BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013780
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 31/426 (7%)
Query: 1 MEK--SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
MEK + D I+RS P + +P+ S+ ++F+N + +++K LI+ + ++S
Sbjct: 35 MEKQSNNNNSDVIFRSKLPDIYIPN--HLSLHDYIFQNISEFATKPCLINGPTGHVYTYS 92
Query: 59 QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
I +++ +F LG+ + DVV++ PN F + FL GA A+ ANP +T +E+
Sbjct: 93 DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152
Query: 119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL 177
+KQ K SN KL+IT DK+K L N V++ D F +L +
Sbjct: 153 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTELTQS 209
Query: 178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--- 233
+ +++ D V + D AL YSSGTTG+ KGV+LTHK L+ S Q++ GE
Sbjct: 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPN 264
Query: 234 ----LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
D V+LCVLPMFH++ L+ I+ L+ G ++ M KF+I + L I++ +VTV +
Sbjct: 265 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPM 324
Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
VPPI+LA+AK+S K+D+SS+++V SGAAPLGKEL + P A + Q GYGMTE
Sbjct: 325 VPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ-GYGMTEAG 383
Query: 350 APISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 404
+++ + P +SG+ GT+V E +IV DT L NQ GEI +RG +
Sbjct: 384 PVLAMSLGFAKEPF--PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK 441
Query: 405 GIVYIN 410
G Y+N
Sbjct: 442 G--YLN 445
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 217 bits (553), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 219/408 (53%), Gaps = 25/408 (6%)
Query: 11 IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
I+RS P + +P + + ++ N +++SSK LI+ + + +++ + +V+
Sbjct: 8 IFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASG 65
Query: 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
+GI + DV+++F P+S F + FLG GAI + ANP T +EL+K K S KL+
Sbjct: 66 LNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLL 125
Query: 131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
IT ++KVKD + F +L + + P V +
Sbjct: 126 ITQACYYEKVKDF-------ARESDVKVMCVDSAPDGCLHFSELTQ--ADENEAPQVDIS 176
Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVF 248
D AL YSSGTTG+ KGV+LTHK I A + + L + V+LCVLPMFH++
Sbjct: 177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIY 236
Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
L+ I+ L+ G ++ M KF+I L IEKY+V++ VVPP+++++AK+ + K D+
Sbjct: 237 ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDL 296
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET------CAPISLENPLVGVR 362
SSL+++ SG APLGKEL + + P A + Q GYGMTE C + E +
Sbjct: 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ-GYGMTEAGPVLAMCLAFAKEPFDI--- 352
Query: 363 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
+ G+ GT+V E +IV +T LP NQ GEI +RG + G Y+N
Sbjct: 353 KPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG--YLN 398
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 196/411 (47%), Gaps = 35/411 (8%)
Query: 17 PPLV-LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLG 75
PP L + +H + A +A DA ++ ++++S++ + +++ + + G
Sbjct: 46 PPFYPLEDGTAGEQLHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYG 105
Query: 76 ITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
+ + + + + NS+ F P+C G + IG + N +Y EL + S P +V
Sbjct: 106 LGLQHHIAVCSENSLQFFMPVC--GALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCS 163
Query: 134 PELWDKVKDLN--LPA----VLLGSKDXXXXXXXXXXXXXXXXFHDLIE--LSGSVTD-- 183
K+ + LP V+L S++ + IE L +
Sbjct: 164 KRALQKILGVQKKLPIIQKIVILDSREDYMGKQS---------MYSFIESHLPAGFNEYD 214
Query: 184 -IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVL 239
IPD ++T A ++ SSG+TG+ KGV LTHKN + G D +L
Sbjct: 215 YIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVR--FSHCRDPVFGNQIIPDTAIL 272
Query: 240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
V+P H FG+ L L G +V M +F+ E+ LR+++ Y++ +VP + AK
Sbjct: 273 TVIPFHHGFGMFTTL-GYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK 331
Query: 300 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLV 359
++LV K+D+S+L + SG APL KE+ E K I Q GYG+TET + I + P
Sbjct: 332 STLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQ-GYGLTETTSAIII-TPRG 389
Query: 360 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
+ G+ G +V A+IV +DT K L NQ GE+ V+GP + G Y+N
Sbjct: 390 RDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKG--YVN 438
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 192/394 (48%), Gaps = 25/394 (6%)
Query: 28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
+H + A +A DA + +++++++ + ++++ + + G+ +++ +
Sbjct: 29 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 88
Query: 88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
NS+ F + LG + IG + AN +Y EL + S P +V + K+ ++ L
Sbjct: 89 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
P + ++ SK E +P+ + A ++ SS
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 204
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
G+TG+ KGV L H+ A A + G D +L V+P H FG+ L L
Sbjct: 205 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 261
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
G VV M +F+ E+ LR+++ Y++ +VP + AK++L+ K+D+S+L + SG
Sbjct: 262 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 321
Query: 319 APLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 376
APL KE+ E K ++PG + GYG+TET + I L P G + G+ G +V EA
Sbjct: 322 APLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI-LITP-EGDDKPGAVGKVVPFFEA 376
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
++V +DT K L NQ GE+ VRGP + G Y+N
Sbjct: 377 KVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 408
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 192/394 (48%), Gaps = 25/394 (6%)
Query: 28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
+H + A +A DA + +++++++ + ++++ + + G+ +++ +
Sbjct: 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
NS+ F + LG + IG + AN +Y EL + S P +V + K+ ++ L
Sbjct: 84 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
P + ++ SK E +P+ + A ++ SS
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 199
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
G+TG+ KGV L H+ A A + G D +L V+P H FG+ L L
Sbjct: 200 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 256
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
G VV M +F+ E+ LR+++ Y++ +VP + AK++L+ K+D+S+L + SG
Sbjct: 257 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
Query: 319 APLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 376
APL KE+ E K ++PG + GYG+TET + I L P G + G+ G +V EA
Sbjct: 317 APLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI-LITP-EGDDKPGAVGKVVPFFEA 371
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
++V +DT K L NQ GE+ VRGP + G Y+N
Sbjct: 372 KVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 403
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 192/394 (48%), Gaps = 25/394 (6%)
Query: 28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
+H + A +A DA + +++++++ + ++++ + + G+ +++ +
Sbjct: 29 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSE 88
Query: 88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
NS+ F + LG + IG + AN Y EL + S P +V + K+ ++ L
Sbjct: 89 NSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
P + ++ SK E +P+ + A ++ SS
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 204
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
G+TG+ KGV L H+ A A + G D +L V+P H FG+ L L
Sbjct: 205 GSTGLPKGVALPHRAL--AVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTL-GYL 261
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
G VV M +F+ E+ LR+++ Y++ +VP + LAK++L+ K+D+S+L + SG
Sbjct: 262 ISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGG 321
Query: 319 APLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 376
APL KE+ E K ++PG + GYG+TET + I L P G + G+ G +V EA
Sbjct: 322 APLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI-LITP-KGDDKPGAVGKVVPFFEA 376
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
++V +DT K L NQ GE+ VRGP + G Y+N
Sbjct: 377 KVVDLDTGKTLGVNQRGELSVRGPMIMSG--YVN 408
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 192/394 (48%), Gaps = 25/394 (6%)
Query: 28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
+H + A +A DA + +++++++ + ++++ + + G+ +++ +
Sbjct: 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
NS+ F + LG + IG + AN +Y EL + S P +V + K+ ++ L
Sbjct: 84 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
P + ++ SK E +P+ + A ++ SS
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 199
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
G+TG+ KGV L H+ A A + G D +L V+P H FG+ L L
Sbjct: 200 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 256
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
G VV M +F+ E+ LR+++ Y++ +VP + AK++L+ K+D+S+L + SG
Sbjct: 257 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
Query: 319 APLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 376
APL KE+ E K ++PG + GYG+TET + I L P G + G+ G +V EA
Sbjct: 317 APLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI-LITP-EGDDKPGAVGKVVPFFEA 371
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
++V +DT K L NQ GE+ VRGP + G Y+N
Sbjct: 372 KVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 403
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 19/375 (5%)
Query: 44 LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
+A +A + S++++ + + ++ G+ + + + N F I + + IG
Sbjct: 42 IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
+ N +YT+ EL + S P +V + + DKV + + +
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----F 217
F G + V V + + AL+ SSG+TG+ KGV LTH+N F
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 218 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
A I +Q G VL V+P H FG+ L L G VV + KFD E L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
++ Y+ T +VP + L K+ L+ K+D+S+L + SG APL KE+ E + N+PG
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337
Query: 336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 395
+ GYG+TET + I + G + G++G +V +A+++ +DT K L PN+ GE+
Sbjct: 338 V---RQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 396 WVRGPNVTPGIVYIN 410
V+GP + G Y+N
Sbjct: 393 CVKGPMLMKG--YVN 405
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 19/375 (5%)
Query: 44 LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
+A +A + S++++ + + ++ G+ + + + N F I + + IG
Sbjct: 42 IAFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
+ N +YT+ EL + S P +V + + DKV + + +
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----F 217
F G + V V + + AL+ SSG+TG+ KGV LTH+N F
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 218 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
A I +Q G VL V+P H FG+ L L G VV + KFD E L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
++ Y+ T +VP + L K+ L+ K+D+S+L + SG APL KE+ E + N+PG
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337
Query: 336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 395
+ GYG+TET + I + G + G++G +V +A+++ +DT K L PN+ GE+
Sbjct: 338 V---RQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 396 WVRGPNVTPGIVYIN 410
V+GP + G Y+N
Sbjct: 393 CVKGPMLMKG--YVN 405
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 19/375 (5%)
Query: 44 LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
+A +A + S++++ + + ++ G+ + + + N F I + + IG
Sbjct: 42 IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
+ N +YT+ EL + S P +V + + DKV + + +
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----F 217
F G + V V + + AL+ SSG+TG+ KGV LTH+N F
Sbjct: 162 GYQCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 218 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
A I +Q G VL V+P H FG+ L L G VV + KFD E L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
++ Y+ T +VP + L K+ L+ K+D+S+L + SG APL KE+ E + N+PG
Sbjct: 278 TLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337
Query: 336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 395
+ GYG+TET + I + G + G++G +V +A+++ +DT K L PN+ GE+
Sbjct: 338 V---RQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 396 WVRGPNVTPGIVYIN 410
V+GP + G Y+N
Sbjct: 393 CVKGPMLMKG--YVN 405
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 159/373 (42%), Gaps = 40/373 (10%)
Query: 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
KLA+ A D+ +S+++ + +V++ G+ D V S+ + +L +
Sbjct: 18 KLAIETAAGDK-ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRA 76
Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXX 162
G + N YT+ EL + D+ PK+V+ P D + + A +G+
Sbjct: 77 GGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI---AAKVGATVETLGP--- 130
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
+ GS+TD + D AA+LY+SGTTG SKG L+H
Sbjct: 131 -------------DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
N + SL + + D V++ LP++H GL V L + + KFD +
Sbjct: 178 DNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDK 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
L R TV VP L ++ + K +L SG+APL + D +
Sbjct: 236 ILDLXA--RATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPL----LADTHREWS 289
Query: 335 GATIFQV--GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 392
T V YG TET S NP G R G+ G + GV A++ +T K LP +
Sbjct: 290 AKTGHAVLERYGXTETNXNTS--NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI 347
Query: 393 GEIWVRGPNVTPG 405
G I V+GPNV G
Sbjct: 348 GXIEVKGPNVFKG 360
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 173/400 (43%), Gaps = 39/400 (9%)
Query: 25 PSFSMVHFLFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITK 78
P S+ + + + K A+I A+ ES +F + + K++ G+ K
Sbjct: 17 PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRK 76
Query: 79 KDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD 138
+ V + PNSI + + + A NP Y EL + DS ++ L++
Sbjct: 77 GEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE 136
Query: 139 KVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL--SGSVTDIPDVSVK-QTDAA 195
N VL + L E+ SGS D +V V + D A
Sbjct: 137 -----NFKPVL-------EKTGVERVFVVGGEVNSLSEVXDSGS-EDFENVKVNPEEDVA 183
Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV--FGLSVI 253
+ Y+ GTTG KGV LTH N A +L ++ L D +V C P FH FGL +
Sbjct: 184 LIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGL-SHXDTIVGCX-PXFHSAEFGLVNL 241
Query: 254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
+ GN V G F+ E IEKY+ T W VPP + L S + +D S L
Sbjct: 242 ---XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYL 298
Query: 312 KLVGSGAAPLGKELMEDCQK------NIPGATIFQVGYGMTETCAPISLENPLVGVRRSG 365
K+ +GA P+ L+E K N P Q+ +G TE C P NP + + +S
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQI-WGXTEAC-PXVTTNPPLRLDKST 356
Query: 366 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
+ G + +E +++S++ + L + GEI +RGPN+ G
Sbjct: 357 TQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG 396
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 155/348 (44%), Gaps = 34/348 (9%)
Query: 30 VHFLFRNSASYSSKL-ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
+ ++ R A+ S +L A ++ +D ++++Q ++ + + LGI K D V + PN
Sbjct: 18 IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 77
Query: 89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
S+ F F G +GA+A N E+S + DS K+VI
Sbjct: 78 SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----------------- 120
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLI-------ELSGSVTDIPDVSVKQTDAAALLYSS 201
G+ D I L + D P V D ++Y+S
Sbjct: 121 -YGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTS 179
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
GTTG KGV+ TH++ +A+ ++ ++ +L LPMFHV L+ +++ + +G
Sbjct: 180 GTTGHPKGVVHTHESVHSAASSWASTIDV--RYRDRLLLPLPMFHVAALTTVIFSAM-RG 236
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
++SM +FD I + RV + VP I+ + + + D + +G AP+
Sbjct: 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM 296
Query: 322 GKELME-DCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG 368
+ L++ KNI + Q GY +TE+C +L +R++GSAG
Sbjct: 297 PEALIKIYAAKNI---EVVQ-GYALTESCGGGTLLLSEDALRKAGSAG 340
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 155/348 (44%), Gaps = 34/348 (9%)
Query: 30 VHFLFRNSASYSSKL-ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
+ ++ R A+ S +L A ++ +D ++++Q ++ + + LGI K D V + PN
Sbjct: 4 IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 63
Query: 89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
S+ F F G +GA+A N E+S + DS K+VI
Sbjct: 64 SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----------------- 106
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLI-------ELSGSVTDIPDVSVKQTDAAALLYSS 201
G+ D I L + D P V D ++Y+S
Sbjct: 107 -YGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTS 165
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
GTTG KGV+ TH++ +A+ ++ ++ +L LPMFHV L+ +++ + +G
Sbjct: 166 GTTGHPKGVVHTHESVHSAASSWASTIDV--RYRDRLLLPLPMFHVAALTTVIFSAM-RG 222
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
++SM +FD I + RV + VP I+ + + + D + +G AP+
Sbjct: 223 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM 282
Query: 322 GKELME-DCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG 368
+ L++ KNI + Q GY +TE+C +L +R++GSAG
Sbjct: 283 PEALIKIYAAKNI---EVVQ-GYALTESCGGGTLLLSEDALRKAGSAG 326
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 153/373 (41%), Gaps = 47/373 (12%)
Query: 47 IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
I+ + + +S+++ + +V++ G+ D V S+ + +L + G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
N YT+ EL + D+ P +V+ P D + + LG
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
GS+TD + D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
N + SL + + D V++ LP++H GL V L ++ + FD +
Sbjct: 178 DNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
L + R TV VP L ++ + ++L SG+AP L+ D +
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAP----LLADTHREWS 289
Query: 335 GATIFQV--GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 392
T V YGMTET ++ NP G R G+ G + GV A++ +T LP +
Sbjct: 290 AXTGHAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDI 347
Query: 393 GEIWVRGPNVTPG 405
G I V GPNV G
Sbjct: 348 GMIEVXGPNVFXG 360
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 153/373 (41%), Gaps = 47/373 (12%)
Query: 47 IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
I+ + + +S+++ + +V++ G+ D V S+ + +L + G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
N YT+ EL + D+ P +V+ P D + + LG
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
GS+TD + D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
N + SL + + D V++ LP++H GL V L ++ + FD +
Sbjct: 178 DNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
L + R TV VP L ++ + ++L SG+AP L+ D +
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAP----LLADTHREWS 289
Query: 335 GATIFQV--GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 392
T V YGMTET ++ NP G R G+ G + GV A++ +T LP +
Sbjct: 290 AXTGHAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDI 347
Query: 393 GEIWVRGPNVTPG 405
G I V GPNV G
Sbjct: 348 GMIEVXGPNVFXG 360
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 153/373 (41%), Gaps = 47/373 (12%)
Query: 47 IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
I+ + + +S+++ + +V++ G+ D V S+ + +L + G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
N YT+ EL + D+ P +V+ P D + + LG
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
GS+TD + D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
N + SL + + D V++ LP++H GL V L ++ + FD +
Sbjct: 178 DNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
L + R TV VP L ++ + ++L SG+AP L+ D +
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAP----LLADTHREWS 289
Query: 335 GATIFQV--GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 392
T V YGMTET ++ NP G R G+ G + GV A++ +T LP +
Sbjct: 290 AXTGHAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDI 347
Query: 393 GEIWVRGPNVTPG 405
G I V GPNV G
Sbjct: 348 GMIEVXGPNVFXG 360
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 180/391 (46%), Gaps = 36/391 (9%)
Query: 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA 86
S+ +L++ + +A+ D ES ++ +++ + S + L ++ V ++
Sbjct: 1 MSLDFWLYKQAQQNGHHIAITDGQ--ESYTY---QNLYCEASLLAKRLKAYQQSRVGLYI 55
Query: 87 PNSIHFPI----CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI-TVPELWDKVK 141
NSI I C+L I I I + P +E++ Q++ + +L+ T+P +
Sbjct: 56 DNSIQSIILIHACWLANIEIAMINTRLTP----NEMTNQMRSIDVQLIFCTLPLELRGFQ 111
Query: 142 DLNLPAVLLGSKDXXXXXXXXXXX-XXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYS 200
++L + +D ++ + S ++I + S D A+++++
Sbjct: 112 IVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFT 171
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260
SGTTG K V T +N A++ I + L + D L VLP++H+ GLSV+L ++
Sbjct: 172 SGTTGPQKAVPQTFRNHYASA--IGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIE- 228
Query: 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP 320
G V + KF+ E L I+ R+T +VP + L + L +++ + L G A
Sbjct: 229 GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILL---GGAK 285
Query: 321 LGKELMEDC-QKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 379
L ++E Q N+P I+ +GMTETC+ P + R + G A V+ +I
Sbjct: 286 LSATMIETALQYNLP---IYN-SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIK 341
Query: 380 SVDTLKPLPPNQ--LGEIWVRGPNVTPGIVY 408
+ PN+ GE+ ++G NV G +Y
Sbjct: 342 N--------PNKEGHGELMIKGANVMNGYLY 364
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 132/302 (43%), Gaps = 46/302 (15%)
Query: 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXX 169
NP EL+ + DS P LV+ P D LP L G+ +
Sbjct: 99 NPKSGDKELAHILSDSAPSLVLAPP-------DAELPPAL-GALERVDVD---------- 140
Query: 170 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 229
+ G+V P+ D A ++Y+SGTTG KG ++ + ++ +
Sbjct: 141 -----VRARGAV---PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 230 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
GE V++ LP+FHV GL + + L++G V +G+F E A R + T+ +
Sbjct: 193 WTGE--DVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFG 249
Query: 290 VPPIILALAKN-----SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV--G 342
VP + +A+ L + + L + GS A P+ + I AT +V
Sbjct: 250 VPTMYHRIAETLPADPELAKALAGARLLVSGSAALPV------HDHERIAAATGRRVIER 303
Query: 343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD--TLKPLPPNQLGEIWVRGP 400
YGMTET S+ G R+G+ G + GVE ++V D + L +GEI VRGP
Sbjct: 304 YGMTETLMNTSVR--ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGP 361
Query: 401 NV 402
N+
Sbjct: 362 NL 363
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 97/382 (25%), Positives = 165/382 (43%), Gaps = 28/382 (7%)
Query: 32 FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
L +A Y ++A+ ++ S+ + + +++ F+ LGI +KD V++ PN
Sbjct: 30 LLRDRAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE 87
Query: 92 FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
F + +GA+ A P + SE++ + + I +P D + ++
Sbjct: 88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQ 143
Query: 152 SKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
+ F L +L +P+V K +D A L S G+TG+SK +
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIP 201
Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCV 264
TH ++I SL S V LDH V L LPM H + LS +LY G V
Sbjct: 202 RTHDDYIY-SLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY----AGGRV 253
Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
V + A IE+ +VT+ +VPP+ + + R+ D+SSL+++ G A E
Sbjct: 254 VLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAE 313
Query: 325 LMEDCQKNIPGATIFQVGYGMTETCAPIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDT 383
K + G T+ QV +GM E + L++P + + G ++ + V D
Sbjct: 314 AARRV-KAVFGCTLQQV-FGMAEGLVNYTRLDDPEEII--VNTQGKPMSPYDESRVWDDH 369
Query: 384 LKPLPPNQLGEIWVRGPNVTPG 405
+ + P + G + RGP G
Sbjct: 370 DRDVKPGETGHLLTRGPYTIRG 391
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 175/408 (42%), Gaps = 34/408 (8%)
Query: 27 FSMVHFLFRNSASYSSKLA-LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85
F++ RN+A + + A ++D L+ + + +++ G+ D V I
Sbjct: 6 FTLADVYRRNAALFPDRTAFMVDG---VRLTHRDYLARAERLASGLLRDGVHTGDRVAIL 62
Query: 86 APNSIHFPICFLGVIA-IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
+ N I +G +A IGAI N E++ + D P +V+ + D V +
Sbjct: 63 SQNCSEM-IELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV- 120
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
LP+ L G K F DL S T D +++++
Sbjct: 121 LPS-LGGVK---KAYAIGDGSGPFAPFKDL----ASDTPFSAPEFGAADGFVIIHTAAVG 172
Query: 205 GVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
G +G +++ N IA S ++ A + + E D V L +LP+FHV GL ++L Q Q G
Sbjct: 173 GRPRGALISQGNLLIAQSSLVDAWR--LTEAD-VNLGMLPLFHVTGLGLMLTLQ-QAGGA 228
Query: 264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323
V KFD A R IE ++VTV P++ + + + ++SL+ V P
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ--LASLRAVTGLDTP--- 283
Query: 324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT 383
E +E + P AT F +G +ET +S P R SAG + +V +
Sbjct: 284 ETIERFEATCPNAT-FWATFGQSETSG-LSTFAPYR--DRPKSAGRPLFWRTVAVVDAED 339
Query: 384 LKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT--LFLWGCEHTDSFIR 429
+PLPP ++GEI +RGP V G Y N T F G HT R
Sbjct: 340 -RPLPPGEVGEIVLRGPTVFKG--YWNNAAATQHAFRNGWHHTGDMGR 384
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 171/402 (42%), Gaps = 18/402 (4%)
Query: 13 RSLRPPLVLPSDPS--FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
++ PP P F+ +LFR + + + K A ID S ++ + + + + +
Sbjct: 7 KAANPPAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTG--STTYGELEERARRFASA 64
Query: 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
R LG+ ++ +L+ +++ P+ FLG + G + AN + T ++ + S+ + V
Sbjct: 65 LRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV 124
Query: 131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
I L V A G + F +LI+ +
Sbjct: 125 IASGALVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCD 183
Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
D A LYSSG+TG KG + TH N + + + + E D VV +F +GL
Sbjct: 184 --DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND-VVFSAAKLFFAYGL 240
Query: 251 SVILYDQLQKGNCVVSMGKFDIEMALRA-IEKYRVTVWWVVPPIIL-ALAKNSLVRKFDI 308
L L G + M + A+ A + ++R TV++ VP + L +L + D+
Sbjct: 241 GNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADV 300
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG 368
++++ S L +E+ E + G I G G TE I L N G G+ G
Sbjct: 301 -AIRICTSAGEALPREIGERFTAHF-GCEILD-GIGSTEMLH-IFLSN-RAGAVEYGTTG 355
Query: 369 TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
V G E ++ + +P ++G+++++GP+ ++Y N
Sbjct: 356 RPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSA--AVMYWN 394
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 161/382 (42%), Gaps = 28/382 (7%)
Query: 32 FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
L +A Y ++A+ ++ S+ + + +++ F+ LGI +KD V++ PN
Sbjct: 30 LLRDRAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE 87
Query: 92 FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
F + +GA+ A P + SE++ + + I +P D + ++
Sbjct: 88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQ 143
Query: 152 SKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
+ F L +L +P+V K +D A L S G+TG+SK +
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIP 201
Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCV 264
TH ++I SL S V LDH V L LP H + LS +LY G V
Sbjct: 202 RTHDDYI-YSLKRSVE---VCWLDHSTVYLAALPXAHNYPLSSPGVLGVLY----AGGRV 253
Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
V + A IE+ +VT+ +VPP+ + R+ D+SSL+++ G A E
Sbjct: 254 VLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAE 313
Query: 325 LMEDCQKNIPGATIFQVGYGMTETCAPIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDT 383
K + G T+ QV +G E + L++P + + G + + V D
Sbjct: 314 AARRV-KAVFGCTLQQV-FGXAEGLVNYTRLDDPEEII--VNTQGKPXSPYDESRVWDDH 369
Query: 384 LKPLPPNQLGEIWVRGPNVTPG 405
+ + P + G + RGP G
Sbjct: 370 DRDVKPGETGHLLTRGPYTIRG 391
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 164/397 (41%), Gaps = 30/397 (7%)
Query: 24 DPSFSMVHFLFRNSASYSSKLALIDADSDE--SLSFSQFKSIVIKVSHSFRHLGITKKDV 81
D ++ FL R +A + K + + E ++++ ++ R LG+ D
Sbjct: 15 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDR 74
Query: 82 VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141
V N + V +GA+ TANP + E++ + + K+++ P L V+
Sbjct: 75 VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134
Query: 142 DLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
+ + + E G D V V + A + Y++
Sbjct: 135 AIR-------GELKTVQHFVVMDEKAPEGYLAYEEALGEEAD--PVRVPERAACGMAYTT 185
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
GTTG+ KGV+ +H+ + SL S VVL V+PMFHV + L
Sbjct: 186 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 245
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK--LVGSGAA 319
V+ + D + + VT VP + LALA + +L+ +VG AA
Sbjct: 246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 305
Query: 320 PLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG---TLVAGVEA 376
P + L+ ++ G + Q GYG+TET +P+ ++N + S S TL A
Sbjct: 306 P--RSLIARFERM--GVEVRQ-GYGLTET-SPVVVQNFVKSHLESLSEEEKLTLKAKTGL 359
Query: 377 QI------VSVDTLKPLPPN--QLGEIWVRGPNVTPG 405
I V+ + +P+P + LGE+ ++GP +T G
Sbjct: 360 PIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 396
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 132/311 (42%), Gaps = 24/311 (7%)
Query: 55 LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
L+ ++ ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
+EL++ +K ++ V + +V D + GS DL
Sbjct: 90 SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
+ + P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
+ ALA + + SL+ V A + ++E +++PG + GYG TE
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN--GYGTTEAM 310
Query: 350 APISLENPLVG 360
+ + P G
Sbjct: 311 NSLYMRQPKTG 321
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 55 LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
L+ ++ ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
+EL++ +K ++ V + +V D + GS DL
Sbjct: 90 SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
+ + P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
+ ALA + + SL+ V A + ++E +++PG + YG TE
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN--AYGTTEAM 310
Query: 350 APISLENPLVG 360
+ + P G
Sbjct: 311 NSLYMRQPKTG 321
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 55 LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
L+ ++ ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
+EL++ +K ++ V + +V D + GS DL
Sbjct: 90 SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
+ + P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
+ ALA + + SL+ V A + ++E +++PG + YG TE
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--YGTTEAM 310
Query: 350 APISLENPLVG 360
+ + P G
Sbjct: 311 NSLYMRQPKTG 321
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 55 LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
L+ ++ ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
+EL++ +K ++ V + +V D + GS DL
Sbjct: 90 SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
+ + P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
+ ALA + + SL+ V A + ++E +++PG + YG TE
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--YGTTEAM 310
Query: 350 APISLENPLVG 360
+ + P G
Sbjct: 311 NSLYMRQPKTG 321
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 55 LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
L+ ++ ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
+EL++ +K ++ V + +V D + GS DL
Sbjct: 90 SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
+ + P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
+ ALA + + SL+ V A + ++E +++PG + YG TE
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--YGTTEAM 310
Query: 350 APISLENPLVG 360
+ + P G
Sbjct: 311 NSLYMRQPKTG 321
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48 DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
D + +S+ + V + +++ LGI K DVV I+ P + L IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
++ ++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
++ AA+ G+ + C + V G S +LY L G + G +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
R ++K++V + + P I AL + + D SSL+++GS P+ E
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAW 395
Query: 327 EDCQKNI 333
E K I
Sbjct: 396 EWYWKKI 402
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 99/447 (22%), Positives = 174/447 (38%), Gaps = 68/447 (15%)
Query: 26 SFSMVHFLFRNSASYSSKLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVV 82
++ +V R+S KLA+I D +++ +F K K ++ F GI K D V
Sbjct: 58 AYDVVDVYARDSPE---KLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYV 114
Query: 83 LIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142
++ + F C LG+ +GAIA A + ++ +++ + K+++ + E D +
Sbjct: 115 MLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAED-DVPEQ 173
Query: 143 LNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP--DVSVKQTDAAALLYS 200
++ G F +E S + + P +VS K D + +S
Sbjct: 174 VDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFS 233
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAH--QELVGELDHVVL-------CVLPMFH---VF 248
SGT G K ++ H N +++A Q + + H + CV + +
Sbjct: 234 SGTAGFPK--MVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA 291
Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
G +V +YD +F+ + L KY VT + P I L K L ++
Sbjct: 292 GCAVFVYD----------YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSH-YNF 340
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC-----------APISLENP 357
S+LK PL E+ + G + + G+G TET P S+ P
Sbjct: 341 STLKYAVVAGEPLNPEVFNRFLE-FTGIKLME-GFGQTETVVTIATFPWMEPKPGSIGKP 398
Query: 358 LVGVR-----RSGSAGTLVAGVEAQIVSVDTLKPLP----------PNQLGEIWVRGPNV 402
G + R G + G E +IV ++T++ P P + E W G
Sbjct: 399 TPGYKIELMDRDGRLCEV--GEEGEIV-INTMEGKPVGLFVHYGKDPERTEETWHDGYYH 455
Query: 403 TPGIVYINFFVFTLFLWGCEHTDSFIR 429
T + +++ +LW D I+
Sbjct: 456 TGDMAWMD---EDGYLWFVGRADDIIK 479
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48 DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
D + +S+ + V + +++ LGI K DVV I+ P + L IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
++ ++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
++ AA+ G+ + C + V G S +LY L G + G +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
R ++K++V + + P I AL + + D SSL+++GS P+ E
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
E K I
Sbjct: 396 EWYWKKI 402
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48 DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
D + +S+ + V + +++ LGI K DVV I+ P + L IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
++ ++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
++ AA+ G+ + C + V G S +LY L G + G +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
R ++K++V + + P I AL + + D SSL+++GS P+ E
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
E K I
Sbjct: 396 EWYWKKI 402
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48 DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
D + +S+ + V + +++ LGI K DVV I+ P + L IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
++ ++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
++ AA+ G+ + C + V G S +LY L G + G +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
R ++K++V + + P I AL + + D SSL+++GS P+ E
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
E K I
Sbjct: 396 EWYWKKI 402
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48 DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
D + +S+ + V + +++ LGI K DVV I+ P + L IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
++ ++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
++ AA+ G+ + C + V G S +LY L G + G +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
R ++K++V + + P I AL + + D SSL+++GS P+ E
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
E K I
Sbjct: 396 EWYWKKI 402
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48 DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
D + +S+ + V + +++ LGI K DVV I+ P + L IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
++ ++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
++ AA+ G+ + C + V G S +LY L G + G +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
R ++K++V + + P I AL + + D SSL+++GS P+ E
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
E K I
Sbjct: 396 EWYWKKI 402
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 146/382 (38%), Gaps = 48/382 (12%)
Query: 39 SYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG 98
S+ LA+I + LS+ + + ++ G+ K D L+ PN F I F
Sbjct: 42 SHPHSLAIICGE--RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99
Query: 99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVI--------TVPELWDKVKDLNL-PAVL 149
++ G + A + EL+ +K PKL+I + + D + D+NL P ++
Sbjct: 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEII 159
Query: 150 LGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLY-SSGTTGVSK 208
L D IE D S D A S G+TG K
Sbjct: 160 L----------MLNHQATDFGLLDWIETPAET--FVDFSSTPADEVAFFQLSGGSTGTPK 207
Query: 209 GVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVS 266
+ TH ++ + A E+ G + +LC LP H F LS L G CVV
Sbjct: 208 LIPRTHNDY---DYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264
Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
+ I++++V + +VP ++ + + K I SLKL+ G A + L
Sbjct: 265 APNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLA 324
Query: 327 EDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD---- 382
+ + + QV +GM E LV R + + + + +S D
Sbjct: 325 RQVPE-VLNCKLQQV-FGMAEG---------LVNYTRLDDSDEQIFTTQGRPISSDDEIK 373
Query: 383 ----TLKPLPPNQLGEIWVRGP 400
+ +P ++G + RGP
Sbjct: 374 IVDEQYREVPEGEIGMLATRGP 395
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 127/307 (41%), Gaps = 26/307 (8%)
Query: 48 DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
D + +S+ + V + +++ LGI K DVV I+ P + L IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
++ ++ + DS+ +LVIT E + D +K+ N+ +V
Sbjct: 161 VIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
++ AA+ G+ + C + V G S +LY L G + G +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
R ++K++V + + P I AL + + D SSL+++GS P+ E
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
E K I
Sbjct: 396 EWYWKKI 402
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 24/311 (7%)
Query: 55 LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
L+ ++ ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
+EL++ +K + AV+ + DL
Sbjct: 90 SAELAELIK-----------------RGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
+ + P + Q + A + Y+SGTTG+ K I+ + + L S L
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
+VVL + P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 193 HGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
+ ALA + + SL+ V A ++E +++PG + YG TE
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI--YGTTEAX 310
Query: 350 APISLENPLVG 360
+ P G
Sbjct: 311 NSLYXRQPKTG 321
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 145/360 (40%), Gaps = 34/360 (9%)
Query: 54 SLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
S+++ + V +V+ + +G+ K D V ++ P I L + IGAI S
Sbjct: 113 SITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAG 172
Query: 113 YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV----LLGSKDXXXXXXXXXXXXXX 168
++ + L ++ D + K+VIT E K + + L +
Sbjct: 173 FSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS 232
Query: 169 XXFHDLIELSGSV------TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
FH +L + T P V D LLY+SG+TG KGV + ++ +L
Sbjct: 233 VAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGAL 292
Query: 223 M-----ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFDIE 273
+ HQE V + + G + ++Y L G + + +
Sbjct: 293 LTMRYTFDTHQE------DVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYS 346
Query: 274 MALRAIEKYRVTVWWVVPPI--ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK 331
I++++VT ++V P +L A +S + + SL+ +GS P+ E+ E +
Sbjct: 347 RYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSE 406
Query: 332 NIPGATIFQVG-YGMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPL 387
I I V Y TE+ + L PL G + GSA G++A ++ +T + L
Sbjct: 407 KIGKNEIPIVDTYWQTESGS--HLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 464
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 98/411 (23%), Positives = 154/411 (37%), Gaps = 81/411 (19%)
Query: 46 LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKD-VVLIFAPNSIHFPI--CFLGVIAI 102
++ + +E+ ++ Q ++ + + G D V+L+FAP P+ FLG +
Sbjct: 32 FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG---LPLIQAFLGCLYA 88
Query: 103 GAIASTANPVYTVSELSKQ---VKDSNPKLVI---------TVPELWDKVKDLNLPAVLL 150
G IA P L K V +S P +V+ T EL K L +PA+ L
Sbjct: 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIAL 148
Query: 151 GSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
S IEL+ S + P S+K D A L Y+SG+T KGV
Sbjct: 149 ES----------------------IELNRSSSWQP-TSIKSNDIAFLQYTSGSTXHPKGV 185
Query: 211 ILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
++H N + + S H + ++ LP H GL + + G +
Sbjct: 186 XVSHHNLLDNLNKIFTSFHX----NDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXS 241
Query: 269 KFDIEMA----LRAIEKYRVTVWW---VVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
F L+ I KY+ T+ + + D+SS +GA P+
Sbjct: 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPV 301
Query: 322 GKELMEDCQKNIPG----ATIFQVGYGMTE-----------------TCAPISLENPLVG 360
+E E + F YG+ E T A ++ V
Sbjct: 302 REETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVH 361
Query: 361 VRRSGSAGT--LVAG----VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
S G+ LV+ E +I+ DTL P +Q+GEIWV+ +V G
Sbjct: 362 FADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKG 412
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/396 (21%), Positives = 155/396 (39%), Gaps = 56/396 (14%)
Query: 25 PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
P+ + VH LF A+ + + ++DE L++ +++H LG+ +V +
Sbjct: 72 PAGACVHELFEAQAARAPDAVALLHEADE-LTYGALNERANRLAHRLVGLGVAPGTLVGV 130
Query: 85 FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
+ L V+ G + +P + V L+ ++D+ L++T L ++
Sbjct: 131 HLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTT 190
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD----VSVKQTDAAALLYS 200
L + +D P V D A ++++
Sbjct: 191 T----------------------------LYVEDEAASDAPAGNLATGVGPEDVACVMFT 222
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQL 258
SG+TG KGV+ H+ L Q+ G D V L P+ + FGL L+ L
Sbjct: 223 SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLE--LFGAL 276
Query: 259 QKG-NCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLV 314
G CV+ G+ + + + ++ VT+ + + N LV + ++
Sbjct: 277 LFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLF-----NFLVDEVPEAFEGVRYA 331
Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSA---GTLV 371
+G P + +++ P A GYG E+ + + +V SG+A G +
Sbjct: 332 ITGGEPASVPHVAKARRDHP-ALRLGNGYGPAESMG-FTTHHAVVAGDLSGTALPIGVPL 389
Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV 407
AG A ++ D LKP LGE++V G + G V
Sbjct: 390 AGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYV 424
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/396 (21%), Positives = 155/396 (39%), Gaps = 56/396 (14%)
Query: 25 PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
P+ + VH LF A+ + + ++DE L++ +++H LG+ +V +
Sbjct: 72 PAGACVHELFEAQAARAPDAVALLHEADE-LTYGALNERANRLAHRLVGLGVAPGTLVGV 130
Query: 85 FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
+ L V+ G + +P + V L+ ++D+ L++T L ++
Sbjct: 131 HLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTT 190
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD----VSVKQTDAAALLYS 200
L + +D P V D A ++++
Sbjct: 191 T----------------------------LYVEDEAASDAPAGNLATGVGPEDVACVMFT 222
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQL 258
SG+TG KGV+ H+ L Q+ G D V L P+ + FGL L+ L
Sbjct: 223 SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLE--LFGAL 276
Query: 259 QKG-NCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLV 314
G CV+ G+ + + + ++ VT+ + + N LV + ++
Sbjct: 277 LFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLF-----NFLVDEVPEAFEGVRYA 331
Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSA---GTLV 371
+G P + +++ P A GYG E+ + + +V SG+A G +
Sbjct: 332 ITGGEPASVPHVAKARRDHP-ALRLGNGYGPAESMG-FTTHHAVVAGDLSGTALPIGVPL 389
Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV 407
AG A ++ D LKP LGE++V G + G V
Sbjct: 390 AGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYV 424
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 20/166 (12%)
Query: 51 SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
S ++LS+ + +++ + G K VV ++ S+ I LGV+ GA +
Sbjct: 486 SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVD 545
Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXX 170
P +S + DS ++T E+ ++ +L L
Sbjct: 546 PKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTL-------------------F 586
Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN 216
D +D P ++ D A ++Y+SGTTG KG I TH N
Sbjct: 587 IDDQTRFEEQASD-PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 186 DVSVKQ---TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL 242
DV++++ D A L Y+SG+T +GVI+TH+ + A+L +H + + L
Sbjct: 166 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHRE-VXANLRAISHDGIKLRPGDRCVSWL 224
Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA 298
P +H GL L + V + D L+ I K R TV V PP L
Sbjct: 225 PFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTV-SVAPPFGYELC 283
Query: 299 KNSLVRK----FDISSLKLVGSGAAPLGKELME---DC--QKNIPGATIFQVGYGMTETC 349
+ + K D+S ++ G GA P+ E + +C Q N T F YG+ E
Sbjct: 284 QRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKT-FXPCYGLAENA 342
Query: 350 APISLENPLVGV 361
+S + GV
Sbjct: 343 LAVSFSDEASGV 354
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 144/393 (36%), Gaps = 52/393 (13%)
Query: 29 MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
+ L R++AS S +A+ID + LS+ + ++ S R GI + L+ N
Sbjct: 29 LTDILTRHAASDS--IAVIDGE--RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGN 84
Query: 89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
I F ++ +G A + SEL+ P L+I D+ L
Sbjct: 85 VAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIA-----DRQHALFSGDD 139
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLIE-LSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
L + H+L + ++ D + A S GTTG
Sbjct: 140 FLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTP 199
Query: 208 KGVILTHKNF---IAASLMISAHQELVGELDHVVLCVLPMFHVFGLS------VILYDQL 258
K + TH ++ + S+ I + LC +P H + +S V L
Sbjct: 200 KLIPRTHNDYYYSVRRSVEICQFTQQT-----RYLCAIPAAHNYAMSSPGSLGVFL---- 250
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR---KFDISSLKLVG 315
G VV + IEK++V V +VPP + +L +L+ + ++SLKL+
Sbjct: 251 -AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-SLWLQALIEGESRAQLASLKLLQ 308
Query: 316 SGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVE 375
G A L L I G + QV +GM E LV R + + +
Sbjct: 309 VGGARLSATLAARIPAEI-GCQLQQV-FGMAEG---------LVNYTRLDDSAEKIIHTQ 357
Query: 376 AQIVSVDTL--------KPLPPNQLGEIWVRGP 400
+ D PLP ++G + RGP
Sbjct: 358 GYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGP 390
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 21/237 (8%)
Query: 179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
GSV+ D VK+ + ++Y+SG+TG KGV ++ N + + I A + G +
Sbjct: 132 GSVSQ--DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG--GKIF 187
Query: 239 LCVLPMFHVFGLSVI-LYDQLQKG---NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
L P F LSV+ LY LQ G +CV ++ ++K + VW P +
Sbjct: 188 LNQAPF--SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFV 245
Query: 295 -LALAKNSLVRKFDISSLKLVGSGA---APLGKELMEDCQKNIPGATIFQVGYGMTE-TC 349
+ L + + + G + K L+E P A IF YG TE T
Sbjct: 246 QMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLE----RFPKAKIFNT-YGPTEATV 300
Query: 350 APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPLPPNQLGEIWVRGPNVTPG 405
A S+E + RS S A + I +D +PLP + GEI + GP+V+ G
Sbjct: 301 AVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRG 357
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 131/337 (38%), Gaps = 51/337 (15%)
Query: 25 PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
P +H LF S I + +E L++ + +++ F GI K +V I
Sbjct: 36 PRDKTIHQLFEEQVSKRPNNVAIVCE-NEQLTYHELNVKANQLARIFIEKGIGKDTLVGI 94
Query: 85 FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
SI I L V+ G + Y + + DS ++++T L + ++
Sbjct: 95 MMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ 154
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGT 203
+ ++ D I++ G+ +P K TD A ++Y+SGT
Sbjct: 155 FNGQVEIFEE------------------DTIKIREGTNLHVPS---KSTDLAYVIYTSGT 193
Query: 204 TGVSKGVILTHKN------FIAASLMISAHQELVGELDHVVL--CVLPMFHVFGLSVILY 255
TG KG +L HK F SL ++ ++ +G+ + V MF LY
Sbjct: 194 TGNPKGTMLEHKGISNLKVFFENSLNVT-EKDRIGQFASISFDASVWEMFMALLTGASLY 252
Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
L+ + + KF+ + I + +TV + P ++ L R I +L G
Sbjct: 253 IILK--DTINDFVKFE-----QYINQKEITVITLPPTYVVHLDPE---RILSIQTLITAG 302
Query: 316 SGAAPLGKELMEDCQKNIPGATIFQVGYGMTET--CA 350
S +P L+ ++ + + YG TET CA
Sbjct: 303 SATSP---SLVNKWKEKV----TYINAYGPTETTICA 332
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 151/400 (37%), Gaps = 76/400 (19%)
Query: 33 LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
LFR A+ + + + A+ D+ +S+ + + V+ + G+ D V +
Sbjct: 40 LFREVAATAPERTALSAE-DDRISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPGAEA 98
Query: 93 PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGS 152
+ L ++ GA + VS + DS +I P V + A +
Sbjct: 99 IVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGCAVTRVVRTAAVAEC 158
Query: 153 KDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL 212
KD G VT P + D A ++Y+SGTTG KGV +
Sbjct: 159 KDAE---------------------PGPVTGAPGPGAE--DMAYVIYTSGTTGNPKGVPV 195
Query: 213 THKNFIAASLMISAHQELVGELDHVVLCVLPMFH--VFGLSVI-LYDQLQKGNCVVSMGK 269
H N +A L+ A D L +FH F SV ++ G +V +
Sbjct: 196 RHANVLA--LLAGAPSVFDFSGDDRWL----LFHSLSFDFSVWEIWGAFSTGAELVVLPH 249
Query: 270 FDIEMALRAIEKY-------RVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
+ A R E+Y VTV P LAL + ++ D+S L+ V G L
Sbjct: 250 W----AARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLRYVIFGGEKLT 305
Query: 323 KELMEDCQKNIPGATIFQV-------GYGMTE----------TCAPISLENPLVGVRRSG 365
++ P A F + GYG+TE T A ++ + ++G R
Sbjct: 306 APMLR------PWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQDASIIG-RALP 358
Query: 366 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
S GT V G + + V+ P + GE+W+ G + G
Sbjct: 359 SFGTRVVGDDGRDVA--------PGETGELWLSGAQLAEG 390
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 31/208 (14%)
Query: 54 SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA---STAN 110
+L++SQ + V+ G T D V+I AP + + + FLG + G IA S
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCGSTG-DRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXX 170
T + DS+P ++T D V + A G
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDV--VQHVARRPGESPPSIIEV---------- 164
Query: 171 FHDLIELSGSVTDIPDVSVKQTD----AAALLYSSGTTGVSKGVILTHKNF-IAASLMIS 225
DL++L D P+ + D A L Y+SG+T GV+++H+N + ++S
Sbjct: 165 --DLLDL-----DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMS 217
Query: 226 ---AHQELVGELDHVVLCVLPMFHVFGL 250
A + + + ++ LP +H GL
Sbjct: 218 GYFADTDGIPPPNSALVSWLPFYHDMGL 245
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
+IV DT P +GEIWV G NV G
Sbjct: 405 RIVDSDTCIECPDGTVGEIWVHGDNVANG 433
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 31/208 (14%)
Query: 54 SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA---STAN 110
+L++SQ + V+ G T D V+I AP + + + FLG + G IA S
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCGSTG-DRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXX 170
T + DS+P ++T D V + A G
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDV--VQHVARRPGESPPSIIEV---------- 164
Query: 171 FHDLIELSGSVTDIPDVSVKQTD----AAALLYSSGTTGVSKGVILTHK----NFIAASL 222
DL++L D P+ + D A L Y+SG+T GV+ +H+ NF
Sbjct: 165 --DLLDL-----DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXS 217
Query: 223 MISAHQELVGELDHVVLCVLPMFHVFGL 250
A + + + ++ LP +H GL
Sbjct: 218 GYFADTDGIPPPNSALVSWLPFYHDXGL 245
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
+IV DT P +GEIWV G NV G
Sbjct: 405 RIVDSDTCIECPDGTVGEIWVHGDNVANG 433
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 19/231 (8%)
Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
P+ +VK + ++Y+SG+TG KGV +T+ + S A ++ + V L P
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV--SFTKWAVEDFNLQTGQVFLNQAPF 194
Query: 245 FHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALR------AIEKYRVTVWWVVPPIILAL 297
F LSV+ +Y L G + ++ K +M R ++E+ + VW P
Sbjct: 195 --SFDLSVMDIYPSLVTGGTLWAIDK---DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 298 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPIS---L 354
+ + + ++K L E+ + P ATI YG TE ++ +
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNT-YGPTEATVAVTGIHV 308
Query: 355 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
++ +S G + I+ D P + GEI + GP+V+ G
Sbjct: 309 TEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVSVG 358
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 19/231 (8%)
Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
P+ +VK + ++Y+SG+TG KGV +T+ + S A ++ + V L P
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV--SFTKWAVEDFNLQTGQVFLNQAPF 194
Query: 245 FHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALR------AIEKYRVTVWWVVPPIILAL 297
F LSV+ +Y L G + ++ K +M R ++E+ + VW P
Sbjct: 195 --SFDLSVMDIYPSLVTGGTLWAIDK---DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 298 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPIS---L 354
+ + + ++K L E+ + P ATI YG TE ++ +
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNT-YGPTEATVAVTGIHV 308
Query: 355 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
++ +S G + I+ D P + GEI + GP+V+ G
Sbjct: 309 TEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVSVG 358
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 94/250 (37%), Gaps = 37/250 (14%)
Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV 247
SVK D ++++SGTTG KGV ++H N ++ + + +L P +
Sbjct: 141 SVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPP--YS 198
Query: 248 FGLSVILY-DQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPII--------L 295
F LSV+ + L G + ++ K D + I + V +W P
Sbjct: 199 FDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF 258
Query: 296 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC---API 352
AK + F +L S A ++L E P A I YG TE + I
Sbjct: 259 CQAKMPALTHFYFDGEELTVSTA----RKLFE----RFPSAKIIN-AYGPTEATVALSAI 309
Query: 353 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN-- 410
+ +V G I+ D K L + GEI V GP V+ G Y+N
Sbjct: 310 EITREMVDNYTRLPIGYPKPDSPTYIIDEDG-KELSSGEQGEIIVTGPAVSKG--YLNNP 366
Query: 411 ------FFVF 414
FF F
Sbjct: 367 EKTAEAFFTF 376
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 100/249 (40%), Gaps = 22/249 (8%)
Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
V +A+A+ ++SGT+G+ K ++ + + M + L + ++ +
Sbjct: 201 VETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGL--QASDIMWTISDTGW 258
Query: 247 VFGLSVILYDQLQKGNC--VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 304
+ + L + G C V + KFD + L+ + Y + P + L +
Sbjct: 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ---- 314
Query: 305 KFDISSLKLVG-SGAAPLGKELMEDCQKNIPGATIFQV--GYGMTETCAPISLENPLVGV 361
D+SS K +G+ L+ + +N T + YG TET + +
Sbjct: 315 --DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM--K 370
Query: 362 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC 421
+ G GT + + QI+ D LPP G+I +R + P +F+ ++
Sbjct: 371 IKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRP------IGIFSGYVDNP 423
Query: 422 EHTDSFIRG 430
+ T + IRG
Sbjct: 424 DKTAANIRG 432
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 100/249 (40%), Gaps = 22/249 (8%)
Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
V +A+A+ ++SGT+G+ K ++ + + M + L + ++ +
Sbjct: 201 VETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGL--QASDIMWTISDTGW 258
Query: 247 VFGLSVILYDQLQKGNC--VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 304
+ + L + G C V + KFD + L+ + Y + P + L +
Sbjct: 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ---- 314
Query: 305 KFDISSLKLVG-SGAAPLGKELMEDCQKNIPGATIFQV--GYGMTETCAPISLENPLVGV 361
D+SS K +G+ L+ + +N T + YG TET + +
Sbjct: 315 --DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM--K 370
Query: 362 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC 421
+ G GT + + QI+ D LPP G+I +R + P +F+ ++
Sbjct: 371 IKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRP------IGIFSGYVDNP 423
Query: 422 EHTDSFIRG 430
+ T + IRG
Sbjct: 424 DKTAANIRG 432
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,904,658
Number of Sequences: 62578
Number of extensions: 454821
Number of successful extensions: 1104
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 97
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)