Citrus Sinensis ID: 013781

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKASKGKKAMRRAEKERLKEGEAADEELKKIKKEVKKKASSSKDGTTKATSSRRKANVSDEDHSSPPHGKEEVDDDVQWQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQSHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSAESESEE
cccccccccccccccccccccccEEEEEEcccccEEEEEEHHHHHHHHccccHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHHHHHHccccccccccccEEEEEcccEEEEEccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccc
ccEEEEcccccccccEEEccccEEEEEEcccccEEEEEEcHHHHHHHHcccccccHHEcccEccccEEcccccccEEEcccccHHHHHHHHHHHHHHHEEccccccccEEEEEEcccEEEEcccccccccccccHHccEEEEEEcccccccccccHHHHHHHHHHHHcccccccHHHccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccc
mallnigadnrgdafyrykmpkMITKIegrgngiktNIVNMVDIAKAlarpasyttkyfgcelgaqskfdektgtslvngshDTAKLAGLLENFIKKYVQcygcgnpetEIIITKTQMIQLKCAacgfvsdvdmrdKLNTFilknppeskkaskGKKAMRRAEKERLKEGEAADEELKKIKKEVKKkassskdgttkatssrrkanvsdedhsspphgkeevdddvqwQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSkavsspkgshaengnsqshENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEglkggsknsqIWKNAKPFIEWLQsaesesee
mallnigadnrgdafyrYKMPKMitkiegrgngikTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNtfilknppeskkaskgkkaMRRAEKerlkegeaadeelKKIKkevkkkassskdgttkatssrrkanvsdedhsspphgkeevdddvQWQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSkavsspkgshaengnsqsHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWlqsaesesee
MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKASKGKKAMRRAEKERLKEGEAADeelkkikkevkkkassskDGTTKATSSRRKANVSDEDHSSPPHGKEEVDDDVQWQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQSHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSAESESEE
*****IGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFIL****************************************************************************************************************************************************************GMQLQTILGSL*****EKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWL*********
*******ADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFIL*************************************************************************HGKEEVDDDVQWQTDTSL**********************************KAVSS***************NLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWY**************KNAKPFIEW***A******
MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPP*************************ADEELKKI***********************************************WQTDTSLEAARQRIQEQLSAATADMVMLST*******************************NLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWL*********
*ALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPE********************************************************************************QT**S**AARQR*QEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQSHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSAE*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKASKGKKAMRRAEKERLKEGEAADEELKKIKKEVKKKASSSKDGTTKATSSRRKANVSDEDHSSPPHGKEEVDDDVQWQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQSHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSAESESEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query436 2.2.26 [Sep-21-2011]
P48724443 Eukaryotic translation in N/A no 0.986 0.970 0.714 1e-170
P55876451 Eukaryotic translation in N/A no 0.988 0.955 0.660 1e-157
Q9C8F1439 Probable eukaryotic trans yes no 0.974 0.968 0.643 1e-149
Q9S825437 Probable eukaryotic trans no no 0.958 0.956 0.630 1e-146
Q9VXK6464 Eukaryotic translation in yes no 0.917 0.862 0.344 1e-56
P55010431 Eukaryotic translation in yes no 0.316 0.320 0.597 3e-45
Q5R4L0431 Eukaryotic translation in yes no 0.316 0.320 0.597 4e-45
Q07205429 Eukaryotic translation in yes no 0.314 0.319 0.601 4e-45
Q22918436 Eukaryotic translation in no no 0.309 0.309 0.588 3e-44
Q09689395 Probable eukaryotic trans yes no 0.834 0.921 0.322 1e-43
>sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1 Back     alignment and function desciption
 Score =  599 bits (1544), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 320/448 (71%), Positives = 366/448 (81%), Gaps = 18/448 (4%)

Query: 1   MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 60
           MAL NIGA N  DAFYRYKMP+M+TKIEGRGNGIKTN+VNMVDIAK LARPASYTTKYFG
Sbjct: 1   MALQNIGAGNSDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKRLARPASYTTKYFG 60

Query: 61  CELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQ 120
           CELGAQSKFDEKTGTS VNG+H+TAKLAGLLE FIKKYVQCYGCGNPETEI+ITK QMIQ
Sbjct: 61  CELGAQSKFDEKTGTSHVNGAHETAKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMIQ 120

Query: 121 LKCAACGFVSDVDMRDKLNTFILKNPPESKKASKGKKAMRRAEKERLKEGEAADEELKKI 180
           LKCAACGFVSDVDMRDKL TFI+KNPPE KK SK KKAMRRAEKERLKEGEAADEELKK+
Sbjct: 121 LKCAACGFVSDVDMRDKLTTFIVKNPPEVKKGSKDKKAMRRAEKERLKEGEAADEELKKV 180

Query: 181 KKEVKKKASSS-KDGTTKATSSRRKANVSDEDHSSPPHGK-----------EEVDDDVQW 228
           KKEVKKK SSS KDGT K+T S++K + SDED  SP H +           ++ DD VQW
Sbjct: 181 KKEVKKKGSSSAKDGTAKSTISKKKGSGSDEDRRSPTHKQIEEKEEAKDEDDDDDDGVQW 240

Query: 229 QTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQSHE 288
            TDTSL+A+RQRI+EQLSA TADMVML+TDE E K KA S      +   ++NGNS+++ 
Sbjct: 241 LTDTSLDASRQRIKEQLSAVTADMVMLTTDEPEKKKKAASN-----QNGGSQNGNSKNYG 295

Query: 289 NLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFL 348
            +V E+KANL+K     +L + L +L   AQEKM+AL EALF+G EKGF +E +KKKN+ 
Sbjct: 296 TVVAEVKANLKKGFGASELLSHLAALPVPAQEKMSALVEALFEGTEKGFGRETLKKKNYF 355

Query: 349 GAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLK 408
            AAVAE EG Q+LLL AIE FC K +S A KEVALVLK LYD+DVLEEE IV WYQ+GLK
Sbjct: 356 AAAVAE-EGSQILLLHAIEEFCCKPNSNALKEVALVLKTLYDADVLEEEAIVLWYQKGLK 414

Query: 409 GGSKNSQIWKNAKPFIEWLQSAESESEE 436
           G +KNS+IWKNA+PFI+WLQ+AESES+E
Sbjct: 415 GDNKNSKIWKNAQPFIDWLQNAESESDE 442
Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).
Phaseolus vulgaris (taxid: 3885)
>sp|P55876|IF5_MAIZE Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9C8F1|IF5Y_ARATH Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1 Back     alignment and function description
>sp|Q9S825|IF5Z_ARATH Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1 Back     alignment and function description
>sp|Q9VXK6|IF5_DROME Eukaryotic translation initiation factor 5 OS=Drosophila melanogaster GN=eIF5 PE=1 SV=1 Back     alignment and function description
>sp|P55010|IF5_HUMAN Eukaryotic translation initiation factor 5 OS=Homo sapiens GN=EIF5 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4L0|IF5_PONAB Eukaryotic translation initiation factor 5 OS=Pongo abelii GN=EIF5 PE=2 SV=1 Back     alignment and function description
>sp|Q07205|IF5_RAT Eukaryotic translation initiation factor 5 OS=Rattus norvegicus GN=Eif5 PE=1 SV=1 Back     alignment and function description
>sp|Q22918|IF5_CAEEL Eukaryotic translation initiation factor 5 OS=Caenorhabditis elegans GN=C37C3.2 PE=2 SV=2 Back     alignment and function description
>sp|Q09689|IF5_SCHPO Probable eukaryotic translation initiation factor 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F7.05c PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
224119320444 predicted protein [Populus trichocarpa] 0.997 0.979 0.774 0.0
224077216452 predicted protein [Populus trichocarpa] 1.0 0.964 0.767 0.0
225453080458 PREDICTED: eukaryotic translation initia 0.986 0.938 0.764 0.0
147809825459 hypothetical protein VITISV_030619 [Viti 0.986 0.936 0.763 0.0
357508251439 Eukaryotic translation initiation factor 0.977 0.970 0.733 1e-176
356570163444 PREDICTED: eukaryotic translation initia 0.988 0.970 0.716 1e-174
224069521455 predicted protein [Populus trichocarpa] 0.986 0.945 0.752 1e-171
224110794455 predicted protein [Populus trichocarpa] 0.986 0.945 0.752 1e-171
356499628441 PREDICTED: eukaryotic translation initia 0.986 0.975 0.739 1e-170
1352439443 RecName: Full=Eukaryotic translation ini 0.986 0.970 0.714 1e-168
>gi|224119320|ref|XP_002331282.1| predicted protein [Populus trichocarpa] gi|222873707|gb|EEF10838.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/444 (77%), Positives = 382/444 (86%), Gaps = 9/444 (2%)

Query: 1   MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 60
           MAL NIGA N  DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG
Sbjct: 1   MALQNIGAANSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 60

Query: 61  CELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQ 120
           CELGAQSKFDEKTGTS VNGSHDTAKLAGLLENFIKKYVQCYGCGNPETE+IITK+QMIQ
Sbjct: 61  CELGAQSKFDEKTGTSHVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEVIITKSQMIQ 120

Query: 121 LKCAACGFVSDVDMRDKLNTFILKNPPESKKASKGKKAMRRAEKERLKEGEAADEELKKI 180
           LKCAACGFVSDVDMRDKL TFI+KNPPE+KK SK KKAMRRAEKERLKEGEAADEE +K 
Sbjct: 121 LKCAACGFVSDVDMRDKLTTFIVKNPPETKKGSKDKKAMRRAEKERLKEGEAADEE-QKK 179

Query: 181 KKEVKKKASSSKDGTTKATSSRRKANVSDEDHSSPPHGK------EEVDDDVQWQTDTSL 234
            K  KKK SS+KDG  KA+S ++KAN SDE+  SP H +       + +DDVQWQTDTSL
Sbjct: 180 LKNGKKKGSSTKDGHAKASSIKKKANSSDEERGSPTHSQVDEKEEADDEDDVQWQTDTSL 239

Query: 235 EAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSH--AENGNSQSHENLVD 292
           EAARQRIQEQLSAATADMVML+ DE+E  +K  SK   SP+     A  GNS ++E LV+
Sbjct: 240 EAARQRIQEQLSAATADMVMLAADETEKNSKTASKENGSPREEEPKAGCGNSSAYETLVE 299

Query: 293 ELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAV 352
           E+KANL+K ++  ++Q++LGSL GSAQEKM  LFEALF+GVEKGF+KEV KKK +L AAV
Sbjct: 300 EVKANLKKGVSASKIQSVLGSLDGSAQEKMNGLFEALFEGVEKGFAKEVGKKKKYLAAAV 359

Query: 353 AEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSK 412
           A+DEG QLLLLRAI AFCGKSSS A KEVALV+K LYD+DVLEEEY+VQWYQEGL+G SK
Sbjct: 360 AQDEGSQLLLLRAIGAFCGKSSSSALKEVALVMKDLYDADVLEEEYMVQWYQEGLEGPSK 419

Query: 413 NSQIWKNAKPFIEWLQSAESESEE 436
           +SQIWKNAKPFIEWLQ+AESESEE
Sbjct: 420 DSQIWKNAKPFIEWLQNAESESEE 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077216|ref|XP_002305183.1| predicted protein [Populus trichocarpa] gi|222848147|gb|EEE85694.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453080|ref|XP_002270702.1| PREDICTED: eukaryotic translation initiation factor 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147809825|emb|CAN64883.1| hypothetical protein VITISV_030619 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357508251|ref|XP_003624414.1| Eukaryotic translation initiation factor [Medicago truncatula] gi|355499429|gb|AES80632.1| Eukaryotic translation initiation factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|356570163|ref|XP_003553260.1| PREDICTED: eukaryotic translation initiation factor 5-like [Glycine max] Back     alignment and taxonomy information
>gi|224069521|ref|XP_002302989.1| predicted protein [Populus trichocarpa] gi|222844715|gb|EEE82262.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110794|ref|XP_002333033.1| predicted protein [Populus trichocarpa] gi|222834469|gb|EEE72946.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356499628|ref|XP_003518639.1| PREDICTED: eukaryotic translation initiation factor 5-like [Glycine max] Back     alignment and taxonomy information
>gi|1352439|sp|P48724.1|IF5_PHAVU RecName: Full=Eukaryotic translation initiation factor 5; Short=eIF-5 gi|1008881|gb|AAA92861.1| eukaryotic initiation factor 5 [Phaseolus vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
TAIR|locus:2196376439 AT1G36730 [Arabidopsis thalian 0.974 0.968 0.630 1.2e-138
TAIR|locus:2029416437 AT1G77840 [Arabidopsis thalian 0.993 0.990 0.623 1.3e-137
UNIPROTKB|E2RJU3430 EIF5 "Uncharacterized protein" 0.350 0.355 0.564 6.9e-63
UNIPROTKB|F1N0F7429 EIF5 "Uncharacterized protein" 0.350 0.356 0.564 1.1e-62
MGI|MGI:95309429 Eif5 "eukaryotic translation i 0.350 0.356 0.558 1.1e-62
RGD|619861429 Eif5 "eukaryotic translation i 0.350 0.356 0.558 1.1e-62
UNIPROTKB|Q07205429 Eif5 "Eukaryotic translation i 0.350 0.356 0.558 1.1e-62
UNIPROTKB|P55010431 EIF5 "Eukaryotic translation i 0.350 0.354 0.558 6.1e-62
UNIPROTKB|Q5ZIE0430 EIF5 "Uncharacterized protein" 0.350 0.355 0.558 5.3e-61
FB|FBgn0030719464 eIF5 "eIF5" [Drosophila melano 0.651 0.612 0.385 1.8e-60
TAIR|locus:2196376 AT1G36730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1357 (482.7 bits), Expect = 1.2e-138, P = 1.2e-138
 Identities = 283/449 (63%), Positives = 336/449 (74%)

Query:     1 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 60
             MAL NIGA NR DAFYRYKMP+M+TKIEGRGNGIKTN+VNMV+IAKAL RPA+YTTKYFG
Sbjct:     1 MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFG 60

Query:    61 CELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQ 120
             CELGAQSKFDEK GTSLVNG+HDT+KLAGLLENFIKKYVQCYGCGNPETEI+ITKTQM+Q
Sbjct:    61 CELGAQSKFDEKNGTSLVNGAHDTSKLAGLLENFIKKYVQCYGCGNPETEILITKTQMLQ 120

Query:   121 LKCAACGFVSDVDMRDKLNTFILKNPPESKKASKGKKAMRRAEKERLKEGEAADXXXXXX 180
             LKCAACGF+SDVDMRDKL +FILKNPPE KK+SK KK+MRRAEKERL+EGEAAD      
Sbjct:   121 LKCAACGFLSDVDMRDKLTSFILKNPPEQKKSSKDKKSMRRAEKERLREGEAADEEMRKL 180

Query:   181 XXXXXXXXXXXXDGTTKATSSRRK-----ANVSDEDHSSPPHGKEEVDDDVQWQTDTSLE 235
                          GT+K   S++K      ++SDE+  +     EE DDDVQWQTDTS E
Sbjct:   181 KKEAASKKKAATTGTSKDKVSKKKDHSPPRSLSDENDQAD---SEEDDDDVQWQTDTSRE 237

Query:   236 AARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQ----SHENLV 291
             AA +R++EQLSA TA+MVMLST E +       KA   P+  H ENGNS+    +HE LV
Sbjct:   238 AAEKRMKEQLSAVTAEMVMLSTVEEKKPVAEVKKA---PEQVH-ENGNSKIPENAHEKLV 293

Query:   292 DELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAA 351
             +E+K  L    +  QL+T L S S + QEKM ALF ALF G  KGF+KEV+KKK +L A 
Sbjct:   294 NEIKELLSSGSSPTQLKTALASNSANPQEKMDALFSALFGGTGKGFAKEVIKKKKYLLAL 353

Query:   352 VA--EDEGL--QLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGL 407
             +   E+ G   Q+ LL  IE+FC K+S+ A KEVALV+K LYD D+L+E+ IV+WY +G+
Sbjct:   354 MMMQEEAGAPAQMGLLNGIESFCMKASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGV 413

Query:   408 KGGSKNSQIWKNAKPFIEWLQSAESESEE 436
             K    +S + KN  PFIEWLQ+AESESEE
Sbjct:   414 K----SSPVLKNVTPFIEWLQNAESESEE 438
GO:0003743 "translation initiation factor activity" evidence=IEA;ISS
GO:0006413 "translational initiation" evidence=IEA
GO:0006446 "regulation of translational initiation" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2029416 AT1G77840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJU3 EIF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N0F7 EIF5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:95309 Eif5 "eukaryotic translation initiation factor 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619861 Eif5 "eukaryotic translation initiation factor 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q07205 Eif5 "Eukaryotic translation initiation factor 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P55010 EIF5 "Eukaryotic translation initiation factor 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIE0 EIF5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0030719 eIF5 "eIF5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VXK6IF5_DROMENo assigned EC number0.34470.91740.8620yesno
Q9C8F1IF5Y_ARATHNo assigned EC number0.64360.97470.9681yesno
Q09689IF5_SCHPONo assigned EC number0.32260.83480.9215yesno
P55876IF5_MAIZENo assigned EC number0.66070.98850.9556N/Ano
P38431IF5_YEASTNo assigned EC number0.32260.86460.9308yesno
P48724IF5_PHAVUNo assigned EC number0.71420.98620.9706N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01650024
hypothetical protein (444 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IV3730
SubName- Full=Putative uncharacterized protein; (223 aa)
     •  0.821
grail3.0124004301
hypothetical protein (575 aa)
     •  0.820
estExt_Genewise1_v1.C_LG_VIII0704
SubName- Full=Putative uncharacterized protein; (293 aa)
    ••  0.820
grail3.0022021301
SubName- Full=Putative uncharacterized protein; (294 aa)
    ••  0.819
fgenesh4_pm.C_LG_XVI000211
hypothetical protein (895 aa)
     •  0.811
fgenesh4_pg.C_LG_II000156
hypothetical protein (910 aa)
     •  0.811
estExt_fgenesh4_pm.C_LG_V0660
hypothetical protein (897 aa)
     •  0.811
estExt_Genewise1_v1.C_LG_XIV3113
SubName- Full=Putative uncharacterized protein; (333 aa)
     •  0.811
grail3.0024032201
SubName- Full=Putative uncharacterized protein; (437 aa)
     •  0.811
grail3.0022015701
SubName- Full=Putative uncharacterized protein; (287 aa)
     •  0.811

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
smart00653110 smart00653, eIF2B_5, domain present in translation 7e-53
pfam01873125 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 3e-50
cd11561157 cd11561, W2_eIF5, C-terminal W2 domain of eukaryot 1e-35
smart0051583 smart00515, eIF5C, Domain at the C-termini of GCD6 5e-19
pfam0202075 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon 5e-17
cd11558169 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of 1e-15
PRK03988138 PRK03988, PRK03988, translation initiation factor 2e-15
TIGR00311133 TIGR00311, aIF-2beta, translation initiation facto 3e-11
PRK12336201 PRK12336, PRK12336, translation initiation factor 3e-11
COG1601151 COG1601, GCD7, Translation initiation factor 2, be 4e-10
cd11560194 cd11560, W2_eIF5C_like, C-terminal W2 domain of th 7e-09
cd11473135 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/ 1e-05
>gnl|CDD|214764 smart00653, eIF2B_5, domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information 
 Score =  172 bits (437), Expect = 7e-53
 Identities = 54/115 (46%), Positives = 66/115 (57%), Gaps = 5/115 (4%)

Query: 15  FYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTG 74
           FYR+KMP      EG+G   KT IVN  DIAKAL RP  +  K+   ELG Q   D K G
Sbjct: 1   FYRFKMPPPQVLREGKG---KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGK-G 56

Query: 75  TSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFV 129
             +VNG     KL  LL  +IK+YV C  CG+P+TE+I    ++  LKC ACG  
Sbjct: 57  RLIVNGRFTPKKLQDLLRRYIKEYVLCPECGSPDTELIKE-NRLFFLKCEACGAR 110

Length = 110
>gnl|CDD|216754 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 Back     alignment and domain information
>gnl|CDD|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation initiation factor 5 Back     alignment and domain information
>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5 Back     alignment and domain information
>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon Back     alignment and domain information
>gnl|CDD|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon Back     alignment and domain information
>gnl|CDD|235189 PRK03988, PRK03988, translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>gnl|CDD|129411 TIGR00311, aIF-2beta, translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>gnl|CDD|183451 PRK12336, PRK12336, translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|224517 COG1601, GCD7, Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins Back     alignment and domain information
>gnl|CDD|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 436
KOG2767400 consensus Translation initiation factor 5 (eIF-5) 100.0
smart00653110 eIF2B_5 domain present in translation initiation f 100.0
PF01873125 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: 100.0
TIGR00311133 aIF-2beta translation initiation factor aIF-2, bet 100.0
PRK03988138 translation initiation factor IF-2 subunit beta; V 100.0
PRK12336201 translation initiation factor IF-2 subunit beta; P 100.0
KOG2768231 consensus Translation initiation factor 2, beta su 99.97
COG1601151 GCD7 Translation initiation factor 2, beta subunit 99.95
KOG2297412 consensus Predicted translation factor, contains W 99.85
PF0202084 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003 99.84
smart0051583 eIF5C Domain at the C-termini of GCD6, eIF-2B epsi 99.82
KOG1461673 consensus Translation initiation factor 2B, epsilo 99.75
PF09090253 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This 96.55
COG1326201 Uncharacterized archaeal Zn-finger protein [Genera 94.5
TIGR0244359 conserved hypothetical metal-binding protein. Memb 93.99
PF0952671 DUF2387: Probable metal-binding protein (DUF2387); 93.69
PRK00464154 nrdR transcriptional regulator NrdR; Validated 91.2
PF0125383 SUI1: Translation initiation factor SUI1; InterPro 89.83
smart0044040 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo 89.72
PF0109639 TFIIS_C: Transcription factor S-II (TFIIS); InterP 88.71
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 88.14
PF1435461 Lar_restr_allev: Restriction alleviation protein L 86.72
PRK0971064 lar restriction alleviation and modification prote 86.26
TIGR00244147 transcriptional regulator NrdR. Members of this al 85.85
TIGR0365553 anti_R_Lar restriction alleviation protein, Lar fa 85.57
PF1267749 DUF3797: Domain of unknown function (DUF3797); Int 85.48
PHA02998195 RNA polymerase subunit; Provisional 83.35
PF1480334 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. 82.51
TIGR01159173 DRP1 density-regulated protein DRP1. This protein 82.27
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-108  Score=807.05  Aligned_cols=386  Identities=48%  Similarity=0.734  Sum_probs=314.5

Q ss_pred             ceeccCCCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEec
Q 013781            2 ALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGS   81 (436)
Q Consensus         2 a~ini~~~~~~D~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~   81 (436)
                      |+||| +|++.|||||||||++++|+||+||||||+|+||.|||+||+|||.|++|||||||||||+||.++|||||||+
T Consensus         1 a~iNI-nrsn~D~FYRYKMPrl~aKvEGKGNGIKTvIvNm~eIakAL~RPp~Y~tKyFGcELGAQT~fd~kn~ryiVNG~   79 (400)
T KOG2767|consen    1 ASINI-NRSNRDPFYRYKMPRLQAKVEGKGNGIKTVIVNMVEIAKALGRPPLYPTKYFGCELGAQTKFDVKNGRYIVNGA   79 (400)
T ss_pred             Ccccc-cccccchhhhhccchhhhhccccCCCeeeeeecHHHHHHHhCCCCCcccccceeeccccccccccCCeeeeccc
Confidence            57999 78888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhccccCCCCCCCceEEEecCceeeeeccccCcccccCchhhhhhhhhcCCCcccccchhhHHHHH
Q 013781           82 HDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKASKGKKAMRR  161 (436)
Q Consensus        82 ~~~~~l~~~l~~fi~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~kl~~~i~k~pp~~~~~~k~~k~~~~  161 (436)
                      |++.+||++|++||++|||||+|+||||.|++++++++.++|+|||.++.+++||||++|||||||++.+++|++|+++ 
T Consensus        80 Hd~~KLqdlLdgFIkKFVlC~~C~NPETel~itk~q~i~~~CkACG~r~~~d~rhKLs~fIlKNPP~~~~~s~~kk~~~-  158 (400)
T KOG2767|consen   80 HEASKLQDLLDGFIKKFVLCPSCENPETELIITKKQTISLKCKACGFRSDMDLRHKLSTFILKNPPEQKDSSKDKKKAE-  158 (400)
T ss_pred             ccHHHHHHHHHHHHHHheeCcCCCCCceeEEecccchhhhHHHHcCCcccccchhhhcceeecCCcccccchhhhHHHH-
Confidence            9999999999999999999999999999999987899999999999999999999999999999999888888877543 


Q ss_pred             HHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCccccccccccCCCCCCCC------CCCCCCCCCCccccccccccHH
Q 013781          162 AEKERLKEGEAADEELKKIKKEVKKKASSSKDGTTKATSSRRKANVSDEDHS------SPPHGKEEVDDDVQWQTDTSLE  235 (436)
Q Consensus       162 ~~~~~~~~~~~~d~~~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~dddv~W~~DtSee  235 (436)
                       +++|.+          |.+ . +++|+  ++.        ......+++.+      +|.+..+ ++||.+|++|||+|
T Consensus       159 -~k~R~~----------K~k-~-k~~g~--~s~--------~~~~~~~~~~~~~i~~~a~~~t~e-~~DDddW~~Dtsee  214 (400)
T KOG2767|consen  159 -KKERKG----------KSK-D-KKDGS--KSS--------KNETSPDDSLSREIDPAAPLETAE-EDDDDDWAVDTSEE  214 (400)
T ss_pred             -HHHhhh----------hcc-c-ccccc--cCC--------ccCCCcccccccccccccCccccc-ccccccccccchHH
Confidence             222211          000 0 01110  000        00011111111      1122222 23333499999999


Q ss_pred             HHHHHHHHHhHHHhhhhhhcccchhhhHhhhhccccCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCChhHHHHHHHhcC
Q 013781          236 AARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQSHENLVDELKANLQKSITGMQLQTILGSLS  315 (436)
Q Consensus       236 AvkaR~~e~ls~~~~~~~~~~~de~e~~~~~~~~~~~~~~e~~~~~~~~~~~~e~v~~l~~~~~~~~s~~ei~~~~~~l~  315 (436)
                      |+++||+ +|+++++.|||++|.+..++++.              .   .-++.+..|+.+... +.+..||..++.+++
T Consensus       215 a~r~R~~-~Ls~~~~~~~~~sd~e~~E~~~~--------------~---~~~d~~~~~~~en~~-~~~~kEi~~~a~~l~  275 (400)
T KOG2767|consen  215 AIRARMQ-ELSANAKEMLLLSDLEKSEEERE--------------D---ILYDFVKKKKEENVP-DKSDKEIVKEAERLD  275 (400)
T ss_pred             HHHHHHH-HHhhhhhhhhhhhhhhhhHHHHH--------------H---HHHHhhhhcccccCC-CccHHHHHHHHHHHh
Confidence            9999995 69999999998877432211111              0   123333333333322 136679999999999


Q ss_pred             CChHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHhcCChHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhccccc
Q 013781          316 GSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLE  395 (436)
Q Consensus       316 ls~~~~~~vl~eaLf~~v~~~i~k~I~k~~~lL~r~~~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYd~DIle  395 (436)
                      +. ++...+|.++||+.   .|+++|.++++||.+|+.+++++|++||++||+||..++..+++.+|.||+.|||+|||+
T Consensus       276 i~-~k~p~vl~~~Lf~e---~ivkei~k~~~~l~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd~DI~~  351 (400)
T KOG2767|consen  276 IK-NKAPLVLAEVLFDE---KIVKEILKHRALLLKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKELYDEDILE  351 (400)
T ss_pred             hc-ccchHHHHHHHhhh---HHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh
Confidence            84 48899999999998   999999999999999999669999999999999999988999999999999999999999


Q ss_pred             hHHHHHHhhccCCCCc---chhHHHHhhhHHHHHhcccccccCC
Q 013781          396 EEYIVQWYQEGLKGGS---KNSQIWKNAKPFIEWLQSAESESEE  436 (436)
Q Consensus       396 EE~Il~W~~k~s~~~~---~~~~vrk~a~pFI~WLeEAEEEsee  436 (436)
                      |++|+.||++++++||   ..+++++.++|||+||++||+|++|
T Consensus       352 e~vi~~w~~K~skk~vsk~~sk~i~e~a~Pfi~WL~~AESe~ee  395 (400)
T KOG2767|consen  352 EEVIIKWGEKPSKKYVSKEKSKKIRENAKPFIEWLKNAESEDEE  395 (400)
T ss_pred             HHHHHHHHhcccccccchhhhhhhHhhhhHHHHHHHhccccccc
Confidence            9999999999999998   3479999999999999999876653

>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology [] Back     alignment and domain information
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>PRK03988 translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included [] Back     alignment and domain information
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5 Back     alignment and domain information
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain Back     alignment and domain information
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only] Back     alignment and domain information
>TIGR02443 conserved hypothetical metal-binding protein Back     alignment and domain information
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC Back     alignment and domain information
>PRK00464 nrdR transcriptional regulator NrdR; Validated Back     alignment and domain information
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation [] Back     alignment and domain information
>smart00440 ZnF_C2C2 C2C2 Zinc finger Back     alignment and domain information
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar Back     alignment and domain information
>PRK09710 lar restriction alleviation and modification protein; Reviewed Back     alignment and domain information
>TIGR00244 transcriptional regulator NrdR Back     alignment and domain information
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family Back     alignment and domain information
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PHA02998 RNA polymerase subunit; Provisional Back     alignment and domain information
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C Back     alignment and domain information
>TIGR01159 DRP1 density-regulated protein DRP1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
2g2k_A170 Nmr Structure Of An N-Terminal Fragment Of The Euka 6e-45
2e9h_A157 Solution Structure Of The Eif-5_eif-2b Domain From 7e-45
2d74_B148 Crystal Structure Of Translation Initiation Factor 3e-08
1nee_A138 Structure Of Archaeal Translation Factor Aif2beta F 1e-07
2iu1_A208 Crystal Structure Of Eif5 C-Terminal Domain Length 4e-05
2qmu_C138 Structure Of An Archaeal Heterotrimeric Initiation 5e-04
3cw2_K139 Crystal Structure Of The Intact Archaeal Translatio 5e-04
2nxu_A146 Atomic Structure Of Translation Initiation Factor A 6e-04
>pdb|2G2K|A Chain A, Nmr Structure Of An N-Terminal Fragment Of The Eukaryotic Initiation Factor 5 (Eif5) Length = 170 Back     alignment and structure 
Iteration: 1

 Score =  178 bits (451), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 83/138 (60%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Query: 13  DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 72
           D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K
Sbjct: 11  DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70
Query: 73  TGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSD 131
               +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   C ACG+   
Sbjct: 71  NDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130
Query: 132 VDMRDKLNTFILKNPPES 149
           +D   KL TFILKNPPE+
Sbjct: 131 LDTHHKLCTFILKNPPEN 148
>pdb|2E9H|A Chain A, Solution Structure Of The Eif-5_eif-2b Domain From Human Eukaryotic Translation Initiation Factor 5 Length = 157 Back     alignment and structure
>pdb|2D74|B Chain B, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 148 Back     alignment and structure
>pdb|1NEE|A Chain A, Structure Of Archaeal Translation Factor Aif2beta From Methanobacterium Thermoautrophicum Length = 138 Back     alignment and structure
>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain Length = 208 Back     alignment and structure
>pdb|2QMU|C Chain C, Structure Of An Archaeal Heterotrimeric Initiation Factor 2 Reveals A Nucleotide State Between The Gtp And The Gdp States Length = 138 Back     alignment and structure
>pdb|3CW2|K Chain K, Crystal Structure Of The Intact Archaeal Translation Initiation Factor 2 From Sulfolobus Solfataricus . Length = 139 Back     alignment and structure
>pdb|2NXU|A Chain A, Atomic Structure Of Translation Initiation Factor Aif2 Beta-Subunit From Archaebacteria Sulfolobus Solfataricus: High Resolution Nmr In Solution Length = 146 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 7e-61
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 7e-61
2d74_B148 Translation initiation factor 2 beta subunit; prot 8e-41
1nee_A138 EIF-2-beta, probable translation initiation factor 8e-40
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 2e-39
2iu1_A208 EIF5, eukaryotic translation initiation factor 5; 2e-24
2ful_A177 EIF-5, eukaryotic translation initiation factor 5; 6e-23
1paq_A189 Translation initiation factor EIF-2B epsilon subun 9e-22
3jui_A182 Translation initiation factor EIF-2B subunit EPSI; 1e-19
3d3m_A168 Eukaryotic translation initiation factor 4 gamma 2 8e-12
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 2e-09
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 3e-04
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 157 Back     alignment and structure
 Score =  194 bits (493), Expect = 7e-61
 Identities = 84/148 (56%), Positives = 105/148 (70%), Gaps = 2/148 (1%)

Query: 4   LNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCEL 63
           +N+      D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCEL
Sbjct: 10  VNVNRSV-SDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCEL 68

Query: 64  GAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIII-TKTQMIQLK 122
           GAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   
Sbjct: 69  GAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNS 128

Query: 123 CAACGFVSDVDMRDKLNTFILKNPPESK 150
           C ACG+   +D   KL TFILKNPPE+ 
Sbjct: 129 CKACGYRGMLDTHHKLCTFILKNPPENS 156
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Length = 170 Back     alignment and structure
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Length = 148 Back     alignment and structure
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Length = 138 Back     alignment and structure
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Length = 139 Back     alignment and structure
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208 Back     alignment and structure
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Length = 177 Back     alignment and structure
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189 Back     alignment and structure
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182 Back     alignment and structure
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 100.0
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 100.0
2d74_B148 Translation initiation factor 2 beta subunit; prot 100.0
1nee_A138 EIF-2-beta, probable translation initiation factor 100.0
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 100.0
2ful_A177 EIF-5, eukaryotic translation initiation factor 5; 99.96
2iu1_A208 EIF5, eukaryotic translation initiation factor 5; 99.95
3jui_A182 Translation initiation factor EIF-2B subunit EPSI; 99.95
1paq_A189 Translation initiation factor EIF-2B epsilon subun 99.95
3d3m_A168 Eukaryotic translation initiation factor 4 gamma 2 99.89
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 99.81
1k8b_A52 EIF-2-beta, probable translation initiation factor 99.81
1k81_A36 EIF-2-beta, probable translation initiation factor 99.37
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 99.36
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 93.97
2ogh_A108 Eukaryotic translation initiation factor EIF-1; al 88.89
1qyp_A57 RNA polymerase II; transcription, RPB9, Zn ribbon, 83.68
1tfi_A50 Transcriptional elongation factor SII; transcripti 82.71
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 81.4
2pk7_A69 Uncharacterized protein; NESG, PLR1, putative tetr 81.28
2if1_A126 EIF1, SUI1; translation initiation factor; NMR {Ho 80.2
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.5e-65  Score=465.57  Aligned_cols=150  Identities=56%  Similarity=0.996  Sum_probs=145.4

Q ss_pred             CceeccCCCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEe
Q 013781            1 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNG   80 (436)
Q Consensus         1 Ma~ini~~~~~~D~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G   80 (436)
                      |+ ||| +++++||||||+||+|++++||+||||||+|+||.|||++|+|||+||+|||++||||+|+||++++||||||
T Consensus         1 ~~-~Ni-~~~~~D~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG   78 (170)
T 2g2k_A            1 LS-VNV-NRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG   78 (170)
T ss_dssp             CC-SCC-CSSCCSCCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEB
T ss_pred             Cc-ccc-cCCCCCccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence            64 999 9999999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             ccCHHHHHHHHHHHHhhccccCCCCCCCceEEEe-cCceeeeeccccCcccccCchhhhhhhhhcCCCccccc
Q 013781           81 SHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKA  152 (436)
Q Consensus        81 ~~~~~~l~~~l~~fi~~yVlC~~C~~peT~l~~~-k~~~~~~~C~aCG~~~~v~~~~kl~~~i~k~pp~~~~~  152 (436)
                      +|++.+||++|++||++||+|++|+||||.|+++ ++++++++|.|||++++|+++|||+|||+||||+.+++
T Consensus        79 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~~kl~t~i~knpp~~~~~  151 (170)
T 2g2k_A           79 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSDS  151 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSSSSHHHHHHTSCCCCCSS
T ss_pred             eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccccccccceeeeeeecCCCCCcc
Confidence            9999999999999999999999999999999996 68999999999999999999999999999999986653
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Back     alignment and structure
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Back     alignment and structure
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Back     alignment and structure
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Back     alignment and structure
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0 Back     alignment and structure
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Back     alignment and structure
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Back     alignment and structure
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Back     alignment and structure
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1 Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1 Back     alignment and structure
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 436
d1neea198 d.241.1.1 (A:1-98) Translation initiation factor 2 3e-21
d1paqa_161 a.118.1.14 (A:) Translation initiation factor eIF- 4e-15
d1k8ba_52 d.241.1.1 (A:) Translation initiation factor 2 bet 9e-13
d1ug3a2127 a.118.1.14 (A:1438-1564) Eukaryotic initiation fac 1e-12
d1neea237 g.59.1.1 (A:99-135) Zinc-binding domain of transla 4e-05
d1k81a_36 g.59.1.1 (A:) Zinc-binding domain of translation i 5e-04
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 98 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 85.9 bits (213), Expect = 3e-21
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 15 FYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTG 74
            R+++PK  + I+G     +T I N  ++A AL R   +  K+   ELG     +   G
Sbjct: 22 TKRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEG--G 75

Query: 75 TSLVNGSHDTAKLAGLLENFIKK 97
           +++ G      +   +E+++ K
Sbjct: 76 RAILQGKFTHFLINERIEDYVNK 98
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 Back     information, alignment and structure
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 52 Back     information, alignment and structure
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 37 Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 36 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
d1neea198 Translation initiation factor 2 beta, aIF2beta, N- 99.93
d1paqa_161 Translation initiation factor eIF-2b epsilon {Bake 99.91
d1k8ba_52 Translation initiation factor 2 beta, aIF2beta, N- 99.79
d1ug3a2127 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.57
d1neea237 Zinc-binding domain of translation initiation fact 99.4
d1k81a_36 Zinc-binding domain of translation initiation fact 99.31
d1h2vc3 310 CBP80, 80KDa nuclear cap-binding protein {Human (H 96.11
d1qypa_57 RBP9 subunit of RNA polymerase II {Archaeon Thermo 86.03
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 83.13
d1dl6a_58 Transcription initiation factor TFIIB, N-terminal 82.43
d1twfi272 RBP9 subunit of RNA polymerase II {Baker's yeast ( 81.97
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.93  E-value=2e-26  Score=191.65  Aligned_cols=83  Identities=24%  Similarity=0.419  Sum_probs=76.9

Q ss_pred             CCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEeccCHHHH
Q 013781            8 ADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKL   87 (436)
Q Consensus         8 ~~~~~D~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l   87 (436)
                      +.... ...||+||+|+++++|+    ||+|+||.+||++|+|+|+|++|||++||||+|++|  +|++||+|+|++..|
T Consensus        16 ~~~~~-~~~R~~mP~~~v~~eGk----kTii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~--~~~lii~G~~~~~~i   88 (98)
T d1neea1          16 PPEVF-ETKRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE--GGRAILQGKFTHFLI   88 (98)
T ss_dssp             CTTSC-CCCCCCCSCCCCCEETT----EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB--TTTEEEESSCSSSHH
T ss_pred             CcccC-CCcceecCCceEEEecc----eEEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEe--CCEEEEEeeeCHHHH
Confidence            44444 35799999999999998    999999999999999999999999999999999997  689999999999999


Q ss_pred             HHHHHHHHhh
Q 013781           88 AGLLENFIKK   97 (436)
Q Consensus        88 ~~~l~~fi~~   97 (436)
                      +++|++||++
T Consensus        89 ~~~l~~yI~e   98 (98)
T d1neea1          89 NERIEDYVNK   98 (98)
T ss_dssp             HHHHHHHHTH
T ss_pred             HHHHHHHhcC
Confidence            9999999975
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure