Query 013782
Match_columns 436
No_of_seqs 233 out of 1585
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2067 Mitochondrial processi 100.0 1.5E-80 3.2E-85 572.5 30.4 361 72-436 21-391 (472)
2 KOG0960 Mitochondrial processi 100.0 3.4E-58 7.4E-63 423.9 32.6 356 73-435 31-394 (467)
3 COG0612 PqqL Predicted Zn-depe 100.0 1.8E-47 4E-52 385.8 36.1 348 74-434 15-375 (438)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 1.3E-45 2.8E-50 381.0 41.5 330 78-424 2-347 (696)
5 PRK15101 protease3; Provisiona 100.0 3.3E-41 7.2E-46 371.2 36.9 341 73-428 41-401 (961)
6 KOG2583 Ubiquinol cytochrome c 100.0 6.5E-34 1.4E-38 264.2 33.5 348 75-433 22-370 (429)
7 PTZ00432 falcilysin; Provision 100.0 3.1E-34 6.8E-39 314.0 34.0 339 74-429 90-502 (1119)
8 COG1025 Ptr Secreted/periplasm 100.0 5.1E-30 1.1E-34 263.3 33.6 341 73-427 21-379 (937)
9 PRK15101 protease3; Provisiona 100.0 5.2E-30 1.1E-34 282.5 31.7 356 50-434 499-869 (961)
10 KOG0959 N-arginine dibasic con 100.0 1.2E-27 2.6E-32 250.0 33.9 332 74-419 26-376 (974)
11 COG1026 Predicted Zn-dependent 99.9 7.9E-22 1.7E-26 204.0 28.0 338 75-430 21-390 (978)
12 PF00675 Peptidase_M16: Insuli 99.9 7.7E-23 1.7E-27 175.6 15.7 146 86-231 1-148 (149)
13 PF05193 Peptidase_M16_C: Pept 99.9 2.7E-22 5.9E-27 177.4 16.7 174 237-423 1-184 (184)
14 COG1025 Ptr Secreted/periplasm 99.8 5.9E-18 1.3E-22 175.0 30.8 352 51-430 479-845 (937)
15 KOG2019 Metalloendoprotease HM 99.8 4.5E-18 9.8E-23 167.9 23.2 336 76-429 54-425 (998)
16 KOG0961 Predicted Zn2+-depende 99.8 2.4E-17 5.2E-22 162.6 23.8 334 82-435 27-392 (1022)
17 KOG0959 N-arginine dibasic con 99.7 4.2E-15 9.2E-20 156.5 31.5 327 77-430 511-860 (974)
18 COG1026 Predicted Zn-dependent 99.7 1.6E-15 3.5E-20 157.7 26.6 330 78-428 529-895 (978)
19 KOG2019 Metalloendoprotease HM 99.7 3.9E-15 8.4E-20 147.4 24.2 326 79-427 564-924 (998)
20 PTZ00432 falcilysin; Provision 99.7 7.4E-15 1.6E-19 162.0 26.9 325 80-428 664-1041(1119)
21 KOG0961 Predicted Zn2+-depende 98.6 1.4E-06 2.9E-11 87.7 15.9 326 89-433 555-923 (1022)
22 PF08367 M16C_assoc: Peptidase 98.5 2.4E-06 5.2E-11 79.5 13.7 114 72-188 67-193 (248)
23 PF03410 Peptidase_M44: Protei 98.1 0.00016 3.6E-09 70.2 16.5 187 79-287 2-197 (590)
24 PHA03081 putative metalloprote 97.9 0.00071 1.5E-08 66.1 15.8 186 79-286 2-196 (595)
25 KOG0960 Mitochondrial processi 96.1 0.17 3.6E-06 48.9 13.4 177 84-264 258-450 (467)
26 TIGR02110 PQQ_syn_pqqF coenzym 95.7 0.066 1.4E-06 56.9 10.1 82 301-399 611-692 (696)
27 PF00675 Peptidase_M16: Insuli 94.9 0.99 2.1E-05 38.0 13.3 112 302-433 9-122 (149)
28 COG0612 PqqL Predicted Zn-depe 94.2 1.7 3.7E-05 43.9 15.4 81 184-265 352-433 (438)
29 KOG2067 Mitochondrial processi 93.6 0.72 1.6E-05 44.8 10.3 162 96-262 264-442 (472)
30 PF09851 SHOCT: Short C-termin 87.4 0.85 1.8E-05 27.3 3.0 27 398-424 4-30 (31)
31 PF05193 Peptidase_M16_C: Pept 84.4 3.1 6.7E-05 35.6 6.5 108 84-196 67-184 (184)
32 PF08367 M16C_assoc: Peptidase 58.8 1.5E+02 0.0032 27.3 12.3 116 303-431 89-210 (248)
33 PF01729 QRPTase_C: Quinolinat 32.1 52 0.0011 28.5 3.3 42 233-274 104-147 (169)
34 COG5023 Tubulin [Cytoskeleton] 31.4 2.5E+02 0.0055 27.6 7.9 85 342-431 140-240 (443)
35 PF05120 GvpG: Gas vesicle pro 28.2 2E+02 0.0044 21.4 5.3 32 398-429 36-67 (79)
36 COG1125 OpuBA ABC-type proline 26.8 1E+02 0.0022 28.8 4.3 98 178-275 96-206 (309)
37 COG1761 RPB11 DNA-directed RNA 25.4 2E+02 0.0044 22.4 5.2 56 352-407 31-89 (99)
38 cd04916 ACT_AKiii-YclM-BS_2 AC 23.5 2.2E+02 0.0048 19.3 4.9 46 136-181 20-66 (66)
39 cd04922 ACT_AKi-HSDH-ThrA_2 AC 23.4 1.9E+02 0.0042 19.6 4.6 46 135-180 19-65 (66)
40 TIGR03142 cytochro_ccmI cytoch 23.4 2.3E+02 0.0051 22.6 5.5 40 393-432 39-78 (117)
41 KOG1374 Gamma tubulin [Cytoske 21.8 56 0.0012 31.9 1.7 45 326-370 118-174 (448)
42 COG3372 Predicted nuclease of 21.5 6.4E+02 0.014 25.0 8.7 30 116-145 65-95 (396)
43 KOG3432 Vacuolar H+-ATPase V1 21.3 2.3E+02 0.005 22.5 4.6 46 237-282 44-90 (121)
44 PRK05986 cob(I)alamin adenolsy 21.0 1.3E+02 0.0028 26.6 3.8 36 236-273 131-167 (191)
45 PF04444 Dioxygenase_N: Catech 20.2 1.7E+02 0.0038 21.4 3.7 37 390-426 3-39 (74)
No 1
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-80 Score=572.49 Aligned_cols=361 Identities=48% Similarity=0.733 Sum_probs=346.9
Q ss_pred CCCCeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEe
Q 013782 72 EPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILAS 151 (436)
Q Consensus 72 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 151 (436)
++.++++++|+||+||++++++++.+.++++|++|+++|.+...|++|++|+|+|++|.+++..++..+||.+||+++|+
T Consensus 21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq 100 (472)
T KOG2067|consen 21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ 100 (472)
T ss_pred ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 013782 152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (436)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 230 (436)
++||+++|.+++.+++++.++++|+|.+.+|+|++|+++.++..++.|+.+...+|+..+.+.+|.++| ++++|.+.++
T Consensus 101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c 180 (472)
T KOG2067|consen 101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC 180 (472)
T ss_pred ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ChhhhcCCCHHHHHHHhhhccCCCCeEEEEeCCCHHHHHHHHhhhcCCCCCC--CCCCCCCCCcCCCeeEEecC------
Q 013782 231 PESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRL--PPPTEPKSVYIGGDYRQQAD------ 302 (436)
Q Consensus 231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~~--~~~~~~~~~~~~~~~~~~~~------ 302 (436)
+++.|++|+.+.|.+|.+++|+|+||+++.|||+||++++.+++||++||+. ++...++.+|+||...++.|
T Consensus 181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~ 260 (472)
T KOG2067|consen 181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG 260 (472)
T ss_pred ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence 9999999999999999999999999999999999999999999999999984 34445678999997776654
Q ss_pred -CCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEE
Q 013782 303 -SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFG 381 (436)
Q Consensus 303 -~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~ 381 (436)
...+||+++|++++ ++++|++++.|||.+|||||||||||||||||||||.+|.++++|+|+|.|+++.|+|+|+|+
T Consensus 261 g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg 338 (472)
T KOG2067|consen 261 GPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG 338 (472)
T ss_pred ccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence 25899999999996 588899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCCCC
Q 013782 382 IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRKI 436 (436)
Q Consensus 382 i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~~~ 436 (436)
|+.+++|+++.+++..+.+|+..+.. | ++++||+|||+++++.++|||||++|
T Consensus 339 i~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V 391 (472)
T KOG2067|consen 339 IYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPV 391 (472)
T ss_pred EeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999987 4 99999999999999999999999987
No 2
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-58 Score=423.91 Aligned_cols=356 Identities=32% Similarity=0.549 Sum_probs=333.4
Q ss_pred CCCeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEee
Q 013782 73 PGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA 152 (436)
Q Consensus 73 ~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 152 (436)
.|++++++|+||++|+.+++...+++|++||++||++|++++.|.+|++|||+|+||++++...+..+++.+|+.+|+++
T Consensus 31 ~P~t~vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAyt 110 (467)
T KOG0960|consen 31 VPETEVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYT 110 (467)
T ss_pred CCcceEEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccc
Confidence 36889999999999999888777999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 013782 153 SREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAP 231 (436)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 231 (436)
+|+++.|+++++++++++++++|.|++.+..+.+.+++++|+.++.|+++...+-..+.+++||..+| ++|++++..|+
T Consensus 111 SReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp 190 (467)
T KOG0960|consen 111 SREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGP 190 (467)
T ss_pred cccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCC----CCCCCCCcCCCeeEEecC-CCc
Q 013782 232 ESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPP----PTEPKSVYIGGDYRQQAD-SPE 305 (436)
Q Consensus 232 ~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~----~~~~~~~~~~~~~~~~~~-~~~ 305 (436)
.+.|++|+.+||++|.+.||.++||+++.+| |+||++.+++++||++++..+. +..+++.|.|.+++...| .|.
T Consensus 191 ~enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd~lP~ 270 (467)
T KOG0960|consen 191 SENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDLPL 270 (467)
T ss_pred hhhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCCCCch
Confidence 9999999999999999999999999999999 9999999999999999874332 222345699999998766 899
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEE
Q 013782 306 THIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYAC 385 (436)
Q Consensus 306 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~ 385 (436)
+|+++++++.+ +.++|++++.|.++|+|.+..+-.||+-.+ |+|-+.+-+. +++.++.+|+..|.|+|+|++|+.
T Consensus 271 a~~AiAVEG~~--w~~pD~~~l~van~iiG~wdr~~g~g~~~~--s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~V 345 (467)
T KOG0960|consen 271 AHIAIAVEGVS--WAHPDYFALMVANTIIGNWDRTEGGGRNLS--SRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYFV 345 (467)
T ss_pred hheeeeEecCC--cCCccHHHHHHHHHHhhhhhcccCCccCCc--cHHHHHHHHH-HHHHHHhhhhcccccccceeEEEE
Confidence 99999999996 499999999999999999988777776655 9999888877 889999999999999999999999
Q ss_pred e-CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCCC
Q 013782 386 T-GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRK 435 (436)
Q Consensus 386 ~-~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~~ 435 (436)
| ++..+++++..+++++.+++. .+|+.|++|||++++.+++.+||+..
T Consensus 346 ~~~~~~iddl~~~vl~eW~rL~~--~vteaEV~RAKn~Lkt~Lll~ldgtt 394 (467)
T KOG0960|consen 346 TDNLTMIDDLIHSVLKEWMRLAT--SVTEAEVERAKNQLKTNLLLSLDGTT 394 (467)
T ss_pred ecChhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9 789999999999999999998 49999999999999999999999763
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=1.8e-47 Score=385.81 Aligned_cols=348 Identities=27% Similarity=0.444 Sum_probs=304.2
Q ss_pred CCeEEEEcCCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEee
Q 013782 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA 152 (436)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 152 (436)
++++..+|+||++++..+.+ .+.+++.+++++|+++|++...|++|++|||+|+||.+++..++.+.++..|+..|+++
T Consensus 15 ~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 35899999999999977777 68999999999999999999999999999999999999888899999999999999999
Q ss_pred CceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 013782 153 SREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAP 231 (436)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 231 (436)
+++.+.|++++++++++.+|+++.+++.+|.|++++|+++|..+.+|++...++|...+.+.++..+| ++|++++..|+
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~ 174 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGT 174 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCC-CCCCCCCC-CCcCCCee-EEe----cCC
Q 013782 232 ESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPR-LPPPTEPK-SVYIGGDY-RQQ----ADS 303 (436)
Q Consensus 232 ~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~-~~~~~~~~-~~~~~~~~-~~~----~~~ 303 (436)
++.|.+++.++|++||++||+|+||++++|| ++++++.++++++|++|+. .++..... +...+... .+. .+.
T Consensus 175 ~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T COG0612 175 EESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254 (438)
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCccccCCCceEEecCCCCchh
Confidence 9999999999999999999999999999999 9999999999999999997 22222222 22233322 221 335
Q ss_pred CceEEEEEeecCCCCCCCc-chHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEE
Q 013782 304 PETHIALAFEVPGGWLKDK-EAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (436)
Q Consensus 304 ~~~~v~~~~~~~~~~~~~~-~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i 382 (436)
.++++.++|+.+. ...+ +++++.+++.+|||+ ++||||+++|+++|++|+++++...+.+.+.+.+
T Consensus 255 ~~~~~~~g~~~~~--~~~~~~~~~~~l~~~llgg~-----------~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~ 321 (438)
T COG0612 255 EQAWLALGYPGPD--YDSPDDYAALLLLNGLLGGG-----------FSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSI 321 (438)
T ss_pred hhhhhhccccCcC--cCcchhhHHHHHHHHHhCCC-----------cchHHHHHHHHhcCceeeeccccccccccCCceE
Confidence 6888899999886 4444 889999999999986 4499999999999999999998888888899999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 383 YACTGSDFVSKAVDLVVRELILIATP--KQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~l~~l~~~--g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
++.+++.+..++.+.+.+++..+... +.+++++++++|..+...+....+++
T Consensus 322 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~ 375 (438)
T COG0612 322 YAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSP 375 (438)
T ss_pred EEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCH
Confidence 99998555555554444444444432 34999999999999999999988876
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.3e-45 Score=380.97 Aligned_cols=330 Identities=16% Similarity=0.155 Sum_probs=285.5
Q ss_pred EEEcCCCcEEEEee-CCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHH-HHHHHHHHcCCeeeEeeCce
Q 013782 78 VTTLENGIRIASET-SVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHL-RIVREVEAIGGSILASASRE 155 (436)
Q Consensus 78 ~~~L~NGl~v~~~~-~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~-~l~~~l~~~g~~~~~~~~~~ 155 (436)
.++|+||++|++.+ ...+.+++.++|++|+++|+++..|++|++|||+|+||++++.. ++.+.++.+|+.+|++++.|
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 47899999999644 45689999999999999999999999999999999999999985 79999999999999999999
Q ss_pred eEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 013782 156 QMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESA 234 (436)
Q Consensus 156 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 234 (436)
++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.+...+| +|||+++..|+.++
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~es 161 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDS 161 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcCCC---HHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCC--CCCcCCCeeEE-ecCCCceE
Q 013782 235 LNRLD---GTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP--KSVYIGGDYRQ-QADSPETH 307 (436)
Q Consensus 235 l~~l~---~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~--~~~~~~~~~~~-~~~~~~~~ 307 (436)
|+.++ .++|++||+++|.|+||+++|+| +++++++++++++|+.|+........ .+.+.+....+ ..+.++.+
T Consensus 162 L~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~ 241 (696)
T TIGR02110 162 LALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLRFDRLTLAGGSEPRLW 241 (696)
T ss_pred HhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCceeEEEecCcceEE
Confidence 99876 99999999999999999999999 99999999999999999865433221 22223332222 23456677
Q ss_pred EEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCc--eEEEEEE
Q 013782 308 IALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTG--LFGIYAC 385 (436)
Q Consensus 308 v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~--~f~i~~~ 385 (436)
+.++++..+ ..+++ .+.+++.+|+++. +++||.+||+ .|++|++++.. .+.+.+ .|.|++.
T Consensus 242 l~~~~p~~~--~~d~~--al~lL~~iLg~g~-----------sSrL~~~LRe-~GLaysV~s~~-~~~~~g~~lf~I~~~ 304 (696)
T TIGR02110 242 LLFALAGLP--ATARD--NVTLLCEFLQDEA-----------PGGLLAQLRE-RGLAESVAATW-LYQDAGQALLALEFS 304 (696)
T ss_pred EEEeecCCC--CCChH--HHHHHHHHhCCCc-----------chHHHHHHHH-CCCEEEEEEec-cccCCCCcEEEEEEE
Confidence 777766554 34443 5899999999874 4999999997 79999999865 455555 8999999
Q ss_pred e---CcchHHHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHH
Q 013782 386 T---GSDFVSKAVDLVVRELILIATPK-QVTQVQLNRAKEATK 424 (436)
Q Consensus 386 ~---~p~~~~~~~~~~~~~l~~l~~~g-~~~~~el~~aK~~l~ 424 (436)
+ .+++..++++.+.++|..+++++ +++.+|++++|+.-.
T Consensus 305 lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~~~ 347 (696)
T TIGR02110 305 ARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQRRF 347 (696)
T ss_pred EcCCCccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 7 35689999999999999998872 399999999999843
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=3.3e-41 Score=371.23 Aligned_cols=341 Identities=16% Similarity=0.160 Sum_probs=293.6
Q ss_pred CCCeEEEEcCCCcEEEE-eeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCC-HHHHHHHHHHcCCeeeE
Q 013782 73 PGKVKVTTLENGIRIAS-ETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS-HLRIVREVEAIGGSILA 150 (436)
Q Consensus 73 ~~~~~~~~L~NGl~v~~-~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~~ 150 (436)
...++.++|+||++|++ .+...+.+.+.+++++|+.+|+++..|++|++|||+|+||.+++ ..++.+.++.+||.+|+
T Consensus 41 ~~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA 120 (961)
T PRK15101 41 PRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNA 120 (961)
T ss_pred ccceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccc
Confidence 35788999999999994 55557899999999999999999999999999999999999996 67899999999999999
Q ss_pred eeCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 013782 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLL 229 (436)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 229 (436)
+++.+.+.|++++++++++.+|+++.+++.+|.|++++++++|..+.+|++...++|...+.+.+...+| +|||+++..
T Consensus 121 ~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~ 200 (961)
T PRK15101 121 STASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSG 200 (961)
T ss_pred eECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999998888999999999999999 999999999
Q ss_pred CChhhhcCC----CHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC--CCCCcC---CCee-E
Q 013782 230 APESALNRL----DGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--PKSVYI---GGDY-R 298 (436)
Q Consensus 230 ~~~~~l~~l----~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~--~~~~~~---~~~~-~ 298 (436)
|+.++|..+ +.++|++||++||.|+||+++|+| ++++++.++++++|++||....+.. ..+.+. .+.. .
T Consensus 201 G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (961)
T PRK15101 201 GNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIIIH 280 (961)
T ss_pred CCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeEEE
Confidence 999999997 699999999999999999999999 9999999999999999987543211 112221 1222 2
Q ss_pred EecCCCceEEEEEeecCCCCCC-CcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccc--C
Q 013782 299 QQADSPETHIALAFEVPGGWLK-DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIF--N 375 (436)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~--~ 375 (436)
.....++..+.+.|..|+ .. ..+.....++..+|+++++ +.|+.+|+ +.||+|+++++...+ .
T Consensus 281 ~~~~~~~~~l~l~~~~p~--~~~~~~~~~~~~l~~ll~~~~~-----------g~l~~~L~-~~gla~~v~s~~~~~~~~ 346 (961)
T PRK15101 281 YVPAQPRKVLRVEFRIDN--NSAKFRSKTDEYISYLIGNRSP-----------GTLSDWLQ-KQGLAEGISAGADPMVDR 346 (961)
T ss_pred EEECCCCcEEEEEEecCC--cHHHHhhCHHHHHHHHhcCCCC-----------CcHHHHHH-HcCccceeeeccccccCC
Confidence 223356778889999875 22 2233457889999997643 56776665 779999999886543 4
Q ss_pred CCceEEEEEEeCcc---hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 013782 376 NTGLFGIYACTGSD---FVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVL 428 (436)
Q Consensus 376 ~~~~f~i~~~~~p~---~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~ 428 (436)
+.+.|.|++.+.++ +..++++.+.++|..++++| ++++||+++|+.+..++.
T Consensus 347 ~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g-~~~~el~~~k~~~~~~~~ 401 (961)
T PRK15101 347 NSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKG-IDKSYFDELAHVLDLDFR 401 (961)
T ss_pred CceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhcccc
Confidence 67899999999884 78999999999999999988 999999999999877663
No 6
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=100.00 E-value=6.5e-34 Score=264.21 Aligned_cols=348 Identities=28% Similarity=0.414 Sum_probs=294.8
Q ss_pred CeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeCc
Q 013782 75 KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR 154 (436)
Q Consensus 75 ~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 154 (436)
..+..+|.||++|...+.++++..+.+.|++||+||+..+.|++||++...++.|.+++...|.+..+..|+.++..++|
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tR 101 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATR 101 (429)
T ss_pred hhhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeec
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHH-HHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCChh
Q 013782 155 EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEEL-RKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPES 233 (436)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~-~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 233 (436)
|.+.|++++++++++..|++|.+.+.+|.|.+||++... ..+..++. ..+|...+.+.||+++|.+.+|+++|.+..
T Consensus 102 e~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~--~~t~~~~a~e~lH~aAfRngLgnslY~p~~ 179 (429)
T KOG2583|consen 102 ELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLA--YQTPYTIAIEQLHAAAFRNGLGNSLYSPGY 179 (429)
T ss_pred ceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhh--hcChHHHHHHHHHHHHHhcccCCcccCCcc
Confidence 999999999999999999999999999999999999988 66655554 478999999999999994489999999888
Q ss_pred hhcCCCHHHHHHHhhhccCCCCeEEEEeCCCHHHHHHHHhhhcCCCCCCCCCCCCCCCcCCCeeEEecCCCceEEEEEee
Q 013782 234 ALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFE 313 (436)
Q Consensus 234 ~l~~l~~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 313 (436)
.+.+++.++|.+|.+++|...|++++.+|+||+.++..+++++ .++...+....+..|.+++.|........|++++-+
T Consensus 180 ~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~~~L~~~~~~~~-~~~~~~~~k~a~a~~~gGe~Rk~~~g~~~~v~vage 258 (429)
T KOG2583|consen 180 QVGSVSSSELKDFAAKHFVKGNAVLVGVNVDHDDLKQFADEYA-PIRDGLPLKPAPAKYSGGEARKDARGNRVHVAVAGE 258 (429)
T ss_pred cccCccHHHHHHHHHHHhhccceEEEecCCChHHHHHHHHHhc-cccCCCCCCCCCccccCCccccccCCceeEEEEecC
Confidence 9999999999999999999999999999999999999999983 333333333344568899988888888888888776
Q ss_pred cCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEeCcchHHH
Q 013782 314 VPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSK 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~~p~~~~~ 393 (436)
+-.. .+.+...+..++.++|+... |=|--.+.|-+..-..-+..-++++++.+|.|.|+|++|+.....++.+
T Consensus 259 gAAa-~~~k~~~a~av~~~~Lg~~~------~~k~~t~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a~~ 331 (429)
T KOG2583|consen 259 GAAA-GNLKVLAAQAVLLAALGNSA------PVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQGSQAGK 331 (429)
T ss_pred cccc-cchHHHHHHHHHHHHHhccc------ccccccchHHHHHhhccccCceeeeecccccCCceEEEEEEecCccHHH
Confidence 6542 36789999999999999642 1010013444333333334557788999999999999999999888999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 013782 394 AVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLES 433 (436)
Q Consensus 394 ~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les 433 (436)
++......+...+..+ ++-.....+++.++...++..+.
T Consensus 332 ~v~s~v~~lks~~~~~-id~~~~~a~~~~l~~~~~ss~~a 370 (429)
T KOG2583|consen 332 VVSSEVKKLKSALVSD-IDNAKVKAAIKALKASYLSSVEA 370 (429)
T ss_pred HHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhcchHH
Confidence 9999999998887766 88888888888887777765543
No 7
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=3.1e-34 Score=314.00 Aligned_cols=339 Identities=12% Similarity=0.117 Sum_probs=275.2
Q ss_pred CCeEEEEcCCCcEEEEeeCCC---CeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcC--Cee
Q 013782 74 GKVKVTTLENGIRIASETSVS---PAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIG--GSI 148 (436)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~~---~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g--~~~ 148 (436)
..+.....+||++|++...+. +...+.++|+.|+. +..|++|++|||+|+|+++++..++...++..| +.+
T Consensus 90 ~~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~----d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~l 165 (1119)
T PTZ00432 90 VATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPH----NDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFL 165 (1119)
T ss_pred EEEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCCC----CCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCc
Confidence 456777788999999655544 47899999999973 457999999999999999999999999998866 779
Q ss_pred eEeeCceeEEEEEEccCC-CHHHHHHHHHHhhhCCCCCHHHH--HH---------H--------------------HHHH
Q 013782 149 LASASREQMGYSFDALKT-YVPEMVELLVDCVRNPVFLDWEV--NE---------E--------------------LRKL 196 (436)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~-~l~~~l~ll~~~~~~p~f~~~~~--~~---------~--------------------~~~~ 196 (436)
||+++.|+++|.+++..+ ++..+|+++.|++.+|.|+++++ .+ . +..+
T Consensus 166 NA~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV 245 (1119)
T PTZ00432 166 NAYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIV 245 (1119)
T ss_pred cccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHH
Confidence 999999999999999885 69999999999999999988763 22 1 6678
Q ss_pred HHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhh
Q 013782 197 KSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPL 275 (436)
Q Consensus 197 ~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~ 275 (436)
..|++...++|...+.+.+...+|+|||+++..|++++|..++.+++++||++||+|+|++++++| ++++++.++++++
T Consensus 246 ~~Emk~~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~ 325 (1119)
T PTZ00432 246 YSEMKKRFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNY 325 (1119)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999999888889999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCCCCC--------CCC-CC--CcCCCeeEEe-----cCCCceEEEEE-eecCCCC----------CCCcchHHHH
Q 013782 276 LSDLPRLPPP--------TEP-KS--VYIGGDYRQQ-----ADSPETHIALA-FEVPGGW----------LKDKEAIILT 328 (436)
Q Consensus 276 ~~~lp~~~~~--------~~~-~~--~~~~~~~~~~-----~~~~~~~v~~~-~~~~~~~----------~~~~~~~~~~ 328 (436)
|+.+|+.... ... .+ .+..+..++. .+..+.++.++ |..++.. .+.++..++.
T Consensus 326 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~ 405 (1119)
T PTZ00432 326 LTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALL 405 (1119)
T ss_pred HhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHH
Confidence 9888754210 000 11 1111212111 12345666665 9774210 1236899999
Q ss_pred HHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEE-EeeecccCCCceEEEEEE-eCc-------chHHHHHHHHH
Q 013782 329 VLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSF-SAFNSIFNNTGLFGIYAC-TGS-------DFVSKAVDLVV 399 (436)
Q Consensus 329 vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~-~a~~~~~~~~~~f~i~~~-~~p-------~~~~~~~~~~~ 399 (436)
||+.+|+|+.+ |+|++.||+ .|++|++ ++++....+.+.|.|++. +++ +++.++.+.+.
T Consensus 406 VLs~lLggg~s-----------S~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~ 473 (1119)
T PTZ00432 406 VLNYLLLGTPE-----------SVLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVL 473 (1119)
T ss_pred HHHHHHcCCCc-----------cHHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHH
Confidence 99999998755 999999996 6999996 445555667788988886 442 34779999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 013782 400 RELILIATPKQVTQVQLNRAKEATKSAVLM 429 (436)
Q Consensus 400 ~~l~~l~~~g~~~~~el~~aK~~l~~~l~~ 429 (436)
++|.++.++| +++++|++|++++.-++..
T Consensus 474 ~~L~~l~~eG-i~~eele~a~~qlef~~rE 502 (1119)
T PTZ00432 474 NALTKVVTEG-FNKSAVEASLNNIEFVMKE 502 (1119)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHhhh
Confidence 9999999988 9999999999998777653
No 8
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-30 Score=263.28 Aligned_cols=341 Identities=19% Similarity=0.231 Sum_probs=287.4
Q ss_pred CCCeEEEEcCCCcEEE-EeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCC-HHHHHHHHHHcCCeeeE
Q 013782 73 PGKVKVTTLENGIRIA-SETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS-HLRIVREVEAIGGSILA 150 (436)
Q Consensus 73 ~~~~~~~~L~NGl~v~-~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~~ 150 (436)
..+++..+|+||+++. +.+...+++...+.|+.|+..+|.+..|+||++|||+|.|+++++ ...+..+|..+||..||
T Consensus 21 ~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA 100 (937)
T COG1025 21 DRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNA 100 (937)
T ss_pred CcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCcccc
Confidence 3689999999999998 677777899999999999999999999999999999999999987 56799999999999999
Q ss_pred eeCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 013782 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLL 229 (436)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 229 (436)
++..+.|+|.++...+.++.+|+.+++++.+|.|+++..++++..+.+|......+-...+++.....+- +||+.+...
T Consensus 101 ~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~ 180 (937)
T COG1025 101 STAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFST 180 (937)
T ss_pred ccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCC
Confidence 9999999999999999999999999999999999999999999999999998888888888888888888 999999999
Q ss_pred CChhhhcC----CCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCCC--CCcC----CCeeE
Q 013782 230 APESALNR----LDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK--SVYI----GGDYR 298 (436)
Q Consensus 230 ~~~~~l~~----l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~~--~~~~----~~~~~ 298 (436)
|+.+.|.. ...++|.+||++||.+++|+++|.| -+.+++.+++.++|+++|......+.. |++. +.-.+
T Consensus 181 GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ii~ 260 (937)
T COG1025 181 GNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIH 260 (937)
T ss_pred CChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCceEE
Confidence 99999988 5579999999999999999999999 999999999999999999655433322 3332 23344
Q ss_pred EecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccC-CC
Q 013782 299 QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFN-NT 377 (436)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~-~~ 377 (436)
+....+.-.+.+.|..++. ...-..-....+..++|..+ || +.+ ....+.||+-++.++...+. +.
T Consensus 261 i~p~~~~~~L~i~f~i~~~-~~~~~~~~~~~~s~Lig~es------~g----sL~--~~Lk~~Glit~l~a~~~~~~~n~ 327 (937)
T COG1025 261 IVPAKPRPRLRIYFPIDDN-SAKFRSKPDEYLSHLIGNES------PG----SLL--AWLKKQGLITELSAGLDPISGNY 327 (937)
T ss_pred eccCCCCceEEEEEEcCCc-ccccccCCHHHHHHHhccCC------Cc----hHH--HHHHhccchhhhccccccccCCc
Confidence 4444677888899999873 22223566788889998763 33 443 44566799999999987665 78
Q ss_pred ceEEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 013782 378 GLFGIYACTG---SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAV 427 (436)
Q Consensus 378 ~~f~i~~~~~---p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l 427 (436)
+.|.|.+.-. -.+.++++..+.+.|.-+..+| +....++...+-.-..+
T Consensus 328 ~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~-~~~~~f~Elq~v~~l~f 379 (937)
T COG1025 328 GVFAISYELTDKGLAHYDRVIALTFQYLNLLREKG-IPKYTFDELQNVLDLDF 379 (937)
T ss_pred ceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhh
Confidence 8888886543 4678899999999999999888 88888887766544433
No 9
>PRK15101 protease3; Provisional
Probab=99.97 E-value=5.2e-30 Score=282.54 Aligned_cols=356 Identities=10% Similarity=0.053 Sum_probs=275.2
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCeEEEEcCCCcEEEE-eeC---CCCeEEEEEEEeccccCCCCCCCchHHHHHHhh
Q 013782 50 SLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIAS-ETS---VSPAASIGLYLDFGSVYETPSSCGASNLLEKMA 125 (436)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~NGl~v~~-~~~---~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~ 125 (436)
.+|+.|..+|......+.... ...++.++++||++||. +++ ..|++.+.+.+.+|...+++...|++.|+..|+
T Consensus 499 ~lP~~n~fip~~~~~~~~~~~--~~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll 576 (961)
T PRK15101 499 SLPELNPYIPDDFSLIKADKA--YKHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA 576 (961)
T ss_pred CCCCCCCccCCCCeeccCCCC--CCCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 346677767655422222222 23468899999999994 555 368999999999999999999999999999997
Q ss_pred cccCCCCCHHHHHHHHHHcCCeeeEeeCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhc-
Q 013782 126 FKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELH- 204 (436)
Q Consensus 126 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~- 204 (436)
+.+..++.+..+..|..++.. +.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|+.+.+++++..
T Consensus 577 -----~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~ 650 (961)
T PRK15101 577 -----GLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEK 650 (961)
T ss_pred -----HHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 556667778888899999999 7999999999999999999999999999999999999999999999998654
Q ss_pred CChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCC
Q 013782 205 NNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRL 282 (436)
Q Consensus 205 ~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~ 282 (436)
..|...+...+ ..| .||++.+ .+..+.|+++|.+++++||+++|.+.+++++++| ++.+++.++++++++.++..
T Consensus 651 ~~~~~~~~~~~--~~~~~~py~~~-~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~ 727 (961)
T PRK15101 651 GKAYEQAIMPA--QMLSQVPYFER-DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGAD 727 (961)
T ss_pred cCcHHHHHHHH--HHHhcCCCCCH-HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccC
Confidence 34443333322 235 8898864 5688999999999999999999999999999999 99999999999988888643
Q ss_pred CCCC-CC--CCCcCCCeeEEe--cCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHH
Q 013782 283 PPPT-EP--KSVYIGGDYRQQ--ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRV 357 (436)
Q Consensus 283 ~~~~-~~--~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~l 357 (436)
+... .. .....+...... ....+..+.++|..++ . +.....++..||+|+ |++|||++|
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~---~~~~~~v~~~lLg~~-----------~ssrlf~~L 791 (961)
T PRK15101 728 GTEWWRGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTG--Y---DEYQSSAYSSLLGQI-----------IQPWFYNQL 791 (961)
T ss_pred CcccccccceEeCCCCeEEEecCCCCCCCeEEEEEEeCC--C---CCHHHHHHHHHHHHH-----------HhHHHHHHH
Confidence 2211 10 001111222222 2244455666665443 2 236778888888875 559999999
Q ss_pred HhhcCCeEEEEeeecccCCCceEEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 358 LNEYQQIQSFSAFNSIFNNTGLFGIYACTG---SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 358 Re~~~~~Ys~~a~~~~~~~~~~f~i~~~~~---p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
|++.|++|+|+++.....+.+.+.++++++ |+.+.+.++.+.+++.+... + +|++||+++|+++++++....++.
T Consensus 792 Rtk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~-~-lt~eE~~~~k~~l~~~~~~~~~sl 869 (961)
T PRK15101 792 RTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLR-A-MKPEEFAQYQQALINQLLQAPQTL 869 (961)
T ss_pred HHHhhhceEEEEEeeccCCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCH
Confidence 999999999999988777767777777654 67788888888888655444 5 999999999999999999888763
No 10
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-27 Score=250.04 Aligned_cols=332 Identities=17% Similarity=0.190 Sum_probs=275.1
Q ss_pred CCeEEEEcCCCcEEE-EeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCC-HHHHHHHHHHcCCeeeEe
Q 013782 74 GKVKVTTLENGIRIA-SETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS-HLRIVREVEAIGGSILAS 151 (436)
Q Consensus 74 ~~~~~~~L~NGl~v~-~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~~~ 151 (436)
..++..+|+||+++. ..+...++++..+-|+.||..|+.+..|+||++|||+|.||.+++ ..++.+.+...||.-||+
T Consensus 26 r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~ 105 (974)
T KOG0959|consen 26 REYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAY 105 (974)
T ss_pred cceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccc
Confidence 488999999999998 556446689999999999999999999999999999999999987 557899999999999999
Q ss_pred eCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 013782 152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (436)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 230 (436)
+..+.|.|++....++++.+|+.+++++..|.|+++.+++++.++..|.+...++-.....+.....+- +||+++...|
T Consensus 106 T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tG 185 (974)
T KOG0959|consen 106 TDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTG 185 (974)
T ss_pred cccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhcccc
Confidence 999999999999999999999999999999999999999999999999998888888888888888888 9999999999
Q ss_pred ChhhhcCCC-----HHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC--CCCCc----CCCeeE
Q 013782 231 PESALNRLD-----GTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--PKSVY----IGGDYR 298 (436)
Q Consensus 231 ~~~~l~~l~-----~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~--~~~~~----~~~~~~ 298 (436)
+.+.|.... .+.|.+||++||.+++|+++|+| .+.+++..++...|+.++....+.+ +.+++ .+...+
T Consensus 186 N~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~~~e~~~~~~~ 265 (974)
T KOG0959|consen 186 NKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKLVR 265 (974)
T ss_pred chhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCCChHHhCcEEE
Confidence 999999998 99999999999999999999999 9999999999999999976554432 11222 233344
Q ss_pred EecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecc-cCCC
Q 013782 299 QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSI-FNNT 377 (436)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~-~~~~ 377 (436)
+..-..-..+.+.|..|+. ...-+.-....+..++|.. ||| |.+ ..|+. .||+-++.++... ..+.
T Consensus 266 v~pik~~~~l~is~~~p~~-~~~y~~kP~~y~~hLighe------g~G----SL~-~~Lk~-~gw~~sl~a~~~~~as~~ 332 (974)
T KOG0959|consen 266 VVPIKDGRSLMISWPVPPL-NHHYKSKPLRYLSHLIGHE------GPG----SLL-SYLKR-LGWATSLEAGIPEFASGY 332 (974)
T ss_pred EEeccccceEEEEEecCCc-ccccccCcHHHHHHHhccC------Ccc----hHH-HHHHH-hhchheeecCCCcccccc
Confidence 4444556677788999874 3445666778888899875 343 444 46664 5999999998773 3356
Q ss_pred ceEEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013782 378 GLFGIYACTG---SDFVSKAVDLVVRELILIATPKQVTQVQLNRA 419 (436)
Q Consensus 378 ~~f~i~~~~~---p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~a 419 (436)
+.|.|.+.-. -+++++++..+.+.+.-+...| ..+.-++.-
T Consensus 333 ~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~-~~~~i~~E~ 376 (974)
T KOG0959|consen 333 SFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAG-PEKWIFKEL 376 (974)
T ss_pred ceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcC-chhHHHHHH
Confidence 7777776543 3578999999999999888766 555545443
No 11
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.90 E-value=7.9e-22 Score=204.04 Aligned_cols=338 Identities=11% Similarity=0.118 Sum_probs=267.6
Q ss_pred CeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHH--cCCeeeEee
Q 013782 75 KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEA--IGGSILASA 152 (436)
Q Consensus 75 ~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~--~g~~~~~~~ 152 (436)
.+....-++|++++.-.++.+.....+.|+.- +.+..|++|.|||+.+.|+.+++..+.--.+.. ++--+||.+
T Consensus 21 ~~~~~H~~TGa~l~hi~~~d~~~vFsi~F~T~----p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T 96 (978)
T COG1026 21 GYILEHEKTGAELAHIKNEDPNNVFSIAFKTE----PHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFT 96 (978)
T ss_pred eEEEeeccCCceEEEecCCCcCceEEEEeecC----CCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhcc
Confidence 45555556999999777777777777777654 556789999999999999999987775444433 344489999
Q ss_pred CceeEEEEEEcc-CCCHHHHHHHHHHhhhCCCCCHHHHHHHH--------------HHHHHHhhhhcCChHHHHHHHHHH
Q 013782 153 SREQMGYSFDAL-KTYVPEMVELLVDCVRNPVFLDWEVNEEL--------------RKLKSELGELHNNPQGLLLEAIHS 217 (436)
Q Consensus 153 ~~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~f~~~~~~~~~--------------~~~~~e~~~~~~~p~~~~~~~l~~ 217 (436)
..|.|+|.+++. .++.-.+|.+..|.+.+|.+.++.|.++- ..+..|++....++..++++.+.+
T Consensus 97 ~~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~ 176 (978)
T COG1026 97 FPDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQ 176 (978)
T ss_pred CCCcceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHH
Confidence 999999998665 58899999999999999999999998763 345567777789999999999999
Q ss_pred Hhc-CCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhh-cCCCCCCCCCCCCC--CCc
Q 013782 218 TGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPL-LSDLPRLPPPTEPK--SVY 292 (436)
Q Consensus 218 ~~~-~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~-~~~lp~~~~~~~~~--~~~ 292 (436)
.+| ...|+...-|.+..|..++.+++++||+++|+|+|+.++++| ++.++....++.. +...++.....+.+ ..+
T Consensus 177 slfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~ 256 (978)
T COG1026 177 SLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAF 256 (978)
T ss_pred hhCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCccccc
Confidence 999 888999899999999999999999999999999999999999 9999999999976 55555433211111 111
Q ss_pred ---CCC--eeEE---ecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCe
Q 013782 293 ---IGG--DYRQ---QADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQI 364 (436)
Q Consensus 293 ---~~~--~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~ 364 (436)
... ...+ ..+..+..+.+.|.++.. .+..+..++.||..+|-++.+ ++|+++|.|. |++
T Consensus 257 ~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~~-~d~~~~lal~vL~~iLl~~~a-----------sPl~~~lies-glg 323 (978)
T COG1026 257 KKPRRKVLEYPISFDEEDEDQGLLSLSWLGGSA-SDAEDSLALEVLEEILLDSAA-----------SPLTQALIES-GLG 323 (978)
T ss_pred CcccccceeeccCCCCCCCceeEEEEEEecCCc-ccHHHHHHHHHHHHHHccCcc-----------cHHHHHHHHc-CCC
Confidence 111 1112 133678899999999874 466789999999999999877 9999999986 555
Q ss_pred -EEEEeeecccCCCceEEEEEE-eCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh
Q 013782 365 -QSFSAFNSIFNNTGLFGIYAC-TGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN 430 (436)
Q Consensus 365 -Ys~~a~~~~~~~~~~f~i~~~-~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~ 430 (436)
+.+...+...--...|.+.++ ++.+++++.-+.+++.|+.+..+| ++.+.++.++.++.-++...
T Consensus 324 ~~~~~g~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~~g-i~~~~ie~~~~q~E~s~ke~ 390 (978)
T COG1026 324 FADVSGSYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNG-IDKKLIEAILHQLEFSLKEV 390 (978)
T ss_pred cccccceeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhhh
Confidence 444433443334556666665 556889999999999999999999 99999999999988877665
No 12
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.90 E-value=7.7e-23 Score=175.59 Aligned_cols=146 Identities=35% Similarity=0.560 Sum_probs=138.5
Q ss_pred EEEEe-eCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeCceeEEEEEEcc
Q 013782 86 RIASE-TSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDAL 164 (436)
Q Consensus 86 ~v~~~-~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 164 (436)
||++. ++..+.+.+.+++++|+++|++...|++|+++||+++|+.+++..++.+.++..|+.++++++++.+.|.++++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~ 80 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVL 80 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEe
Confidence 67754 44688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 013782 165 KTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAP 231 (436)
Q Consensus 165 ~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 231 (436)
+++++.+|++|.+++.+|.|++++|+++|..+..++++...+|...+.+.+++.+| ++||+++.+|+
T Consensus 81 ~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 81 SEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp GGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred cccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 99999998876
No 13
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.89 E-value=2.7e-22 Score=177.37 Aligned_cols=174 Identities=24% Similarity=0.369 Sum_probs=145.5
Q ss_pred CCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCC---CCCC-CC--C--CcCCCeeEEe-cCCCce
Q 013782 237 RLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLP---PPTE-PK--S--VYIGGDYRQQ-ADSPET 306 (436)
Q Consensus 237 ~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~---~~~~-~~--~--~~~~~~~~~~-~~~~~~ 306 (436)
+||.++|++||+++|+|+||+++++| ++++++.++++++|+.||... .... .. + ...+...... .+.+.+
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQS 80 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSE
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999999999 999999999999999998653 1111 11 1 1222222333 334899
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEe
Q 013782 307 HIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (436)
Q Consensus 307 ~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~ 386 (436)
.+.++|..++. .+.++..++.++..+|+++ ++++|+..||++.+++|++++++..+.+.+.|.+++++
T Consensus 81 ~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-----------~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~ 148 (184)
T PF05193_consen 81 IVSIAFPGPPI-KDSKDYFALNLLSSLLGNG-----------MSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQV 148 (184)
T ss_dssp EEEEEEEEEET-GTSTTHHHHHHHHHHHHCS-----------TTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEE
T ss_pred ccccccccccc-cccchhhHHHHHHHHHhcC-----------ccchhHHHHHhccccceEEEeeeeccccceEEEEEEEc
Confidence 99999999972 2889999999999999986 45999999999999999999998777788999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 013782 387 GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEAT 423 (436)
Q Consensus 387 ~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l 423 (436)
.+++..++++.+.+++..+.+.| ++++||+++|+++
T Consensus 149 ~~~~~~~~~~~~~~~l~~l~~~~-~s~~el~~~k~~L 184 (184)
T PF05193_consen 149 TPENLDEAIEAILQELKRLREGG-ISEEELERAKNQL 184 (184)
T ss_dssp EGGGHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHhcC
Confidence 99999999999999999999987 9999999999975
No 14
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.9e-18 Score=174.97 Aligned_cols=352 Identities=12% Similarity=0.102 Sum_probs=265.1
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCeEEEEcCCCcEEE-EeeCC--C-CeEEEEEEEeccccCCCCCCCchHHHHHHhhc
Q 013782 51 LPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIA-SETSV--S-PAASIGLYLDFGSVYETPSSCGASNLLEKMAF 126 (436)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~NGl~v~-~~~~~--~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~ 126 (436)
+|..|+.+|..... +...-....++...=..|.++| .++.. . |+..+.+.|++..+..++....+..|+..++.
T Consensus 479 lP~~N~fIp~~~~~--~~~~~~~~~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~ 556 (937)
T COG1025 479 LPEPNPFIPDDVSL--IKSEKKFTFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLAN 556 (937)
T ss_pred CCCCCCCCCccccc--cccccCCCCchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHH
Confidence 45566666654312 1111111223333434566776 43333 4 89999999999999988877778888888873
Q ss_pred ccCCCCCHHHHHHHHHHcCCeeeEeeCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhh-hcC
Q 013782 127 KSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGE-LHN 205 (436)
Q Consensus 127 ~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~-~~~ 205 (436)
....++.+.+...|..++...+.++..++++|+++.++.+++.+.+.+.+-.++++.|+..|+.+.++++. ...
T Consensus 557 -----dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~ 631 (937)
T COG1025 557 -----DALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTG 631 (937)
T ss_pred -----HHHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 33344555677788999999999999999999999999999999999999999999999999999999994 558
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCC
Q 013782 206 NPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPP 284 (436)
Q Consensus 206 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~ 284 (436)
.|..++.+.+....- +...+..-..+.++.++.+++.+|....+++....+.++| ++.+++.++++.....++....
T Consensus 632 ~p~~~~~~~l~~l~~--~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s 709 (937)
T COG1025 632 KPYRQALDGLTGLLQ--VPYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGS 709 (937)
T ss_pred CCHHHHHHHhhhhhC--CCCcCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCC
Confidence 899999888887765 3333333345778999999999999999999999999999 9999999999987766665443
Q ss_pred CCCCC-C--CcCCCeeEE--ecCCCceEEEEEeecCCCCCC-CcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHH
Q 013782 285 PTEPK-S--VYIGGDYRQ--QADSPETHIALAFEVPGGWLK-DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVL 358 (436)
Q Consensus 285 ~~~~~-~--~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lR 358 (436)
..... + ...++.... ..+.+.+.....+..-. ++ .++.+...++.+++. ..+|.+||
T Consensus 710 ~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~--~~~~~~~a~s~Ll~~l~~---------------~~ff~~LR 772 (937)
T COG1025 710 TWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQ--YDEIKSSALSSLLGQLIH---------------PWFFDQLR 772 (937)
T ss_pred cccCCCceeccCCCeeEeeeccCCcccccceeEeccc--cchHHHHHHHHHHHHHHh---------------HHhHHHhh
Confidence 22111 1 223333222 22333333333333333 44 566666677888877 99999999
Q ss_pred hhcCCeEEEEeeecccCCCceEEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh
Q 013782 359 NEYQQIQSFSAFNSIFNNTGLFGIYACTG---SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN 430 (436)
Q Consensus 359 e~~~~~Ys~~a~~~~~~~~~~f~i~~~~~---p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~ 430 (436)
+|.|++|.|++++....++..+.|+++++ |+.+.+.++.+++.+..... ++++++|+..|+.++.+++.-
T Consensus 773 TkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~--~ms~e~Fe~~k~alin~il~~ 845 (937)
T COG1025 773 TKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELR--EMSEEDFEQIKKALINQILQP 845 (937)
T ss_pred hhhhcceEEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHcc
Confidence 99999999999999888888888888886 66888999999999988877 499999999999999998764
No 15
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.5e-18 Score=167.90 Aligned_cols=336 Identities=12% Similarity=0.114 Sum_probs=262.8
Q ss_pred eEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHH-HHHHHHH-cCCeeeEeeC
Q 013782 76 VKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLR-IVREVEA-IGGSILASAS 153 (436)
Q Consensus 76 ~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~-l~~~l~~-~g~~~~~~~~ 153 (436)
+....-.-|.+++.-+.+.+.-.+++.|+.. +.+..|+.|++||....|+.+++-.+ +.+.|.. +.--+|+.+.
T Consensus 54 v~lkH~~Tgae~lhl~reD~N~vFsI~FrTp----p~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~ 129 (998)
T KOG2019|consen 54 VLLKHKKTGAEVLHLDREDENNVFSIVFRTP----PKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTA 129 (998)
T ss_pred eeeeecCCCceeEeeccCCCCceeEEEeecC----CCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccC
Confidence 3344445799999766666555556666654 45577999999999999999987443 5555544 3446889999
Q ss_pred ceeEEEEEEcc-CCCHHHHHHHHHHhhhCCCCCHHHHHHH------------------HHHHHHHhhhhcCChHHHHHHH
Q 013782 154 REQMGYSFDAL-KTYVPEMVELLVDCVRNPVFLDWEVNEE------------------LRKLKSELGELHNNPQGLLLEA 214 (436)
Q Consensus 154 ~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~f~~~~~~~~------------------~~~~~~e~~~~~~~p~~~~~~~ 214 (436)
.|.+.|-+.+. ++++..+.++..|....|..-..+|.++ +..+..|++..-.+|+..+...
T Consensus 130 pD~T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~ 209 (998)
T KOG2019|consen 130 PDYTFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGML 209 (998)
T ss_pred CCcceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHH
Confidence 99999988665 5889999999999999999888888775 5667788888888999999999
Q ss_pred HHHHhc-CCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCCC-C-
Q 013782 215 IHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK-S- 290 (436)
Q Consensus 215 l~~~~~-~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~~-~- 290 (436)
+.+++| .+.||...-|.+-+|..++.+++.+||++||+|+|..+...| +..+++.++++.-|....+........ .
T Consensus 210 ~Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk 289 (998)
T KOG2019|consen 210 FQQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQK 289 (998)
T ss_pred HHHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCcccccc
Confidence 999999 999999999999999999999999999999999999999999 999999999987766554333222211 1
Q ss_pred CcC-CCeeE-------EecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcC
Q 013782 291 VYI-GGDYR-------QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQ 362 (436)
Q Consensus 291 ~~~-~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~ 362 (436)
.+. +.++. ...+..++.+.+.|..+.. .+--+..++.||..+|-+|.+ |++|+.|.|- |
T Consensus 290 ~f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~p-~d~~etfaL~~L~~Ll~~gps-----------Sp~yk~LiES-G 356 (998)
T KOG2019|consen 290 LFDKPRRVVEKGPADPGDLPKKQTKCSNSFLSNDP-LDTYETFALKVLSHLLLDGPS-----------SPFYKALIES-G 356 (998)
T ss_pred ccccCceeeeecCCCCCCCccceeEEEEEeecCCc-hhHHHHHHHHHHHHHhcCCCc-----------cHHHHHHHHc-C
Confidence 111 11111 1222567888888888764 466789999999999998776 9999999985 5
Q ss_pred Ce--EEEEeeecccCCCceEEEEEEeC-cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 013782 363 QI--QSFSAFNSIFNNTGLFGIYACTG-SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM 429 (436)
Q Consensus 363 ~~--Ys~~a~~~~~~~~~~f~i~~~~~-p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~ 429 (436)
++ .++.+++..+.-.+.|+|-.+.- .+++.++.+.+...+.+++..| ++.+.++...+++.-++..
T Consensus 357 LGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~g-fd~drieAil~qiEislk~ 425 (998)
T KOG2019|consen 357 LGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETG-FDNDRIEAILHQIEISLKH 425 (998)
T ss_pred CCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHhhhhhhc
Confidence 54 66677777777778999888754 5678889999999999999988 9999999888887665543
No 16
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.4e-17 Score=162.60 Aligned_cols=334 Identities=13% Similarity=0.103 Sum_probs=248.2
Q ss_pred CCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHc-CCeeeEeeCceeEEEE
Q 013782 82 ENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAI-GGSILASASREQMGYS 160 (436)
Q Consensus 82 ~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~-g~~~~~~~~~~~~~~~ 160 (436)
.-|++|++-.++++.+.=.+.+... -....|+.|-+||+.|+|+++++...+...+... -++.|+.++.|++.|+
T Consensus 27 ~Tkl~va~~~~pts~vhG~f~v~TE----a~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~Yt 102 (1022)
T KOG0961|consen 27 NTKLRVAIGEVPTSMVHGAFSVVTE----ADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYT 102 (1022)
T ss_pred ccceEEEEeecCCcceeeeEEeeee----ecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEE
Confidence 3588999877777766555555433 3346799999999999999999988776666553 4579999999999999
Q ss_pred EEccC-CCHHHHHHHHHHhhhCCCCCHHHHHHHH----------HHHHHHhhhhcCChHHHHHHHHHHHhc--CCCCCCC
Q 013782 161 FDALK-TYVPEMVELLVDCVRNPVFLDWEVNEEL----------RKLKSELGELHNNPQGLLLEAIHSTGY--AGALGNP 227 (436)
Q Consensus 161 ~~~~~-~~l~~~l~ll~~~~~~p~f~~~~~~~~~----------~~~~~e~~~~~~~p~~~~~~~l~~~~~--~~~~~~~ 227 (436)
.++.- +.+-.+|....|.+..|.+++++|-.+. ..+..|++..+..-+....+......| .++|...
T Consensus 103 LStag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~e 182 (1022)
T KOG0961|consen 103 LSTAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVE 182 (1022)
T ss_pred eecccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceec
Confidence 98765 6799999999999999999999997764 455666666666666777778888888 6788888
Q ss_pred CCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC--CC-C------CcC---C
Q 013782 228 LLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--PK-S------VYI---G 294 (436)
Q Consensus 228 ~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~--~~-~------~~~---~ 294 (436)
..|.++.|+.++.+.+++||+++|.++||+++++| |+++++....+..-..++......+ .+ | .+. .
T Consensus 183 TGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~ 262 (1022)
T KOG0961|consen 183 TGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKES 262 (1022)
T ss_pred cCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCcc
Confidence 88899999999999999999999999999999999 9999999988876655543221111 11 1 111 1
Q ss_pred CeeEEe---cCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHh-hcCCeEEEEee
Q 013782 295 GDYRQQ---ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLN-EYQQIQSFSAF 370 (436)
Q Consensus 295 ~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe-~~~~~Ys~~a~ 370 (436)
...++. .|..+-.+.++|.+++. .+.....++.||..+|....- +.+-+.+.| +..++-++++.
T Consensus 263 t~~tVefp~~Des~G~v~~aW~g~s~-sD~~t~~a~~vL~dyls~sav-----------apf~~~fVeieDP~assv~f~ 330 (1022)
T KOG0961|consen 263 TVHTVEFPTDDESRGAVEVAWFGHSP-SDLETHSALHVLFDYLSNSAV-----------APFQKDFVEIEDPLASSVSFH 330 (1022)
T ss_pred ceeeeecCCcccccceEEEEEcCCCH-HHhhhHHHHHHHHHHhccccc-----------cccccceEEecCccccceeee
Confidence 112222 33567888899999873 355678899999999986432 555555554 34666666655
Q ss_pred ecccCCCceEEEEE-EeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCCC
Q 013782 371 NSIFNNTGLFGIYA-CTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRK 435 (436)
Q Consensus 371 ~~~~~~~~~f~i~~-~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~~ 435 (436)
....-.+ .+.+.+ ..+.+++++....+++.+.+-++ ++-+.+.....+.+-+++.|+|..+
T Consensus 331 ~~~~vrc-~i~L~f~gVP~EKi~~~~~k~l~~l~et~~---iDm~Rm~~~i~~t~~~yL~nlE~n~ 392 (1022)
T KOG0961|consen 331 IAEGVRC-DIRLNFAGVPVEKIDECAPKFLDKLVETAN---IDMERMGYLIDQTILNYLVNLETNA 392 (1022)
T ss_pred eecccce-eEEEeecCCcHHHhhhhhHHHHHHHHHhcc---cCHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4433233 333444 45668888888888887766553 8888888888899999999998753
No 17
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.2e-15 Score=156.52 Aligned_cols=327 Identities=14% Similarity=0.111 Sum_probs=258.6
Q ss_pred EEEEcCCCcEEEE-eeCC--CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeC
Q 013782 77 KVTTLENGIRIAS-ETSV--SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS 153 (436)
Q Consensus 77 ~~~~L~NGl~v~~-~~~~--~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 153 (436)
+...-....++|. ++.. -|++.+.+.+.+.-+...+...+++.++..++ .....+..+.+...|..++.+.+
T Consensus 511 ~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l-----~d~l~E~~Y~A~~aGl~~~~~~s 585 (974)
T KOG0959|consen 511 VLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLL-----KDQLNEYLYPALLAGLTYSLSSS 585 (974)
T ss_pred eeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHHH-----HHHHhHHHHHHHhccceEEeeec
Confidence 4444456778885 4433 47999999999999999999999999999988 34455667778889999999999
Q ss_pred ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhh-hcCChHHHHHHHHHHHhcCCCCCCCCCCCh
Q 013782 154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGE-LHNNPQGLLLEAIHSTGYAGALGNPLLAPE 232 (436)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~-~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 232 (436)
..+..+++.+..++++.+++.+.+.+.+-.+++..|+..++.+..++++ ...+|...+.+.++..+-..-+ +.....
T Consensus 586 ~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W--~~~e~~ 663 (974)
T KOG0959|consen 586 SKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIW--SKEELL 663 (974)
T ss_pred CCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcccc--chHHHH
Confidence 9999999999999999999999999999999999999999999999997 6788888888877776543333 333356
Q ss_pred hhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC-C----------CCC-cCCCeeEE
Q 013782 233 SALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE-P----------KSV-YIGGDYRQ 299 (436)
Q Consensus 233 ~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~-~----------~~~-~~~~~~~~ 299 (436)
+.++.++.+++..|...++++.-+.+.+.| ++.+++.++++.....+ +.+.+.. + ... ..|.....
T Consensus 664 ~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~ 742 (974)
T KOG0959|consen 664 EALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRREIQLPNGDYYFY 742 (974)
T ss_pred HHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCcccceeccCCceEEE
Confidence 788999999999999999999999999999 99999999876665555 2211111 1 011 22333222
Q ss_pred e----cCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccC
Q 013782 300 Q----ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFN 375 (436)
Q Consensus 300 ~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~ 375 (436)
. ...+.+-+...+++.. .+..+...+.++.+++. .++|..||++.+++|.+++......
T Consensus 743 ~~~~n~~~~ns~i~~~~Q~~~--~~~~~~~~~~L~~~li~---------------ep~Fd~LRTkeqLGYiv~~~~r~~~ 805 (974)
T KOG0959|consen 743 RHLLNKTDDNSCIEVYYQIGV--QDTRDNAVLGLLEQLIK---------------EPAFDQLRTKEQLGYIVSTGVRLNY 805 (974)
T ss_pred EcccccCCCCceEEEEEEccc--chhHHHHHHHHHHHHhc---------------cchHHhhhhHHhhCeEeeeeeeeec
Confidence 1 2255677777777643 57889999999999998 8899999999999999998877555
Q ss_pred CCceEEEEEEe--CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh
Q 013782 376 NTGLFGIYACT--GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN 430 (436)
Q Consensus 376 ~~~~f~i~~~~--~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~ 430 (436)
+.-.+.|.+++ +++.+.+.++.+++.+.+... ++++++++.-+..++..++..
T Consensus 806 G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~--~m~~e~Fe~~~~~lI~~~~ek 860 (974)
T KOG0959|consen 806 GTVGLQITVQSEKSVDYLEERIESFLETFLEEIV--EMSDEEFEKHKSGLIASKLEK 860 (974)
T ss_pred CcceeEEEEccCCCchHHHHHHHHHHHHHHHHHH--hcchhhhhhhHHHHHHHHhhc
Confidence 55555555554 477899999999999988887 599999999999998887653
No 18
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=157.71 Aligned_cols=330 Identities=21% Similarity=0.211 Sum_probs=225.0
Q ss_pred EEEcCCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeC---
Q 013782 78 VTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS--- 153 (436)
Q Consensus 78 ~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~--- 153 (436)
...-.|..+|.+.+.. +..+++.++++.+..... ..+.+.-+...+...||.+++..++..+++...|.+++..+
T Consensus 529 ~~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~l~~~-llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~~~~~ 607 (978)
T COG1026 529 ETEVSNEAKVLHHDLFTNGITYLRLYFDLDMLPSE-LLPYLPLFAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDT 607 (978)
T ss_pred eeeccCCcceEEeecCCCCeEEEEEEeecCCCChh-hhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCceeeEeecc
Confidence 3445678888866655 569999999999544433 33444444444455799999999999999998776665543
Q ss_pred --------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHHhhhhc-CChHHHHHHHHHHHhc-CC
Q 013782 154 --------REQMGYSFDALKTYVPEMVELLVDCVRNPVF-LDWEVNEELRKLKSELGELH-NNPQGLLLEAIHSTGY-AG 222 (436)
Q Consensus 154 --------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f-~~~~~~~~~~~~~~e~~~~~-~~p~~~~~~~l~~~~~-~~ 222 (436)
+..+.++++++.++.+.+++++.+++.++.| |.+.+....++.+..+.... +.+...+........+ ..
T Consensus 608 ~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~ 687 (978)
T COG1026 608 DPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAG 687 (978)
T ss_pred CCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccch
Confidence 3578899999999999999999999999999 66677777777777777544 4466666666555555 33
Q ss_pred CCCCCCCC--ChhhhcCCC-----------HHHHHHHhhhccCCCCeEEEEeCCCHHHHHHHHhhhcCCCCC-----CCC
Q 013782 223 ALGNPLLA--PESALNRLD-----------GTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPR-----LPP 284 (436)
Q Consensus 223 ~~~~~~~~--~~~~l~~l~-----------~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~-----~~~ 284 (436)
.+.....| -.+-|..+. .+.|++.+++.+...|+-+++.| +.+++.+.+++-|.++.. ...
T Consensus 688 ~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~-~~~~~~~~~e~~l~~~~~~~~~~~~~ 766 (978)
T COG1026 688 ALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIG-DIDKILDLLENPLLKFLEHLLPGFEL 766 (978)
T ss_pred hHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEec-ChhhhHHHHHHHhhhhhcccCccccc
Confidence 33221111 112222221 35688888999999999777777 122233333333323221 111
Q ss_pred CCCCC---CCcCC-CeeEEecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhh
Q 013782 285 PTEPK---SVYIG-GDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNE 360 (436)
Q Consensus 285 ~~~~~---~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~ 360 (436)
+..+. .+..+ .......+.+.++.+++|..-...+.++|.+++.|+..+|+. ..||..||++
T Consensus 767 ~~~~~~~~~~~~~~~~~~~ii~~p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~--------------~~lw~~IR~~ 832 (978)
T COG1026 767 PTPPKNPHLDLISSLSEATIIPSPVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS--------------GYLWNKIREK 832 (978)
T ss_pred CCCCCCcchhhhccccceEEeccHHHHHHHhhhccCCCCCCccchHHHHHHHHhcc--------------chhHHHHHhh
Confidence 11111 11112 222233344555555666443222799999999999999994 8999999998
Q ss_pred cCCeEEEEeeecccCCCceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 013782 361 YQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVL 428 (436)
Q Consensus 361 ~~~~Ys~~a~~~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~ 428 (436)
|++|++++... .+.|.|.++...||+ +.+..+++.+.++.+++. ++++.|+++|+-.+++.+-
T Consensus 833 -GGAYGa~as~~--~~~G~f~f~sYRDPn-~~kt~~v~~~~v~~l~s~-~~~~~d~~~~ilg~i~~~d 895 (978)
T COG1026 833 -GGAYGASASID--ANRGVFSFASYRDPN-ILKTYKVFRKSVKDLASG-NFDERDLEEAILGIISTLD 895 (978)
T ss_pred -ccccccccccc--cCCCeEEEEecCCCc-HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcccc
Confidence 99999887654 456888888888888 678888888888888874 6999999999999887654
No 19
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.9e-15 Score=147.41 Aligned_cols=326 Identities=17% Similarity=0.116 Sum_probs=226.9
Q ss_pred EEcCCCcEEEEeeCCC-CeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeC----
Q 013782 79 TTLENGIRIASETSVS-PAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS---- 153 (436)
Q Consensus 79 ~~L~NGl~v~~~~~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~---- 153 (436)
...-||++|...+.+. ..+++++.+..++.-+. -.+.+.-+++.++-.||...+..++.+.+..+.|.++++..
T Consensus 564 v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~e-L~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~ 642 (998)
T KOG2019|consen 564 VGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEE-LLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVSSD 642 (998)
T ss_pred eeeccCceeEEeeccCCceEEEEEeeccccCcHH-hhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceeccC
Confidence 3445899999877775 49999999999996654 24556777888888899999999999999999887777642
Q ss_pred ------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCC
Q 013782 154 ------REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWE-VNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGN 226 (436)
Q Consensus 154 ------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~ 226 (436)
...+.+...++..+++++++++..++.++.|.+++ |+.......+++.+.-.+.-..+...-..+++ ++-|.
T Consensus 643 ~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l-~~ag~ 721 (998)
T KOG2019|consen 643 DGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAML-TPAGW 721 (998)
T ss_pred CCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhccc-Ccccc
Confidence 12467788888999999999999999999997643 66655555555554332222222222222222 11111
Q ss_pred --CCCCChhhhcCCC-------------HHHHHHHhhhccCCCCeEEEEeC--CCHHHHHHHHhhhcCCCCCCCCCCC--
Q 013782 227 --PLLAPESALNRLD-------------GTILEEIVAENFTAPRMVLAASG--VDLDELLPIAEPLLSDLPRLPPPTE-- 287 (436)
Q Consensus 227 --~~~~~~~~l~~l~-------------~~~l~~f~~~~~~~~~~~l~ivG--v~~~~l~~~~~~~~~~lp~~~~~~~-- 287 (436)
..++-.+.++-++ .+.|.++.+.+...++|.+.+.. ..+..+.+.+++++..+|...+...
T Consensus 722 i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~s 801 (998)
T KOG2019|consen 722 ISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKS 801 (998)
T ss_pred hHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCcc
Confidence 1122222221111 24567777777788999999888 8999999999999998885322211
Q ss_pred -CCCC-cCCC-eeEEecC-CCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCC
Q 013782 288 -PKSV-YIGG-DYRQQAD-SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQ 363 (436)
Q Consensus 288 -~~~~-~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~ 363 (436)
+.+. ..+. ..++..+ .+..++.-+..+.+ +++++-..+.|++.+|.. .+|+.+|||+ |+
T Consensus 802 t~d~r~p~~~~~i~~~~P~fqvnyvgka~~~vp--yt~~d~asl~vlS~~lt~--------------k~Lh~evRek-GG 864 (998)
T KOG2019|consen 802 TWDARLPLRSEAIRVVIPTFQVNYVGKAGLGVP--YTHPDGASLQVLSKLLTN--------------KWLHDEVREK-GG 864 (998)
T ss_pred CccccCCCCceeEEEeccccchhhhhhhccccc--CCCCCCcHHHHHHHHHHH--------------HHHHHHHHHh-cC
Confidence 1111 1122 2333444 34555555555655 899999999999999985 9999999998 88
Q ss_pred eEEEEeeecccCCCceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 013782 364 IQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAV 427 (436)
Q Consensus 364 ~Ys~~a~~~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l 427 (436)
+|+.+|.++.. .|.|.++...||+ ..+.++.+...-+-++. +.+++++|++||-.+++++
T Consensus 865 AYGgg~s~~sh--~GvfSf~SYRDpn-~lktL~~f~~tgd~~~~-~~~~~~dldeAkl~~f~~V 924 (998)
T KOG2019|consen 865 AYGGGCSYSSH--SGVFSFYSYRDPN-PLKTLDIFDGTGDFLRG-LDVDQQDLDEAKLGTFGDV 924 (998)
T ss_pred ccCCccccccc--cceEEEEeccCCc-hhhHHHhhcchhhhhhc-CCccccchhhhhhhhcccc
Confidence 99999887655 6899999888887 44666666665555554 3499999999999887654
No 20
>PTZ00432 falcilysin; Provisional
Probab=99.69 E-value=7.4e-15 Score=162.01 Aligned_cols=325 Identities=15% Similarity=0.098 Sum_probs=222.2
Q ss_pred EcCCCcEEEEeeCCCC-eEEEEEEEeccccCCCCCCCchHHHHHHhhc-ccCCCCCHHHHHHHHHHcCCeeeEee----C
Q 013782 80 TLENGIRIASETSVSP-AASIGLYLDFGSVYETPSSCGASNLLEKMAF-KSTKNRSHLRIVREVEAIGGSILASA----S 153 (436)
Q Consensus 80 ~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~-~gt~~~s~~~l~~~l~~~g~~~~~~~----~ 153 (436)
...+|++|+..+.++. .+++.++++.....+. ......|+..++. .||.++++.++...++...|++++++ +
T Consensus 664 ~~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~e--~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~ 741 (1119)
T PTZ00432 664 SDGGSVTVLVHPIESRGILYLDFAFSLDSLTVD--ELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSE 741 (1119)
T ss_pred ccCCCcceEEEecCCCCeEEEEEEecCCCCCHH--HHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEecc
Confidence 3457999997777755 9999999999875543 4456666666655 59999999999999999877776542 1
Q ss_pred ------------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHhhhhc-CChHHHHHHHHHHHh
Q 013782 154 ------------REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWE-VNEELRKLKSELGELH-NNPQGLLLEAIHSTG 219 (436)
Q Consensus 154 ------------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~~~~~~~e~~~~~-~~p~~~~~~~l~~~~ 219 (436)
...+.++++++.++++++++++.+++.++.|++.+ +....++.+..+.+.. .+....+...+.+..
T Consensus 742 ~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~ 821 (1119)
T PTZ00432 742 TNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKF 821 (1119)
T ss_pred ccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcC
Confidence 23688899999999999999999999999998765 7777777777666433 344444443322211
Q ss_pred cCCCCCCCCCC---ChhhhcCCC-----------HHHHHHHhhhccCCCCeEEEEeC-C-CHHHHHHHHhhhcCCCCCC-
Q 013782 220 YAGALGNPLLA---PESALNRLD-----------GTILEEIVAENFTAPRMVLAASG-V-DLDELLPIAEPLLSDLPRL- 282 (436)
Q Consensus 220 ~~~~~~~~~~~---~~~~l~~l~-----------~~~l~~f~~~~~~~~~~~l~ivG-v-~~~~l~~~~~~~~~~lp~~- 282 (436)
-...+...... ...-|+.+. .+.|.+++++.|+.+|+.+.++| . ..+.+.+.+..++..++..
T Consensus 822 S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~ 901 (1119)
T PTZ00432 822 SVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTF 901 (1119)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccccc
Confidence 00000000000 111111111 34588889999999999999999 4 5566767666777766421
Q ss_pred ---C--CCC-CCCC-C-----cCC--CeeEEecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCC
Q 013782 283 ---P--PPT-EPKS-V-----YIG--GDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKG 348 (436)
Q Consensus 283 ---~--~~~-~~~~-~-----~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~g 348 (436)
. ... .... . +.. ....+..+....+++.+..... ..+++.+++.|+.++|..
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~V~yv~~~~~~~~--~~~~~~~~l~Vl~~~L~~------------ 967 (1119)
T PTZ00432 902 KENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPTRVNFVGMGGKLFD--KSDKVDGSFQVIVHYLKN------------ 967 (1119)
T ss_pred ccccccccccccccccccccccCCcccceEEEccCceeEEEEeccccc--CCCccCHHHHHHHHHHcc------------
Confidence 1 010 0110 0 111 2223445566777777744333 467789999999999985
Q ss_pred cccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEeCcchHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHH
Q 013782 349 MHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIAT--PKQVTQVQLNRAKEATKSA 426 (436)
Q Consensus 349 m~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~l~~--~g~~~~~el~~aK~~l~~~ 426 (436)
..||+.||++ |++|++++... ..|.|.++...||. +.+.++.+.+..+.+.+ . .+|+++|+++|-.+++.
T Consensus 968 --~yLw~~IR~~-GGAYG~~~~~~---~~G~~~f~SYRDPn-~~~Tl~~f~~~~~~l~~~~~-~~~~~~l~~~iig~~~~ 1039 (1119)
T PTZ00432 968 --SYLWKTVRMS-LGAYGVFADLL---YTGHVIFMSYADPN-FEKTLEVYKEVASALREAAE-TLTDKDLLRYKIGKISN 1039 (1119)
T ss_pred --ccchHHHccc-CCccccCCccC---CCCeEEEEEecCCC-HHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhc
Confidence 8999999998 88999986553 25888888888887 55777777776666655 3 39999999999998887
Q ss_pred HH
Q 013782 427 VL 428 (436)
Q Consensus 427 l~ 428 (436)
+-
T Consensus 1040 ~D 1041 (1119)
T PTZ00432 1040 ID 1041 (1119)
T ss_pred cC
Confidence 64
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-06 Score=87.67 Aligned_cols=326 Identities=15% Similarity=0.138 Sum_probs=202.5
Q ss_pred EeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcc------cCCC----CCHHHHHHHHHHcCCeeeEe-----eC
Q 013782 89 SETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK------STKN----RSHLRIVREVEAIGGSILAS-----AS 153 (436)
Q Consensus 89 ~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~------gt~~----~s~~~l~~~l~~~g~~~~~~-----~~ 153 (436)
...-+...+.+..+++.-+.. ........+...+++. |+-+ .+..++.+.+....+..+.. .-
T Consensus 555 l~h~ps~Fvel~fl~dss~i~--~sl~pYl~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~~G~~ 632 (1022)
T KOG0961|consen 555 LHHCPSKFVELFFLLDSSNIS--ISLRPYLFLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLY 632 (1022)
T ss_pred cccCchHHHhHhhhhccccCc--hhhhhHHHHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhhhhhcccccccc
Confidence 334444566666666666554 2233444455555443 5544 34555655555433322222 33
Q ss_pred ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCC--CC
Q 013782 154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPL--LA 230 (436)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~--~~ 230 (436)
++-..+.+++..++.+..+..+..++..-.||++.+....+++..++...+.|....+..+....+| .+.+.... +-
T Consensus 633 ~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~L~ 712 (1022)
T KOG0961|consen 633 DRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDELV 712 (1022)
T ss_pred hhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999 55543322 11
Q ss_pred ChhhhcCCC----------HHHHHHHhhhccCCCCeEEEEeC-CCH-HHHHHHHhhhcCCCCCCCCCC---------CCC
Q 013782 231 PESALNRLD----------GTILEEIVAENFTAPRMVLAASG-VDL-DELLPIAEPLLSDLPRLPPPT---------EPK 289 (436)
Q Consensus 231 ~~~~l~~l~----------~~~l~~f~~~~~~~~~~~l~ivG-v~~-~~l~~~~~~~~~~lp~~~~~~---------~~~ 289 (436)
.++-++.|. .+.++...+-....+.+.+.++| ++. +....-...++.+..-..+.. ...
T Consensus 713 ~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~~~~~nP~~~f~~tf~~~~~~ 792 (1022)
T KOG0961|consen 713 LEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQADPRFGNPGHQFSATFEAGENV 792 (1022)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcCcccCCchhhcccccccCccc
Confidence 122223332 12233332212245778888999 542 211111112222110000000 011
Q ss_pred CCcCC-C--eeEEecC-CCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeE
Q 013782 290 SVYIG-G--DYRQQAD-SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQ 365 (436)
Q Consensus 290 ~~~~~-~--~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Y 365 (436)
+.-.| + ...+..+ +..+.+...-+...-| .+++.+...++.++|+- |..++|+.||-. |++|
T Consensus 793 s~e~gsssk~~~I~~p~sESs~l~~sip~~~~w-~dpel~~~~l~~~YL~~------------~eGPfW~~IRG~-GLAY 858 (1022)
T KOG0961|consen 793 SLELGSSSKELLIGVPGSESSFLYQSIPLDANW-NDPELIPAMLFGQYLSQ------------CEGPFWRAIRGD-GLAY 858 (1022)
T ss_pred ceeccCCcceeEecCCCccccceeeeccccccc-CCcchhHHHHHHHHHHh------------cccchhhhhccc-chhc
Confidence 11111 2 2223333 4445444444444345 78899999999999986 568999999987 9999
Q ss_pred EEEeeecccCCCceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 013782 366 SFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLES 433 (436)
Q Consensus 366 s~~a~~~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les 433 (436)
++.-+..+..+...|.||.+.+|.++-+.-..+.+.+..= .+++++.+|+-||...+..+ +.+|+
T Consensus 859 Ganm~~~~d~~~~~~~iyr~ad~~kaye~~rdiV~~~vsG--~~e~s~~~~egAk~s~~~~~-~~~En 923 (1022)
T KOG0961|consen 859 GANMFVKPDRKQITLSIYRCADPAKAYERTRDIVRKIVSG--SGEISKAEFEGAKRSTVFEM-MKREN 923 (1022)
T ss_pred cceeEEeccCCEEEEEeecCCcHHHHHHHHHHHHHHHhcC--ceeecHHHhccchHHHHHHH-HHHhc
Confidence 9988877766777788888888876666666555544331 34699999999999887765 34443
No 22
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=98.50 E-value=2.4e-06 Score=79.48 Aligned_cols=114 Identities=25% Similarity=0.248 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhc-ccCCCCCHHHHHHHHHHcCCeee
Q 013782 72 EPGKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAF-KSTKNRSHLRIVREVEAIGGSIL 149 (436)
Q Consensus 72 ~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~-~gt~~~s~~~l~~~l~~~g~~~~ 149 (436)
+...++...+ +|++|+..+.+ +..+++.++|+.+...+. ..-...|+..++. -||+++++.++...+..+.|+++
T Consensus 67 ~~~~~~~~~~-~~~~v~~~~~~TnGI~Y~~l~fdl~~l~~e--~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis 143 (248)
T PF08367_consen 67 EKIPLEVEKL-GGIPVLFHEQPTNGIVYVRLYFDLSDLPEE--DLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGIS 143 (248)
T ss_dssp -----EECCC-TTCEEEEEE---TTEEEEEEEEE-TTS-CC--CHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEE
T ss_pred CCCCceeeec-CCccEEEEEcCCCCeEEEEEEecCCCCCHH--HHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeE
Confidence 3334444433 68999976666 559999999999865543 4556666667765 49999999999999999988877
Q ss_pred EeeC-----------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH
Q 013782 150 ASAS-----------REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWE 188 (436)
Q Consensus 150 ~~~~-----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~ 188 (436)
+++. .-.+.++++++.++++++++++.+++.+++|++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~ 193 (248)
T PF08367_consen 144 FSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKE 193 (248)
T ss_dssp EEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HH
T ss_pred EEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHH
Confidence 7753 23578899999999999999999999999998754
No 23
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.10 E-value=0.00016 Score=70.25 Aligned_cols=187 Identities=19% Similarity=0.292 Sum_probs=114.6
Q ss_pred EEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeCceeEE
Q 013782 79 TTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMG 158 (436)
Q Consensus 79 ~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 158 (436)
..|+||+||...+.-...+++++. +.|.-.+-++-.|+|||+||++- .+++..+ .-||+++|.+++
T Consensus 2 IvL~NGVRiFin~~M~KDIYlGIs-~FGFe~DI~~iLGiAHLLEHILI----sFD~~~F---------~ANASTaRsYMS 67 (590)
T PF03410_consen 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI----SFDSSKF---------LANASTARSYMS 67 (590)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee----ecchHHh---------hcccchhhhhhh
Confidence 479999999998887888888875 45655565678899999999973 3444443 367899999999
Q ss_pred EEEEccCCC-HHHHHHHHHHhhhC-----CCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCCh
Q 013782 159 YSFDALKTY-VPEMVELLVDCVRN-----PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPE 232 (436)
Q Consensus 159 ~~~~~~~~~-l~~~l~ll~~~~~~-----p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 232 (436)
|-+.+.+.. --++++.+...+.. ..|+...++.....+..|.--+ |-....++.|.-.. ++.+-+ .|..
T Consensus 68 FWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYYFR--nEvfHCmDvLtfL~-gGDLYN--GGRi 142 (590)
T PF03410_consen 68 FWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYYFR--NEVFHCMDVLTFLG-GGDLYN--GGRI 142 (590)
T ss_pred hhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhhhh--hhHHHHHHHHHHhc-CCcccC--CchH
Confidence 998888755 34555555554443 3366666666555555554421 12223334333221 333222 2334
Q ss_pred hhhcCCCHHHHHHHhhhcc---CCCCeEEEEeCCCHHHHHHHHhhhcCCCCCCCCCCC
Q 013782 233 SALNRLDGTILEEIVAENF---TAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTE 287 (436)
Q Consensus 233 ~~l~~l~~~~l~~f~~~~~---~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~~~~~~~ 287 (436)
..++.+ +++.+.....+ ..+|+++.+=-.+ +.+..++++.||.+|+.|..-+
T Consensus 143 ~ML~~l--~~i~~mL~~RM~~I~GpniVIFVk~l~-~~~l~lL~~TFGtLP~cP~~Ip 197 (590)
T PF03410_consen 143 DMLNNL--NDIRNMLSNRMHRIIGPNIVIFVKELN-PNILSLLSNTFGTLPSCPLTIP 197 (590)
T ss_pred HHHhhh--HHHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCccccc
Confidence 445444 33333333332 3455555544477 5578899999999998765433
No 24
>PHA03081 putative metalloprotease; Provisional
Probab=97.86 E-value=0.00071 Score=66.05 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=114.6
Q ss_pred EEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeCceeEE
Q 013782 79 TTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMG 158 (436)
Q Consensus 79 ~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 158 (436)
.+|+||++|...+.-...+++++. +.|.-.+-.+-.|++||+||++- .+++..+ ..|+++.|.++.
T Consensus 2 i~~~ngvr~f~~~~m~kdiy~gi~-~fgfe~di~~~lg~ahllehili----~fd~~~f---------~anast~r~yms 67 (595)
T PHA03081 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI----SFDSSKF---------VANASTARSYMS 67 (595)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee----ecchHHh---------cccchhhhhhHh
Confidence 478999999988877778888765 45555555678899999999973 3444333 357888899999
Q ss_pred EEEEccCCC-HHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCCh
Q 013782 159 YSFDALKTY-VPEMVELLVDCVRNPV-----FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPE 232 (436)
Q Consensus 159 ~~~~~~~~~-l~~~l~ll~~~~~~p~-----f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 232 (436)
|-+.+.+.. -.++++.+...+..+. |+...++.....+..|.--+ |-....++.|.-.. ++.+-+ .|..
T Consensus 68 fwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYYFR--nEvfHCmDvLTfL~-gGDLYN--GGRi 142 (595)
T PHA03081 68 FWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYYFR--NEVFHCMDVLTFLG-GGDLYN--GGRI 142 (595)
T ss_pred HhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhhhh--hhhHHHHHHHHHhc-CCcccC--CchH
Confidence 988777644 3677777777777655 44444554444444443311 22223344433221 333222 2344
Q ss_pred hhhcCCCHHHHHHHhhhcc---CCCCeEEEEeCCCHHHHHHHHhhhcCCCCCCCCCC
Q 013782 233 SALNRLDGTILEEIVAENF---TAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPT 286 (436)
Q Consensus 233 ~~l~~l~~~~l~~f~~~~~---~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~~~~~~ 286 (436)
+.|+.+ +++++...+.+ ..+|+++.+=-.+ +....++++.||.+|.-|...
T Consensus 143 ~ML~~l--~~i~~~L~~RM~~I~GpniVIFVk~ln-~~~l~lL~~TFGtLP~~P~~I 196 (595)
T PHA03081 143 DMLDNL--NDVRDMLSNRMHRISGPNIVIFVKELN-PNTLSLLNNTFGTLPSCPETI 196 (595)
T ss_pred HHHhhh--HHHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcccc
Confidence 555444 34444444333 3455555544477 457889999999999876443
No 25
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.17 Score=48.92 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=112.8
Q ss_pred CcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhc-----ccCCCCCHHHHHHHHHHcC-C----eee-Eee
Q 013782 84 GIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAF-----KSTKNRSHLRIVREVEAIG-G----SIL-ASA 152 (436)
Q Consensus 84 Gl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~-----~gt~~~s~~~l~~~l~~~g-~----~~~-~~~ 152 (436)
|-.|-..+.+-|.+.+.+.+.+-+...++. -.+.+...++. .|++......|.+.+.... + ++| +|.
T Consensus 258 gsEvR~rdd~lP~a~~AiAVEG~~w~~pD~--~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~Yk 335 (467)
T KOG0960|consen 258 GSEVRVRDDDLPLAHIAIAVEGVSWAHPDY--FALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTSYK 335 (467)
T ss_pred CceeeecCCCCchhheeeeEecCCcCCccH--HHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhcccc
Confidence 666777788889999999999888777742 23333333332 3666555556655554321 1 111 122
Q ss_pred CceeEEEEEEc-cCCCHHHHHHHH-HHhhhC-CCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 013782 153 SREQMGYSFDA-LKTYVPEMVELL-VDCVRN-PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPL 228 (436)
Q Consensus 153 ~~~~~~~~~~~-~~~~l~~~l~ll-~~~~~~-p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 228 (436)
+..-.++++-+ ....+++++..+ .+...- ...++.|++++|..++..+-...+.-...+.+.-.+.++ +.- .|+
T Consensus 336 DTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grr--i~l 413 (467)
T KOG0960|consen 336 DTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRR--IPL 413 (467)
T ss_pred cccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCc--CCh
Confidence 22233444555 455666666544 232222 278999999999999999886554444456666666666 322 122
Q ss_pred CCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CC
Q 013782 229 LAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VD 264 (436)
Q Consensus 229 ~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~ 264 (436)
---...|++|+.++++++..+++--..+.++.+| +.
T Consensus 414 ~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 414 AELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 1234679999999999999999988889999999 53
No 26
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=95.68 E-value=0.066 Score=56.93 Aligned_cols=82 Identities=11% Similarity=0.025 Sum_probs=65.1
Q ss_pred cCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceE
Q 013782 301 ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLF 380 (436)
Q Consensus 301 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f 380 (436)
.+...+.+.+..+.|. .+..+.+++++|.+++. .++|++||-+.+++|.|+|.+....+...+
T Consensus 611 ~~~~e~alllf~p~~~--~~~~~~aa~rlla~l~~---------------~~f~qrlRve~qlGY~v~~~~~~~~~~~gl 673 (696)
T TIGR02110 611 CDGGEQALLLFCPLPT--ADVASEAAWRLLAQLLE---------------PPFFQRLRVELQLGYVVFCRYRRVADRDGL 673 (696)
T ss_pred CCCCCcEEEEEecCCC--CCHHHHHHHHHHHHHhc---------------hhHHHHHHHhhccceEEEEeeEEcCCccee
Confidence 3455666667778876 67788999999999999 899999999999999999999988876666
Q ss_pred EEEEEeCcchHHHHHHHHH
Q 013782 381 GIYACTGSDFVSKAVDLVV 399 (436)
Q Consensus 381 ~i~~~~~p~~~~~~~~~~~ 399 (436)
.+-++++.-...++++-+.
T Consensus 674 lf~~QSP~~~~~~l~~h~~ 692 (696)
T TIGR02110 674 LFALQSPDASARELLQHIK 692 (696)
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6777777655555555443
No 27
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=94.88 E-value=0.99 Score=38.00 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=75.6
Q ss_pred CCCceEEEEEeecCCCCCCCc--chHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCce
Q 013782 302 DSPETHIALAFEVPGGWLKDK--EAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGL 379 (436)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~~--~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~ 379 (436)
+.+.+.+.+.|.+.. ..++ ......++..++..|. +++.+.=+.+..++.|..+++.+.. -.
T Consensus 9 ~~~~~~~~l~~~~Gs--~~e~~~~~G~a~ll~~l~~~gs--------~~~~~~~l~~~l~~~G~~~~~~t~~------d~ 72 (149)
T PF00675_consen 9 GSPVVSVSLVFKAGS--RYEPPGKPGLAHLLEHLLFRGS--------KKYSSDELQEELESLGASFNASTSR------DS 72 (149)
T ss_dssp TSSEEEEEEEES-SG--GGSCTTTTTHHHHHHHHTTSBB--------SSSBHHHHHHHHHHTTCEEEEEEES------SE
T ss_pred CCCEEEEEEEEeecc--CCCCCCCCchhhhhhhhccccc--------chhhhhhhHHHhhhhccccceEecc------cc
Confidence 467777888887755 3333 3477778878776542 2233444445566678777655442 35
Q ss_pred EEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 013782 380 FGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLES 433 (436)
Q Consensus 380 f~i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les 433 (436)
..+++.+.+++..++++.+.+.+..- .++++++++.|..++.++....++
T Consensus 73 t~~~~~~~~~~~~~~l~~l~~~~~~P----~f~~~~~~~~r~~~~~ei~~~~~~ 122 (149)
T PF00675_consen 73 TSYSASVLSEDLEKALELLADMLFNP----SFDEEEFEREREQILQEIEEIKEN 122 (149)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHSB----GGCHHHHHHHHHHHHHHHHHHTTH
T ss_pred eEEEEEEecccchhHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHCC
Confidence 66778888888888888777665442 399999999999999988876554
No 28
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=94.17 E-value=1.7 Score=43.90 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-
Q 013782 184 FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG- 262 (436)
Q Consensus 184 f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG- 262 (436)
+++++++..+..+...+-...++|...+........+..+.. ....-.+.|+.++.+++.++.++++.+++++++++|
T Consensus 352 ~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p 430 (438)
T COG0612 352 FTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLI-TLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGP 430 (438)
T ss_pred CCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcc
Confidence 889999999999998888888899887777766666522221 122345889999999999999999999999999999
Q ss_pred CCH
Q 013782 263 VDL 265 (436)
Q Consensus 263 v~~ 265 (436)
...
T Consensus 431 ~~~ 433 (438)
T COG0612 431 EKA 433 (438)
T ss_pred ccc
Confidence 543
No 29
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.72 Score=44.76 Aligned_cols=162 Identities=15% Similarity=0.034 Sum_probs=100.6
Q ss_pred eEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCC--------HHHH-H------HHHHHcCCeeeEeeCceeEEEE
Q 013782 96 AASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS--------HLRI-V------REVEAIGGSILASASREQMGYS 160 (436)
Q Consensus 96 ~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s--------~~~l-~------~~l~~~g~~~~~~~~~~~~~~~ 160 (436)
...|.+-+.+-+..++ ..-..-.+.-|+. |.+.+| +.++ . .+++...+.-+.+.+..-++++
T Consensus 264 ltHv~lg~Eg~~~~de--D~v~~avLq~lmG-GGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi~ 340 (472)
T KOG2067|consen 264 LTHVVLGFEGCSWNDE--DFVALAVLQMLMG-GGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIY 340 (472)
T ss_pred eeeeeEeeccCCCCCh--hHHHHHHHHHHhc-CCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEEe
Confidence 5566666666665555 3333444444442 222222 2221 1 1334444445555666678899
Q ss_pred EEccCCCHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCC
Q 013782 161 FDALKTYVPEMVELLVDCVRN--PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRL 238 (436)
Q Consensus 161 ~~~~~~~l~~~l~ll~~~~~~--p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 238 (436)
++++++...++++++..-+.+ -..++++++++|.+++..+-....+-.-.+.|.-.+++-.+.+ .+..--.+.|+++
T Consensus 341 ~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~r-k~p~e~~~~Ie~l 419 (472)
T KOG2067|consen 341 ASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGER-KPPDEFIKKIEQL 419 (472)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCc-CCHHHHHHHHHhc
Confidence 999999999999999765544 4489999999999999988854433333555666666542111 1111223678999
Q ss_pred CHHHHHHHhhhccCCCCeEEEEeC
Q 013782 239 DGTILEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 239 ~~~~l~~f~~~~~~~~~~~l~ivG 262 (436)
+.+|+.++-.+.++. +.++...|
T Consensus 420 t~~DI~rva~kvlt~-~p~va~~G 442 (472)
T KOG2067|consen 420 TPSDISRVASKVLTG-KPSVAAFG 442 (472)
T ss_pred CHHHHHHHHHHHhcC-CceeccCC
Confidence 999999999888753 44555555
No 30
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=87.40 E-value=0.85 Score=27.28 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=22.3
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 013782 398 VVRELILIATPKQVTQVQLNRAKEATK 424 (436)
Q Consensus 398 ~~~~l~~l~~~g~~~~~el~~aK~~l~ 424 (436)
-++.|..+...|.+|++|+++.|+.++
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 345677777888999999999999875
No 31
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=84.40 E-value=3.1 Score=35.58 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=64.3
Q ss_pred CcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHH-HcCC--eeeEeeC--c--ee
Q 013782 84 GIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVE-AIGG--SILASAS--R--EQ 156 (436)
Q Consensus 84 Gl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~--~~~~~~~--~--~~ 156 (436)
+..+.....+.+...+.+.+.+...... .......++..++..+ ....+...+. ..+. .++++.. + ..
T Consensus 67 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~l~~~l~~~----~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~ 141 (184)
T PF05193_consen 67 GKEIVIPSKDESQSIVSIAFPGPPIKDS-KDYFALNLLSSLLGNG----MSSRLFQELREKQGLAYSVSASNSSYRDSGL 141 (184)
T ss_dssp EEEEEEEESSSSSEEEEEEEEEEETGTS-TTHHHHHHHHHHHHCS----TTSHHHHHHHTTTTSESEEEEEEEEESSEEE
T ss_pred cccccccccccccccccccccccccccc-chhhHHHHHHHHHhcC----ccchhHHHHHhccccceEEEeeeeccccceE
Confidence 3444555545466666677766665222 3556777888887544 3334555555 4443 3333322 2 34
Q ss_pred EEEEEEccCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 013782 157 MGYSFDALKTYVPEMVELLVDCVRN---PVFLDWEVNEELRKL 196 (436)
Q Consensus 157 ~~~~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~~~~~ 196 (436)
+.+.+.+.+++++++++.+.+.+.. -.|++++|+++|+.+
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 142 FSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 6667777777888877777554443 349999999998764
No 32
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=58.81 E-value=1.5e+02 Score=27.29 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=72.3
Q ss_pred CCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEe--eecc---cCCC
Q 013782 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSA--FNSI---FNNT 377 (436)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a--~~~~---~~~~ 377 (436)
..-+++-+.|..+. .+.++..-+.++..+|+.-|. ... -+..|-..+....| +-+++. .... ....
T Consensus 89 nGI~Y~~l~fdl~~--l~~e~l~yl~Ll~~ll~~lgT-----~~~-sy~el~~~i~~~tG-Gis~~~~~~~~~~~~~~~~ 159 (248)
T PF08367_consen 89 NGIVYVRLYFDLSD--LPEEDLPYLPLLTDLLGELGT-----KNY-SYEELSNEIDLYTG-GISFSIEVYTDYDDDDKYR 159 (248)
T ss_dssp TTEEEEEEEEE-TT--S-CCCHCCHHHHHHHCCCS-B-----SSS--HHHHHHHHHHHSS-EEEEEEEEEEEECTECCCE
T ss_pred CCeEEEEEEecCCC--CCHHHHHhHHHHHHHHHhCCC-----CCC-CHHHHHHHHHHhCC-CeEEEeeeccCCCCcccee
Confidence 67889999999987 788899999999999996432 111 23445445555544 333333 2222 1124
Q ss_pred ceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHHHHHhc
Q 013782 378 GLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQV-QLNRAKEATKSAVLMNL 431 (436)
Q Consensus 378 ~~f~i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~-el~~aK~~l~~~l~~~l 431 (436)
..|.+.+.|=.+++.++++.+.+.+.+. .+++. .|.....+.++.+..++
T Consensus 160 ~~l~is~k~L~~~~~~~~~ll~eil~~~----~f~d~~rl~~ll~~~~s~~~~~i 210 (248)
T PF08367_consen 160 PYLVISAKCLDEKLDEAFELLSEILTET----DFDDKERLKELLKELKSDMESSI 210 (248)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHHCB-----TT-HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeHhhhHHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHHHHHhh
Confidence 5688888888999999999887777553 36655 45555566665555443
No 33
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=32.08 E-value=52 Score=28.47 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=34.2
Q ss_pred hhhcCCCHHHHHHHhhhcc-CCCCeEEEEeC-CCHHHHHHHHhh
Q 013782 233 SALNRLDGTILEEIVAENF-TAPRMVLAASG-VDLDELLPIAEP 274 (436)
Q Consensus 233 ~~l~~l~~~~l~~f~~~~~-~~~~~~l~ivG-v~~~~l~~~~~~ 274 (436)
=.+++.+++++++..+..- ...++.+.++| ++.+.+.++++.
T Consensus 104 I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 104 IMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred EEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 4578889999999998654 45679999999 999999998864
No 34
>COG5023 Tubulin [Cytoskeleton]
Probab=31.43 E-value=2.5e+02 Score=27.61 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=47.0
Q ss_pred CCCCCCCcccHHHHHHHhhcC----CeEEEEeee-------cccCCCceEEEEEEeC---cch--HHHHHHHHHHHHHHh
Q 013782 342 AGGPGKGMHTRLYLRVLNEYQ----QIQSFSAFN-------SIFNNTGLFGIYACTG---SDF--VSKAVDLVVRELILI 405 (436)
Q Consensus 342 ~gg~g~gm~s~L~~~lRe~~~----~~Ys~~a~~-------~~~~~~~~f~i~~~~~---p~~--~~~~~~~~~~~l~~l 405 (436)
+||-|.||.+.|.++||++++ +.|||.-.. .+|+ ..+.++...+ .-. -.+++-.+.. +.+
T Consensus 140 gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYN--svLt~h~l~ensD~tf~~DNeal~di~~--~~L 215 (443)
T COG5023 140 GGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYN--SVLTLHRLLENSDCTFVVDNEALYDICR--RNL 215 (443)
T ss_pred cCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccH--HHHHHHHHHhcCCceEEechHHHHHHHH--Hhc
Confidence 578899999999999999986 355554311 0111 1111111100 000 0112222221 233
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhc
Q 013782 406 ATPKQVTQVQLNRAKEATKSAVLMNL 431 (436)
Q Consensus 406 ~~~g~~~~~el~~aK~~l~~~l~~~l 431 (436)
..+ .++=+++++...++.+.....+
T Consensus 216 ~i~-~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 216 RIQ-NPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred CCC-CCChHHHHHHHHHHHHhhhhee
Confidence 333 4899999999999988877654
No 35
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=28.20 E-value=2e+02 Score=21.42 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 013782 398 VVRELILIATPKQVTQVQLNRAKEATKSAVLM 429 (436)
Q Consensus 398 ~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~ 429 (436)
-+.++......|.+|++|+++....++..+..
T Consensus 36 ~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 36 ELAELQEALEAGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33344444455789999999999999888764
No 36
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=26.84 E-value=1e+02 Score=28.85 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=61.9
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-------------CCCCCCCCCCChhhhcCCCHHHHH
Q 013782 178 CVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-------------AGALGNPLLAPESALNRLDGTILE 244 (436)
Q Consensus 178 ~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-------------~~~~~~~~~~~~~~l~~l~~~~l~ 244 (436)
+.+=|.+..|.-++.++++.+-+....-+|..+..++-++..= ..|--.-..-+-.+++.|+.+.|+
T Consensus 96 Ia~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ 175 (309)
T COG1125 96 IATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175 (309)
T ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHH
Confidence 3344556566666666666666666666666555444333321 111000011122568889998888
Q ss_pred HHhhhccCCCCeEEEEeCCCHHHHHHHHhhh
Q 013782 245 EIVAENFTAPRMVLAASGVDLDELLPIAEPL 275 (436)
Q Consensus 245 ~f~~~~~~~~~~~l~ivGv~~~~l~~~~~~~ 275 (436)
+-.++.-.--+.++++|-.|.+|+.++..+.
T Consensus 176 ~e~~~lq~~l~kTivfVTHDidEA~kLadri 206 (309)
T COG1125 176 EEIKELQKELGKTIVFVTHDIDEALKLADRI 206 (309)
T ss_pred HHHHHHHHHhCCEEEEEecCHHHHHhhhceE
Confidence 8777776667899999999999999998775
No 37
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=25.42 E-value=2e+02 Score=22.42 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEeC--c-chHHHHHHHHHHHHHHhhC
Q 013782 352 RLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTG--S-DFVSKAVDLVVRELILIAT 407 (436)
Q Consensus 352 ~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~~--p-~~~~~~~~~~~~~l~~l~~ 407 (436)
.|-..|++..+--+..+.--++..+...+.|.+..+ | +.+.++...+.+.+..+.+
T Consensus 31 lL~~~L~~d~~V~~a~Y~i~HP~~~~~~i~Ikt~~~~dp~~aL~~A~~~i~~~~~~l~~ 89 (99)
T COG1761 31 LLREELLKDEDVEFAAYSIPHPLIDNPKIRIKTKGGVDPKEALKRAARKILKDLEELLD 89 (99)
T ss_pred HHHHHHhCCCCeeEEEEeCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555443322222223444444444444333 1 3344455555555555443
No 38
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.45 E-value=2.2e+02 Score=19.30 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCeeeEeeC-ceeEEEEEEccCCCHHHHHHHHHHhhhC
Q 013782 136 RIVREVEAIGGSILASAS-REQMGYSFDALKTYVPEMVELLVDCVRN 181 (436)
Q Consensus 136 ~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ll~~~~~~ 181 (436)
++...+...|.++..-.. .....+++....++.+.+++.+++.+.+
T Consensus 20 ~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 20 RATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 456667777877765432 2346778888889999999999887653
No 39
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=23.42 E-value=1.9e+02 Score=19.63 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeeeEee-CceeEEEEEEccCCCHHHHHHHHHHhhh
Q 013782 135 LRIVREVEAIGGSILASA-SREQMGYSFDALKTYVPEMVELLVDCVR 180 (436)
Q Consensus 135 ~~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ll~~~~~ 180 (436)
.++.+.+...|.++..-. +.....+++....++.+.+++.|++.+.
T Consensus 19 ~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 19 ATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 356666778888775443 1244778888888889999999988765
No 40
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=23.39 E-value=2.3e+02 Score=22.63 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcc
Q 013782 393 KAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLE 432 (436)
Q Consensus 393 ~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~le 432 (436)
..+..=+.|+++-..+|.++++|.+++|..+...++...+
T Consensus 39 ~iyr~qL~ELe~d~~~G~l~~~e~~~~~~El~rrLL~d~~ 78 (117)
T TIGR03142 39 AVYRDRLAELERDLAEGLLDEAEAEAARAELQRRLLADIP 78 (117)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHCcc
Confidence 4556666677666666779999999999999999987654
No 41
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=21.76 E-value=56 Score=31.95 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCCCCC--------CCCCCCCCcccHHHHHHHhhcC----CeEEEEee
Q 013782 326 ILTVLQVLMGGGGSF--------SAGGPGKGMHTRLYLRVLNEYQ----QIQSFSAF 370 (436)
Q Consensus 326 ~~~vl~~lLgg~~s~--------s~gg~g~gm~s~L~~~lRe~~~----~~Ys~~a~ 370 (436)
.+.++..=..|-.|| =|||-|.||.|.|.++|++++. ..|+|...
T Consensus 118 ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn 174 (448)
T KOG1374|consen 118 IMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPN 174 (448)
T ss_pred HHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccC
Confidence 344555555566666 4899999999999999999875 36666543
No 42
>COG3372 Predicted nuclease of restriction endonuclease-like fold [General function prediction only]
Probab=21.50 E-value=6.4e+02 Score=24.98 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=14.7
Q ss_pred chHHHHHHh-hcccCCCCCHHHHHHHHHHcC
Q 013782 116 GASNLLEKM-AFKSTKNRSHLRIVREVEAIG 145 (436)
Q Consensus 116 g~a~ll~~l-~~~gt~~~s~~~l~~~l~~~g 145 (436)
|++++++++ .|......++.++.+.+-..|
T Consensus 65 GlA~iler~c~fe~~s~~dp~~~R~~lFe~g 95 (396)
T COG3372 65 GLAKILERECEFEVVSALDPREVRRFLFERG 95 (396)
T ss_pred HHHHHHHhheeeeecccCChHHHHHHHHhcC
Confidence 555555554 334444445555555554444
No 43
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=21.29 E-value=2.3e+02 Score=22.47 Aligned_cols=46 Identities=4% Similarity=0.024 Sum_probs=39.9
Q ss_pred CCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCC
Q 013782 237 RLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRL 282 (436)
Q Consensus 237 ~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~ 282 (436)
+-+.+++++-++.+...+++.++++. +-.+.+...+..+-..+|..
T Consensus 44 ~Tt~~eiedaF~~f~~RdDIaIiLInq~~Ae~iR~~vD~h~~~vPAv 90 (121)
T KOG3432|consen 44 KTTVEEIEDAFKSFTARDDIAIILINQFIAEMIRDRVDAHTQAVPAV 90 (121)
T ss_pred cCCHHHHHHHHHhhccccCeEEEEEhHHHHHHHHHHHHhccccCCee
Confidence 56789999999999889999999999 98899999999887777653
No 44
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.04 E-value=1.3e+02 Score=26.63 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=30.6
Q ss_pred cCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHh
Q 013782 236 NRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAE 273 (436)
Q Consensus 236 ~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~ 273 (436)
.=|+.+++.++.+. .|.++.++++| -.++++.+.+.
T Consensus 131 gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 131 GYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCc
Confidence 45778999999975 79999999999 88888888764
No 45
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=20.25 E-value=1.7e+02 Score=21.42 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q 013782 390 FVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSA 426 (436)
Q Consensus 390 ~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~ 426 (436)
++.+++..+.+-+.+++.+-.+|.+|+..|+..+..-
T Consensus 3 R~~~i~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~ 39 (74)
T PF04444_consen 3 RLKEIMARLVRHLHDFIREVDLTEDEWWAAVDFLNRV 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4556666666666555543359999999999887643
Done!