Query 013780
Match_columns 436
No_of_seqs 147 out of 1640
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 16:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.5E-64 5.1E-69 504.6 37.2 410 7-435 4-420 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 3.1E-62 1.1E-66 488.7 39.6 411 4-435 4-427 (548)
3 3rix_A Luciferase, luciferin 4 100.0 2.2E-62 7.7E-67 490.4 37.6 408 8-435 4-425 (550)
4 3g7s_A Long-chain-fatty-acid-- 100.0 1.4E-61 4.9E-66 484.5 33.5 387 26-435 18-425 (549)
5 3t5a_A Long-chain-fatty-acid-- 100.0 6.8E-62 2.3E-66 479.9 27.3 394 21-435 18-469 (480)
6 3r44_A Fatty acyl COA syntheta 100.0 7.6E-61 2.6E-65 475.6 31.3 380 26-435 15-399 (517)
7 3o83_A Peptide arylation enzym 100.0 1.6E-60 5.6E-65 476.0 32.8 384 27-435 30-425 (544)
8 3fce_A D-alanine--poly(phospho 100.0 1.3E-60 4.4E-65 473.9 31.9 380 27-435 1-386 (512)
9 4fuq_A Malonyl COA synthetase; 100.0 1.1E-60 3.6E-65 472.9 29.6 378 31-435 4-385 (503)
10 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.7E-60 1.3E-64 472.9 33.8 380 27-435 25-416 (539)
11 3etc_A AMP-binding protein; ad 100.0 7.2E-60 2.5E-64 473.9 35.7 388 25-435 53-461 (580)
12 3tsy_A Fusion protein 4-coumar 100.0 5.2E-60 1.8E-64 502.9 36.2 415 9-435 45-467 (979)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.2E-59 7.4E-64 464.1 34.6 375 27-435 2-388 (504)
14 1v25_A Long-chain-fatty-acid-C 100.0 3.9E-59 1.3E-63 465.8 35.4 385 27-435 18-421 (541)
15 2v7b_A Benzoate-coenzyme A lig 100.0 4.6E-59 1.6E-63 464.6 35.5 384 27-435 23-415 (529)
16 3e7w_A D-alanine--poly(phospho 100.0 3.1E-59 1.1E-63 463.7 31.2 378 27-435 1-385 (511)
17 3l8c_A D-alanine--poly(phospho 100.0 2.7E-59 9.2E-64 465.6 30.2 380 27-435 4-389 (521)
18 3ivr_A Putative long-chain-fat 100.0 5.3E-59 1.8E-63 462.0 32.2 375 26-435 5-384 (509)
19 3c5e_A Acyl-coenzyme A synthet 100.0 2.7E-58 9.1E-63 461.9 34.4 382 27-435 37-442 (570)
20 4gr5_A Non-ribosomal peptide s 100.0 1.4E-58 4.8E-63 464.6 32.3 373 26-435 74-455 (570)
21 1pg4_A Acetyl-COA synthetase; 100.0 3E-58 1E-62 468.4 34.4 405 19-435 68-503 (652)
22 1amu_A GRSA, gramicidin synthe 100.0 4E-58 1.4E-62 459.9 34.1 371 27-435 39-416 (563)
23 3rg2_A Enterobactin synthase c 100.0 1.7E-57 5.8E-62 460.7 35.8 381 26-435 26-420 (617)
24 1ry2_A Acetyl-coenzyme A synth 100.0 9.9E-58 3.4E-62 464.7 34.1 407 19-435 74-512 (663)
25 4dg8_A PA1221; ANL superfamily 100.0 7.7E-58 2.6E-62 461.7 32.1 371 26-435 26-405 (620)
26 3kxw_A Saframycin MX1 syntheta 100.0 4.1E-58 1.4E-62 464.1 28.6 388 26-435 10-445 (590)
27 3ite_A SIDN siderophore synthe 100.0 1.2E-56 4E-61 450.5 30.4 381 25-435 18-413 (562)
28 3gqw_A Fatty acid AMP ligase; 100.0 3E-56 1E-60 449.4 32.1 378 27-435 21-448 (576)
29 3ipl_A 2-succinylbenzoate--COA 100.0 5.4E-57 1.8E-61 446.9 25.2 381 27-435 1-384 (501)
30 3nyq_A Malonyl-COA ligase; A/B 100.0 6.6E-57 2.3E-61 445.8 21.9 363 27-435 22-391 (505)
31 2vsq_A Surfactin synthetase su 100.0 2.6E-54 8.9E-59 470.1 31.8 376 27-435 464-847 (1304)
32 3qov_A Phenylacetate-coenzyme 100.0 1E-32 3.4E-37 268.0 16.9 223 188-435 81-308 (436)
33 2y27_A Phenylacetate-coenzyme 100.0 2.5E-31 8.4E-36 258.3 17.6 223 188-435 86-313 (437)
34 3hgu_A EHPF; phenazine, antibi 100.0 5.9E-32 2E-36 256.8 13.0 227 188-431 87-349 (369)
35 4gs5_A Acyl-COA synthetase (AM 100.0 3.2E-32 1.1E-36 256.7 9.7 193 191-405 36-228 (358)
36 2y4o_A Phenylacetate-coenzyme 100.0 4.1E-31 1.4E-35 257.2 15.5 223 188-435 88-315 (443)
37 4eql_A 4-substituted benzoates 97.0 0.0028 9.4E-08 62.1 9.7 86 308-401 296-395 (581)
38 4b2g_A GH3-1 auxin conjugating 96.7 0.0044 1.5E-07 60.9 8.9 31 189-219 96-127 (609)
39 4epl_A Jasmonic acid-amido syn 96.1 0.021 7.2E-07 55.8 9.2 32 188-219 94-126 (581)
40 2y27_A Phenylacetate-coenzyme 94.2 0.33 1.1E-05 46.0 11.4 88 53-141 108-197 (437)
41 3qov_A Phenylacetate-coenzyme 93.8 0.33 1.1E-05 46.0 10.4 88 53-141 104-193 (436)
42 2y4o_A Phenylacetate-coenzyme 93.4 0.53 1.8E-05 44.7 11.2 87 53-140 110-198 (443)
43 3ipl_A 2-succinylbenzoate--COA 88.3 4.8 0.00016 38.7 12.3 101 39-143 160-268 (501)
44 3hgu_A EHPF; phenazine, antibi 87.6 1.8 6E-05 39.8 8.4 88 53-142 109-221 (369)
45 1mdb_A 2,3-dihydroxybenzoate-A 86.7 8.3 0.00028 37.4 13.1 98 40-141 180-287 (539)
46 2d1s_A Luciferase, luciferin 4 86.0 4.1 0.00014 39.8 10.4 99 42-142 192-299 (548)
47 3o83_A Peptide arylation enzym 85.7 8.4 0.00029 37.4 12.6 97 40-140 189-295 (544)
48 3r44_A Fatty acyl COA syntheta 83.6 11 0.00037 36.3 12.2 98 40-142 168-274 (517)
49 4gs5_A Acyl-COA synthetase (AM 83.0 7.6 0.00026 35.4 10.3 84 53-142 55-139 (358)
50 3fce_A D-alanine--poly(phospho 80.9 7 0.00024 37.6 9.6 99 40-141 142-250 (512)
51 3e7w_A D-alanine--poly(phospho 80.6 8.2 0.00028 37.1 10.0 100 40-142 141-250 (511)
52 3rix_A Luciferase, luciferin 4 80.5 9.2 0.00032 37.2 10.4 101 41-142 189-297 (550)
53 3rg2_A Enterobactin synthase c 79.5 22 0.00077 35.0 13.0 97 40-140 182-288 (617)
54 3t5a_A Long-chain-fatty-acid-- 78.6 7.6 0.00026 36.9 9.0 108 190-299 37-148 (480)
55 3kxw_A Saframycin MX1 syntheta 78.6 10 0.00035 37.2 10.2 99 39-140 164-274 (590)
56 1t5h_X 4-chlorobenzoyl COA lig 77.9 12 0.00039 36.0 10.1 99 39-141 150-259 (504)
57 3c5e_A Acyl-coenzyme A synthet 76.7 21 0.00073 34.8 11.8 100 40-142 204-313 (570)
58 3ni2_A 4-coumarate:COA ligase; 76.3 12 0.0004 36.3 9.7 99 190-297 35-135 (536)
59 3g7s_A Long-chain-fatty-acid-- 75.5 17 0.00058 35.2 10.7 106 190-298 32-139 (549)
60 1v25_A Long-chain-fatty-acid-C 74.9 16 0.00056 35.3 10.4 101 40-141 174-282 (541)
61 2v7b_A Benzoate-coenzyme A lig 71.7 13 0.00043 35.9 8.6 100 40-142 181-290 (529)
62 3ivr_A Putative long-chain-fat 70.7 41 0.0014 32.0 12.1 99 40-142 158-264 (509)
63 3nyq_A Malonyl-COA ligase; A/B 69.4 39 0.0013 32.2 11.5 99 39-142 152-259 (505)
64 1ry2_A Acetyl-coenzyme A synth 67.3 29 0.00099 34.6 10.4 98 190-292 95-195 (663)
65 3tbh_A O-acetyl serine sulfhyd 66.3 23 0.00077 31.9 8.5 65 71-135 62-127 (334)
66 4gr5_A Non-ribosomal peptide s 65.2 31 0.0011 33.5 10.0 100 39-142 211-319 (570)
67 1amu_A GRSA, gramicidin synthe 64.7 32 0.0011 33.4 10.0 97 190-297 52-150 (563)
68 1pg4_A Acetyl-COA synthetase; 62.9 36 0.0012 33.8 10.1 100 41-142 255-366 (652)
69 4dg8_A PA1221; ANL superfamily 61.4 35 0.0012 33.7 9.6 98 40-141 162-268 (620)
70 3etc_A AMP-binding protein; ad 60.0 37 0.0013 33.2 9.4 100 40-142 223-332 (580)
71 3vc3_A Beta-cyanoalnine syntha 58.9 31 0.0011 31.1 8.0 69 67-135 74-142 (344)
72 3gqw_A Fatty acid AMP ligase; 58.7 34 0.0012 33.1 9.0 99 40-140 174-284 (576)
73 3ezx_A MMCP 1, monomethylamine 57.6 45 0.0015 27.7 8.2 82 245-328 104-194 (215)
74 3l8c_A D-alanine--poly(phospho 57.5 77 0.0026 30.2 11.2 101 40-141 143-253 (521)
75 3ite_A SIDN siderophore synthe 56.3 49 0.0017 32.0 9.6 99 190-291 33-134 (562)
76 3tsy_A Fusion protein 4-coumar 54.8 42 0.0014 35.2 9.3 97 189-294 73-171 (979)
77 4fuq_A Malonyl COA synthetase; 54.3 31 0.0011 32.9 7.7 81 211-293 28-110 (503)
78 4h1h_A LMO1638 protein; MCCF-l 53.1 45 0.0015 29.9 8.0 60 75-134 8-86 (327)
79 3sr3_A Microcin immunity prote 48.6 50 0.0017 29.7 7.5 60 75-134 9-87 (336)
80 1z7w_A Cysteine synthase; tran 47.6 74 0.0025 28.2 8.6 64 72-135 58-122 (322)
81 4e5s_A MCCFLIKE protein (BA_56 47.6 62 0.0021 29.0 8.0 60 75-134 8-86 (331)
82 4eez_A Alcohol dehydrogenase 1 47.1 42 0.0014 30.1 7.0 79 53-134 135-216 (348)
83 3tla_A MCCF; serine protease, 45.9 61 0.0021 29.6 7.7 61 74-134 38-117 (371)
84 4aec_A Cysteine synthase, mito 45.2 80 0.0027 29.5 8.5 63 72-134 166-229 (430)
85 3ju7_A Putative PLP-dependent 45.0 55 0.0019 29.8 7.5 62 69-133 68-136 (377)
86 1zsy_A Mitochondrial 2-enoyl t 42.6 87 0.003 28.1 8.4 80 53-133 138-223 (357)
87 2q3b_A Cysteine synthase A; py 41.8 1.1E+02 0.0038 26.9 8.8 64 71-135 58-122 (313)
88 2vsq_A Surfactin synthetase su 41.5 79 0.0027 34.4 9.1 99 40-142 605-713 (1304)
89 1o69_A Aminotransferase; struc 40.6 1.2E+02 0.004 27.6 9.0 61 71-134 64-130 (394)
90 3tqh_A Quinone oxidoreductase; 40.3 77 0.0026 28.0 7.5 76 53-133 124-203 (321)
91 2pqm_A Cysteine synthase; OASS 39.4 1.1E+02 0.0038 27.3 8.5 62 73-135 71-133 (343)
92 2jtq_A Phage shock protein E; 39.1 51 0.0017 22.2 4.8 46 53-105 22-67 (85)
93 1ve1_A O-acetylserine sulfhydr 38.0 1.9E+02 0.0065 25.2 9.6 63 72-135 52-117 (304)
94 3s2e_A Zinc-containing alcohol 37.7 1.1E+02 0.0038 27.1 8.2 77 53-133 138-217 (340)
95 1eg5_A Aminotransferase; PLP-d 37.5 1.6E+02 0.0053 26.2 9.4 56 77-133 87-146 (384)
96 2egu_A Cysteine synthase; O-ac 36.9 1.2E+02 0.0041 26.6 8.2 63 72-135 57-120 (308)
97 2v03_A Cysteine synthase B; py 36.0 1.6E+02 0.0056 25.7 8.9 62 72-134 53-115 (303)
98 3ri6_A O-acetylhomoserine sulf 33.8 1.1E+02 0.0037 28.5 7.6 25 323-348 357-381 (430)
99 3l6b_A Serine racemase; pyrido 33.7 79 0.0027 28.4 6.5 58 78-136 75-132 (346)
100 3dwg_A Cysteine synthase B; su 33.1 1.5E+02 0.0052 26.2 8.2 62 72-134 65-127 (325)
101 1h2b_A Alcohol dehydrogenase; 32.7 1.2E+02 0.004 27.3 7.5 79 53-134 153-239 (359)
102 1t3i_A Probable cysteine desul 32.5 1.7E+02 0.0059 26.4 8.9 14 76-89 115-128 (420)
103 3a2b_A Serine palmitoyltransfe 32.4 1.9E+02 0.0065 26.0 9.1 55 76-134 124-181 (398)
104 2e7j_A SEP-tRNA:Cys-tRNA synth 32.1 1.7E+02 0.0059 25.8 8.7 55 76-133 90-154 (371)
105 3dzz_A Putative pyridoxal 5'-p 31.5 1.1E+02 0.0039 27.4 7.3 55 76-133 106-167 (391)
106 3two_A Mannitol dehydrogenase; 31.4 1.4E+02 0.0048 26.6 7.8 75 53-131 148-225 (348)
107 4hvk_A Probable cysteine desul 31.3 1E+02 0.0036 27.3 7.1 10 323-332 302-311 (382)
108 2hjv_A ATP-dependent RNA helic 31.3 1.8E+02 0.0061 22.3 7.6 75 63-140 22-99 (163)
109 1zl0_A Hypothetical protein PA 30.6 1.5E+02 0.0051 26.2 7.5 60 75-134 13-88 (311)
110 3ijw_A Aminoglycoside N3-acety 30.4 36 0.0012 29.4 3.3 24 65-88 18-41 (268)
111 4b7c_A Probable oxidoreductase 30.0 1.5E+02 0.005 26.2 7.7 60 72-133 143-202 (336)
112 3kgw_A Alanine-glyoxylate amin 29.7 1.3E+02 0.0046 26.8 7.5 20 114-133 136-155 (393)
113 4ej6_A Putative zinc-binding d 29.7 1.6E+02 0.0055 26.5 7.9 59 70-132 174-233 (370)
114 3isl_A Purine catabolism prote 29.6 1.6E+02 0.0054 26.6 8.1 57 76-133 83-143 (416)
115 1elu_A L-cysteine/L-cystine C- 29.6 1.7E+02 0.0057 26.1 8.2 35 76-110 98-133 (390)
116 1mdo_A ARNB aminotransferase; 29.1 1E+02 0.0034 27.8 6.5 58 72-133 72-134 (393)
117 1y7l_A O-acetylserine sulfhydr 28.6 2.1E+02 0.0073 25.0 8.4 91 42-135 26-117 (316)
118 3fpc_A NADP-dependent alcohol 28.6 1.3E+02 0.0046 26.8 7.2 77 53-133 138-218 (352)
119 3sma_A FRBF; N-acetyl transfer 28.3 41 0.0014 29.3 3.3 30 52-88 19-48 (286)
120 2nyg_A YOKD protein; PFAM02522 28.2 41 0.0014 29.2 3.3 23 66-88 17-39 (273)
121 2z9v_A Aspartate aminotransfer 27.9 1.5E+02 0.005 26.6 7.4 57 76-133 80-141 (392)
122 3jv7_A ADH-A; dehydrogenase, n 27.9 1.4E+02 0.0048 26.5 7.1 77 55-134 143-224 (345)
123 2bkw_A Alanine-glyoxylate amin 27.8 2E+02 0.0069 25.5 8.4 56 77-133 84-144 (385)
124 2jgn_A DBX, DDX3, ATP-dependen 27.5 2.1E+02 0.0071 22.6 7.5 76 63-140 32-110 (185)
125 2fsx_A RV0390, COG0607: rhodan 27.5 63 0.0021 24.7 4.1 41 65-105 66-106 (148)
126 1gu7_A Enoyl-[acyl-carrier-pro 27.3 1.4E+02 0.0048 26.7 7.1 79 54-133 138-223 (364)
127 1kmj_A Selenocysteine lyase; p 27.3 1.9E+02 0.0065 25.9 8.1 13 76-88 110-122 (406)
128 3kki_A CAI-1 autoinducer synth 27.3 1.3E+02 0.0045 27.3 7.0 55 76-134 140-194 (409)
129 4eb5_A Probable cysteine desul 27.1 1.1E+02 0.0038 27.3 6.4 16 323-340 302-317 (382)
130 1urh_A 3-mercaptopyruvate sulf 26.9 1.1E+02 0.0037 26.3 6.0 40 65-104 72-112 (280)
131 2ayi_A Aminopeptidase T; metal 26.6 1E+02 0.0034 28.6 5.9 51 60-110 4-58 (408)
132 3zrp_A Serine-pyruvate aminotr 26.6 1.9E+02 0.0065 25.6 8.0 58 76-134 74-135 (384)
133 1y80_A Predicted cobalamin bin 26.6 2.3E+02 0.0079 23.0 7.7 55 80-134 89-147 (210)
134 1wy5_A TILS, hypothetical UPF0 26.6 3.2E+02 0.011 23.9 9.2 71 64-134 8-92 (317)
135 1o58_A O-acetylserine sulfhydr 26.5 3E+02 0.01 23.9 8.9 51 85-135 70-120 (303)
136 2ch1_A 3-hydroxykynurenine tra 26.2 2E+02 0.0069 25.7 8.1 56 77-133 91-150 (396)
137 3ndn_A O-succinylhomoserine su 25.9 2E+02 0.0068 26.4 7.9 56 76-133 117-173 (414)
138 2cf5_A Atccad5, CAD, cinnamyl 25.8 1.1E+02 0.0037 27.5 6.0 79 53-134 151-233 (357)
139 3krt_A Crotonyl COA reductase; 25.8 1.9E+02 0.0064 27.0 7.9 78 53-133 197-280 (456)
140 3hs3_A Ribose operon repressor 25.8 2.7E+02 0.0092 23.4 8.4 65 68-135 2-76 (277)
141 3qwb_A Probable quinone oxidor 25.7 3.4E+02 0.012 23.8 9.4 56 74-133 144-200 (334)
142 3euc_A Histidinol-phosphate am 25.4 1.9E+02 0.0065 25.6 7.7 55 76-133 106-164 (367)
143 1rjw_A ADH-HT, alcohol dehydro 25.2 2.8E+02 0.0096 24.4 8.6 76 53-132 136-214 (339)
144 3a2k_A TRNA(Ile)-lysidine synt 24.9 2.4E+02 0.008 26.5 8.3 69 66-134 4-86 (464)
145 3nnk_A Ureidoglycine-glyoxylat 24.9 2.2E+02 0.0074 25.6 8.0 56 77-133 86-145 (411)
146 3cai_A Possible aminotransfera 24.8 2.1E+02 0.0072 25.7 8.0 16 323-340 348-363 (406)
147 3b8x_A WBDK, pyridoxamine 5-ph 24.6 1.9E+02 0.0065 25.9 7.5 55 75-133 76-135 (390)
148 3kax_A Aminotransferase, class 24.4 2.4E+02 0.0082 25.0 8.2 54 76-133 103-163 (383)
149 1e0c_A Rhodanese, sulfurtransf 24.3 1.2E+02 0.0041 25.8 5.8 41 65-105 67-108 (271)
150 1e0c_A Rhodanese, sulfurtransf 23.9 1E+02 0.0036 26.2 5.3 41 65-105 209-249 (271)
151 3cq5_A Histidinol-phosphate am 23.8 3.1E+02 0.011 24.2 8.8 54 77-133 114-171 (369)
152 3t18_A Aminotransferase class 23.6 2.5E+02 0.0086 25.3 8.3 55 76-133 122-185 (413)
153 1c7n_A Cystalysin; transferase 23.3 1.7E+02 0.0059 26.3 7.0 53 77-132 111-170 (399)
154 3uog_A Alcohol dehydrogenase; 23.1 1.9E+02 0.0065 25.9 7.1 76 53-132 160-239 (363)
155 2rb4_A ATP-dependent RNA helic 22.9 2.7E+02 0.0091 21.6 8.3 71 63-136 21-94 (175)
156 2c81_A Glutamine-2-deoxy-scyll 22.6 1.2E+02 0.0039 27.8 5.7 58 72-133 75-137 (418)
157 2duw_A Putative COA-binding pr 22.6 1.6E+02 0.0056 22.3 5.6 49 80-129 72-120 (145)
158 1yqd_A Sinapyl alcohol dehydro 22.6 2.3E+02 0.0079 25.4 7.6 63 69-134 177-240 (366)
159 3utn_X Thiosulfate sulfurtrans 22.4 1.8E+02 0.0063 25.8 6.6 42 64-105 98-140 (327)
160 2z61_A Probable aspartate amin 22.4 2E+02 0.0068 25.5 7.1 51 76-132 110-160 (370)
161 1zjc_A Aminopeptidase AMPS; me 22.4 1.1E+02 0.0039 28.3 5.4 51 60-110 7-61 (418)
162 2huf_A Alanine glyoxylate amin 22.3 2.7E+02 0.0091 24.8 8.1 56 77-133 92-151 (393)
163 1vj0_A Alcohol dehydrogenase, 22.3 2.7E+02 0.0091 25.1 8.0 60 70-133 186-247 (380)
164 1vjo_A Alanine--glyoxylate ami 22.2 3.8E+02 0.013 23.8 9.1 11 209-219 230-240 (393)
165 3lvm_A Cysteine desulfurase; s 22.1 3.8E+02 0.013 24.1 9.2 12 27-38 36-47 (423)
166 1piw_A Hypothetical zinc-type 21.9 2.5E+02 0.0084 25.1 7.6 77 53-133 151-230 (360)
167 3n75_A LDC, lysine decarboxyla 21.9 2.2E+02 0.0074 28.6 7.6 56 76-134 232-306 (715)
168 4dq6_A Putative pyridoxal phos 21.8 1.9E+02 0.0066 25.8 7.0 52 76-132 111-170 (391)
169 1b9h_A AHBA synthase, protein 21.7 1.8E+02 0.0062 26.0 6.8 57 71-131 70-131 (388)
170 1ofu_X SULA, hypothetical prot 21.7 2.4E+02 0.0083 20.7 6.4 51 68-118 47-99 (119)
171 3goh_A Alcohol dehydrogenase, 21.7 1.8E+02 0.0062 25.4 6.5 74 53-131 114-190 (315)
172 3i16_A Aluminum resistance pro 21.7 1.7E+02 0.0059 27.1 6.6 59 76-134 112-184 (427)
173 1d2f_A MALY protein; aminotran 21.5 2.2E+02 0.0076 25.4 7.3 53 77-132 109-168 (390)
174 3ffh_A Histidinol-phosphate am 21.4 3.2E+02 0.011 24.0 8.3 54 76-133 105-162 (363)
175 3ss7_X D-serine dehydratase; t 21.3 1.9E+02 0.0064 27.0 6.7 57 82-138 162-218 (442)
176 1oft_A SULA, hypothetical prot 21.3 2.8E+02 0.0097 21.7 6.7 36 69-104 90-125 (161)
177 3olh_A MST, 3-mercaptopyruvate 21.0 1.2E+02 0.0042 26.5 5.2 41 65-105 240-280 (302)
178 2rkb_A Serine dehydratase-like 20.9 1.7E+02 0.0058 25.7 6.2 57 79-136 54-110 (318)
179 1t5i_A C_terminal domain of A 20.9 2.9E+02 0.01 21.3 8.0 73 63-138 18-93 (172)
180 3d1p_A Putative thiosulfate su 20.8 1.6E+02 0.0054 21.9 5.2 52 54-105 62-117 (139)
181 3rq1_A Aminotransferase class 20.8 4E+02 0.014 23.9 9.1 54 76-132 123-185 (418)
182 4h27_A L-serine dehydratase/L- 20.7 1.4E+02 0.0048 27.0 5.6 55 82-136 95-149 (364)
183 1rhs_A Sulfur-substituted rhod 20.6 1.5E+02 0.0051 25.7 5.7 41 65-105 226-266 (296)
184 4d9i_A Diaminopropionate ammon 20.6 4.3E+02 0.015 24.0 9.0 54 84-137 116-169 (398)
185 3oon_A Outer membrane protein 20.5 1.4E+02 0.0049 21.8 4.8 59 27-85 33-95 (123)
186 1e5e_A MGL, methionine gamma-l 20.5 2.1E+02 0.0071 26.1 6.9 15 205-219 215-230 (404)
187 1pl8_A Human sorbitol dehydrog 20.5 2.7E+02 0.0093 24.7 7.6 76 53-133 144-223 (356)
188 1uar_A Rhodanese; sulfurtransf 20.2 99 0.0034 26.6 4.4 40 65-104 219-259 (285)
189 2dr1_A PH1308 protein, 386AA l 20.2 3.2E+02 0.011 24.1 8.1 56 77-133 93-153 (386)
190 4dup_A Quinone oxidoreductase; 20.1 3.5E+02 0.012 24.0 8.2 78 53-133 138-219 (353)
191 3gms_A Putative NADPH:quinone 20.1 3.8E+02 0.013 23.5 8.4 77 53-133 115-196 (340)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.5e-64 Score=504.58 Aligned_cols=410 Identities=34% Similarity=0.547 Sum_probs=347.2
Q ss_pred CCcceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 013780 7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA 86 (436)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~ 86 (436)
++..++++..+...+|.+ +|+.++|.++++++|+++|+++..+++.+||+||.++++++|+.|.+.|+++||+|+|++
T Consensus 4 ~~~~i~~~~~~~~~~p~~--~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 81 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFL 81 (536)
T ss_dssp -CCCCBCCSSCCCCCCSS--CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred ccceEEecCCCCCCCCCC--CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 456788888777777765 899999999999999999999986678999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC--CCcEEeccCCcccccccccc
Q 013780 87 PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISR 164 (436)
Q Consensus 87 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 164 (436)
+|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+.... ....++..+ ..
T Consensus 82 ~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 152 (536)
T 3ni2_A 82 PSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVD---------SA 152 (536)
T ss_dssp CSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESS---------CC
T ss_pred CCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEec---------CC
Confidence 9999999999999999999999999999999999999999999999987766554331 111222222 12
Q ss_pred CcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh--ccCCCCcEEEech
Q 013780 165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE--LVGELDHVVLCVL 242 (436)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~ 242 (436)
..+...+.++..... ...+.....++++++|+|||||||.||+|+++|+++...+........ +....++++++.+
T Consensus 153 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~ 230 (536)
T 3ni2_A 153 PDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVL 230 (536)
T ss_dssp CTTCEETHHHHTSCG--GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECS
T ss_pred CCCccCHHHHhhccc--cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEec
Confidence 223445555554433 233444567899999999999999999999999999887654332111 1122339999999
Q ss_pred hHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCc
Q 013780 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322 (436)
Q Consensus 243 p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~ 322 (436)
|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||++++
T Consensus 231 p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~ 310 (536)
T 3ni2_A 231 PMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLG 310 (536)
T ss_dssp CTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCC
T ss_pred ChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCC
Confidence 99999999767899999999999999999999999999999999999999999999988777778999999999999999
Q ss_pred HHHHHHHHhhCCCCeeeeccccccccCCcccccC---CCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEec
Q 013780 323 KELMEDCQKNIPGATIFQVGYGMTETCAPISLEN---PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 399 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~---~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g 399 (436)
+++.+++++.|+++++++ .||+||++.+++... ......+++++|+|+++++++|+|++++++++.|+.|||+|+|
T Consensus 311 ~~~~~~~~~~~~~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g 389 (536)
T 3ni2_A 311 KELEDTVRAKFPQARLGQ-GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRG 389 (536)
T ss_dssp HHHHHHHHHHCTTSEEEE-EEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEES
T ss_pred HHHHHHHHHHCCCCCccc-cccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeC
Confidence 999999999997799999 999999987655431 1222457789999999999999998899999999999999999
Q ss_pred CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780 400 PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 400 ~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
++++.| ||++|+.|.+.| ..++||+|||+|+
T Consensus 390 ~~v~~G--Y~~~p~~t~~~~---~~~g~~~TGDl~~ 420 (536)
T 3ni2_A 390 DQIMKG--YLNDPEATSRTI---DKEGWLHTGDIGY 420 (536)
T ss_dssp TTSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred cccchh--hcCChhHHHhhc---cCCCceEcccEEE
Confidence 999999 999999999987 3578999999874
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.1e-62 Score=488.66 Aligned_cols=411 Identities=25% Similarity=0.343 Sum_probs=337.4
Q ss_pred CCCCCcceeecCCCCCcCCCCCCCchHH-HHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 013780 4 SGYGRDGIYRSLRPPLVLPSDPSFSMVH-FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVV 82 (436)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ti~~-~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V 82 (436)
...+...++++..+....|.. +|+.+ +|.++++++ +++|+++...++.+||+||.++++++|+.|++.|+++||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~p~~--~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 80 (548)
T 2d1s_A 4 MENDENIVVGPKPFYPIEEGS--AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRI 80 (548)
T ss_dssp ---CTTSEECCCCSSCCCSSC--HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEE
T ss_pred CCCCcceEecCCCCCCCCCCc--CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 344566788877665555543 78999 899999999 99999985447899999999999999999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccc
Q 013780 83 LIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVS 157 (436)
Q Consensus 83 ~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 157 (436)
+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...+.+.... ...++.. +..
T Consensus 81 ~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 157 (548)
T 2d1s_A 81 ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVIL-DSK-- 157 (548)
T ss_dssp EEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEET-TCS--
T ss_pred EEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEe-CCc--
Confidence 99999999999999999999999999999999999999999999999999987766554321 1222222 210
Q ss_pred cccccccCcccchhhHHhhhcCCCCCCCCCCC------CCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh-c
Q 013780 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSV------KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-L 230 (436)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~ 230 (436)
....+...++++...... ........ .++++++|+|||||||.||+|++||+++..+......... .
T Consensus 158 -----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~ 231 (548)
T 2d1s_A 158 -----VDYRGYQCLDTFIKRNTP-PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231 (548)
T ss_dssp -----SCBTTBCBHHHHHHHTSC-TTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSC
T ss_pred -----ccccccccHHHHHhcCcc-ccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhcc
Confidence 001123346666554321 10111111 2389999999999999999999999999887665544311 1
Q ss_pred cCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCc
Q 013780 231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS 310 (436)
Q Consensus 231 ~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~ 310 (436)
.-..++++++.+|++|.+++...++.++ .|+++++.+.+++..+++.++++++|+++++|+++..|.+.......++++
T Consensus 232 ~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 310 (548)
T 2d1s_A 232 QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSN 310 (548)
T ss_dssp CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTT
T ss_pred CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccc
Confidence 1123399999999999999975577788 999999999999999999999999999999999999999887666668899
Q ss_pred ceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCC
Q 013780 311 LKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN 390 (436)
Q Consensus 311 lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g 390 (436)
||.+++||+++++++.+++++.|++.++++ .||+||++.+++..... ..+.+++|+|+|+++++|+|+++++++++|
T Consensus 311 lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g 387 (548)
T 2d1s_A 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQ-GYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGPN 387 (548)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHTTCSCCEE-EEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCTT
T ss_pred eeEEEEcCccCCHHHHHHHHHHcCCCceee-ccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCCCC
Confidence 999999999999999999999997789999 99999998776664333 457789999999999999998799999999
Q ss_pred CceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780 391 QLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 391 ~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
+.|||+++|++++.| ||++|+.|.+.|. .++||+|||+|+
T Consensus 388 ~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~---~~g~~~TGDl~~ 427 (548)
T 2d1s_A 388 RRGEVCVKGPMLMKG--YVNNPEATKELID---EEGWLHTGDIGY 427 (548)
T ss_dssp CCEEEEEESTTSCSE--ETTCHHHHHHHBC---TTSCEEEEEEEE
T ss_pred CCeEEEECCHHHhhh--hcCChHHhhhccc---CCcEEEccCEEE
Confidence 999999999999999 9999999999882 578999999874
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.2e-62 Score=490.38 Aligned_cols=408 Identities=26% Similarity=0.382 Sum_probs=334.7
Q ss_pred CcceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEE---eCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 013780 8 RDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84 (436)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l 84 (436)
...++.++.+....+. .|+.++|.++++++|+++|++ +...++++||+||.++++++|+.|+++|+++||+|+|
T Consensus 4 ~~~~~~~~~~~~~~~~---~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 4 AKNIKKGPAPFYPLED---GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp GGGSEECCCCSSCCCC---SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred ccceeeCCCCCCCccc---CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4456666655544443 799999999999999999975 5445689999999999999999999999999999999
Q ss_pred EcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccc
Q 013780 85 FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSS 159 (436)
Q Consensus 85 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 159 (436)
+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+++...+.+.... ...+++....
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 155 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK----- 155 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS-----
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC-----
Confidence 999999999999999999999999999999999999999999999999988766554331 2233332221
Q ss_pred cccccCcccchhhHHhhhcCCCC----CCCC-CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh-ccCC
Q 013780 160 GLISRSSKIVSFHDLIELSGSVT----DIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGE 233 (436)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~ 233 (436)
....+...+.++........ ...+ ....++++++|+|||||||.||+|+++|+++..+......... ....
T Consensus 156 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~ 232 (550)
T 3rix_A 156 ---TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII 232 (550)
T ss_dssp ---SCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCC
T ss_pred ---ccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCC
Confidence 12233455666655433211 1111 2224578999999999999999999999999887655433321 1122
Q ss_pred CCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceE
Q 013780 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKL 313 (436)
Q Consensus 234 ~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~ 313 (436)
.++++++.+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..|++.......++++||.
T Consensus 233 ~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~ 311 (550)
T 3rix_A 233 PDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHE 311 (550)
T ss_dssp TTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCE
T ss_pred CCcEEEEechHHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccE
Confidence 349999999999999986 6788899999999999999999999999999999999999999999988777778999999
Q ss_pred EEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCce
Q 013780 314 VGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG 393 (436)
Q Consensus 314 i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~G 393 (436)
+++||+++++++.+++++.|+...+++ .||+||+++.++..... ..+.+++|+|+|+++++|+|+++++++++|+.|
T Consensus 312 i~~gG~~l~~~~~~~~~~~~~~~~v~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~G 388 (550)
T 3rix_A 312 IASGGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRG 388 (550)
T ss_dssp EEECSSCCCHHHHHHHHHHTTCSCCEE-EEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTTCCE
T ss_pred EEEecCCCCHHHHHHHHHHcCCCcccc-ccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCCCCe
Confidence 999999999999999999998455888 99999999877766554 567899999999999999998889999999999
Q ss_pred EEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780 394 EIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 394 el~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
||+|+|++++.| ||++|+.|.+.| ..++||+|||+|+
T Consensus 389 El~v~g~~v~~G--Y~~~~~~t~~~~---~~~g~~~TGDl~~ 425 (550)
T 3rix_A 389 ELCVRGPMIMSG--YVNNPEATNALI---DKDGWLHSGDIAY 425 (550)
T ss_dssp EEEEESTTSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred EEEEeCCCcchh--hcCChhhhhhhc---CCCCCeecCcEEE
Confidence 999999999999 999999999987 3578999999874
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.4e-61 Score=484.46 Aligned_cols=387 Identities=27% Similarity=0.439 Sum_probs=330.5
Q ss_pred CCchHHHHhhhcccCCCceEEEeCCCC------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013780 26 SFSMVHFLFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (436)
Q Consensus 26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~ 99 (436)
++|+.++|.++++++|+++|+++.+.+ +++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 97 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYAL 97 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 489999999999999999999987422 88999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCccccccccccCcccchhhHHh
Q 013780 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175 (436)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (436)
+++|++++|++|.++.+++.+++++++++++|+++...+.+.... ...+++.. .....+.++.
T Consensus 98 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 164 (549)
T 3g7s_A 98 WRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVG-------------GEVNSLSEVM 164 (549)
T ss_dssp HHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEET-------------CSSSCHHHHH
T ss_pred HHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeC-------------CCCcCHHHHH
Confidence 999999999999999999999999999999999988766554432 22222221 1234566666
Q ss_pred hhcCCCCCCCCCCCCC-CCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHH
Q 013780 176 ELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 254 (436)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~ 254 (436)
.... .........+ +++++|+|||||||.||+|+++|+++..++........+... +++++.+|++|.+++. .+
T Consensus 165 ~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~~~~~p~~~~~~~~-~~ 239 (549)
T 3g7s_A 165 DSGS--EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHM--DTIVGCMPMFHSAEFG-LV 239 (549)
T ss_dssp HHSC--SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTT--CEEECCSCTTSHHHHH-HH
T ss_pred hcCc--cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCC--CEEEEeCcHHHHHHHH-HH
Confidence 5544 2223333334 899999999999999999999999999998877666655443 9999999999999997 48
Q ss_pred HhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCc--cCCCcceEEEecCCCCcHHHHHHHHhh
Q 013780 255 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKN 332 (436)
Q Consensus 255 ~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~lr~i~~gg~~l~~~~~~~~~~~ 332 (436)
+.++..|+++++.+.+++..+++.++++++|+++++|+++..|.+...... .++++||.+++||+++++++.+++.+.
T Consensus 240 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~ 319 (549)
T 3g7s_A 240 NLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKL 319 (549)
T ss_dssp TTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999988765444 678999999999999999999999998
Q ss_pred ----CC--CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCc
Q 013780 333 ----IP--GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI 406 (436)
Q Consensus 333 ----~~--~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~ 406 (436)
++ ++++++ .||+||++.+++...... ..+..++|+|+++++++|+|+++++++++|+.|||+|+|++++.|
T Consensus 320 ~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G- 396 (549)
T 3g7s_A 320 AAEKCNNPRLRHNQ-IWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG- 396 (549)
T ss_dssp HHHHSSCTTCEEEE-EEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSE-
T ss_pred HHhhcCCccccccc-eEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhh-
Confidence 54 388999 999999988777655432 357789999999999999998899999999999999999999999
Q ss_pred cccCChhhhhhhccccccCC--eeecCCCCC
Q 013780 407 VYINFFVFTLFLWGCEHTDS--FIRGKDQQT 435 (436)
Q Consensus 407 ~Y~~~~~~~~~~~~~~~~~~--~~~tgD~~~ 435 (436)
||++|+.|.+.|. .+.+| ||+|||+|+
T Consensus 397 -Y~~~~~~t~~~f~-~~~~g~~~~~TGDl~~ 425 (549)
T 3g7s_A 397 -YWKREKENQECWW-YDEKGRKFFRTGDVGF 425 (549)
T ss_dssp -ETTCTTGGGTSEE-ECTTCCEEEEEEEEEE
T ss_pred -hCCChhhhhhhhh-ccCCCCceEccCcEEE
Confidence 9999999999872 23355 999999874
No 5
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=6.8e-62 Score=479.89 Aligned_cols=394 Identities=19% Similarity=0.187 Sum_probs=311.8
Q ss_pred CCCCCCCchHHHHhhhcccCCCceEEEeCC-----CC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH
Q 013780 21 LPSDPSFSMVHFLFRNSASYSSKLALIDAD-----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP 93 (436)
Q Consensus 21 ~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~ 93 (436)
...-+++|+.++|.++++++|+++|+++.+ ++ +++||+||.++++++|+.|.++|+ +||+|+|+++|+++++
T Consensus 18 ~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~ 96 (480)
T 3t5a_A 18 GSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV 96 (480)
T ss_dssp ------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH
T ss_pred cCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH
Confidence 333445899999999999999999998763 22 789999999999999999999996 9999999999999999
Q ss_pred HHHHHHHHhCCeEeecCC---CCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccch
Q 013780 94 ICFLGVIAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS 170 (436)
Q Consensus 94 ~~~lA~~~~G~~~v~l~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (436)
+++|||+++|+++||+++ .++.+++.+++++++++++|++....+.+.......... ....+..
T Consensus 97 ~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 163 (480)
T 3t5a_A 97 VAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE-------------SPPSIIE 163 (480)
T ss_dssp HHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------------------CCEEEE
T ss_pred HHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc-------------cccceeE
Confidence 999999999999999999 778899999999999999999998877666543211100 0000111
Q ss_pred hhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC----CCCcEEEechhHHH
Q 013780 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG----ELDHVVLCVLPMFH 246 (436)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~ 246 (436)
++....... .........++++++|+|||||||.||+|++||+++..++........... ...+++++.+|++|
T Consensus 164 ~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 241 (480)
T 3t5a_A 164 VDLLDLDAP--NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH 241 (480)
T ss_dssp GGGSCTTCC-----CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTS
T ss_pred ecccccccc--cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcC
Confidence 111111111 222334556789999999999999999999999999998877666655543 11499999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEcCCC----CHHHHHHHHHHhcceEEEecHHHHHHHHhc----cccCccCCCcceEEEecC
Q 013780 247 VFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN----SLVRKFDISSLKLVGSGA 318 (436)
Q Consensus 247 ~~g~~~~~~~~l~~G~~v~~~~~~----~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~----~~~~~~~l~~lr~i~~gg 318 (436)
.+|+...++.++..|+++++.++. ++..+++.++++++| +.++|+++..++.. ......++++||.+++||
T Consensus 242 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG 320 (480)
T 3t5a_A 242 DMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGS 320 (480)
T ss_dssp TTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECC
T ss_pred ccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecC
Confidence 999877789999999999999754 899999999999999 88899988887763 334556789999999999
Q ss_pred CCCcHHHHHHHHhhCC-----CCeeeeccccccccCCcccccCCCCC-----------------------ccCcCccccc
Q 013780 319 APLGKELMEDCQKNIP-----GATIFQVGYGMTETCAPISLENPLVG-----------------------VRRSGSAGTL 370 (436)
Q Consensus 319 ~~l~~~~~~~~~~~~~-----~~~i~~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~p 370 (436)
+++++++.++|++.|+ +..+++ .||+||++.+++....... ..+..++|+|
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p 399 (480)
T 3t5a_A 321 ERVQAATIKRFADRFARFNLQERVIRP-SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP 399 (480)
T ss_dssp TTCCHHHHHHHHHHSGGGTCCGGGEEE-EEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECC
T ss_pred CcCCHHHHHHHHHHHhhcCCChhhccc-cccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcc
Confidence 9999999999999984 457999 9999999987776543311 1345689999
Q ss_pred cCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc--------ccccCCeeecCCCCC
Q 013780 371 VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--------CEHTDSFIRGKDQQT 435 (436)
Q Consensus 371 ~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~--------~~~~~~~~~tgD~~~ 435 (436)
++ ++++|+|++++++++.|++|||+|+|++++.| ||++|+.|.+.|. -...++||+|||+|+
T Consensus 400 ~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~ 469 (480)
T 3t5a_A 400 RS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANG--YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGF 469 (480)
T ss_dssp SS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCC--BTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEE
T ss_pred cC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccc--cccCcchhHHHHhhhhccccCCCCCCCeeeccceee
Confidence 99 99999998779999999999999999999999 9999999999982 112467999999874
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=7.6e-61 Score=475.56 Aligned_cols=380 Identities=23% Similarity=0.327 Sum_probs=323.5
Q ss_pred CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
..|+.++|.++++++|+++|+++.+.+.++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 94 (517)
T 3r44_A 15 MKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAV 94 (517)
T ss_dssp GGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred ccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence 38999999999999999999998844459999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC-----CcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (436)
Q Consensus 106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (436)
++|++|.++.+++.+++++++++++|++......+..... ..++.. .....+.+......
T Consensus 95 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~- 159 (517)
T 3r44_A 95 AVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW--------------IGADSLAERLRSAA- 159 (517)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEE--------------EEHHHHHHHHHHCC-
T ss_pred EEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEc--------------cCcccHHHHhhccC-
Confidence 9999999999999999999999999999877665543310 000000 00123444444333
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (436)
Q Consensus 181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 260 (436)
.........++++++|+|||||||.||+|+++|+++..++......+.+... +++++.+|++|.+++...++..+ .
T Consensus 160 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~~~~~~~~~~~-~ 235 (517)
T 3r44_A 160 -ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYR--DRLLLPLPMFHVAALTTVIFSAM-R 235 (517)
T ss_dssp -CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTT--CEEEECSCTTSHHHHHHHHHHHH-H
T ss_pred -cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCC--CEEEEeCchHHHHHHHHHHHHHh-c
Confidence 3334455678999999999999999999999999999988776666655333 99999999999999974455555 9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340 (436)
Q Consensus 261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~ 340 (436)
|+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.+++.+. ++++++
T Consensus 236 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~ 313 (517)
T 3r44_A 236 GVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQ 313 (517)
T ss_dssp TCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEE
T ss_pred CeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEE
Confidence 999999999999999999999999999999999999998877667788999999999999999999999988 599999
Q ss_pred ccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780 341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 420 (436)
Q Consensus 341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~ 420 (436)
.||+||+++.++.........+.+++|+|+++++++|+| +++.+++.| .|||+|+|+.++.| ||++|+.|.+.|
T Consensus 314 -~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~G--Y~~~p~~t~~~f- 387 (517)
T 3r44_A 314 -GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKE--YWNRPEATRDAF- 387 (517)
T ss_dssp -EEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSE--ETTCHHHHHHTE-
T ss_pred -eecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhh--hCCChhhhHhhh-
Confidence 999999988776654443356788999999999999999 589999989 89999999999999 999999999999
Q ss_pred ccccCCeeecCCCCC
Q 013780 421 CEHTDSFIRGKDQQT 435 (436)
Q Consensus 421 ~~~~~~~~~tgD~~~ 435 (436)
.++||+|||+|+
T Consensus 388 ---~~g~~~TGDl~~ 399 (517)
T 3r44_A 388 ---DNGWFRTGDIGE 399 (517)
T ss_dssp ---ETTEEEEEEEEE
T ss_pred ---cCCCEecceeEE
Confidence 588999999874
No 7
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.6e-60 Score=476.05 Aligned_cols=384 Identities=22% Similarity=0.292 Sum_probs=321.7
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 106 (436)
.|+.++|.++++++|+++|+++. ++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 78999999999999999999987 7999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEccchH--------HHHhhcC--CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780 107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (436)
Q Consensus 107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (436)
+|+++.++.+++.+++++++++++|++.... ..+.... ...++.... ......+.++..
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 176 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNH-----------QATDFGLLDWIE 176 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETC-----------CTTSEEHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecC-----------Cccccchhhhhh
Confidence 9999999999999999999999999987542 2222221 122222211 001112333333
Q ss_pred hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH-HHH
Q 013780 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY 255 (436)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~ 255 (436)
.... .........++++++|+|||||||.||+|+++|+++..++........+... +++++.+|++|.+++.. .++
T Consensus 177 ~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~h~~~~~~~~~~ 253 (544)
T 3o83_A 177 TPAE-TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSN--TRLLCALPAPHNFMLSSPGAL 253 (544)
T ss_dssp SCCS-SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHHSSHHH
T ss_pred cccc-cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCC--CeEEEecCcceEeecchHHHH
Confidence 3221 1112244568899999999999999999999999999998877666655443 99999999999998864 488
Q ss_pred hhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCC
Q 013780 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (436)
Q Consensus 256 ~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~ 335 (436)
.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++++.+++++.++
T Consensus 254 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~- 332 (544)
T 3o83_A 254 GVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN- 332 (544)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC-
T ss_pred HHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC-
Confidence 8999999999999999999999999999999999999999999887766667899999999999999999999999996
Q ss_pred CeeeeccccccccCCcccccCCCCCccCcCcccccc-CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhh
Q 013780 336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVF 414 (436)
Q Consensus 336 ~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~ 414 (436)
+++++ .||+||++..+...... ......++|+|+ ++++++|+| ++++++++|++|||+++|++++.| ||++|+.
T Consensus 333 ~~~~~-~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~ 407 (544)
T 3o83_A 333 CKLQQ-VFGMAEGLVNYTRLDDS-DEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCG--YYQSPEH 407 (544)
T ss_dssp SEEEE-EEECTTSCEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSC--CTTCHHH
T ss_pred CcEEe-eeccccccceeecCCCc-hhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchh--hcCChhh
Confidence 99999 99999987544432221 134567899996 899999999 699999999999999999999999 9999999
Q ss_pred hhhhccccccCCeeecCCCCC
Q 013780 415 TLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 415 ~~~~~~~~~~~~~~~tgD~~~ 435 (436)
|.+.|. .++||+|||+|+
T Consensus 408 t~~~f~---~~g~~~TGDlg~ 425 (544)
T 3o83_A 408 NSQVFD---EDNYYYSGDLVQ 425 (544)
T ss_dssp HHHHBC---TTCCEEEEEEEE
T ss_pred hhhhCC---CCCCeEcCCEEE
Confidence 999883 578999999873
No 8
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.3e-60 Score=473.92 Aligned_cols=380 Identities=18% Similarity=0.233 Sum_probs=320.5
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 106 (436)
||+.+.|.++++++|+++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 78 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY 78 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999997 6899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (436)
Q Consensus 107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (436)
+|+++.++.+++.++++.++++++|++...... .....+... ..+.+.............
T Consensus 79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 138 (512)
T 3fce_A 79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT----DLPVRIVSE----------------DNLKDIFFTHKGNTPNPE 138 (512)
T ss_dssp EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS----CCSSEEEET----------------HHHHHHHHHTTTCCCCGG
T ss_pred EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc----ccccceech----------------hhhhhhcccccccCCCcc
Confidence 999999999999999999999999997543110 011111110 122222222221122233
Q ss_pred CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (436)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~ 266 (436)
....++++++|+|||||||.||+|+++|+++.+.+........+... +++++.+|++|..++. .++.++..|+++++
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~ 215 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTG--QVFLNQAPFSFDLSVM-DIYPSLVTGGTLWA 215 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSS--CEEEECSCTTSGGGHH-HHHHHHHTTCEEEE
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCC--CEEEEeCCccHhHHHH-HHHHHHhCCCEEEE
Confidence 45578899999999999999999999999999988776666555333 9999999999999985 78999999999999
Q ss_pred cCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 267 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
.+. +++..+++.++++++|++.++|+++..++........++++||.+++||+++++++.+++.+.|+++++++ .|
T Consensus 216 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~-~Y 294 (512)
T 3fce_A 216 IDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN-TY 294 (512)
T ss_dssp CCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE-EE
T ss_pred CCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe-Cc
Confidence 976 68999999999999999999999999999888777778999999999999999999999999997799999 99
Q ss_pred cccccCCcccccCCCCC---ccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780 344 GMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 420 (436)
Q Consensus 344 G~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~ 420 (436)
|+||+++.++....... ..+..++|+|+++++++|+| ++|+++++|+.|||+++|++++.| ||++|+.+.+.|.
T Consensus 295 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~ 371 (512)
T 3fce_A 295 GPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVG--YLGSPELTEKAFT 371 (512)
T ss_dssp CCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSC--BTTCHHHHHHHEE
T ss_pred ccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChh--hcCCchhhhhccc
Confidence 99999887665432211 23567899999999999999 599999999999999999999999 9999999999985
Q ss_pred ccccCCeeecCCCCC
Q 013780 421 CEHTDSFIRGKDQQT 435 (436)
Q Consensus 421 ~~~~~~~~~tgD~~~ 435 (436)
..+.++||+|||+|+
T Consensus 372 ~~~~~~~~~TGDlg~ 386 (512)
T 3fce_A 372 MIDGERAYKTGDAGY 386 (512)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred cCCCCEEEeCCceEE
Confidence 556678999999874
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.1e-60 Score=472.93 Aligned_cols=378 Identities=26% Similarity=0.352 Sum_probs=316.8
Q ss_pred HHHhhhcccCCCceEEEeC-CCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeec
Q 013780 31 HFLFRNSASYSSKLALIDA-DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA 109 (436)
Q Consensus 31 ~~l~~~~~~~p~~~a~~~~-~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l 109 (436)
++|.+.++++|+++++... ..++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 5678888999999988742 236899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC---CCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (436)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (436)
+|.++.+++.+++++++++++|+++...+.+.... ...+..... .....+.+...... .....
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~ 149 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGP------------DGRGSLTDAAAGAS--EAFAT 149 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCT------------TSCSHHHHHHHTSC--SCCCC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecC------------CcccccchhhhcCC--CCcCc
Confidence 99999999999999999999999986544332221 111111111 00112222222222 23334
Q ss_pred CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (436)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~ 266 (436)
....++++++|+|||||||.||+|+++|+++.+++......+.+... +++++.+|++|.+|+...++.++..|+++++
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 227 (503)
T 4fuq_A 150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPD--DVLIHALPIYHTHGLFVASNVTLFARGSMIF 227 (503)
T ss_dssp CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCSSSHCCCCCCHHHHHHTTCEEEE
T ss_pred CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCC--CEEEEeCChHHHHHHHHHHHHHHHhCCEEEE
Confidence 45678999999999999999999999999999988877666655443 9999999999999986567889999999999
Q ss_pred cCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccccc
Q 013780 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT 346 (436)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~t 346 (436)
.+.+++..+++.++ ++|+++++|+++..|++........++++|.+++||+++++++.++|.+.++ .++++ .||+|
T Consensus 228 ~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~-~YG~T 303 (503)
T 4fuq_A 228 LPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLE-RYGMT 303 (503)
T ss_dssp CSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEE-CCEET
T ss_pred cCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccc-eEccc
Confidence 99999999999998 8999999999999999988777778899999999999999999999999997 89999 99999
Q ss_pred ccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCC
Q 013780 347 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS 426 (436)
Q Consensus 347 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~ 426 (436)
|++..++.... ....++++|+|+++++++|+|+++++++++|+.|||+|+|++++.| ||++|+.|.+.|. .++
T Consensus 304 E~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~---~~g 376 (503)
T 4fuq_A 304 ETNMNTSNPYD--GDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKG--YWRMPEKTKSEFR---DDG 376 (503)
T ss_dssp TTEECBCCCSS--SCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCC--BTTCHHHHHHTBC---TTS
T ss_pred ccCcccccCCC--CCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhh--hcCChhhhHhhhC---CCC
Confidence 99876543322 2567889999999999999998899999999999999999999999 9999999999883 578
Q ss_pred eeecCCCCC
Q 013780 427 FIRGKDQQT 435 (436)
Q Consensus 427 ~~~tgD~~~ 435 (436)
||+|||+|+
T Consensus 377 ~~~TGDl~~ 385 (503)
T 4fuq_A 377 FFITGDLGK 385 (503)
T ss_dssp CEEEEEEEE
T ss_pred CeEcceeEE
Confidence 999999874
No 10
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.7e-60 Score=472.94 Aligned_cols=380 Identities=23% Similarity=0.289 Sum_probs=317.4
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 106 (436)
.|+.++|.++++++|+++|+++. ++.+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 78999999999999999999987 6899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEccchH--------HHHhhc-C-CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780 107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDL-N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (436)
Q Consensus 107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (436)
+|++|.++.+++.++++.++++++|+++... ..+... . .+.+++..+. . .+.++..
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~ 168 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-----------E---EFLPLED 168 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-----------T---TSEEGGG
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc-----------c---chhhhhh
Confidence 9999999999999999999999999987531 122111 1 2222221110 0 1222221
Q ss_pred hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH-HHH
Q 013780 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY 255 (436)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~ 255 (436)
... .........++++++|+|||||||.||+|+++|+++..++........+.. ++++++.+|++|.+++.. .++
T Consensus 169 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~~~~~~~~~ 244 (539)
T 1mdb_A 169 LHT--EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVL 244 (539)
T ss_dssp CCC--CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCT--TCEEEECSCTTSHHHHHSSHHH
T ss_pred ccc--cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCC--CCEEEEeecccccchhhHHHHH
Confidence 111 111223456789999999999999999999999999988777666555533 399999999999999875 588
Q ss_pred hhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCC
Q 013780 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (436)
Q Consensus 256 ~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~ 335 (436)
.+|..|+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.+++++.++
T Consensus 245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~- 323 (539)
T 1mdb_A 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG- 323 (539)
T ss_dssp HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC-
Confidence 9999999999999999999999999999999999999999998876666668899999999999999999999999997
Q ss_pred CeeeeccccccccCCcccccCCCCCccCcCccccccCC-cEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhh
Q 013780 336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAG-VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVF 414 (436)
Q Consensus 336 ~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~-~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~ 414 (436)
+++++ .||+||++..+. ..........+++|+|+++ .+++|+| ++++++++|+.|||+|+|++++.| ||++|+.
T Consensus 324 ~~~~~-~YG~TE~~~~~~-~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~ 398 (539)
T 1mdb_A 324 CTLQQ-VFGMAEGLVNYT-RLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRG--YYKAEEH 398 (539)
T ss_dssp SEEEE-EEECTTSCEEEC-CTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSS--CTTCHHH
T ss_pred CcEEE-EEcCCCCccccc-CCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchh--hcCChhh
Confidence 99999 999999653322 2222112356789999976 5899999 589999999999999999999999 9999999
Q ss_pred hhhhccccccCCeeecCCCCC
Q 013780 415 TLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 415 ~~~~~~~~~~~~~~~tgD~~~ 435 (436)
|.+.|. .++||+|||+|+
T Consensus 399 t~~~f~---~~g~~~TGDlg~ 416 (539)
T 1mdb_A 399 NAASFT---EDGFYRTGDIVR 416 (539)
T ss_dssp HHHHBC---TTSCEEEEEEEE
T ss_pred hhhhcc---CCCCeecCceEE
Confidence 999883 578999999874
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=7.2e-60 Score=473.91 Aligned_cols=388 Identities=22% Similarity=0.274 Sum_probs=322.1
Q ss_pred CCCchH-HHHhhhcccCCCceEEEeCC---CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013780 25 PSFSMV-HFLFRNSASYSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI 100 (436)
Q Consensus 25 ~~~ti~-~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~ 100 (436)
.++|+. ++|.++++++|+++|+++.+ .++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~ 132 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLH 132 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 347787 99999999999999998632 23789999999999999999999999999999999999999999999999
Q ss_pred HhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchH--HHHhhc----C-C-CcEEeccCCccccccccccCcccchhh
Q 013780 101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKDL----N-L-PAVLLGSKDKVSSSGLISRSSKIVSFH 172 (436)
Q Consensus 101 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (436)
++|++++|+++.++.+++.+++++++++++|++.+.. ..+... . . ..++.... ....++..+.
T Consensus 133 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 203 (580)
T 3etc_A 133 KLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGG---------DVLEGWIDFR 203 (580)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESS---------SCCTTCEEHH
T ss_pred hCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCC---------ccccccccHH
Confidence 9999999999999999999999999999999987643 333221 1 1 22222211 1234556677
Q ss_pred HHhhhcCCCCCCCC--CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHH
Q 013780 173 DLIELSGSVTDIPD--VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250 (436)
Q Consensus 173 ~~~~~~~~~~~~~~--~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~ 250 (436)
+.+.........+. ....++++++|+|||||||.||+|.++|.++............+ ...+++++..|++|..++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 281 (580)
T 3etc_A 204 KELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNV--EDDGLHYTVADSGWGKCV 281 (580)
T ss_dssp HHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCC--CTTCEEEECCCTTSTHHH
T ss_pred HHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCC--CCCceEEEeCChHHHHHH
Confidence 76665442111111 34678999999999999999999999999888765543333333 233899999999998888
Q ss_pred HHHHHhhccCCcEEEEc--CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHH
Q 013780 251 SVILYDQLQKGNCVVSM--GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328 (436)
Q Consensus 251 ~~~~~~~l~~G~~v~~~--~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~ 328 (436)
+..++.++..|+++++. ..+++..+++.++++++|+++++|++++.|.+.. ....++++||.+++||+++++++.++
T Consensus 282 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~l~~~~~~~ 360 (580)
T 3etc_A 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNR 360 (580)
T ss_dssp HHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccCCCCHHHHHH
Confidence 76688899999999987 5789999999999999999999999999998863 34557899999999999999999999
Q ss_pred HHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEec-----CCcc
Q 013780 329 CQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG-----PNVT 403 (436)
Q Consensus 329 ~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g-----~~~~ 403 (436)
|++.++ +++++ .||+||++..++..+.. ..+++++|+|+|+++++|+|+ +|+++++|+.|||+|+| +.++
T Consensus 361 ~~~~~g-~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~ 435 (580)
T 3etc_A 361 FLEFTG-IKLME-GFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLF 435 (580)
T ss_dssp HHHHHS-CCCEE-EECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEECTTCCCTTCC
T ss_pred HHHHhC-CeEec-ccccccccceeecCCCC--CCCCCccccCCCCCEEEEECC-CCCCCCCCCceEEEEecCCCCCCeee
Confidence 999887 99999 99999998766655443 567899999999999999995 79999999999999997 7899
Q ss_pred cCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780 404 PGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 404 ~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
.| ||++|+.|.+.| .+|||+|||+|+
T Consensus 436 ~g--Y~~~p~~t~~~f----~~gwy~TGDlg~ 461 (580)
T 3etc_A 436 VH--YGKDPERTEETW----HDGYYHTGDMAW 461 (580)
T ss_dssp CE--ETTCHHHHHHHE----ETTEEEEEEEEE
T ss_pred cc--ccCCHhHHHhhc----CCCEEecCcEEE
Confidence 99 999999999999 588999999874
No 12
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.2e-60 Score=502.89 Aligned_cols=415 Identities=36% Similarity=0.569 Sum_probs=343.1
Q ss_pred cceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Q 013780 9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88 (436)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n 88 (436)
..++++..+...+|.. +|+.++|.++++++|+++|+++...++.+||+||.++++++|+.|+++|+++||+|+|+++|
T Consensus 45 ~~~~~~~~~~~~~p~~--~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n 122 (979)
T 3tsy_A 45 DVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPN 122 (979)
T ss_dssp CCCBCCSSCCCCCCTT--SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSS
T ss_pred CceeecCCCCCCCCCC--CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCC
Confidence 4456666666666655 89999999999999999999998767899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC--CCcEEeccCCccccccccccCc
Q 013780 89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSS 166 (436)
Q Consensus 89 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 166 (436)
++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+.... ....++..+... ......
T Consensus 123 s~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 198 (979)
T 3tsy_A 123 CPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNE----SVPIPE 198 (979)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCT----TSCCCT
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcc----cccCCc
Confidence 99999999999999999999999999999999999999999999987655443321 122222222110 001112
Q ss_pred ccchhhHHhhhcCCC-CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh--ccCCCCcEEEechh
Q 013780 167 KIVSFHDLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE--LVGELDHVVLCVLP 243 (436)
Q Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~p 243 (436)
+...+.++....... .........++++++|+|||||||.||+|+++|+++...+........ +.-..++++++.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 278 (979)
T 3tsy_A 199 GCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLP 278 (979)
T ss_dssp TEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSC
T ss_pred ccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECc
Confidence 334444444332210 122334567899999999999999999999999999887654332211 11223499999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcH
Q 013780 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323 (436)
Q Consensus 244 ~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~ 323 (436)
++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++
T Consensus 279 ~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~ 358 (979)
T 3tsy_A 279 MFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGK 358 (979)
T ss_dssp SSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCS
T ss_pred hHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCH
Confidence 99999997678899999999999999999999999999999999999999999999888777789999999999999999
Q ss_pred HHHHHHHhhCCCCeeeeccccccccCCcccccC---CCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecC
Q 013780 324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLEN---PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 400 (436)
Q Consensus 324 ~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~---~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~ 400 (436)
++.+++++.|+++++++ .||+||++.+++... ......+.+++|+|+++++++|+|+++++++++|+.|||+|+|+
T Consensus 359 ~~~~~~~~~~~~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~ 437 (979)
T 3tsy_A 359 ELEDAVNAKFPNAKLGQ-GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGH 437 (979)
T ss_dssp SHHHHHHHHCTTCEEEE-CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEEST
T ss_pred HHHHHHHHHCCCCeEEe-eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECC
Confidence 99999999998799999 999999987655431 12224567899999999999999988899999999999999999
Q ss_pred CcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780 401 NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 401 ~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
.++.| ||++|+.|.+.| ..++||+|||+|+
T Consensus 438 ~v~~G--Y~~~p~~t~~~f---~~~g~~~TGDl~~ 467 (979)
T 3tsy_A 438 QIMKG--YLNNPAATAETI---DKDGWLHTGDIGL 467 (979)
T ss_dssp TSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred Ccccc--ccCChhhhhhhc---cCCCcEEcCCEEE
Confidence 99999 999999999987 3678999999874
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.2e-59 Score=464.06 Aligned_cols=375 Identities=22% Similarity=0.289 Sum_probs=311.8
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 106 (436)
+|+.++|.++++++|+++|+++...++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999987556899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEE--ccchHHHH-hhcCCCcEEeccCCccccccccccCcccchhhHHhhhcC---C
Q 013780 107 STANPVYTVSELSKQVKDSNPKLVIT--VPELWDKV-KDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---S 180 (436)
Q Consensus 107 v~l~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 180 (436)
+|++|.++.+++.+++++++++++++ +....+.+ .... ...++ .++++..... .
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~ 141 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARII-------------------FLGDLVRDGEPYSY 141 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC-CCEEE-------------------EGGGTEETTEECCC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc-cceeE-------------------EecchhhcCccccc
Confidence 99999999999999999999999999 76655554 3321 11111 1222221110 0
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (436)
Q Consensus 181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 260 (436)
..........++++++|+|||||||.||+|+++|+++...+........+.....+++++.+|++|.+++...++.++..
T Consensus 142 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~ 221 (504)
T 1t5h_X 142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALAL 221 (504)
T ss_dssp SCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHT
T ss_pred CCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHc
Confidence 01111134567899999999999999999999999999887766555544223449999999999999986578899999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCee
Q 013780 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338 (436)
Q Consensus 261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i 338 (436)
|+++++.+.+++..+++.++++++|+++++|+++..|.+... ....++++||.+++||+++++++.++|++.++ ..+
T Consensus 222 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~ 300 (504)
T 1t5h_X 222 DGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEK 300 (504)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC-SEE
T ss_pred CceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC-cce
Confidence 999999999999999999999999999999999999988652 24457899999999999999999999999997 899
Q ss_pred eeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCC---ccCCCCCceEEEEe-cCCcccCccccCChhh
Q 013780 339 FQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL---KPLPPNQLGEIWVR-GPNVTPGIVYINFFVF 414 (436)
Q Consensus 339 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~---~~~~~g~~Gel~v~-g~~~~~g~~Y~~~~~~ 414 (436)
++ .||+||++ .+.... ..+.+++|.|.++++++|+|. ++ +++++|+.|||+++ |+.++.| ||++|+.
T Consensus 301 ~~-~YG~TE~~-~~~~~~----~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~G--Y~~~~~~ 371 (504)
T 1t5h_X 301 VN-IYGTTEAM-NSLYMR----QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVG--YLNQPQA 371 (504)
T ss_dssp EE-EEEETTTE-EEEEEE----SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCC--BTTCHHH
T ss_pred ee-eecccccc-cccccc----CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeece--ecCCchh
Confidence 99 99999983 222221 345688999999999999995 55 89999999999999 9999999 9999999
Q ss_pred hhhhccccccCCeeecCCCCC
Q 013780 415 TLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 415 ~~~~~~~~~~~~~~~tgD~~~ 435 (436)
|.+.| .+|||+|||+|+
T Consensus 372 t~~~f----~~g~~~TGDlg~ 388 (504)
T 1t5h_X 372 TAEKL----QDGWYRTSDVAV 388 (504)
T ss_dssp HHHHE----ETTEEEEEEEEE
T ss_pred hhhhh----cCCccccCcEEE
Confidence 99998 578999999873
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.9e-59 Score=465.77 Aligned_cols=385 Identities=23% Similarity=0.324 Sum_probs=316.1
Q ss_pred CchHHHHhhhcccCCCceEEEeCC--CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 013780 27 FSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~ 104 (436)
.|+.++|.++++++|+++|+++.+ .++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 97 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA 97 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 789999999999999999998532 247899999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchhhHHhhhcC
Q 013780 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179 (436)
Q Consensus 105 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (436)
+++|++|.++.+++.+++++++++++|+++...+.+.... .+.++...+. ...+...++++.....
T Consensus 98 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 168 (541)
T 1v25_A 98 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK---------APEGYLAYEEALGEEA 168 (541)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC---------CCTTCEEHHHHCCSCC
T ss_pred EEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCC---------CCcccccHHHHhhccC
Confidence 9999999999999999999999999999988766554321 1222222110 0112334555543322
Q ss_pred CCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhcc
Q 013780 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259 (436)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 259 (436)
. .....++++++|+|||||||.||+|++||+++..++........+.-...|++++.+|++|.+++. .++.++.
T Consensus 169 --~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~ 242 (541)
T 1v25_A 169 --D---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPYAATL 242 (541)
T ss_dssp --C---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHHHHHH
T ss_pred --C---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHHHHHh
Confidence 1 134467899999999999999999999999998765432111112122349999999999999985 6778899
Q ss_pred CCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCee
Q 013780 260 KGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338 (436)
Q Consensus 260 ~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i 338 (436)
.|+++++.+ .+++..+++.++++++|+++++|+++..|.+.......++++||.+++||+++++++.+++ +.++ +++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g-~~~ 320 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG-VEV 320 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT-CEE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhC-Cce
Confidence 999999986 4799999999999999999999999999988766555678999999999999999999999 6675 999
Q ss_pred eeccccccccCCcccccCCCCC---------ccCcCccccccCCcEEEEEeCCCCccCCC--CCceEEEEecCCcccCcc
Q 013780 339 FQVGYGMTETCAPISLENPLVG---------VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPGIV 407 (436)
Q Consensus 339 ~~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~--g~~Gel~v~g~~~~~g~~ 407 (436)
++ .||+||++.+++....... .....++|+|+|+++++|+|+ ++++++. ++.|||+++|++++.|
T Consensus 321 ~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~G-- 396 (541)
T 1v25_A 321 RQ-GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGG-- 396 (541)
T ss_dssp EE-EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSS--
T ss_pred ee-cccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECC-CCCCCCCCCCcceEEEEeCcchhcc--
Confidence 99 9999999877665433210 124678999999999999995 7888884 3689999999999999
Q ss_pred ccCChhhhhhhccccccCCeeecCCCCC
Q 013780 408 YINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 408 Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
||++|+.|.+.|. .+|||+|||+|+
T Consensus 397 Y~~~p~~t~~~f~---~~g~~~TGDlg~ 421 (541)
T 1v25_A 397 YYGNEEATRSALT---PDGFFRTGDIAV 421 (541)
T ss_dssp CBTCHHHHHTTBC---TTSCEEEEEEEE
T ss_pred ccCChhhhhhhcc---CCCCeEcCCEEE
Confidence 9999999999882 488999999874
No 15
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.6e-59 Score=464.60 Aligned_cols=384 Identities=21% Similarity=0.328 Sum_probs=310.7
Q ss_pred Cc-hHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 27 FS-MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 27 ~t-i~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
+| +.++|.++++ +|+++|+++. +.++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 99 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVV 99 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCE
T ss_pred eeHHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCce
Confidence 55 7888888888 9999999987 689999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----C-CcEEeccCCccccccccccCcccchhhHHhhhcC
Q 013780 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179 (436)
Q Consensus 106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (436)
++|+++.++.+++.+++++++++++|+++...+.+.... . ..+++..... ........++++.....
T Consensus 100 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 172 (529)
T 2v7b_A 100 PVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE-------SEPRLAPLFEELIDAAA 172 (529)
T ss_dssp EEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-------------CCCBHHHHHHTSC
T ss_pred EEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccc-------cccccccchhhhhccCC
Confidence 999999999999999999999999999987765544321 1 2222211100 00001224555554322
Q ss_pred CCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHH-HhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhc
Q 013780 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL 258 (436)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 258 (436)
.........++++++|+|||||||.||+|+++|+++ ............+ ...+++++.+|++|.+++...++.++
T Consensus 173 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l 248 (529)
T 2v7b_A 173 --PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI--AENDVVFSAAKLFFAYGLGNGLTFPL 248 (529)
T ss_dssp --CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCC--CTTCEEEESSCTTSHHHHHHHTHHHH
T ss_pred --CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCC--CCCcEEEEeecHHHHHHHHHHHHHHH
Confidence 222233456789999999999999999999999999 4543322222222 23399999999999999976678899
Q ss_pred cCCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCe
Q 013780 259 QKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 337 (436)
Q Consensus 259 ~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~ 337 (436)
..|+++++. +.+++..+++.++++++|+++++|+++..+.+..........+||.+++||+++++++.+++++.++ ++
T Consensus 249 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g-~~ 327 (529)
T 2v7b_A 249 SVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG-CE 327 (529)
T ss_dssp HHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS-CC
T ss_pred hcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhC-Cc
Confidence 999999988 6789999999999999999999999999998875544331248999999999999999999999986 99
Q ss_pred eeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhh
Q 013780 338 IFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLF 417 (436)
Q Consensus 338 i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~ 417 (436)
+++ .||+||++++++..... ....+++|+|+++++++|+| ++|+++++|+.|||+|+|++++.| ||++|+.+.+
T Consensus 328 i~~-~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~t~~ 401 (529)
T 2v7b_A 328 ILD-GIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVM--YWNNREKSRA 401 (529)
T ss_dssp EEE-EEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCC--BTTCHHHHHH
T ss_pred eee-eEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccc--cCCChHHHHH
Confidence 999 99999997766554433 35678999999999999999 589999999999999999999999 9999999999
Q ss_pred hccccccCCeeecCCCCC
Q 013780 418 LWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 418 ~~~~~~~~~~~~tgD~~~ 435 (436)
.| .++||+|||+|+
T Consensus 402 ~f----~~~~~~TGDl~~ 415 (529)
T 2v7b_A 402 TF----LGEWIRSGDKYC 415 (529)
T ss_dssp HE----ETTEEEEEEEEE
T ss_pred hh----hcCCcccCceEE
Confidence 98 488999999863
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.1e-59 Score=463.67 Aligned_cols=378 Identities=20% Similarity=0.267 Sum_probs=319.2
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
||+.++|.++++++|+++|+++. ++++||+||.++++++|+.|.+. |+++|++|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 68999999999999999999987 79999999999999999999874 8889999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (436)
Q Consensus 106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (436)
++|+++.++.+++.+++++++++++|+++...... . ........+.++...... ....
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~-~~~~ 136 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA--V-------------------GQQIQTVSAEELLENEGG-SVSQ 136 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC--C-------------------CCSSCEEEHHHHHTSCSC-CCCG
T ss_pred EEecCCCChHHHHHHHHHhCCCCEEEecccccchh--c-------------------ccccceecHhhhhccccC-Cccc
Confidence 99999999999999999999999999975432110 0 001112234444433221 1122
Q ss_pred CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (436)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~ 265 (436)
.....++++++|+|||||||.||+|++||+++...+........+... +++++.+|++|..++. .++.++..|++++
T Consensus 137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~ 213 (511)
T 3e7w_A 137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGG--KIFLNQAPFSFDLSVM-DLYPCLQSGGTLH 213 (511)
T ss_dssp GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTT--CEEEECSCTTSTHHHH-HHHHHHHTTCEEE
T ss_pred cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCcc--ceEEEeCCccHHHHHH-HHHHHHhcCCEEE
Confidence 234567899999999999999999999999999988776666555433 9999999999999985 7899999999999
Q ss_pred EcCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780 266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG 342 (436)
Q Consensus 266 ~~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~ 342 (436)
+.+. +++..+++.++++++|++.++|+++..+++........++++|.+++||+++++++.+++++.|+++++++ .
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~-~ 292 (511)
T 3e7w_A 214 CVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFN-T 292 (511)
T ss_dssp ECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE-C
T ss_pred EcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEe-C
Confidence 9875 68999999999999999999999999999987777778899999999999999999999999997799999 9
Q ss_pred ccccccCCcccccCCCC---CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhc
Q 013780 343 YGMTETCAPISLENPLV---GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW 419 (436)
Q Consensus 343 YG~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~ 419 (436)
||+||+++.++...... ......++|+|+++++++|+|+ +|+++++|+.|||+|+|++++.| ||++|+.|.+.|
T Consensus 293 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f 369 (511)
T 3e7w_A 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEIVIAGPSVSRG--YLGEPELTEKAF 369 (511)
T ss_dssp CCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCC--BTTCHHHHHHHE
T ss_pred cccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECC-CCCCCCCCCceEEEEecCccChh--hCCCcccchhhh
Confidence 99999987766432221 1235567999999999999995 79999999999999999999999 999999999988
Q ss_pred cccccCCeeecCCCCC
Q 013780 420 GCEHTDSFIRGKDQQT 435 (436)
Q Consensus 420 ~~~~~~~~~~tgD~~~ 435 (436)
...+.+.||+|||+|+
T Consensus 370 ~~~~g~~~~~TGDlg~ 385 (511)
T 3e7w_A 370 FSHEGQWAYRTGDAGF 385 (511)
T ss_dssp EESSSSEEEEEEEEEE
T ss_pred cCCCCCEEEeCCCeEE
Confidence 3222233799999874
No 17
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.7e-59 Score=465.60 Aligned_cols=380 Identities=17% Similarity=0.177 Sum_probs=317.1
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 106 (436)
.|+.+.|.++++++|+++|+++. ++++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 67999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (436)
Q Consensus 107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (436)
+|+++.++.+++.++++.++++++|++++....+.. ..++. ...+........ .....
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~----~~~~~----------------~~~~~~~~~~~~--~~~~~ 139 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG----ISLVS----------------LSEIESAKLAEM--PYERT 139 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT----SEEEE----------------HHHHHHHHHHTC--CCCCS
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCcccccccc----Ccccc----------------hhhhhhcccccC--CcccC
Confidence 999999999999999999999999998764322111 01110 011111111111 22233
Q ss_pred CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (436)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~ 266 (436)
....++++++|+|||||||.||+|++||+++.+.+........+.....+++++..|++|..++. .++.++..|+++++
T Consensus 140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~~~~ 218 (521)
T 3l8c_A 140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGGTLFA 218 (521)
T ss_dssp SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTCEEEE
T ss_pred CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCCEEEE
Confidence 45678999999999999999999999999999876655444323333448999999999988875 78889999999999
Q ss_pred cCCC---CHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 267 MGKF---DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 267 ~~~~---~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
.+.. ++..+++.+.++++|++.++|+++..+..........+++||.+++||+++++++.+++.+.++++++++ .|
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~-~Y 297 (521)
T 3l8c_A 219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN-AY 297 (521)
T ss_dssp CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE-EE
T ss_pred cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEe-Cc
Confidence 8754 8999999999999999999999999998887767778899999999999999999999999997799999 99
Q ss_pred cccccCCcccccCCCCC---ccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780 344 GMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 420 (436)
Q Consensus 344 G~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~ 420 (436)
|+||+++.++....... .....++|+|+++++++|+| ++|+++++|+.|||+|+|++++.| ||++|+.+.+.|.
T Consensus 298 G~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~ 374 (521)
T 3l8c_A 298 GPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKG--YLNNPEKTAEAFF 374 (521)
T ss_dssp CCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSC--BTTCHHHHHHHEE
T ss_pred CccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChh--hcCCchHhhccCc
Confidence 99999887664322211 23567899999999999999 589999999999999999999999 9999999999884
Q ss_pred ccccCCeeecCCCCC
Q 013780 421 CEHTDSFIRGKDQQT 435 (436)
Q Consensus 421 ~~~~~~~~~tgD~~~ 435 (436)
..+.++||+|||+|+
T Consensus 375 ~~~~~~~~~TGDlg~ 389 (521)
T 3l8c_A 375 TFKGQPAYHTGDIGS 389 (521)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred CCCCceeeeCCCEEE
Confidence 445678999999873
No 18
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=5.3e-59 Score=461.98 Aligned_cols=375 Identities=24% Similarity=0.342 Sum_probs=311.6
Q ss_pred CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
++|+.++|.++++++|+++|+++. ++++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 489999999999999999999997 799999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhc----C-CCcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (436)
Q Consensus 106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (436)
++|++|.++.+++.+++++++++++|++....+.+... . ...++...+ ....+.++......
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 149 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD-------------GSGPFAPFKDLASD 149 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC-------------CCSSCEEGGGTCCC
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC-------------CCcChhhHhhccCC
Confidence 99999999999999999999999999998876553222 1 122222111 11122222221111
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (436)
Q Consensus 181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 260 (436)
.........++++++|+|||||||.||+|+++|+++...+......+.+... +++++.+|++|.+++...+...+..
T Consensus 150 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~~~~ 226 (509)
T 3ivr_A 150 -TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEA--DVNLGMLPLFHVTGLGLMLTLQQAG 226 (509)
T ss_dssp -SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred -CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCC--cEEEEeCCCcchhHHHHHHHHHHhC
Confidence 2233445678999999999999999999999999999988877666655443 9999999999999997444445555
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340 (436)
Q Consensus 261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~ 340 (436)
|++++ ...+++..+++.++++++|++.++|+++..|++.. ...++++||.++.+|++ ++.+.+.+.++++++++
T Consensus 227 g~~~~-~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~ 300 (509)
T 3ivr_A 227 GASVI-AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWA 300 (509)
T ss_dssp CEEEE-CSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEE
T ss_pred CcEEE-ecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEc
Confidence 55555 44889999999999999999999999999998876 34567899999999987 89999999997799999
Q ss_pred ccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780 341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 420 (436)
Q Consensus 341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~ 420 (436)
.||+||++++++..... ....++|+|+++++++|+|+ +++++++|+.|||+|+|++++.| ||++|+.+.+.|
T Consensus 301 -~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~t~~~f- 372 (509)
T 3ivr_A 301 -TFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDA-EDRPLPPGEVGEIVLRGPTVFKG--YWNNAAATQHAF- 372 (509)
T ss_dssp -EEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCE--ETTCHHHHHHHT-
T ss_pred -ccCccccccccccCccc---cCCCcccccCCCcEEEEECC-CCCCCCCCCceEEEEecCCcccc--ccCCHHHhHHHh-
Confidence 99999998876654332 33456999999999999995 79999999999999999999999 999999999999
Q ss_pred ccccCCeeecCCCCC
Q 013780 421 CEHTDSFIRGKDQQT 435 (436)
Q Consensus 421 ~~~~~~~~~tgD~~~ 435 (436)
.++||+|||+|+
T Consensus 373 ---~~g~~~TGDl~~ 384 (509)
T 3ivr_A 373 ---RNGWHHTGDMGR 384 (509)
T ss_dssp ---GGGSEEEEEEEE
T ss_pred ---hcCCcccccEEE
Confidence 588999999873
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.7e-58 Score=461.89 Aligned_cols=382 Identities=19% Similarity=0.239 Sum_probs=316.7
Q ss_pred Cc-hHHHHhhhccc-----CCCceEEEeCC-C--CccccHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCCcHHHHH
Q 013780 27 FS-MVHFLFRNSAS-----YSSKLALIDAD-S--DESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICF 96 (436)
Q Consensus 27 ~t-i~~~l~~~~~~-----~p~~~a~~~~~-~--~~~~Ty~el~~~~~~la~~L~~~-gv~~gd~V~l~~~n~~~~~~~~ 96 (436)
++ +.++|.+++++ +|+++|+++.+ + ++.+||+||.++++++|+.|.+. |+++||+|+|+++|++++++++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~ 116 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence 44 46888888888 99999998742 1 37899999999999999999998 9999999999999999999999
Q ss_pred HHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchh
Q 013780 97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSF 171 (436)
Q Consensus 97 lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (436)
|||+++|++++|+++.++.+++.++++.++++++|+++...+.+.... .+.++...+ ....++..+
T Consensus 117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 187 (570)
T 3c5e_A 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE---------KSCDGWLNF 187 (570)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS---------SCCTTSEEH
T ss_pred HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc---------cCccccccH
Confidence 999999999999999999999999999999999999988766554321 122222211 011234456
Q ss_pred hHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHh--hhhhHHhhhhccCCCCcEEEechhHHHHHH
Q 013780 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFG 249 (436)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 249 (436)
++++.... .........++++++|+|||||||.||+|+++|+ ++. ..... ....+ ...|++++.+|++|.++
T Consensus 188 ~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~--~~~d~~~~~~p~~~~~~ 261 (570)
T 3c5e_A 188 KKLLNEAS--TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL--QASDIMWTISDTGWILN 261 (570)
T ss_dssp HHHHHHSC--SCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC--CTTCEEEECCCTTSHHH
T ss_pred HHHhhccc--ccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC--CCCceEEEcCchHHHHH
Confidence 66665443 2223344567899999999999999999999999 444 22221 22222 23399999999999999
Q ss_pred HHHHHHhhccCCcEEEEcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHH
Q 013780 250 LSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327 (436)
Q Consensus 250 ~~~~~~~~l~~G~~v~~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~ 327 (436)
+...++.++..|+++++.+ .+++..+++.++++++|+++++|+++..|.+.. ....++++||.+++||+++++++.+
T Consensus 262 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~ 340 (570)
T 3c5e_A 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLE 340 (570)
T ss_dssp HHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHH
Confidence 8767889999999999985 689999999999999999999999999998873 3344688999999999999999999
Q ss_pred HHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEe-----cCCc
Q 013780 328 DCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR-----GPNV 402 (436)
Q Consensus 328 ~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~-----g~~~ 402 (436)
+|++.++ +++++ .||+||++..++..... ..+.+++|+|+++++++|+|+ +++++++|+.|||+++ |+.+
T Consensus 341 ~~~~~~g-~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~-~g~~~~~G~~GEl~v~~~~~~g~~v 415 (570)
T 3c5e_A 341 NWRAQTG-LDIRE-SYGQTETGLTCMVSKTM--KIKPGYMGTAASCYDVQIIDD-KGNVLPPGTEGDIGIRVKPIRPIGI 415 (570)
T ss_dssp HHHHHHS-CCCEE-EEEETTTEEEEECCTTS--CCCTTCCCEECTTCCEEEECT-TSCBCCTTCCEEEEEECSSBCCTTC
T ss_pred HHHHHhC-Cchhh-ccchhhcccceecCccc--ccCCCcccccCCCceEEEECC-CCCCCCCCCCCeeEEeccCCCCchh
Confidence 9999886 89999 99999998665544332 457789999999999999994 8999999999999999 9999
Q ss_pred ccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780 403 TPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 403 ~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
+.| ||++|+.|.+.| .++||+|||+|+
T Consensus 416 ~~G--Y~~~~~~t~~~f----~~~~~~TGDlg~ 442 (570)
T 3c5e_A 416 FSG--YVDNPDKTAANI----RGDFWLLGDRGI 442 (570)
T ss_dssp CCE--ETTCHHHHHHTE----ETTEEEEEEEEE
T ss_pred hcc--ccCChhHhhhhh----cCCccccceeEE
Confidence 999 999999999998 588999999873
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.4e-58 Score=464.65 Aligned_cols=373 Identities=18% Similarity=0.242 Sum_probs=309.0
Q ss_pred CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
..++.++|.++++++|+++|+++. ++.+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 151 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGG 151 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 378999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (436)
Q Consensus 106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (436)
++|++|.++.+++.+++++++++++|++......+... ..+...+ ....... ....
T Consensus 152 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~--~~~~ 207 (570)
T 4gr5_A 152 YTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT---TTLYVED-------------------EAASDAP--AGNL 207 (570)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS---EEEECCC----------------------------CCCC
T ss_pred EEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC---cceeeec-------------------ccccccc--cccc
Confidence 99999999999999999999999999987654332211 1111111 0000001 1222
Q ss_pred CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (436)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~ 265 (436)
.....++++++|+|||||||.||+|+++|+++.+..... ....+ ..++++++.+|++|..+.. .++.++..|++++
T Consensus 208 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 283 (570)
T 4gr5_A 208 ATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYAGF--GPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV 283 (570)
T ss_dssp CCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSSCC--STTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred CCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhcCC--CCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence 344578999999999999999999999999997664431 11222 2339999999998866654 7888999999999
Q ss_pred EcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 266 SMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 266 ~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
+.+ .+++..+++.++++++|++.++|+++..|.+... ..+++||.+++||+++++++.+++.+.++++++++ .|
T Consensus 284 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~-~Y 359 (570)
T 4gr5_A 284 LQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN-GY 359 (570)
T ss_dssp ECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE-EE
T ss_pred EcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE-ee
Confidence 986 4689999999999999999999999999987643 35789999999999999999999999998799999 99
Q ss_pred cccccCCcccccCCCC--CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc-
Q 013780 344 GMTETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG- 420 (436)
Q Consensus 344 G~tE~~~~~~~~~~~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~- 420 (436)
|+||++++++...... ......++|+|+++++++|+| ++++++++|++|||+|+|++++.| ||++|+.|.+.|.
T Consensus 360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~ 436 (570)
T 4gr5_A 360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHG--YVSRPALTAERFVA 436 (570)
T ss_dssp CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCE--ETTCHHHHHHHEEE
T ss_pred chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchh--cCCCchhhhccccc
Confidence 9999988766443221 133456799999999999999 589999999999999999999999 9999999999882
Q ss_pred -cc---ccCCeeecCCCCC
Q 013780 421 -CE---HTDSFIRGKDQQT 435 (436)
Q Consensus 421 -~~---~~~~~~~tgD~~~ 435 (436)
.+ ..++||+|||+|+
T Consensus 437 ~~~~~~~~~~w~~TGDlg~ 455 (570)
T 4gr5_A 437 DPFAGPGGERMYRTGDLAR 455 (570)
T ss_dssp CTTCCSSCCEEEEEEEEEE
T ss_pred CCCCCCCCCEEEeCCCeEE
Confidence 11 2347999999873
No 21
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3e-58 Score=468.38 Aligned_cols=405 Identities=20% Similarity=0.232 Sum_probs=321.6
Q ss_pred CcCCCCCCCchHHHHhhhcccCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH
Q 013780 19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI 94 (436)
Q Consensus 19 ~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~ 94 (436)
.|+++..-.++.++|.++++++|+++|+++.. .++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++
T Consensus 68 ~wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vv 147 (652)
T 1pg4_A 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAV 147 (652)
T ss_dssp EESTTCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHH
T ss_pred EECCCCChhHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 44544321346677888889999999999732 24789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH---------HHh----hc---CCCcEEeccCCcccc
Q 013780 95 CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVK----DL---NLPAVLLGSKDKVSS 158 (436)
Q Consensus 95 ~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~----~~---~~~~~~~~~~~~~~~ 158 (436)
++|||+++|++++|+++.++.+++.+++++++++++|+++.... .+. .. ..+.+++...... .
T Consensus 148 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~-~ 226 (652)
T 1pg4_A 148 AMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS-D 226 (652)
T ss_dssp HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC-C
T ss_pred HHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCC-c
Confidence 99999999999999999999999999999999999999875421 111 11 1122222211000 0
Q ss_pred ccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhh-HHhhhhccCCCCcE
Q 013780 159 SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM-ISAHQELVGELDHV 237 (436)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~ 237 (436)
.. ........+++++.... .........++++++|+|||||||.||||+++|++++.+... ......+. .+|+
T Consensus 227 ~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~--~~d~ 300 (652)
T 1pg4_A 227 ID--WQEGRDLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH--PGDI 300 (652)
T ss_dssp CC--CCBTTEEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCC--TTCE
T ss_pred cc--ccCCCceeHHHHHhhcC--CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCC--CCCE
Confidence 00 00112235666665433 222334456789999999999999999999999998776532 22333332 3399
Q ss_pred EEechhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccCCCcc
Q 013780 238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSL 311 (436)
Q Consensus 238 ~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l 311 (436)
+++..|++|.+++...++.+|..|+++++.+. +++..+++.++++++|+++++|+++..|.+... ....++++|
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sL 380 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 380 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTC
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCce
Confidence 99999999999996678899999999999864 589999999999999999999999999998764 344578999
Q ss_pred eEEEecCCCCcHHHHHHHHhhCC--CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCC
Q 013780 312 KLVGSGAAPLGKELMEDCQKNIP--GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP 389 (436)
Q Consensus 312 r~i~~gg~~l~~~~~~~~~~~~~--~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~ 389 (436)
|.+++||+++++++.+++.+.++ ++++++ .||+||+++.++...+.....+++++|+|++|++++|+|+ +|++++.
T Consensus 381 r~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~-~g~~v~~ 458 (652)
T 1pg4_A 381 RILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEG 458 (652)
T ss_dssp CEEEEESSCCCHHHHHHHHHHTTTTCSCEEE-EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCCS
T ss_pred EEEEEecCCCCHHHHHHHHHHhCCCCCcEEc-cccCcccccceecCCCCCcCccCCccccCcCCCeEEEECC-CCCCcCC
Confidence 99999999999999999999886 388999 9999999887766544333567899999999999999994 8999999
Q ss_pred CCceEEEEec--CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780 390 NQLGEIWVRG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 390 g~~Gel~v~g--~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
|+.|||+|+| |.++.| ||++|+.+.+.+- -..+|||+|||+|+
T Consensus 459 g~~GEl~i~g~~p~~~~g--Y~~~~e~~~~~~~-~~~~g~y~TGDlg~ 503 (652)
T 1pg4_A 459 ATEGNLVITDSWPGQART--LFGDHERFEQTYF-STFKNMYFSGDGAR 503 (652)
T ss_dssp SEEEEEEECSCCTTCCCE--ETTCHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred CceEEEEEccCCCchhhh--hcCCHHHHHhhhh-hcCCCEEECCcEEE
Confidence 9999999999 789999 9999998887651 11367999999873
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4e-58 Score=459.91 Aligned_cols=371 Identities=18% Similarity=0.239 Sum_probs=304.9
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 106 (436)
.|+.++|.++++++|+++|+++. ++.+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 116 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY 116 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 78999999999999999999987 6899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (436)
Q Consensus 107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (436)
+|++|.++.+++.+++++++++++|++......+........+...+. . .+ .... .....
T Consensus 117 vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~----~~~~--~~~~~ 176 (563)
T 1amu_A 117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEE-----------D---TI----KIRE--GTNLH 176 (563)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCC-----------S---TT----TTSC--CSCCC
T ss_pred EEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecc-----------h---hh----cccc--CccCC
Confidence 999999999999999999999999999877665544432211111110 0 00 0000 11112
Q ss_pred CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (436)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~ 266 (436)
....++++++|+|||||||.||+|++||+++.+.+........+.. .|++++.+|++|..++. .++.++..|+++++
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~ 253 (563)
T 1amu_A 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTE--KDRIGQFASISFDASVW-EMFMALLTGASLYI 253 (563)
T ss_dssp CCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCT--TCEEEECSCTTSTHHHH-HHHHHHTTTCEEEE
T ss_pred CCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCC--CCEEEEeCCccHHHHHH-HHHHHHHCCCEEEE
Confidence 3346789999999999999999999999999887766555444433 39999999999998885 77889999999999
Q ss_pred cCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 267 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
.+. +++..+++.++++++|++.++|+++..|... .+++||.+++||+++++++.++|++. +++++ .|
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~-~Y 323 (563)
T 1amu_A 254 ILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYIN-AY 323 (563)
T ss_dssp CCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEE-EE
T ss_pred cChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEE-EE
Confidence 865 6899999999999999999999998877432 46789999999999999999999874 78999 99
Q ss_pred cccccCCcccccCCCC-CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc--
Q 013780 344 GMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG-- 420 (436)
Q Consensus 344 G~tE~~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~-- 420 (436)
|+||++.+++...... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.| ||++|+.|.+.|.
T Consensus 324 G~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~~ 400 (563)
T 1amu_A 324 GPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARG--YWKRPELTSQKFVDN 400 (563)
T ss_dssp CCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCE--ETTCHHHHHHHEEEC
T ss_pred CcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChh--hCCCchhhhhhcccC
Confidence 9999987666533221 123567899999999999999 589999999999999999999999 9999999999882
Q ss_pred -ccccCCeeecCCCCC
Q 013780 421 -CEHTDSFIRGKDQQT 435 (436)
Q Consensus 421 -~~~~~~~~~tgD~~~ 435 (436)
+...++||+|||+|+
T Consensus 401 ~~~~g~~w~~TGDlg~ 416 (563)
T 1amu_A 401 PFVPGEKLYKTGDQAR 416 (563)
T ss_dssp SSSTTSEEEEEEEEEE
T ss_pred CCCCCCEEEecCCEEE
Confidence 223457999999874
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.7e-57 Score=460.74 Aligned_cols=381 Identities=22% Similarity=0.287 Sum_probs=318.4
Q ss_pred CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
+.|+.++|.++++ |+++|+++. ++++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 26 ~~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~ 101 (617)
T 3rg2_A 26 DLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA 101 (617)
T ss_dssp CCCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred cCCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence 3899999999988 999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEccchH--------HHHh-hcC-CCcEEeccCCccccccccccCcccchhhHHh
Q 013780 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVK-DLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175 (436)
Q Consensus 106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (436)
+||++|.++.+++.++++++++++++++.... ..+. ... ...+....+ .....+.+..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 169 (617)
T 3rg2_A 102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND------------SGEHNLQDAI 169 (617)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETC------------CSTTBHHHHH
T ss_pred EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccc------------ccccchhhhh
Confidence 99999999999999999999999999987543 1111 111 222222111 1112233333
Q ss_pred hhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH-HH
Q 013780 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-IL 254 (436)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~ 254 (436)
.... .........++++++|+|||||||.||+|+++|+++.+.+........+... +++++.+|++|.+++.. .+
T Consensus 170 ~~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~--~~~l~~~p~~~~~~~~~~~~ 245 (617)
T 3rg2_A 170 NHPA--EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQ--TRYLCAIPAAHNYAMSSPGS 245 (617)
T ss_dssp HSCC--SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECSCTTSHHHHHSSHH
T ss_pred cccc--cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCc--ceEEEeccchhhhhhhHHHH
Confidence 3322 2233445568899999999999999999999999999988877666655443 99999999999998864 48
Q ss_pred HhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCc--cCCCcceEEEecCCCCcHHHHHHHHhh
Q 013780 255 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKN 332 (436)
Q Consensus 255 ~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~lr~i~~gg~~l~~~~~~~~~~~ 332 (436)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+...... ..+++||.+++||+++++++.+++.+.
T Consensus 246 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 325 (617)
T 3rg2_A 246 LGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAE 325 (617)
T ss_dssp HHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHH
Confidence 899999999999988999999999999999999999999999887644332 368999999999999999999999999
Q ss_pred CCCCeeeeccccccccCCcccccCCCCCccCcCcccccc-CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCC
Q 013780 333 IPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINF 411 (436)
Q Consensus 333 ~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~ 411 (436)
++ +++++ .||+||++..++..... ......++|+|+ ++++++|+| +++++++.|++|||+|+|+.++.| ||++
T Consensus 326 ~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~G--Y~~~ 399 (617)
T 3rg2_A 326 IG-CQLQQ-VFGMAEGLVNYTRLDDS-AEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRG--YYKS 399 (617)
T ss_dssp TC-SEEEE-EEEETTEEEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSC--CTTC
T ss_pred hC-CcEEE-EeccCcceeecccCCCc-ccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccch--hcCC
Confidence 97 99999 99999987544432221 133456889998 788999999 589999999999999999999999 9999
Q ss_pred hhhhhhhccccccCCeeecCCCCC
Q 013780 412 FVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
|+.|.+.|. .++||+|||+|+
T Consensus 400 p~~t~~~f~---~~~~yrTGDl~~ 420 (617)
T 3rg2_A 400 PQHNASAFD---ANGFYCSGDLIS 420 (617)
T ss_dssp HHHHHHHBC---TTSCEEEEEEEE
T ss_pred hhhhhhccC---CCCceecCceEE
Confidence 999999983 578999999874
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=9.9e-58 Score=464.73 Aligned_cols=407 Identities=20% Similarity=0.247 Sum_probs=322.0
Q ss_pred CcCCCCCCCchHHHHhhhcccCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCCcHH
Q 013780 19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFP 93 (436)
Q Consensus 19 ~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~gv~~gd~V~l~~~n~~~~~ 93 (436)
.|+++..-.++.++|.++++++|+++|+++.. .++++||+||.+++.++|+.|+ ++|+++||+|+|+++|+++++
T Consensus 74 ~wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v 153 (663)
T 1ry2_A 74 AWFLNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI 153 (663)
T ss_dssp CBSTTCEECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH
T ss_pred CcCCCCCccHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH
Confidence 45655332356678889999999999999732 3478999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH---------HHhhc----C-CCcEEeccCCccccc
Q 013780 94 ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDL----N-LPAVLLGSKDKVSSS 159 (436)
Q Consensus 94 ~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~----~-~~~~~~~~~~~~~~~ 159 (436)
+++|||+++|++++|+++.++.+++.+++++++++++|+++.... .+... . .+.+++.........
T Consensus 154 ~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 233 (663)
T 1ry2_A 154 ITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 233 (663)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC
T ss_pred HHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcc
Confidence 999999999999999999999999999999999999999875421 12111 1 122222211100000
Q ss_pred cccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhH-HhhhhccCCCCcEE
Q 013780 160 GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDHVV 238 (436)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~~ 238 (436)
. ........+.++..... .........++++++|+|||||||.||||+++|++++.+.... .....+ ...|++
T Consensus 234 ~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~ 307 (663)
T 1ry2_A 234 A--FHAPRDLDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT--HQEDVF 307 (663)
T ss_dssp C--CCSSSEEEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC--CSSCEE
T ss_pred c--cCCCccccHHHHHhhcC--CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCC--CCCcEE
Confidence 0 00112234666655432 2223344568899999999999999999999999987665322 222333 233999
Q ss_pred EechhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccCCCcce
Q 013780 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLK 312 (436)
Q Consensus 239 ~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~lr 312 (436)
++..|++|++++.+.++.+|..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....++++||
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr 387 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLR 387 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCC
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceE
Confidence 9999999999987678899999999999853 589999999999999999999999999988764 3455789999
Q ss_pred EEEecCCCCcHHHHHHHHhhCC--CCeeeeccccccccCCcccccCC-CCCccCcCccccccCCcEEEEEeCCCCccCCC
Q 013780 313 LVGSGAAPLGKELMEDCQKNIP--GATIFQVGYGMTETCAPISLENP-LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP 389 (436)
Q Consensus 313 ~i~~gg~~l~~~~~~~~~~~~~--~~~i~~~~YG~tE~~~~~~~~~~-~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~ 389 (436)
.+++||+++++++.+++.+.++ ++++++ .||+||+++.++...+ .....+++++|+|++|++++|+|+++|++++.
T Consensus 388 ~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~ 466 (663)
T 1ry2_A 388 CLGSVGEPIAAEVWEWYSEKIGKNEIPIVD-TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT 466 (663)
T ss_dssp EEEECSSCCCHHHHHHHHHTTSCSSSCEEE-CBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEEC
T ss_pred EEEEEcCCCCHHHHHHHHHHhCCCCceEEE-eECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCC
Confidence 9999999999999999999886 488999 9999999877665543 22256789999999999999999658999998
Q ss_pred -CCceEEEEec--CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780 390 -NQLGEIWVRG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 390 -g~~Gel~v~g--~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
|+.|||+++| |+++.| ||++|+.+.+.+. -..+|||+|||+|+
T Consensus 467 ~g~~Gel~i~g~~p~~~~g--y~~~~~~~~~~~~-~~~~g~y~TGDlg~ 512 (663)
T 1ry2_A 467 SHAEGVLAVKAAWPSFART--IWKNHDRYLDTYL-NPYPGYYFTGDGAA 512 (663)
T ss_dssp SSCEEEEEESSCCTTSCCE--ETTCHHHHHHHHT-SSSTTSEEEEEEEE
T ss_pred CCcceEEEEecCCCchhcc--cccChHHHHHhhh-cCCCCEEEcCCEEE
Confidence 9999999999 589999 9999999888651 11267999999873
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=7.7e-58 Score=461.71 Aligned_cols=371 Identities=16% Similarity=0.149 Sum_probs=306.9
Q ss_pred CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
+.|+.++|.++++++|+++|+++. ++.+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus 26 ~~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 26 HPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 478999999999999999999997 789999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (436)
Q Consensus 106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (436)
++|++|.++.+++.+++++++++++++++......... ... .+... ........
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~---------------------~~~~~---~~~~~~~~ 157 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL--PCV---------------------PVRHL---PAAPASVA 157 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS--CEE---------------------EGGGC---CCCCCCSS
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCC--cee---------------------eeccC---CcCCcccc
Confidence 99999999999999999999999999765432111100 000 00000 00001122
Q ss_pred CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (436)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~ 265 (436)
.....++++++|+|||||||.||||+++|+++.+.+.. .....+ ..++++++.+|++|..++. .++.+|..|++++
T Consensus 158 ~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 233 (620)
T 4dg8_A 158 RPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAF--APQMRFLVNSPLSFDAATL-EIWGALLNGGCCV 233 (620)
T ss_dssp CCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTT--CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCC--CCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence 23446889999999999999999999999999876544 222222 2339999999999999986 6899999999999
Q ss_pred EcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 266 SMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 266 ~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
+.+ .+++..+++.++++++|+++++|+++..|.+.. ...+++||.+++||+++++++.+++.+.++++++++ .|
T Consensus 234 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n-~Y 309 (620)
T 4dg8_A 234 LNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN-GY 309 (620)
T ss_dssp ECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE-EE
T ss_pred eCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe-eE
Confidence 964 679999999999999999999999999998753 236789999999999999999999999887799999 99
Q ss_pred cccccCCcccccCC--CCCccCcCccccccCCcEEEEEeCCCCcc-CCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780 344 GMTETCAPISLENP--LVGVRRSGSAGTLVAGVEAQIVSVDTLKP-LPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 420 (436)
Q Consensus 344 G~tE~~~~~~~~~~--~~~~~~~~~~G~p~~~~~v~i~d~~~~~~-~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~ 420 (436)
|+||++.+++.... ........++|+|+++++++|+|+ ++.+ ++.|++|||+|+|+.++.| ||++|+.|.+.|.
T Consensus 310 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~G--Y~~~p~~t~~~f~ 386 (620)
T 4dg8_A 310 GPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQG--YRNDAARTRASFV 386 (620)
T ss_dssp CCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSE--ETTCHHHHHHHEE
T ss_pred chhhhhhheEEEeccccccCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccc--cCCChhhhhhhhc
Confidence 99999877654322 211345678999999999999996 5555 8899999999999999999 9999999999982
Q ss_pred c--cccC--CeeecCCCCC
Q 013780 421 C--EHTD--SFIRGKDQQT 435 (436)
Q Consensus 421 ~--~~~~--~~~~tgD~~~ 435 (436)
. +..+ +||+|||+|+
T Consensus 387 ~~p~~~~~~~~yrTGDl~~ 405 (620)
T 4dg8_A 387 ELPYRGRLLRAYRTGDRAR 405 (620)
T ss_dssp EEEETTEEEEEEEEEEEEE
T ss_pred cCCCCCCCceEEeCCCEEE
Confidence 1 1111 7999999874
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=4.1e-58 Score=464.13 Aligned_cols=388 Identities=22% Similarity=0.295 Sum_probs=315.5
Q ss_pred CCchHHHHhhhcccCCCceEEEeCC--CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 013780 26 SFSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103 (436)
Q Consensus 26 ~~ti~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G 103 (436)
.+|+.++|.++++++|+++|+++.+ .++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|
T Consensus 10 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 89 (590)
T 3kxw_A 10 CQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAG 89 (590)
T ss_dssp CSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhC
Confidence 3899999999999999999998653 24899999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCC---HHHHHHHHHhcCCcEEEEccchHHHHhhcCCCc-EEeccCCccccccccccCcccchhhHHhhhcC
Q 013780 104 AIASTANPVYT---VSELSKQVKDSNPKLVITVPELWDKVKDLNLPA-VLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179 (436)
Q Consensus 104 ~~~v~l~~~~~---~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (436)
++++|++|.++ .+++.++++.+++++++++.+....+....... .... ...+...+.+.....
T Consensus 90 ~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 156 (590)
T 3kxw_A 90 CIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFL-------------KIPAIALESIELNRS 156 (590)
T ss_dssp CEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEET-------------TEEEEEGGGCCGGGG
T ss_pred cEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccc-------------ccceeechhcccccc
Confidence 99999999884 578999999999999999988776654432000 0000 000001111111111
Q ss_pred CCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhcc
Q 013780 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259 (436)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 259 (436)
.........++++++|+|||||||.||+|++||+++..++......+.+... +++++.+|++|.+|+...++.++.
T Consensus 157 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~h~~g~~~~~~~~l~ 232 (590)
T 3kxw_A 157 --SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDE--TIIFSWLPPHHDMGLIGCILTPIY 232 (590)
T ss_dssp --GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHHTTTHHHHH
T ss_pred --ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCc--CeEEEecCCCcchhhHHHHHHHHh
Confidence 2223345678899999999999999999999999999998877666655443 999999999999999755899999
Q ss_pred CCcEEEEcCCC----CHHHHHHHHHHhcceEEEecHHHHHHHHhc---cccCccCCCcceEEEecCCCCcHHHHHHHHhh
Q 013780 260 KGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN---SLVRKFDISSLKLVGSGAAPLGKELMEDCQKN 332 (436)
Q Consensus 260 ~G~~v~~~~~~----~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~---~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~ 332 (436)
.|+++++.+++ ++..+++.++++++|++.++|.++..+.+. ......++++||.+++||+++++++.++|++.
T Consensus 233 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~ 312 (590)
T 3kxw_A 233 GGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQA 312 (590)
T ss_dssp HTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred cCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHH
Confidence 99999999765 899999999999999999999999988775 33345678999999999999999999999998
Q ss_pred CC-----CCeeeeccccccccCCcccccCCC-------------------------CCccCcCccccccCCcEEEEEeCC
Q 013780 333 IP-----GATIFQVGYGMTETCAPISLENPL-------------------------VGVRRSGSAGTLVAGVEAQIVSVD 382 (436)
Q Consensus 333 ~~-----~~~i~~~~YG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~p~~~~~v~i~d~~ 382 (436)
|+ +.++++ .||+||++++++..... ....+..++|+|+++ ++|+|++
T Consensus 313 ~~~~g~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~ 389 (590)
T 3kxw_A 313 FKEFGFRKEAFYP-CYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPD 389 (590)
T ss_dssp HGGGTCCGGGEEE-EEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTT
T ss_pred HHHcCCCcccccc-ccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCC
Confidence 74 357999 99999999877654321 112345789999998 8899987
Q ss_pred CCccCCCCCceEEEEecCCcccCccccCChhhhhhhccc--ccc-CC--eeecCCCCC
Q 013780 383 TLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC--EHT-DS--FIRGKDQQT 435 (436)
Q Consensus 383 ~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~--~~~-~~--~~~tgD~~~ 435 (436)
++.++++|++|||+|+|++++.| ||++|+.|.+.|.. ++. +| ||+|||+|+
T Consensus 390 ~~~~~~~g~~GEl~v~g~~v~~G--Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~ 445 (590)
T 3kxw_A 390 TLIPCDFDQVGEIWVQSNSVAKG--YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGF 445 (590)
T ss_dssp TCCBCCTTBCEEEEEESTTSCCC--BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEE
T ss_pred CCcCCCCCCEEEEEEeCCccccc--ccCChhHHHHHHhccccCCCCCCcEEecCcEEE
Confidence 79999999999999999999999 99999999999821 111 13 999999874
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.2e-56 Score=450.53 Aligned_cols=381 Identities=17% Similarity=0.158 Sum_probs=306.2
Q ss_pred CCCchHHHHhhhcccCCCceEEEeCCC--------CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHH
Q 013780 25 PSFSMVHFLFRNSASYSSKLALIDADS--------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF 96 (436)
Q Consensus 25 ~~~ti~~~l~~~~~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~ 96 (436)
+++|+.++|.++++++|+++|+++.+. ++++||+||.++++++|+.|.+.|+ +||+|+|+++|++++++++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~ 96 (562)
T 3ite_A 18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII 96 (562)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHH
Confidence 349999999999999999999987531 2789999999999999999999999 7999999999999999999
Q ss_pred HHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhh
Q 013780 97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (436)
Q Consensus 97 lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (436)
|||+++|++++|++|.++.+++.+++++++++++|+++.....+.... ...++... ...+.+...
T Consensus 97 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~ 161 (562)
T 3ite_A 97 VGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPP-ETKVLDTK--------------NQSFIENLS 161 (562)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCT-TCEEEETT--------------CHHHHHHHH
T ss_pred HHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCc-cceeeccc--------------chhhhhhcc
Confidence 999999999999999999999999999999999999876543321111 11111111 112333333
Q ss_pred hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh------ccCCCCcEEEechhHHHHHHH
Q 013780 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE------LVGELDHVVLCVLPMFHVFGL 250 (436)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~~~g~ 250 (436)
... .........++++++|+|||||||.||+|+++|+++...+........ ..-...+++++..|+.|..++
T Consensus 162 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (562)
T 3ite_A 162 TQD--TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI 239 (562)
T ss_dssp HSC--CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH
T ss_pred ccc--ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH
Confidence 332 222334456788999999999999999999999999888766544332 111223889999999888877
Q ss_pred HHHHHhhccCCcEEEEcCCCC-HHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHH
Q 013780 251 SVILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 329 (436)
Q Consensus 251 ~~~~~~~l~~G~~v~~~~~~~-~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~ 329 (436)
. .++.++..|+++++.+.+. +..+++.++++++|++.++|+++..+.... .++++||.+++||+++++++.++|
T Consensus 240 ~-~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~~~~lr~~~~gG~~l~~~~~~~~ 314 (562)
T 3ite_A 240 G-EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAPHLVYLGVGGEKMTPRTQQIW 314 (562)
T ss_dssp H-HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GGSTTCCEEEEESSCCCHHHHHHH
T ss_pred H-HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cccCceEEEEEecCCCCHHHHHHH
Confidence 5 6788999999999986543 577889999999999999999988775433 367899999999999999999999
Q ss_pred HhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCcccc
Q 013780 330 QKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYI 409 (436)
Q Consensus 330 ~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~ 409 (436)
++.++ +++++ .||+||++..++...... .....++|+|+++++++|+|++++.++++|+.|||+|+|++++.| ||
T Consensus 315 ~~~~~-~~~~~-~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~G--Y~ 389 (562)
T 3ite_A 315 SSSDR-VALVN-VYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANG--YL 389 (562)
T ss_dssp TTCSS-CEEEE-EECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCE--ES
T ss_pred hhCCC-cEEEE-eeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchh--hC
Confidence 99876 99999 999999987666543332 456788999999999999998889999999999999999999999 99
Q ss_pred CChhhhhhhccccccCCeeecCCCCC
Q 013780 410 NFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
++|+.+...+ .+.++||+|||+|+
T Consensus 390 ~~p~~t~~~~--~~g~~w~~TGDlg~ 413 (562)
T 3ite_A 390 NRPDAKGFCD--INGRKMYRTGDIVR 413 (562)
T ss_dssp SCTTCCSEEE--ETTEEEEEEEEEEE
T ss_pred CCcccccccc--CCCCEEEecCCEEE
Confidence 9999887654 22335999999874
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3e-56 Score=449.44 Aligned_cols=378 Identities=21% Similarity=0.242 Sum_probs=312.9
Q ss_pred CchHHHHhhhcccCCCceEEEeCCC-CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADS-DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
.|+.++|.++++++|+.+++.+... ++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 21 ~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 100 (576)
T 3gqw_A 21 PTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLV 100 (576)
T ss_dssp SSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCe
Confidence 7899999999999999988865432 389999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCC-------HHHHHHHHHhcCCcEEEEccchHHHHhhcC---CCcEEeccCCccccccccccCcccchhhHHh
Q 013780 106 ASTANPVYT-------VSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175 (436)
Q Consensus 106 ~v~l~~~~~-------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (436)
++|+++.++ .+++.++++.++++++|++++....+.... ....++ ... ..
T Consensus 101 ~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-~~ 160 (576)
T 3gqw_A 101 AVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVL-------------------SHA-WF 160 (576)
T ss_dssp EEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEE-------------------EHH-HH
T ss_pred EeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceec-------------------chh-hh
Confidence 999999998 789999999999999999988766654432 111111 001 11
Q ss_pred hhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhh-hhccCCCCcEEEechhHHHHHHHHHHH
Q 013780 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-QELVGELDHVVLCVLPMFHVFGLSVIL 254 (436)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~g~~~~~ 254 (436)
.... ..........++++++|+|||||||.||+|+++|+++..++...... ..+ ..++++++.+|++|.+|+...+
T Consensus 161 ~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~~~ 237 (576)
T 3gqw_A 161 KALP-EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKL--RPGDRCVSWLPFYHDMGLVGFL 237 (576)
T ss_dssp HTSC-CCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCC--CTTCCEEECCCTTSHHHHHHHT
T ss_pred hccc-ccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCC--CCcceEEEcCCccccccHHHHH
Confidence 1111 02222334567899999999999999999999999999887665433 233 2339999999999999998778
Q ss_pred HhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhccc---cCccCCCcceEEEecCCCCcHHHHH
Q 013780 255 YDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL---VRKFDISSLKLVGSGAAPLGKELME 327 (436)
Q Consensus 255 ~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~---~~~~~l~~lr~i~~gg~~l~~~~~~ 327 (436)
+.++..|+++++.+. +++..+++.++++++|+++++|+++..+.+... ....++++||.+++||+++++++.+
T Consensus 238 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~ 317 (576)
T 3gqw_A 238 LTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLH 317 (576)
T ss_dssp HHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHH
Confidence 889999999998864 588999999999999999999999988876533 2445789999999999999999999
Q ss_pred HHHhhCC-----CCeeeeccccccccCCcccccCCCCC--------------------------ccCcCccccccCCcEE
Q 013780 328 DCQKNIP-----GATIFQVGYGMTETCAPISLENPLVG--------------------------VRRSGSAGTLVAGVEA 376 (436)
Q Consensus 328 ~~~~~~~-----~~~i~~~~YG~tE~~~~~~~~~~~~~--------------------------~~~~~~~G~p~~~~~v 376 (436)
+|.+.|+ +..+++ .||+||++.+++....... .....++|+|++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~ 396 (576)
T 3gqw_A 318 QFAECFRQVNFDNKTFMP-CYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGI 396 (576)
T ss_dssp HHHHHHGGGTCCGGGEEE-EEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEE
T ss_pred HHHHHHhhcCCCcccccc-cCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeE
Confidence 9999874 588999 9999999887765432210 0112379999999999
Q ss_pred EEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 435 (436)
Q Consensus 377 ~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 435 (436)
+|+| ++|+++++|++|||+|+|+.++.| ||++|+.+...+ .+|||+|||+|+
T Consensus 397 ~i~d-~~g~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~~~~~~----~~g~~~TGDl~~ 448 (576)
T 3gqw_A 397 EIRN-EAGMPVAERVVGHICISGPSLMSG--YFGDQVSQDEIA----ATGWLDTGDLGY 448 (576)
T ss_dssp EEEC-TTSCBCCTTBCEEEEEESTTSCCC--BTTCHHHHHHHH----HHSCEEEEEEEE
T ss_pred EEEC-CCCCCCCCCCeEEEEEeCcccccc--ccCCcccccccc----CCCeeeccceEE
Confidence 9999 699999999999999999999999 999999988876 578999999874
No 29
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.4e-57 Score=446.88 Aligned_cols=381 Identities=22% Similarity=0.300 Sum_probs=299.6
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 106 (436)
|||.++|.++++++|+++|+++. ++++||+||.++++++|+.|++. +||+|+|+++|++++++++|||+++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 75 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI 75 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 57899999999999999999987 78999999999999999999986 89999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC--CCcEEeccCCccccccccccCccc-chhhHHhhhcCCCCC
Q 013780 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSSKI-VSFHDLIELSGSVTD 183 (436)
Q Consensus 107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 183 (436)
+|+++.++.+++.++++.++++++|++........... ........................ ...+....... ...
T Consensus 76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (501)
T 3ipl_A 76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKES-PSN 154 (501)
T ss_dssp EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CC-HHH
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCC-ccc
Confidence 99999999999999999999999999876543221110 000000000000000000000000 00000000000 001
Q ss_pred CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcE
Q 013780 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263 (436)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 263 (436)
.......++++++|+|||||||.||+|+++|+++...+........+... +++++.+|++|.+|+. .++.++..|++
T Consensus 155 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~-~~~~~l~~G~~ 231 (501)
T 3ipl_A 155 ILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRD--TNWLSVLPIYHISGLS-VLLRAVIEGFT 231 (501)
T ss_dssp HTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTT--CEEEECSCTTSHHHHH-HHHHHHHHTCE
T ss_pred ccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCcc--CEEEEeCcHHHHHHHH-HHHHHHHcCce
Confidence 12234568899999999999999999999999999988776666555333 9999999999999996 58899999999
Q ss_pred EEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 264 v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
+++.+++++..+++.++++++|+++++|+++..|.+...... .+||.+++||+++++++.+++++. ++++++ .|
T Consensus 232 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~-~Y 305 (501)
T 3ipl_A 232 VRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYN-SF 305 (501)
T ss_dssp EEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEE-EE
T ss_pred EEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEec-cc
Confidence 999999999999999999999999999999999988765433 289999999999999999999984 599999 99
Q ss_pred cccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccc
Q 013780 344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEH 423 (436)
Q Consensus 344 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~ 423 (436)
|+||+++.++.........+.+++|+|+++++++|+|++ +|+.|||+++|+.++.| ||++|+.+.. |
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~g--Y~~~~~~t~~-~---- 372 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNG--YLYPTDLTGT-F---- 372 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSC--CSBSTTCCCS-E----
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhh--hCcChhhcch-h----
Confidence 999998765554433224577899999999999999963 46789999999999999 9999999887 5
Q ss_pred cCCeeecCCCCC
Q 013780 424 TDSFIRGKDQQT 435 (436)
Q Consensus 424 ~~~~~~tgD~~~ 435 (436)
.++||+|||+|+
T Consensus 373 ~~g~~~TGDl~~ 384 (501)
T 3ipl_A 373 ENGYFNTGDIAE 384 (501)
T ss_dssp ETTEEEEEEEEE
T ss_pred cCCceecCCEEE
Confidence 578999999874
No 30
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6.6e-57 Score=445.76 Aligned_cols=363 Identities=25% Similarity=0.340 Sum_probs=299.0
Q ss_pred CchHHHHhhhcccCCC-ceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 27 FSMVHFLFRNSASYSS-KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
+|+.+.|.++++++|+ ++|+++. ++++||+||.++++++|+.|. .|++|+|+++|++++++++|||+++|++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 6799999999999997 9999997 799999999999999999874 4889999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (436)
Q Consensus 106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (436)
++|++|.++.+++.+++++++++++|++..... .........+..+ . ... ....
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~-------------------~---~~~--~~~~ 148 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL--PPALGALERVDVD-------------------V---RAR--GAVP 148 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC--CGGGTTSEEEECC-------------------T---TCC--CCCC
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc--chhhccccccccc-------------------c---ccc--cCCC
Confidence 999999999999999999999999999864210 0000000000000 0 000 1122
Q ss_pred CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (436)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~ 265 (436)
.....++++++|+|||||||.||+|+++|+++...+......+.+... +++++.+|++|..|+...++.++..|++++
T Consensus 149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (505)
T 3nyq_A 149 EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGE--DVLVQGLPLFHVHGLVLGILGPLRRGGSVR 226 (505)
T ss_dssp CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCC--cEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence 334567899999999999999999999999999998877776666444 999999999999998767899999999999
Q ss_pred EcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc---CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV---RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG 342 (436)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~---~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~ 342 (436)
+.+.+++..+++.+ ++++|+++++|+++..|.+.... ....++++|.+++||+++++++.+++++.++ .++++ .
T Consensus 227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~-~ 303 (505)
T 3nyq_A 227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG-RRVIE-R 303 (505)
T ss_dssp ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEE-E
T ss_pred ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC-Ceeec-c
Confidence 99999999999999 88999999999999999874332 2235788999999999999999999999986 99999 9
Q ss_pred ccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCC---CCceEEEEecCCcccCccccCChhhhhhhc
Q 013780 343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP---NQLGEIWVRGPNVTPGIVYINFFVFTLFLW 419 (436)
Q Consensus 343 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~---g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~ 419 (436)
||+||++..++..... ....+++|+|+++++++|+|+ ++++++. |++|||+|+|++++.| ||++|+.|.+.|
T Consensus 304 YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f 378 (505)
T 3nyq_A 304 YGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTE--YLNRPDATAAAF 378 (505)
T ss_dssp EEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCE--ETTCHHHHHHTB
T ss_pred cchhhcccccccCCCC--CCCCCCcccCCCCCEEEEECC-CCCCcccCCCCceEEEEEecCchhhh--hCCChhHhhhhh
Confidence 9999998766654433 567789999999999999995 7888876 8999999999999999 999999999988
Q ss_pred cccccCCeeecCCCCC
Q 013780 420 GCEHTDSFIRGKDQQT 435 (436)
Q Consensus 420 ~~~~~~~~~~tgD~~~ 435 (436)
. .++||+|||+|+
T Consensus 379 ~---~~g~y~TGDl~~ 391 (505)
T 3nyq_A 379 T---EDGFFRTGDMAV 391 (505)
T ss_dssp C---TTSCEEEEEEEE
T ss_pred c---CCCCCccCCeEE
Confidence 3 578999999874
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.6e-54 Score=470.10 Aligned_cols=376 Identities=19% Similarity=0.223 Sum_probs=310.7
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 106 (436)
.++.++|.++++++|+++|+++. ++.+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~ 541 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY 541 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (436)
Q Consensus 107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (436)
||++|.++.+++.++++++++++++++......+.........+..+.. ..+ . .. .....
T Consensus 542 vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~----~-~~--~~~~~ 601 (1304)
T 2vsq_A 542 LPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ-------------TRF----E-EQ--ASDPA 601 (1304)
T ss_dssp EECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG-------------GGG----G-SC--SSCCC
T ss_pred EEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc-------------ccc----c-cc--cCCCC
Confidence 9999999999999999999999999997765443322211111111100 000 0 01 11223
Q ss_pred CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (436)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~ 266 (436)
....++++|+|+|||||||.||||+++|+++.+.. .......+ ...++++...|++|..+.+ .++.+|..|+++++
T Consensus 602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~~~--~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~ 677 (1304)
T 2vsq_A 602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYMAF--SDQDTFLSVSNYAFDAFTF-DFYASMLNAARLII 677 (1304)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSSCC--CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEE
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhcCC--CCCCEEEEECCccHHHHHH-HHHHHHHcCCEEEE
Confidence 34568899999999999999999999999998652 21122222 2338999999998887774 78999999999999
Q ss_pred cCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 267 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
.+. +++..+++.+.++++|++.++|+++..|.+... ..+++||.+++||+++++++.++|.+.+++.++++ .|
T Consensus 678 ~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~Y 753 (1304)
T 2vsq_A 678 ADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DWMKGLRCILFGGERASVPHVRKALRIMGPGKLIN-CY 753 (1304)
T ss_dssp CCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEE-EE
T ss_pred CChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEE-eE
Confidence 964 689999999999999999999999999976532 24678999999999999999999999988789999 99
Q ss_pred cccccCCcccccCCCC--CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc-
Q 013780 344 GMTETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG- 420 (436)
Q Consensus 344 G~tE~~~~~~~~~~~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~- 420 (436)
|+||++..++...... ......++|+|+++++++|+| ++++++|.|++|||+|+|+.++.| |+++|+.|.++|.
T Consensus 754 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~G--Y~~~p~~T~~~f~~ 830 (1304)
T 2vsq_A 754 GPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKG--YVNRADLTKEKFIE 830 (1304)
T ss_dssp CCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCC--BTTCHHHHHHHEEE
T ss_pred ChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCcc--ccCCcccchhhhcc
Confidence 9999987766543221 134567899999999999999 489999999999999999999999 9999999999982
Q ss_pred --ccccCCeeecCCCCC
Q 013780 421 --CEHTDSFIRGKDQQT 435 (436)
Q Consensus 421 --~~~~~~~~~tgD~~~ 435 (436)
+...++||+|||+|+
T Consensus 831 ~p~~~g~~~yrTGDl~~ 847 (1304)
T 2vsq_A 831 NPFKPGETLYRTGDLAR 847 (1304)
T ss_dssp CTTSTTCEEEEEEEEEE
T ss_pred CCCCCCCeeEecCCeEE
Confidence 223457999999874
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1e-32 Score=268.02 Aligned_cols=223 Identities=18% Similarity=0.222 Sum_probs=182.1
Q ss_pred CCCC-CCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC-CCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780 188 SVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (436)
Q Consensus 188 ~~~~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~ 265 (436)
...+ +++++|+|||||||.||+|+++|+++...+..........+ ..++++++..|+.|..+....++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 88999999999999999999999999887665544332222 233999999998777776667888999999999
Q ss_pred EcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccC--CCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
+.+.+++..+++.|+++++|+++++|+++..|++.......+ +++||.+++||+++++++.+++++.|+ +++++ .|
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~-~Y 238 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYN-SF 238 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEE-EE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEe-cC
Confidence 998889999999999999999999999999998876554443 789999999999999999999999996 99999 99
Q ss_pred cccccCCc-ccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780 344 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE 422 (436)
Q Consensus 344 G~tE~~~~-~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~ 422 (436)
|+||+++. +..... ....+|.|.++++++|+|+++++++++|+.|||+++|.... .+
T Consensus 239 G~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~--------------~~--- 296 (436)
T 3qov_A 239 GMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDRE--------------MM--- 296 (436)
T ss_dssp EEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCC--------------SS---
T ss_pred cchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcC--------------Cc---
Confidence 99999654 333321 12236778889999999988999999999999999985311 11
Q ss_pred ccCCeeecCCCCC
Q 013780 423 HTDSFIRGKDQQT 435 (436)
Q Consensus 423 ~~~~~~~tgD~~~ 435 (436)
.++||+|||+|+
T Consensus 297 -~~~~y~TGDl~~ 308 (436)
T 3qov_A 297 -PLIRYRTRDLTR 308 (436)
T ss_dssp -CCCSEEEEEEEC
T ss_pred -eEEEEEcCCEEE
Confidence 356888888764
No 33
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=2.5e-31 Score=258.29 Aligned_cols=223 Identities=21% Similarity=0.232 Sum_probs=177.1
Q ss_pred CCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC-CCCcEEEechhH-HHHHHHHHHHHhhccCCcEEE
Q 013780 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV 265 (436)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~v~ 265 (436)
...++++++++|||||||.||+|+++|+++...+..........+ ..+|++++.+|+ +|..++. ..+.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEE
Confidence 446788999999999999999999999999877654433222222 233899999998 5666664 6788899999999
Q ss_pred EcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccC--CCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
+.+.+++..+++.|+++++|+++++|+++..|++.......+ +++||.+++||+++++++.+++++.|+ +++++ .|
T Consensus 165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~-~Y 242 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVD-IY 242 (437)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEE-EE
T ss_pred eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEe-cC
Confidence 888889999999999999999999999999998865433333 579999999999999999999999886 99999 99
Q ss_pred cccccCCc-ccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780 344 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE 422 (436)
Q Consensus 344 G~tE~~~~-~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~ 422 (436)
|+||+++. +...... ....++.|.++++++|+|+++|+++++|+.|||+++|.. .+.+
T Consensus 243 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t--------------~~~~--- 301 (437)
T 2y27_A 243 GLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT--------------KEAL--- 301 (437)
T ss_dssp EETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS--------------CSSS---
T ss_pred CchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC--------------cCCc---
Confidence 99998543 3333221 111256677899999999878999999999999999842 1112
Q ss_pred ccCCeeecCCCCC
Q 013780 423 HTDSFIRGKDQQT 435 (436)
Q Consensus 423 ~~~~~~~tgD~~~ 435 (436)
.++||+|||+|+
T Consensus 302 -~~~~y~TGDl~~ 313 (437)
T 2y27_A 302 -PIIRYRTRDLTR 313 (437)
T ss_dssp -CCCSEEEEEEEC
T ss_pred -hhheeecCCEEE
Confidence 356888888764
No 34
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=5.9e-32 Score=256.75 Aligned_cols=227 Identities=15% Similarity=0.088 Sum_probs=179.2
Q ss_pred CCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC-CCCcEEEechhH-HHHHHHHHHHHhhccCCcEEE
Q 013780 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV 265 (436)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~v~ 265 (436)
...++++++|+|||||||.||+|+++|+++...+..........+ ..++++++.+|+ +|..++. ..+.++..|+ ++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EE
Confidence 457788999999999999999999999999888764433322222 233899999999 9999886 5555688888 66
Q ss_pred EcCCCCHH-----------------------HHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCc
Q 013780 266 SMGKFDIE-----------------------MALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322 (436)
Q Consensus 266 ~~~~~~~~-----------------------~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~ 322 (436)
+...++|. .+++.++++++|++.++|+++..|++.......++++||.+++||++++
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 67677887 8888999999999999999999999886544456789999999999999
Q ss_pred HHHHHHHH-hhCCCCeeeeccccccccCCcccccCCCCCccCcC-ccccc------cCCcEEEEEeCCCCccCCCCCceE
Q 013780 323 KELMEDCQ-KNIPGATIFQVGYGMTETCAPISLENPLVGVRRSG-SAGTL------VAGVEAQIVSVDTLKPLPPNQLGE 394 (436)
Q Consensus 323 ~~~~~~~~-~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~-~~G~p------~~~~~v~i~d~~~~~~~~~g~~Ge 394 (436)
+++.++++ +.||++++++ .||+||+++++... +. ++|+| +++++++|+|+++++++++|+.||
T Consensus 245 ~~~~~~~~~~~~p~~~v~~-~YG~TE~~~~~~~~--------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GE 315 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSA-SYGSTSALGVSRSL--------LITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGN 315 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEE-EEEEGGGTEEEEEC--------CBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEE
T ss_pred HHHHHHHHHHhCCCcEEEc-ccCchhhhcceecc--------ccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceE
Confidence 99999999 9997799999 99999988655321 22 58998 999999999987999999999999
Q ss_pred EEEecC---CcccCccccCChhhhhhhccccccCCeeecC
Q 013780 395 IWVRGP---NVTPGIVYINFFVFTLFLWGCEHTDSFIRGK 431 (436)
Q Consensus 395 l~v~g~---~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tg 431 (436)
|+|++. ..+.+ |+..+..+.... .++|+.+|
T Consensus 316 l~vt~l~~~~~l~r--y~tgD~~~~~~~----~~g~~~d~ 349 (369)
T 3hgu_A 316 VIVTHLSPWAFYPR--VAERDTAIRLPG----VSGFAGDR 349 (369)
T ss_dssp EEEEEEETTEEEEE--EEEEEEEEEECC----STTCSSCE
T ss_pred EEEEEcCccccccc--ccCCceEEEecC----CCCCcCcc
Confidence 999983 23566 776555544433 34554443
No 35
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=3.2e-32 Score=256.70 Aligned_cols=193 Identities=19% Similarity=0.227 Sum_probs=162.2
Q ss_pred CCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCC
Q 013780 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 270 (436)
Q Consensus 191 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~ 270 (436)
.+++++|+|||||||.||+|++||+++.+++......+.+... |++++.+|++|.+|+. .++.++..|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~--d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPG--TRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCC--CEEEEECChHHHHHHH-HHHHHHHhCcEEEecCcc
Confidence 4689999999999999999999999999988877776665444 9999999999999996 678888899998887532
Q ss_pred CHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCC
Q 013780 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCA 350 (436)
Q Consensus 271 ~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~ 350 (436)
...++.++++++|++.++|+++..|++..... .++++||.+++||+++++++.+++++. ++++++ .||+||+++
T Consensus 113 --~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~-~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~-~YG~TEt~~ 186 (358)
T 4gs5_A 113 --ANPLAGLDHADFDFVAMVPMQLQSILENSATS-GQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQ-SYGMTETVS 186 (358)
T ss_dssp --SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTG-GGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEE-EEECGGGSS
T ss_pred --ccHHHHHHHhCCeEEEcChHHHHHhhcccccc-ccCCcceEEEEcccCCCchheeccccc--CceEEe-ccccccccc
Confidence 23467789999999999999999999876543 478999999999999999999999875 599999 999999988
Q ss_pred cccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccC
Q 013780 351 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405 (436)
Q Consensus 351 ~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g 405 (436)
.++..... ....+++|.+.|++++.+.+ .|||+++|+....|
T Consensus 187 ~~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~~~g 228 (358)
T 4gs5_A 187 HVALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVTNGQ 228 (358)
T ss_dssp EEEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGGTTC
T ss_pred eeeccccc--ccccceeeccCCCeEEEecC-----------cCceEEecccccCc
Confidence 77766544 45678899999999988755 39999998754444
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=4.1e-31 Score=257.22 Aligned_cols=223 Identities=21% Similarity=0.219 Sum_probs=176.1
Q ss_pred CCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC-CCCcEEEechhH-HHHHHHHHHHHhhccCCcEEE
Q 013780 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV 265 (436)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~v~ 265 (436)
...++++++++|||||||.||+|+++|+++...+..........+ ..++++++.+|+ .|..++. ..+.++..|++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCMVV 166 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCEEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCEEE
Confidence 346788999999999999999999999999876654443222222 233899999998 4555553 6788899999999
Q ss_pred EcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccC--CCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343 (436)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y 343 (436)
+.+.+++..+++.|+++++|+++++|+++..|++.......+ +++||.+++||+++++++.+++++.|+ +++++ .|
T Consensus 167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~-~Y 244 (443)
T 2y4o_A 167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG-IDALD-IY 244 (443)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEE-EE
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEe-cc
Confidence 998889999999999999999999999999998865443333 589999999999999999999999986 99999 99
Q ss_pred cccccCCc-ccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780 344 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE 422 (436)
Q Consensus 344 G~tE~~~~-~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~ 422 (436)
|+||+++. +...... ....++.|.++++++|+|+++|+++++|+.|||+++|.. . +.+
T Consensus 245 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t-~-------------~~~--- 303 (443)
T 2y4o_A 245 GLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT-K-------------EAM--- 303 (443)
T ss_dssp EETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS-C-------------SSS---
T ss_pred CchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC-c-------------ccC---
Confidence 99998543 3333221 111255677899999999878999999999999999842 1 112
Q ss_pred ccCCeeecCCCCC
Q 013780 423 HTDSFIRGKDQQT 435 (436)
Q Consensus 423 ~~~~~~~tgD~~~ 435 (436)
.++||+|||+|+
T Consensus 304 -p~~~y~TGDl~~ 315 (443)
T 2y4o_A 304 -PVIRYRTRDLTA 315 (443)
T ss_dssp -CCSSEEEEEEEC
T ss_pred -hhheeecCCEEE
Confidence 356888888764
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.98 E-value=0.0028 Score=62.11 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=50.1
Q ss_pred CCc---ceEEEecCCCCcHHHHHHHHhhCCCCeee-eccccccccCCcccccCCCCCccCcCccccc-cCC-cEEEEEeC
Q 013780 308 ISS---LKLVGSGAAPLGKELMEDCQKNIPGATIF-QVGYGMTETCAPISLENPLVGVRRSGSAGTL-VAG-VEAQIVSV 381 (436)
Q Consensus 308 l~~---lr~i~~gg~~l~~~~~~~~~~~~~~~~i~-~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p-~~~-~~v~i~d~ 381 (436)
+++ +.++..||- ..-...+++.+|+.+++ . .|++||. .+.....+. ..+...+.. +|+ +-.+.++.
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~-~Y~ASEg-~~gi~~~p~---~~~~~~~~~L~~~~~ffEFip~ 367 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVST-TYGSSET-TFGINLDPL---CKPEDVSYTFMPNMSYFEFIPM 367 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECC-EEECSSC-EEEECSCTT---SCGGGCCEEECTTSSEEEEEEC
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccC-ccccccc-eeeeccCCC---CCcccCceeecCCcEEEEEEec
Confidence 566 555666773 44445555666678888 7 9999994 333322221 122233332 222 45567653
Q ss_pred CCC--------ccCCCCCceEEEEecCC
Q 013780 382 DTL--------KPLPPNQLGEIWVRGPN 401 (436)
Q Consensus 382 ~~~--------~~~~~g~~Gel~v~g~~ 401 (436)
+.. ..+..|+.+||.+++-.
T Consensus 368 ~~~~~~~~v~l~eVe~G~~YelViTt~~ 395 (581)
T 4eql_A 368 DGGDKNDVVDLEDVKLGCTYEPVVTNFA 395 (581)
T ss_dssp STTCCSSCEEGGGCCTTCEEEEEEECSS
T ss_pred cccCCCcEeCHHHcCCCceEEEEEeecc
Confidence 221 34678999999998864
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=96.73 E-value=0.0044 Score=60.86 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=26.8
Q ss_pred CCCCCeEEEEcCCCCC-CCCcceehhhhHHHh
Q 013780 189 VKQTDAAALLYSSGTT-GVSKGVILTHKNFIA 219 (436)
Q Consensus 189 ~~~~~~a~i~~TSGtT-G~pK~v~~t~~~l~~ 219 (436)
..++.+..+..||||| |.||-+++|.+.+..
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 3667788999999999 789999999998765
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=96.06 E-value=0.021 Score=55.81 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCCCCCeEEEEcCCCCC-CCCcceehhhhHHHh
Q 013780 188 SVKQTDAAALLYSSGTT-GVSKGVILTHKNFIA 219 (436)
Q Consensus 188 ~~~~~~~a~i~~TSGtT-G~pK~v~~t~~~l~~ 219 (436)
-..++.+.....||||| |.+|-+++|.+.+..
T Consensus 94 iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 94 ILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred ccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 34667788899999999 779999999998765
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=94.24 E-value=0.33 Score=46.03 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=71.6
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEE
Q 013780 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (436)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 130 (436)
..+|.+.+...+..+++.+...|+.++|++...++.+. ..+...++++..|+.+++++. .+.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 56899999888888888887889999999999888642 334557888999999998765 478888999999999999
Q ss_pred EEccchHHHHh
Q 013780 131 ITVPELWDKVK 141 (436)
Q Consensus 131 i~~~~~~~~~~ 141 (436)
+..+..+..+.
T Consensus 187 ~~~Ps~~~~l~ 197 (437)
T 2y27_A 187 MVTPSYMLSIA 197 (437)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99887766543
No 41
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=93.77 E-value=0.33 Score=45.99 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=72.4
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--CcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEE
Q 013780 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (436)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 130 (436)
..+|.+.+...+..+++.+...|+.++|++....+-+ ...+..+++++..|+..++.++. ..+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 5689999999888888888888999999999988753 33445678889999999987654 67888899999999999
Q ss_pred EEccchHHHHh
Q 013780 131 ITVPELWDKVK 141 (436)
Q Consensus 131 i~~~~~~~~~~ 141 (436)
+..+..+..+.
T Consensus 183 ~~~P~~~~~l~ 193 (436)
T 3qov_A 183 HAIPSYAIRLA 193 (436)
T ss_dssp ECCHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99887766553
No 42
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.43 E-value=0.53 Score=44.68 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=71.4
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEE
Q 013780 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (436)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 130 (436)
..+|.+.+...+..+++.+...|+.++|++...++-+. ..+...++++..|+..++++.. +.+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 56899999888888888887889999999999888643 3345678888999999887654 78888899999999999
Q ss_pred EEccchHHHH
Q 013780 131 ITVPELWDKV 140 (436)
Q Consensus 131 i~~~~~~~~~ 140 (436)
+..+..+..+
T Consensus 189 ~~~Ps~~~~l 198 (443)
T 2y4o_A 189 LVTPSYMLNL 198 (443)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9988776554
No 43
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=88.29 E-value=4.8 Score=38.66 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=76.2
Q ss_pred cCCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCc-HHHHHHHHHHhCCeEeecC
Q 013780 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTAN 110 (436)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~-~~~~~lA~~~~G~~~v~l~ 110 (436)
..++.+|++..-+| ..+|.+.+...+..+... .++.++|++...+|-... .+..+++++..|+..++.+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 35677777644323 578999888777666554 488999999998886533 2344677888999988875
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEccchHHHHhhc
Q 013780 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143 (436)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 143 (436)
..+.+.+...+++.++.+++..+..+..+...
T Consensus 237 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 268 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERITHISLVPQTLNWLMQQ 268 (501)
T ss_dssp -SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence 46888999999999999999998877766543
No 44
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=87.63 E-value=1.8 Score=39.82 Aligned_cols=88 Identities=9% Similarity=0.098 Sum_probs=65.2
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCc--HHHHHHHHHHhCCeEeecCCCCCHH--------------
Q 013780 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVS-------------- 116 (436)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 116 (436)
..+|.+.+...+..+++.+...|+.++|++..++|-+.+ .+...++++..|+.+++. .+++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 568999998888877777888899999999999886332 334455568889955543 33444
Q ss_pred ---------HHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 117 ---------ELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 117 ---------~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
.+...+++.++.+++..+..+..+.+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 66668899999999998877766543
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=86.70 E-value=8.3 Score=37.40 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=73.4
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEeec
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA 109 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~l 109 (436)
.|+.+|++..-+| ..+|.+.+...+..+... .++.++|++...+|-+..+-. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4667777643222 578999887776665554 478899999988886654433 478889999999877
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (436)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (436)
+ ....+.+...+++.++.+++..+..+..+.
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 287 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWM 287 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHH
Confidence 5 467888999999999999999887766553
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=85.96 E-value=4.1 Score=39.75 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=73.5
Q ss_pred CceEEEeCCC-------CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEeecCCC
Q 013780 42 SKLALIDADS-------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP--ICFLGVIAIGAIASTANPV 112 (436)
Q Consensus 42 ~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v~l~~~ 112 (436)
+.+|++..-+ +..+|.+.+...+......+...++.++|++...+|-...+- ..+++++ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 7777764422 357999988877666555443368889999988888654443 2356667 999998875 5
Q ss_pred CCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 113 YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
.+.+.+...+++.++.+++..+..+..+..
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 688899999999999999999887776644
No 47
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=85.73 E-value=8.4 Score=37.42 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=73.5
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEeec
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA 109 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~l 109 (436)
.++.+|++..-+| ..+|.+.+...+..++..+ ++.++|++...+|....+-. .+++++..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC---GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh---CCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4567777643223 5789999887777766544 78999999999887655543 378888899998877
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEccchHHHH
Q 013780 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (436)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 140 (436)
+ ......+...+++.++.++...+..+..+
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 295 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMW 295 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHH
Confidence 5 45778888999999999999988766554
No 48
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=83.62 E-value=11 Score=36.31 Aligned_cols=98 Identities=9% Similarity=0.091 Sum_probs=72.0
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHH--HHHHHHhCCeEeecC
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC--FLGVIAIGAIASTAN 110 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~--~lA~~~~G~~~v~l~ 110 (436)
.|+.+|++..-+| ..+|.+.+...+..++..+ ++.++|++...+|-...+-.. +++++ .|+..+..+
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~ 243 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 243 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC
Confidence 3566776533222 6799999888777766554 789999999988876544333 44455 899988774
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
....+.+...+++.++.++...+..+..+..
T Consensus 244 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 244 -QFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp -SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 5788899999999999999999877765543
No 49
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=82.96 E-value=7.6 Score=35.40 Aligned_cols=84 Identities=8% Similarity=0.088 Sum_probs=61.0
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEE
Q 013780 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (436)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi 131 (436)
..+|.+.+...+..++.. .+++++|++..++|-...+ +..++..+..|+..+..++.... ...+++.++.++.
T Consensus 55 V~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGLDHADFDFVA 128 (358)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEE
T ss_pred EEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHHHHhCCeEEE
Confidence 679999988777666654 4789999999988865433 44556677888888877765432 3457788899999
Q ss_pred EccchHHHHhh
Q 013780 132 TVPELWDKVKD 142 (436)
Q Consensus 132 ~~~~~~~~~~~ 142 (436)
..+..+..+..
T Consensus 129 ~~P~~l~~ll~ 139 (358)
T 4gs5_A 129 MVPMQLQSILE 139 (358)
T ss_dssp ECHHHHHHHHH
T ss_pred cChHHHHHhhc
Confidence 88877666543
No 50
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=80.86 E-value=7 Score=37.61 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=73.7
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCC
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 111 (436)
.++.+|++..-+| ..+|.+.+...+...... .++.++|++...+|-+..+ +..+++++..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 4566676533222 578998888776655544 4789999999999876433 4557888999999998865
Q ss_pred C--CCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780 112 V--YTVSELSKQVKDSNPKLVITVPELWDKVK 141 (436)
Q Consensus 112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (436)
. ...+.+...+++.++.+++..+.....+.
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 250 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCL 250 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 3 46778888999999999999988776654
No 51
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=80.58 E-value=8.2 Score=37.10 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=73.5
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCC
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 111 (436)
.++.++++..-+| ..+|.+.+...+..+... .++.++|++....|-+..+ +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 3566666533222 578998888777665554 4788999999998876443 4457888999999888765
Q ss_pred C--CCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 112 V--YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
. ...+.+...+++.++.+++..+..+..+..
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 250 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLM 250 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 3 466788889999999999999887776543
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=80.45 E-value=9.2 Score=37.18 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=73.2
Q ss_pred CCceEEEeCCC-------CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCCC
Q 013780 41 SSKLALIDADS-------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPV 112 (436)
Q Consensus 41 p~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~~ 112 (436)
++.+|++..-+ +..+|.+.+..........+...++.+++++...+|-...+ +...++++..|+..+.++ .
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~ 267 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R 267 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence 35566653322 26789888877665555444446788999999888865432 345677888999988875 5
Q ss_pred CCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 113 YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
...+.+...+++.++.+++..+..+..+..
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAK 297 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCeEEEeCcHHHHHHHh
Confidence 678889999999999999999887766543
No 53
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=79.51 E-value=22 Score=35.01 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=72.4
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEeec
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA 109 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~l 109 (436)
.|+.+|++..-+| ..+|.+.+...+......+ ++.++|++...+|-+..+-. .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 3567777643222 6789998887776665544 78899999999886655443 378888999998877
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEccchHHHH
Q 013780 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (436)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 140 (436)
+. .....+...+++.++.++...+..+..+
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 54 5777888899999999999988766554
No 54
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=78.64 E-value=7.6 Score=36.86 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCC
Q 013780 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK 269 (436)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~ 269 (436)
.++.+|++.........-....+|++.+...+..++..+.-.+.++|++...++-..-+ ...+++++..|+..+...+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEY--VVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHH--HHHHHHHHHhCcEEEeeCC
Confidence 46788887654211111133679999999999988887766554458877777665433 3468899999999887743
Q ss_pred ----CCHHHHHHHHHHhcceEEEecHHHHHHHHh
Q 013780 270 ----FDIEMALRAIEKYRVTVWWVVPPIILALAK 299 (436)
Q Consensus 270 ----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~ 299 (436)
.....+...+++.++..++..+.....+.+
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 457889999999999999998877666544
No 55
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=78.63 E-value=10 Score=37.17 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=73.2
Q ss_pred cCCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH--HHHHHHHhCCeEeec
Q 013780 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTA 109 (436)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~l 109 (436)
..|+.+|++..-+| ..+|.+.+...+..+... .++.++|++...+|-...+-. .+++++..|+..+..
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 34677777643222 679999998887776654 478999999999987765443 378889999999987
Q ss_pred CCCC---CHHHHHHHHHhcCCcEEEEccchHHHH
Q 013780 110 NPVY---TVSELSKQVKDSNPKLVITVPELWDKV 140 (436)
Q Consensus 110 ~~~~---~~~~~~~~l~~~~~~~vi~~~~~~~~~ 140 (436)
++.. ....+...+++.++.++...+..+..+
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 274 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYC 274 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHH
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHH
Confidence 6532 557788889999999998877665544
No 56
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=77.95 E-value=12 Score=35.98 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=72.4
Q ss_pred cCCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEe
Q 013780 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGI--TKKDVVLIFAPNSIHFP--ICFLGVIAIGAIAS 107 (436)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv--~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v 107 (436)
..|+.+|++..-+| ..+|.+.+...+..+... .++ .++|++...+|-...+- ..+++++..|+..+
T Consensus 150 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 226 (504)
T 1t5h_X 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQ---VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYV 226 (504)
T ss_dssp CCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHT---TCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEE
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHh---hCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEE
Confidence 34677777643223 568888887766655443 466 78898888888665443 34788889999998
Q ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (436)
Q Consensus 108 ~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (436)
..+. .....+...+++.++.+++..+..+..+.
T Consensus 227 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 259 (504)
T 1t5h_X 227 VVEE-FRPVDALQLVQQEQVTSLFATPTHLDALA 259 (504)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHH
T ss_pred eCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHH
Confidence 8754 67888889999999999999988776654
No 57
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=76.68 E-value=21 Score=34.77 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH--HHHHHHHhCCeEeecC
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTAN 110 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~l~ 110 (436)
.++.+|++..-+| ..+|.+ +....... .....++.++|++....|-+..+-. .+++.+..|+..+..+
T Consensus 204 ~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 204 GSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp BTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 4567777643222 568887 43311111 1145688999999988887655433 4678888999988876
Q ss_pred C-CCCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 111 P-VYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 111 ~-~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
. .++...+...+++.++.+++..+..+..+..
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 313 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHh
Confidence 4 6788899999999999999999888777654
No 58
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=76.33 E-value=12 Score=36.30 Aligned_cols=99 Identities=9% Similarity=0.090 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCC-CcEEEechhHHHHHHHHHHHHhhccCCcEEEEcC
Q 013780 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL-DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (436)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~ 268 (436)
.++.+|++....| -.+|++.+...+..++..+.-.+.+ +|++...++-...+ ...+++++..|+..+...
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF--VLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCEEeccC
Confidence 5678887753322 3589999999888888777654433 37777777665433 346889999999988884
Q ss_pred -CCCHHHHHHHHHHhcceEEEecHHHHHHH
Q 013780 269 -KFDIEMALRAIEKYRVTVWWVVPPIILAL 297 (436)
Q Consensus 269 -~~~~~~~~~~l~~~~~t~l~~~p~~~~~l 297 (436)
...+..+...++..++.+++.....+..+
T Consensus 106 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 106 PFSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TTCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 56889999999999999999887654443
No 59
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=75.53 E-value=17 Score=35.23 Aligned_cols=106 Identities=8% Similarity=-0.016 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCC-CcEEEechhHHHHHHHHHHHHhhccCCcEEEEcC
Q 013780 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL-DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (436)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~ 268 (436)
.++.+|++....+..+. ..-.+|++.+...+..++..+.-.+.+ +|++...++-...+ ...+++++..|+..+...
T Consensus 32 ~p~~~A~~~~~~~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSE-FPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY--VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCS-SCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCccccc-ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEEccC
Confidence 35778877654221111 124689999999888888777554433 37877777665433 346889999999998884
Q ss_pred -CCCHHHHHHHHHHhcceEEEecHHHHHHHH
Q 013780 269 -KFDIEMALRAIEKYRVTVWWVVPPIILALA 298 (436)
Q Consensus 269 -~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~ 298 (436)
......+...+++.++..++..+.....+.
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 568899999999999999999877665443
No 60
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=74.93 E-value=16 Score=35.30 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=70.0
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH-HHHHHHHhCCeEeecCC
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI-CFLGVIAIGAIASTANP 111 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~-~~lA~~~~G~~~v~l~~ 111 (436)
.++.++++..-+| ..+|.+.+...+.... .....++.++|++...+|-...+.. ..++++..|+..+..++
T Consensus 174 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~ 252 (541)
T 1v25_A 174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 252 (541)
T ss_dssp CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred CCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC
Confidence 3466666532122 5688888764433211 1123578899999988886543332 45778889999998877
Q ss_pred CCCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780 112 VYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (436)
Q Consensus 112 ~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (436)
..+.+.+...+++.++.+++..+..+..+.
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 282 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLALA 282 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHHH
Confidence 678899999999999999999887766543
No 61
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=71.70 E-value=13 Score=35.94 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCceEEEeCCCC-------ccccHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH--HHHHHHHhCCeEeec
Q 013780 40 YSSKLALIDADSD-------ESLSFSQF-KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTA 109 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el-~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~l 109 (436)
.|+.++++..-+| ..+|.+.+ ....... ....++.++|++...+|-...+-. .++..+..|+..+.+
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 181 GCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp CTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred CCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 4567777643222 56888877 3222111 123578899999988887655433 456788899999988
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
++..+.+.+...+++.++.+++..+..+..+..
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANMLV 290 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 777788999999999999999999887766543
No 62
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=70.69 E-value=41 Score=32.02 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=67.2
Q ss_pred CCCceEEEeC---CCC----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH-HHHHHHHHhCCeEeecCC
Q 013780 40 YSSKLALIDA---DSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP-ICFLGVIAIGAIASTANP 111 (436)
Q Consensus 40 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~-~~~lA~~~~G~~~v~l~~ 111 (436)
.++.++++.. -+| ..+|.+.+...+..+... .++.++|++...+|-...+- ...+.+...|...+.+.
T Consensus 158 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~- 233 (509)
T 3ivr_A 158 GAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA---WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA- 233 (509)
T ss_dssp CTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-
Confidence 4566666532 222 678999888777666554 47899999999988654433 23344344444444444
Q ss_pred CCCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 112 ~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
..+.+.+...+++.++.+++..+..+..+..
T Consensus 234 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 264 (509)
T 3ivr_A 234 KFDPAQAARDIEAHKVTVMAEFAPMLGNILD 264 (509)
T ss_dssp SCCHHHHHHHHHHHTCCEEEEETTHHHHHHH
T ss_pred ccCHHHHHHHHHHHCCcEEEecHHHHHHHHh
Confidence 6788999999999999999988877666543
No 63
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=69.45 E-value=39 Score=32.24 Aligned_cols=99 Identities=12% Similarity=0.233 Sum_probs=70.5
Q ss_pred cCCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH--HHHHHHHHHhCCeEeec
Q 013780 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTA 109 (436)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~--~~~~lA~~~~G~~~v~l 109 (436)
..++.+|++..-+| ..+|.+.+...+..+...+ ++.++|++...+|....+ +..+++.+..|+..+..
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 34567777533222 6799999988887776655 788999988888764333 33478889999998877
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
+ ....+.+...+ +.++.+++..+..+..+..
T Consensus 229 ~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 229 G-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp S-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 4 46667777777 6789999988876655543
No 64
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=67.30 E-value=29 Score=34.60 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh-ccCC-CCcEEEechhHHHHHHHHHHHHhhccCCcEEEEc
Q 013780 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGE-LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (436)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~ 267 (436)
.++.+|++.... .+| ....+|++.+...+..++..+. -.+. ++|++...+|..--+ ...+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEee
Confidence 467788876432 122 2346899999999988887775 4333 348888888876543 34788999999988877
Q ss_pred -CCCCHHHHHHHHHHhcceEEEecHH
Q 013780 268 -GKFDIEMALRAIEKYRVTVWWVVPP 292 (436)
Q Consensus 268 -~~~~~~~~~~~l~~~~~t~l~~~p~ 292 (436)
+.+.+..+...+++.++.++++...
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 5678999999999999999998643
No 65
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=66.26 E-value=23 Score=31.91 Aligned_cols=65 Identities=8% Similarity=-0.080 Sum_probs=48.6
Q ss_pred HHhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 013780 71 FRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (436)
Q Consensus 71 L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 135 (436)
+.+.| +++|+.|.+....+=.-..+.++|..+|..++.+-|..........++..++++++++..
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34455 488888655555566777888888888998877766655566677889999999999764
No 66
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=65.21 E-value=31 Score=33.55 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred cCCCceEEEeCCC-------CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCC-cHHHHHHHHHHhCCeEeecC
Q 013780 39 SYSSKLALIDADS-------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTAN 110 (436)
Q Consensus 39 ~~p~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~-~~~~~~lA~~~~G~~~v~l~ 110 (436)
..|+.+|++..-+ +..+|.+.+...... ....++.++|++..++|-+. -+...+++++..|+..+..+
T Consensus 211 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~ 286 (570)
T 4gr5_A 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQS 286 (570)
T ss_dssp CCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECS
T ss_pred CCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 3467777764422 357888877433221 23457889999999988753 45566788889999888776
Q ss_pred C-CCCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 111 P-VYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 111 ~-~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
. ......+...+++.++.++...+..+..+..
T Consensus 287 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 319 (570)
T 4gr5_A 287 GQNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319 (570)
T ss_dssp SSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 4 4577889999999999999999877766543
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=64.71 E-value=32 Score=33.41 Aligned_cols=97 Identities=10% Similarity=0.063 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCC-CcEEEechhHHHHHHHHHHHHhhccCCcEEEEcC
Q 013780 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL-DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (436)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~ 268 (436)
.++.+|++.. .-.+|++.+...+..++..+.-.+.+ +|++...++-..-+ ...+++++..|+..+...
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL--FIGILAVLKAGGAYVPID 120 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEEeC
Confidence 3567777641 23689999998888877766544333 37777776655433 346889999999988884
Q ss_pred -CCCHHHHHHHHHHhcceEEEecHHHHHHH
Q 013780 269 -KFDIEMALRAIEKYRVTVWWVVPPIILAL 297 (436)
Q Consensus 269 -~~~~~~~~~~l~~~~~t~l~~~p~~~~~l 297 (436)
.+.+..+...+++.++.+++..+.....+
T Consensus 121 ~~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 121 IEYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 56889999999999999999988655443
No 68
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=62.94 E-value=36 Score=33.83 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=69.3
Q ss_pred CCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEeecCC
Q 013780 41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP--ICFLGVIAIGAIASTANP 111 (436)
Q Consensus 41 p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v~l~~ 111 (436)
++.++++..-+| ..+|.+.+......... ...+++++|++....+-+..+- ..+++.+..|+..+..+.
T Consensus 255 ~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~ 332 (652)
T 1pg4_A 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEG 332 (652)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECS
T ss_pred CCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECC
Confidence 566676533222 56787776544322211 2357889999988887765543 346788999999998864
Q ss_pred C---CCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 112 V---YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 112 ~---~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
. .+.+.+..++++.++.++++.+..+..+..
T Consensus 333 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 366 (652)
T 1pg4_A 333 VPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366 (652)
T ss_dssp CTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence 2 366788899999999999999887766543
No 69
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=61.36 E-value=35 Score=33.66 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=70.3
Q ss_pred CCCceEEEeCCC-------CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCC
Q 013780 40 YSSKLALIDADS-------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (436)
Q Consensus 40 ~p~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 111 (436)
.|+.+|++..-+ +..+|.+.+...+.. ....++.++|++....+-+.+. +..++..+..|+..++.+.
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 367777753322 257888877543322 2346789999999999876544 3457888889998887642
Q ss_pred -CCCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780 112 -VYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (436)
Q Consensus 112 -~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (436)
..+.+.+...+++.++.+++..+..+..+.
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~ 268 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLV 268 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHH
Confidence 467889999999999999999887766653
No 70
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=60.02 E-value=37 Score=33.18 Aligned_cols=100 Identities=6% Similarity=0.033 Sum_probs=68.4
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH--HHHHHHHhCCeEeecC
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTAN 110 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~l~ 110 (436)
.++.+|++..-+| ..+|...+..... ......++.+++++....+....... .+++.+..|+..++.+
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 299 (580)
T 3etc_A 223 KNEDICLVYFSSGTAGFPKMVEHDNTYPLGHIL---TAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYD 299 (580)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEETTHHHHHHH---HHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCccEEEeccHHHHHHHH---HHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEec
Confidence 4567777533222 3455554332222 22223578899988888877655433 4688899999998875
Q ss_pred -CCCCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 111 -PVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 111 -~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
..+..+.+...+++.++.+++..+..+..+..
T Consensus 300 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 332 (580)
T 3etc_A 300 YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK 332 (580)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHh
Confidence 46788899999999999999999887776654
No 71
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=58.93 E-value=31 Score=31.15 Aligned_cols=69 Identities=17% Similarity=0.080 Sum_probs=52.7
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 013780 67 VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (436)
Q Consensus 67 la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 135 (436)
+.+...+--+++|.+..+....+=.-..+.++|.++|..++.+=|.....+....++..++++++++..
T Consensus 74 i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 74 ITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 333333323577876666777777888888999999999888877777777888999999999999753
No 72
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=58.71 E-value=34 Score=33.14 Aligned_cols=99 Identities=10% Similarity=0.096 Sum_probs=71.0
Q ss_pred CCCceEEEeCCC-------CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH--HHHHHHHHHhCCeEeecC
Q 013780 40 YSSKLALIDADS-------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTAN 110 (436)
Q Consensus 40 ~p~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~--~~~~lA~~~~G~~~v~l~ 110 (436)
.|+.++++..-+ +..+|.+.+...+..+... ..++.++|++...+|-...+ +..+++.+..|+..+.+.
T Consensus 174 ~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 174 VPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp CTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 367788875433 3678999887666554432 25789999999988876543 345677888898888775
Q ss_pred CC---CCHHHHHHHHHhcCCcEEEEccchHHHH
Q 013780 111 PV---YTVSELSKQVKDSNPKLVITVPELWDKV 140 (436)
Q Consensus 111 ~~---~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 140 (436)
+. .....+...+++.++.+++..+..+..+
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 284 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELC 284 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHH
Confidence 42 3556788899999999999888766544
No 73
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=57.59 E-value=45 Score=27.71 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhccCCcEEEEc-CCCCHHHHHHHHHHhcceEEEe--c----HHH--HHHHHhccccCccCCCcceEEE
Q 013780 245 FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWV--V----PPI--ILALAKNSLVRKFDISSLKLVG 315 (436)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~--~----p~~--~~~l~~~~~~~~~~l~~lr~i~ 315 (436)
.|..|....-...-..|-.++.. ....++.+++.+.++++.++.. + +++ +..+.+....... ..+++ ++
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~-~~~v~-v~ 181 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKL-RDSVK-CM 181 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTC-GGGSE-EE
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCC-CCCCE-EE
Confidence 56667664555555667777666 4568999999999999987776 2 221 2222222222211 02344 67
Q ss_pred ecCCCCcHHHHHH
Q 013780 316 SGAAPLGKELMED 328 (436)
Q Consensus 316 ~gg~~l~~~~~~~ 328 (436)
+||.+++++..++
T Consensus 182 vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 182 FGGAPVSDKWIEE 194 (215)
T ss_dssp EESSSCCHHHHHH
T ss_pred EECCCCCHHHHHH
Confidence 8899999876554
No 74
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=57.51 E-value=77 Score=30.18 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=71.1
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCC
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 111 (436)
.++.+|++..-+| ..+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+.++.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 4567777543223 6789998876655444321 25678889888887766443 4556778889999887765
Q ss_pred C--CCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780 112 V--YTVSELSKQVKDSNPKLVITVPELWDKVK 141 (436)
Q Consensus 112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (436)
. .....+...+...++.++...+.....+.
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 253 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHh
Confidence 4 36778888999999999999887766544
No 75
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=56.26 E-value=49 Score=32.00 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCCCCCCCC--cceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEc
Q 013780 190 KQTDAAALLYSSGTTGVS--KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (436)
Q Consensus 190 ~~~~~a~i~~TSGtTG~p--K~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~ 267 (436)
.++.+|++...+ ..+.. ..-.+|++.+...+..++..+.-.+.++|++...++-...+ ...+++++..|+..+..
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~~gd~V~i~~~n~~~~--~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIA--FAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHTTCSSCEEEEECCSCHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEec
Confidence 467788775432 22222 23568999999988888876655444458887777765543 34688999999998888
Q ss_pred -CCCCHHHHHHHHHHhcceEEEecH
Q 013780 268 -GKFDIEMALRAIEKYRVTVWWVVP 291 (436)
Q Consensus 268 -~~~~~~~~~~~l~~~~~t~l~~~p 291 (436)
+.+.+..+...++..++.+++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 456889999999999999887654
No 76
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=54.82 E-value=42 Score=35.24 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=72.2
Q ss_pred CCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCC-CcEEEechhHHHHHHHHHHHHhhccCCcEEEEc
Q 013780 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL-DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (436)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~ 267 (436)
..++.+|++...+| -.+|++.+...+..++..+.-.+.+ +|++...++-... +...+++++..|+..+..
T Consensus 73 ~~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 73 EFATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE--FVLSFLAASFRGATATAA 143 (979)
T ss_dssp GTTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH--HHHHHHHHHHHTCEEEEE
T ss_pred hCCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH--HHHHHHHHHHcCCEEEee
Confidence 35778888763322 4689999999888888776554433 3887777776543 334788999999998877
Q ss_pred -CCCCHHHHHHHHHHhcceEEEecHHHH
Q 013780 268 -GKFDIEMALRAIEKYRVTVWWVVPPII 294 (436)
Q Consensus 268 -~~~~~~~~~~~l~~~~~t~l~~~p~~~ 294 (436)
+.+.+..+...+++.++.+++..+...
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 467889999999999999999876544
No 77
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=54.30 E-value=31 Score=32.91 Aligned_cols=81 Identities=9% Similarity=0.018 Sum_probs=62.8
Q ss_pred ehhhhHHHhhhhhHHhhhhccCCC-CcEEEechhHHHHHHHHHHHHhhccCCcEEEEcC-CCCHHHHHHHHHHhcceEEE
Q 013780 211 ILTHKNFIAASLMISAHQELVGEL-DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWW 288 (436)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~ 288 (436)
.+|++.+...+..++..+.-.+.+ +|++...++-+..+ ...+++++..|+..+... ......+...+++.++.+++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA--LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 589999999888888777554433 37777777665433 346889999999988884 56889999999999999999
Q ss_pred ecHHH
Q 013780 289 VVPPI 293 (436)
Q Consensus 289 ~~p~~ 293 (436)
+.+..
T Consensus 106 ~~~~~ 110 (503)
T 4fuq_A 106 CDPSK 110 (503)
T ss_dssp ECGGG
T ss_pred ECchh
Confidence 87653
No 78
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=53.13 E-value=45 Score=29.87 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEcCCCC------cHHHHHHH-HHHhCCeEeecCCCC------------CHHHHHHHHHhcCCcEEEEcc
Q 013780 75 GITKKDVVLIFAPNSI------HFPICFLG-VIAIGAIASTANPVY------------TVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 75 gv~~gd~V~l~~~n~~------~~~~~~lA-~~~~G~~~v~l~~~~------------~~~~~~~~l~~~~~~~vi~~~ 134 (436)
-+++||+|+|+.|.+. +-+-.... +-..|..++.-+.-. .++++...+.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999763 11222222 234587776543221 146788888888999999984
No 79
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=48.60 E-value=50 Score=29.71 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEcCCCCc------HHHHHHHHH-HhCCeEeecCCCC------------CHHHHHHHHHhcCCcEEEEcc
Q 013780 75 GITKKDVVLIFAPNSIH------FPICFLGVI-AIGAIASTANPVY------------TVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 75 gv~~gd~V~l~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~~~~~l~~~~~~~vi~~~ 134 (436)
-+++||+|+|+.|.+.- -+-.....+ ..|..++.-+... .++++...+++-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998842 222222223 3588777532211 146777888888999999884
No 80
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=47.57 E-value=74 Score=28.22 Aligned_cols=64 Identities=20% Similarity=0.079 Sum_probs=45.1
Q ss_pred HhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 013780 72 RHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (436)
Q Consensus 72 ~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 135 (436)
.+.| +++|....+....+=.-..+.++|.++|..++.+-|..........++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3456 356643444455566667777888899998877666555566677889999999998864
No 81
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=47.56 E-value=62 Score=28.98 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEcCCCCcH------HHHHHHHH-HhCCeEeecCCCC------------CHHHHHHHHHhcCCcEEEEcc
Q 013780 75 GITKKDVVLIFAPNSIHF------PICFLGVI-AIGAIASTANPVY------------TVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 75 gv~~gd~V~l~~~n~~~~------~~~~lA~~-~~G~~~v~l~~~~------------~~~~~~~~l~~~~~~~vi~~~ 134 (436)
-+++||+|+|+.|.+.-. +-.....+ ..|..++.-+.-. .++++...+++-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 478999999999987521 22222223 3588777543211 146777888888899999974
No 82
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=47.11 E-value=42 Score=30.06 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=51.5
Q ss_pred ccccHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcE
Q 013780 53 ESLSFSQFKSIVIK---VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (436)
Q Consensus 53 ~~~Ty~el~~~~~~---la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 129 (436)
..+++.+....... ..+.|...++++|++|+|...-+.-..++.+|....|+.++.++. + ++-..+.+...++.
T Consensus 135 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~-~~r~~~~~~~Ga~~ 211 (348)
T 4eez_A 135 DGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--N-QDKLNLAKKIGADV 211 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--C-HHHHHHHHHTTCSE
T ss_pred CCCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--c-HHHhhhhhhcCCeE
Confidence 34677664433222 223455678999999999987666677777776666777766654 2 33345677888888
Q ss_pred EEEcc
Q 013780 130 VITVP 134 (436)
Q Consensus 130 vi~~~ 134 (436)
++...
T Consensus 212 ~i~~~ 216 (348)
T 4eez_A 212 TINSG 216 (348)
T ss_dssp EEEC-
T ss_pred EEeCC
Confidence 87543
No 83
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=45.94 E-value=61 Score=29.60 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=39.9
Q ss_pred cCCCCCCEEEEEcCCCCc------HHHHHHHHH-HhCCeEeecCCCC------------CHHHHHHHHHhcCCcEEEEcc
Q 013780 74 LGITKKDVVLIFAPNSIH------FPICFLGVI-AIGAIASTANPVY------------TVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 74 ~gv~~gd~V~l~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~~~~~l~~~~~~~vi~~~ 134 (436)
.-+++||+|+|++|.+.- -+-.....+ ..|..++.-+.-. .++++...+++-++++|+|..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 357899999999998752 222222223 3588877543211 135777778888899999984
No 84
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=45.23 E-value=80 Score=29.49 Aligned_cols=63 Identities=17% Similarity=0.050 Sum_probs=47.4
Q ss_pred HhcCC-CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 013780 72 RHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 72 ~~~gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (436)
.+.|+ ++|....+....+=.-..+.++|.++|..++.+-|..........++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45564 6775555555556677778888999999888776666666777889999999999974
No 85
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=44.99 E-value=55 Score=29.78 Aligned_cols=62 Identities=11% Similarity=0.001 Sum_probs=39.4
Q ss_pred HHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC-----CCHHHHHHHHHhcC--CcEEEEc
Q 013780 69 HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSN--PKLVITV 133 (436)
Q Consensus 69 ~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~~~~~l~~~~--~~~vi~~ 133 (436)
..|...++++||.|.+-.+.... ...++...|+.++.++.+ .+.+.++..+..-+ .++|+..
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHcCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 33445578899998876554333 345567889887776543 36778887774334 6666643
No 86
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=42.63 E-value=87 Score=28.14 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=49.2
Q ss_pred ccccHHHHHHHH--HHHH-HHHHh-cCCCCCCEEEEEcCCC-CcHHHHHHHHHHhCCeE-eecCCCCCHHHHHHHHHhcC
Q 013780 53 ESLSFSQFKSIV--IKVS-HSFRH-LGITKKDVVLIFAPNS-IHFPICFLGVIAIGAIA-STANPVYTVSELSKQVKDSN 126 (436)
Q Consensus 53 ~~~Ty~el~~~~--~~la-~~L~~-~gv~~gd~V~l~~~n~-~~~~~~~lA~~~~G~~~-v~l~~~~~~~~~~~~l~~~~ 126 (436)
..+++.+..... -..| +.|.+ .++++|++|+|....+ +-.+++.+| ...|+.. +.++.....++....++..+
T Consensus 138 ~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqla-k~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (357)
T 1zsy_A 138 SDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIA-AALGLRTINVVRDRPDIQKLSDRLKSLG 216 (357)
T ss_dssp SSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEECCCSCHHHHHHHHHHTT
T ss_pred CCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHH-HHcCCEEEEEecCccchHHHHHHHHhcC
Confidence 346777654321 1122 23434 4799999999998754 555555554 4578854 44445444455556778899
Q ss_pred CcEEEEc
Q 013780 127 PKLVITV 133 (436)
Q Consensus 127 ~~~vi~~ 133 (436)
++.++..
T Consensus 217 a~~vi~~ 223 (357)
T 1zsy_A 217 AEHVITE 223 (357)
T ss_dssp CSEEEEH
T ss_pred CcEEEec
Confidence 9988854
No 87
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=41.77 E-value=1.1e+02 Score=26.85 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=44.2
Q ss_pred HHhcCC-CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 013780 71 FRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (436)
Q Consensus 71 L~~~gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 135 (436)
+.+.|. ++|+.|.. ...+=.-..+.++|...|..++.+-|..........++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344453 66666555 44455566667777899998877666555556667888999999999863
No 88
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=41.54 E-value=79 Score=34.45 Aligned_cols=99 Identities=12% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH-HHHHHHHHhCCeEeecCC
Q 013780 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP-ICFLGVIAIGAIASTANP 111 (436)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~-~~~lA~~~~G~~~v~l~~ 111 (436)
.|+.+|++..-+| ..+|.+.+... .......++.++|++..+.+-+.+.. .-+++.+..|+..+..++
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 4677777633222 56888877532 12223468889999998888776544 447788889999988876
Q ss_pred C--CCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780 112 V--YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (436)
Q Consensus 112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (436)
. .+.+.+...+++.++.+++..+..+..+..
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~ 713 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLTD 713 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHh
Confidence 3 567889999999999999998877766543
No 89
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=40.56 E-value=1.2e+02 Score=27.58 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHhc--CCcEEEEcc
Q 013780 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDS--NPKLVITVP 134 (436)
Q Consensus 71 L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~~--~~~~vi~~~ 134 (436)
+...++++||.|.+..+...... .++...|+.++.++.+ .+.++++..++.. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 33345788999888777655443 3445578887776543 3567888877764 567777653
No 90
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=40.34 E-value=77 Score=27.97 Aligned_cols=76 Identities=22% Similarity=0.215 Sum_probs=47.7
Q ss_pred ccccHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEcCCC-CcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCc
Q 013780 53 ESLSFSQFKSIVIK---VSHSFRHLGITKKDVVLIFAPNS-IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128 (436)
Q Consensus 53 ~~~Ty~el~~~~~~---la~~L~~~gv~~gd~V~l~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 128 (436)
..+++.+....... ..+.|...++++|++|+|..-.+ +-..++.+ +...|+.++.+. +.++ ...++..+++
T Consensus 124 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~-a~~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 124 EKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQL-AKQKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHH-HHHcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 45677775443222 22344567899999999987444 55554444 456798766553 3444 5667788888
Q ss_pred EEEEc
Q 013780 129 LVITV 133 (436)
Q Consensus 129 ~vi~~ 133 (436)
.++..
T Consensus 199 ~~i~~ 203 (321)
T 3tqh_A 199 QCINY 203 (321)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 77743
No 91
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=39.41 E-value=1.1e+02 Score=27.35 Aligned_cols=62 Identities=13% Similarity=-0.023 Sum_probs=43.0
Q ss_pred hcCC-CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 013780 73 HLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (436)
Q Consensus 73 ~~gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 135 (436)
+.|. ++|+.|.... .+=.-..+.++|...|..++.+-|..........++..++++++++..
T Consensus 71 ~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 71 KDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3453 6777655554 355555666777889988777666555556677889999999999863
No 92
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=39.12 E-value=51 Score=22.23 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
..+.+.+|.+ .+.+.++.+++.|.++|........+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4455655543 344446677888888888877777777777777753
No 93
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=37.96 E-value=1.9e+02 Score=25.20 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=42.6
Q ss_pred HhcC-CCCCC--EEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 013780 72 RHLG-ITKKD--VVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (436)
Q Consensus 72 ~~~g-v~~gd--~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 135 (436)
.+.| +++|+ .|.. ...+=.-..+.++|.+.|..++.+-|..........++..++++++++..
T Consensus 52 ~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 52 EERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445 46666 4433 44445555666777889998777655544556677889999999998864
No 94
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=37.71 E-value=1.1e+02 Score=27.14 Aligned_cols=77 Identities=9% Similarity=0.140 Sum_probs=48.9
Q ss_pred ccccHHHHHHHHH---HHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcE
Q 013780 53 ESLSFSQFKSIVI---KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (436)
Q Consensus 53 ~~~Ty~el~~~~~---~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 129 (436)
..+++.+...... ...+.|...++++|++|+|...-.+-..++.+|- ..|+.++.++. +.+. ...++..+++.
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAK-LNLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHH-HHHHHHcCCCE
Confidence 4577777542221 1234455668999999999887556666555554 57997766644 3333 34567788888
Q ss_pred EEEc
Q 013780 130 VITV 133 (436)
Q Consensus 130 vi~~ 133 (436)
++..
T Consensus 214 ~i~~ 217 (340)
T 3s2e_A 214 AVNA 217 (340)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7754
No 95
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=37.49 E-value=1.6e+02 Score=26.24 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHhcCCcEEEEc
Q 013780 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~~~~~~vi~~ 133 (436)
++||.|++..+....+.....++...|+.++.++.+ .+.++++..++. ++++|+.+
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 466766654443333333333334557666555432 234555555432 44555543
No 96
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=36.92 E-value=1.2e+02 Score=26.57 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=42.9
Q ss_pred HhcCC-CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 013780 72 RHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (436)
Q Consensus 72 ~~~gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 135 (436)
.+.|. ++|+.|.. ...+=.-..+.++|...|..++.+-|..........++..++++++++..
T Consensus 57 ~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 57 EKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34453 56665554 44445556667777889998777655544455667789999999999864
No 97
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=36.04 E-value=1.6e+02 Score=25.65 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=43.9
Q ss_pred HhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 013780 72 RHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 72 ~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (436)
.+.| +++|+.|.... .+=.-..+.++|.+.|..++.+-|..........++..++++++++.
T Consensus 53 ~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 53 EKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 3445 36677665554 45555666777789999887766665556667788999999999985
No 98
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=33.77 E-value=1.1e+02 Score=28.52 Aligned_cols=25 Identities=8% Similarity=-0.128 Sum_probs=14.0
Q ss_pred HHHHHHHHhhCCCCeeeecccccccc
Q 013780 323 KELMEDCQKNIPGATIFQVGYGMTET 348 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~i~~~~YG~tE~ 348 (436)
.+..+++.+.+.-..+.. .+|..|+
T Consensus 357 ~~~~~~~~~~l~~~~~~~-s~G~~~s 381 (430)
T 3ri6_A 357 KEASYRFMDALKLIRRAT-NIHDNKS 381 (430)
T ss_dssp HHHHHHHHHHCSSSEECS-CCSCSSC
T ss_pred HHHHHHHHHhCCcceecC-CCCCCCc
Confidence 455556666554344445 5677665
No 99
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=33.73 E-value=79 Score=28.45 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccch
Q 013780 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL 136 (436)
Q Consensus 78 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~ 136 (436)
+.+.|... ..+=.-..+.++|.+.|..++.+-|..........++..++++++++...
T Consensus 75 ~~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 75 KPKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp CCSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 33444333 44556677778888999887766666566667788999999999998654
No 100
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=33.08 E-value=1.5e+02 Score=26.22 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=45.2
Q ss_pred HhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 013780 72 RHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 72 ~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (436)
.+.| +++++.|... ..+-.-..+.++|.++|..++.+-|..........++..++++++++.
T Consensus 65 ~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 65 EADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp HHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred HHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 3445 4677776554 445566777778888899887776665556667888999999999985
No 101
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=32.67 E-value=1.2e+02 Score=27.30 Aligned_cols=79 Identities=9% Similarity=0.024 Sum_probs=48.1
Q ss_pred ccccHHHHH---HHHH---HHHHHHHh--cCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHh
Q 013780 53 ESLSFSQFK---SIVI---KVSHSFRH--LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 124 (436)
Q Consensus 53 ~~~Ty~el~---~~~~---~la~~L~~--~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~ 124 (436)
..+++.+.. -... ...+.|.+ .++++|++|+|..--.+-..++.+|-...|+.++.+.. +.+. ...++.
T Consensus 153 ~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~-~~~~~~ 229 (359)
T 1h2b_A 153 KDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEK-LKLAER 229 (359)
T ss_dssp TTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHH-HHHHHH
T ss_pred CCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHH-HHHHHH
Confidence 456777654 1111 12234555 68999999999998555555555555433887665543 3333 345567
Q ss_pred cCCcEEEEcc
Q 013780 125 SNPKLVITVP 134 (436)
Q Consensus 125 ~~~~~vi~~~ 134 (436)
.+++.++...
T Consensus 230 lGa~~vi~~~ 239 (359)
T 1h2b_A 230 LGADHVVDAR 239 (359)
T ss_dssp TTCSEEEETT
T ss_pred hCCCEEEecc
Confidence 8888887643
No 102
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=32.54 E-value=1.7e+02 Score=26.40 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=7.1
Q ss_pred CCCCCEEEEEcCCC
Q 013780 76 ITKKDVVLIFAPNS 89 (436)
Q Consensus 76 v~~gd~V~l~~~n~ 89 (436)
+++||.|++..+..
T Consensus 115 ~~~gd~Vl~~~~~~ 128 (420)
T 1t3i_A 115 LKAGDEIITTVMEH 128 (420)
T ss_dssp CCTTCEEEEETTCC
T ss_pred cCCCCEEEECcchh
Confidence 45566555544433
No 103
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=32.43 E-value=1.9e+02 Score=25.97 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=38.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhc---CCcEEEEcc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS---NPKLVITVP 134 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~---~~~~vi~~~ 134 (436)
+++||.|++..+... ....++...|+.++.++. .+.+.++..++.. ++++|+++.
T Consensus 124 ~~~gd~V~~~~p~~~---~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHA---SIIDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCH---HHHHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCH---HHHHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 478898877765433 334456678998888865 5678888888765 677777654
No 104
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=32.11 E-value=1.7e+02 Score=25.82 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=35.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecC--CC----CCHHHHHHHHHh----cCCcEEEEc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN--PV----YTVSELSKQVKD----SNPKLVITV 133 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~~~~~l~~----~~~~~vi~~ 133 (436)
+++||.|++..+..... ..++...|+.++.++ .+ .+.++++..++. -++++++.+
T Consensus 90 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSS---YVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHH---HHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHH---HHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 46888887765543333 333677888877776 32 357788888774 356666655
No 105
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=31.49 E-value=1.1e+02 Score=27.36 Aligned_cols=55 Identities=9% Similarity=0.220 Sum_probs=35.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC-------CCHHHHHHHHHhcCCcEEEEc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-------YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~~~~~l~~~~~~~vi~~ 133 (436)
+++||.|++..+.. .....++...|+.++.++.. .+.+.++..++..++++|+..
T Consensus 106 ~~~gd~vl~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVY---NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCC---HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCc---HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 46788777644432 23444566788888777653 567888888875667776644
No 106
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=31.45 E-value=1.4e+02 Score=26.56 Aligned_cols=75 Identities=11% Similarity=0.045 Sum_probs=46.1
Q ss_pred ccccHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcE
Q 013780 53 ESLSFSQFKSIVIK---VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (436)
Q Consensus 53 ~~~Ty~el~~~~~~---la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 129 (436)
..+++.+....... ..+.|.+.++++|++|+|...-.+-..++.+| ...|+.++.+..+.. .+ ..++..+++.
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~--~~-~~~~~lGa~~ 223 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARNEH--KK-QDALSMGVKH 223 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSSST--TH-HHHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHH--HH-HHHHhcCCCe
Confidence 45677765422111 12345566899999999988644455554444 467988776654332 22 3456788888
Q ss_pred EE
Q 013780 130 VI 131 (436)
Q Consensus 130 vi 131 (436)
++
T Consensus 224 v~ 225 (348)
T 3two_A 224 FY 225 (348)
T ss_dssp EE
T ss_pred ec
Confidence 88
No 107
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=31.35 E-value=1e+02 Score=27.34 Aligned_cols=10 Identities=0% Similarity=0.042 Sum_probs=5.0
Q ss_pred HHHHHHHHhh
Q 013780 323 KELMEDCQKN 332 (436)
Q Consensus 323 ~~~~~~~~~~ 332 (436)
.++.+.+.+.
T Consensus 302 ~~~~~~l~~~ 311 (382)
T 4hvk_A 302 ESIVLSLDMA 311 (382)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 4455555543
No 108
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=31.28 E-value=1.8e+02 Score=22.35 Aligned_cols=75 Identities=7% Similarity=-0.002 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHH---hcCCcEEEEccchHHH
Q 013780 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK---DSNPKLVITVPELWDK 139 (436)
Q Consensus 63 ~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~---~~~~~~vi~~~~~~~~ 139 (436)
+...+...|.+. ++..+.|+++.....-.+.-.+...|..+..++..++..+-...++ .-+.+++++.+.....
T Consensus 22 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 98 (163)
T 2hjv_A 22 KFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARG 98 (163)
T ss_dssp HHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTT
T ss_pred HHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 334455555443 3456777777654444444455567888889998888766555544 4567788877554433
Q ss_pred H
Q 013780 140 V 140 (436)
Q Consensus 140 ~ 140 (436)
+
T Consensus 99 l 99 (163)
T 2hjv_A 99 I 99 (163)
T ss_dssp C
T ss_pred C
Confidence 3
No 109
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=30.58 E-value=1.5e+02 Score=26.23 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=37.8
Q ss_pred CCCCCCEEEEEcCCCC-cHHHHHHHHH---HhCCeEeecCCCC------------CHHHHHHHHHhcCCcEEEEcc
Q 013780 75 GITKKDVVLIFAPNSI-HFPICFLGVI---AIGAIASTANPVY------------TVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 75 gv~~gd~V~l~~~n~~-~~~~~~lA~~---~~G~~~v~l~~~~------------~~~~~~~~l~~~~~~~vi~~~ 134 (436)
-+++||+|+|+.|.+. ..-....|+. ..|..++.-+.-. ..+++...+.+-++++|+|..
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 88 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLR 88 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESC
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 4788999999999763 2211222222 2477766432211 146778888888999999984
No 110
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=30.39 E-value=36 Score=29.43 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCC
Q 013780 65 IKVSHSFRHLGITKKDVVLIFAPN 88 (436)
Q Consensus 65 ~~la~~L~~~gv~~gd~V~l~~~n 88 (436)
..|.+.|+++||++||.|.|...=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 467788999999999999998764
No 111
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=29.97 E-value=1.5e+02 Score=26.24 Aligned_cols=60 Identities=8% Similarity=-0.145 Sum_probs=40.1
Q ss_pred HhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 013780 72 RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 72 ~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~ 133 (436)
...++++|++|+|..-.+.--..+...+...|+.++.+.. +.+.+..+.+..+++.++..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 4468999999999998654444444445578997766543 44555555477888877653
No 112
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=29.75 E-value=1.3e+02 Score=26.80 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=10.3
Q ss_pred CHHHHHHHHHhcCCcEEEEc
Q 013780 114 TVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 114 ~~~~~~~~l~~~~~~~vi~~ 133 (436)
+.+.++..++..++++|+.+
T Consensus 136 d~~~l~~~i~~~~~~~v~~~ 155 (393)
T 3kgw_A 136 TLQEVEEGLAQHKPVLLFLV 155 (393)
T ss_dssp CHHHHHHHHHHHCCSEEEEE
T ss_pred CHHHHHHHHhhCCCcEEEEe
Confidence 44555555554445555444
No 113
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=29.72 E-value=1.6e+02 Score=26.55 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=38.5
Q ss_pred HHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 013780 70 SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA-IASTANPVYTVSELSKQVKDSNPKLVIT 132 (436)
Q Consensus 70 ~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 132 (436)
.|...++++|++|+|...-.+-.+++.+ +...|+ .++.++. +. +-..+++..+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~--~~-~~~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQL-ARLAGATTVILSTR--QA-TKRRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECS--CH-HHHHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECC--CH-HHHHHHHHcCCCEEEC
Confidence 3556789999999999873344444444 446798 6666644 23 3344667788887774
No 114
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=29.59 E-value=1.6e+02 Score=26.63 Aligned_cols=57 Identities=21% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHhcCCcEEEEc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~~~~~~vi~~ 133 (436)
+++||.|.+..+.... ....-++...|+.++.++.+ .+.++++..++.-++++|+.+
T Consensus 83 ~~~gd~Vl~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 143 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFG-YLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMV 143 (416)
T ss_dssp CCTTCEEEEEESSHHH-HHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEecCCccc-HHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEE
Confidence 3455555554432111 01222334445544433322 244555555553344554443
No 115
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=29.58 E-value=1.7e+02 Score=26.12 Aligned_cols=35 Identities=9% Similarity=-0.048 Sum_probs=14.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHH-HHHhCCeEeecC
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLG-VIAIGAIASTAN 110 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA-~~~~G~~~v~l~ 110 (436)
+++||.|.+..+........+.. +...|+.++.++
T Consensus 98 ~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 133 (390)
T 1elu_A 98 WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFP 133 (390)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEEC
T ss_pred CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEc
Confidence 34556555544433322222222 233455554443
No 116
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=29.15 E-value=1e+02 Score=27.81 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=31.7
Q ss_pred HhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC-----CCHHHHHHHHHhcCCcEEEEc
Q 013780 72 RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 72 ~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~~~~~l~~~~~~~vi~~ 133 (436)
...++++||.|.+..+.... ...++...|+.++.++.+ .+.+.++..++. ++++|+..
T Consensus 72 ~~~~~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 72 MALGIGEGDEVITPSMTWVS---TLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HHTTCCTTCEEEEESSSCHH---HHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HHcCCCCCCEEEeCCCccHh---HHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 33446788877665443322 234555677766655432 345666665543 45666544
No 117
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=28.65 E-value=2.1e+02 Score=25.03 Aligned_cols=91 Identities=13% Similarity=-0.031 Sum_probs=54.1
Q ss_pred CceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHH
Q 013780 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (436)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~ 120 (436)
.++.+-..+.+..-||++--- ..+...+.+.|. ++|+.|... ..+=.-..+.++|.++|..++.+-|.........
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a--~~~i~~a~~~g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 102 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIG--ANMVWQAEKDGTLTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERKR 102 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHH--HHHHHHHHHTTSSCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 344443333344455555322 122222334454 566655443 4455666677778899988776655555556677
Q ss_pred HHHhcCCcEEEEccc
Q 013780 121 QVKDSNPKLVITVPE 135 (436)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (436)
.++..++++++++..
T Consensus 103 ~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 103 LLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 889999999998864
No 118
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=28.59 E-value=1.3e+02 Score=26.76 Aligned_cols=77 Identities=10% Similarity=0.011 Sum_probs=46.8
Q ss_pred ccccHHHHHHHHH---HHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHhcCCc
Q 013780 53 ESLSFSQFKSIVI---KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA-IASTANPVYTVSELSKQVKDSNPK 128 (436)
Q Consensus 53 ~~~Ty~el~~~~~---~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~ 128 (436)
..+++.+...... -..+.|...++++|++|+|+..-.+-..++.+ +...|+ .++.++. + ++-..+++..+++
T Consensus 138 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~ql-a~~~Ga~~Vi~~~~--~-~~~~~~~~~lGa~ 213 (352)
T 3fpc_A 138 KEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAG-ANHLGAGRIFAVGS--R-KHCCDIALEYGAT 213 (352)
T ss_dssp TTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHH-HHTTTCSSEEEECC--C-HHHHHHHHHHTCC
T ss_pred CCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEECC--C-HHHHHHHHHhCCc
Confidence 4566666543211 11233566789999999999854344444444 456788 5665654 2 3334567788888
Q ss_pred EEEEc
Q 013780 129 LVITV 133 (436)
Q Consensus 129 ~vi~~ 133 (436)
.++..
T Consensus 214 ~vi~~ 218 (352)
T 3fpc_A 214 DIINY 218 (352)
T ss_dssp EEECG
T ss_pred eEEcC
Confidence 88754
No 119
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=28.34 E-value=41 Score=29.35 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=23.4
Q ss_pred CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Q 013780 52 DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88 (436)
Q Consensus 52 ~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n 88 (436)
+..+|-.+ |.+.|+++||++||.|.|...=
T Consensus 19 ~~~~T~~~-------L~~~L~~LGI~~Gd~llVHsSL 48 (286)
T 3sma_A 19 RELVTRDR-------LASDLAALGVRPGGVLLVHASL 48 (286)
T ss_dssp CCEECHHH-------HHHHHHHHTCCTTCEEEEEECS
T ss_pred CCCcCHHH-------HHHHHHHcCCCCCCEEEEEech
Confidence 45666655 5567888999999999998774
No 120
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=28.17 E-value=41 Score=29.19 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCC
Q 013780 66 KVSHSFRHLGITKKDVVLIFAPN 88 (436)
Q Consensus 66 ~la~~L~~~gv~~gd~V~l~~~n 88 (436)
.|.+.|+++||++||.|.|...=
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHHcCCCCCCEEEEEech
Confidence 46778899999999999998763
No 121
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=27.93 E-value=1.5e+02 Score=26.61 Aligned_cols=57 Identities=14% Similarity=-0.011 Sum_probs=29.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHh-cCCcEEEEc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKD-SNPKLVITV 133 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~-~~~~~vi~~ 133 (436)
+++||.|.+..+..... ...-.+...|+.++.++.+ .+.++++..++. -++++|+.+
T Consensus 80 ~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 141 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGK-GFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVC 141 (392)
T ss_dssp CCTTCCEEEEESSHHHH-HHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCCEEEEecCCcccH-HHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEe
Confidence 45777776655432222 1112223456655544332 456777777754 356666654
No 122
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=27.86 E-value=1.4e+02 Score=26.54 Aligned_cols=77 Identities=4% Similarity=-0.052 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHH---HHHHHHhc--CCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcE
Q 013780 55 LSFSQFKSIVIK---VSHSFRHL--GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (436)
Q Consensus 55 ~Ty~el~~~~~~---la~~L~~~--gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 129 (436)
+++.+....... ..+.|.+. ++++|++|+|...-.+-..++.+|-..-|+.++.++. +. +-..+++..+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~-~~~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DD-DRLALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CH-HHHHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CH-HHHHHHHHcCCCE
Confidence 777765433221 22334443 7899999999987545666666665543666666643 33 3345667888988
Q ss_pred EEEcc
Q 013780 130 VITVP 134 (436)
Q Consensus 130 vi~~~ 134 (436)
++...
T Consensus 220 ~i~~~ 224 (345)
T 3jv7_A 220 AVKSG 224 (345)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 87654
No 123
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=27.81 E-value=2e+02 Score=25.48 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCC-C----CCHHHHHHHHHhcCCcEEEEc
Q 013780 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-V----YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~-~----~~~~~~~~~l~~~~~~~vi~~ 133 (436)
++||.|.+..+....... .-++...|+.++.++. + .+.+.++..++..++++|+.+
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 144 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVT 144 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEE
Confidence 678877665333222221 2344566877766654 2 356777777765456666654
No 124
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=27.55 E-value=2.1e+02 Score=22.64 Aligned_cols=76 Identities=8% Similarity=0.006 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHH---HHHHHHhcCCcEEEEccchHHH
Q 013780 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE---LSKQVKDSNPKLVITVPELWDK 139 (436)
Q Consensus 63 ~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~---~~~~l~~~~~~~vi~~~~~~~~ 139 (436)
+...+...|.+.+ ++..+.|+++.....-.+.-.+...|..+..+....+.++ +...++.-+.+++++.+.....
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 109 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcC
Confidence 4445566666543 5667888887654444444445556888888888776543 4444556678888887655444
Q ss_pred H
Q 013780 140 V 140 (436)
Q Consensus 140 ~ 140 (436)
+
T Consensus 110 l 110 (185)
T 2jgn_A 110 L 110 (185)
T ss_dssp -
T ss_pred C
Confidence 4
No 125
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=27.48 E-value=63 Score=24.71 Aligned_cols=41 Identities=5% Similarity=-0.095 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 65 ~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
.++...|.+.|+.+++.|.++|..+.....+...+...|..
T Consensus 66 ~~l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~~ 106 (148)
T 2fsx_A 66 AELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGIT 106 (148)
T ss_dssp HHHHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCCc
Confidence 44555555567788888999999888887777778888863
No 126
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=27.31 E-value=1.4e+02 Score=26.72 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=47.1
Q ss_pred cccHHHHHHHH--HHHH-HHHHh-cCCCCC-CEEEEEcCCC-CcHHHHHHHHHHhCCeEeecC-CCCCHHHHHHHHHhcC
Q 013780 54 SLSFSQFKSIV--IKVS-HSFRH-LGITKK-DVVLIFAPNS-IHFPICFLGVIAIGAIASTAN-PVYTVSELSKQVKDSN 126 (436)
Q Consensus 54 ~~Ty~el~~~~--~~la-~~L~~-~gv~~g-d~V~l~~~n~-~~~~~~~lA~~~~G~~~v~l~-~~~~~~~~~~~l~~~~ 126 (436)
.+++.+..... -..| +.|.+ .++++| ++|+|..-.+ +-.+++.+|- ..|+..+.+. .....++....++..+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 47777644321 1222 33444 379999 9999988744 5555555554 5798765553 2222233344557888
Q ss_pred CcEEEEc
Q 013780 127 PKLVITV 133 (436)
Q Consensus 127 ~~~vi~~ 133 (436)
++.++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 9888754
No 127
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=27.28 E-value=1.9e+02 Score=25.89 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=7.0
Q ss_pred CCCCCEEEEEcCC
Q 013780 76 ITKKDVVLIFAPN 88 (436)
Q Consensus 76 v~~gd~V~l~~~n 88 (436)
+++||.|++..+.
T Consensus 110 ~~~gd~vl~~~~~ 122 (406)
T 1kmj_A 110 VRAGDNIIISQME 122 (406)
T ss_dssp CCTTCEEEEETTC
T ss_pred CCCCCEEEEeccc
Confidence 3556666555444
No 128
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=27.25 E-value=1.3e+02 Score=27.30 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=38.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (436)
+++||.|.+-.+. +.....++...|+.+++++. .+.++++..++..++++|+++.
T Consensus 140 ~~~gd~Vl~~~~~---~~~~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 140 CQPNTNVYIDFFA---HMSLWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp CCTTCEEEEETTS---CHHHHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCEEEECCCc---CHHHHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECC
Confidence 4689988764443 34445566778998888754 5678888888876678888774
No 129
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=27.08 E-value=1.1e+02 Score=27.26 Aligned_cols=16 Identities=6% Similarity=0.073 Sum_probs=8.4
Q ss_pred HHHHHHHHhhCCCCeeee
Q 013780 323 KELMEDCQKNIPGATIFQ 340 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~i~~ 340 (436)
.++.+.+.+. ++.+..
T Consensus 302 ~~~~~~l~~~--gi~v~~ 317 (382)
T 4eb5_A 302 ESIVLSLDMA--GIQAST 317 (382)
T ss_dssp HHHHHHHHHH--TCBCBC
T ss_pred HHHHHHHHHC--CEEEec
Confidence 4566666554 355443
No 130
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=26.94 E-value=1.1e+02 Score=26.29 Aligned_cols=40 Identities=13% Similarity=0.381 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCc-HHHHHHHHHHhCC
Q 013780 65 IKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGA 104 (436)
Q Consensus 65 ~~la~~L~~~gv~~gd~V~l~~~n~~~-~~~~~lA~~~~G~ 104 (436)
..+...|.++|+.+++.|.+++..+.. ...+.+.+..+|.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~ 112 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGV 112 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCC
Confidence 566777778899999999999988765 5666666777776
No 131
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=26.63 E-value=1e+02 Score=28.57 Aligned_cols=51 Identities=24% Similarity=0.167 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHh--cCCCCCCEEEEEcCCCC-cH-HHHHHHHHHhCCeEeecC
Q 013780 60 FKSIVIKVSHSFRH--LGITKKDVVLIFAPNSI-HF-PICFLGVIAIGAIASTAN 110 (436)
Q Consensus 60 l~~~~~~la~~L~~--~gv~~gd~V~l~~~n~~-~~-~~~~lA~~~~G~~~v~l~ 110 (436)
|..+..++|..+.+ .++++|+.|.|..+... ++ -.+.-++..+|+.++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 45677888888875 56799999999998542 22 334456677788887654
No 132
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=26.59 E-value=1.9e+02 Score=25.61 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHhcCCcEEEEcc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~~~~~~vi~~~ 134 (436)
+++||.|.+..+. .......-.+...|+.++.++.+ .+.++++..++..++++|+.+.
T Consensus 74 ~~~gd~vi~~~~~-~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 135 (384)
T 3zrp_A 74 LKPNDKILVVSNG-VFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTH 135 (384)
T ss_dssp CCTTCEEEEECSS-HHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEES
T ss_pred cCCCCEEEEecCC-cchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 5788887776542 11111222234567776666543 3678888888776677777653
No 133
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.56 E-value=2.3e+02 Score=22.99 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=41.1
Q ss_pred CEEEEEcCCC----CcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 013780 80 DVVLIFAPNS----IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 80 d~V~l~~~n~----~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (436)
-+|.+....+ .-..++...+-..|..++.+..+.+.+++...++..+|++|....
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEEC
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 3566655442 333444445557799999999999999999999999999998764
No 134
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=26.55 E-value=3.2e+02 Score=23.88 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHh----C---CeEeecCCCCC------HHHHHHHHHhcCCcE
Q 013780 64 VIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAI----G---AIASTANPVYT------VSELSKQVKDSNPKL 129 (436)
Q Consensus 64 ~~~la~~L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~----G---~~~v~l~~~~~------~~~~~~~l~~~~~~~ 129 (436)
..++.+.+.+.+ +.++++|+|.+.-+.++.+++..+... | ..++.++..+. .+.+..+.+..+..+
T Consensus 8 ~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~ 87 (317)
T 1wy5_A 8 IRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKI 87 (317)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcE
Confidence 455666676544 578999999999999999988887764 4 44566766653 133456667778777
Q ss_pred EEEcc
Q 013780 130 VITVP 134 (436)
Q Consensus 130 vi~~~ 134 (436)
.+.+-
T Consensus 88 ~v~~~ 92 (317)
T 1wy5_A 88 FVGKE 92 (317)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66653
No 135
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=26.51 E-value=3e+02 Score=23.91 Aligned_cols=51 Identities=18% Similarity=-0.058 Sum_probs=36.3
Q ss_pred EcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 013780 85 FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (436)
Q Consensus 85 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 135 (436)
....+=.-..+.++|.++|..++.+-|..........++..++++++++..
T Consensus 70 ~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 70 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp EECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334444555666777889987776655544556667889999999998864
No 136
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=26.21 E-value=2e+02 Score=25.71 Aligned_cols=56 Identities=18% Similarity=0.133 Sum_probs=26.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCC----CCCHHHHHHHHHhcCCcEEEEc
Q 013780 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP----VYTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~----~~~~~~~~~~l~~~~~~~vi~~ 133 (436)
++||.|++..+....+ ...-++...|+.++.++. ..+.+++...++..++++|+.+
T Consensus 91 ~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 150 (396)
T 2ch1_A 91 EEGDRVLIAVNGIWAE-RAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLT 150 (396)
T ss_dssp CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCeEEEEcCCcccH-HHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 4566665554432222 111234455655544432 1345566665554345555543
No 137
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=25.88 E-value=2e+02 Score=26.43 Aligned_cols=56 Identities=7% Similarity=-0.078 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHH-HHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 013780 76 ITKKDVVLIFAPNSIHFPICF-LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~-lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~ 133 (436)
+++||.|++..+.-......+ ..+...|+.++.++.. +.+.++..++. +.++|+.+
T Consensus 117 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~le 173 (414)
T 3ndn_A 117 LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFFE 173 (414)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEEE
T ss_pred hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEEE
Confidence 456666655433222211111 1123456666666544 44555554433 45555543
No 138
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=25.83 E-value=1.1e+02 Score=27.49 Aligned_cols=79 Identities=11% Similarity=0.126 Sum_probs=45.8
Q ss_pred ccccHHHHHHHH---HHHHHHHHhcCCC-CCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCc
Q 013780 53 ESLSFSQFKSIV---IKVSHSFRHLGIT-KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128 (436)
Q Consensus 53 ~~~Ty~el~~~~---~~la~~L~~~gv~-~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 128 (436)
..+++.+..... ...-+.|.+.+++ +|++|+|...-.+-..++.+|- ..|+.++.+... .+.+....+..+++
T Consensus 151 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~~~--~~~~~~~~~~lGa~ 227 (357)
T 2cf5_A 151 EGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAK-AMGHHVTVISSS--NKKREEALQDLGAD 227 (357)
T ss_dssp SSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEESS--TTHHHHHHTTSCCS
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeCC--hHHHHHHHHHcCCc
Confidence 356776643211 1112345567888 9999999986445555555544 468876655543 23344444477787
Q ss_pred EEEEcc
Q 013780 129 LVITVP 134 (436)
Q Consensus 129 ~vi~~~ 134 (436)
.++...
T Consensus 228 ~vi~~~ 233 (357)
T 2cf5_A 228 DYVIGS 233 (357)
T ss_dssp CEEETT
T ss_pred eeeccc
Confidence 776543
No 139
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=25.80 E-value=1.9e+02 Score=27.00 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=47.8
Q ss_pred ccccHHHHHHHH--HHHH-HHHHh---cCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcC
Q 013780 53 ESLSFSQFKSIV--IKVS-HSFRH---LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126 (436)
Q Consensus 53 ~~~Ty~el~~~~--~~la-~~L~~---~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~ 126 (436)
..+++.+..... -..| +.|.. .++++|++|+|..-.+.--..+...+...|+.++.+.. +.+.+ ..++..+
T Consensus 197 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~--~~~~~-~~~~~lG 273 (456)
T 3krt_A 197 DHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS--SPQKA-EICRAMG 273 (456)
T ss_dssp TTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHHHT
T ss_pred CCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC--CHHHH-HHHHhhC
Confidence 457777754221 1222 22322 57899999999988554444444555567997776653 44444 4567788
Q ss_pred CcEEEEc
Q 013780 127 PKLVITV 133 (436)
Q Consensus 127 ~~~vi~~ 133 (436)
++.++..
T Consensus 274 a~~vi~~ 280 (456)
T 3krt_A 274 AEAIIDR 280 (456)
T ss_dssp CCEEEET
T ss_pred CcEEEec
Confidence 8887754
No 140
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=25.77 E-value=2.7e+02 Score=23.38 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=35.9
Q ss_pred HHHHHhcCCCCCCEEEEEcCCCCc-HHHHH-----HHHHHhCCe-EeecCCCCCHHH---HHHHHHhcCCcEEEEccc
Q 013780 68 SHSFRHLGITKKDVVLIFAPNSIH-FPICF-----LGVIAIGAI-ASTANPVYTVSE---LSKQVKDSNPKLVITVPE 135 (436)
Q Consensus 68 a~~L~~~gv~~gd~V~l~~~n~~~-~~~~~-----lA~~~~G~~-~v~l~~~~~~~~---~~~~l~~~~~~~vi~~~~ 135 (436)
|+.|+. ++...|+++.++..+ |+..+ -++...|.. +...+.....+. +...+...+++.+|....
T Consensus 2 Ar~L~~---~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (277)
T 3hs3_A 2 SLTLYQ---KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAF 76 (277)
T ss_dssp ---------CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred chhhhc---CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcch
Confidence 555554 345689999887432 22222 235567888 777766665543 233455568888887763
No 141
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=25.67 E-value=3.4e+02 Score=23.76 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=38.1
Q ss_pred cCCCCCCEEEEEcCCC-CcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 013780 74 LGITKKDVVLIFAPNS-IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 74 ~gv~~gd~V~l~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~ 133 (436)
.++++|++|+|..-.+ +-..++. .+...|+.++.+.. +.+.+. .++..+++.++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~-~a~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQ-LLKMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHH-HHHHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHH-HHHHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 4789999999998555 4444444 44568998776654 344444 6677888887764
No 142
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=25.41 E-value=1.9e+02 Score=25.57 Aligned_cols=55 Identities=9% Similarity=0.107 Sum_probs=37.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCC----CCCHHHHHHHHHhcCCcEEEEc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP----VYTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~----~~~~~~~~~~l~~~~~~~vi~~ 133 (436)
+++||.|++..+.-..+. .++...|+.++.++. ..+.++++..++..++++|+..
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 578999888766554433 235567877665543 2467888888887678888764
No 143
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=25.23 E-value=2.8e+02 Score=24.43 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=45.5
Q ss_pred ccccHHHHHHHH---HHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcE
Q 013780 53 ESLSFSQFKSIV---IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (436)
Q Consensus 53 ~~~Ty~el~~~~---~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 129 (436)
..+++.+..... ...-+.|.+.++++|++|+|....++-..++.+|. ..|+.++.+.. +.+.+. .++..+++.
T Consensus 136 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~ 211 (339)
T 1rjw_A 136 DNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDI--GDEKLE-LAKELGADL 211 (339)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHH-HTTCEEEEECS--CHHHHH-HHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEeC--CHHHHH-HHHHCCCCE
Confidence 346666633211 11223445568999999999998556666655554 57987766654 333433 445677776
Q ss_pred EEE
Q 013780 130 VIT 132 (436)
Q Consensus 130 vi~ 132 (436)
++.
T Consensus 212 ~~d 214 (339)
T 1rjw_A 212 VVN 214 (339)
T ss_dssp EEC
T ss_pred Eec
Confidence 653
No 144
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=24.89 E-value=2.4e+02 Score=26.53 Aligned_cols=69 Identities=7% Similarity=0.004 Sum_probs=50.2
Q ss_pred HHHHHHHhcC-CCCCCEEEEEcCCCCcHHHHHHHHHH----hC--CeEeecCCCCC-H------HHHHHHHHhcCCcEEE
Q 013780 66 KVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIA----IG--AIASTANPVYT-V------SELSKQVKDSNPKLVI 131 (436)
Q Consensus 66 ~la~~L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~~~~~l~~~~~~~vi 131 (436)
++.+.+.+.+ +.++++|+|.+.-+.++++++..+.. .| ..++-++..+. . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4566676655 57899999999999999988887776 34 56677777664 2 3456667788888777
Q ss_pred Ecc
Q 013780 132 TVP 134 (436)
Q Consensus 132 ~~~ 134 (436)
.+-
T Consensus 84 ~~~ 86 (464)
T 3a2k_A 84 AQI 86 (464)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 145
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=24.87 E-value=2.2e+02 Score=25.64 Aligned_cols=56 Identities=21% Similarity=0.155 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHhcCCcEEEEc
Q 013780 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~~~~~~vi~~ 133 (436)
++||.|.+..+... .....-++...|+.++.++.+ .+.+.++..++..++++|+.+
T Consensus 86 ~~gd~Vl~~~~~~~-~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 145 (411)
T 3nnk_A 86 RPGDKVLVPVFGRF-GHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTV 145 (411)
T ss_dssp CTTCEEEEEECSHH-HHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCEEEEecCCch-HHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEe
Confidence 45555554433211 111233334445544433322 134555555554455555544
No 146
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=24.81 E-value=2.1e+02 Score=25.69 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=7.7
Q ss_pred HHHHHHHHhhCCCCeeee
Q 013780 323 KELMEDCQKNIPGATIFQ 340 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~i~~ 340 (436)
.++.+.+.+. ++.+..
T Consensus 348 ~~~~~~L~~~--gi~v~~ 363 (406)
T 3cai_A 348 DRVVQRLADN--GILAIA 363 (406)
T ss_dssp HHHHHHHHHT--TEECEE
T ss_pred HHHHHHHHHC--CcEEec
Confidence 4455555543 354443
No 147
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=24.55 E-value=1.9e+02 Score=25.94 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC-----CCHHHHHHHHHhcCCcEEEEc
Q 013780 75 GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 75 gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~~~~~l~~~~~~~vi~~ 133 (436)
++++||.|.+..+. +.....++...|+.++.++.+ .+.+.++..++. ++++|+..
T Consensus 76 ~~~~g~~Vi~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVS---WSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSS---CHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCC---cHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 67889988776554 333344566788877665543 256677666643 45666653
No 148
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=24.37 E-value=2.4e+02 Score=24.97 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC-------CCHHHHHHHHHhcCCcEEEEc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-------YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~~~~~l~~~~~~~vi~~ 133 (436)
+++||.|++..+.. .....++...|+.++.++.. .+.++++..+ .-++++|+..
T Consensus 103 ~~~gd~vl~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~ 163 (383)
T 3kax_A 103 TKENESVLVQPPIY---PPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLC 163 (383)
T ss_dssp CCTTCEEEECSSCC---HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEE
T ss_pred CCCCCEEEEcCCCc---HHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEe
Confidence 46788877655433 23335566778887777653 4677777777 4466666543
No 149
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=24.27 E-value=1.2e+02 Score=25.84 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCC-cHHHHHHHHHHhCCe
Q 013780 65 IKVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAI 105 (436)
Q Consensus 65 ~~la~~L~~~gv~~gd~V~l~~~n~~-~~~~~~lA~~~~G~~ 105 (436)
..++..+.+.|+.+++.|.+++..+. ....+...+...|..
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~ 108 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQ 108 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCC
Confidence 46777777888889999999998775 555556666666763
No 150
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=23.90 E-value=1e+02 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 65 ~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
..+...+.+.++.+++.|.++|..+.....+.+.+..+|..
T Consensus 209 ~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~ 249 (271)
T 1e0c_A 209 TDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYP 249 (271)
T ss_dssp TTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCC
Confidence 34555666778999999999999999988888888899974
No 151
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=23.85 E-value=3.1e+02 Score=24.23 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHhcCCcEEEEc
Q 013780 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~~~~~~vi~~ 133 (436)
++||.|++..+....+ ..++...|+.++.++.+ .+.++++..++..++++|+.+
T Consensus 114 ~~gd~Vl~~~~~y~~~---~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 171 (369)
T 3cq5_A 114 GPGRTALGFQPSYSMH---PILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVT 171 (369)
T ss_dssp STTCEEEEEESSCTHH---HHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCEEEEcCCChHHH---HHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEe
Confidence 5788887776554333 23556678776655432 356777777765467777764
No 152
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=23.62 E-value=2.5e+02 Score=25.32 Aligned_cols=55 Identities=5% Similarity=0.045 Sum_probs=35.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCC-----CCCHHHHHHHHHhc---CCc-EEEEc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-----VYTVSELSKQVKDS---NPK-LVITV 133 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~~~~~l~~~---~~~-~vi~~ 133 (436)
+++||.|++..|.-..+ ..++...|+.++.++. ..+.+.++..++.. +.+ +++.+
T Consensus 122 ~~~gd~Vl~~~p~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 185 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPY---RKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLIN 185 (413)
T ss_dssp CCSSCEEEEESSCCTHH---HHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCCEEEECCCCcccH---HHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEe
Confidence 46899988877644333 3445667888777764 34677888877753 555 45543
No 153
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=23.26 E-value=1.7e+02 Score=26.26 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC-------CCHHHHHHHHHhcCCcEEEE
Q 013780 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-------YTVSELSKQVKDSNPKLVIT 132 (436)
Q Consensus 77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~~~~~l~~~~~~~vi~ 132 (436)
++||.|++..|.-.. ...++...|+.++.++.. .+.+.++..++..++++|+.
T Consensus 111 ~~gd~vl~~~p~~~~---~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 111 KPGDGVIIITPVYYP---FFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp CTTCEEEECSSCCTH---HHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred CCCCEEEEcCCCcHh---HHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 456766664433222 223344567666655442 45566666665345555554
No 154
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=23.10 E-value=1.9e+02 Score=25.91 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=46.8
Q ss_pred ccccHHHHHHHHHH--H-HHHH-HhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCc
Q 013780 53 ESLSFSQFKSIVIK--V-SHSF-RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128 (436)
Q Consensus 53 ~~~Ty~el~~~~~~--l-a~~L-~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 128 (436)
..+++.+....... . .+.| ...++++|++|+|...-.+-..++ ..+...|+.++.+.. +.+.+ ..++..+++
T Consensus 160 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~-qla~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~ 235 (363)
T 3uog_A 160 KSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGL-QIAKATGAEVIVTSS--SREKL-DRAFALGAD 235 (363)
T ss_dssp TTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHH-HHHHHTTCEEEEEES--CHHHH-HHHHHHTCS
T ss_pred CCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHH-HHHHHcCCEEEEEec--CchhH-HHHHHcCCC
Confidence 46777776533211 2 2334 356899999999999433444444 444567997776643 33333 446778888
Q ss_pred EEEE
Q 013780 129 LVIT 132 (436)
Q Consensus 129 ~vi~ 132 (436)
.++.
T Consensus 236 ~vi~ 239 (363)
T 3uog_A 236 HGIN 239 (363)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8876
No 155
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=22.90 E-value=2.7e+02 Score=21.58 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHH---hcCCcEEEEccch
Q 013780 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK---DSNPKLVITVPEL 136 (436)
Q Consensus 63 ~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~---~~~~~~vi~~~~~ 136 (436)
+...+...|.+. ++..+.|+++.....-.+.-.+...|..+..++..++..+-..+++ .-+.+++++.+..
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 94 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVC 94 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSC
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecch
Confidence 445555555543 4567888887655544444455566888888998888766555544 4456777776543
No 156
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=22.64 E-value=1.2e+02 Score=27.82 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=30.2
Q ss_pred HhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC-----CCHHHHHHHHHhcCCcEEEEc
Q 013780 72 RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 72 ~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~~~~~l~~~~~~~vi~~ 133 (436)
...++++||.|++..+..... ..++...|+.++.++.+ .+.+.++..++. ++++|+..
T Consensus 75 ~~~~~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 137 (418)
T 2c81_A 75 EALGIGEGDEVIVPSLTWIAT---ATAVLNVNALPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPV 137 (418)
T ss_dssp HHTTCCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCB
T ss_pred HHcCCCCcCEEEECCCccHhH---HHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEe
Confidence 334567788777665543333 33455677776655433 244555444432 34555543
No 157
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=22.62 E-value=1.6e+02 Score=22.31 Aligned_cols=49 Identities=18% Similarity=0.030 Sum_probs=25.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcE
Q 013780 80 DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (436)
Q Consensus 80 d~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 129 (436)
|.|.++.| .....-++..|..+|...+.+.+....+++...++..+..+
T Consensus 72 Dlvii~vp-~~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~ 120 (145)
T 2duw_A 72 DMVDVFRN-SEAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSV 120 (145)
T ss_dssp SEEECCSC-STHHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEE
T ss_pred CEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEE
Confidence 44555544 33334444455556655555555444555555555555443
No 158
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=22.61 E-value=2.3e+02 Score=25.37 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=39.8
Q ss_pred HHHHhcCCC-CCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 013780 69 HSFRHLGIT-KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (436)
Q Consensus 69 ~~L~~~gv~-~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (436)
+.|.+.+++ +|++|+|...-.+-..++.+| ...|+.++.+.. +.+.+....+..+++.++...
T Consensus 177 ~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 177 SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHHTTCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHHhcCcCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 345566888 999999998644555555544 457887665543 334444445577887776543
No 159
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=22.39 E-value=1.8e+02 Score=25.83 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCC-cHHHHHHHHHHhCCe
Q 013780 64 VIKVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAI 105 (436)
Q Consensus 64 ~~~la~~L~~~gv~~gd~V~l~~~n~~-~~~~~~lA~~~~G~~ 105 (436)
..++++.|.++||.+++.|.|+-.... ...-+++-+-..|..
T Consensus 98 ~~~f~~~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~ 140 (327)
T 3utn_X 98 KKVFDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHP 140 (327)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCC
Confidence 578999999999999999999977653 334455556666754
No 160
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=22.36 E-value=2e+02 Score=25.51 Aligned_cols=51 Identities=27% Similarity=0.320 Sum_probs=27.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 132 (436)
+++||.|++..+....+ ..++...|+.++.++ .+.++++..++. ++++|+.
T Consensus 110 ~~~gd~vl~~~p~~~~~---~~~~~~~g~~~~~v~--~d~~~l~~~l~~-~~~~v~~ 160 (370)
T 2z61_A 110 IDDGDEVLIQNPCYPCY---KNFIRFLGAKPVFCD--FTVESLEEALSD-KTKAIII 160 (370)
T ss_dssp CCTTCEEEEESSCCTHH---HHHHHHTTCEEEEEC--SSHHHHHHHCCS-SEEEEEE
T ss_pred cCCCCEEEEeCCCchhH---HHHHHHcCCEEEEeC--CCHHHHHHhccc-CceEEEE
Confidence 35677666655543332 233455677766665 455666555543 4444444
No 161
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=22.36 E-value=1.1e+02 Score=28.29 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHh--cCCCCCCEEEEEcCCC-CcH-HHHHHHHHHhCCeEeecC
Q 013780 60 FKSIVIKVSHSFRH--LGITKKDVVLIFAPNS-IHF-PICFLGVIAIGAIASTAN 110 (436)
Q Consensus 60 l~~~~~~la~~L~~--~gv~~gd~V~l~~~n~-~~~-~~~~lA~~~~G~~~v~l~ 110 (436)
|..+..++|..|.+ .++++|+.|.|..+-. .++ -.+.-++..+|+.++.+.
T Consensus 7 ~~~~l~k~A~~lV~~~~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 61 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVV 61 (418)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 56788889988876 5679999999988854 223 334456667788877654
No 162
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=22.30 E-value=2.7e+02 Score=24.83 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCC--C--CCHHHHHHHHHhcCCcEEEEc
Q 013780 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP--V--YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~--~--~~~~~~~~~l~~~~~~~vi~~ 133 (436)
++||.|.+..+..... ...-.+-..|+.++.++. + .+.++++..++..++++|+.+
T Consensus 92 ~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 151 (393)
T 2huf_A 92 EDGDVILIGHTGHWGD-RSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLT 151 (393)
T ss_dssp CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCEEEEECCCcchH-HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEE
Confidence 4566655544432211 111122334655444432 1 345566665554345555543
No 163
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=22.26 E-value=2.7e+02 Score=25.14 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=37.9
Q ss_pred HHHhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 013780 70 SFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGA-IASTANPVYTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 70 ~L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~~vi~~ 133 (436)
.|...+ +++|++|+|...-.+-..++.+ +...|+ .++.+.. +.+. ...++..+++.++..
T Consensus 186 al~~~~~~~~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~vi~~ 247 (380)
T 1vj0_A 186 AFDEYPESFAGKTVVIQGAGPLGLFGVVI-ARSLGAENVIVIAG--SPNR-LKLAEEIGADLTLNR 247 (380)
T ss_dssp HHHTCSSCCBTCEEEEECCSHHHHHHHHH-HHHTTBSEEEEEES--CHHH-HHHHHHTTCSEEEET
T ss_pred HHHhcCCCCCCCEEEEECcCHHHHHHHHH-HHHcCCceEEEEcC--CHHH-HHHHHHcCCcEEEec
Confidence 345567 9999999999943344444444 445784 6655543 3333 445667888888764
No 164
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=22.20 E-value=3.8e+02 Score=23.75 Aligned_cols=11 Identities=9% Similarity=-0.010 Sum_probs=6.5
Q ss_pred ceehhhhHHHh
Q 013780 209 GVILTHKNFIA 219 (436)
Q Consensus 209 ~v~~t~~~l~~ 219 (436)
|+++....+..
T Consensus 230 G~l~~~~~~~~ 240 (393)
T 1vjo_A 230 SPFTMSSRAIE 240 (393)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEECHHHHH
Confidence 66666665544
No 165
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=22.15 E-value=3.8e+02 Score=24.10 Aligned_cols=12 Identities=0% Similarity=-0.086 Sum_probs=5.8
Q ss_pred CchHHHHhhhcc
Q 013780 27 FSMVHFLFRNSA 38 (436)
Q Consensus 27 ~ti~~~l~~~~~ 38 (436)
..+.+.+.+.+.
T Consensus 36 ~~v~~a~~~~~~ 47 (423)
T 3lvm_A 36 PRVAEKMMQFMT 47 (423)
T ss_dssp HHHHHHHTTSSS
T ss_pred HHHHHHHHHHHh
Confidence 335555555444
No 166
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=21.94 E-value=2.5e+02 Score=25.10 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=45.0
Q ss_pred ccccHHHHHHHH---HHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcE
Q 013780 53 ESLSFSQFKSIV---IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (436)
Q Consensus 53 ~~~Ty~el~~~~---~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 129 (436)
..+++.+..... ....+.|.+.++++|++|+|...-.+-..++.+|- ..|+.++.+..+.. .+ ..++..+++.
T Consensus 151 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak-~~Ga~Vi~~~~~~~--~~-~~~~~lGa~~ 226 (360)
T 1piw_A 151 ENIPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVISRSSR--KR-EDAMKMGADH 226 (360)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEESSST--TH-HHHHHHTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEcCCHH--HH-HHHHHcCCCE
Confidence 356777643211 11234455578999999999998445555555544 57887665554322 22 2345577887
Q ss_pred EEEc
Q 013780 130 VITV 133 (436)
Q Consensus 130 vi~~ 133 (436)
++..
T Consensus 227 v~~~ 230 (360)
T 1piw_A 227 YIAT 230 (360)
T ss_dssp EEEG
T ss_pred EEcC
Confidence 7754
No 167
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=21.86 E-value=2.2e+02 Score=28.64 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=37.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCC--------------CHHHHHHHHHhc-CCc----EEEEcc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY--------------TVSELSKQVKDS-NPK----LVITVP 134 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~--------------~~~~~~~~l~~~-~~~----~vi~~~ 134 (436)
+++||.|.+--++... ..-++..+|+.++.+++.. +.+.++..++.. +.+ ++++.+
T Consensus 232 ~~pGD~VLv~r~~H~S---~~~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p 306 (715)
T 3n75_A 232 APAGSTILIDRNCHKS---LTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS 306 (715)
T ss_dssp CCTTCEEEEESSCCHH---HHHHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS
T ss_pred CCCCCEEEECCCccHH---HHHHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC
Confidence 5799988876554433 3347888999999888642 477888888753 333 555543
No 168
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=21.81 E-value=1.9e+02 Score=25.75 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC--------CCHHHHHHHHHhcCCcEEEE
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV--------YTVSELSKQVKDSNPKLVIT 132 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~--------~~~~~~~~~l~~~~~~~vi~ 132 (436)
+++||.|++..+.-.. ...++...|+.++.++.+ .+.++++..++. +++++.
T Consensus 111 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i 170 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSP---FNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFIL 170 (391)
T ss_dssp SCTTCEEEECSSCCTH---HHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEE
T ss_pred CCCCCEEEEcCCCCHH---HHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEE
Confidence 3577776664443322 233455677777766544 356677666665 555544
No 169
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=21.73 E-value=1.8e+02 Score=26.01 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=31.5
Q ss_pred HHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC-----CCHHHHHHHHHhcCCcEEE
Q 013780 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVI 131 (436)
Q Consensus 71 L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~~~~~l~~~~~~~vi 131 (436)
++..++++||.|++..+..... ..++...|+.++.++.+ .+.++++..++. +.++|+
T Consensus 70 l~~l~~~~gd~Vi~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~ 131 (388)
T 1b9h_A 70 LQVMGVGPGTEVIVPAFTFISS---SQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM 131 (388)
T ss_dssp HHHTTCCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC
T ss_pred HHHcCCCCcCEEEECCCccHHH---HHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEE
Confidence 3334567888877765544333 34556678776655432 345666655532 344554
No 170
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.73 E-value=2.4e+02 Score=20.67 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeec--CCCCCHHHH
Q 013780 68 SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA--NPVYTVSEL 118 (436)
Q Consensus 68 a~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~~ 118 (436)
+.+|.+.|+.++..+.|...+..+.+-++-=+++.|...+.+ .+..+..+.
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~ 99 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAAR 99 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHH
Confidence 566777899888777777777778888888888888654433 244554443
No 171
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=21.70 E-value=1.8e+02 Score=25.36 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=46.4
Q ss_pred ccccHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcE
Q 013780 53 ESLSFSQFKSIVIK---VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (436)
Q Consensus 53 ~~~Ty~el~~~~~~---la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 129 (436)
..+++.+....... ..+.|...++++|++|+|...-.+-.+++.+ +...|+.++.+. +. +. ...++..+++.
T Consensus 114 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~ql-ak~~Ga~Vi~~~-~~--~~-~~~~~~lGa~~ 188 (315)
T 3goh_A 114 DNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQM-LNNAGYVVDLVS-AS--LS-QALAAKRGVRH 188 (315)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHH-HHHHTCEEEEEC-SS--CC-HHHHHHHTEEE
T ss_pred CCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHH-HHHcCCEEEEEE-Ch--hh-HHHHHHcCCCE
Confidence 46778776433222 2233455689999999999993345554444 456798777766 22 22 23456788888
Q ss_pred EE
Q 013780 130 VI 131 (436)
Q Consensus 130 vi 131 (436)
++
T Consensus 189 v~ 190 (315)
T 3goh_A 189 LY 190 (315)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 172
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=21.68 E-value=1.7e+02 Score=27.13 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=37.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHH---------HHHHhCCeEeecCCC----CCHHHHHHHHHh-cCCcEEEEcc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFL---------GVIAIGAIASTANPV----YTVSELSKQVKD-SNPKLVITVP 134 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~l---------A~~~~G~~~v~l~~~----~~~~~~~~~l~~-~~~~~vi~~~ 134 (436)
+++||.|.+...+.+.....++ .+...|+.++.++.+ .+.++++..++. -++++|+++.
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 4789988765413333333222 234568888877663 567888888774 4678888766
No 173
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=21.53 E-value=2.2e+02 Score=25.43 Aligned_cols=53 Identities=9% Similarity=0.103 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC-------CCHHHHHHHHHhcCCcEEEE
Q 013780 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-------YTVSELSKQVKDSNPKLVIT 132 (436)
Q Consensus 77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~~~~~l~~~~~~~vi~ 132 (436)
++||.|++..|.-.. ...++...|+.++.++.. ...+.++..++..++++|+.
T Consensus 109 ~~gd~vl~~~p~y~~---~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 109 ETGEGVVIHTPAYDA---FYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp CTTCEEEEEESCCHH---HHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCEEEEcCCCcHH---HHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 567777765553222 334445667766555431 45677777766545666654
No 174
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=21.37 E-value=3.2e+02 Score=23.98 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHhcCCcEEEEc
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITV 133 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~~~~~~vi~~ 133 (436)
+++||.|.+..+.- .....++...|+.++.++.+ .+.+++...++. ++++|+.+
T Consensus 105 ~~~gd~vl~~~~~~---~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 162 (363)
T 3ffh_A 105 LDTTTNTVMATPTF---VQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-KTTIVWIC 162 (363)
T ss_dssp CSTTCEEEEEESSC---HHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEE
T ss_pred ccCCCEEEEcCCCh---HHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-CCCEEEEe
Confidence 46788888776543 23444556677776655433 245666666543 45666643
No 175
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=21.34 E-value=1.9e+02 Score=27.04 Aligned_cols=57 Identities=5% Similarity=-0.147 Sum_probs=42.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH
Q 013780 82 VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD 138 (436)
Q Consensus 82 V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~ 138 (436)
..+....+=.-..+.++|.++|..++.+=|..........++..++++++++..+.+
T Consensus 162 ~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~ 218 (442)
T 3ss7_X 162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV 218 (442)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 455555566666777788889988776666555566677889999999999876533
No 176
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.33 E-value=2.8e+02 Score=21.67 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=17.1
Q ss_pred HHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 013780 69 HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (436)
Q Consensus 69 ~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~ 104 (436)
.+|.+.|+.+...+.|...+..+.+.++==+++.|.
T Consensus 90 ~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~ 125 (161)
T 1oft_A 90 EWLRRAGLNRERILLLQAKDNAAALALSCEALRLGR 125 (161)
T ss_dssp HHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCC
Confidence 334444554444444444444455555555555544
No 177
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=21.01 E-value=1.2e+02 Score=26.46 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 65 ~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
..+...|.+.++.+++.|.++|..+.....+.+++..+|..
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~ 280 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKP 280 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCC
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCC
Confidence 45666777778989999999999999998888988889974
No 178
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=20.91 E-value=1.7e+02 Score=25.70 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccch
Q 013780 79 KDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL 136 (436)
Q Consensus 79 gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~ 136 (436)
++.|.. ...+=.-..+.++|.+.|..++.+-|..........++..++++++++..+
T Consensus 54 ~~~vv~-~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~ 110 (318)
T 2rkb_A 54 CRHLVC-SSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVW 110 (318)
T ss_dssp CCEEEE-CCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSH
T ss_pred CCEEEE-ECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCH
Confidence 344443 344556666677788899887776565555666778899999999988644
No 179
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=20.91 E-value=2.9e+02 Score=21.33 Aligned_cols=73 Identities=11% Similarity=-0.003 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHH---hcCCcEEEEccchHH
Q 013780 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK---DSNPKLVITVPELWD 138 (436)
Q Consensus 63 ~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~---~~~~~~vi~~~~~~~ 138 (436)
+...+...|.+. ++..+.|+++.....-.+.-.+...|..+..++..++..+-...++ .-..+++++.+....
T Consensus 18 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 93 (172)
T 1t5i_A 18 KNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp HHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST
T ss_pred HHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhc
Confidence 344555555553 3456777777654444444445556888888988888765555444 456778887754433
No 180
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=20.82 E-value=1.6e+02 Score=21.93 Aligned_cols=52 Identities=2% Similarity=-0.019 Sum_probs=36.0
Q ss_pred cccHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 54 SLSFSQFKSIV----IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 54 ~~Ty~el~~~~----~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
.+.+.++.+.. ..+...+...++.+++.|.++|..+.....+...+...|..
T Consensus 62 nip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 62 NVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp ECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEECSSSHHHHHHHHHHHTTTCC
T ss_pred EcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEECCCCchHHHHHHHHHHcCCC
Confidence 44555553322 24555555567888899999999988888888888888874
No 181
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=20.81 E-value=4e+02 Score=23.95 Aligned_cols=54 Identities=15% Similarity=0.064 Sum_probs=35.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCC-----CCCHHHHHHHHHhc---CCc-EEEE
Q 013780 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-----VYTVSELSKQVKDS---NPK-LVIT 132 (436)
Q Consensus 76 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~~~~~l~~~---~~~-~vi~ 132 (436)
+++||.|++..|.-..+. .++...|+.++.++. ..+.+.++..++.. +.+ +++.
T Consensus 123 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~ 185 (418)
T 3rq1_A 123 TEPGDEVLTADWYWGAYR---VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIF 185 (418)
T ss_dssp SCTTCEEEEESSCCTHHH---HHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred cCCCCEEEECCCCchhHH---HHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEE
Confidence 468999888776544333 456678888777754 34577888877753 555 4444
No 182
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=20.73 E-value=1.4e+02 Score=27.02 Aligned_cols=55 Identities=11% Similarity=0.046 Sum_probs=40.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccch
Q 013780 82 VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL 136 (436)
Q Consensus 82 V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~ 136 (436)
..+....+=.-..+.++|.+.|..++.+-|..........++..++++++++..+
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~ 149 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELL 149 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSST
T ss_pred EEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 3344444556677777788899887777666666677788899999999998643
No 183
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=20.64 E-value=1.5e+02 Score=25.73 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (436)
Q Consensus 65 ~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 105 (436)
..+...|.+.++.++..|.++|..+.....+.+++..+|..
T Consensus 226 ~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~ 266 (296)
T 1rhs_A 226 EELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKP 266 (296)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 45566666678888999999999999999888888888974
No 184
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=20.58 E-value=4.3e+02 Score=24.03 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=40.5
Q ss_pred EEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchH
Q 013780 84 IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW 137 (436)
Q Consensus 84 l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~ 137 (436)
+....+=.-..+.++|..+|..++.+-|..........++..++++++++..+.
T Consensus 116 v~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~ 169 (398)
T 4d9i_A 116 ATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYD 169 (398)
T ss_dssp EEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHH
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 335555566677778888899887776666666677888999999999987543
No 185
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=20.52 E-value=1.4e+02 Score=21.78 Aligned_cols=59 Identities=10% Similarity=0.209 Sum_probs=38.2
Q ss_pred CchHHHHhhhcccCCCceEEEeCCCC----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 013780 27 FSMVHFLFRNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85 (436)
Q Consensus 27 ~ti~~~l~~~~~~~p~~~a~~~~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~ 85 (436)
....+.+....+.+|+....+.++.+ ..+.+.==.+|+..++.+|.+.|+...+++-+.
T Consensus 33 ~~~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~ 95 (123)
T 3oon_A 33 YKKIDLIAKLLEKFKKNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFK 95 (123)
T ss_dssp HHHHHHHHHHHHHSCSCCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEE
Confidence 34555666677888885555555433 233333356789999999999999745555553
No 186
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=20.47 E-value=2.1e+02 Score=26.06 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=8.5
Q ss_pred CCCc-ceehhhhHHHh
Q 013780 205 GVSK-GVILTHKNFIA 219 (436)
Q Consensus 205 G~pK-~v~~t~~~l~~ 219 (436)
|.+- |.++....++.
T Consensus 215 g~ri~G~~~~~~~~~~ 230 (404)
T 1e5e_A 215 TDVVAGLICGKADLLQ 230 (404)
T ss_dssp SCCCCEEEEECHHHHH
T ss_pred CCCeEEEEEECHHHHH
Confidence 4443 66676666554
No 187
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=20.46 E-value=2.7e+02 Score=24.73 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=45.4
Q ss_pred ccccHHHHHHHHHHHH---HHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHhcCCc
Q 013780 53 ESLSFSQFKSIVIKVS---HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA-IASTANPVYTVSELSKQVKDSNPK 128 (436)
Q Consensus 53 ~~~Ty~el~~~~~~la---~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~ 128 (436)
..+++.+..-- .-++ +.|...++++|++|+|...-.+-..++.+|- ..|+ .++.++. +.+ -..+++..+++
T Consensus 144 ~~l~~~~aa~~-~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~-~~~~a~~lGa~ 218 (356)
T 1pl8_A 144 DNVTFEEGALI-EPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDL--SAT-RLSKAKEIGAD 218 (356)
T ss_dssp TTSCHHHHHHH-HHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHH-HHHHHHHTTCS
T ss_pred CCCCHHHHHhh-chHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHH-HHHHHHHhCCC
Confidence 35677664322 1222 3345568999999999986445555555554 5788 5555543 233 33456678888
Q ss_pred EEEEc
Q 013780 129 LVITV 133 (436)
Q Consensus 129 ~vi~~ 133 (436)
.++..
T Consensus 219 ~vi~~ 223 (356)
T 1pl8_A 219 LVLQI 223 (356)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 77753
No 188
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=20.21 E-value=99 Score=26.64 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHH-HhCC
Q 013780 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI-AIGA 104 (436)
Q Consensus 65 ~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~-~~G~ 104 (436)
..+...+.+.|+.+++.|.++|........+.+.+. .+|.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~ 259 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGY 259 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCC
Confidence 456677777899999999999998888777777777 7786
No 189
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=20.16 E-value=3.2e+02 Score=24.14 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHh-cCCcEEEEc
Q 013780 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKD-SNPKLVITV 133 (436)
Q Consensus 77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~-~~~~~vi~~ 133 (436)
++||.|.+..+.... ....-++...|+.++.++.+ .+.++++..++. -++++|+.+
T Consensus 93 ~~gd~vl~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 153 (386)
T 2dr1_A 93 SKGGKVLVTIIGAFG-KRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTIT 153 (386)
T ss_dssp CTTCEEEEEESSHHH-HHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCeEEEEcCCchh-HHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEE
Confidence 456665554432111 11233344456555444331 345666666643 345555544
No 190
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=20.12 E-value=3.5e+02 Score=23.98 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=47.0
Q ss_pred ccccHHHHHHHHHHHH---HHH-HhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCc
Q 013780 53 ESLSFSQFKSIVIKVS---HSF-RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128 (436)
Q Consensus 53 ~~~Ty~el~~~~~~la---~~L-~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 128 (436)
..+++.+.......++ +.| ...++++|++|+|..-.+.--..+...+...|+.++.+.. +.+.+ ..++..+++
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~ 214 (353)
T 4dup_A 138 KGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG--STGKC-EACERLGAK 214 (353)
T ss_dssp TTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC--CHHHH-HHHHhcCCC
Confidence 3577777643333222 234 3468999999999965554444444444577998766643 33333 455667888
Q ss_pred EEEEc
Q 013780 129 LVITV 133 (436)
Q Consensus 129 ~vi~~ 133 (436)
.++..
T Consensus 215 ~~~~~ 219 (353)
T 4dup_A 215 RGINY 219 (353)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 77754
No 191
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=20.08 E-value=3.8e+02 Score=23.51 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=46.5
Q ss_pred ccccHHHHHH---HHHHHHHHH-HhcCCCCCCEEEEEcCCC-CcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCC
Q 013780 53 ESLSFSQFKS---IVIKVSHSF-RHLGITKKDVVLIFAPNS-IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 127 (436)
Q Consensus 53 ~~~Ty~el~~---~~~~la~~L-~~~gv~~gd~V~l~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~ 127 (436)
..+++.+... ........+ ...++++|++|+|..-.+ +-..++.+| ...|+.++.+..+.. .+ ..++..++
T Consensus 115 ~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~--~~-~~~~~lga 190 (340)
T 3gms_A 115 DSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNK--HT-EELLRLGA 190 (340)
T ss_dssp TTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSST--TH-HHHHHHTC
T ss_pred CCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHH--HH-HHHHhCCC
Confidence 4577777542 112222233 456899999999998874 555555554 467988776654322 22 33455778
Q ss_pred cEEEEc
Q 013780 128 KLVITV 133 (436)
Q Consensus 128 ~~vi~~ 133 (436)
+.++..
T Consensus 191 ~~~~~~ 196 (340)
T 3gms_A 191 AYVIDT 196 (340)
T ss_dssp SEEEET
T ss_pred cEEEeC
Confidence 877754
Done!