Query 013782
Match_columns 436
No_of_seqs 233 out of 1585
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 17:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 1.6E-57 5.4E-62 463.2 42.9 358 74-434 4-372 (475)
2 3eoq_A Putative zinc protease; 100.0 1.8E-53 6.2E-58 424.6 39.6 343 76-434 2-349 (406)
3 3hdi_A Processing protease; CA 100.0 1.3E-52 4.4E-57 420.3 40.3 344 76-434 2-349 (421)
4 1hr6_B Beta-MPP, mitochondrial 100.0 8.8E-52 3E-56 416.8 41.3 357 73-434 4-372 (443)
5 1pp9_A Ubiquinol-cytochrome C 100.0 1.1E-51 3.8E-56 416.7 38.9 354 74-434 12-372 (446)
6 1pp9_B Ubiquinol-cytochrome C 100.0 9.5E-51 3.3E-55 408.5 45.0 357 71-434 19-375 (439)
7 3ami_A Zinc peptidase; alpha/b 100.0 2.9E-50 9.9E-55 406.2 38.8 349 74-434 5-366 (445)
8 3gwb_A Peptidase M16 inactive 100.0 1.8E-49 6.2E-54 398.6 36.8 348 73-434 11-365 (434)
9 3amj_B Zinc peptidase inactive 100.0 2E-48 6.8E-53 390.0 37.9 346 74-434 2-358 (424)
10 3cx5_A Cytochrome B-C1 complex 100.0 1.9E-47 6.4E-52 383.4 34.7 343 77-434 2-357 (431)
11 3d3y_A Uncharacterized protein 100.0 5.5E-44 1.9E-48 357.4 36.2 336 79-434 6-368 (425)
12 1q2l_A Protease III; hydrolase 100.0 1.4E-43 4.8E-48 388.8 38.0 345 73-431 18-381 (939)
13 3go9_A Insulinase family prote 100.0 2.7E-43 9.1E-48 359.5 31.1 335 74-433 24-382 (492)
14 3cww_A Insulysin, insulin-degr 100.0 1.9E-40 6.5E-45 365.8 35.5 343 73-429 32-395 (990)
15 3cx5_B Cytochrome B-C1 complex 100.0 1.8E-40 6.2E-45 324.2 27.8 311 85-434 1-316 (352)
16 2fge_A Atprep2;, zinc metallop 100.0 2.4E-40 8.1E-45 365.2 28.7 339 74-431 36-412 (995)
17 3s5m_A Falcilysin; M16 metallo 100.0 9.6E-40 3.3E-44 358.6 32.4 342 73-429 84-516 (1193)
18 1q2l_A Protease III; hydrolase 100.0 3.2E-31 1.1E-35 290.7 26.7 332 75-433 499-845 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 1.3E-29 4.5E-34 279.5 28.1 327 75-428 553-913 (995)
20 3cww_A Insulysin, insulin-degr 100.0 3.1E-28 1.1E-32 268.5 28.8 332 76-433 519-870 (990)
21 3s5m_A Falcilysin; M16 metallo 99.9 3.4E-25 1.1E-29 243.6 16.2 320 82-427 724-1108(1193)
22 3ih6_A Putative zinc protease; 99.7 8.5E-17 2.9E-21 143.2 13.7 121 299-434 18-139 (197)
23 3ih6_A Putative zinc protease; 98.3 9.2E-06 3.1E-10 71.3 13.6 161 94-262 22-192 (197)
24 3hdi_A Processing protease; CA 97.9 5.4E-05 1.8E-09 74.5 11.9 165 91-264 229-405 (421)
25 1hr6_B Beta-MPP, mitochondrial 97.9 0.00052 1.8E-08 67.9 19.1 168 91-262 241-426 (443)
26 3cx5_A Cytochrome B-C1 complex 97.9 0.00022 7.5E-09 70.1 15.9 172 87-264 223-414 (431)
27 3eoq_A Putative zinc protease; 97.9 6.6E-05 2.3E-09 73.6 11.9 162 92-262 230-402 (406)
28 3amj_B Zinc peptidase inactive 97.9 0.0005 1.7E-08 67.5 17.3 164 93-262 239-412 (424)
29 1pp9_A Ubiquinol-cytochrome C 97.8 0.0005 1.7E-08 68.2 15.8 169 91-264 245-429 (446)
30 1hr6_A Alpha-MPP, mitochondria 97.7 0.0017 5.8E-08 64.9 18.5 167 93-263 240-437 (475)
31 3gwb_A Peptidase M16 inactive 97.7 0.00011 3.7E-09 72.5 8.9 163 93-262 246-419 (434)
32 1pp9_B Ubiquinol-cytochrome C 97.5 0.0026 8.9E-08 62.5 16.4 165 93-262 249-428 (439)
33 3ami_A Zinc peptidase; alpha/b 97.4 0.00053 1.8E-08 67.9 9.8 162 95-262 243-420 (445)
34 3d3y_A Uncharacterized protein 97.0 0.0035 1.2E-07 61.2 10.8 162 92-262 250-420 (425)
35 3go9_A Insulinase family prote 96.5 0.037 1.3E-06 55.5 14.4 162 91-262 261-445 (492)
36 3cx5_B Cytochrome B-C1 complex 88.1 7 0.00024 36.3 13.3 111 303-433 10-121 (352)
37 1g6u_A Domain swapped dimer; d 29.6 79 0.0027 18.9 3.7 24 396-420 3-26 (48)
38 2l4w_A Uncharacterized protein 27.3 32 0.0011 25.9 2.1 45 218-262 60-104 (120)
39 3ov5_A VIRB7 (XAC2622), unchar 24.5 25 0.00085 25.0 1.0 45 218-262 30-74 (85)
40 2fcw_A Alpha-2-macroglobulin r 21.4 81 0.0028 23.9 3.3 25 400-424 10-34 (109)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=1.6e-57 Score=463.22 Aligned_cols=358 Identities=31% Similarity=0.535 Sum_probs=332.6
Q ss_pred CCeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeC
Q 013782 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS 153 (436)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 153 (436)
+.++.++|+||++|++.+.+.+.+++++++++|+++|++.+.|++|+++||+|+||.+++..++.+.++..|+.++++++
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57899999999999988877899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 013782 154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE 232 (436)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 232 (436)
++.+.|++++++++++.+|++|.+++.+|.|++++|+++|..+.+|++...++|...+.+.++..+| ++||+++.+|++
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999889999999999999999 899999999999
Q ss_pred hhhcCCCHHHHHHHhhhccCCCCeEEEEeCCCHHHHHHHHhhhcCCCCCCCCC-CCCCCCcCCCeeEEe------cCCCc
Q 013782 233 SALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPP-TEPKSVYIGGDYRQQ------ADSPE 305 (436)
Q Consensus 233 ~~l~~l~~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~~~~~-~~~~~~~~~~~~~~~------~~~~~ 305 (436)
+.|++++.++|++||+++|+|+||+++++|+++++++++++++|+.||..+.+ ....+.+.++..++. .+.++
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999865433 222334555555554 45788
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEE
Q 013782 306 THIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYAC 385 (436)
Q Consensus 306 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~ 385 (436)
+++.++|.+++ .++++..++.|++.||||+++||+|||||||+++||++||++.|++|++++++..+.+.|.|.|++.
T Consensus 244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~ 321 (475)
T 1hr6_A 244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS 321 (475)
T ss_dssp EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence 99999999876 5788999999999999999999999999999999999999999999999999888888899999999
Q ss_pred eCcchHHHHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 386 TGSDFVSKAVDLVVRELILIAT---PKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 386 ~~p~~~~~~~~~~~~~l~~l~~---~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
++|+++.++++.+.+++.++.+ .| ++++||++||++++.++.++++++
T Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~ 372 (475)
T 1hr6_A 322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESK 372 (475)
T ss_dssp ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSH
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999987 56 999999999999999999988864
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-53 Score=424.60 Aligned_cols=343 Identities=20% Similarity=0.265 Sum_probs=316.5
Q ss_pred eEEEEcCCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeCc
Q 013782 76 VKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR 154 (436)
Q Consensus 76 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 154 (436)
++.++|+||++|++.+.+ .+.+++.+++++|+++|+++..|++|+++||+|+||.+++..++.+.++.+|+.+|+++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 578999999999966555 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChh
Q 013782 155 EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPES 233 (436)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~ 233 (436)
+.+.|++++++++++.+|+++.+++ +|.|++++|+++|..+.+|++...++|...+.+.++..+| +|||+++..|+++
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCCC-CCcCCCeeEEecCC-CceEEEE
Q 013782 234 ALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK-SVYIGGDYRQQADS-PETHIAL 310 (436)
Q Consensus 234 ~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~ 310 (436)
+|++++.++|++||+++|.|+||+++++| ++++++.++++++|++||..+.+.... ....++...+..+. +++++.+
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 240 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVA 240 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTTCSSEEEEE
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecCCccceEEEE
Confidence 99999999999999999999999999999 999999999999999998654332211 12233445556666 8999999
Q ss_pred EeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEeCcch
Q 013782 311 AFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDF 390 (436)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~~p~~ 390 (436)
+|++++ .++++..++.|++.||||+ ++||||++||+ .|++|++++++..+.+.|.|.+++.++|++
T Consensus 241 ~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~ 306 (406)
T 3eoq_A 241 LFPGVA--YQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPAR 306 (406)
T ss_dssp EEECCC--TTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred EecCCC--CCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcch
Confidence 999987 6888999999999999986 44999999999 899999999988888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 391 VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 391 ~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
..++++.+.++|.++.++| ++++||++||++++.++.+++|++
T Consensus 307 ~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~ 349 (406)
T 3eoq_A 307 KGEVLAVLQEELDRLGREG-VGEEEVERAKTPLATGLVFAGETP 349 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999877 999999999999999999999875
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.3e-52 Score=420.26 Aligned_cols=344 Identities=26% Similarity=0.433 Sum_probs=317.8
Q ss_pred eEEEEcCCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeCc
Q 013782 76 VKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR 154 (436)
Q Consensus 76 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 154 (436)
++.++|+||++|++.+.+ .+.+++.+++++|+++|+++..|++|+++||+|+||.+++..++.+.++.+|+.+++++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 578999999999966555 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChh
Q 013782 155 EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPES 233 (436)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~ 233 (436)
+.+.|++++++++++.+|+++.+++.+|.|++++|++++..+.++++...++|...+.+.++..+| ++|++++.+|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC-CCCCcCCCeeEEecCCCceEEEEE
Q 013782 234 ALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE-PKSVYIGGDYRQQADSPETHIALA 311 (436)
Q Consensus 234 ~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 311 (436)
.|++++.++|++||+++|.|+||+++++| ++ ++++++++++|+.||..+.... ..+.+.+.......+.+++++.++
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~ 240 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLG 240 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCCSEEEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEEE
Confidence 99999999999999999999999999999 99 9999999999999987554332 223334444445567889999999
Q ss_pred eecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEeCcchH
Q 013782 312 FEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFV 391 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~~p~~~ 391 (436)
|++++ .++++.+++.|++.+|||+ +++|||++||++.|++|+++++...+.+.|.|.+++.++|++.
T Consensus 241 ~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (421)
T 3hdi_A 241 YPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQL 307 (421)
T ss_dssp EECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGH
T ss_pred EecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHH
Confidence 99986 6889999999999999975 4499999999999999999999887888999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 392 SKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 392 ~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
.++++.+.+++.+++++| ++++||++||+.++.++.+++|++
T Consensus 308 ~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~ 349 (421)
T 3hdi_A 308 DDLVYSIQETTSALAEKG-LTEKELENGKEQLKGSLMLSLEST 349 (421)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccCCH
Confidence 999999999999999887 999999999999999999998874
No 4
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=8.8e-52 Score=416.83 Aligned_cols=357 Identities=27% Similarity=0.443 Sum_probs=323.4
Q ss_pred CCCeEEEEcCCCcEEEEeeCCCC-eEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEe
Q 013782 73 PGKVKVTTLENGIRIASETSVSP-AASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILAS 151 (436)
Q Consensus 73 ~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 151 (436)
.+.++.++|+||++|++.+++.+ .+++.+++++|++.|++...|++|+++||+|+||++++..++.+.++.+|+.++++
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~ 83 (443)
T 1hr6_B 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAY 83 (443)
T ss_dssp -CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 46789999999999997777765 99999999999999999999999999999999999999999999999999999999
Q ss_pred eCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 013782 152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (436)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 230 (436)
++++.+.|++++++++++.+|+++.+++.+|.|++++|++++..+.++++...++|...+.+.++..+| ++||+++..|
T Consensus 84 t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (443)
T 1hr6_B 84 TSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILG 163 (443)
T ss_dssp ECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred ECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999899
Q ss_pred ChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCC------CCCcCCCeeEEe-cC
Q 013782 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP------KSVYIGGDYRQQ-AD 302 (436)
Q Consensus 231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~------~~~~~~~~~~~~-~~ 302 (436)
+.+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+... .+.+.+....+. .+
T Consensus 164 ~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (443)
T 1hr6_B 164 PIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENT 243 (443)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECTT
T ss_pred CHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccCC
Confidence 99999999999999999999999999999999 99999999999999999864332211 223334344333 34
Q ss_pred CCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEE
Q 013782 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (436)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i 382 (436)
.+++++.++|..++ +++++..++.|++.+||++. ...|+|+|+++||+++||++.|++|++++++..+.+.|.|.+
T Consensus 244 ~~~~~v~~~~~~~~--~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i 319 (443)
T 1hr6_B 244 LPTTHIAIALEGVS--WSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGM 319 (443)
T ss_dssp CSEEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEE
T ss_pred ccceEEEEEEecCC--CCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEE
Confidence 78999999999986 68899999999999998744 234578889999999999999999999998877778899999
Q ss_pred EEEeC--cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 383 YACTG--SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 383 ~~~~~--p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
++.++ |++..++++.+.+++.++.+.| ++++||++||+.++.++..+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~ 372 (443)
T 1hr6_B 320 YIVTDSNEHNVRLIVNEILKEWKRIKSGK-ISDAEVNRAKAQLKAALLLSLDGS 372 (443)
T ss_dssp EEEEETTTCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHTTCCSH
T ss_pred EEEecCChhHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHccCCH
Confidence 99999 9999999999999999999866 999999999999999999988764
No 5
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.1e-51 Score=416.70 Aligned_cols=354 Identities=28% Similarity=0.458 Sum_probs=322.0
Q ss_pred CCeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeC
Q 013782 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS 153 (436)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 153 (436)
+.++.++|+||++|++.+.+++.+++.+++++|++.|+++..|++|+++||+|+||.+++..++.+.++.+|+.++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57789999999999987777889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 013782 154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE 232 (436)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 232 (436)
++.+.|++++++++++.+|+++.+++.+|.|++++|+++|..+.+|++...++|...+.+.++..+| ++||+++..|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC--C--CCCcCCCeeEE-ecCCCce
Q 013782 233 SALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--P--KSVYIGGDYRQ-QADSPET 306 (436)
Q Consensus 233 ~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~--~--~~~~~~~~~~~-~~~~~~~ 306 (436)
+.|++++.++|++||+++|+|+||+++++| ++++++.++++++|+.||..+.+.. . .+.+.+....+ ..+.+++
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLA 251 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTSSSE
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecCCccce
Confidence 999999999999999999999999999999 9999999999999999986543321 1 22333444433 3446899
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEe
Q 013782 307 HIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (436)
Q Consensus 307 ~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~ 386 (436)
++.++|.+++ .++++..++.|++.+|||+.+ +.| +|+|+++|||++||+ .|++|++++++..+.+.|.|.+++.+
T Consensus 252 ~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~-~glay~~~s~~~~~~~~g~~~i~~~~ 326 (446)
T 1pp9_A 252 HVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAAT-NKLCQSFQTFNICYADTGLLGAHFVC 326 (446)
T ss_dssp EEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHH-HTCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHh-cCCeEEEEEecccCCCCeEEEEEEEE
Confidence 9999999986 678899999999999997655 444 678999999999996 48999999988777788999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 387 GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 387 ~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
+|++..++++.+.+++.++.+ | ++++||++||+.++.++.+.++++
T Consensus 327 ~~~~~~~~~~~i~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~ 372 (446)
T 1pp9_A 327 DHMSIDDMMFVLQGQWMRLCT-S-ATESEVLRGKNLLRNALVSHLDGT 372 (446)
T ss_dssp CTTSHHHHHHHHHHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999987 7 999999999999999999988874
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=9.5e-51 Score=408.51 Aligned_cols=357 Identities=30% Similarity=0.492 Sum_probs=325.5
Q ss_pred CCCCCeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeE
Q 013782 71 VEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILA 150 (436)
Q Consensus 71 ~~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 150 (436)
+..++++.++|+||++|++.+...+.+++.+++++|+..|++...|++|+++||+|+||++++..++.+.++..|+.+++
T Consensus 19 ~~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na 98 (439)
T 1pp9_B 19 PHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSV 98 (439)
T ss_dssp C-CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEE
T ss_pred ccCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEE
Confidence 34578899999999999965557789999999999999999999999999999999999999999999999999999999
Q ss_pred eeCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCC
Q 013782 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLA 230 (436)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 230 (436)
+++++.+.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.++..+|.+|++++..+
T Consensus 99 ~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g 178 (439)
T 1pp9_B 99 TSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178 (439)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSC
T ss_pred EecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999997789998899
Q ss_pred ChhhhcCCCHHHHHHHhhhccCCCCeEEEEeCCCHHHHHHHHhhhcCCCCCCCCCCCCCCCcCCCeeEEecCCCceEEEE
Q 013782 231 PESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIAL 310 (436)
Q Consensus 231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 310 (436)
+.++|++++.++|++||+++|.|+|++++++|-+++++.++++++|+ ||..+......+++.++...+..+.+++++.+
T Consensus 179 ~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 257 (439)
T 1pp9_B 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGDSLVHAAL 257 (439)
T ss_dssp CGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCCSEEEEEE
T ss_pred CHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCccceEEEE
Confidence 99999999999999999999999999999999889999999999998 87644332222334444445556788999999
Q ss_pred EeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEeCcch
Q 013782 311 AFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDF 390 (436)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~~p~~ 390 (436)
+|..++ .++++..++.|++.+|+|+++|++|| ||+++||++||++.|++|++++++..+.+.|.|.+++.++|++
T Consensus 258 ~~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~ 332 (439)
T 1pp9_B 258 VAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAAS 332 (439)
T ss_dssp EEECCC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGG
T ss_pred EecCCC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHH
Confidence 999986 68899999999999999999999888 7899999999999999999999887777789999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 391 VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 391 ~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
+.++++.+.+++.++.+.| ++++||+++|+.++.++..+++++
T Consensus 333 ~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~ 375 (439)
T 1pp9_B 333 AGDVIKAAYNQVKTIAQGN-LSNPDVQAAKNKLKAGYLMSVESS 375 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCH
Confidence 9999999999999999877 999999999999999999988764
No 7
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=2.9e-50 Score=406.23 Aligned_cols=349 Identities=20% Similarity=0.266 Sum_probs=312.6
Q ss_pred CCeEEEEcCCCcEEEEee-CCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEee
Q 013782 74 GKVKVTTLENGIRIASET-SVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA 152 (436)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~-~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 152 (436)
++++.++|+||++|++.+ ...+.+.+.+++++|++.|+++..|++|+++||+|+||++++..++.+.++.+|+.+++++
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 578999999999999554 4467999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhh-hhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 013782 153 SREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELG-ELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (436)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~-~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 230 (436)
+++.++|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++ ...++|...+.+.++..+| ++||+++..|
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 7889999999999999999 9999999999
Q ss_pred ChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC--CC-CCcCCCe-eEEecCCCc
Q 013782 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--PK-SVYIGGD-YRQQADSPE 305 (436)
Q Consensus 231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~--~~-~~~~~~~-~~~~~~~~~ 305 (436)
++++|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||..+.+.. .. +...+.. ..+..+..+
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAEL 244 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEECSS
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCCCc
Confidence 99999999999999999999999999999999 9999999999999999986543221 11 2222222 333445788
Q ss_pred eEEEEEeecCCC--CCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecc-cCC-CceEE
Q 013782 306 THIALAFEVPGG--WLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSI-FNN-TGLFG 381 (436)
Q Consensus 306 ~~v~~~~~~~~~--~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~-~~~-~~~f~ 381 (436)
+++.++|.++.. +.+.++..++.+++.||||+ +++||+++||++.|++|++++++.. ..+ .+.|.
T Consensus 245 ~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~ 313 (445)
T 3ami_A 245 PYLALAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFI 313 (445)
T ss_dssp CEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEE
T ss_pred cEEEEEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCCeEE
Confidence 999999999851 33378999999999999976 3499999999999999999998774 446 79999
Q ss_pred EEEEeCcch-HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 382 IYACTGSDF-VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 382 i~~~~~p~~-~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
|++.+.|++ ..++++.+.++|.++.+.| ++++||++||+.++.++.++++++
T Consensus 314 i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~t~~el~~ak~~~~~~~~~~~~~~ 366 (445)
T 3ami_A 314 LEGVPSKGVTIAQLETDLRAQVRDIAAKG-VTEAELSRVKSQMVAGKVYEQDSL 366 (445)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTTTSH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhCH
Confidence 999999985 9999999999999999877 999999999999999999998874
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.8e-49 Score=398.60 Aligned_cols=348 Identities=17% Similarity=0.165 Sum_probs=315.1
Q ss_pred CCCeEEEEcCCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEe
Q 013782 73 PGKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILAS 151 (436)
Q Consensus 73 ~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 151 (436)
.++++.++|+||++|++.+.+ .+.+++.+++++|++.+ +...|++|+++||+++||++++..++.+.++..|+.++++
T Consensus 11 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~ 89 (434)
T 3gwb_A 11 NLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNG 89 (434)
T ss_dssp -CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEE
T ss_pred CCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEee
Confidence 368899999999999965555 58999999999999999 8899999999999999999999999999999999999999
Q ss_pred eCceeEEEEEEccCCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 013782 152 ASREQMGYSFDALKTY--VPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPL 228 (436)
Q Consensus 152 ~~~~~~~~~~~~~~~~--l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 228 (436)
++++.+.|++++++++ ++.+|+++.+++.+|.|++++|+++++.+.+++++..++|...+.+.++..+| ++|++++.
T Consensus 90 t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
T 3gwb_A 90 AYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHAS 169 (434)
T ss_dssp ECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCT
T ss_pred ecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999998 99999999999999999999999999999999999899999999999999999 99999999
Q ss_pred CCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCCC--CCcCCCeeEEecCCCc
Q 013782 229 LAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK--SVYIGGDYRQQADSPE 305 (436)
Q Consensus 229 ~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~ 305 (436)
.|+.+.|++++.++|++||+++|.|+||+++++| ++++++.++++++|+.||..+.+..+. ....++...+..+..+
T Consensus 170 ~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (434)
T 3gwb_A 170 DGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQ 249 (434)
T ss_dssp TCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCSSE
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCCCc
Confidence 9999999999999999999999999999999999 999999999999999998764332221 2233344555566789
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEE
Q 013782 306 THIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYAC 385 (436)
Q Consensus 306 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~ 385 (436)
+++.++|..++ .++++..++.|++.||||+ ||+++||++||++.|++|++++++..+.+.+.|.|+++
T Consensus 250 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~ 317 (434)
T 3gwb_A 250 TSLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQ 317 (434)
T ss_dssp EEEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEE
T ss_pred eeEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEe
Confidence 99999999886 6889999999999999974 35699999999999999999999988888899999999
Q ss_pred eCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 386 TGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 386 ~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
++|+++.++++.+.+++.++.++| ++++||+++|+.++.++..+++++
T Consensus 318 ~~~~~~~~~~~~i~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~ 365 (434)
T 3gwb_A 318 TRAEMSEGTLKLVQDVFAEYLKNG-PTQKELDDAKRELAGSFPLSTASN 365 (434)
T ss_dssp EEGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHC---CCCCH
T ss_pred cchhhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhhhccCH
Confidence 999999999999999999998876 999999999999999999888764
No 9
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=2e-48 Score=389.99 Aligned_cols=346 Identities=20% Similarity=0.242 Sum_probs=312.8
Q ss_pred CCeEEEEcCCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCC----CCCHHHHHHHHHHcCCee
Q 013782 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTK----NRSHLRIVREVEAIGGSI 148 (436)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~----~~s~~~l~~~l~~~g~~~ 148 (436)
++++.++|+||++|++.+.+ .+.+++.+++++|+..|+++..|++|+++||+|+||+ +++..++.+.++.+|+.+
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 46789999999999965554 6799999999999999999999999999999999999 999999999999999999
Q ss_pred eEeeCceeEEEEEEccCCCH--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCC
Q 013782 149 LASASREQMGYSFDALKTYV--PEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALG 225 (436)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l--~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~ 225 (436)
+++++.+.+.|+++++++++ +.+|+++.+++.+|.|++++|+++++.+.++++...++|...+.+.++..+| ++||+
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 9999999999999999999999999999999998889999999999999999 89999
Q ss_pred CCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC-CCC-CcCCCeeEEecC
Q 013782 226 NPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE-PKS-VYIGGDYRQQAD 302 (436)
Q Consensus 226 ~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~-~~~-~~~~~~~~~~~~ 302 (436)
.+. +.++|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+.. ..+ ...+....+..+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 877 88999999999999999999999999999999 9999999999999999986443221 111 122334445556
Q ss_pred CCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEE
Q 013782 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (436)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i 382 (436)
.+++++.++|..+. .++++..++.|++.+||++ |+++|||++||++.|++|+++++...+.+.+.|.|
T Consensus 240 ~~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i 307 (424)
T 3amj_B 240 ATQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQI 307 (424)
T ss_dssp SSEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEE
T ss_pred CCccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeEEE
Confidence 78999999999876 6889999999999999964 26699999999999999999999887778899999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 383 YACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
+++++|+++.++++.+.+++.++.+.| ++++||+++|+.++.++..+++++
T Consensus 308 ~~~~~~~~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~ 358 (424)
T 3amj_B 308 GFETRAEKADEAVQVANDTLDAFLREG-PTDAELQAAKDNLINGFALRLDSN 358 (424)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTSGGGGSSH
T ss_pred EEEeCcccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhHhcCCH
Confidence 999999999999999999999998877 999999999999999998887764
No 10
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=1.9e-47 Score=383.44 Aligned_cols=343 Identities=20% Similarity=0.308 Sum_probs=305.5
Q ss_pred EEEEcCCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeCce
Q 013782 77 KVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASRE 155 (436)
Q Consensus 77 ~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 155 (436)
+.++|+||++|++.+.+ .+.+++.+++++|++.|+++..|++|+++||+++|+.+ +.++..|+.++++++++
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 46889999999965554 57999999999999999999999999999999998743 34788999999999999
Q ss_pred eEEEEEEccCCCHHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHhhhhcCCh-HHHHHHHHHHHhc-CCCCCCCCCC
Q 013782 156 QMGYSFDALKTYVPEMVELLVDCVRNPV---FLDWEVNEELRKLKSELGELHNNP-QGLLLEAIHSTGY-AGALGNPLLA 230 (436)
Q Consensus 156 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~---f~~~~~~~~~~~~~~e~~~~~~~p-~~~~~~~l~~~~~-~~~~~~~~~~ 230 (436)
++.|++++++++++.+|+++.+++.+|. |++++|+++|+.+.++++...++| ...+.+.++..+| ++|++++..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999888999 9999999999999 8999999999
Q ss_pred ChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCCC-CCcCCCeeEEe-cCCCceE
Q 013782 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK-SVYIGGDYRQQ-ADSPETH 307 (436)
Q Consensus 231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 307 (436)
+.+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||..+.+.... +.+.+....+. .+.++++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAW 234 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECTTSSSEE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCCCCCceE
Confidence 99999999999999999999999999999999 999999999999888888654322111 22333344443 3468999
Q ss_pred EEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCC-cccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEe
Q 013782 308 IALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKG-MHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (436)
Q Consensus 308 v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~g-m~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~ 386 (436)
+.++|..++ .++++..++.|++.||+++ ++||||+| |+++||++||++ |++|++++++..+.+.+.|.+++.+
T Consensus 235 v~~~~~~~~--~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe~-gl~y~v~~~~~~~~~~g~~~i~~~~ 308 (431)
T 3cx5_A 235 ISLAVEGEP--VNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQEY-QLCDNFNHFSLSYKDSGLWGFSTAT 308 (431)
T ss_dssp EEEEEECCC--TTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHTT-TCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEeecCC--CCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHhc-CceeeEeEeecccCCCceEEEEEee
Confidence 999999986 6889999999999999974 46899986 889999999975 9999999988777778999999999
Q ss_pred Cc-chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH--hccCC
Q 013782 387 GS-DFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM--NLESR 434 (436)
Q Consensus 387 ~p-~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~--~les~ 434 (436)
+| +++.++++.+.+++.++.+ | ++++||+++|+.++.++.. +++++
T Consensus 309 ~~~~~~~~~~~~~~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~ 357 (431)
T 3cx5_A 309 RNVTMIDDLIHFTLKQWNRLTI-S-VTDTEVERAKSLLKLQLGQLYESGNP 357 (431)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHHSCSCH
T ss_pred CchhhHHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhccCCH
Confidence 99 9999999999999999988 7 9999999999999999999 88764
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=5.5e-44 Score=357.37 Aligned_cols=336 Identities=16% Similarity=0.195 Sum_probs=296.2
Q ss_pred EEcCCCcEEEEeeC-CCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCC-CHHHHHHHHHHc-CCeeeEeeCce
Q 013782 79 TTLENGIRIASETS-VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNR-SHLRIVREVEAI-GGSILASASRE 155 (436)
Q Consensus 79 ~~L~NGl~v~~~~~-~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~-s~~~l~~~l~~~-g~~~~~~~~~~ 155 (436)
++|+||++|++.+. ..+.+++.+++++|+..++ .|++|+++||++.||.++ +..++.+.++.. |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 89999999996655 4689999999999997654 699999999999999998 889999999998 99999999988
Q ss_pred e----EEEEEEccCC-------CHHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHh
Q 013782 156 Q----MGYSFDALKT-------YVPEMVELLVDCVRNPV-----FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTG 219 (436)
Q Consensus 156 ~----~~~~~~~~~~-------~l~~~l~ll~~~~~~p~-----f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~ 219 (436)
. +.|+++++++ +++.+|+++.+++.+|. |++++|+++++.+.++++...++|...+.+.++..+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 8 5899999887 69999999999999999 999999999999999999888999999999999999
Q ss_pred c--CCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCC--CCCcCC
Q 013782 220 Y--AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP--KSVYIG 294 (436)
Q Consensus 220 ~--~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~--~~~~~~ 294 (436)
| ++|++++..++.++|++++.++|++||+++|.|+|++++++| ++++++++++ ++|+ ||..+..... .....+
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 689999999999999999999999999999999999999999 9999999999 9999 9864432211 111111
Q ss_pred -Ce--eEEecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeee
Q 013782 295 -GD--YRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFN 371 (436)
Q Consensus 295 -~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~ 371 (436)
.. .....+.+++++.++|..+.. .++++..++.|++.||||+ ++++||++||++.|++|+++++.
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lRe~~glaY~v~~~~ 308 (425)
T 3d3y_A 241 NVIEERTEREVLAQSKLNLAYNTDIY-YGDSYYFALQVFNGIFGGF-----------PHSKLFMNVREKEHLAYYASSSI 308 (425)
T ss_dssp SSCEEEEEEEECSSEEEEEEEECCCC-TTSTTHHHHHHHHHHHTTS-----------TTSHHHHHTTTTSCCCSEEEEEE
T ss_pred CcceeEEecCCccccEEEEEeecCCC-CCCchHHHHHHHHHHhCCC-----------hhhHHHHHHHHhcCeEEEEeccc
Confidence 11 222345789999999998633 5789999999999999975 34999999999999999999887
Q ss_pred cccCCCceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 372 SIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 372 ~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
.. +.|.|.|++.++|+++.++++.+.+++.++.+.| ++++||+++|+.++.++..+++++
T Consensus 309 ~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~ 368 (425)
T 3d3y_A 309 DT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRLGK-IRELEIEQTKAMLKNQYILALDNA 368 (425)
T ss_dssp ET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSCH
T ss_pred cc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhHHhcccCH
Confidence 54 3789999999999999999999999999999877 999999999999999999988764
No 12
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.4e-43 Score=388.83 Aligned_cols=345 Identities=14% Similarity=0.139 Sum_probs=303.4
Q ss_pred CCCeEEEEcCCCcEEEEee-CCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCC-HHHHHHHHHHcCCeeeE
Q 013782 73 PGKVKVTTLENGIRIASET-SVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS-HLRIVREVEAIGGSILA 150 (436)
Q Consensus 73 ~~~~~~~~L~NGl~v~~~~-~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~~ 150 (436)
...++..+|+||++|++.+ ...+.+.+.+++++|+++|+++..|++|++|||+|+||.+++ ..++.+.++.+|+.+|+
T Consensus 18 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA 97 (939)
T 1q2l_A 18 NRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNA 97 (939)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEE
T ss_pred CcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceE
Confidence 3468899999999999554 446799999999999999999999999999999999999997 46999999999999999
Q ss_pred eeCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 013782 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLL 229 (436)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 229 (436)
+++.+++.|++++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.++..+| +|||+++..
T Consensus 98 ~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 177 (939)
T 1q2l_A 98 STAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSG 177 (939)
T ss_dssp EECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCS
T ss_pred EECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CChhhhcC----CCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC--CCCCcCCC----eeE
Q 013782 230 APESALNR----LDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--PKSVYIGG----DYR 298 (436)
Q Consensus 230 ~~~~~l~~----l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~--~~~~~~~~----~~~ 298 (436)
|+.++|+. ++.++|++||++||+|+||+++++| ++++++.++++++|++||+...+.. ..+.+.+. ...
T Consensus 178 G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (939)
T 1q2l_A 178 GNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIH 257 (939)
T ss_dssp CCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEEE
T ss_pred CCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEEE
Confidence 99999999 9999999999999999999999999 9999999999999999986543221 11222221 222
Q ss_pred EecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeee--cccCC
Q 013782 299 QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFN--SIFNN 376 (436)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~--~~~~~ 376 (436)
...+.+++++.++|..|.. ....+..++.+++.+||++++ ++|+.+||+ .|++|+++++. ..+.+
T Consensus 258 ~~~~~~~~~l~i~~~~~~~-~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~~~~ 324 (939)
T 1q2l_A 258 YVPALPRKVLRVEFRIDNN-SAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIVNGN 324 (939)
T ss_dssp ECCSSCCCEEEEEEEEECC-GGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESSTTSS
T ss_pred EEeCCCCcEEEEEEEcCCh-HHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeeccccccCCC
Confidence 2334678999999999862 233367788999999998654 899999996 59999999875 33456
Q ss_pred CceEEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc
Q 013782 377 TGLFGIYACTGS---DFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNL 431 (436)
Q Consensus 377 ~~~f~i~~~~~p---~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~l 431 (436)
.+.|.|++.+.+ ++..++++.+.++|..+.+.| ++++||+++|+.++.++.+..
T Consensus 325 ~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~~k~~~~~~~~~~~ 381 (939)
T 1q2l_A 325 SGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKG-IDKQYFDELANVLDIDFRYPS 381 (939)
T ss_dssp EEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHSCC
T ss_pred ceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcccccC
Confidence 799999999887 589999999999999998887 999999999999999987765
No 13
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=2.7e-43 Score=359.47 Aligned_cols=335 Identities=14% Similarity=0.120 Sum_probs=281.3
Q ss_pred CCeEEEEcCCCcEEEE-eeC--CCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHH----HcCC
Q 013782 74 GKVKVTTLENGIRIAS-ETS--VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVE----AIGG 146 (436)
Q Consensus 74 ~~~~~~~L~NGl~v~~-~~~--~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~----~~g~ 146 (436)
+.++.++|+||++|++ ++. +.+.+++++++++|+++|++++.|++||++||+|+||.+++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999984 433 35699999999999999999999999999999999999999999987665 4789
Q ss_pred eeeEeeCceeEEEEEEccC---CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CC
Q 013782 147 SILASASREQMGYSFDALK---TYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AG 222 (436)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~ 222 (436)
.+|++++++.+.|++++++ ++++.+|+++.+++.+|.|++++|+++|..+.++++...++|....++ ...+ .+
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWR---YRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHHH---HHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHHH---HHhccCC
Confidence 9999999999999999998 679999999999999999999999999998888887777777654432 3345 55
Q ss_pred CCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCC--C-CCCcCCCe-e
Q 013782 223 ALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--P-KSVYIGGD-Y 297 (436)
Q Consensus 223 ~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~--~-~~~~~~~~-~ 297 (436)
+++++..+ +.|++++.++|++||++||+|+||+++++| ++++++.++++++|++||....... + .++..+.. .
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 66665432 579999999999999999999999999999 9999999999999999986543211 1 12222233 3
Q ss_pred EEecCCCceEEEEEeecCCCCCCCcchHHH------HHHHHhhCCCCCCCCCCCCCCcccHHHHHHHh--hcCCeEEEEe
Q 013782 298 RQQADSPETHIALAFEVPGGWLKDKEAIIL------TVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLN--EYQQIQSFSA 369 (436)
Q Consensus 298 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe--~~~~~Ys~~a 369 (436)
.+..+.+++++.++|..+. ..++|..++ .|++.+|+ ++|+.+||+ +.+++|++++
T Consensus 259 ~~~~~~~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~~~s 321 (492)
T 3go9_A 259 LMNEQAAQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLGFDC 321 (492)
T ss_dssp EEESSCSSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEEEEE
T ss_pred EEcCCCCCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhccccccccCc
Confidence 3455678999999999986 566776655 89999998 899999999 8899999999
Q ss_pred eecccCCCceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 013782 370 FNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLES 433 (436)
Q Consensus 370 ~~~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les 433 (436)
+.....+.+.| ++.+++++..++++.+.+++.++.+.| +|++||+++|+.++.++...+++
T Consensus 322 ~~~~~~~~~~~--~i~~~~~~~~~a~~~i~~el~~l~~~g-~te~EL~~aK~~~~~~l~~~~~~ 382 (492)
T 3go9_A 322 RVQYQRAQCAI--HLNTPVENLTANMTFVARELAALRANG-LSQAEFDALMTQKNDQLSKLFAT 382 (492)
T ss_dssp EEETTEEEEEE--EEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhhcceEE--EEEcCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 87665554444 445689999999999999999999877 99999999999999999887664
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.9e-40 Score=365.85 Aligned_cols=343 Identities=17% Similarity=0.176 Sum_probs=296.2
Q ss_pred CCCeEEEEcCCCcEEEE-eeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCH-HHHHHHHHHcCCeeeE
Q 013782 73 PGKVKVTTLENGIRIAS-ETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH-LRIVREVEAIGGSILA 150 (436)
Q Consensus 73 ~~~~~~~~L~NGl~v~~-~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~~~ 150 (436)
...++..+|+||++|++ ++...+.+++.+++++|++.|+++..|++|++|||+|+||.+++. .++.+.++.+|+.+|+
T Consensus 32 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA 111 (990)
T 3cww_A 32 KREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNA 111 (990)
T ss_dssp CCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEE
T ss_pred CcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeE
Confidence 46789999999999995 555567999999999999999999999999999999999999986 7999999999999999
Q ss_pred eeCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 013782 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLL 229 (436)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 229 (436)
+++.+.+.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+| +|||+++..
T Consensus 112 ~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~ 191 (990)
T 3cww_A 112 FTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGT 191 (990)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCS
T ss_pred EECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999889999999999999999 999999999
Q ss_pred CChhhhcCC-------CHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCC--CCCcCC---Ce
Q 013782 230 APESALNRL-------DGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP--KSVYIG---GD 296 (436)
Q Consensus 230 ~~~~~l~~l-------~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~--~~~~~~---~~ 296 (436)
|+++.|..+ +.++|++||++||+|+||+++++| ++++++.++++++|+.||....+... .+++.. +.
T Consensus 192 G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (990)
T 3cww_A 192 GNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQ 271 (990)
T ss_dssp CCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSSE
T ss_pred CCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcCe
Confidence 999999999 999999999999999999999999 99999999999999999865432211 112211 12
Q ss_pred -eEEecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecc-c
Q 013782 297 -YRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSI-F 374 (436)
Q Consensus 297 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~-~ 374 (436)
.......+++++.++|..+.. ....+..++.+++.+||+++ + ++ |+..||+ .|++|+++++... .
T Consensus 272 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~lLg~~~------~----~s-l~~~Lr~-~g~~~~~~a~~~~~~ 338 (990)
T 3cww_A 272 LYKIVPIKDIRNLYVTFPIPDL-QKYYKSNPGHYLGHLIGHEG------P----GS-LLSELKS-KGWVNTLVGGQKAGA 338 (990)
T ss_dssp EEEECCSSSCCEEEEEEEECCC-GGGTTTCHHHHHHHHHTCCS------T----TC-HHHHHHH-TTSCSCEEEEEEEEE
T ss_pred EEEEEECCCCcEEEEEEEcCCh-hhhhhhCHHHHHHHHhcCCC------C----Cc-HHHHHHH-CCCcceeeeccccCC
Confidence 222233578899999999862 23467889999999998642 2 25 5669997 4999999988763 4
Q ss_pred CCCceEEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 013782 375 NNTGLFGIYACTGS---DFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM 429 (436)
Q Consensus 375 ~~~~~f~i~~~~~p---~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~ 429 (436)
.+.+.|.|++.+.+ ++..++++.+.++|..+.+.| +++++|+++|......+.+
T Consensus 339 ~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g-~~~~~l~~~~~~~~~~~~~ 395 (990)
T 3cww_A 339 RGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEG-PQEWVFQELKDLNAVAFRF 395 (990)
T ss_dssp TTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHT
T ss_pred CCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccc
Confidence 45789999999765 489999999999999999888 9999999999887777654
No 15
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=1.8e-40 Score=324.19 Aligned_cols=311 Identities=22% Similarity=0.295 Sum_probs=265.6
Q ss_pred cEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeCceeEEEEEEcc
Q 013782 85 IRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDAL 164 (436)
Q Consensus 85 l~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 164 (436)
+||++++.+.|.+++++++++|+++|+ ..|++|+++||+|+||++++..++.+.++.+|+.++++++++++.|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 688988888999999999999999974 789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHH-HHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCCCHHHH
Q 013782 165 KTYVPEMVELLVDCVRNPVFLDWEVN-EELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTIL 243 (436)
Q Consensus 165 ~~~l~~~l~ll~~~~~~p~f~~~~~~-~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l 243 (436)
+++++.+|+++.+++.+|.|++++|+ ++|+.+.++++...++|...+.+.++..+|++|++++.. .+.|++++.++|
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999889998874 689999999999
Q ss_pred HHHhhhccCCCCeEEEEeCCCHHHHHHHH-hhhcCCCCCCCCCCC--CCCCcCCCeeEEecCCCceEEEEEeecCCCCCC
Q 013782 244 EEIVAENFTAPRMVLAASGVDLDELLPIA-EPLLSDLPRLPPPTE--PKSVYIGGDYRQQADSPETHIALAFEVPGGWLK 320 (436)
Q Consensus 244 ~~f~~~~~~~~~~~l~ivGv~~~~l~~~~-~~~~~~lp~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 320 (436)
++||+++|.|+||+++++|++++++++++ +++|+.||....... ..+.+.++...+.. ..++.+.+++. .+
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~ 230 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRF-IGDSVAAIGIP-----VN 230 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEEC-SSSEEEEEEEE-----EC
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEec-CCCceEEEecC-----CC
Confidence 99999999999999999999999999999 899999986443221 11223344444433 35666666532 45
Q ss_pred CcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEeC-cchHHHHHHHHH
Q 013782 321 DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTG-SDFVSKAVDLVV 399 (436)
Q Consensus 321 ~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~~-p~~~~~~~~~~~ 399 (436)
+++.+++.|++.+|| . +||++.|++ +++++..+.+.|.|.|+++++ ++++.+++.
T Consensus 231 ~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~~~~~~~~~i~--- 286 (352)
T 3cx5_B 231 KASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQDSAVVSSNIK--- 286 (352)
T ss_dssp TTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEESCHHHHHHHHH---
T ss_pred ChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeCCHHHHHHHHH---
Confidence 679999999999998 3 678888886 556555566789999999997 555444444
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 400 RELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 400 ~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
+++.+ + ++++||++||+.++.++.+++++.
T Consensus 287 ~~l~~----~-~t~~el~~ak~~~~~~~~~~~~~~ 316 (352)
T 3cx5_B 287 KIVAD----L-KKGKDLSPAINYTKLKNAVQNESV 316 (352)
T ss_dssp HHHHH----H-HSCEECGGGHHHHHHHHHHHCCST
T ss_pred HHHHh----c-CCHHHHHHHHHHHHHHHHhhhhcc
Confidence 44432 4 889999999999999999999874
No 16
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.4e-40 Score=365.15 Aligned_cols=339 Identities=12% Similarity=0.079 Sum_probs=288.6
Q ss_pred CCeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHH-HHHHHH-HcCCeeeEe
Q 013782 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLR-IVREVE-AIGGSILAS 151 (436)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~-l~~~l~-~~g~~~~~~ 151 (436)
..++..+|+||++|++.+.+.... ++..|++.++++..|++|++|||+|+||.+++..+ +.+.+. ..|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 456778999999999666554432 36778889999999999999999999999999777 445454 468899999
Q ss_pred eCceeEEEEEEcc-CCCHHHHHHHHHHhhhCCCC--CHHHHHHH---------------HHHHHHHhhhhcCChHHHHHH
Q 013782 152 ASREQMGYSFDAL-KTYVPEMVELLVDCVRNPVF--LDWEVNEE---------------LRKLKSELGELHNNPQGLLLE 213 (436)
Q Consensus 152 ~~~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~f--~~~~~~~~---------------~~~~~~e~~~~~~~p~~~~~~ 213 (436)
++.|+++|.+.+. .++++.+|+++.|++.+|.| ++++|+++ +..+.+|++...++|...+.+
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~ 191 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGR 191 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHH
Confidence 9999999999875 56899999999999999999 99999999 889999999988999999999
Q ss_pred HHHHHhc-CCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCC--CCC--CCCC
Q 013782 214 AIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLP--RLP--PPTE 287 (436)
Q Consensus 214 ~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp--~~~--~~~~ 287 (436)
.++..+| +|||+++..|++++|..++.++|++||++||+|+||+++++| +|+++++++++++|+.|| ... ....
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~ 271 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK 271 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC
Confidence 9999999 999999999999999999999999999999999999999999 999999999999999998 422 1111
Q ss_pred CCCCcCCCe---eEEe-----cCCCceEEEEEeecCCCCCC--CcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHH
Q 013782 288 PKSVYIGGD---YRQQ-----ADSPETHIALAFEVPGGWLK--DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRV 357 (436)
Q Consensus 288 ~~~~~~~~~---~~~~-----~~~~~~~v~~~~~~~~~~~~--~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~l 357 (436)
..+++.... .... .+.+++++.++|..+. .. .++..++.+|+.+|+|+. +|+|+++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~a~~vl~~~Lg~~~-----------~S~L~~~l 338 (995)
T 2fge_A 272 FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE--KPLDLQTQLALGFLDHLMLGTP-----------ASPLRKIL 338 (995)
T ss_dssp CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS--SCCCHHHHHHHHHHHHHHHSST-----------TSHHHHHH
T ss_pred CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCC--CcCCHHHHHHHHHHHHHHcCCC-----------CCHHHHHH
Confidence 122333321 1221 1256899999999986 34 589999999999998753 39999999
Q ss_pred HhhcCCeEEEEee-ecccCCCceEEEE-EEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc
Q 013782 358 LNEYQQIQSFSAF-NSIFNNTGLFGIY-ACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNL 431 (436)
Q Consensus 358 Re~~~~~Ys~~a~-~~~~~~~~~f~i~-~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~l 431 (436)
|++ |++|+++++ +....+.+.|.|. ..+++++..++++.+.++|.++.++| ++++||+++|++++.++....
T Consensus 339 ~e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~ak~~~~~~~~~~~ 412 (995)
T 2fge_A 339 LES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEG-FDNDAVEASMNTIEFSLRENN 412 (995)
T ss_dssp HHT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCC
T ss_pred Hhc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcc
Confidence 986 999999876 5555567899986 46899999999999999999999888 999999999999999887643
No 17
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=9.6e-40 Score=358.58 Aligned_cols=342 Identities=12% Similarity=0.077 Sum_probs=288.0
Q ss_pred CCCeEEEEcCCCcEEEEeeCCCC-eEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHH--cCCeee
Q 013782 73 PGKVKVTTLENGIRIASETSVSP-AASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEA--IGGSIL 149 (436)
Q Consensus 73 ~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~--~g~~~~ 149 (436)
.+.++..+|+||++|++.+.+.+ .+. ..+..|++.++++..|++|++|||+|+||.+++..++...+.. .|+.+|
T Consensus 84 ~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lN 161 (1193)
T 3s5m_A 84 MTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLN 161 (1193)
T ss_dssp EEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEE
T ss_pred ccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEE
Confidence 45788999999999995544433 222 3345677788999999999999999999999999999889988 899999
Q ss_pred EeeCceeEEEEEEccC-CCHHHHHHHHHHhhhCCCCCHHH--HHHH-----------------------------HHHHH
Q 013782 150 ASASREQMGYSFDALK-TYVPEMVELLVDCVRNPVFLDWE--VNEE-----------------------------LRKLK 197 (436)
Q Consensus 150 ~~~~~~~~~~~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~--~~~~-----------------------------~~~~~ 197 (436)
++++.|+++|.++++. ++++.+|+++.|++.+|.|++++ |.++ +..+.
T Consensus 162 A~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~ 241 (1193)
T 3s5m_A 162 AYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVY 241 (1193)
T ss_dssp EEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHH
T ss_pred eEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHH
Confidence 9999999999999887 99999999999999999998877 8776 56899
Q ss_pred HHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhh
Q 013782 198 SELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPL 275 (436)
Q Consensus 198 ~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~ 275 (436)
+|++...++|...+.+.+...+| +|||+++..|++++|..++.++|++||++||+|+|++++++| ++++++.++++++
T Consensus 242 ~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~ 321 (1193)
T 3s5m_A 242 NEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQY 321 (1193)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHH
Confidence 99999899999999999999999 999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCCCCCC----C--CCCCcCCC-eeEEe----cCCCceEEEEEeecCCC---CCC---------------------
Q 013782 276 LSDLPRLPPPT----E--PKSVYIGG-DYRQQ----ADSPETHIALAFEVPGG---WLK--------------------- 320 (436)
Q Consensus 276 ~~~lp~~~~~~----~--~~~~~~~~-~~~~~----~~~~~~~v~~~~~~~~~---~~~--------------------- 320 (436)
|+.||..+... . ..+++.+. ..... .+.+++++.++|..++. ..+
T Consensus 322 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~ 401 (1193)
T 3s5m_A 322 LGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSH 401 (1193)
T ss_dssp HTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCC
T ss_pred hccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccc
Confidence 99998543211 1 11122222 22221 23678999999999741 012
Q ss_pred --------CcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEE-eeecccCCCceEEEEEE-eCcch
Q 013782 321 --------DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFS-AFNSIFNNTGLFGIYAC-TGSDF 390 (436)
Q Consensus 321 --------~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~-a~~~~~~~~~~f~i~~~-~~p~~ 390 (436)
+++..++.||+.||+||.+ ||||++||++ |++|+++ +++......+.|.|++. +++++
T Consensus 402 ~~~~~~~~~~d~~al~vL~~iLggg~s-----------SrL~~~L~e~-gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~ 469 (1193)
T 3s5m_A 402 SSDLSLENPTDYFVLLIINNLLIHTPE-----------SVLYKALTDC-GLGNNVIDRGLNDSLVQYIFSIGLKGIKRNN 469 (1193)
T ss_dssp CSTTCCCSHHHHHHHHHHHHHHHSSTT-----------SHHHHHHHHH-CSCSEEEEEEEECSSSSCEEEEEEEEECTTC
T ss_pred cccccccCccHHHHHHHHHHHHCCCCC-----------CHHHHHHHhc-CCeeeecccccccccCCcEEEEEEecCChhh
Confidence 4789999999999998644 9999999984 9999998 66766667788999874 55543
Q ss_pred --------H-HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 013782 391 --------V-SKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM 429 (436)
Q Consensus 391 --------~-~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~ 429 (436)
+ .++.+.+.++|+++.++| ++++||+++|+++..++..
T Consensus 470 ~~~~~~~~~~~~~~~~I~~~L~~l~~~g-i~~~ele~a~~~le~~~re 516 (1193)
T 3s5m_A 470 EKIKNFDKVHYEVEDVIMNALKKVVKEG-FNKSAVEASINNIEFILKE 516 (1193)
T ss_dssp TTCSCGGGHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHh
Confidence 5 699999999999999988 9999999999999998866
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.98 E-value=3.2e-31 Score=290.72 Aligned_cols=332 Identities=10% Similarity=0.029 Sum_probs=264.1
Q ss_pred CeEEEEcCCCcEEEEeeCC---C-CeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeE
Q 013782 75 KVKVTTLENGIRIASETSV---S-PAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILA 150 (436)
Q Consensus 75 ~~~~~~L~NGl~v~~~~~~---~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 150 (436)
.++.++|+||++||.++++ . |++.|.+.+.+|...+++...|+++++..|+..|+.++ ....+..|.++++
T Consensus 499 ~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~-----~~~~~l~G~~~~~ 573 (939)
T 1q2l_A 499 HPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL-----SNQASVGGISFST 573 (939)
T ss_dssp SCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHHTTEEEEE
T ss_pred CCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH-----hhHHHHcCcEEEE
Confidence 4468899999999976665 2 49999999999999988777899999999998775433 3344556777888
Q ss_pred eeCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhh-cCChHHHHHHHHHHHhcCCCCCCCCC
Q 013782 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGEL-HNNPQGLLLEAIHSTGYAGALGNPLL 229 (436)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~-~~~p~~~~~~~l~~~~~~~~~~~~~~ 229 (436)
+. .++..+++++.+++++.+|+++.+.+.+|.|++++|+++|+.++.++++. .++|..++.+.++..+|.+ + ++..
T Consensus 574 ~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~-~-~~~~ 650 (939)
T 1q2l_A 574 NA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP-Y-FSRD 650 (939)
T ss_dssp EE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS-C-CCHH
T ss_pred ee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC-C-CCHH
Confidence 88 89999999999999999999999999999999999999999999999987 5579999999999988832 2 4445
Q ss_pred CChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHHHhhhcCCCCCCCCCCCCC--CCcCCC-eeEE--ecCC
Q 013782 230 APESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK--SVYIGG-DYRQ--QADS 303 (436)
Q Consensus 230 ~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~~~~~~~~lp~~~~~~~~~--~~~~~~-~~~~--~~~~ 303 (436)
++.+.|++++.+++++|++++|.+.+++++++| +++++++++++++++.|+..+...... ....++ ...+ ..+.
T Consensus 651 ~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (939)
T 1q2l_A 651 ERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNS 730 (939)
T ss_dssp HHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEEECCCSCEEEEEEECCSS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccceEEeCCCceEEEecCCCC
Confidence 678999999999999999999999999999999 999999999999998887543222111 112223 2222 2223
Q ss_pred CceEE-EEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccc-CCCce-E
Q 013782 304 PETHI-ALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIF-NNTGL-F 380 (436)
Q Consensus 304 ~~~~v-~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~-~~~~~-f 380 (436)
.++.+ .++|..+. .+.++.+.+.+|..++. ++||++||++.|++|+|+++.... ...|. |
T Consensus 731 ~~~~~~~~~~~~~~--~~~~~~~~~~lL~~~~~---------------s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~ 793 (939)
T 1q2l_A 731 TDSALAAVFVPTGY--DEYTSSAYSSLLGQIVQ---------------PWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGF 793 (939)
T ss_dssp SCEEEEEEEECSSC--CHHHHHHHHHHHHHHHH---------------HHHTHHHHTSCCSSSCEEEEEEEETTEEEEEE
T ss_pred CCceeEEEEEecCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhCceeeeeEeecCCeeEEEE
Confidence 44555 56665542 34455555666555554 999999999999999999987633 33443 6
Q ss_pred EEEE-EeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 013782 381 GIYA-CTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLES 433 (436)
Q Consensus 381 ~i~~-~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les 433 (436)
.|+. .++|+++.++++.+.+++.++.. | +|++||+++|+.++.++..+.++
T Consensus 794 ~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~-~t~~el~~~k~~l~~~~~~~~~s 845 (939)
T 1q2l_A 794 LLQSNDKQPSFLWERYKAFFPTAEAKLR-A-MKPDEFAQIQQAVITQMLQAPQT 845 (939)
T ss_dssp EEEESSSCHHHHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHTCCCSS
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCC
Confidence 6666 67899999999999999999874 6 99999999999999999887664
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.97 E-value=1.3e-29 Score=279.48 Aligned_cols=327 Identities=12% Similarity=0.025 Sum_probs=260.2
Q ss_pred CeEEEEcCCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcc-cCCCCCHHHHHHHHHHcCCeeeE--
Q 013782 75 KVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-STKNRSHLRIVREVEAIGGSILA-- 150 (436)
Q Consensus 75 ~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~-- 150 (436)
.++.+ +.||++|++.+.+ .+.+++.+++++|+. ++...++++++.++++. ||++++..++.+.++...+.+++
T Consensus 553 ~~~~~-~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~ 629 (995)
T 2fge_A 553 PTEVG-DINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYP 629 (995)
T ss_dssp CCEEE-ESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEE
T ss_pred Cceee-ecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeec
Confidence 34433 4899999976655 569999999999886 45678999999999875 99999999999999966665666
Q ss_pred ---eeCc-----eeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHhhhhc-CChHHHHHHHHHHHhc
Q 013782 151 ---SASR-----EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDW-EVNEELRKLKSELGELH-NNPQGLLLEAIHSTGY 220 (436)
Q Consensus 151 ---~~~~-----~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~-~~~~~~~~~~~e~~~~~-~~p~~~~~~~l~~~~~ 220 (436)
+++. +.+.+++++++++++.+|+++.+++.+|.|+++ +|++.++.++.++++.. +++..++.+.++...+
T Consensus 630 ~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~ 709 (995)
T 2fge_A 630 LTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLN 709 (995)
T ss_dssp EEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTC
T ss_pred cccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCC
Confidence 5544 889999999999999999999999999999999 99999999999999775 5777777888876644
Q ss_pred -CCCCCCCC-----CCCh--------hhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCH-HHHHHHHhhhcCCC-CCCC
Q 013782 221 -AGALGNPL-----LAPE--------SALNRLDGTILEEIVAENFTAPRMVLAASG-VDL-DELLPIAEPLLSDL-PRLP 283 (436)
Q Consensus 221 -~~~~~~~~-----~~~~--------~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~-~~l~~~~~~~~~~l-p~~~ 283 (436)
.++++... +... +.++.+ .++|++||+++|.+++|+++++| +++ +++.++++++|+.+ |...
T Consensus 710 ~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~ 788 (995)
T 2fge_A 710 IAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPS 788 (995)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCS
T ss_pred hhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCC
Confidence 44442211 1111 557888 99999999999999999999999 995 99999999999999 7543
Q ss_pred CCCCCCCCcCCC--eeEEecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhc
Q 013782 284 PPTEPKSVYIGG--DYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEY 361 (436)
Q Consensus 284 ~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~ 361 (436)
..... ..+..+ ......+....++..++.... +++++.+++.|++.||++ ++||++||+ .
T Consensus 789 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iRe-~ 850 (995)
T 2fge_A 789 GGLVT-WDGRLPLRNEAIVIPTQVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVRV-S 850 (995)
T ss_dssp SCSCC-CCCCCCCCCEEEECSCSSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTTT-T
T ss_pred CCCCc-ccccCCccceEEEecCceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhhh-c
Confidence 32211 111111 112333455666666776654 689999999999999995 699999999 7
Q ss_pred CCeEEEEeeecccCCCceEE-EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 013782 362 QQIQSFSAFNSIFNNTGLFG-IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVL 428 (436)
Q Consensus 362 ~~~Ys~~a~~~~~~~~~~f~-i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~ 428 (436)
|++|++++++.. .|.|+ ++...+| ++.++++.+.+.+..+...+ +|++||++||..+++++.
T Consensus 851 g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~-~te~el~~ak~~li~~~~ 913 (995)
T 2fge_A 851 GGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLD-VDQETLTKAIIGTIGDVD 913 (995)
T ss_dssp TCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCC-CCHHHHHHHHHHHHHHHT
T ss_pred CCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcc
Confidence 999999998765 48888 8888888 57888888888888777544 999999999999999883
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.96 E-value=3.1e-28 Score=268.47 Aligned_cols=332 Identities=11% Similarity=0.029 Sum_probs=265.4
Q ss_pred eEEEEcCCCcEEEEeeCC---CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEee
Q 013782 76 VKVTTLENGIRIASETSV---SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA 152 (436)
Q Consensus 76 ~~~~~L~NGl~v~~~~~~---~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 152 (436)
+..++++||++||..+.+ .|...+.+.+.+|...+++...++++|+..|+..+ ++..++...+ .|+++++++
T Consensus 519 p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~~~~~~~~l--~G~~~~~~~ 593 (990)
T 3cww_A 519 PALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LNEYAYAAEL--AGLSYDLQN 593 (990)
T ss_dssp CEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHH--TTEEEEEEE
T ss_pred CeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HHHhhhHHHh--CCeEEEEEE
Confidence 467889999999966555 46888888888888888877789999999998653 3444454444 588899999
Q ss_pred CceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcC-ChHHHHHHHHHHHhcCCCCCCCCCCC
Q 013782 153 SREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHN-NPQGLLLEAIHSTGYAGALGNPLLAP 231 (436)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~-~p~~~~~~~l~~~~~~~~~~~~~~~~ 231 (436)
+.+++.+++++++++++.+|+++.+.+.+|.|++++|++.++.++..+++... +|..++.+.+...++.+++.. .+.
T Consensus 594 ~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~--~~~ 671 (990)
T 3cww_A 594 TIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTK--DEL 671 (990)
T ss_dssp ETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCH--HHH
T ss_pred cCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCH--HHH
Confidence 99999999999999999999999999999999999999999999999997766 899999999999888544432 346
Q ss_pred hhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CCHHHHHHH---HhhhcCCCCCCCCCC-----C-CCCC-cCCCeeEE-
Q 013782 232 ESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPI---AEPLLSDLPRLPPPT-----E-PKSV-YIGGDYRQ- 299 (436)
Q Consensus 232 ~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~~---~~~~~~~lp~~~~~~-----~-~~~~-~~~~~~~~- 299 (436)
.+.|++++.++|.+|++++|.+.+++++++| ++++++.++ ++++++.+|...+.. . .... ..+....+
T Consensus 672 ~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (990)
T 3cww_A 672 KEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQ 751 (990)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEE
Confidence 7889999999999999999999999999999 999999888 667777665321111 0 1001 12222222
Q ss_pred -ec-CCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCC
Q 013782 300 -QA-DSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNT 377 (436)
Q Consensus 300 -~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~ 377 (436)
.. +..++.+.+++..+. ++.++.+++.|++++|. ++||.+||++.|++|++++++....+.
T Consensus 752 ~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~---------------~~lf~~LRek~~lgY~v~s~~~~~~g~ 814 (990)
T 3cww_A 752 QRNEVHNNSGIEIYYQTDM--QSTSENMFLELFAQIIS---------------EPAFNTLRTKEQLGYIVFSGPRRANGI 814 (990)
T ss_dssp EECSSCSSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH---------------HHHHHHHTTTTCCCSEEEEEEEEETTE
T ss_pred ecCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCcEEEEEEEEeeCCE
Confidence 22 355666667677654 58899999999999997 999999999999999999987654433
Q ss_pred ceE--EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 013782 378 GLF--GIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLES 433 (436)
Q Consensus 378 ~~f--~i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les 433 (436)
..| .++..++|+++.++++.+.+++..+.. + ++++||+++|+.+++++....++
T Consensus 815 ~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~-~te~el~~~k~~li~~~~~~~~~ 870 (990)
T 3cww_A 815 QGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-D-MTEEAFQKHIQALAIRRLDKPKK 870 (990)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-H-SCHHHHHHHHHHHHHHHHCCCSS
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-h-cCHHHHHHHHHHHHHHhcCCCCC
Confidence 333 335556788999999999999999987 5 99999999999999999765544
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.92 E-value=3.4e-25 Score=243.56 Aligned_cols=320 Identities=13% Similarity=0.092 Sum_probs=238.6
Q ss_pred CCCcEEEEeeCC-CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcc-cCCCCCHHHHHHHHHHcCCeeeEeeC------
Q 013782 82 ENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-STKNRSHLRIVREVEAIGGSILASAS------ 153 (436)
Q Consensus 82 ~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~~~~------ 153 (436)
.||++|+..+.+ ++.+++.++++.|... .+..++..|+..++.+ ||+++++.++...++.++|+++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999966655 5699999999999644 3467888888888765 99999999999999999999888863
Q ss_pred ----------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHhhh-hcCChHHHHHHHHHHHhc-
Q 013782 154 ----------REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWE-VNEELRKLKSELGE-LHNNPQGLLLEAIHSTGY- 220 (436)
Q Consensus 154 ----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~~~~~~~e~~~-~~~~p~~~~~~~l~~~~~- 220 (436)
...+.++++++.++++.+++++.+++.+|+|++.+ +++.++..+..+.. ...+...++...+.+...
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 34578999999999999999999999999999875 77777766666653 333444444444443333
Q ss_pred CCCCCCCCCCChhh--------------hcCCCHHHHHHHhhhccCCCCeEEEEeC-CC-HHHHHHHHhhhcCCCCC---
Q 013782 221 AGALGNPLLAPESA--------------LNRLDGTILEEIVAENFTAPRMVLAASG-VD-LDELLPIAEPLLSDLPR--- 281 (436)
Q Consensus 221 ~~~~~~~~~~~~~~--------------l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~-~~~l~~~~~~~~~~lp~--- 281 (436)
.+++.....| .+. ++.| .++|++++++.|+++|+++.++| .+ .+++.+.++++++.++.
T Consensus 882 ~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~ 959 (1193)
T 3s5m_A 882 KHYAHNIIYG-YENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFE 959 (1193)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHH
T ss_pred chhhhhhhCC-hHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccc
Confidence 2222211111 122 2233 67999999999999999999999 65 57777776666655531
Q ss_pred -CCC----------CC-CC--------CCCc-C--CCeeEEecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCC
Q 013782 282 -LPP----------PT-EP--------KSVY-I--GGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGG 338 (436)
Q Consensus 282 -~~~----------~~-~~--------~~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~ 338 (436)
... .. .. ...+ . .....+..+.++++++.++.... ..+++++++.|++.|||+
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~-- 1035 (1193)
T 3s5m_A 960 ENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFK--PGEYLDPSFTVIVAALKN-- 1035 (1193)
T ss_dssp HGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH--
T ss_pred cccccccccccccccccccccccccccccccccccccceeEecCCcceEEEEEecCCC--CCCCchHHHHHHHHHHCc--
Confidence 000 00 00 0001 1 11233456788999999988776 788999999999999995
Q ss_pred CCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEEeCcchHHHHHHHHHHHHHHhhC--CCCCCHHHH
Q 013782 339 SFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIAT--PKQVTQVQL 416 (436)
Q Consensus 339 s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~l~~--~g~~~~~el 416 (436)
++||++|||+.| +|++++++. ..|.|.++...+|. ..+.++.+.+++..+.+ ++ +|++||
T Consensus 1036 ------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp~-~~~tl~~~~~~~~~l~~~~~~-~teeEL 1097 (1193)
T 3s5m_A 1036 ------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDPN-LEKTLATFRESAKGLRKMADT-MTENDL 1097 (1193)
T ss_dssp ------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBSC-SHHHHHHHHTHHHHHHHHHHH-CCHHHH
T ss_pred ------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhhcCC-CCHHHH
Confidence 899999999855 999999876 57889998888884 77888888777777665 46 999999
Q ss_pred HHHHHHHHHHH
Q 013782 417 NRAKEATKSAV 427 (436)
Q Consensus 417 ~~aK~~l~~~l 427 (436)
++||.++++++
T Consensus 1098 ~~ak~~~~~~~ 1108 (1193)
T 3s5m_A 1098 LRYIINTIGTI 1108 (1193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999985
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.71 E-value=8.5e-17 Score=143.24 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=108.4
Q ss_pred EecCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCc
Q 013782 299 QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTG 378 (436)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~ 378 (436)
+..+.+++++.++|.+|+ .++++..++.|++.+|+|| ++||||++||++ |++|++++++..+.+.|
T Consensus 18 ~~~~~~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~g 83 (197)
T 3ih6_A 18 LRRAGGTPLVAAMYHLPA--AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDPG 83 (197)
T ss_dssp ----CCSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSSC
T ss_pred EECCCCCceEEEEEecCC--CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCCe
Confidence 445578999999999997 6889999999999999976 449999999997 99999999888778899
Q ss_pred eEEEEEEeCcc-hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782 379 LFGIYACTGSD-FVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (436)
Q Consensus 379 ~f~i~~~~~p~-~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~ 434 (436)
.|.|++.++|+ +..++.+.+.++|.++.++| ++++||++||+.++.++.++++++
T Consensus 84 ~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~-it~~el~~ak~~~~~~~~~~~~~~ 139 (197)
T 3ih6_A 84 LAMFGAQLQPGMDQDKALQTLTATLESLSSKP-FSQEELERARSKWLTAWQQTYADP 139 (197)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHCTTTSC-CCHHHHHHHHHHHHHHHHHHHTSH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhhcCH
Confidence 99999999998 59999999999999999887 999999999999999999998875
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.31 E-value=9.2e-06 Score=71.30 Aligned_cols=161 Identities=4% Similarity=-0.038 Sum_probs=109.1
Q ss_pred CCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEee------CceeEEEEEEccCC-
Q 013782 94 SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA------SREQMGYSFDALKT- 166 (436)
Q Consensus 94 ~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~------~~~~~~~~~~~~~~- 166 (436)
.+...+.+.+.+....++ ..-...++..++..|... .|.+.+...|...+++. ....+.+.+.+.++
T Consensus 22 ~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLggg~sS----rL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~ 95 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGSP--DFVGLDLAATILADTPSS----RLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGM 95 (197)
T ss_dssp CCSCEEEEEEECCCTTST--THHHHHHHHHHHHSSTTS----HHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTS
T ss_pred CCCceEEEEEecCCCCCC--cHHHHHHHHHHHcCCCCc----hHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCC
Confidence 355556666666654443 445667777777544322 34444433444333332 12345566666666
Q ss_pred CHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCCCHHHH
Q 013782 167 YVPEMVELLVDCVRN---PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTIL 243 (436)
Q Consensus 167 ~l~~~l~ll~~~~~~---p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l 243 (436)
+++.+++.+.+.+.. -.|++++++++|..++..+....+++...+........++.+. ......+.|+++|.+++
T Consensus 96 ~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~~--~~~~~~~~i~~vT~~dv 173 (197)
T 3ih6_A 96 DQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWR--LFFLQRDRVREAKLDDV 173 (197)
T ss_dssp CHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCTT--HHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCHHHH
Confidence 699888888766644 4599999999999999999988889988877776665542111 11223577999999999
Q ss_pred HHHhhhccCCCCeEEEEeC
Q 013782 244 EEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 244 ~~f~~~~~~~~~~~l~ivG 262 (436)
+++.++++.+++.+++++|
T Consensus 174 ~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 174 QRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHHSSGGGCEEEEEC
T ss_pred HHHHHHhCCccCeEEEEEe
Confidence 9999999999999998887
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.94 E-value=5.4e-05 Score=74.53 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=111.5
Q ss_pred eCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHH-HcCCeeeEeeC------ceeEEEEEEc
Q 013782 91 TSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVE-AIGGSILASAS------REQMGYSFDA 163 (436)
Q Consensus 91 ~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~~~~~~ 163 (436)
..+.+...+.+.+.+.....+ ......++..++..|. ...|.+.+. ..|..++++.. ...+.+.+.+
T Consensus 229 ~~~~~q~~v~~~~~~~~~~~~--d~~~l~vl~~iLgg~~----~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~ 302 (421)
T 3hdi_A 229 KKETEQAHLCLGYPGLPIGDK--DVYALVLLNNVLGGSM----SSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGT 302 (421)
T ss_dssp ECCCSEEEEEEEEECCCTTCT--THHHHHHHHHHHTSSS----SSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEE
T ss_pred cCCCCceEEEEEEecCCCCCc--hHHHHHHHHHHhCCCc----ccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEe
Confidence 345567777777776544332 4455667777774432 234545553 34544433321 2345566677
Q ss_pred cCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcCCC
Q 013782 164 LKTYVPEMVELLVDCVR---NPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLD 239 (436)
Q Consensus 164 ~~~~l~~~l~ll~~~~~---~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~l~ 239 (436)
.+++.+++++.+.+.+. +-.+++++++++|..++..+.....++...+........+ +.+. ......+.|+++|
T Consensus 303 ~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vt 380 (421)
T 3hdi_A 303 GHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHR--SLDEMIEQINAVQ 380 (421)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCC--CHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHcCC
Confidence 77888888888766543 4469999999999999999987788888777766555555 3221 1112347789999
Q ss_pred HHHHHHHhhhccCCCCeEEEEeC-CC
Q 013782 240 GTILEEIVAENFTAPRMVLAASG-VD 264 (436)
Q Consensus 240 ~~~l~~f~~~~~~~~~~~l~ivG-v~ 264 (436)
.+|++++.++++ +++++++++| .+
T Consensus 381 ~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 381 KQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHHHHHHHc-ccCcEEEEECchh
Confidence 999999999999 9999999999 54
No 25
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.93 E-value=0.00052 Score=67.85 Aligned_cols=168 Identities=11% Similarity=-0.007 Sum_probs=111.9
Q ss_pred eCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcc-----cCCCCCHHHHHHHHH-HcCCeeeEe--e----CceeEE
Q 013782 91 TSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-----STKNRSHLRIVREVE-AIGGSILAS--A----SREQMG 158 (436)
Q Consensus 91 ~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-----gt~~~s~~~l~~~l~-~~g~~~~~~--~----~~~~~~ 158 (436)
..+.+...+.+.+++.....+ ......++..++.. |.+......|.+.+. ..|..++++ . ....+.
T Consensus 241 ~~~~~~~~v~~~~~~~~~~~~--~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 241 ENTLPTTHIAIALEGVSWSAP--DYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp CTTCSEEEEEEEEECCCTTCT--THHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred cCCccceEEEEEEecCCCCCc--cHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 334567788888877643332 44555667777742 111122245555555 445433322 2 223455
Q ss_pred EEEEcc--CCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 013782 159 YSFDAL--KTYVPEMVELLVDCV---RNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE 232 (436)
Q Consensus 159 ~~~~~~--~~~l~~~l~ll~~~~---~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 232 (436)
+.+.+. +++++.+++.+.+.+ .+..+++++++++|..+...+.....++...+........+ +.+.. .....
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 396 (443)
T 1hr6_B 319 MYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS--PEEVF 396 (443)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC--HHHHH
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC--HHHHH
Confidence 666676 778998888876654 45569999999999999999987777887766655555433 43332 11234
Q ss_pred hhhcCCCHHHHHHHhhhccCCCCeEEEEeC
Q 013782 233 SALNRLDGTILEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 233 ~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG 262 (436)
+.|.++|.++++++.++++.+++++++++|
T Consensus 397 ~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g 426 (443)
T 1hr6_B 397 EQVDKITKDDIIMWANYRLQNKPVSMVALG 426 (443)
T ss_dssp HHHHTCCHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHhCCHHHHHHHHHHHhccCCcEEEEEC
Confidence 778999999999999999999999999999
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.91 E-value=0.00022 Score=70.14 Aligned_cols=172 Identities=13% Similarity=0.102 Sum_probs=111.2
Q ss_pred EEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCC------CCCHHHHHHHHHHcCCeeeEeeC------c
Q 013782 87 IASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTK------NRSHLRIVREVEAIGGSILASAS------R 154 (436)
Q Consensus 87 v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~------~~s~~~l~~~l~~~g~~~~~~~~------~ 154 (436)
+...+.+.+...+.+.+++.....+ ......++.+++..+.. ..+ ..+.+.+...|..++++.. .
T Consensus 223 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~vl~~iL~~~~~~~~~~~~~~-s~L~~~lRe~gl~y~v~~~~~~~~~~ 299 (431)
T 3cx5_A 223 VRLRDDTLPKAWISLAVEGEPVNSP--NYFVAKLAAQIFGSYNAFEPASRLQG-IKLLDNIQEYQLCDNFNHFSLSYKDS 299 (431)
T ss_dssp EEEECTTSSSEEEEEEEECCCTTCT--THHHHHHHHHHHCEEETTCTTGGGSS-CTHHHHHHTTTCCSEEEEEEEECSSC
T ss_pred EEEcCCCCCceEEEEEeecCCCCCc--cHHHHHHHHHHcCCCccCCCCccccc-cHHHHHHHhcCceeeEeEeecccCCC
Confidence 3333334556777777776554332 44556677777753210 011 2333344334544333322 2
Q ss_pred eeEEEEEEccC-CCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHhhh--hcCChHHHHHHHHHHHhc-CCCCCCC
Q 013782 155 EQMGYSFDALK-TYVPEMVELLVDCV---RNPVFLDWEVNEELRKLKSELGE--LHNNPQGLLLEAIHSTGY-AGALGNP 227 (436)
Q Consensus 155 ~~~~~~~~~~~-~~l~~~l~ll~~~~---~~p~f~~~~~~~~~~~~~~e~~~--~~~~p~~~~~~~l~~~~~-~~~~~~~ 227 (436)
..+.+.+.+.+ ++++.+++.+.+.+ .+ .+++++++++|..+...+.. ...++...+........+ +.+..
T Consensus 300 g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-- 376 (431)
T 3cx5_A 300 GLWGFSTATRNVTMIDDLIHFTLKQWNRLTI-SVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS-- 376 (431)
T ss_dssp EEEEEEEEESCTTCHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC--
T ss_pred ceEEEEEeeCchhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC--
Confidence 33456667777 78888877765443 33 59999999999999999988 778888777766665443 43322
Q ss_pred CCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC-CC
Q 013782 228 LLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VD 264 (436)
Q Consensus 228 ~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~ 264 (436)
.....+.|+++|.+++.++.++++.+++++++++| .+
T Consensus 377 ~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 377 LGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 11234678999999999999999999999999999 53
No 27
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.91 E-value=6.6e-05 Score=73.58 Aligned_cols=162 Identities=13% Similarity=0.007 Sum_probs=111.8
Q ss_pred CCC-CeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeCc------eeEEEEEEcc
Q 013782 92 SVS-PAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR------EQMGYSFDAL 164 (436)
Q Consensus 92 ~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~------~~~~~~~~~~ 164 (436)
.+. +...+.+.+.+....++ ......++.+++..|.. ..|.+.+...|...+++... ..+.+.+.+.
T Consensus 230 ~~~~~q~~~~~~~~~~~~~~~--d~~~l~vl~~iLgg~~~----srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~ 303 (406)
T 3eoq_A 230 YEKARALYLVALFPGVAYQEE--ARFPGQVLAHLLGEEGS----GRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQAD 303 (406)
T ss_dssp CTTCSSEEEEEEEECCCTTCT--THHHHHHHHHHHHCTTT----SHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEEC
T ss_pred cCCccceEEEEEecCCCCCCc--hHHHHHHHHHHhCCCcc----hHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeC
Confidence 344 56667777776554443 34456667777754322 24444444455544443321 3355666777
Q ss_pred CCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcCCCH
Q 013782 165 KTYVPEMVELLVDCVRN---PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLDG 240 (436)
Q Consensus 165 ~~~l~~~l~ll~~~~~~---p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~l~~ 240 (436)
+++.+++++.+.+.+.. -.|++++++++|..++..+....+++...+........+ ..+.. .....+.|+++|.
T Consensus 304 ~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt~ 381 (406)
T 3eoq_A 304 PARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLS--LEEVKARVQRVTS 381 (406)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHCCH
T ss_pred cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhCCH
Confidence 78888888888665544 359999999999999999988888888888777776666 33321 1223477899999
Q ss_pred HHHHHHhhhccCCCCeEEEEeC
Q 013782 241 TILEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 241 ~~l~~f~~~~~~~~~~~l~ivG 262 (436)
+++.++.++++.++++ ++++|
T Consensus 382 ~dv~~~a~~~l~~~~~-~~vvG 402 (406)
T 3eoq_A 382 REVNALLERGFLEKGL-YYLVL 402 (406)
T ss_dssp HHHHHHHHTTTTTSCE-EEEEE
T ss_pred HHHHHHHHHhcCcccE-EEEEC
Confidence 9999999999999998 89998
No 28
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.85 E-value=0.0005 Score=67.50 Aligned_cols=164 Identities=13% Similarity=0.022 Sum_probs=111.3
Q ss_pred CCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHH-cCCeeeEeeC--c----eeEEEEEEccC
Q 013782 93 VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEA-IGGSILASAS--R----EQMGYSFDALK 165 (436)
Q Consensus 93 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~-~g~~~~~~~~--~----~~~~~~~~~~~ 165 (436)
+.+...+.+.+.+.....+ ......++..++..|. ....+.+.+.. .|..+++++. . ..+.+.+.+.+
T Consensus 239 ~~~~~~v~~~~~~~~~~~~--~~~~~~vl~~iLg~~~---~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~ 313 (424)
T 3amj_B 239 PATQAHIAIGMPTLKRGDP--DFFPLVVGNYALGGGG---FESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRA 313 (424)
T ss_dssp SSSEEEEEEEEEEEBTTCT--THHHHHHHHHHHTTSG---GGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEES
T ss_pred CCCccEEEeeccCCCCCCc--chHHHHHHHHHhCCCC---ccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCc
Confidence 4467777777776543322 4455667777764320 12345555543 5555444332 1 34556677777
Q ss_pred CCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCCCHHH
Q 013782 166 TYVPEMVELLVDCVR---NPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTI 242 (436)
Q Consensus 166 ~~l~~~l~ll~~~~~---~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 242 (436)
++.+.+++.+.+.+. +-.++++++++.|..+...+.....++..++........++.+... .....+.|+++|.++
T Consensus 314 ~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~d 392 (424)
T 3amj_B 314 EKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDY-LDHYTERVQAVTVEQ 392 (424)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTT-TTSHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHcCCHHH
Confidence 888888887766554 3458999999999999999887778888777766554444434322 122457899999999
Q ss_pred HHHHhhhccCCCCeEEEEeC
Q 013782 243 LEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 243 l~~f~~~~~~~~~~~l~ivG 262 (436)
+.++.++++.+++++++++|
T Consensus 393 v~~~a~~~l~~~~~~~~~~~ 412 (424)
T 3amj_B 393 VREAFARHVKRENLITVVVG 412 (424)
T ss_dssp HHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHhcCccceEEEEEC
Confidence 99999999999999999999
No 29
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.77 E-value=0.0005 Score=68.16 Aligned_cols=169 Identities=12% Similarity=0.019 Sum_probs=109.6
Q ss_pred eCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhccc-----CCCCCHHHHHHHHHHcCCeeeE--eeC----ceeEEE
Q 013782 91 TSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKS-----TKNRSHLRIVREVEAIGGSILA--SAS----REQMGY 159 (436)
Q Consensus 91 ~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~g-----t~~~s~~~l~~~l~~~g~~~~~--~~~----~~~~~~ 159 (436)
+.+.+...+.+.+.+.....+ ......++.+++..+ .+.-....|.+.+...|+.+++ ... ...+.+
T Consensus 245 ~~~~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~~~i 322 (446)
T 1pp9_A 245 EDGLPLAHVAIAVEGPGWAHP--DNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGA 322 (446)
T ss_dssp ETTSSSEEEEEEEEECCTTCT--HHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEE
T ss_pred cCCccceEEEEEEecCCCCCc--cHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeEEEE
Confidence 334556677777776544333 345566777777421 0001123344444444543333 221 223556
Q ss_pred EEEccCCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhh
Q 013782 160 SFDALKTYVPEMVELLVDCV---RNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESAL 235 (436)
Q Consensus 160 ~~~~~~~~l~~~l~ll~~~~---~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l 235 (436)
.+.+.+++.+++++.+.+.+ .+. +++++++++|..+...+.....+|...+........+ +.+.. .....+.|
T Consensus 323 ~~~~~~~~~~~~~~~i~~~l~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i 399 (446)
T 1pp9_A 323 HFVCDHMSIDDMMFVLQGQWMRLCTS-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP--LAEWESRI 399 (446)
T ss_dssp EEEECTTSHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC--HHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Confidence 66677788888888776544 334 9999999999999999987778888777665555433 43322 11234678
Q ss_pred cCCCHHHHHHHhhhccCCCCeEEEEeC-CC
Q 013782 236 NRLDGTILEEIVAENFTAPRMVLAASG-VD 264 (436)
Q Consensus 236 ~~l~~~~l~~f~~~~~~~~~~~l~ivG-v~ 264 (436)
.++|.++++++.++++.+++++++++| .+
T Consensus 400 ~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 400 AEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 999999999999999999999999999 53
No 30
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.70 E-value=0.0017 Score=64.92 Aligned_cols=167 Identities=15% Similarity=0.052 Sum_probs=110.6
Q ss_pred CCCeEEEEEEEeccccCCCCCCCchHHHHHHhhccc-------CCCCCHHHHHHHH-HHcCCeeeEee------CceeEE
Q 013782 93 VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKS-------TKNRSHLRIVREV-EAIGGSILASA------SREQMG 158 (436)
Q Consensus 93 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~g-------t~~~s~~~l~~~l-~~~g~~~~~~~------~~~~~~ 158 (436)
+.+...+.+.+.+.....+ ......++..++..| .++--...+.+.+ +..|...++.. ....+.
T Consensus 240 ~~~~~~v~~~~~~~~~~~~--d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~ 317 (475)
T 1hr6_A 240 LPELFHIQIGFEGLPIDHP--DIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFG 317 (475)
T ss_dssp SCCCEEEEEEEECCCTTCT--THHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCCCCCc--cHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEE
Confidence 3456777777775443332 344456677777432 1111123455555 33455443332 123456
Q ss_pred EEEEccCCCHHHHHHHHHHhhhC------CCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 013782 159 YSFDALKTYVPEMVELLVDCVRN------PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAP 231 (436)
Q Consensus 159 ~~~~~~~~~l~~~l~ll~~~~~~------p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 231 (436)
+.+.+.+++++.+++.+...+.. -.|++++|+++|..++..+.....++...+........+ +.+.. ....
T Consensus 318 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~ 395 (475)
T 1hr6_A 318 ISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP--VNEM 395 (475)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC--HHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC--HHHH
Confidence 67777778899988888765554 249999999999999999987778888777666665543 43331 1123
Q ss_pred hhhhcCCCHHHHHHHhhhccCC---------CCeEEEEeC-C
Q 013782 232 ESALNRLDGTILEEIVAENFTA---------PRMVLAASG-V 263 (436)
Q Consensus 232 ~~~l~~l~~~~l~~f~~~~~~~---------~~~~l~ivG-v 263 (436)
.+.|+++|.+++.++.++++.+ .+++++++| .
T Consensus 396 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 396 ISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 4678999999999999999988 589999999 5
No 31
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.65 E-value=0.00011 Score=72.47 Aligned_cols=163 Identities=13% Similarity=0.065 Sum_probs=106.5
Q ss_pred CCCeEEEEEEEeccccCCCCCCCchHHHHHHhhccc-CCCCCHHHHHHHHHH-cCCee--eEeeC----ceeEEEEEEcc
Q 013782 93 VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKS-TKNRSHLRIVREVEA-IGGSI--LASAS----REQMGYSFDAL 164 (436)
Q Consensus 93 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~g-t~~~s~~~l~~~l~~-~g~~~--~~~~~----~~~~~~~~~~~ 164 (436)
+.....+.+.+.+.....+ ......++..++..| .. ..+.+.+.. .|..+ ++... ...+.+.+.+.
T Consensus 246 ~~~~~~v~~~~~~~~~~~~--d~~~l~vl~~iLg~~~~~----s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~ 319 (434)
T 3gwb_A 246 PSSQTSLMLAQLGIDRDDP--DYAAVSLGNQILGGGGFG----TRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTR 319 (434)
T ss_dssp CSSEEEEEEEEECCBTTCT--THHHHHHHHHHHHSSSSC----SHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEE
T ss_pred CCCceeEEecCcCCCCCCc--chHHHHHHHHHhCCCccc----chhHHHHHhhcCCcceeeeecccCCCceeEEEEEecc
Confidence 3456667776766554333 345566677776433 22 234444433 24433 33322 13455677777
Q ss_pred CCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCCCHH
Q 013782 165 KTYVPEMVELLVDCVRN---PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGT 241 (436)
Q Consensus 165 ~~~l~~~l~ll~~~~~~---p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 241 (436)
+++.+.+++.+.+.+.. -.+++++++++|..++..+.....++...+........++.+... .....+.|+++|.+
T Consensus 320 ~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~ 398 (434)
T 3gwb_A 320 AEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSY-LEDFMRQSQELTVE 398 (434)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTH-HHHHHHHHHHCCHH
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHhCCHH
Confidence 78888888877665543 358999999999999999888778888888777665544332211 11234778999999
Q ss_pred HHHHHhhhccCCCCeEEEEeC
Q 013782 242 ILEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 242 ~l~~f~~~~~~~~~~~l~ivG 262 (436)
+++++.++++.+++++++++|
T Consensus 399 dv~~~a~~~l~~~~~~~~vvg 419 (434)
T 3gwb_A 399 QVKAAMNKHLNVDKMVIVSAG 419 (434)
T ss_dssp HHHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHHhcChhhEEEEEEc
Confidence 999999999999999999999
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.49 E-value=0.0026 Score=62.54 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=108.1
Q ss_pred CCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccC----CCCCHHHHHHHHH-HcCCeeeEeeC------ceeEEEEE
Q 013782 93 VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKST----KNRSHLRIVREVE-AIGGSILASAS------REQMGYSF 161 (436)
Q Consensus 93 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt----~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~~~~ 161 (436)
+.+...+.+.+.+.....+ ......++.+++..|. +.--...+.+.+. ..|..+++++. ...+.+.+
T Consensus 249 ~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~ 326 (439)
T 1pp9_B 249 GDSLVHAALVAESAAIGSA--EANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYT 326 (439)
T ss_dssp CCSEEEEEEEEECCCTTSH--HHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEE
T ss_pred CccceEEEEEecCCCCCch--HHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEE
Confidence 4567777777776543322 3345566777764321 0001234555554 44544333332 22344666
Q ss_pred EccCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcC
Q 013782 162 DALKTYVPEMVELLVDCVR---NPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESALNR 237 (436)
Q Consensus 162 ~~~~~~l~~~l~ll~~~~~---~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~ 237 (436)
.+.+++++.+++.+.+.+. +-.+++++++++|..+...+.....++...+........+ +.+. . .....+.|++
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~ 404 (439)
T 1pp9_B 327 ISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYT-P-PSTVLQQIDA 404 (439)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCC-C-HHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCC-C-HHHHHHHHhc
Confidence 6677788888887766554 3469999999999999999987778888777766665554 3332 1 1223467899
Q ss_pred CCHHHHHHHhhhccCCCCeEEEEeC
Q 013782 238 LDGTILEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 238 l~~~~l~~f~~~~~~~~~~~l~ivG 262 (436)
+|.++++++.++++. ++++++++|
T Consensus 405 vt~~dv~~~a~~~~~-~~~~~~v~g 428 (439)
T 1pp9_B 405 VADADVINAAKKFVS-GRKSMAASG 428 (439)
T ss_dssp CCHHHHHHHHHHHHH-SCEEEEEEE
T ss_pred CCHHHHHHHHHHHhc-CCceEEEEC
Confidence 999999999999988 899999999
No 33
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.38 E-value=0.00053 Score=67.94 Aligned_cols=162 Identities=11% Similarity=-0.012 Sum_probs=103.1
Q ss_pred CeEEEEEEEeccc---cCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHH-HHcCCeeeEee--C---ce---eEEEEEE
Q 013782 95 PAASIGLYLDFGS---VYETPSSCGASNLLEKMAFKSTKNRSHLRIVREV-EAIGGSILASA--S---RE---QMGYSFD 162 (436)
Q Consensus 95 ~~~~i~l~~~~Gs---~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l-~~~g~~~~~~~--~---~~---~~~~~~~ 162 (436)
+...+.+.+.++. ..+. ...-...++..++..|. ...|.+.+ +..|..++++. . ++ .+.+++.
T Consensus 243 ~~~~v~l~~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~----~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~ 317 (445)
T 3ami_A 243 ELPYLALAWHVPAIVDLDKS-RDAYALEILAAVLDGYD----GARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGV 317 (445)
T ss_dssp SSCEEEEEEEECCCSSTTCC-HHHHHHHHHHHHHHSST----TCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEE
T ss_pred CccEEEEEEEcCCcccccCC-hhHHHHHHHHHHHcCCc----chHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEE
Confidence 3344555566554 2212 12334556666664432 23455544 34555444432 2 22 3345555
Q ss_pred ccCC-CHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCC
Q 013782 163 ALKT-YVPEMVELLVDCVRN---PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRL 238 (436)
Q Consensus 163 ~~~~-~l~~~l~ll~~~~~~---p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 238 (436)
+.++ +.+.+++.+.+.+.. -.+++++++++|..++..+.....++..++........++.+... .....+.|+++
T Consensus 318 ~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~i~~v 396 (445)
T 3ami_A 318 PSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRD-DDRFYQQLRSV 396 (445)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTH-HHHHHHHHHTC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHH-HHHHHHHHHcC
Confidence 6555 488888877655443 348999999999999999987778887777666655544322211 11234678999
Q ss_pred CHHHHHHHhhhccCCCCeEEEEeC
Q 013782 239 DGTILEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 239 ~~~~l~~f~~~~~~~~~~~l~ivG 262 (436)
|.+++.++.++++.+++++++++|
T Consensus 397 t~~dv~~~a~~~l~~~~~~~~~~~ 420 (445)
T 3ami_A 397 TAAEVKAAAARLLTDDTLTVANLV 420 (445)
T ss_dssp CHHHHHHHHHTTSCSTTEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCCeEEEEEc
Confidence 999999999999999999999999
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=96.98 E-value=0.0035 Score=61.24 Aligned_cols=162 Identities=13% Similarity=0.037 Sum_probs=103.1
Q ss_pred CCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHH-HcCCeeeEee--C--ceeEEEEEEccCC
Q 013782 92 SVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVE-AIGGSILASA--S--REQMGYSFDALKT 166 (436)
Q Consensus 92 ~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~~~~~~--~--~~~~~~~~~~~~~ 166 (436)
.+.+...+.+.+.++..... .......++.+++..|. ...+.+.+. ..|..++++. . ...+.+.+.+.++
T Consensus 250 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~----~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~ 324 (425)
T 3d3y_A 250 EVLAQSKLNLAYNTDIYYGD-SYYFALQVFNGIFGGFP----HSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGK 324 (425)
T ss_dssp EECSSEEEEEEEECCCCTTS-TTHHHHHHHHHHHTTST----TSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGG
T ss_pred CCccccEEEEEeecCCCCCC-chHHHHHHHHHHhCCCh----hhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHh
Confidence 34556667777776532222 24556677777774332 234555554 3354443332 2 2345566666778
Q ss_pred CHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcCCCHHH
Q 013782 167 YVPEMVELLVDCVR---NPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLDGTI 242 (436)
Q Consensus 167 ~l~~~l~ll~~~~~---~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~ 242 (436)
+++.+++.+.+.+. +-.++++++++.|..+...+.....++...+........+ +.+. ......+.|+++|.++
T Consensus 325 ~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~i~~vt~ed 402 (425)
T 3d3y_A 325 NRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTML--TAEEWIARINAVTIPE 402 (425)
T ss_dssp GHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCC--CHHHHHHHHHHCCHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHhCCHHH
Confidence 88888887765443 3459999999999999999988778888777766665554 3322 1122346789999999
Q ss_pred HHHHhhhccCCCCeEEEEeC
Q 013782 243 LEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 243 l~~f~~~~~~~~~~~l~ivG 262 (436)
++++.++++ +++ .++++|
T Consensus 403 v~~~a~~~~-~~~-~~~v~g 420 (425)
T 3d3y_A 403 IQEVAKRLE-LQA-IFFLEG 420 (425)
T ss_dssp HHHHHHHCE-EEE-EEEEEE
T ss_pred HHHHHHhcc-Cce-EEEEeC
Confidence 999999865 444 445555
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.50 E-value=0.037 Score=55.47 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=95.0
Q ss_pred eCCCCeEEEEEEEeccccCCCCCCCch-----HHHHHHhhcccCCCCCHHHHHHHHHH---cCCeeeEe----eCceeEE
Q 013782 91 TSVSPAASIGLYLDFGSVYETPSSCGA-----SNLLEKMAFKSTKNRSHLRIVREVEA---IGGSILAS----ASREQMG 158 (436)
Q Consensus 91 ~~~~~~~~i~l~~~~Gs~~e~~~~~g~-----a~ll~~l~~~gt~~~s~~~l~~~l~~---~g~~~~~~----~~~~~~~ 158 (436)
+.+.+...+.+.+++.....++ ...+ ..++..+++ ..+...+.. .|...+.+ ..++...
T Consensus 261 ~~~~~q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg--------~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~ 331 (492)
T 3go9_A 261 NEQAAQDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALF--------WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCA 331 (492)
T ss_dssp ESSCSSEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHSCCTTCEEEEEEEEETTEEEEE
T ss_pred cCCCCCcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccccccccCchhhhhhcceE
Confidence 3445566666666666544332 1111 245555553 133333333 34433333 2345556
Q ss_pred EEEEccCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHhhhhc-----CChHHHHHHHHHHHhcCCCCCCCCC-
Q 013782 159 YSFDALKTYVPEMVELLVDCVRN---PVFLDWEVNEELRKLKSELGELH-----NNPQGLLLEAIHSTGYAGALGNPLL- 229 (436)
Q Consensus 159 ~~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~~~~~~~e~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~~~- 229 (436)
+.+.+..++.+++++.+.+.+.. -.|+++|+++.|..++..+.... .++...+.+.+........++.+..
T Consensus 332 ~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (492)
T 3go9_A 332 IHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQY 411 (492)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHH
T ss_pred EEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHH
Confidence 77788888888888877655443 45999999999999988876432 3344445554443433333322210
Q ss_pred -CC-hhhhcCCCHHHHHHHhhhccCCCCeEEEEeC
Q 013782 230 -AP-ESALNRLDGTILEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 230 -~~-~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG 262 (436)
.. .+.|.++|.+++.++.++++.+++. ++++|
T Consensus 412 ~~~~~~~i~~vT~edV~~~a~~~l~~~~~-~vvvg 445 (492)
T 3go9_A 412 QKLRQAFLSGLTLAELNRELKQQLSQDTT-LVLMQ 445 (492)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCE-EEEEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCCCCe-EEEEc
Confidence 01 1448899999999999999997544 45555
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=88.09 E-value=7 Score=36.32 Aligned_cols=111 Identities=9% Similarity=-0.049 Sum_probs=70.5
Q ss_pred CCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEE
Q 013782 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (436)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i 382 (436)
.+...+.+.+.+.. ..+.......++..+|..|.. .-| ...+. +..+..|..++++.. .-...+
T Consensus 10 ~~~v~~~~~~~~Gs--~~e~~~G~ah~leh~lf~Gt~---~~~----~~~l~-~~l~~~G~~~na~t~------~~~t~~ 73 (352)
T 3cx5_B 10 TKISTLAVKVHGGS--RYATKDGVAHLLNRFNFQNTN---TRS----ALKLV-RESELLGGTFKSTLD------REYITL 73 (352)
T ss_dssp CSEEEEEEEESCSG--GGCSSTTHHHHHHHHTTSCBS---SSC----HHHHH-HHHHHHTCEEEEEEC------SSCEEE
T ss_pred CceEEEEEEEeeec--cCCCcccHHHHHHHHhccCcC---CCC----HHHHH-HHHHHhCCeEEEEEc------cceEEE
Confidence 45555556665543 445567778888888864311 001 12343 344566766555443 225566
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHHHHHhccC
Q 013782 383 YACTGSDFVSKAVDLVVRELILIATPKQVTQVQLN-RAKEATKSAVLMNLES 433 (436)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~-~aK~~l~~~l~~~les 433 (436)
++.+.++++.++++.+.+.+..- .+++++|+ +.|..++..+.+..++
T Consensus 74 ~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~~~k~~v~~e~~~~~~~ 121 (352)
T 3cx5_B 74 KATFLKDDLPYYVNALADVLYKT----AFKPHELTESVLPAARYDYAVAEQC 121 (352)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHTHHHHHHHHHHHHHTC
T ss_pred EEEechhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 77788888888888887766553 39999998 9999999888865444
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=29.64 E-value=79 Score=18.95 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHH
Q 013782 396 DLVVRELILIATPKQVTQVQLNRAK 420 (436)
Q Consensus 396 ~~~~~~l~~l~~~g~~~~~el~~aK 420 (436)
..+..++..+.++| ++++|+....
T Consensus 3 aalkselqalkkeg-fspeelaale 26 (48)
T 1g6u_A 3 AALKSELQALKKEG-FSPEELAALE 26 (48)
T ss_dssp HHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 34567888888888 9999986543
No 38
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=27.32 E-value=32 Score=25.87 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=38.5
Q ss_pred HhcCCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC
Q 013782 218 TGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG 262 (436)
..|++++-+.+++..+.|+..+.++...=..+.|.+..+++.+.|
T Consensus 60 l~Y~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~ 104 (120)
T 2l4w_A 60 LSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 104 (120)
T ss_dssp EEECCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECS
T ss_pred eeecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 345778888888899999999999888888888889999999988
No 39
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=24.52 E-value=25 Score=24.95 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=38.1
Q ss_pred HhcCCCCCCCCCCChhhhcCCCHHHHHHHhhhccCCCCeEEEEeC
Q 013782 218 TGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG 262 (436)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivG 262 (436)
..|++++-+.+++..+.|+..+.++...=..+.|....+++.+.|
T Consensus 30 l~Y~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~ 74 (85)
T 3ov5_A 30 LSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 74 (85)
T ss_dssp EEECSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEET
T ss_pred eEecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 345777777888888999999999888888888889999999988
No 40
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=21.38 E-value=81 Score=23.89 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=18.2
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHH
Q 013782 400 RELILIATPKQVTQVQLNRAKEATK 424 (436)
Q Consensus 400 ~~l~~l~~~g~~~~~el~~aK~~l~ 424 (436)
..|++++..+++|++||+..|.-+.
T Consensus 10 q~LW~lA~~~NFT~~ELeSlK~EL~ 34 (109)
T 2fcw_A 10 IDLWDLAQSANLTDKELEAFREELK 34 (109)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3455666556799999999887653
Done!