pred hhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHH
Q 013778 9 VQVAVWQETIG----PGLFER--DLCINSPTGSGKTLS 40 (436)
Q Consensus 9 ~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~ 40 (436)
-|.++++.+.. .++.|- .++..+.||||||++
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 36666665532 233453 366799999999997
No 291
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=77.19 E-value=0.78 Score=41.52 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=23.1
Q ss_pred cchhHHHHHhhhCC----CCCCCc--EEEECCCCchHHHH
Q 013778 7 FPVQVAVWQETIGP----GLFERD--LCINSPTGSGKTLS 40 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~----~~~~~~--~i~~~~tGsGKT~~ 40 (436)
..-|.+.++.+..+ +..|.+ ++..+.||||||++
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeE
Confidence 34577777754433 334543 56799999999997
No 292
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=77.03 E-value=1.2 Score=41.14 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.6
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
..++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999864
No 293
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=77.01 E-value=0.52 Score=41.66 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=21.8
Q ss_pred chhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHH
Q 013778 8 PVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+.. .+..|- .++..+.||||||++
T Consensus 56 ~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 56 TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceE
Confidence 446666665432 233453 366799999999997
No 294
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=76.99 E-value=1.8 Score=38.66 Aligned_cols=53 Identities=9% Similarity=-0.113 Sum_probs=31.9
Q ss_pred HHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh--hcCCccEEEEcCCH
Q 013778 14 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTR 66 (436)
Q Consensus 14 ~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~~lil~P~~ 66 (436)
++.++. .+..+.-+++.+|+|+|||..+...+....... +..+.+++|+.-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 455553 344456688999999999987655444322210 00244688887554
No 295
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=76.97 E-value=14 Score=33.28 Aligned_cols=119 Identities=8% Similarity=0.058 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----Ccc-cccCCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEG 358 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~-~Gidi~~ 358 (436)
.+.++||.+|++..+.++++.+++... .+..+..++|+........ . ..+..+|+|+|. .+. ...++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---R-LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---H-TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---H-hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 345899999999999999999887643 3567778888776543221 1 235689999993 122 2356667
Q ss_pred CCeEEEecCCC-ChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHH
Q 013778 359 VNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408 (436)
Q Consensus 359 ~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 408 (436)
++.+|+-.... ....+...+.+..+.-....-+++++..-......++..
T Consensus 164 ~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~ 214 (400)
T 1s2m_A 164 CSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVK 214 (400)
T ss_dssp CCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHH
T ss_pred CCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHH
Confidence 78777654321 112333334333332223344555555433344444443
No 296
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.95 E-value=3.7 Score=42.93 Aligned_cols=79 Identities=10% Similarity=0.267 Sum_probs=58.7
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc-cce----eEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cccccc-CCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRI----KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGM-DVEG 358 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~Gi-di~~ 358 (436)
.+.++||.+|+++.+.++++.+++... .+. .+..++|+.+..++....+.+.+ .+|+|+|+ .+..-+ ++..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 467899999999999999999987642 235 78999999998887777777776 89999994 222211 2556
Q ss_pred CCeEEEec
Q 013778 359 VNNVVNYD 366 (436)
Q Consensus 359 ~~~vi~~~ 366 (436)
++++|+-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77776543
No 297
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.92 E-value=1.8 Score=35.43 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=14.5
Q ss_pred EEEECCCCchHHHHhHHH
Q 013778 27 LCINSPTGSGKTLSYALP 44 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~ 44 (436)
+++.+|+|+||+..+-..
T Consensus 3 Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999875443
No 298
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=76.83 E-value=1.3 Score=40.10 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.0
Q ss_pred CCCCcEEEECCCCchHHHH
Q 013778 22 LFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 22 ~~~~~~i~~~~tGsGKT~~ 40 (436)
..++.+++.+|||+|||.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3467789999999999975
No 299
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.56 E-value=1.5 Score=38.65 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.6
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
...+++.+|+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999864
No 300
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=76.39 E-value=1.1 Score=40.04 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=21.8
Q ss_pred chhHHHHHhhh----CCCCCCCc--EEEECCCCchHHHH
Q 013778 8 PVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~----~~~~~~~~--~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+. ..+..|-+ ++..+.||||||++
T Consensus 59 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 59 CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp CCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceE
Confidence 35666666433 23334543 66799999999997
No 301
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=76.23 E-value=1.7 Score=35.82 Aligned_cols=76 Identities=11% Similarity=0.157 Sum_probs=49.4
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhccc-----ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----Cccc-ccC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMD 355 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~~-Gid 355 (436)
+.++||.+|+++.+.++++.+++.... ...+..++|+.+..+. .+.+ .+..+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 568999999999999999988776422 4667777777654321 1111 23578999994 2222 355
Q ss_pred CCCCCeEEEec
Q 013778 356 VEGVNNVVNYD 366 (436)
Q Consensus 356 i~~~~~vi~~~ 366 (436)
+..++.+|+-.
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 66677766543
No 302
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.19 E-value=1.6 Score=34.11 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=16.3
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
-+++++.++.|||||.++-.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHH
Confidence 37899999999999986543
No 303
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.16 E-value=1.5 Score=39.60 Aligned_cols=19 Identities=42% Similarity=0.553 Sum_probs=16.7
Q ss_pred CCCCcEEEECCCCchHHHH
Q 013778 22 LFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 22 ~~~~~~i~~~~tGsGKT~~ 40 (436)
..++.+++.+|||+|||..
T Consensus 173 ~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HTTCCEEEEESSSSCHHHH
T ss_pred hcCCEEEEECCCCCCHHHH
Confidence 3588999999999999974
No 304
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.04 E-value=1.4 Score=36.45 Aligned_cols=31 Identities=19% Similarity=0.015 Sum_probs=21.6
Q ss_pred HHHhhhC-CCCCCCcEEEECCCCchHHHHhHH
Q 013778 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 13 a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~ 43 (436)
.++.++. .+..++-+.+.+|+|+|||..+..
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHH
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 4455553 444567788999999999976433
No 305
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=75.93 E-value=2.2 Score=34.91 Aligned_cols=28 Identities=25% Similarity=0.065 Sum_probs=20.9
Q ss_pred hhHHHHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013778 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
.|..++..+ ..++-+.+.+|.|+|||..
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHH
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHH
Confidence 344556554 3478888999999999975
No 306
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=75.83 E-value=1.9 Score=34.50 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.5
Q ss_pred CcEEEECCCCchHHHH
Q 013778 25 RDLCINSPTGSGKTLS 40 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~ 40 (436)
+-+.+.+|+|+|||.+
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3467999999999975
No 307
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=75.79 E-value=25 Score=32.29 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=51.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEeCch
Q 013778 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPG 136 (436)
Q Consensus 58 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~ 136 (436)
++||.++++.-+..+++.+... |..+..++|+.+..+... ..+.. ....+|+|+|.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~------------------~l~~F~~g~~~vLvaT~- 358 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQ------------------ALRDFKNGSMKVLIATS- 358 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHH------------------HHHHHHTSSCSEEEECG-
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHH------------------HHHHHHcCCCcEEEEch-
Confidence 5999999999998888877764 788899999887554421 11112 23468999994
Q ss_pred hHHHHhhcCCCcccCCccEEEE
Q 013778 137 RLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 137 ~l~~~l~~~~~~~~~~~~~iIi 158 (436)
.+. .++++.++++||.
T Consensus 359 ----v~~--rGlDi~~v~~VI~ 374 (434)
T 2db3_A 359 ----VAS--RGLDIKNIKHVIN 374 (434)
T ss_dssp ----GGT--SSCCCTTCCEEEE
T ss_pred ----hhh--CCCCcccCCEEEE
Confidence 223 3577888988885
No 308
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.74 E-value=2.9 Score=45.55 Aligned_cols=51 Identities=18% Similarity=0.078 Sum_probs=36.5
Q ss_pred HHHHhhhC--CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCH
Q 013778 12 AVWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (436)
Q Consensus 12 ~a~~~~~~--~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~ 66 (436)
..++.++. .+..+..+++.+|+|+|||..++..+...+.. +.+++|++-..
T Consensus 20 ~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~----G~~vlYI~te~ 72 (1706)
T 3cmw_A 20 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEH 72 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTTS
T ss_pred HHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC----CCceEEEEecC
Confidence 34556654 45567889999999999999877766665543 34788887543
No 309
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.69 E-value=1.8 Score=34.39 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=24.8
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013778 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+++.+++|||||..+...+. . +.+++|+......-.++.+.+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~----~----~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG----D----APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC----S----CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh----c----CCCeEEEecCCCCCHHHHHHHHHH
Confidence 57899999999976433221 1 336888887654433444444433
No 310
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=75.61 E-value=1.1 Score=35.28 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=15.6
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.++-+.+.+|+|+|||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566889999999999753
No 311
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=75.52 E-value=2.1 Score=40.37 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
....+++.+|+|+|||.++
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3467999999999999864
No 312
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=75.46 E-value=1.7 Score=40.52 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=15.8
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
.+.+++.+|+|+|||.++-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999998643
No 313
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.39 E-value=23 Score=32.68 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=50.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEecc--------CcchhHHHHHhhccccccccccCCchhHHHh-hc
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELIKRPKLEAGICYDPEDVLQE-LQ 125 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 125 (436)
.+.++||.++++..+..+++.+... |+.+..++| +.+..... +.... ..
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~------------------~~~~~F~~ 417 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQK------------------LILDEFAR 417 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHH------------------HHHHHHHH
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHH------------------HHHHHHhc
Confidence 4668999999999888888777765 788888888 33322221 11111 12
Q ss_pred cCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhh
Q 013778 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162 (436)
Q Consensus 126 ~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h 162 (436)
...+|+|+|. .+ . .++++...++||+-+..
T Consensus 418 ~~~~vLv~T~-~~----~--~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 418 GEFNVLVATS-VG----E--EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp TSCSEEEECG-GG----G--GGGGSTTCCEEEESSCC
T ss_pred CCceEEEECC-cc----c--cCCCchhCCEEEEeCCC
Confidence 3468999992 22 2 35678888888865543
No 314
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.13 E-value=1.7 Score=39.59 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=14.9
Q ss_pred cEEEECCCCchHHHHhHHH
Q 013778 26 DLCINSPTGSGKTLSYALP 44 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~ 44 (436)
-++|.+|||+|||..+...
T Consensus 4 ~i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHH
Confidence 4678999999999865443
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=75.05 E-value=1.9 Score=34.92 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
+..+++.+|+|+|||.++
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567889999999999754
No 316
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=74.80 E-value=21 Score=32.28 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=52.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEe
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 133 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~ 133 (436)
...++||.++++.-+..+++.+... |..+..++|+.+..+...- .+.. ....+|+|+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~------------------~~~f~~g~~~vlv~ 332 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESI------------------MKEFRSGASRVLIS 332 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHH------------------HHHHHHTSSCEEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHH------------------HHHHHCCCCCEEEE
Confidence 3447999999999998888777765 7788889998875544211 1111 234689999
Q ss_pred CchhHHHHhhcCCCcccCCccEEEEe
Q 013778 134 TPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 134 T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
|. .+. .++++.++++||.-
T Consensus 333 T~-----~~~--~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 333 TD-----VWA--RGLDVPQVSLIINY 351 (410)
T ss_dssp CG-----GGS--SSCCCTTEEEEEES
T ss_pred CC-----hhh--CcCCcccCCEEEEE
Confidence 93 222 35678888888853
No 317
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=74.77 E-value=0.65 Score=41.76 Aligned_cols=34 Identities=26% Similarity=0.190 Sum_probs=22.4
Q ss_pred cchhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHH
Q 013778 7 FPVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLS 40 (436)
Q Consensus 7 ~~~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~ 40 (436)
..-|.+.++.+.. .+..|- .++..+.||||||++
T Consensus 62 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 62 NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceE
Confidence 3457666665432 233453 366799999999997
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=74.49 E-value=1.4 Score=35.15 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=15.9
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
+..+++.+++|||||.++-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678999999999986443
No 319
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=74.47 E-value=0.68 Score=41.36 Aligned_cols=35 Identities=29% Similarity=0.219 Sum_probs=22.7
Q ss_pred cchhHHHHHhhhC----CCCCCCc--EEEECCCCchHHHHh
Q 013778 7 FPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 41 (436)
Q Consensus 7 ~~~Q~~a~~~~~~----~~~~~~~--~i~~~~tGsGKT~~~ 41 (436)
..-|.+.++.+.. .+..|.+ ++..+.||||||++.
T Consensus 61 ~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 3457676666433 2234543 567999999999973
No 320
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.40 E-value=1.5 Score=39.72 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.4
Q ss_pred cEEEECCCCchHHHHh
Q 013778 26 DLCINSPTGSGKTLSY 41 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~ 41 (436)
.+++.+|+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 321
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.28 E-value=1.4 Score=44.21 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.3
Q ss_pred CCCcEEEECCCCchHHHHhHH
Q 013778 23 FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~ 43 (436)
...++++.+|+|+|||.++-.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 357899999999999987544
No 322
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=74.28 E-value=2.6 Score=36.27 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 45899999999999753
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.27 E-value=2 Score=34.35 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
+..+++.+++|+|||.++-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567899999999998643
No 324
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=74.11 E-value=0.67 Score=41.76 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=22.4
Q ss_pred chhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHH
Q 013778 8 PVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+.. .+..|- .++..+.||||||++
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 457777766532 233453 356799999999987
No 325
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=73.97 E-value=2.8 Score=37.93 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=20.6
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013778 13 VWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
++..+.-.+..++.+++.+|+|+|||..+
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHH
Confidence 33444334556778899999999999753
No 326
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=73.77 E-value=1.9 Score=36.51 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=23.0
Q ss_pred HHHHhhhCCCCC---CCcEEEECCCCchHHHHhH
Q 013778 12 AVWQETIGPGLF---ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 12 ~a~~~~~~~~~~---~~~~i~~~~tGsGKT~~~~ 42 (436)
.++..+.-.+.. ++.+++.+++|+|||.++-
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHH
Confidence 455555545555 8899999999999998643
No 327
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=73.75 E-value=1.8 Score=34.11 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.0
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
+..+++.+++|+|||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999764
No 328
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=73.69 E-value=2.9 Score=46.30 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=35.4
Q ss_pred HHHhhhC--CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013778 13 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 13 a~~~~~~--~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.++.++. .+..+.++++.+|+|+|||..+...+.+.+.. +.+++|++-.
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~----Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 1118 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTT
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEcc
Confidence 3455553 45567899999999999999877666666544 4478888744
No 329
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=73.65 E-value=2.4 Score=34.27 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCchHHHHhH
Q 013778 23 FERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~ 42 (436)
.+..+++.++.|+|||.++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668899999999998643
No 330
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=73.61 E-value=0.61 Score=42.01 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=22.3
Q ss_pred cchhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHH
Q 013778 7 FPVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLS 40 (436)
Q Consensus 7 ~~~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~ 40 (436)
..-|.+.++.+.. .+..|- .++..+.||||||++
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 3457676665432 233453 356799999999997
No 331
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.50 E-value=3 Score=36.96 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCchHHHH
Q 013778 23 FERDLCINSPTGSGKTLS 40 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~ 40 (436)
.++.+++.+|||+|||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578999999999999974
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=73.48 E-value=2.2 Score=33.60 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.3
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+++.+++|+|||.++-.
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3688999999999986533
No 333
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.25 E-value=0.8 Score=46.09 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.8
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
++++.+|||+|||.++-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998653
No 334
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.22 E-value=2.3 Score=34.82 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.5
Q ss_pred cEEEECCCCchHHHHhHH
Q 013778 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
.+++.+|+|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999986543
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=73.20 E-value=2 Score=34.79 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred CcEEEECCCCchHHHHhH
Q 013778 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
..+++.+++|+|||.++-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998643
No 336
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=73.12 E-value=0.76 Score=41.50 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=21.8
Q ss_pred chhHHHHHhhhCC----CCCCC--cEEEECCCCchHHHH
Q 013778 8 PVQVAVWQETIGP----GLFER--DLCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~~~----~~~~~--~~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+..+ +..|- .++..+.||||||++
T Consensus 79 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 79 SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCccee
Confidence 3476776654332 22343 466799999999997
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=72.90 E-value=1.9 Score=35.18 Aligned_cols=21 Identities=33% Similarity=0.164 Sum_probs=15.9
Q ss_pred CCCCCcEEEECCCCchHHHHh
Q 013778 21 GLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~ 41 (436)
+..+.-+.+.+++|+|||.++
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 334456779999999999753
No 338
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=72.88 E-value=2.4 Score=34.59 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.5
Q ss_pred CCCcEEEECCCCchHHHH
Q 013778 23 FERDLCINSPTGSGKTLS 40 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~ 40 (436)
.++-+.+.+|+|+|||..
T Consensus 19 ~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999974
No 339
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=72.81 E-value=2 Score=34.33 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.3
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
+.-+++.+++|+|||.++-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999998643
No 340
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=72.67 E-value=1.4 Score=39.32 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=15.5
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
..++++.+|+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 467999999999999864
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=72.52 E-value=2 Score=34.77 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCchHHHHhH
Q 013778 23 FERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~ 42 (436)
.+.-+.+.+|+|+|||.++-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35668899999999997643
No 342
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=72.45 E-value=2.4 Score=34.83 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.4
Q ss_pred cEEEECCCCchHHHHhHH
Q 013778 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
.+++.+|+|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986533
No 343
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.24 E-value=3.1 Score=33.33 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.6
Q ss_pred CcEEEECCCCchHHHH
Q 013778 25 RDLCINSPTGSGKTLS 40 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~ 40 (436)
+-+++.+|+|+|||.+
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3478999999999974
No 344
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=71.88 E-value=1.2 Score=38.50 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=29.0
Q ss_pred CCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-------cCCccEEEEcCCHH
Q 013778 19 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALVVLPTRD 67 (436)
Q Consensus 19 ~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~lil~P~~~ 67 (436)
..+..+.-+++.+|+|+|||..+...+. .+..+. ....++++++-...
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~-~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH-HHhcCCCcCCCccCCCccEEEEECCCC
Confidence 3344567789999999999987555443 232210 01246777765443
No 345
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=71.88 E-value=27 Score=30.87 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=52.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
.+.++||.++++.-+.++++.+... |..+..++|+.+......... .......+|+|+|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~~~~~vlv~T 295 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIR-----------------LFKQKKIRILIAT 295 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHH-----------------HHHTTSSSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEC
Confidence 4557999999999998888877765 788888999877554421110 1112346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEEeh
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
. .+.. ++++.+++++|.-+
T Consensus 296 ~-----~~~~--Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 296 D-----VMSR--GIDVNDLNCVINYH 314 (367)
T ss_dssp T-----THHH--HCCCSCCSEEEESS
T ss_pred C-----hhhc--CCCcccCCEEEEec
Confidence 3 1222 35677888887543
No 346
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=71.58 E-value=3.5 Score=39.31 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=32.6
Q ss_pred HHHHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 11 VAVWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 11 ~~a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
..+++.+.- .+..++-+++.+|+|+|||..+...++.-+... +...+++.
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~---~~g~i~v~ 75 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF---DEPGVFVT 75 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---CCCEEEEE
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEE
Confidence 346666665 566788899999999999987555334444432 22355554
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=71.50 E-value=2.8 Score=33.26 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=15.2
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+++.+++|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3578999999999986533
No 348
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=71.39 E-value=4.2 Score=37.58 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=23.7
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
..+++.+++|+|||.++...+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~----G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR----GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH----HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEe
Confidence 368899999999998765544443332 23677775
No 349
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=71.38 E-value=2.7 Score=34.76 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.9
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+++.+|.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34577889999999999974
No 350
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=71.27 E-value=3.9 Score=35.76 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=22.0
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+-+++.+|+|+|||.++...+.. +.. .+.+++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~-l~~---~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM-FVD---EGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-HHH---TTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHH-HHh---cCCEEEEEc
Confidence 34678999999999875443332 222 344666664
No 351
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=71.25 E-value=2.4 Score=33.92 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.7
Q ss_pred CcEEEECCCCchHHHHhH
Q 013778 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
..+++.+++|||||.++-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999998653
No 352
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=71.20 E-value=5.1 Score=34.97 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=22.5
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
++-+.+.+|+|+|||...-. +..+... .+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~--Lagll~~--~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAK--LGRYYQN--LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHH--HHHHHHT--TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHH--HHHHHHh--cCCEEEEEe
Confidence 45677899999999975333 3233332 344676664
No 353
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=71.18 E-value=23 Score=24.67 Aligned_cols=131 Identities=20% Similarity=0.279 Sum_probs=74.4
Q ss_pred EEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcc--cc-----cCCCCCCeE
Q 013778 290 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT--RG-----MDVEGVNNV 362 (436)
Q Consensus 290 ~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~--~G-----idi~~~~~v 362 (436)
.+||....+-...+.+.++..| ..+..+.++.+...|.+.++.|..--.++--.-+.-. +. --.|.+++|
T Consensus 5 fvvfssdpeilkeivreikrqg---vrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvv 81 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVV 81 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEE
Confidence 3566666666666666666555 7777777777777777777777754444332222110 00 124667777
Q ss_pred EEecCCCC--hhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcCCCCCCCCCC--hhhhhhhh
Q 013778 363 VNYDKPAY--IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP--SSLIESLR 428 (436)
Q Consensus 363 i~~~~~~s--~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 428 (436)
++...... +.+|+.-.-- +.-.+++++...+..+-+...+....++..+..++ +++++..+
T Consensus 82 vivttddkewikdfieeake-----rgvevfvvynnkdddrrkeaqqefrsdgvdvrtvsdkeelieqvr 146 (162)
T 2l82_A 82 VIVTTDDKEWIKDFIEEAKE-----RGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDKEELIEQVR 146 (162)
T ss_dssp EEEECCCHHHHHHHHHHHHH-----TTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEESSHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHHHHh-----cCcEEEEEecCCCchhHHHHHHHhhhcCceeeecCCHHHHHHHHH
Confidence 66654321 3344433221 12357777777776777777777777777666543 44555443
No 354
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=71.06 E-value=0.65 Score=41.69 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=22.1
Q ss_pred chhHHHHHhhhC----CCCCCCc--EEEECCCCchHHHH
Q 013778 8 PVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~~----~~~~~~~--~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+.. .+..|-+ ++..+.||||||++
T Consensus 67 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 67 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred CchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceE
Confidence 457776665443 2334543 56799999999997
No 355
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=71.02 E-value=2.5 Score=33.78 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.4
Q ss_pred cEEEECCCCchHHHHh
Q 013778 26 DLCINSPTGSGKTLSY 41 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~ 41 (436)
-+++.+|+|+|||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999753
No 356
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=70.42 E-value=4 Score=39.11 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.4
Q ss_pred CCCcEEEECCCCchHHHHh
Q 013778 23 FERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~ 41 (436)
.+..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999764
No 357
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=70.31 E-value=2.5 Score=37.70 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=21.2
Q ss_pred hhHHHHHhh---hCCCCCCCc--EEEECCCCchHHHHh
Q 013778 9 VQVAVWQET---IGPGLFERD--LCINSPTGSGKTLSY 41 (436)
Q Consensus 9 ~Q~~a~~~~---~~~~~~~~~--~i~~~~tGsGKT~~~ 41 (436)
-|.+.++.+ +..+..|-+ ++..+.||||||++.
T Consensus 65 ~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 65 TNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp CHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 455555543 333444544 567999999999974
No 358
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=70.19 E-value=2.9 Score=34.40 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
+..+++.+++|||||..+-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999986543
No 359
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=70.15 E-value=2.6 Score=33.67 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=14.4
Q ss_pred cEEEECCCCchHHHHhHH
Q 013778 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
.+++.+++|+|||..+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999986433
No 360
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=70.14 E-value=2.4 Score=35.15 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
...+++.+++|+|||.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356889999999999864
No 361
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=70.11 E-value=3.3 Score=34.16 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
...+++.+++|+|||.++-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999986543
No 362
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=70.09 E-value=2.3 Score=36.86 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.7
Q ss_pred cEEEECCCCchHHHHh
Q 013778 26 DLCINSPTGSGKTLSY 41 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~ 41 (436)
-+++.||+|+|||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 363
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=70.05 E-value=3 Score=32.60 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=15.1
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+++.+++|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999986433
No 364
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=70.01 E-value=2.5 Score=33.86 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=16.1
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
+..+++.+++|||||.++-.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45688999999999986533
No 365
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=69.88 E-value=5.1 Score=34.95 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=22.4
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
++-+.+.+|+|+|||...-. +..+... .+.++++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~--Lag~l~~--~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGK--LAHRLKN--EGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHH--HHHHHHH--TTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHH--HHHHHHH--cCCeEEEEe
Confidence 44577999999999976433 2222222 344677764
No 366
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.65 E-value=2.7 Score=39.99 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=15.8
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
+.+++.+|+|+|||.++-.
T Consensus 78 ~~lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5789999999999986433
No 367
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=69.60 E-value=4.1 Score=31.55 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.1
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..++-+.+.+|.|+|||..
T Consensus 30 i~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34566788999999999964
No 368
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=69.34 E-value=2.4 Score=37.84 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=21.1
Q ss_pred hhHHHHHhh---hCCCCCCCc--EEEECCCCchHHHHh
Q 013778 9 VQVAVWQET---IGPGLFERD--LCINSPTGSGKTLSY 41 (436)
Q Consensus 9 ~Q~~a~~~~---~~~~~~~~~--~i~~~~tGsGKT~~~ 41 (436)
-|.+.++.+ +..+..|-+ ++..+.||||||++.
T Consensus 66 ~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 66 TNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp CHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 455555442 333445644 567999999999974
No 369
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=69.26 E-value=6.3 Score=33.47 Aligned_cols=62 Identities=8% Similarity=-0.067 Sum_probs=36.1
Q ss_pred HHhhhCC-CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013778 14 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 14 ~~~~~~~-~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
++.++.. +..+..+++.+++|+|||..++..+.+.+. .+.+++|++=... ..++.+.+..++
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~----~Ge~~~~~~~~e~-~~~l~~~~~~~G 72 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK----SDNLVGMFSISYP-LQLIIRILSRFG 72 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH----TTCEEEEEECSSC-HHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH----CCCcEEEEEEeCC-HHHHHHHHHHcC
Confidence 4455543 334566778878888888554444454443 3446888775433 344556666653
No 370
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=69.16 E-value=2.8 Score=36.90 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=17.6
Q ss_pred CCcEEEECCCCchHHHHhHHHHH
Q 013778 24 ERDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+..+++.+|+|+|||..+...+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45578999999999987655444
No 371
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=69.04 E-value=3.7 Score=33.14 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.2
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+++.+++|+|||.++-.
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999986433
No 372
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=68.93 E-value=5.5 Score=35.10 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=22.2
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+-+.+.+++|+|||.++...+.. +.. .+.+++++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~-l~~---~g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANY-YAE---LGYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH-HHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH---CCCeEEEEe
Confidence 44678999999999875443332 222 344677764
No 373
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=68.83 E-value=2.9 Score=33.22 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=12.9
Q ss_pred cEEEECCCCchHHHH
Q 013778 26 DLCINSPTGSGKTLS 40 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~ 40 (436)
.+.+.+|+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999975
No 374
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=68.81 E-value=2.6 Score=39.46 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||..+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999864
No 375
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=68.59 E-value=4.2 Score=37.10 Aligned_cols=52 Identities=10% Similarity=-0.129 Sum_probs=29.8
Q ss_pred HHhhh-CCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh--hcCCccEEEEcCC
Q 013778 14 WQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 65 (436)
Q Consensus 14 ~~~~~-~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~~lil~P~ 65 (436)
++.++ ..+..+.-+.|.+|+|+|||..+...+....... +..+.+++|+.-.
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 34444 2333467788999999999987554333322211 0123467777643
No 376
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=68.54 E-value=2.3 Score=35.39 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=11.1
Q ss_pred CCCcEEEECCCCchHHHH
Q 013778 23 FERDLCINSPTGSGKTLS 40 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~ 40 (436)
.++-+.+.+|+|+|||.+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456678999999999975
No 377
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.42 E-value=3.9 Score=34.01 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.2
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
...+++.+++|+|||.++-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999986544
No 378
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=68.21 E-value=2.7 Score=33.56 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+++.+++|||||.++-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3578999999999986433
No 379
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=68.18 E-value=2.7 Score=33.83 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.4
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
...+++.+++|+|||.++-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3568899999999998643
No 380
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=68.10 E-value=3 Score=33.63 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.9
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
.+++.+++|+|||..+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36789999999998643
No 381
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=67.99 E-value=3.7 Score=32.95 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.6
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
++.+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 356789999999999753
No 382
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=67.97 E-value=3.5 Score=34.00 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.8
Q ss_pred CcEEEECCCCchHHHHhH
Q 013778 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
..+.+.+|+|||||.++-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998643
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=67.46 E-value=3.7 Score=33.40 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHhHH
Q 013778 23 FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~ 43 (436)
.+.-+++.++.|+|||.++-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 356688999999999986543
No 384
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=67.33 E-value=3.3 Score=33.50 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.7
Q ss_pred cEEEECCCCchHHHHh
Q 013778 26 DLCINSPTGSGKTLSY 41 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~ 41 (436)
.+++.+++|||||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999864
No 385
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=67.30 E-value=3.5 Score=36.80 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=22.0
Q ss_pred cchhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHH
Q 013778 7 FPVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLS 40 (436)
Q Consensus 7 ~~~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~ 40 (436)
..-|.+.++.+.. .+..|- .++..+.||||||++
T Consensus 67 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 67 TSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEE
Confidence 3456666665432 223453 366799999999997
No 386
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.13 E-value=3.6 Score=37.56 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=13.3
Q ss_pred cEEEECCCCchHHHHh
Q 013778 26 DLCINSPTGSGKTLSY 41 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~ 41 (436)
.++..+.||||||++.
T Consensus 143 tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 143 AIFAYGQTGSGKTFTM 158 (403)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCCceEe
Confidence 3567999999999974
No 387
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=67.07 E-value=3.6 Score=36.40 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.9
Q ss_pred cEEEECCCCchHHHH
Q 013778 26 DLCINSPTGSGKTLS 40 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~ 40 (436)
.++..+.||||||++
T Consensus 83 tifAYGqTGSGKTyT 97 (330)
T 2h58_A 83 CIFAYGQTGAGKTYT 97 (330)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEeECCCCCCCcEE
Confidence 366799999999997
No 388
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.93 E-value=1.1 Score=45.22 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.7
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
++++.+|||+|||.++-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68999999999998653
No 389
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=66.76 E-value=3.6 Score=36.85 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=22.0
Q ss_pred chhHHHHHhhh----CCCCCCCc--EEEECCCCchHHHH
Q 013778 8 PVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~----~~~~~~~~--~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+. ..+..|.+ ++..+.||||||++
T Consensus 84 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 84 STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp CCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceee
Confidence 34766666543 23334543 56799999999997
No 390
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=66.70 E-value=2.7 Score=35.20 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=17.0
Q ss_pred CCCCCCcEEEECCCCchHHHH
Q 013778 20 PGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 20 ~~~~~~~~i~~~~tGsGKT~~ 40 (436)
.+..|+-+.+.+|+|+|||..
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHH
Confidence 344578889999999999963
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=66.63 E-value=2.9 Score=34.29 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.4
Q ss_pred cEEEECCCCchHHHHhHH
Q 013778 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
.+++.+++|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999986533
No 392
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=66.63 E-value=3.5 Score=32.02 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=13.9
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
.+++.+++|||||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 36799999999998643
No 393
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=66.59 E-value=3.4 Score=33.57 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
+.-+++.+++|||||..+-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 34578999999999986543
No 394
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=66.57 E-value=56 Score=27.72 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=38.2
Q ss_pred CCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHH
Q 013778 33 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 99 (436)
Q Consensus 33 tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 99 (436)
..+||.... .-++..+.. .+.++||.+.+...+..+.+.+... .|+.+..++|+.+....
T Consensus 93 ~~s~K~~~L-~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R 152 (271)
T 1z5z_A 93 RRSGKMIRT-MEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKER 152 (271)
T ss_dssp TTCHHHHHH-HHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHH
T ss_pred ccCHHHHHH-HHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHH
Confidence 346776542 223322222 4558999999999887777766652 26778888888875443
No 395
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=66.43 E-value=3.3 Score=34.84 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=15.3
Q ss_pred CCCCCcEEEECCCCchHHHHh
Q 013778 21 GLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~ 41 (436)
+..+.-+.+.+|.|+|||.++
T Consensus 22 i~~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 333445678999999999764
No 396
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=66.29 E-value=8.7 Score=34.76 Aligned_cols=29 Identities=21% Similarity=0.126 Sum_probs=23.1
Q ss_pred HHHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013778 12 AVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 12 ~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
.+++ .+.++.+|+..+|.++.|+|||..+
T Consensus 164 raID-~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 164 RLID-LFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp HHHH-HHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred hhhh-hcccccCCceEEEecCCCCChhHHH
Confidence 4444 4556778999999999999999865
No 397
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=66.11 E-value=4.2 Score=34.14 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=15.9
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
...+++.+|+|+|||.++-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34688999999999986544
No 398
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=66.07 E-value=4.4 Score=40.94 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=16.6
Q ss_pred CCCCcEEEECCCCchHHHHh
Q 013778 22 LFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 22 ~~~~~~i~~~~tGsGKT~~~ 41 (436)
..+..+++.+|+|+|||..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 34578999999999999754
No 399
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=66.05 E-value=3.4 Score=32.89 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=15.8
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
+..+++.+++|+|||..+-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45678999999999986543
No 400
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=65.84 E-value=3 Score=31.99 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.4
Q ss_pred CcEEEECCCCchHHHH
Q 013778 25 RDLCINSPTGSGKTLS 40 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~ 40 (436)
.-.++.+|+|+|||..
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3468999999999975
No 401
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=65.80 E-value=3.4 Score=36.87 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=21.8
Q ss_pred chhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHH
Q 013778 8 PVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+.. .+..|- .++..+.||||||++
T Consensus 56 ~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp SCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeE
Confidence 356666665432 233453 366799999999997
No 402
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=65.74 E-value=3.7 Score=32.79 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=13.9
Q ss_pred EEEECCCCchHHHHhHH
Q 013778 27 LCINSPTGSGKTLSYAL 43 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~ 43 (436)
+++.++.|||||.++-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999986543
No 403
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=65.66 E-value=1.7 Score=43.25 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=51.2
Q ss_pred CcEEEEcCCchhHHHH-HHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Ccc-----------ccc
Q 013778 288 EKCIVFTSSVESTHRL-CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMT-----------RGM 354 (436)
Q Consensus 288 ~~~lvf~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~-----------~Gi 354 (436)
+++||.+|++..+.+. .+.+++.......+..++|+....++...+. +..+|+|+|. .+. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999999999 9999887655578999999887655433332 4689999993 222 224
Q ss_pred CCCCCCeEEEec
Q 013778 355 DVEGVNNVVNYD 366 (436)
Q Consensus 355 di~~~~~vi~~~ 366 (436)
.+..++.||+-.
T Consensus 133 ~~~~~~lvViDE 144 (699)
T 4gl2_A 133 QLSDFSLIIIDE 144 (699)
T ss_dssp CGGGCSEEEEES
T ss_pred ecccCcEEEEEC
Confidence 666778777643
No 404
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=65.36 E-value=3.2 Score=37.88 Aligned_cols=34 Identities=24% Similarity=0.145 Sum_probs=21.8
Q ss_pred chhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHHh
Q 013778 8 PVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLSY 41 (436)
Q Consensus 8 ~~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~~ 41 (436)
.-|.+.++.+.. .+..|- .++..+.||||||++.
T Consensus 133 ~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 133 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp CCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred CChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 446666665432 223353 4667999999999973
No 405
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=65.36 E-value=3.6 Score=32.50 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.3
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
+..+++.+++|+|||.++-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567899999999997643
No 406
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=65.35 E-value=3.6 Score=34.96 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.3
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
.-+++.|++|+|||..+-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 4578999999999986543
No 407
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=65.34 E-value=3.7 Score=33.26 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=12.9
Q ss_pred EEEECCCCchHHHHh
Q 013778 27 LCINSPTGSGKTLSY 41 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~ 41 (436)
+.+.+|.|||||.++
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999864
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=64.93 E-value=7.1 Score=34.98 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=22.4
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+.-+.+.+|+|+|||.++-. +..+... .+.++++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~--Lag~l~~--~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGK--LAHRLKN--EGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHH--HHHHHHH--TTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHH--HHhhccc--cCCEEEEec
Confidence 44577999999999976433 2222222 344677764
No 409
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=64.91 E-value=3 Score=34.91 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=16.6
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|+|+|||..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 44578889999999999964
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=64.88 E-value=3.8 Score=33.85 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=14.0
Q ss_pred EEEECCCCchHHHHhHH
Q 013778 27 LCINSPTGSGKTLSYAL 43 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~ 43 (436)
+++.+++|||||.++-.
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986543
No 411
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=64.75 E-value=4 Score=32.70 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=13.9
Q ss_pred EEEECCCCchHHHHhHH
Q 013778 27 LCINSPTGSGKTLSYAL 43 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~ 43 (436)
+++.++.|+|||.++-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999986543
No 412
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=64.64 E-value=3.7 Score=36.78 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=21.1
Q ss_pred hhHHHHHhhhC----CCCCCCc--EEEECCCCchHHHH
Q 013778 9 VQVAVWQETIG----PGLFERD--LCINSPTGSGKTLS 40 (436)
Q Consensus 9 ~Q~~a~~~~~~----~~~~~~~--~i~~~~tGsGKT~~ 40 (436)
-|.+.++.+.. .+..|.+ ++..+.||||||++
T Consensus 83 sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 83 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceE
Confidence 46666665432 2234543 56789999999997
No 413
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=64.62 E-value=7.3 Score=34.43 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+.-+.+.+|+|+|||.+.-. +..+... .+.++++..
T Consensus 129 g~vi~lvG~nGaGKTTll~~--Lag~l~~--~~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAK--LANWLKN--HGFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHH--HHHHHHH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHH--HHHHHHh--cCCEEEEEe
Confidence 34577899999999976333 2222222 344566663
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=64.57 E-value=4.2 Score=36.34 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=24.3
Q ss_pred HHHHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013778 11 VAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 11 ~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
..+++.+ -.+..|+.+.+.+|.|+|||..
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTL 87 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTL 87 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHH
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHH
Confidence 4677777 6677889999999999999975
No 415
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=64.53 E-value=3.7 Score=36.75 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=22.0
Q ss_pred chhHHHHHhhhC----CCCCCCc--EEEECCCCchHHHH
Q 013778 8 PVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~~----~~~~~~~--~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+.. .+..|-+ ++..+.||||||++
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceE
Confidence 457776655432 2334544 56799999999997
No 416
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=64.53 E-value=4.1 Score=33.19 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=16.2
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
+.-+++.++.|||||.++-.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999986544
No 417
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=64.43 E-value=3.3 Score=33.77 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=14.4
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
+.-+.+.+|+|+|||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445779999999999753
No 418
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=64.41 E-value=8.6 Score=30.12 Aligned_cols=17 Identities=24% Similarity=0.044 Sum_probs=13.6
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
.-+.+.++.|+|||...
T Consensus 5 ~~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLM 21 (169)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34678999999999753
No 419
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=64.19 E-value=3.5 Score=32.61 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=11.7
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013778 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
+..+++.+++|+|||.++-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35678999999999986433
No 420
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.98 E-value=3.9 Score=37.36 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=12.9
Q ss_pred cEEEECCCCchHHHH
Q 013778 26 DLCINSPTGSGKTLS 40 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~ 40 (436)
.++..+.||||||++
T Consensus 141 tifAYGqTGSGKTyT 155 (412)
T 3u06_A 141 CIFAYGQTGSGKTYT 155 (412)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEecCCCCCCeeE
Confidence 356799999999997
No 421
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=63.82 E-value=4.1 Score=34.24 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.5
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
..+++.+|+|+|||..+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56889999999999754
No 422
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=63.74 E-value=4.4 Score=33.26 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.4
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+++.+++|||||.++-.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678999999999986543
No 423
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=63.70 E-value=4.4 Score=37.47 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=22.9
Q ss_pred chhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHHh
Q 013778 8 PVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLSY 41 (436)
Q Consensus 8 ~~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~~ 41 (436)
.-|.+.++.+.. .+..|- .++..+.||+|||++.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 457777766543 223453 3667999999999973
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=63.50 E-value=2.8 Score=33.05 Aligned_cols=17 Identities=35% Similarity=0.245 Sum_probs=13.6
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+.+.+++|+|||..+
T Consensus 3 ~~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI 19 (171)
T ss_dssp CEEEEEESCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34678999999999754
No 425
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=63.43 E-value=18 Score=32.53 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc--------------CCHHHHHHHHH----------HHHHhhhh
Q 013778 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--------------PTRDLALQVKD----------VFAAIAPA 82 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~--------------P~~~l~~q~~~----------~~~~~~~~ 82 (436)
++..+.-|.|||.++.-.+......+. +++++- |...+..-... .+......
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~~g~----rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~~i~~ 222 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHANMGK----KVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLESCIKQ 222 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHHTC----CEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHHTCEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhCCC----CEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHHHhhc
Q ss_pred hCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013778 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 83 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
....+.++.++....... .+ +++.+..++..-. .+..+++||+|
T Consensus 223 ~~~~l~~l~~~~~~~~~~----------------------------~~---~~~~~~~ll~~l~--~~~~yD~VIID 266 (373)
T 3fkq_A 223 SQEGVSYFSSTKVALDIL----------------------------EI---SYADIDTLIGNIQ--GMDNYDEIIVD 266 (373)
T ss_dssp CTTSCEECCCCSSGGGGG----------------------------GC---CHHHHHHHHHHHH--HTSCCSEEEEE
T ss_pred CCCCEEEecCCCChHhHH----------------------------hC---CHHHHHHHHHHHH--hcCCCCEEEEe
No 426
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=63.27 E-value=3.3 Score=36.22 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.8
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+.+.+.+|+|+|||..
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 44578899999999999974
No 427
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.26 E-value=6.9 Score=39.27 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.3
Q ss_pred CCCcEEEECCCCchHHHHhHH
Q 013778 23 FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~ 43 (436)
.+.++++.+|+|+|||.++-.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHH
Confidence 357899999999999986544
No 428
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=63.00 E-value=3.8 Score=33.11 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.5
Q ss_pred cEEEECCCCchHHHHh
Q 013778 26 DLCINSPTGSGKTLSY 41 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~ 41 (436)
.+.+.+++|+|||.++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678999999999754
No 429
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=62.90 E-value=3.9 Score=36.96 Aligned_cols=34 Identities=24% Similarity=0.145 Sum_probs=22.1
Q ss_pred chhHHHHHhhhC----CCCCCC--cEEEECCCCchHHHHh
Q 013778 8 PVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLSY 41 (436)
Q Consensus 8 ~~Q~~a~~~~~~----~~~~~~--~~i~~~~tGsGKT~~~ 41 (436)
.-|.+.++.+.. .+..|. .++..+.||||||++.
T Consensus 113 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 113 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp CCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred CCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 456666665432 233453 4667999999999973
No 430
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=62.56 E-value=30 Score=32.35 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=35.7
Q ss_pred HHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc--CCHHHHHHHHHHHHH
Q 013778 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAA 78 (436)
Q Consensus 12 ~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~--P~~~l~~q~~~~~~~ 78 (436)
.+++. +.++.+|+...|.++.|+|||..++ +.+.+.+..+..++|+. -...-+.++.+.+..
T Consensus 151 kaID~-l~PigrGQR~~Ifg~~g~GKT~l~l----~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~ 214 (513)
T 3oaa_A 151 KAVDS-MIPIGRGQRELIIGDRQTGKTALAI----DAIINQRDSGIKCIYVAIGQKASTISNVVRKLEE 214 (513)
T ss_dssp HHHHH-HSCCBTTCBCEEEESSSSSHHHHHH----HHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeecc-ccccccCCEEEeecCCCCCcchHHH----HHHHhhccCCceEEEEEecCChHHHHHHHHHHhh
Confidence 45553 4567789999999999999998643 23333333443344443 333334445555444
No 431
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=62.54 E-value=6 Score=34.80 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.4
Q ss_pred CcEEEECCCCchHHHH
Q 013778 25 RDLCINSPTGSGKTLS 40 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~ 40 (436)
+-+++.++.|+|||..
T Consensus 5 ~v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEEESSSSSCHHH
T ss_pred cEEEEEecCCCCHHHH
Confidence 3468999999999974
No 432
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=62.52 E-value=5.8 Score=32.19 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=38.2
Q ss_pred CCcEEEEcCCchhHHH-HHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC
Q 013778 287 EEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 348 (436)
..++||.||+...+.+ +.+.++........+..++|+.....+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 6789999999999888 77777766554577888888665433222221 2468888883
No 433
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=62.50 E-value=4.9 Score=33.97 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=15.0
Q ss_pred CCcEEEECCCCchHHHHh
Q 013778 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
+..+.|.+|+|+|||.++
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456789999999999754
No 434
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.49 E-value=4.1 Score=38.45 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.6
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999854
No 435
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=62.28 E-value=4.3 Score=36.61 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=21.2
Q ss_pred chhHHHHHhhh---CCCCCCCc--EEEECCCCchHHHH
Q 013778 8 PVQVAVWQETI---GPGLFERD--LCINSPTGSGKTLS 40 (436)
Q Consensus 8 ~~Q~~a~~~~~---~~~~~~~~--~i~~~~tGsGKT~~ 40 (436)
.-|.+.++.+. ..+..|-+ ++..+.||||||++
T Consensus 95 ~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 95 SGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp CCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred ccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceE
Confidence 34666655432 23334543 56799999999997
No 436
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=62.11 E-value=9.5 Score=35.75 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=21.9
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEE
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 62 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil 62 (436)
+.-+.+.+++|+|||.++-. +..+... .+.++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~--LAgll~~--~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGK--LARQFEQ--QGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHH--HHHHHHH--TTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHH--HHHHhhh--cCCeEEEe
Confidence 34577999999999976433 2222222 34467776
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=62.07 E-value=7 Score=36.15 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=24.6
Q ss_pred HHHHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013778 11 VAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 11 ~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
..+++.+ -.+..|+.+.+.+|.|+|||..
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTL 173 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVL 173 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHH
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHH
Confidence 4577777 6777889999999999999975
No 438
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=61.68 E-value=4.6 Score=33.20 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.7
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|.|+|||..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578889999999999974
No 439
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=61.54 E-value=7.7 Score=34.59 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.4
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
++++.+++|+|||..+-
T Consensus 26 ~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAE 42 (359)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 38999999999998653
No 440
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=61.52 E-value=4.1 Score=32.09 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHhH
Q 013778 24 ERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~ 42 (436)
+..+++.++.|+|||..++
T Consensus 16 G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 5678999999999997643
No 441
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=61.45 E-value=15 Score=33.03 Aligned_cols=76 Identities=11% Similarity=0.219 Sum_probs=52.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc----c-cccCCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----T-RGMDVEG 358 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----~-~Gidi~~ 358 (436)
...++||.+|++..+.++++.+++.. ..+..+..++|+....+....+. ..+|+|+|. .+ . ..+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 45689999999999999999887754 23577888888887655444333 468999993 11 1 2345556
Q ss_pred CCeEEEec
Q 013778 359 VNNVVNYD 366 (436)
Q Consensus 359 ~~~vi~~~ 366 (436)
++++|+-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 77776643
No 442
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=61.30 E-value=1.5 Score=44.81 Aligned_cols=37 Identities=19% Similarity=0.007 Sum_probs=0.0
Q ss_pred hhHHHHHhhhCCCCCC-----------CcEEEECCCCchHHHHhHHHH
Q 013778 9 VQVAVWQETIGPGLFE-----------RDLCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~-----------~~~i~~~~tGsGKT~~~~~~~ 45 (436)
+|.++++.+...+... ..+++.+|||+|||.++-..+
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHH
No 443
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=61.08 E-value=5.5 Score=35.06 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=12.7
Q ss_pred EEEECCCCchHHHHh
Q 013778 27 LCINSPTGSGKTLSY 41 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~ 41 (436)
+.+.+|+|+|||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999764
No 444
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=60.87 E-value=3.5 Score=37.05 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=20.9
Q ss_pred cchhHHHHHhh---hCCCCCCCc--EEEECCCCchHHHH
Q 013778 7 FPVQVAVWQET---IGPGLFERD--LCINSPTGSGKTLS 40 (436)
Q Consensus 7 ~~~Q~~a~~~~---~~~~~~~~~--~i~~~~tGsGKT~~ 40 (436)
..-|.+.++.+ +..+..|.+ ++..+.||||||++
T Consensus 58 ~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 58 NATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp TCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred CCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEe
Confidence 34466666542 112223543 56799999999997
No 445
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=60.69 E-value=5.2 Score=32.60 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=15.9
Q ss_pred CCCcEEEECCCCchHHHHhH
Q 013778 23 FERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~ 42 (436)
.+..+++.+++|+|||..+-
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35667899999999997643
No 446
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=60.29 E-value=8.4 Score=35.58 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=22.8
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
.+++.+++|+|||.++.-.+... ... .+.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l-~~~--~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFL-REK--HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HHT--SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHh--cCCeEEEEe
Confidence 46678999999998765544433 221 145777775
No 447
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=60.26 E-value=5 Score=31.68 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.1
Q ss_pred cEEEECCCCchHHHH
Q 013778 26 DLCINSPTGSGKTLS 40 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~ 40 (436)
-.+|.+|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 567999999999974
No 448
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=60.25 E-value=4.5 Score=32.53 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=14.0
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
.+.|.+++|||||.++-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998643
No 449
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=60.17 E-value=43 Score=31.44 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=47.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHh-hccCCcEEEeCc
Q 013778 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE-LQSAVDILVATP 135 (436)
Q Consensus 57 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Iii~T~ 135 (436)
...++++.+..-+..+++.+.. .+..+..++|+.+...... +... .....+|+|+|+
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~------------------i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNI------------------MKTLAENGKGIIIVASY 405 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHH------------------HHHHHHHCCSCEEEEEH
T ss_pred CCeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHH------------------HHHHHhCCCCCEEEEEc
Confidence 3455555555555555544443 3558888999887544321 1111 134468999996
Q ss_pred hhHHHHhhcCCCcccCCccEEEEehhh
Q 013778 136 GRLMDHINATRGFTLEHLCYLVVDETD 162 (436)
Q Consensus 136 ~~l~~~l~~~~~~~~~~~~~iIiDE~h 162 (436)
+.+.. ++++.+.+++|+....
T Consensus 406 ~~~~~------GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 406 GVFST------GISVKNLHHVVLAHGV 426 (510)
T ss_dssp HHHHH------SCCCCSEEEEEESSCC
T ss_pred Chhhc------ccccccCcEEEEeCCC
Confidence 66632 4678889999987766
No 450
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=60.07 E-value=19 Score=36.11 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=53.5
Q ss_pred hcCCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc-----------
Q 013778 284 SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----------- 350 (436)
Q Consensus 284 ~~~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----------- 350 (436)
...+..++|.+++.+.|.+.++.+..+. ..++.++++.|+++..+|.... .++|+++|+ -+
T Consensus 121 aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~ 194 (844)
T 1tf5_A 121 ALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVL 194 (844)
T ss_dssp HTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhc
Confidence 3456789999999999999988877653 2458899999999876654432 278999995 22
Q ss_pred -ccccCCCCCCeEEE
Q 013778 351 -TRGMDVEGVNNVVN 364 (436)
Q Consensus 351 -~~Gidi~~~~~vi~ 364 (436)
...+++..++.+|+
T Consensus 195 ~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 195 YKEQMVQRPLHFAVI 209 (844)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred chhhhcccCCCEEEE
Confidence 12355667777665
No 451
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=60.06 E-value=15 Score=34.96 Aligned_cols=76 Identities=14% Similarity=0.281 Sum_probs=51.7
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc----ccc-c-CCCC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TRG-M-DVEG 358 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----~~G-i-di~~ 358 (436)
..++||.+|+++.+.++.+.++.... .+..+..++|+.+...+...+. +..+|+|+|. .+ ..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999999999988887632 2478889999886654432222 2368999993 22 222 2 4556
Q ss_pred CCeEEEec
Q 013778 359 VNNVVNYD 366 (436)
Q Consensus 359 ~~~vi~~~ 366 (436)
++.+|+-.
T Consensus 128 ~~~vViDE 135 (555)
T 3tbk_A 128 FTLMIFDE 135 (555)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 77777643
No 452
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=60.00 E-value=9.7 Score=26.51 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccc
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 325 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 325 (436)
++.+++++|.+-..+...+..|++.| +.+..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNG---VNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCC---CCEEEecccHH
Confidence 35689999999999999999999887 57778877764
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=59.45 E-value=4.6 Score=34.36 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=16.7
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|+|+|||..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 44578889999999999974
No 454
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=59.43 E-value=8.6 Score=33.41 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=21.7
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
-+++.+++|+|||.++...+.. +.. .+.+++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~-~~~---~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYF-YKK---KGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHH-HHH---TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH---CCCeEEEEe
Confidence 4667899999999865543332 222 344677764
No 455
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=59.42 E-value=5.8 Score=31.90 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=14.2
Q ss_pred cEEEECCCCchHHHHhHH
Q 013778 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
.+.+.+++|||||.++-.
T Consensus 14 iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466899999999986533
No 456
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=59.29 E-value=4.8 Score=33.46 Aligned_cols=20 Identities=30% Similarity=0.212 Sum_probs=16.5
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|.|+|||..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 33577888999999999974
No 457
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=59.28 E-value=9.8 Score=26.65 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccch
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 326 (436)
++.+++++|.+-..+...+..|++.| +.+..+.|++..
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~~ 92 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMHA 92 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCC---CCeEEeCCCHHH
Confidence 35689999999989999999999887 577788776643
No 458
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=59.24 E-value=32 Score=32.26 Aligned_cols=29 Identities=17% Similarity=-0.018 Sum_probs=22.4
Q ss_pred HHHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013778 12 AVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 12 ~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
.+++ .+.++.+|+...|.++.|+|||..+
T Consensus 164 raID-~l~PigrGQR~~I~g~~g~GKT~La 192 (515)
T 2r9v_A 164 KAID-SMIPIGRGQRELIIGDRQTGKTAIA 192 (515)
T ss_dssp HHHH-HHSCEETTCBEEEEEETTSSHHHHH
T ss_pred cccc-cccccccCCEEEEEcCCCCCccHHH
Confidence 4444 3445667999999999999999864
No 459
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=59.05 E-value=4.1 Score=37.19 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=15.5
Q ss_pred CCcEEE--ECCCCchHHHHhHH
Q 013778 24 ERDLCI--NSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~--~~~tGsGKT~~~~~ 43 (436)
...+++ .+|+|+|||..+-.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHH
Confidence 356778 89999999986443
No 460
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=58.90 E-value=4.4 Score=34.51 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=16.4
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|.|+|||..
T Consensus 29 i~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44577788999999999974
No 461
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.87 E-value=7.4 Score=42.53 Aligned_cols=46 Identities=20% Similarity=0.091 Sum_probs=34.0
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHH
Q 013778 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 72 (436)
++.-+.+.+|.|||||..++..+.+... .+..++|+.+-.++-...
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~----~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEECTTSCCCHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHh----cCCeEEEEecCCCCCHHH
Confidence 3466889999999999987665555443 445799999887776543
No 462
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.83 E-value=9.6 Score=33.05 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=22.2
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013778 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
++-+.+.+++|+|||..+...+.. + .. .+.+++++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~-~-~~--~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY-Y-KG--KGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH-H-HH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-H-HH--cCCeEEEec
Confidence 345667899999999765443332 2 21 344677764
No 463
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=58.80 E-value=5.1 Score=40.22 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=15.0
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||..+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999854
No 464
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=58.71 E-value=9.5 Score=27.08 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccch
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 326 (436)
.+.+++++|.+-..+...+..|++.| +.+..+.|++..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G---~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLG---LNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTT---CCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcC---CCEEEEcCcHHH
Confidence 45689999999999999999999887 578888887754
No 465
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=58.64 E-value=4.8 Score=34.56 Aligned_cols=20 Identities=20% Similarity=0.001 Sum_probs=16.5
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|+|+|||..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577788999999999974
No 466
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=58.62 E-value=62 Score=30.07 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=24.5
Q ss_pred HHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHH
Q 013778 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 12 ~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
.+++. +.++.+++..++.++.|+|||..+...+.
T Consensus 140 r~ID~-L~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 140 KVVDL-LAPYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HHHHH-HSCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred hHHHH-HhhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 34544 34566789999999999999976544433
No 467
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.60 E-value=4.5 Score=34.30 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=16.5
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|.|+|||..
T Consensus 38 i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 34577788999999999974
No 468
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=58.52 E-value=4.5 Score=34.46 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.4
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|.|+|||..
T Consensus 47 i~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHH
Confidence 34577788999999999974
No 469
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=58.50 E-value=5.8 Score=33.87 Aligned_cols=20 Identities=30% Similarity=0.224 Sum_probs=16.6
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|+|+|||..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577888999999999974
No 470
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=58.39 E-value=11 Score=26.65 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=29.4
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccc
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 325 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 325 (436)
++.+++++|.+-..+...+..|++.| +....+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G---~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcC---CCEEEecChHH
Confidence 35689999999889999999999887 66656666653
No 471
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=58.25 E-value=4.9 Score=40.29 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||+.+
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 57899999999999754
No 472
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=58.07 E-value=18 Score=36.26 Aligned_cols=58 Identities=9% Similarity=-0.054 Sum_probs=44.3
Q ss_pred cCCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC
Q 013778 285 LGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348 (436)
Q Consensus 285 ~~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 348 (436)
..+.+++|.+||.+.|.+.++.+..+. ..++.++.+.|+++..++.... .++|+|+|+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 346689999999999999888877653 2458899999999876544332 378999995
No 473
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=58.03 E-value=31 Score=31.84 Aligned_cols=69 Identities=19% Similarity=0.078 Sum_probs=45.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCc
Q 013778 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135 (436)
Q Consensus 56 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~ 135 (436)
+.+++|.+|++.-+.++++.+... +..+..++|+... ..... ......+|+|+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~~--------------------F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYPT--------------------IKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC-----------------------------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHhh--------------------hcCCCceEEEECC
Confidence 458999999999999888888765 7888888884211 11111 1123469999993
Q ss_pred hhHHHHhhcCCCcccCCccEEE
Q 013778 136 GRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 136 ~~l~~~l~~~~~~~~~~~~~iI 157 (436)
.+. .++++. +++||
T Consensus 232 -----v~e--~GiDip-v~~VI 245 (440)
T 1yks_A 232 -----IAE--MGANLC-VERVL 245 (440)
T ss_dssp -----STT--CCTTCC-CSEEE
T ss_pred -----hhh--eeeccC-ceEEE
Confidence 223 345677 77776
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=58.02 E-value=4.7 Score=34.43 Aligned_cols=21 Identities=29% Similarity=0.116 Sum_probs=17.0
Q ss_pred CCCCCCcEEEECCCCchHHHH
Q 013778 20 PGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 20 ~~~~~~~~i~~~~tGsGKT~~ 40 (436)
.+..|+-+.+.+|.|+|||..
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHH
Confidence 344577888999999999974
No 475
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=57.80 E-value=5.2 Score=33.93 Aligned_cols=20 Identities=30% Similarity=0.169 Sum_probs=16.5
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|+|+|||..
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EeCCCEEEEECCCCCCHHHH
Confidence 34577888999999999974
No 476
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=62.38 E-value=2.2 Score=33.57 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=47.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013778 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
.+.++||.++++..+..+++.+... |+.+..++|+.+......... .......+|+|+|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~-----------------~f~~g~~~vLvaT 87 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIK-----------------RLTEGRVNVLVAT 87 (170)
Confidence 3457999999999888888777664 677778888765433211100 0112245799999
Q ss_pred chhHHHHhhcCCCcccCCccEEEE
Q 013778 135 PGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
. . +. .++++.+.++||.
T Consensus 88 ~-~----~~--~Gid~~~~~~Vi~ 104 (170)
T 2yjt_D 88 D-V----AA--RGIDIPDVSHVFN 104 (170)
Confidence 2 2 22 2455667777664
No 477
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=57.59 E-value=5.3 Score=33.45 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.4
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|.|+|||..
T Consensus 29 i~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 33577788999999999974
No 478
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=57.57 E-value=6.7 Score=32.55 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=15.8
Q ss_pred CCCcEEEECCCCchHHHHhH
Q 013778 23 FERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~ 42 (436)
.+.-+++.++.|+|||..+-
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 45567899999999998643
No 479
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=57.36 E-value=4.7 Score=33.39 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=16.2
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|.|+|||..
T Consensus 27 i~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp EETTCEEEEEECTTSCHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577788999999999963
No 480
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=57.34 E-value=8.7 Score=34.02 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.++|.+|.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67889999999999753
No 481
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=57.33 E-value=17 Score=36.66 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=49.1
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc----ccc-c-CCCC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TRG-M-DVEG 358 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----~~G-i-di~~ 358 (436)
.+++||.+|++..+.++.+.++.... .+..+..++|+.+...+...+. +..+|+|+|. .+ ..+ + ++..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999999999888887632 2588999999886654322221 2578999993 22 222 3 4556
Q ss_pred CCeEEEec
Q 013778 359 VNNVVNYD 366 (436)
Q Consensus 359 ~~~vi~~~ 366 (436)
++.+|+-.
T Consensus 372 ~~~iViDE 379 (797)
T 4a2q_A 372 FTLMIFDE 379 (797)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 77777643
No 482
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=57.26 E-value=5.3 Score=34.11 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.4
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|+|+|||..
T Consensus 34 i~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp EETTCEEEEECCTTSCHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34577788999999999974
No 483
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=57.17 E-value=11 Score=35.20 Aligned_cols=29 Identities=17% Similarity=-0.019 Sum_probs=22.6
Q ss_pred HHHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013778 12 AVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 12 ~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
.+++ .+.++.+|+...|.++.|+|||..+
T Consensus 151 raID-~l~PigrGQR~~Ifg~~g~GKT~La 179 (502)
T 2qe7_A 151 KAID-SMIPIGRGQRELIIGDRQTGKTTIA 179 (502)
T ss_dssp HHHH-HSSCCBTTCBCEEEECSSSCHHHHH
T ss_pred eecc-cccccccCCEEEEECCCCCCchHHH
Confidence 3444 3456778999999999999999863
No 484
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=57.12 E-value=14 Score=36.53 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=60.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----CcccccC-CCCC
Q 013778 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRGMD-VEGV 359 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~~Gid-i~~~ 359 (436)
.++++++.+|++..+.+.++.++.+...+..+...+|+....++ ..+..+|+|+|. .+..+.. +.++
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 36799999999999999999997655556788889988766442 124689999994 2233322 5667
Q ss_pred CeEEEecCCC-----ChhHHHHHhhhccc
Q 013778 360 NNVVNYDKPA-----YIKTYIHRAGRTAR 383 (436)
Q Consensus 360 ~~vi~~~~~~-----s~~~~~Q~~GR~~R 383 (436)
++||+-.... -...+...++|..+
T Consensus 140 ~~vIiDE~H~l~~~~r~~~~~~ll~~l~~ 168 (702)
T 2p6r_A 140 SCLVVDEIHLLDSEKRGATLEILVTKMRR 168 (702)
T ss_dssp CEEEETTGGGGGCTTTHHHHHHHHHHHHH
T ss_pred CEEEEeeeeecCCCCcccHHHHHHHHHHh
Confidence 7777644321 23334445555544
No 485
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=57.10 E-value=6.2 Score=34.18 Aligned_cols=17 Identities=29% Similarity=0.555 Sum_probs=13.7
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
-+.|.+++|+|||..+-
T Consensus 33 ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35689999999997643
No 486
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=57.00 E-value=6.3 Score=32.22 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=13.6
Q ss_pred cEEEECCCCchHHHHh
Q 013778 26 DLCINSPTGSGKTLSY 41 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~ 41 (436)
.+.+.++.|||||.++
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999854
No 487
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=56.98 E-value=4.4 Score=34.04 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.5
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|+|+|||..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577788999999999974
No 488
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=56.95 E-value=13 Score=35.27 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=49.1
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc----ccc-c-CCCC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TRG-M-DVEG 358 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----~~G-i-di~~ 358 (436)
..++||.+|+++.+.++.+.++.... .+..+..++|+.+...+...+. ...+|+|+|. .+ ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999999999998887532 2478888999886554322221 1368999993 22 233 3 5667
Q ss_pred CCeEEEec
Q 013778 359 VNNVVNYD 366 (436)
Q Consensus 359 ~~~vi~~~ 366 (436)
++.+|+-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 78777643
No 489
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=56.78 E-value=6 Score=33.33 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=16.6
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.+.+|+|+|||..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577889999999999974
No 490
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=56.62 E-value=5.8 Score=32.04 Aligned_cols=17 Identities=35% Similarity=0.210 Sum_probs=13.9
Q ss_pred CcEEEECCCCchHHHHh
Q 013778 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
.-+.+.+++|+|||..+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44778999999999754
No 491
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=56.60 E-value=6.2 Score=34.21 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.6
Q ss_pred cEEEECCCCchHHHHh
Q 013778 26 DLCINSPTGSGKTLSY 41 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~ 41 (436)
-+++.+++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999864
No 492
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=56.17 E-value=6.7 Score=33.05 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=13.9
Q ss_pred cEEEECCCCchHHHHhH
Q 013778 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
.+.|.+++|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998653
No 493
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=56.12 E-value=5.6 Score=34.05 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.4
Q ss_pred CCCCCcEEEECCCCchHHHH
Q 013778 21 GLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~ 40 (436)
+..|+-+.|.+|.|+|||..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34577788999999999964
No 494
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=56.12 E-value=16 Score=32.43 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=20.7
Q ss_pred HHHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013778 12 AVWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 12 ~a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
.+++.+...+..+.-+.+.+|+|+|||..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTL 71 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTT 71 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHH
Confidence 34455544454567788999999999974
No 495
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=56.09 E-value=25 Score=35.53 Aligned_cols=75 Identities=8% Similarity=0.070 Sum_probs=53.2
Q ss_pred hcCCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCC-c-----c-----
Q 013778 284 SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T----- 351 (436)
Q Consensus 284 ~~~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~-----~----- 351 (436)
...+.+++|.+++.+.|.+.++.+..+. ..++.++++.|+++..+|.... .++|+++|+- + .
T Consensus 149 aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~ 222 (922)
T 1nkt_A 149 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAH 222 (922)
T ss_dssp HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhc
Confidence 3456789999999999998888877653 2458899999999876654433 2789999952 2 1
Q ss_pred --cccCCCCCCeEEE
Q 013778 352 --RGMDVEGVNNVVN 364 (436)
Q Consensus 352 --~Gidi~~~~~vi~ 364 (436)
..+....++.+|+
T Consensus 223 ~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 223 SLDDLVQRGHHYAIV 237 (922)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred cHhhhccCCCCEEEE
Confidence 1355566776664
No 496
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=56.08 E-value=16 Score=30.31 Aligned_cols=122 Identities=9% Similarity=0.078 Sum_probs=66.6
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Cc----cc---ccCCC
Q 013778 287 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TR---GMDVE 357 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----~~---Gidi~ 357 (436)
+.++||.+|+++.+.++++.+++... .+..+..++++..... .......+..+|+|+|. .+ .. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 45799999999999999999987632 2355666655432211 11122345679999993 11 12 46777
Q ss_pred CCCeEEEecCCC----ChhHHHHHhhhccc-CCCCceEEEEecchhHHHHHHHHHHhcC
Q 013778 358 GVNNVVNYDKPA----YIKTYIHRAGRTAR-AGQLGRCFTLLHKDEVKRFKKLLQKADN 411 (436)
Q Consensus 358 ~~~~vi~~~~~~----s~~~~~Q~~GR~~R-~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (436)
+++.+|+-.... +...+...+-+..+ ....+.-+++++..-...+.++.+...+
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~ 233 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLD 233 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSS
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCC
Confidence 888777644321 00112222222211 1122334455565544556666665543
No 497
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=56.02 E-value=5.8 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=16.0
Q ss_pred CCCCcEEEECCCCchHHHH
Q 013778 22 LFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 22 ~~~~~~i~~~~tGsGKT~~ 40 (436)
..|+-+.+.+|.|+|||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577788999999999974
No 498
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=55.86 E-value=6.4 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=17.2
Q ss_pred CCCcEEEECCCCchHHHHhHH
Q 013778 23 FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~ 43 (436)
.+..+++.||||+|||.++-.
T Consensus 922 ~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 922 TQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HCSEEEEECSTTSSHHHHHHH
T ss_pred hcceEEEECCCCCCHHHHHHH
Confidence 467799999999999986443
No 499
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=55.84 E-value=14 Score=32.94 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.1
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013778 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
..+.+.+++|+|||..+.-
T Consensus 80 ~~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999986433
No 500
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=55.80 E-value=7.6 Score=34.30 Aligned_cols=29 Identities=10% Similarity=-0.071 Sum_probs=20.2
Q ss_pred hhHHHHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013778 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
.+.+.+...+. .++.++|.+|.|+|||..
T Consensus 19 ~el~~L~~~l~---~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 19 EESRKLEESLE---NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HHHHHHHHHHH---HCSEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHh---cCCeEEEECCCcCCHHHH
Confidence 34444444443 247789999999999975
Done!