Your job contains 1 sequence.
>013789
MIRGMVKFAGSSLISSFTPFDSVLLKKHRRFSVNSFFKNSNNPRSLSTCTQNIILHTKAE
MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF
SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK
FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN
GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY
QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF
HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL
LPPPYKAREQEVLYAY
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013789
(436 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2087408 - symbol:AT3G63510 species:3702 "Arabi... 1580 2.7e-162 1
TAIR|locus:2152758 - symbol:AT5G47970 species:3702 "Arabi... 1485 3.2e-152 1
UNIPROTKB|P32695 - symbol:dusA "tRNA-dihydrouridine synth... 610 1.7e-59 1
UNIPROTKB|Q9KUX9 - symbol:dusA "tRNA-dihydrouridine synth... 606 4.5e-59 1
TIGR_CMR|VC_0379 - symbol:VC_0379 "TIM-barrel protein, yj... 606 4.5e-59 1
UNIPROTKB|Q8EAJ0 - symbol:dusA "tRNA-dihydrouridine synth... 603 9.3e-59 1
TIGR_CMR|SO_3912 - symbol:SO_3912 "TIM-barrel protein, yj... 603 9.3e-59 1
GENEDB_PFALCIPARUM|PFI0920c - symbol:PFI0920c "Dihydrouri... 520 2.3e-58 2
UNIPROTKB|Q8I2W5 - symbol:PFI0920c "Dihydrouridine syntha... 520 2.3e-58 2
UNIPROTKB|Q607T6 - symbol:MCA1669 "tRNA-dihydrouridine sy... 597 4.0e-58 1
UNIPROTKB|Q48A03 - symbol:CPS_0353 "tRNA-dihydrouridine s... 586 5.9e-57 1
TIGR_CMR|CPS_0353 - symbol:CPS_0353 "TIM-barrel protein, ... 586 5.9e-57 1
UNIPROTKB|Q0C5H0 - symbol:dusA "tRNA-dihydrouridine synth... 567 6.1e-55 1
UNIPROTKB|Q884G7 - symbol:dusA "tRNA-dihydrouridine synth... 564 1.3e-54 1
TIGR_CMR|SPO_2374 - symbol:SPO_2374 "tRNA-dihydrouridine ... 562 2.1e-54 1
UNIPROTKB|Q83D40 - symbol:CBU_0904 "tRNA-dihydrouridine s... 556 8.9e-54 1
TIGR_CMR|CBU_0904 - symbol:CBU_0904 "TIM-barrel protein, ... 556 8.9e-54 1
DICTYBASE|DDB_G0277081 - symbol:DDB_G0277081 "tRNA-dihydr... 234 2.8e-17 1
UNIPROTKB|O53835 - symbol:dus "Probable tRNA-dihydrouridi... 215 4.7e-15 1
UNIPROTKB|Q87VS1 - symbol:dusB "tRNA-dihydrouridine synth... 203 6.2e-14 1
UNIPROTKB|Q81ZD5 - symbol:BAS0319 "tRNA-dihydrouridine sy... 196 3.7e-13 1
TIGR_CMR|BA_0334 - symbol:BA_0334 "conserved hypothetical... 196 3.7e-13 1
TIGR_CMR|SPO_2089 - symbol:SPO_2089 "tRNA-dihydrouridine ... 195 4.7e-13 1
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s... 193 7.5e-13 1
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ... 193 7.5e-13 1
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy... 190 1.9e-12 1
TIGR_CMR|GSU_1005 - symbol:GSU_1005 "dihydrouridine synth... 188 3.1e-12 1
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr... 185 6.1e-12 1
TIGR_CMR|NSE_0373 - symbol:NSE_0373 "putative tRNA-dihydr... 179 3.8e-11 1
TIGR_CMR|CJE_0118 - symbol:CJE_0118 "tRNA-dihydrouridine ... 175 8.2e-11 1
UNIPROTKB|Q8EJR8 - symbol:dusB "tRNA-dihydrouridine synth... 172 2.2e-10 1
TIGR_CMR|SO_0394 - symbol:SO_0394 "conserved hypothetical... 172 2.2e-10 1
DICTYBASE|DDB_G0291360 - symbol:dus4l "tRNA-dihydrouridin... 168 7.9e-10 1
ZFIN|ZDB-GENE-040801-233 - symbol:dus4l "dihydrouridine s... 163 2.1e-09 1
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy... 139 2.9e-09 2
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu... 139 2.9e-09 2
UNIPROTKB|E1C6D2 - symbol:DUS1L "Uncharacterized protein"... 164 4.7e-09 1
UNIPROTKB|E1BWI8 - symbol:DUS1L "Uncharacterized protein"... 164 4.9e-09 1
TIGR_CMR|ECH_0758 - symbol:ECH_0758 "putative tRNA-dihydr... 159 6.6e-09 1
CGD|CAL0003746 - symbol:orf19.966 species:5476 "Candida a... 159 8.0e-09 1
UNIPROTKB|O95620 - symbol:DUS4L "tRNA-dihydrouridine(20a/... 155 1.9e-08 1
TAIR|locus:2155528 - symbol:AT5G67220 species:3702 "Arabi... 156 2.9e-08 1
UNIPROTKB|Q9KV66 - symbol:dusB "tRNA-dihydrouridine synth... 153 3.3e-08 1
TIGR_CMR|VC_0291 - symbol:VC_0291 "NifR3/Smm1 family prot... 153 3.3e-08 1
UNIPROTKB|E1BH75 - symbol:DUS1L "Uncharacterized protein"... 150 4.1e-08 1
UNIPROTKB|J3QLE4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 150 6.5e-08 1
UNIPROTKB|P0ABT5 - symbol:dusB "tRNA-dihydrouridine synth... 149 9.5e-08 1
UNIPROTKB|Q6P1R4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 150 1.7e-07 1
SGD|S000004545 - symbol:DUS1 "Dihydrouridine synthase" sp... 149 1.8e-07 1
UNIPROTKB|F1NHN2 - symbol:DUS4L "tRNA-dihydrouridine synt... 145 2.4e-07 1
UNIPROTKB|J3QQZ0 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 144 2.9e-07 1
UNIPROTKB|Q489F6 - symbol:CPS_0550 "tRNA-dihydrouridine s... 145 3.1e-07 1
TIGR_CMR|CPS_0550 - symbol:CPS_0550 "NifR3/Smm1 family pr... 145 3.1e-07 1
UNIPROTKB|D4A0T1 - symbol:Dus4l "Protein Dus4l" species:1... 144 3.5e-07 1
RGD|1311445 - symbol:Dus4l "dihydrouridine synthase 4-lik... 144 3.6e-07 1
FB|FBgn0031238 - symbol:CG3645 species:7227 "Drosophila m... 147 4.0e-07 1
WB|WBGene00016674 - symbol:C45G9.2 species:6239 "Caenorha... 142 4.2e-07 1
MGI|MGI:1919166 - symbol:Dus4l "dihydrouridine synthase 4... 143 4.6e-07 1
UNIPROTKB|E2RRJ8 - symbol:DUS4L "Uncharacterized protein"... 142 5.7e-07 1
ZFIN|ZDB-GENE-030131-1435 - symbol:dus1l "dihydrouridine ... 145 6.8e-07 1
POMBASE|SPBC36B7.04 - symbol:SPBC36B7.04 "tRNA dihydrouri... 142 9.4e-07 1
UNIPROTKB|E2R9L8 - symbol:DUS1L "Uncharacterized protein"... 142 1.3e-06 1
UNIPROTKB|J9NYR0 - symbol:DUS1L "Uncharacterized protein"... 142 1.8e-06 1
CGD|CAL0004455 - symbol:orf19.1404 species:5476 "Candida ... 139 2.7e-06 1
FB|FBgn0032750 - symbol:CG10495 species:7227 "Drosophila ... 137 3.4e-06 1
RGD|708389 - symbol:Pp3111 "PP3111 protein" species:10116... 137 4.0e-06 1
MGI|MGI:1915980 - symbol:Dus1l "dihydrouridine synthase 1... 137 4.6e-06 1
SGD|S000004397 - symbol:DUS4 "Dihydrouridine synthase" sp... 133 8.1e-06 1
UNIPROTKB|J3QQL9 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 111 1.0e-05 1
DICTYBASE|DDB_G0278803 - symbol:dus1l "tRNA-dihydrouridin... 132 1.4e-05 1
UNIPROTKB|G3N340 - symbol:DUS1L "Uncharacterized protein"... 132 1.7e-05 1
UNIPROTKB|J3QKP9 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 111 2.1e-05 2
UNIPROTKB|A6QPA8 - symbol:DUS4L "DUS4L protein" species:9... 124 2.8e-05 1
UNIPROTKB|P33371 - symbol:dusC "tRNA-dihydrouridine synth... 125 4.6e-05 1
UNIPROTKB|I3LP14 - symbol:DUS4L "Uncharacterized protein"... 118 0.00014 1
UNIPROTKB|P54322 - symbol:pyrDB "Dihydroorotate dehydroge... 119 0.00021 1
POMBASE|SPCC777.15 - symbol:SPCC777.15 "tRNA dihydrouridi... 118 0.00030 1
POMBASE|SPAC16.04 - symbol:dus3 "tRNA dihydrouridine synt... 122 0.00030 1
DICTYBASE|DDB_G0292686 - symbol:dus3l "tRNA-dihydrouridin... 122 0.00034 1
WB|WBGene00009452 - symbol:F36A2.2 species:6239 "Caenorha... 120 0.00040 1
UNIPROTKB|Q884C6 - symbol:dusC "tRNA-dihydrouridine synth... 116 0.00048 1
CGD|CAL0005565 - symbol:orf19.1565 species:5476 "Candida ... 120 0.00050 1
UNIPROTKB|Q5ALL3 - symbol:DUS3 "tRNA-dihydrouridine(47) s... 120 0.00050 1
UNIPROTKB|F1NGP4 - symbol:DUS3L "Uncharacterized protein"... 120 0.00052 1
UNIPROTKB|Q9KT00 - symbol:dusC "tRNA-dihydrouridine synth... 114 0.00083 1
TIGR_CMR|VC_1105 - symbol:VC_1105 "conserved hypothetical... 114 0.00083 1
>TAIR|locus:2087408 [details] [associations]
symbol:AT3G63510 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016556 "mRNA modification" evidence=RCA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.20.20.70
GO:GO:0050660 UniGene:At.43820 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 EMBL:BT000879
IPI:IPI00546722 RefSeq:NP_567149.2 ProteinModelPortal:Q8H128
SMR:Q8H128 EnsemblPlants:AT3G63510.1 GeneID:825526
KEGG:ath:AT3G63510 TAIR:At3g63510 InParanoid:Q8H128 OMA:SPTRHFI
PhylomeDB:Q8H128 ProtClustDB:CLSN2686569 ArrayExpress:Q8H128
Genevestigator:Q8H128 Uniprot:Q8H128
Length = 419
Score = 1580 (561.2 bits), Expect = 2.7e-162, P = 2.7e-162
Identities = 287/371 (77%), Positives = 337/371 (90%)
Query: 66 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 125
YLPP FSVAPMMDWTDNHYRTLARLI+KHAWLYTEM+AAET+++QQ NLDRFLAFSP+QH
Sbjct: 49 YLPPSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQH 108
Query: 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185
PIVLQ+GGSN++NLAKA +L++AY YDEINLNCGCPSPKVAGHGCFGVSLML PK VGEA
Sbjct: 109 PIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEA 168
Query: 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
MS IAANTNVPV+VKCRIGVD+HDSY++LCDFIYKVS+LSPTRHFI+HSRKALL GISPA
Sbjct: 169 MSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPA 228
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305
+NR IPPLKYEYYYAL+RDFPDL FT+NGGI +V +VNAAL++GAH VMVGRAAY NPW
Sbjct: 229 DNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQ 288
Query: 306 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 365
TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD++LGT+GN RP+VRD++KPLL+ FHSE G
Sbjct: 289 TLGQVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENG 348
Query: 366 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPR-GREDLFADVHDLLPPP 424
N L+KR+ADAAF+ C++V S LEE++ AIPD VLDSPI +P G ED+FADVH++LPPP
Sbjct: 349 NSLWKRRADAAFKECRSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPP 408
Query: 425 YKAREQEVLYA 435
Y+A E+ +L A
Sbjct: 409 YEAGEEIILCA 419
>TAIR|locus:2152758 [details] [associations]
symbol:AT5G47970 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0009524 EMBL:AB017064
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000259834 KO:K05539 EMBL:AB024025
ProtClustDB:CLSN2686569 EMBL:AY072094 EMBL:AY096579 IPI:IPI00520234
RefSeq:NP_001078731.1 RefSeq:NP_199608.1 UniGene:At.66758
ProteinModelPortal:Q9FI41 SMR:Q9FI41 EnsemblPlants:AT5G47970.1
EnsemblPlants:AT5G47970.2 GeneID:834848 KEGG:ath:AT5G47970
TAIR:At5g47970 InParanoid:Q9FI41 OMA:KATRLAN PhylomeDB:Q9FI41
ArrayExpress:Q9FI41 Genevestigator:Q9FI41 Uniprot:Q9FI41
Length = 387
Score = 1485 (527.8 bits), Expect = 3.2e-152, P = 3.2e-152
Identities = 269/372 (72%), Positives = 318/372 (85%)
Query: 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 121
V+ Y PP FS+APMM WTDNHYRTLARLI+KHAWLYTEMLAAETI+YQ+ NLD FLAFS
Sbjct: 3 VSEAYSPPLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFS 62
Query: 122 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 181
P+QHPIVLQIGG NL+NLAKAT LANAY YDEIN NCGCPSPKV+G GCFG LMLDPKF
Sbjct: 63 PDQHPIVLQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKF 122
Query: 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 241
VGEAMSVIAANTN V+VKCRIGVDDHDSYN+LCDFI+ VSSLSPT+HFIIHSRKALL+G
Sbjct: 123 VGEAMSVIAANTNAAVTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSG 182
Query: 242 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301
+SP++NR IPPLKYE+++ALLRDFPDL FT+NGGIN+V E +AALR GAH VM+GRA Y
Sbjct: 183 LSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYY 242
Query: 302 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 361
NPW+ LGHVDT +YG+PSSG+TRRQV+EKY++YG+++LG YG RP++RD+++PL++ FH
Sbjct: 243 NPWHILGHVDTVVYGSPSSGITRRQVLEKYKLYGESVLGKYGKGRPNLRDIVRPLINLFH 302
Query: 362 SEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLL 421
SE GNG +KR+ DAA C T++SFL+E + AIPD VLDS + GREDLFADV LL
Sbjct: 303 SESGNGQWKRRTDAALLHCTTLQSFLDEVLPAIPDYVLDSSAVKEATGREDLFADVQRLL 362
Query: 422 PPPYKAREQEVL 433
PPPY+ + L
Sbjct: 363 PPPYEKESFKAL 374
>UNIPROTKB|P32695 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U00006 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 RefSeq:NP_418473.2 RefSeq:YP_492192.1
ProteinModelPortal:P32695 SMR:P32695 PRIDE:P32695
EnsemblBacteria:EBESCT00000004365 EnsemblBacteria:EBESCT00000018223
GeneID:12930614 GeneID:948558 KEGG:ecj:Y75_p3936 KEGG:eco:b4049
PATRIC:32123637 EchoBASE:EB1876 EcoGene:EG11932
HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815
BioCyc:EcoCyc:EG11932-MONOMER BioCyc:ECOL316407:JW5950-MONOMER
BioCyc:MetaCyc:EG11932-MONOMER Genevestigator:P32695
TIGRFAMs:TIGR00742 Uniprot:P32695
Length = 330
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 136/301 (45%), Positives = 182/301 (60%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPGI-LAAV 246
Query: 311 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 370
D I+G+ + VV Y + L + G H+ + +L F PG ++
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIEREL-SQGTYLGHIT---RHMLGLFQGIPGARQWR 302
Query: 371 R 371
R
Sbjct: 303 R 303
>UNIPROTKB|Q9KUX9 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 135/324 (41%), Positives = 185/324 (57%)
Query: 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 8 SVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQF 64
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A
Sbjct: 65 GGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRA 123
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IP
Sbjct: 124 VVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIP 183
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311
PL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD
Sbjct: 184 PLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVD 241
Query: 312 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 371
I+G + R QV+ + Y + L + G H+ + + +L F + PG ++R
Sbjct: 242 QQIFGLETPVKKRSQVIHEMMPYIEREL-SQGT---HLGHMTRHMLGLFQNMPGARQWRR 297
Query: 372 KADAAFQTCKTVKSFLEETIVAIP 395
+E+ + IP
Sbjct: 298 HISENAHKPGAGLEVVEQALAKIP 321
>TIGR_CMR|VC_0379 [details] [associations]
symbol:VC_0379 "TIM-barrel protein, yjbN family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 135/324 (41%), Positives = 185/324 (57%)
Query: 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 8 SVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQF 64
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A
Sbjct: 65 GGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRA 123
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IP
Sbjct: 124 VVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIP 183
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311
PL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD
Sbjct: 184 PLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVD 241
Query: 312 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 371
I+G + R QV+ + Y + L + G H+ + + +L F + PG ++R
Sbjct: 242 QQIFGLETPVKKRSQVIHEMMPYIEREL-SQGT---HLGHMTRHMLGLFQNMPGARQWRR 297
Query: 372 KADAAFQTCKTVKSFLEETIVAIP 395
+E+ + IP
Sbjct: 298 HISENAHKPGAGLEVVEQALAKIP 321
>UNIPROTKB|Q8EAJ0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004653 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 128/301 (42%), Positives = 183/301 (60%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREI 190
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 311 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 370
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 249 DQVLCGSTKAVMSREAVIEAMLPYIEAHLQVGGR----LNHITRHMIGLFQGLPGARAWR 304
Query: 371 R 371
R
Sbjct: 305 R 305
>TIGR_CMR|SO_3912 [details] [associations]
symbol:SO_3912 "TIM-barrel protein, yjbN family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 128/301 (42%), Positives = 183/301 (60%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREI 190
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 311 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 370
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 249 DQVLCGSTKAVMSREAVIEAMLPYIEAHLQVGGR----LNHITRHMIGLFQGLPGARAWR 304
Query: 371 R 371
R
Sbjct: 305 R 305
>GENEDB_PFALCIPARUM|PFI0920c [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 520 (188.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 101/218 (46%), Positives = 142/218 (65%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 128
P+ VAPM++ T+ H+R + R+I+K A L+TEM+ T++Y NL+ L F +HPIV
Sbjct: 198 PFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIV 257
Query: 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
Q+GG +++++++A L YDEIN+N GCPS KVA G FG SLM +P+ V +
Sbjct: 258 CQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYE 317
Query: 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248
I +PV+VK R GVD++DS++ L FI VSS+ HFI+H+RKA L G+ P +NR
Sbjct: 318 IKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVG-CNHFIVHARKAWLKGLDPKQNR 376
Query: 249 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286
IPPL+Y Y L + +P L FTLNGGI T+ E A L
Sbjct: 377 KIPPLEYYKVYDLCKLYPHLKFTLNGGIQTIQEAIALL 414
Score = 97 (39.2 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 32/121 (26%), Positives = 54/121 (44%)
Query: 293 VMVGRAAYQNPWYTLGHVDTAIYGA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR 350
+M+GRA +N L D +Y PS+ +RR ++E Y+ Y + Y N
Sbjct: 449 IMIGRACMENIT-VLSQTDKLVYNQDIPSTAYSRRTILEAYKKYLEKNSLFY--NLSSSF 505
Query: 351 DVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTV---KSFLEETIVA---IPDSVLDSPIE 404
+++KP+L PG+ +F+ K D + + LE+ I I LD P+
Sbjct: 506 ELLKPVLGILKGMPGHRIFRNKLDTYIRNYTSTLPCSEILEKAIADVDHIAPGCLDLPLH 565
Query: 405 E 405
+
Sbjct: 566 D 566
>UNIPROTKB|Q8I2W5 [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 520 (188.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 101/218 (46%), Positives = 142/218 (65%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 128
P+ VAPM++ T+ H+R + R+I+K A L+TEM+ T++Y NL+ L F +HPIV
Sbjct: 198 PFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIV 257
Query: 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
Q+GG +++++++A L YDEIN+N GCPS KVA G FG SLM +P+ V +
Sbjct: 258 CQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYE 317
Query: 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248
I +PV+VK R GVD++DS++ L FI VSS+ HFI+H+RKA L G+ P +NR
Sbjct: 318 IKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVG-CNHFIVHARKAWLKGLDPKQNR 376
Query: 249 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286
IPPL+Y Y L + +P L FTLNGGI T+ E A L
Sbjct: 377 KIPPLEYYKVYDLCKLYPHLKFTLNGGIQTIQEAIALL 414
Score = 97 (39.2 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 32/121 (26%), Positives = 54/121 (44%)
Query: 293 VMVGRAAYQNPWYTLGHVDTAIYGA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR 350
+M+GRA +N L D +Y PS+ +RR ++E Y+ Y + Y N
Sbjct: 449 IMIGRACMENIT-VLSQTDKLVYNQDIPSTAYSRRTILEAYKKYLEKNSLFY--NLSSSF 505
Query: 351 DVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTV---KSFLEETIVA---IPDSVLDSPIE 404
+++KP+L PG+ +F+ K D + + LE+ I I LD P+
Sbjct: 506 ELLKPVLGILKGMPGHRIFRNKLDTYIRNYTSTLPCSEILEKAIADVDHIAPGCLDLPLH 565
Query: 405 E 405
+
Sbjct: 566 D 566
>UNIPROTKB|Q607T6 [details] [associations]
symbol:MCA1669 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:YP_114112.1
ProteinModelPortal:Q607T6 GeneID:3102115 KEGG:mca:MCA1669
PATRIC:22607174 Uniprot:Q607T6
Length = 360
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 128/301 (42%), Positives = 177/301 (58%)
Query: 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131
SVAPMMDWTD H R RLIS+H LYTEM+ I++ G+ +R L F P +HP+ +Q+
Sbjct: 31 SVAPMMDWTDRHCRFFLRLISRHTLLYTEMVTTAAILH--GDRERLLGFHPAEHPLAIQL 88
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
GGS+ + LA+ ++A +DE+NLN GCPSP+V G FG LM +P+ V + + +
Sbjct: 89 GGSDPEALAECAKIAEFRGFDEVNLNVGCPSPRVQT-GRFGACLMAEPERVADCVRAMCE 147
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+VPV+VK RIG+DD DSY L F+ V+ R FI+H+RKA L G+SP ENR P
Sbjct: 148 AVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAEAG-CRTFIVHARKAWLQGLSPKENRQTP 206
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311
PL+Y+ L + P+L LNGGI T+DE L VM+GRAAY NP Y L D
Sbjct: 207 PLRYDVVRRLKSELPELAIVLNGGIQTLDEAERHL-SWCDGVMIGRAAYHNP-YLLAEAD 264
Query: 312 TAIYG-APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 370
YG + TR +V+E + Y L +R H + + +L +H+ PG ++
Sbjct: 265 RRCYGHSDVRPRTREEVIEDFMPYVRNELSK--GSRLHA--LTRHILGLYHATPGGKRWR 320
Query: 371 R 371
R
Sbjct: 321 R 321
>UNIPROTKB|Q48A03 [details] [associations]
symbol:CPS_0353 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 124/297 (41%), Positives = 181/297 (60%)
Query: 53 IILHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG 112
II +K +AR + SVAPM+DWTD H R RL+++H LYTEM+ I+ +G
Sbjct: 3 IITDSKP-YIARATINHKLSVAPMLDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKG 61
Query: 113 NLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFG 172
+ +L+++ +HP+VLQ+GGS++ + + ++A Y YDE+N+N GCPS +V +G FG
Sbjct: 62 D---YLSYNDAEHPLVLQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQ-NGRFG 117
Query: 173 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 232
LM +P V + ++ + + TN+PV+VK RIG+DD DSY L FI +VS + RHFII
Sbjct: 118 ACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSK-ADCRHFII 176
Query: 233 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292
H+RKA L G+SP +NR +PPL Y+ Y + DF DL ++NGGI T E N L+
Sbjct: 177 HARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQH-IDG 235
Query: 293 VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHV 349
VM+GR Y +P Y L D IY + + L+R +V++ Y D + G HV
Sbjct: 236 VMIGREIYNSP-YMLADADNEIYQSDTIKLSRSEVIDLMVPYIDETIAN-GGRAWHV 290
>TIGR_CMR|CPS_0353 [details] [associations]
symbol:CPS_0353 "TIM-barrel protein, yjbN family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 124/297 (41%), Positives = 181/297 (60%)
Query: 53 IILHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG 112
II +K +AR + SVAPM+DWTD H R RL+++H LYTEM+ I+ +G
Sbjct: 3 IITDSKP-YIARATINHKLSVAPMLDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKG 61
Query: 113 NLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFG 172
+ +L+++ +HP+VLQ+GGS++ + + ++A Y YDE+N+N GCPS +V +G FG
Sbjct: 62 D---YLSYNDAEHPLVLQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQ-NGRFG 117
Query: 173 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 232
LM +P V + ++ + + TN+PV+VK RIG+DD DSY L FI +VS + RHFII
Sbjct: 118 ACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSK-ADCRHFII 176
Query: 233 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292
H+RKA L G+SP +NR +PPL Y+ Y + DF DL ++NGGI T E N L+
Sbjct: 177 HARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQH-IDG 235
Query: 293 VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHV 349
VM+GR Y +P Y L D IY + + L+R +V++ Y D + G HV
Sbjct: 236 VMIGREIYNSP-YMLADADNEIYQSDTIKLSRSEVIDLMVPYIDETIAN-GGRAWHV 290
>UNIPROTKB|Q0C5H0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISS] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000158 GenomeReviews:CP000158_GR eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_759023.1 ProteinModelPortal:Q0C5H0 STRING:Q0C5H0
GeneID:4288047 KEGG:hne:HNE_0293 PATRIC:32213376
BioCyc:HNEP228405:GI69-337-MONOMER Uniprot:Q0C5H0
Length = 328
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 129/302 (42%), Positives = 178/302 (58%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPMMDWTD H R R ++K A L+TEM+ A+ +I+ G+ R + FS +HP+VLQ
Sbjct: 9 FSVAPMMDWTDRHCRAFHRTLTKRALLWTEMVTADAVIH--GDRQRLIGFSDVEHPLVLQ 66
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS LA+A +A Y YDE+NLNCGCPS +V G FG LM +P V + ++ +
Sbjct: 67 LGGSEPGKLAEAARIAEGYGYDEVNLNCGCPSERVQS-GAFGACLMAEPDLVADCVAAMR 125
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
A ++PV+VK RI +DD + L FI KVS ++ F +H+RKA L G+SP ENR +
Sbjct: 126 AAVSIPVTVKNRIAIDDLPARETLFTFIEKVS-VAGCSVFTVHARKAWLKGLSPKENREV 184
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH-VMVGRAAYQNPWYTLGH 309
PPL Y L PDLT LNGGI T+D+ + G VM+GRAAYQ P LG
Sbjct: 185 PPLDYGLVAELKTARPDLTIILNGGIATIDQCRDHI--GVFDGVMLGRAAYQTPGL-LGQ 241
Query: 310 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 369
VD+ ++G + + V Y+ Y A L G+N H + + +L F +PG +
Sbjct: 242 VDSDLFGEGAM-IAAGDAVRAYEPYIAARLAE-GSNL-HA--MTRHMLGLFAGQPGARQW 296
Query: 370 KR 371
+R
Sbjct: 297 RR 298
>UNIPROTKB|Q884G7 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_791948.1 ProteinModelPortal:Q884G7 GeneID:1183773
KEGG:pst:PSPTO_2126 PATRIC:19995530
BioCyc:PSYR223283:GJIX-2167-MONOMER Uniprot:Q884G7
Length = 336
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 118/279 (42%), Positives = 166/279 (59%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
FSVAPMMDWTD+H R RL+S A LYTEM+ +++ G+ +RFL +HP+ LQ
Sbjct: 20 FSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLH--GDRERFLRHDETEHPLALQ 77
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
+GGS LA LA A YDE+NLN GCPS +V + G LM P+ V + + +
Sbjct: 78 LGGSTAAGLAACARLAEAAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPQLVADCVKAMR 136
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+PV+VK RIG++ DSY +LCDF+ V + F +H+R A+L G+SP ENR I
Sbjct: 137 DAVGIPVTVKHRIGINGRDSYAELCDFVGTVHDAG-CQSFTVHARIAILEGLSPKENRDI 195
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 310
PPL+Y+ L DFP+L LNGGI T+++ + L+ VM+GR AY NP Y L V
Sbjct: 196 PPLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YLLAQV 253
Query: 311 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHV 349
D ++G+ + ++R +E + Y A + + G N HV
Sbjct: 254 DQQLFGSVAPVISRHAALESMRPYIAAHIAS-GGNMHHV 291
>TIGR_CMR|SPO_2374 [details] [associations]
symbol:SPO_2374 "tRNA-dihydrouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_167596.1 ProteinModelPortal:Q5LQV9 GeneID:3194172
KEGG:sil:SPO2374 PATRIC:23378123 Uniprot:Q5LQV9
Length = 344
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 137/349 (39%), Positives = 193/349 (55%)
Query: 65 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 123
Q + PW S APMMDWTD H R L RL+S+ LYTEM+ A ++ +G L +S E
Sbjct: 6 QNIVPWRMSCAPMMDWTDRHCRYLHRLLSRQTLLYTEMVTAPALV--RGGALHLLEYSVE 63
Query: 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 183
+HP+ LQ+GGS+ + LA+A L YDEINLNCGCPS +V G FG LM P V
Sbjct: 64 EHPVALQLGGSDPEELAQAARLGAEAGYDEINLNCGCPSDRVQS-GTFGAVLMKHPGLVA 122
Query: 184 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243
+ ++ + +V V+VKCRIGVDD D L +F+ +++ R IIH+RKA L G+S
Sbjct: 123 DCVTAMREAVDVEVTVKCRIGVDDQDPETVLPEFLEQIAGAGCQR-VIIHARKAWLQGLS 181
Query: 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
P ENR IPPL Y+ + + FP + ++NGGI+T+ A L G VM+GRAAY P
Sbjct: 182 PKENRDIPPLDYDLVHRMKARFPGMHISINGGIDTLAAARAHLDAGLDGVMIGRAAYHQP 241
Query: 304 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 363
L D IYG ++ V Y +A L T G R H + + +L F
Sbjct: 242 ADILCKADPLIYGTGTAS-DPVTAVRAMLPYIEAHLATGG--RLH--QITRHMLGLFAGR 296
Query: 364 PG-NGLFKRKADAAFQTC---KTVKSFLEETIVAIPDSVLDSPIEEAPR 408
PG G + ++ A + + V++ L++ VA ++P++ APR
Sbjct: 297 PGARGWRRMLSEGAVRPGAGPELVEAALDQ--VAGLWHTSETPLDPAPR 343
>UNIPROTKB|Q83D40 [details] [associations]
symbol:CBU_0904 "tRNA-dihydrouridine synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 128/326 (39%), Positives = 184/326 (56%)
Query: 53 IILHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG 112
++L ++ + R L S+APMM TD H+R R IS+H LYTEM+ ++ +G
Sbjct: 13 LLLKIQSIIYNRLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALL--KG 70
Query: 113 NLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFG 172
R L +SPE+HP+ LQ+GGS+ +LA LA +DEINLN GCPS +V G FG
Sbjct: 71 KQWRCLDYSPEEHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIA-GRFG 129
Query: 173 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 232
L+ + + V + ++ ++A N+PVSVK R GVDD DSY L F+ V+ R FII
Sbjct: 130 ACLLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAG-CRIFII 188
Query: 233 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292
H+RKA L G+SPAENRT+PPL Y Y L +DFP L +NGGI T++ +N LR+
Sbjct: 189 HARKAWLKGLSPAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE-VDG 247
Query: 293 VMVGRAAYQNPWYTLGHVDTA-------IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNN 345
VM+GR AY NP + D + + + LT ++V+ +Y Y + N
Sbjct: 248 VMIGREAYANPLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPY---MAKQLANG 304
Query: 346 RPHVRDVMKPLLHFFHSEPGNGLFKR 371
P + + + L F +PG ++R
Sbjct: 305 VP-LYAMTRHLNGLFQGQPGAKKWRR 329
>TIGR_CMR|CBU_0904 [details] [associations]
symbol:CBU_0904 "TIM-barrel protein, yjbN family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 128/326 (39%), Positives = 184/326 (56%)
Query: 53 IILHTKAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG 112
++L ++ + R L S+APMM TD H+R R IS+H LYTEM+ ++ +G
Sbjct: 13 LLLKIQSIIYNRLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALL--KG 70
Query: 113 NLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFG 172
R L +SPE+HP+ LQ+GGS+ +LA LA +DEINLN GCPS +V G FG
Sbjct: 71 KQWRCLDYSPEEHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIA-GRFG 129
Query: 173 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 232
L+ + + V + ++ ++A N+PVSVK R GVDD DSY L F+ V+ R FII
Sbjct: 130 ACLLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAG-CRIFII 188
Query: 233 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292
H+RKA L G+SPAENRT+PPL Y Y L +DFP L +NGGI T++ +N LR+
Sbjct: 189 HARKAWLKGLSPAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE-VDG 247
Query: 293 VMVGRAAYQNPWYTLGHVDTA-------IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNN 345
VM+GR AY NP + D + + + LT ++V+ +Y Y + N
Sbjct: 248 VMIGREAYANPLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPY---MAKQLANG 304
Query: 346 RPHVRDVMKPLLHFFHSEPGNGLFKR 371
P + + + L F +PG ++R
Sbjct: 305 VP-LYAMTRHLNGLFQGQPGAKKWRR 329
>DICTYBASE|DDB_G0277081 [details] [associations]
symbol:DDB_G0277081 "tRNA-dihydrouridine synthase A"
species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
dictyBase:DDB_G0277081 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000019 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 RefSeq:XP_642936.1 ProteinModelPortal:Q86L21
EnsemblProtists:DDB0217898 GeneID:8620805 KEGG:ddi:DDB_G0277081
InParanoid:Q86L21 OMA:PIVAQFF Uniprot:Q86L21
Length = 392
Score = 234 (87.4 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 72/243 (29%), Positives = 120/243 (49%)
Query: 69 PWFSVAPMMDWTDNHYR-TLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 127
P FS+APM D TD +R LA + K ++ E ++A+ + + L L +S ++ PI
Sbjct: 11 PIFSLAPMADVTDISFRFLLANCMGKPNVIFNEFVSADGLARNREALIDKLGYSTQEKPI 70
Query: 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAG-HGCFGVSLMLDPKFVGEAM 186
V Q G+ + ++ ++AN YD +++N GCPS KV G +L+ +P E +
Sbjct: 71 VAQFFGNKPEYFYESAKIANELGYDGVDINMGCPSRKVLSPKQASGAALITNPSLAKEIV 130
Query: 187 SVI--AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
+ A N PVSVK RIG D + ++ I + T H + ++K L + P
Sbjct: 131 KITKEALNFEKPVSVKTRIGFDKIE-IDEWIPLILESEPACLTLH--LRTKKEL--SLVP 185
Query: 245 A--ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE-VNAALRKGAHHVMVGRAAYQ 301
A E++ + + E + P+ NG + T ++ ++ + G VM+GRA Y
Sbjct: 186 AHWEHQVLDRV-VELRNQIS---PNTLLVGNGDVETYEQGIDYINQFGIDGVMIGRAVYG 241
Query: 302 NPW 304
NPW
Sbjct: 242 NPW 244
>UNIPROTKB|O53835 [details] [associations]
symbol:dus "Probable tRNA-dihydrouridine synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
ProteinModelPortal:O53835 SMR:O53835
EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
ProtClustDB:CLSK871859 Uniprot:O53835
Length = 389
Score = 215 (80.7 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 91/339 (26%), Positives = 150/339 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-----AWLYT-EMLAAETIIYQQGNLDRFLAFSPEQHP 126
+APM T+ +R L R + + + LY EM+ A +I + FS ++ P
Sbjct: 26 LAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESP 85
Query: 127 IVLQIGGSNLDNL-AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE- 184
LQ+ + D A A +A D I++N GCP PKV G G +L + G+
Sbjct: 86 RSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGG-GAALPFKRRLFGQI 144
Query: 185 -AMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 242
A +V A T++PV+VK RIG+DD +++ D +++ +H+R A
Sbjct: 145 VAAAVRATEGTDIPVTVKFRIGIDD--AHHTHLD-AGRIAEAEGAAAVALHARTAAQRYS 201
Query: 243 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQ 301
A+ I LK +R P L NG I + A + G V++GR
Sbjct: 202 GTADWEQIARLKQH-----VRTIPVLG---NGDIYDAGDALAMMSTTGCDGVVIGRGCLG 253
Query: 302 NPWYTLGHVDTAIYGAPS-SGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 360
PW + A G+P+ + T +V + + +G + +G ++ +RD+ K + +
Sbjct: 254 RPWL-FAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKG-MRDIRKHIAWYL 311
Query: 361 HSEPGNGLFKRKADAAFQTCKTVKSFLE--ETIVAIPDS 397
H P G R+A A +T + L+ + V PDS
Sbjct: 312 HGFPA-GSALRRALAMVKTFDELDCLLDRLDGTVPFPDS 349
>UNIPROTKB|Q87VS1 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
Uniprot:Q87VS1
Length = 337
Score = 203 (76.5 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 82/338 (24%), Positives = 144/338 (42%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--QQGNLDRFLAFSPEQHPIVLQ 130
+APM TD +R L R + + +EM+ ++ ++ ++ L A PE P +Q
Sbjct: 17 LAPMAGVTDQPFRQLCRQLGA-GLVVSEMVTSDMSLWNSRKSRLRMIHAGDPE--PRSVQ 73
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
I G + +A A I++N GCP+ KV G +L+ D + V + + +
Sbjct: 74 IAGGDAQMMADAARANVELGAQIIDINMGCPAKKVCNKAA-GSALLKDEQLVNDILQAVV 132
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
A +VPV++K R G D D+ N L + K++ + + +H R AE TI
Sbjct: 133 AAVDVPVTLKIRTGWD-RDNRNGLT--VAKIAEQAGIQALAVHGRTRADLYTGEAEYDTI 189
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGH 309
A+++ + NG I++ ++ L+ GA +++GRAA PW
Sbjct: 190 ---------AMIKQAVSIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWI-FRE 239
Query: 310 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG---- 365
++ + + + VE+ + A L + + VR K + + + PG
Sbjct: 240 IEHYLLTGKTLPALQSSEVERILLEHLAALHVFYGDVMGVRIARKHVGWYLATLPGAREF 299
Query: 366 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPI 403
LF R D Q C V+ F + PD+ D +
Sbjct: 300 RALFNRLEDTEAQ-CANVREFFSQGCKG-PDNQNDKEV 335
>UNIPROTKB|Q81ZD5 [details] [associations]
symbol:BAS0319 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 196 (74.1 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 67/244 (27%), Positives = 113/244 (46%)
Query: 67 LP-PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPE 123
LP P+F +APM D TD +R + + +TE +++ + +G ++ L F+ +
Sbjct: 9 LPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCHPEGMKSVRGRLIFTED 68
Query: 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 183
+ P+V I G N + + + + I++N GCP P VA G G L+L P
Sbjct: 69 EQPMVAHIWGDNPEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGK-GSGLILRPDVAA 127
Query: 184 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243
E + A +PVSVK R+G + + I+K + + H + +R+ +
Sbjct: 128 ELIQAAKAG-GLPVSVKTRLGFKELSEWEDWLTHIFKQDIANLSIH--LRTREEMSQ--V 182
Query: 244 PAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAY 300
A IP +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 183 DAHWELIPEIKK------LRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIF 236
Query: 301 QNPW 304
+NP+
Sbjct: 237 KNPF 240
>TIGR_CMR|BA_0334 [details] [associations]
symbol:BA_0334 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 196 (74.1 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 67/244 (27%), Positives = 113/244 (46%)
Query: 67 LP-PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPE 123
LP P+F +APM D TD +R + + +TE +++ + +G ++ L F+ +
Sbjct: 9 LPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCHPEGMKSVRGRLIFTED 68
Query: 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 183
+ P+V I G N + + + + I++N GCP P VA G G L+L P
Sbjct: 69 EQPMVAHIWGDNPEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGK-GSGLILRPDVAA 127
Query: 184 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243
E + A +PVSVK R+G + + I+K + + H + +R+ +
Sbjct: 128 ELIQAAKAG-GLPVSVKTRLGFKELSEWEDWLTHIFKQDIANLSIH--LRTREEMSQ--V 182
Query: 244 PAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAY 300
A IP +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 183 DAHWELIPEIKK------LRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIF 236
Query: 301 QNPW 304
+NP+
Sbjct: 237 KNPF 240
>TIGR_CMR|SPO_2089 [details] [associations]
symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
Length = 327
Score = 195 (73.7 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 82/327 (25%), Positives = 135/327 (41%)
Query: 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 126
L P +APM TD +R L + +EM+A++ ++ + + S +
Sbjct: 10 LAPPVILAPMAGITDRPFRDLVMEFGA-GMVVSEMVASQEMVQAKPGVRERAELSADVEN 68
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+Q+ G + +A+A I++N GCP+ KV +G G +L+ P +
Sbjct: 69 TAVQLAGRDTHWIAEAARQVADRGARVIDINMGCPAKKVT-NGYSGSALLKTPDHALRLI 127
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 246
+ A +VPV++K R+G DD + D + + R IH R A+
Sbjct: 128 EAVVAAVDVPVTLKTRLGWDD--TLMNAPDVARRAAEAG-VRMVTIHGRTRCQFYKGRAD 184
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWY 305
I A +R+ D+ NG I AL R GA VMVGR A PW
Sbjct: 185 WAAI---------AAVREAVDVPLIANGDITCAHTARQALDRSGADGVMVGRGAQGRPWL 235
Query: 306 TLGHVDTAIYGAPSSGLTR-RQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 364
L + A+YG P+ + + ++ + + A+L YG +R V + L ++ E
Sbjct: 236 -LAQIAHALYGTPAPEVPQGAELADMVARHYQAMLDFYGRELG-LR-VARKHLGWYMDEA 292
Query: 365 GNGLFKRKADAAFQTCKTVKSFLEETI 391
RK + +TV L E +
Sbjct: 293 ATPAPLRKLVLTARDPETVLHLLPEAL 319
>UNIPROTKB|Q3A9L8 [details] [associations]
symbol:CHY_2369 "tRNA-dihydrouridine synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 193 (73.0 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 60/233 (25%), Positives = 104/233 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
VAPM TD +R + + + TEM+ +++ + + E P+ +QI
Sbjct: 16 VAPMAGVTDKAFRLICQSFGAGLTV-TEMINDLALLHGNSKTRQMIDLQGEAMPVAVQIF 74
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
GS+ + +A+A + I++N GCP+PK+ +G G +LML P+ + + +
Sbjct: 75 GSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNG-EGAALMLKPELAEKIVMAVKNA 133
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 252
+VPVSVK R G DD+ + N + +F ++ + +H R A+ I
Sbjct: 134 VSVPVSVKIRKGFDDN-TVNAI-EFAQRMEAAGADL-ITVHGRTREQFYSGKADWEIIRR 190
Query: 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+K + NG +++ + L G VM+GRA NPW
Sbjct: 191 VKQAVKVKVAG---------NGDVDSPQKAKEMLELTGVDFVMIGRAVMGNPW 234
>TIGR_CMR|CHY_2369 [details] [associations]
symbol:CHY_2369 "putative TIM-barrel protein, NifR3
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 193 (73.0 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 60/233 (25%), Positives = 104/233 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
VAPM TD +R + + + TEM+ +++ + + E P+ +QI
Sbjct: 16 VAPMAGVTDKAFRLICQSFGAGLTV-TEMINDLALLHGNSKTRQMIDLQGEAMPVAVQIF 74
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
GS+ + +A+A + I++N GCP+PK+ +G G +LML P+ + + +
Sbjct: 75 GSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNG-EGAALMLKPELAEKIVMAVKNA 133
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 252
+VPVSVK R G DD+ + N + +F ++ + +H R A+ I
Sbjct: 134 VSVPVSVKIRKGFDDN-TVNAI-EFAQRMEAAGADL-ITVHGRTREQFYSGKADWEIIRR 190
Query: 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+K + NG +++ + L G VM+GRA NPW
Sbjct: 191 VKQAVKVKVAG---------NGDVDSPQKAKEMLELTGVDFVMIGRAVMGNPW 234
>UNIPROTKB|Q607L4 [details] [associations]
symbol:MCA1745 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
Length = 327
Score = 190 (71.9 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 72/244 (29%), Positives = 107/244 (43%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQI 131
+APM TD +R L R +EM++A + Q R E PI +QI
Sbjct: 14 LAPMAGVTDLPFRRLCRQFGA-GLAVSEMISASPAL-QATRKSRLRQDHRGEPGPISVQI 71
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G++ +A+A D I++N GCP+ KV G +L+ D K V + +
Sbjct: 72 VGADPREMAEAARRTVDLGADIIDINMGCPAKKVCNVAA-GSALLRDEKLVANILEAVVQ 130
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
VPV++K R G D S N + I K++ + R +H R AE TI
Sbjct: 131 AVPVPVTLKIRTGWDSA-SRNAVS--IGKIAESAGIRALTVHGRTRACGFAGAAEYSTIT 187
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHV 310
+K A+ P + NG I++ + A LR GA VM+GR A+ PW L +
Sbjct: 188 EVKK----AI--GIPVIA---NGDIDSPGKAEAVLRSTGADAVMIGRGAWGRPWL-LREI 237
Query: 311 DTAI 314
D +
Sbjct: 238 DARL 241
>TIGR_CMR|GSU_1005 [details] [associations]
symbol:GSU_1005 "dihydrouridine synthase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
PATRIC:22024782 ProtClustDB:CLSK828131
BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
Length = 325
Score = 188 (71.2 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 77/304 (25%), Positives = 130/304 (42%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWL-YTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131
+APM T+ +R LAR + A L +TEM++ ++ + L P P+ +Q+
Sbjct: 18 LAPMAGITNLPFRLLAR--EQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQL 75
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G + D + + + Y D I++N GCP KV G G G +LM +P V + +
Sbjct: 76 FGDDPDVMGRVAATVDGYG-DLIDINMGCPVKKVVGTGA-GSALMREPDKVRAIVRAVRR 133
Query: 192 NTNVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
T +P++VK R G D+ + Q+ + + T H SR + G A+ +
Sbjct: 134 ATRLPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLH--PRSRAQMFEGT--ADWTKL 189
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGH 309
LK ++ +G + + +V A L R G VM+ R A NPW
Sbjct: 190 AELKQAVAIPVIG---------SGDLFSAADVAAMLDRTGCDGVMIARGALGNPWIFRQA 240
Query: 310 VDTAIYGAPSSGL-TRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 368
+D P++ R V + + A+ R R++ K L + H PG
Sbjct: 241 LDLMAGREPAAASPAERLAVARRHL---ALFTEMAGERVAAREMRKHLGWYSHGLPGAAQ 297
Query: 369 FKRK 372
F+++
Sbjct: 298 FRKE 301
>TIGR_CMR|APH_0575 [details] [associations]
symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
Uniprot:Q2GKD5
Length = 315
Score = 185 (70.2 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 79/307 (25%), Positives = 132/307 (42%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM TD +RT R + L +EM+A+ +I + + P +Q+
Sbjct: 12 LAPMSGVTDLPFRTTVRKLGA-GLLISEMVASRAMILKTRQSMQKSEVCPNTS---VQLA 67
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
G + +A+A ++ I+LN GCP+ KV G G +LM D + M +
Sbjct: 68 GCTPEIMAEAAKINEDLGAKSIDLNFGCPAKKVVD-GYAGSALMKDEVIATKIMESVVKA 126
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 252
VPV+VK R+G D+ N + KV+ + IH R A+ + +
Sbjct: 127 VKVPVTVKMRMG---WDTTNLNAPTLAKVAEDVGIQMITIHGRTRSQMFSGSADWKFVKR 183
Query: 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWY---TLG 308
+K + + +NG I T+D++ AL + GA VM+GR AY PW L
Sbjct: 184 VK---------ECVKIPVIVNGDIRTLDDIVVALNESGADGVMIGRGAYGKPWLIKQALS 234
Query: 309 HV-DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 367
+ ++ I P+ +++ Y D L YG + V+ + K L + S G
Sbjct: 235 FMKNSEILPEPTKSEKLAIILDHY----DYALDYYGKDLG-VKILRKHLSWYSSSYSGAS 289
Query: 368 LFKRKAD 374
F+ + +
Sbjct: 290 YFRAQVN 296
>TIGR_CMR|NSE_0373 [details] [associations]
symbol:NSE_0373 "putative tRNA-dihydrouridine synthase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_506262.1
ProteinModelPortal:Q2GE34 STRING:Q2GE34 GeneID:3932261
KEGG:nse:NSE_0373 PATRIC:22680819 OMA:ECAKEHL
ProtClustDB:CLSK2527833 BioCyc:NSEN222891:GHFU-398-MONOMER
Uniprot:Q2GE34
Length = 331
Score = 179 (68.1 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 61/236 (25%), Positives = 106/236 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM TD YR L + + +EM+A+ +I + + + ++ SP + +Q+
Sbjct: 16 LAPMSGVTDMPYRDLVKSFGA-GLVVSEMIASRAMILKTKDTMKKVSLSPREDITAIQLA 74
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
G D +A+A ++ I++N GCP KV +G G LM D + +
Sbjct: 75 GFEPDVMAEAAKINEDMGAKIIDINFGCPVKKVV-NGYAGSYLMKDECHAAKILEATVKA 133
Query: 193 TNVPVSVKCRIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSR-KA-LLNGISPAENRT 249
+PV++K R G D+ H + +L K++ + IH R +A + G S +
Sbjct: 134 VKIPVTLKMRTGWDENHRNAPKLA----KIAEDLGIKMITIHGRTRAQMYKGKSDWQ--- 186
Query: 250 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPW 304
+ +++ + NG I T ++ AL GA +M+GR AY PW
Sbjct: 187 --------FIRTVKNTVKIPVIANGDIKTYEDAERALVESGADGIMIGRGAYGKPW 234
>TIGR_CMR|CJE_0118 [details] [associations]
symbol:CJE_0118 "tRNA-dihydrouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 Gene3D:1.10.1200.80 OMA:ECAKEHL
RefSeq:YP_178142.1 ProteinModelPortal:Q5HX43 STRING:Q5HX43
GeneID:3230881 KEGG:cjr:CJE0118 PATRIC:20041943
ProtClustDB:CLSK872423 BioCyc:CJEJ195099:GJC0-122-MONOMER
Uniprot:Q5HX43
Length = 308
Score = 175 (66.7 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 64/242 (26%), Positives = 116/242 (47%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 128
P F +APM ++D +R + + + +EM+++ ++Y+ L + ++P +
Sbjct: 8 PLF-LAPMAGFSDLPFRNVVKKFGADITI-SEMISSNALVYESSKTLHMLERAELENPYI 65
Query: 129 LQIGGSNLDNLAKATELANAYNY-DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187
+QI G + + L KA ++ N ++ D I+ NCGCP KV C G +L+ + + +
Sbjct: 66 VQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQ-CAGSALLENLELFKNLVG 124
Query: 188 VIAANTNVPV-SVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGI 242
VI N + SVK R+G ++ + ++C+ + V +S IH +RK L +G
Sbjct: 125 VIKENNKKSLTSVKFRLGFNEKYPEKMAKICESL-GVDFIS------IHGRTRKQLYSG- 176
Query: 243 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302
A+ +I K A ++ P + NG IN + +M+GRA+ N
Sbjct: 177 -KADYGSIASAK-----ASVK-IPVIA---NGDINAQNAKEVYKITKCDGLMIGRASVGN 226
Query: 303 PW 304
PW
Sbjct: 227 PW 228
>UNIPROTKB|Q8EJR8 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 172 (65.6 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 71/274 (25%), Positives = 121/274 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
VAPM TD +R L L A +EML++ ++ + + S E+ +QI
Sbjct: 14 VAPMAGVTDQAFRNLC-LRYGAALAVSEMLSSNPEVWDTDKSRQRMTHSGEEGIRSVQIA 72
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
G++ + +A+A + I++N GCP+ KV G +LM +P V + + + A
Sbjct: 73 GADPELMAQAAQFNVEQGAHIIDINMGCPAKKV-NKKLAGSALMQNPPLVKDILQAVVAA 131
Query: 193 TNVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+VPV++K R G + +H + Q+ S H +R+ + G AE TI
Sbjct: 132 VDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHG--RTRQCMYKG--NAEYDTIK 187
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY--TLG 308
+K + NG I++ ++ L G +M+GR A PW +
Sbjct: 188 AIKQNV---------SIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQ 238
Query: 309 H-VDTAIYGAPSSGLTRRQVV-----EKYQIYGD 336
H ++T AP +RQV+ + Y +YG+
Sbjct: 239 HYLETGNKLAPIEVAEQRQVMLEHLTKLYDLYGE 272
>TIGR_CMR|SO_0394 [details] [associations]
symbol:SO_0394 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 172 (65.6 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 71/274 (25%), Positives = 121/274 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
VAPM TD +R L L A +EML++ ++ + + S E+ +QI
Sbjct: 14 VAPMAGVTDQAFRNLC-LRYGAALAVSEMLSSNPEVWDTDKSRQRMTHSGEEGIRSVQIA 72
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
G++ + +A+A + I++N GCP+ KV G +LM +P V + + + A
Sbjct: 73 GADPELMAQAAQFNVEQGAHIIDINMGCPAKKV-NKKLAGSALMQNPPLVKDILQAVVAA 131
Query: 193 TNVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+VPV++K R G + +H + Q+ S H +R+ + G AE TI
Sbjct: 132 VDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHG--RTRQCMYKG--NAEYDTIK 187
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY--TLG 308
+K + NG I++ ++ L G +M+GR A PW +
Sbjct: 188 AIKQNV---------SIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQ 238
Query: 309 H-VDTAIYGAPSSGLTRRQVV-----EKYQIYGD 336
H ++T AP +RQV+ + Y +YG+
Sbjct: 239 HYLETGNKLAPIEVAEQRQVMLEHLTKLYDLYGE 272
>DICTYBASE|DDB_G0291360 [details] [associations]
symbol:dus4l "tRNA-dihydrouridine synthase 4-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 dictyBase:DDB_G0291360
GO:GO:0005739 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY RefSeq:XP_635163.1
ProteinModelPortal:Q54ES7 STRING:Q54ES7 EnsemblProtists:DDB0238074
GeneID:8628109 KEGG:ddi:DDB_G0291360 ProtClustDB:CLSZ2429554
Uniprot:Q54ES7
Length = 344
Score = 168 (64.2 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 60/242 (24%), Positives = 99/242 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +R L + YT M+ A + D + P+++Q G
Sbjct: 60 APMVRFSRLPFRMLVKKWGCDI-TYTPMIMAAEFNRSEAARDSDFTINKLDEPLIVQFGV 118
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193
+N + L A E Y I++NCGCP V G FG +L+L P+ + + + I
Sbjct: 119 NNAEELVSAAEKVKDY-CQGIDINCGCPQRWVMKEG-FGANLLLHPERIYDMVKQINNRV 176
Query: 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL 253
+P+S+K R+ D D+ + K + +H R + + P + I
Sbjct: 177 PIPISIKIRVQSDLKDTIE-----LAKRAERIGVSWITVHGRTSAMKSSHPVDYDAIK-- 229
Query: 254 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDT 312
L++D L NG + T+ + N K G + VM R NP G+ T
Sbjct: 230 -------LVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGYDKT 282
Query: 313 AI 314
I
Sbjct: 283 PI 284
>ZFIN|ZDB-GENE-040801-233 [details] [associations]
symbol:dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
ZFIN:ZDB-GENE-040801-233 Gene3D:3.20.20.70 GO:GO:0050660
HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
CTD:11062 HOVERGEN:HBG053313 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:BX072538 IPI:IPI00487005
RefSeq:NP_001003490.2 UniGene:Dr.89736 Ensembl:ENSDART00000130623
GeneID:445096 KEGG:dre:445096 InParanoid:Q5RIX6 NextBio:20831860
Uniprot:Q5RIX6
Length = 307
Score = 163 (62.4 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 61/245 (24%), Positives = 98/245 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +RTL R +T M+ A + D + P+++Q
Sbjct: 21 APMVRYSKLAFRTLVRKYDCDV-CFTPMIIAADFMRSAKARDSEFTTNKNDRPLIVQFAA 79
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-- 191
+ LA A + + ++ D ++LNCGCP G +G L+ P+ V + + +
Sbjct: 80 KDAQTLADAACVVSPFS-DGVDLNCGCPQRWAMSEG-YGACLINKPELVKDMVRHVRNQI 137
Query: 192 -NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
N N VS+K RI H Q D KV + + + +H R A+ P TI
Sbjct: 138 DNPNYAVSIKIRI----HKDVRQTVDLCQKVEAAGVS-YITVHGRTAIERH-QPVHYDTI 191
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGH 309
+K D + NG I ++ +V A G VM R NP G
Sbjct: 192 KTIK---------DSLSIPVIANGDIKSMQDVEAVCELTGVDGVMSARGLLSNPAMFSGF 242
Query: 310 VDTAI 314
+T +
Sbjct: 243 EETPL 247
>UNIPROTKB|Q81VW4 [details] [associations]
symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 139 (54.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 39/138 (28%), Positives = 63/138 (45%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM ++ +R + + EM++ + I+ L + P+ LQI
Sbjct: 22 LAPMAGVCNSAFRLTVKEFGA-GLVCAEMVSDKAILLNNKRTLDMLYIDEREKPLSLQIF 80
Query: 133 GSNLDNLAKATELANAYNY-DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G + L A + + Y D I++N GCP PK+ G +LDP + E ++ +
Sbjct: 81 GGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDA-GAKWLLDPNKIYEMVAAVVD 139
Query: 192 NTNVPVSVKCRIGVD-DH 208
PV+VK RIG D DH
Sbjct: 140 AVEKPVTVKMRIGWDEDH 157
Score = 66 (28.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 24/95 (25%), Positives = 39/95 (41%)
Query: 273 NGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY 331
NG + T + L + G VM+GRAA +PW V G T R+ ++
Sbjct: 209 NGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIYRTVKYLETGELMPEPTVREKIDVC 268
Query: 332 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 366
++ D ++ N VR++ K + GN
Sbjct: 269 MLHLDRLIDLK-NESVAVREMRKHAAWYLKGIRGN 302
>TIGR_CMR|BA_0075 [details] [associations]
symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 139 (54.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 39/138 (28%), Positives = 63/138 (45%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM ++ +R + + EM++ + I+ L + P+ LQI
Sbjct: 22 LAPMAGVCNSAFRLTVKEFGA-GLVCAEMVSDKAILLNNKRTLDMLYIDEREKPLSLQIF 80
Query: 133 GSNLDNLAKATELANAYNY-DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
G + L A + + Y D I++N GCP PK+ G +LDP + E ++ +
Sbjct: 81 GGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDA-GAKWLLDPNKIYEMVAAVVD 139
Query: 192 NTNVPVSVKCRIGVD-DH 208
PV+VK RIG D DH
Sbjct: 140 AVEKPVTVKMRIGWDEDH 157
Score = 66 (28.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 24/95 (25%), Positives = 39/95 (41%)
Query: 273 NGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY 331
NG + T + L + G VM+GRAA +PW V G T R+ ++
Sbjct: 209 NGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIYRTVKYLETGELMPEPTVREKIDVC 268
Query: 332 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 366
++ D ++ N VR++ K + GN
Sbjct: 269 MLHLDRLIDLK-NESVAVREMRKHAAWYLKGIRGN 302
>UNIPROTKB|E1C6D2 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AADN02029975 IPI:IPI00599742
ProteinModelPortal:E1C6D2 Ensembl:ENSGALT00000004402 Uniprot:E1C6D2
Length = 478
Score = 164 (62.8 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 67/241 (27%), Positives = 110/241 (45%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQ 124
+ VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE
Sbjct: 19 YVVAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFLRDANYRRENL--YGEACPED 73
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
P+++Q ++ + +A LA Y D I+LN GCP +A G +G L + + +
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQEEWDLL-Q 130
Query: 185 AMSVIAANTNVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243
M ++ AN + V + C+I V + D + + K T H +K L G++
Sbjct: 131 RM-ILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVA 189
Query: 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQN 302
+E+ A+ R + NG I + +V +RK G H VM N
Sbjct: 190 ----------SWEHIQAV-RKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHN 238
Query: 303 P 303
P
Sbjct: 239 P 239
>UNIPROTKB|E1BWI8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AADN02029975
IPI:IPI00820914 ProteinModelPortal:E1BWI8
Ensembl:ENSGALT00000038896 NextBio:20820685 Uniprot:E1BWI8
Length = 486
Score = 164 (62.8 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 67/241 (27%), Positives = 110/241 (45%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQ 124
+ VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE
Sbjct: 19 YVVAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFLRDANYRRENL--YGEACPED 73
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
P+++Q ++ + +A LA Y D I+LN GCP +A G +G L + + +
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQEEWDLL-Q 130
Query: 185 AMSVIAANTNVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243
M ++ AN + V + C+I V + D + + K T H +K L G++
Sbjct: 131 RM-ILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVA 189
Query: 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQN 302
+E+ A+ R + NG I + +V +RK G H VM N
Sbjct: 190 ----------SWEHIQAV-RKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHN 238
Query: 303 P 303
P
Sbjct: 239 P 239
>TIGR_CMR|ECH_0758 [details] [associations]
symbol:ECH_0758 "putative tRNA-dihydrouridine synthase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_507556.1
ProteinModelPortal:Q2GG77 STRING:Q2GG77 GeneID:3927061
KEGG:ech:ECH_0758 PATRIC:20576950 ProtClustDB:CLSK749467
BioCyc:ECHA205920:GJNR-761-MONOMER Uniprot:Q2GG77
Length = 317
Score = 159 (61.0 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 58/234 (24%), Positives = 103/234 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM TD +R L + + L +EM+A+ +I Q + L S Q +Q+
Sbjct: 14 LAPMSGVTDFPFRYLVKSLGA-GLLVSEMIASRAMIIQT---KQSLQKSQIQINTAVQLA 69
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
G + +A A +L I++N GCP KV + G +LM D + + +
Sbjct: 70 GCDPTIMADAAKLNEDMGAQIIDINFGCPVKKVV-NSYAGSALMKDETTAAKILESVVKA 128
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 252
+PV++K R G D++ N + K++ + + IH R A+ + I
Sbjct: 129 VKIPVTLKMRTGWDNN---NLNSPKLAKIAEETGIKMITIHGRTRTQMFTGKADWKFIRN 185
Query: 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWY 305
+K + +NG I ++++ +L + A +M+GR AY PW+
Sbjct: 186 IK---------KCVKIPVIVNGDIKNLNDIKTSLEESQADGIMIGRGAYGKPWF 230
>CGD|CAL0003746 [details] [associations]
symbol:orf19.966 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
CGD:CAL0003746 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 RefSeq:XP_716804.1
RefSeq:XP_716864.1 ProteinModelPortal:Q5A4Y0 STRING:Q5A4Y0
GeneID:3641524 GeneID:3641580 KEGG:cal:CaO19.8581
KEGG:cal:CaO19.966 Uniprot:Q5A4Y0
Length = 339
Score = 159 (61.0 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 53/236 (22%), Positives = 92/236 (38%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 128
P + PM+ ++ +R L R +YT M+ A + + + ++
Sbjct: 26 PAYIAGPMVRYSKLPFRELCRFYDVDI-VYTPMILAREFVRNEVARSTDFTTNDSDKCVI 84
Query: 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
+Q+G +N+D+ K E+ + + D I +NCGCP + G G +LM DP V E +
Sbjct: 85 VQVGVNNVDDFMKFIEMIHPF-VDGIGINCGCPIKEQVREG-IGAALMSDPDLVAELIKT 142
Query: 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248
+ + +I + H NQ DF+ KV T +H R R
Sbjct: 143 AKDKYGDSICIDTKIRI--HRDINQTIDFVNKVVEAG-TDTLTVHGRTK--------NTR 191
Query: 249 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 303
+ P+ + + + + NG T+ + + G VM R NP
Sbjct: 192 SSVPVNLDAIKIIRENVTTIPVIANGDCFTLTDFQKIVDYTGVDGVMSARGVLANP 247
>UNIPROTKB|O95620 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CH471070 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:U62767 EMBL:AK297195
EMBL:BC111774 IPI:IPI00021410 IPI:IPI00783809 RefSeq:NP_001257348.1
RefSeq:NP_853559.1 UniGene:Hs.97627 ProteinModelPortal:O95620
SMR:O95620 STRING:O95620 PaxDb:O95620 PRIDE:O95620
Ensembl:ENST00000265720 Ensembl:ENST00000402620 GeneID:11062
KEGG:hsa:11062 UCSC:uc003veh.3 CTD:11062 GeneCards:GC07P107203
HGNC:HGNC:21517 HPA:HPA044301 neXtProt:NX_O95620
PharmGKB:PA142671939 HOVERGEN:HBG053313 InParanoid:O95620 KO:K05545
OMA:AGPMVRY OrthoDB:EOG4ZCT4T PhylomeDB:O95620 GenomeRNAi:11062
NextBio:42037 ArrayExpress:O95620 Bgee:O95620 CleanEx:HS_DUS4L
Genevestigator:O95620 GermOnline:ENSG00000105865 Uniprot:O95620
Length = 317
Score = 155 (59.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 60/245 (24%), Positives = 100/245 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +RTL R S YT M+ A + D + P+++Q
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDL-CYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAA 90
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193
++ L+ A + Y + I++NCGCP G +G L+ P+ V + + +
Sbjct: 91 NDARLLSDAARIVCPYA-NGIDINCGCPQRWAMAEG-YGACLINKPELVQDMVKQVRNQV 148
Query: 194 NVP---VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
P VS+K RI HD + D K + + +H R A E R
Sbjct: 149 ETPGFSVSIKIRI----HDDLKRTVDLCQKAEATGVS-WITVHGRTA--------EERH- 194
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGH 309
P+ Y+ ++++ + NG I ++ E R G VMV R NP G+
Sbjct: 195 QPVHYDSI-KIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY 253
Query: 310 VDTAI 314
+T +
Sbjct: 254 EETPL 258
>TAIR|locus:2155528 [details] [associations]
symbol:AT5G67220 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:CP002688 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AB020742
HOGENOM:HOG000203649 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 UniGene:At.66656 UniGene:At.9615 EMBL:AY049299
EMBL:AY102157 IPI:IPI00528780 RefSeq:NP_201523.1
ProteinModelPortal:Q9FH91 SMR:Q9FH91 STRING:Q9FH91 PRIDE:Q9FH91
EnsemblPlants:AT5G67220.1 GeneID:836857 KEGG:ath:AT5G67220
TAIR:At5g67220 InParanoid:Q9FH91 OMA:VERAWAH PhylomeDB:Q9FH91
ProtClustDB:CLSN2686916 Genevestigator:Q9FH91 Uniprot:Q9FH91
Length = 423
Score = 156 (60.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 48/179 (26%), Positives = 85/179 (47%)
Query: 43 PRSLSTCTQNIILHTKAEMVARQYLP---PWFSVAPMMDWTDNHYRTLARLISKHAWLYT 99
P SL + ++ + + T+ E + P + VAPM+D ++ +R L + A YT
Sbjct: 59 PASLGSPSRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQA-AYT 117
Query: 100 EMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG 159
ML + + ++ E P+ +Q ++ D L +A + Y D +++N G
Sbjct: 118 PMLHSRIFTETEKYRNQEFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPY-CDYVDINLG 176
Query: 160 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDHDSYNQLCD 216
CP ++A G +G LM + V + +A N NVPVS K RI ++D Y ++ +
Sbjct: 177 CPQ-RIARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLE 234
>UNIPROTKB|Q9KV66 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05540 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:B82341
RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66 DNASU:2615014
GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 153 (58.9 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 60/233 (25%), Positives = 101/233 (43%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
VAPM TD +R L L +EM++ +++ + E +QI
Sbjct: 14 VAPMAGVTDRPFRELC-LRYGAGMAVSEMMSCNPALWKTAKSQNRMVHEGESGIRSVQIA 72
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
GS+ +A+A + + I++N GCP+ KV G +L+ P + + + +
Sbjct: 73 GSDPQLMAEAAQFSVENGAQIIDINMGCPAKKV-NKKLAGSALLRYPDVIEDILKAVVNA 131
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 252
NVPV++K R G D D+ N C I +++ + +H R AE +I
Sbjct: 132 VNVPVTLKTRTGWDT-DNKN--CLSIAQLAEDCGIQALALHGRTRACMYKGEAEYDSIKA 188
Query: 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+K A + P + NG I++ ++ L GA +M+GR A PW
Sbjct: 189 VK-----AAV-SIPVIA---NGDIDSPEKARYVLEYTGADALMIGRPAQGRPW 232
>TIGR_CMR|VC_0291 [details] [associations]
symbol:VC_0291 "NifR3/Smm1 family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
PIR:B82341 RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66
DNASU:2615014 GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 153 (58.9 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 60/233 (25%), Positives = 101/233 (43%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
VAPM TD +R L L +EM++ +++ + E +QI
Sbjct: 14 VAPMAGVTDRPFRELC-LRYGAGMAVSEMMSCNPALWKTAKSQNRMVHEGESGIRSVQIA 72
Query: 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 192
GS+ +A+A + + I++N GCP+ KV G +L+ P + + + +
Sbjct: 73 GSDPQLMAEAAQFSVENGAQIIDINMGCPAKKV-NKKLAGSALLRYPDVIEDILKAVVNA 131
Query: 193 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 252
NVPV++K R G D D+ N C I +++ + +H R AE +I
Sbjct: 132 VNVPVTLKTRTGWDT-DNKN--CLSIAQLAEDCGIQALALHGRTRACMYKGEAEYDSIKA 188
Query: 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304
+K A + P + NG I++ ++ L GA +M+GR A PW
Sbjct: 189 VK-----AAV-SIPVIA---NGDIDSPEKARYVLEYTGADALMIGRPAQGRPW 232
>UNIPROTKB|E1BH75 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
IPI:IPI00906369 Ensembl:ENSBTAT00000057257 OMA:RMSILAW
Uniprot:E1BH75
Length = 270
Score = 150 (57.9 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 52/180 (28%), Positives = 87/180 (48%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII----YQQGNLDRFLAFSPEQHPIV 128
VAPM+D ++ +R L+R H YT ML A+ + Y++ NL + PE P++
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAHL-CYTPMLHAQVFVRDANYRKENL--YCDVCPEDRPLI 77
Query: 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
+Q ++ + +A LA Y D I+LN GCP +A G +G L + + + MS+
Sbjct: 78 VQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQEEWDLL-QRMSI 134
Query: 189 IAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 247
+A T+ PV+ K R+ + D + + K T H +K L+G + E+
Sbjct: 135 LAWTTSSXPVTCKIRV-FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
>UNIPROTKB|J3QLE4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000582529 Uniprot:J3QLE4
Length = 309
Score = 150 (57.9 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 67/239 (28%), Positives = 107/239 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQHP 126
VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE P
Sbjct: 21 VAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFVRDANYRKENL--YCEVCPEDRP 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+++Q ++ + +A LA Y D I+LN GCP +A G +G L D + + M
Sbjct: 76 LIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQ-DEWDLLQRM 132
Query: 187 SVIAANTNVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
++ A+ + V V C+I V + D + + K T H +K L+G +
Sbjct: 133 -ILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA-- 189
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303
+E+ A+ + F NG I + +V LR G VM NP
Sbjct: 190 --------SWEHIKAVRKAVAIPVFA-NGNIQCLQDVERCLRDTGVQGVMSAEGNLHNP 239
>UNIPROTKB|P0ABT5 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 EMBL:X62399 EMBL:M95784 EMBL:S67010 EMBL:J03816
EMBL:J03245 PIR:B47043 RefSeq:NP_417726.1 RefSeq:YP_491442.1
ProteinModelPortal:P0ABT5 SMR:P0ABT5 DIP:DIP-48240N IntAct:P0ABT5
EnsemblBacteria:EBESCT00000004917 EnsemblBacteria:EBESCT00000016888
GeneID:12932871 GeneID:947707 KEGG:ecj:Y75_p3178 KEGG:eco:b3260
PATRIC:32121950 EchoBASE:EB1287 EcoGene:EG11311
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR ProtClustDB:PRK10415
BioCyc:EcoCyc:EG11311-MONOMER BioCyc:ECOL316407:JW3228-MONOMER
BioCyc:MetaCyc:EG11311-MONOMER Genevestigator:P0ABT5
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 Uniprot:P0ABT5
Length = 321
Score = 149 (57.5 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 77/288 (26%), Positives = 124/288 (43%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM TD +RTL + + +EM+++ +++ + E +QI G
Sbjct: 15 APMAGITDRPFRTLCYEMGAGLTV-SEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG 73
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193
S+ +A A + I++N GCP+ KV G +L+ P V ++ +
Sbjct: 74 SDPKEMADAARINVESGAQIIDINMGCPAKKV-NRKLAGSALLQYPDVVKSILTEVVNAV 132
Query: 194 NVPVSVKCRIG-VDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTI 250
+VPV++K R G +H + C+ I +++ + IH +R L NG AE +I
Sbjct: 133 DVPVTLKIRTGWAPEHRN----CEEIAQLAEDCGIQALTIHGRTRACLFNG--EAEYDSI 186
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY--TL 307
+K + P + NG I + A L GA +M+GRAA PW +
Sbjct: 187 RAVKQKV------SIPVIA---NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237
Query: 308 GH-VDTA--IYGAPSSGLTR---RQVVEKYQIYGDAILGTYGNNRPHV 349
H +DT + P + + R V E + YG A G Y R HV
Sbjct: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPA-KG-YRIARKHV 283
>UNIPROTKB|Q6P1R4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 EMBL:BC017081
EMBL:BC062566 EMBL:BC064918 IPI:IPI00335251 RefSeq:NP_071439.3
UniGene:Hs.514599 UniGene:Hs.741994 ProteinModelPortal:Q6P1R4
SMR:Q6P1R4 STRING:Q6P1R4 DMDM:74749069 PaxDb:Q6P1R4 PRIDE:Q6P1R4
DNASU:64118 Ensembl:ENST00000306796 Ensembl:ENST00000354321
GeneID:64118 KEGG:hsa:64118 UCSC:uc002kdq.3 CTD:64118
GeneCards:GC17M080015 H-InvDB:HIX0039074 HGNC:HGNC:30086
HPA:HPA023384 neXtProt:NX_Q6P1R4 PharmGKB:PA142671936
eggNOG:COG0042 HOGENOM:HOG000203649 HOVERGEN:HBG061241
InParanoid:Q6P1R4 KO:K05542 OMA:WEMAEEY OrthoDB:EOG4SN1NJ
GenomeRNAi:64118 NextBio:65992 ArrayExpress:Q6P1R4 Bgee:Q6P1R4
CleanEx:HS_DUS1L Genevestigator:Q6P1R4 GermOnline:ENSG00000169718
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 Uniprot:Q6P1R4
Length = 473
Score = 150 (57.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 67/239 (28%), Positives = 107/239 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQHP 126
VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE P
Sbjct: 21 VAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFVRDANYRKENL--YCEVCPEDRP 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+++Q ++ + +A LA Y D I+LN GCP +A G +G L D + + M
Sbjct: 76 LIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQ-DEWDLLQRM 132
Query: 187 SVIAANTNVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
++ A+ + V V C+I V + D + + K T H +K L+G +
Sbjct: 133 -ILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA-- 189
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303
+E+ A+ + F NG I + +V LR G VM NP
Sbjct: 190 --------SWEHIKAVRKAVAIPVFA-NGNIQCLQDVERCLRDTGVQGVMSAEGNLHNP 239
>SGD|S000004545 [details] [associations]
symbol:DUS1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IMP;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 SGD:S000004545
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006946
EMBL:Z46373 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 PANTHER:PTHR11082 GeneTree:ENSGT00550000075089
OMA:RCQPYFR OrthoDB:EOG480N5B PIR:S48817 RefSeq:NP_013631.1
ProteinModelPortal:P53759 SMR:P53759 IntAct:P53759
MINT:MINT-4083769 STRING:P53759 PaxDb:P53759 PeptideAtlas:P53759
EnsemblFungi:YML080W GeneID:854895 KEGG:sce:YML080W CYGD:YML080w
BioCyc:MetaCyc:MONOMER-16676 NextBio:977861 Genevestigator:P53759
GermOnline:YML080W Uniprot:P53759
Length = 423
Score = 149 (57.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 86/346 (24%), Positives = 140/346 (40%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII----YQQGNLDRFLAFSPEQHPIV 128
VAPM+D ++ +R L+R YT ML A+ Y++ N L S P+V
Sbjct: 33 VAPMVDQSELAWRILSRRYGA-TLAYTPMLHAKLFATSKKYREDNWSS-LDGSSVDRPLV 90
Query: 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
+Q ++ + L A +L D ++LN GCP +A G +G LM + + ++
Sbjct: 91 VQFCANDPEYLLAAAKLVED-KCDAVDLNLGCPQG-IAKKGHYGSFLMEEWDLIHNLINT 148
Query: 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248
+ N VPV+ K RI D S N + + T H + +K G++ E
Sbjct: 149 LHKNLKVPVTAKIRIFDDCEKSLNY-AKMVLDAGAQFLTVHGRVREQKGQKTGLANWET- 206
Query: 249 TIPPLKYEYYYALLRD-FPDLT-FTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW- 304
+KY LRD P T F NG I ++++ + GA VM NP
Sbjct: 207 ----IKY------LRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGV 256
Query: 305 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNN--RPHVRDVMKPLLHFFHS 362
+ +G P + + E +QI + + H +++P L H+
Sbjct: 257 FNVGQTKNKEKIFPR---VDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPH-HT 312
Query: 363 EPGNGLFKRKADAAF-----QTCKTVKSFLEETIVAIPDSVLDSPI 403
+ + L A A + Q K V+ ++E I PD + I
Sbjct: 313 DIRSTLATMNAKATWEEWEEQVVKPVEKVVQE-IFEQPDIAIKDEI 357
>UNIPROTKB|F1NHN2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine synthase" species:9031
"Gallus gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 OMA:AGPMVRY GeneTree:ENSGT00550000074907
EMBL:AC147596 IPI:IPI00813011 Ensembl:ENSGALT00000039460
Uniprot:F1NHN2
Length = 307
Score = 145 (56.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 60/245 (24%), Positives = 98/245 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +RTL R YT M+ A + D + +P+++Q
Sbjct: 20 APMVRYSKLAFRTLVRRYGCDL-CYTPMVVAADFVRSAKARDSEFTTNRGDNPLIVQFAA 78
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193
L A L + D ++LNCGCP G +G L+ P+ V + + +
Sbjct: 79 KEAQVLCDAALLVCPFA-DGVDLNCGCPQRWAMAEG-YGACLINKPELVRDMVRHVRNQI 136
Query: 194 NVP---VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+ P VS+K RI H+ + D K + + +H R E R
Sbjct: 137 DNPRFSVSIKIRI----HEDLKKTVDLCKKAEATGVS-WITVHGRNI--------EERH- 182
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQNPWYTLGH 309
P+ Y+ ++++ + NG I T+ D N GA VMV R NP G+
Sbjct: 183 QPVHYDAI-KVIKESIHIPVVANGDIKTLKDAENVHHLTGADGVMVARGLLANPAMFAGY 241
Query: 310 VDTAI 314
+T +
Sbjct: 242 EETPL 246
>UNIPROTKB|J3QQZ0 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578907 Uniprot:J3QQZ0
Length = 301
Score = 144 (55.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 68/241 (28%), Positives = 109/241 (45%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQHP 126
VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE P
Sbjct: 21 VAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFVRDANYRKENL--YCEVCPEDRP 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+++Q ++ + +A LA Y D I+LN GCP +A G +G L D + + M
Sbjct: 76 LIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQ-DEWDLLQRM 132
Query: 187 SVIAANTNVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245
++ A+ + V V C+I V + D + + K T H +K L+G +
Sbjct: 133 -ILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA-- 189
Query: 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMV--GRAAYQN 302
+E+ A+ + F NG I + +V LR G VM G+ Q
Sbjct: 190 --------SWEHIKAVRKAVAIPVFA-NGNIQCLQDVERCLRDTGVQGVMSAGGQGPGQQ 240
Query: 303 P 303
P
Sbjct: 241 P 241
>UNIPROTKB|Q489F6 [details] [associations]
symbol:CPS_0550 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_267308.1 ProteinModelPortal:Q489F6
STRING:Q489F6 GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 145 (56.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 74/274 (27%), Positives = 117/274 (42%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM TD +R L + +EML++ ++ + +QI
Sbjct: 14 LAPMAGITDQPFRQLCCQLGA-GLAVSEMLSSNPKVWNTEKSKLRMLHGDAAGIRSVQIA 72
Query: 133 GSNLDNLAKATELANAYNYDEI-NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
GS D LA A ++ NA N +I ++N GCP+ KV G +L+ +P V + +
Sbjct: 73 GSCPDELAFAAKV-NADNGAQIIDINMGCPAKKV-NKKLAGSALLREPAQVERIVQSVVN 130
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
++PV++K R G + D+ N + I K++ S +H R AE TI
Sbjct: 131 AVDIPVTLKIRTGWCE-DTRNGI--EIAKIAENSGIASLAVHGRTRNDFYKGNAEYDTIK 187
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPW------ 304
+K L P + NG I + ++ L GA +MVGR A PW
Sbjct: 188 AIK------LAISIPVVA---NGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIFREIN 238
Query: 305 YTL--GHVDTAIYGAPSSGLTRRQVVEKYQIYGD 336
Y L G+ +A + + V+E +Q YGD
Sbjct: 239 YFLATGNKMSAPELSEVRSIVLAHVMELHQFYGD 272
>TIGR_CMR|CPS_0550 [details] [associations]
symbol:CPS_0550 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:YP_267308.1 ProteinModelPortal:Q489F6 STRING:Q489F6
GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 145 (56.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 74/274 (27%), Positives = 117/274 (42%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132
+APM TD +R L + +EML++ ++ + +QI
Sbjct: 14 LAPMAGITDQPFRQLCCQLGA-GLAVSEMLSSNPKVWNTEKSKLRMLHGDAAGIRSVQIA 72
Query: 133 GSNLDNLAKATELANAYNYDEI-NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
GS D LA A ++ NA N +I ++N GCP+ KV G +L+ +P V + +
Sbjct: 73 GSCPDELAFAAKV-NADNGAQIIDINMGCPAKKV-NKKLAGSALLREPAQVERIVQSVVN 130
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
++PV++K R G + D+ N + I K++ S +H R AE TI
Sbjct: 131 AVDIPVTLKIRTGWCE-DTRNGI--EIAKIAENSGIASLAVHGRTRNDFYKGNAEYDTIK 187
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPW------ 304
+K L P + NG I + ++ L GA +MVGR A PW
Sbjct: 188 AIK------LAISIPVVA---NGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIFREIN 238
Query: 305 YTL--GHVDTAIYGAPSSGLTRRQVVEKYQIYGD 336
Y L G+ +A + + V+E +Q YGD
Sbjct: 239 YFLATGNKMSAPELSEVRSIVLAHVMELHQFYGD 272
>UNIPROTKB|D4A0T1 [details] [associations]
symbol:Dus4l "Protein Dus4l" species:10116 "Rattus
norvegicus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
RGD:1311445 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CH473947
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 IPI:IPI00951041
RefSeq:NP_001129275.1 UniGene:Rn.41975 Ensembl:ENSRNOT00000068419
GeneID:366593 KEGG:rno:366593 NextBio:689691 Uniprot:D4A0T1
Length = 321
Score = 144 (55.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 60/245 (24%), Positives = 99/245 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +RTL R S YT M+ A + D + P+++Q
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDL-CYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAA 90
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI---A 190
++ L+ A + Y I++NCGCP G +G L+ P+ V + + +
Sbjct: 91 NDARLLSDAALIVCPYA-SGIDINCGCPQRWAMADG-YGACLINKPELVLDMVRQVRNRV 148
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
N VS+K RI HD + D KV + + +H R E R
Sbjct: 149 ENPRFSVSIKIRI----HDDLARTIDLCRKVEATGVS-WITVHGRTV--------EERH- 194
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEV-NAALRKGAHHVMVGRAAYQNPWYTLGH 309
P+ Y+ ++++ + NG I ++ E N G VMV R NP G+
Sbjct: 195 QPVHYDAI-KMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
Query: 310 VDTAI 314
+T +
Sbjct: 254 EETPL 258
>RGD|1311445 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 RGD:1311445 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
IPI:IPI00914747 ProteinModelPortal:D4A3L7
Ensembl:ENSRNOT00000011068 UCSC:RGD:1311445 ArrayExpress:D4A3L7
Uniprot:D4A3L7
Length = 324
Score = 144 (55.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 60/245 (24%), Positives = 99/245 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +RTL R S YT M+ A + D + P+++Q
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDL-CYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAA 90
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI---A 190
++ L+ A + Y I++NCGCP G +G L+ P+ V + + +
Sbjct: 91 NDARLLSDAALIVCPYA-SGIDINCGCPQRWAMADG-YGACLINKPELVLDMVRQVRNRV 148
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
N VS+K RI HD + D KV + + +H R E R
Sbjct: 149 ENPRFSVSIKIRI----HDDLARTIDLCRKVEATGVS-WITVHGRTV--------EERH- 194
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEV-NAALRKGAHHVMVGRAAYQNPWYTLGH 309
P+ Y+ ++++ + NG I ++ E N G VMV R NP G+
Sbjct: 195 QPVHYDAI-KMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
Query: 310 VDTAI 314
+T +
Sbjct: 254 EETPL 258
>FB|FBgn0031238 [details] [associations]
symbol:CG3645 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
KO:K05542 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AY051946 EMBL:BT124833
RefSeq:NP_608507.1 RefSeq:NP_722619.1 UniGene:Dm.4432 SMR:Q9VPM1
IntAct:Q9VPM1 MINT:MINT-325917 STRING:Q9VPM1
EnsemblMetazoa:FBtr0078140 EnsemblMetazoa:FBtr0078141 GeneID:33190
KEGG:dme:Dmel_CG3645 UCSC:CG3645-RA FlyBase:FBgn0031238
InParanoid:Q9VPM1 OrthoDB:EOG41VHJ8 GenomeRNAi:33190 NextBio:782335
Uniprot:Q9VPM1
Length = 505
Score = 147 (56.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 59/236 (25%), Positives = 96/236 (40%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 128
P + VAPM+D ++ +R L R Y+ M A L PE P++
Sbjct: 28 PRYVVAPMVDQSELAWRMLCRRYGAEL-CYSPMYHANLFATDPKYRKDALQTCPEDRPLI 86
Query: 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
+Q G++ + A LA + D +++N GCP +A G +G L + + + E +S
Sbjct: 87 IQFCGNDAQQILDAALLAQDH-CDAVDINLGCPQA-IAKRGHYGSFLQDEWELLTEIVST 144
Query: 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248
+ A VPV+ K RI +D + + + T H +K L G++ N
Sbjct: 145 LHAKLAVPVTCKIRI-FEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVA---NW 200
Query: 249 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303
Y +R + NG I +D+V+ L + G VM NP
Sbjct: 201 N--------YIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNP 248
>WB|WBGene00016674 [details] [associations]
symbol:C45G9.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:FO080873 PIR:A88449
RefSeq:NP_498078.2 ProteinModelPortal:Q09504 SMR:Q09504
STRING:Q09504 EnsemblMetazoa:C45G9.2 GeneID:183479
KEGG:cel:CELE_C45G9.2 UCSC:C45G9.2 CTD:183479 WormBase:C45G9.2
InParanoid:Q09504 NextBio:921288 Uniprot:Q09504
Length = 284
Score = 142 (55.0 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 58/241 (24%), Positives = 102/241 (42%)
Query: 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 135
M+ ++ +R L R+ +T M+ A+ I + L+ P+++Q +
Sbjct: 1 MVRYSKLAFRQLVRVYDVDV-CFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDD 59
Query: 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195
L++A E+ + ++LNCGCP V G FG +L+ P+ + + + A
Sbjct: 60 PFVLSEAAEMVYKCSTG-VDLNCGCPKHDVRSKG-FGSALLSKPELLADMVRQTRARIPD 117
Query: 196 P---VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 252
P VS+K RI +HD + D K + T H +H R +P++ P
Sbjct: 118 PDFSVSLKIRI---NHD-IEKTVDLCRKAEAAGVT-HLTVHGR-------TPSQRAE--P 163
Query: 253 LKYEYYYALLRDFPDLTFTLNGGINTVDE-VNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311
+ + +++D + NGGI T +E + A + G +M NP GH
Sbjct: 164 IDIQAL-RIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEH 222
Query: 312 T 312
T
Sbjct: 223 T 223
>MGI|MGI:1919166 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 MGI:MGI:1919166 Gene3D:3.20.20.70
GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313
KO:K05545 OrthoDB:EOG4ZCT4T EMBL:AK010138 EMBL:BC109351
IPI:IPI00109359 RefSeq:NP_082278.1 UniGene:Mm.62979
ProteinModelPortal:Q32M08 SMR:Q32M08 STRING:Q32M08 PRIDE:Q32M08
Ensembl:ENSMUST00000020977 GeneID:71916 KEGG:mmu:71916
UCSC:uc007nhr.1 GeneTree:ENSGT00550000074907 InParanoid:Q32M08
NextBio:334944 Bgee:Q32M08 CleanEx:MM_DUS4L Genevestigator:Q32M08
GermOnline:ENSMUSG00000020648 Uniprot:Q32M08
Length = 324
Score = 143 (55.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 60/245 (24%), Positives = 99/245 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +RTL R S YT M+ A + D + P+++Q
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDL-CYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFAA 90
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193
++ L+ A L Y + I++NCGCP G +G L+ P+ V + + +
Sbjct: 91 NDARLLSDAALLVCPYA-NGIDINCGCPQRWAMADG-YGACLINKPELVHDMVRQVRNRV 148
Query: 194 NVP---VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
P VS+K RI HD + D K + + +H R E R
Sbjct: 149 ESPRFSVSIKIRI----HDDLARTIDLCRKAEATGVS-WITVHGRTV--------EERH- 194
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEV-NAALRKGAHHVMVGRAAYQNPWYTLGH 309
P+ Y+ ++++ + NG I ++ E N G VMV R NP G+
Sbjct: 195 QPVHYDAI-KMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
Query: 310 VDTAI 314
+T +
Sbjct: 254 EETPL 258
>UNIPROTKB|E2RRJ8 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AAEX03011212 RefSeq:XP_540383.2
Ensembl:ENSCAFT00000006298 GeneID:483264 KEGG:cfa:483264
Uniprot:E2RRJ8
Length = 317
Score = 142 (55.0 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 59/245 (24%), Positives = 98/245 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +RTL R YT M+ A + D + P+++Q
Sbjct: 32 APMVRYSKLAFRTLVRKYGCDL-CYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFAA 90
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI---A 190
++ L+ A + Y + I++NCGCP G +G L+ P+ V + + +
Sbjct: 91 NDARLLSDAARIVCPYA-NGIDINCGCPQRWAMAEG-YGACLINKPELVRDMVKQVRNQV 148
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
N VS+K RI HD + D K + + +H R E R
Sbjct: 149 ENPRFSVSIKIRI----HDDLTRTIDLCRKAEATGVS-WITVHGRTV--------EERH- 194
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEV-NAALRKGAHHVMVGRAAYQNPWYTLGH 309
P+ YE ++++ + NG I ++ E N G VMV R NP G+
Sbjct: 195 QPVHYEAI-KIIKENMSIPVIANGDIRSLKEAENVWHITGTDGVMVARGLLANPAMFAGY 253
Query: 310 VDTAI 314
+T +
Sbjct: 254 NETPL 258
>ZFIN|ZDB-GENE-030131-1435 [details] [associations]
symbol:dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
ZFIN:ZDB-GENE-030131-1435 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:BX897685 IPI:IPI00481340
ProteinModelPortal:F1QQD1 Ensembl:ENSDART00000127028
ArrayExpress:F1QQD1 Bgee:F1QQD1 Uniprot:F1QQD1
Length = 511
Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 66/241 (27%), Positives = 110/241 (45%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQ 124
F VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + + E
Sbjct: 51 FVVAPMVDQSELAWRLLSR---RHGAELCYTPMLHAQVFVRDANYRRENL--YSEVNQED 105
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
P++ Q ++ + +A LA Y D I+LN GCP +A G +GV L D + E
Sbjct: 106 RPLITQFCANDPEVFIQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGVFLQ-DEWDLLE 162
Query: 185 AMSVIAANTNVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243
M + AN + V + C+I V + + + + K T H +K L GI+
Sbjct: 163 KM-IKLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAGCQLLTVHGRTKDQKGALTGIA 221
Query: 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQN 302
+++ A+ R+ ++ NG I + +V+ + + G VM N
Sbjct: 222 ----------SWKHIKAV-REAVNIPVFANGNIQHLSDVHHCMEETGVQGVMSAEGNLHN 270
Query: 303 P 303
P
Sbjct: 271 P 271
>POMBASE|SPBC36B7.04 [details] [associations]
symbol:SPBC36B7.04 "tRNA dihydrouridine synthase Dus1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006400 "tRNA modification" evidence=ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PomBase:SPBC36B7.04 GO:GO:0005739
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:NP_595986.1
ProteinModelPortal:Q9HGN6 STRING:Q9HGN6 EnsemblFungi:SPBC36B7.04.1
GeneID:2541048 KEGG:spo:SPBC36B7.04 OMA:RCQPYFR OrthoDB:EOG480N5B
NextBio:20802162 Uniprot:Q9HGN6
Length = 399
Score = 142 (55.0 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 69/329 (20%), Positives = 140/329 (42%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS----PEQHPIV 128
+APM+D ++ +R LAR S Y+ M + ++ + R FS PE+ P++
Sbjct: 22 LAPMVDQSELPWRILARR-SGADLCYSPMFHSR--LFGESEDYRNKVFSTRTIPEERPLI 78
Query: 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
+Q G++ + + KA ++A Y D +++N GCP +A G +G L + + ++
Sbjct: 79 IQFCGNDPEIMLKAAKIAAPY-CDAVDVNLGCPQG-IAKKGKYGSFLQENWNLIESIITK 136
Query: 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248
+ ++PV+ K RI D + + I K + H + +K GI+
Sbjct: 137 LHTELSIPVTAKIRIFPDPQKTLDY-AKMILKAGASILAVHGRLREQKGHFTGIAD---- 191
Query: 249 TIPPLKYEYYYALLRDFPDLTFTL-NGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT 306
+E L ++ P T NG I +++ ++ G V+ + NP
Sbjct: 192 ------WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIF 245
Query: 307 LGHVDTAIYGAPS-SGLTRR--QVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 363
L + P + ++ ++++ D + + H+ +M+PLL H++
Sbjct: 246 LPPSSPLMTLYPRIDDMCEEYLNIIREFKLESD--YSSLSAIKGHLFKLMRPLLSI-HTD 302
Query: 364 PGNGLFKRKADAAFQTCKTVKSFLEETIV 392
+ L + F+T V + L + ++
Sbjct: 303 IRSKLAQGCTPRDFETFPPVVAMLRKRLL 331
>UNIPROTKB|E2R9L8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 CTD:64118 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 RefSeq:XP_848227.1 ProteinModelPortal:E2R9L8
Ensembl:ENSCAFT00000009615 GeneID:475927 KEGG:cfa:475927
NextBio:20851671 Uniprot:E2R9L8
Length = 475
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 64/240 (26%), Positives = 106/240 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQHP 126
VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE P
Sbjct: 21 VAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFVRDANYRKENL--YCEVCPEDRP 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+++Q ++ + +A LA Y D I+LN GCP +A G +G L + + +
Sbjct: 76 LIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQEEWDLLQRMI 133
Query: 187 SVIAANTNVPVSVKCRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
+ +VPV+ K R+ +D Y Q+ + K T H +K L+G +
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLE---KAGCQLLTVHGRTKEQKGPLSGTA- 189
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303
+E+ A+ + F NG I + +V ++ G VM NP
Sbjct: 190 ---------SWEHIKAVRKAVAIPVFA-NGNIQCLRDVERCIQDTGVQGVMSAEGNLHNP 239
>UNIPROTKB|J9NYR0 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 Ensembl:ENSCAFT00000045880 Uniprot:J9NYR0
Length = 584
Score = 142 (55.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 64/240 (26%), Positives = 106/240 (44%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQHP 126
VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE P
Sbjct: 21 VAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFVRDANYRKENL--YCEVCPEDRP 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+++Q ++ + +A LA Y D I+LN GCP +A G +G L + + +
Sbjct: 76 LIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQEEWDLLQRMI 133
Query: 187 SVIAANTNVPVSVKCRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
+ +VPV+ K R+ +D Y Q+ + K T H +K L+G +
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLE---KAGCQLLTVHGRTKEQKGPLSGTA- 189
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303
+E+ A+ + F NG I + +V ++ G VM NP
Sbjct: 190 ---------SWEHIKAVRKAVAIPVFA-NGNIQCLRDVERCIQDTGVQGVMSAEGNLHNP 239
>CGD|CAL0004455 [details] [associations]
symbol:orf19.1404 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0004455 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_714575.1
RefSeq:XP_714669.1 ProteinModelPortal:Q59YC2 STRING:Q59YC2
GeneID:3643687 GeneID:3643817 KEGG:cal:CaO19.1404
KEGG:cal:CaO19.8982 Uniprot:Q59YC2
Length = 467
Score = 139 (54.0 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 78/279 (27%), Positives = 117/279 (41%)
Query: 45 SLSTCTQNIILHTKAEMVARQYL----PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTE 100
S S T + + TK + RQ P VAPM+D ++ +R L+R YT
Sbjct: 32 STSVATDSAFVKTK--LTGRQLYNAIGQPKTIVAPMVDQSELAWRILSRRYGAQL-CYTP 88
Query: 101 MLAAETIIYQQGNLDRFLAFSPE-----QHPIVLQIGGSNLDNLAKATELANAYNYDEIN 155
M A+ Q+ + + + P+V+Q ++ D L +A +L D I+
Sbjct: 89 MFHAKLFATQEKYRNSMWTTNLDGNKDLDRPLVVQFCANDPDYLLQAAKLIEN-ECDAID 147
Query: 156 LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215
LN GCP +A G +G LM D V + + + N ++PV+ K RI +D Y +
Sbjct: 148 LNLGCPQG-IARKGKYGAFLMDDWDLVYKLIKNLHDNLSIPVTAKIRI----YDDYEKSL 202
Query: 216 DFIYKVSSLSPTRHFI-IHSRKALLNGISPA-ENRTIPPLKYEYYYALLRD-FP-DLTFT 271
+ V L FI +H R + G + N I LKY LRD P D F
Sbjct: 203 KYAKMV--LDAGAQFITVHGRTREMKGQATGLANWKI--LKY------LRDNLPQDQVFF 252
Query: 272 LNGGINTVDEVNAALRKGA-HHVMVGRAAYQNP--WYTL 307
NG I ++ + A VM NP ++TL
Sbjct: 253 SNGNILYPSDIQRCQSETACDAVMSAEGNLYNPGVFWTL 291
>FB|FBgn0032750 [details] [associations]
symbol:CG10495 species:7227 "Drosophila melanogaster"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AY069347 RefSeq:NP_609939.1
UniGene:Dm.465 SMR:Q9VJ06 STRING:Q9VJ06 EnsemblMetazoa:FBtr0081150
GeneID:35179 KEGG:dme:Dmel_CG10495 UCSC:CG10495-RA
FlyBase:FBgn0032750 InParanoid:Q9VJ06 OrthoDB:EOG4X3FH5
GenomeRNAi:35179 NextBio:792243 Uniprot:Q9VJ06
Length = 396
Score = 137 (53.3 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 52/233 (22%), Positives = 97/233 (41%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +R L RL +T M+ +++I + + + P++ Q
Sbjct: 28 APMVRYSKLEFRRLVRLNGVQL-AFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAA 86
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193
+ + +L Y D I+LNCGCP G +G ++ P+ V + + +
Sbjct: 87 KDPTEFVTSAQLIYPY-VDGIDLNCGCPQSWAMAKG-YGCGMLRQPELVHQVVQEVRRTL 144
Query: 194 --NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251
+ VSVK R+ + +S + D ++ S T F+ L+G +PA+ +
Sbjct: 145 PGDFSVSVKMRL-LGGEESLQRTIDLARQLESAGVT--FLT------LHGRTPAQKHSKD 195
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQNP 303
L + +R + +NG + + D + + GA VM R NP
Sbjct: 196 TLDIPAM-SQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANP 247
>RGD|708389 [details] [associations]
symbol:Pp3111 "PP3111 protein" species:10116 "Rattus norvegicus"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 RGD:708389 Gene3D:3.20.20.70
GO:GO:0050660 HOVERGEN:HBG061241 KO:K05542 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:AF508021 EMBL:AY327509
EMBL:AY327510 IPI:IPI00203718 RefSeq:NP_742015.1 UniGene:Rn.179335
ProteinModelPortal:Q8K582 PRIDE:Q8K582 GeneID:246185
KEGG:rno:246185 CTD:246185 NextBio:623466 Genevestigator:Q8K582
Uniprot:Q8K582
Length = 438
Score = 137 (53.3 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 61/238 (25%), Positives = 103/238 (43%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQHP 126
VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE P
Sbjct: 21 VAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFVRDANYRKENL--YCDVCPEDRP 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+++Q ++ + +A LA Y D I+LN GCP +A G +G L + + +
Sbjct: 76 LIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGRYGAFLQEEWDLLQRMI 133
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 246
+ +VPV+ K R+ + D + + K T H +K + G +
Sbjct: 134 LLAHERLSVPVTCKIRV-FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA--- 189
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303
+E+ A+ R + NG I + +V ++ G VM NP
Sbjct: 190 -------SWEHIKAV-RKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNP 239
>MGI|MGI:1915980 [details] [associations]
symbol:Dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
MGI:MGI:1915980 Gene3D:3.20.20.70 GO:GO:0050660 CTD:64118
eggNOG:COG0042 HOVERGEN:HBG061241 KO:K05542 OrthoDB:EOG4SN1NJ
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AK004041
EMBL:AK088243 EMBL:BC019480 IPI:IPI00224714 RefSeq:NP_081100.2
UniGene:Mm.180622 ProteinModelPortal:Q8C2P3 SMR:Q8C2P3
STRING:Q8C2P3 PRIDE:Q8C2P3 Ensembl:ENSMUST00000167023 GeneID:68730
KEGG:mmu:68730 UCSC:uc007mur.1 GeneTree:ENSGT00550000075089
InParanoid:Q8C2P3 NextBio:327790 Bgee:Q8C2P3 CleanEx:MM_DUS1L
Genevestigator:Q8C2P3 GermOnline:ENSMUSG00000025155 Uniprot:Q8C2P3
Length = 475
Score = 137 (53.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 61/238 (25%), Positives = 103/238 (43%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQHP 126
VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE P
Sbjct: 21 VAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFVRDANYRKENL--YCDVCPEDRP 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+++Q ++ + +A LA Y D I+LN GCP +A G +G L + + +
Sbjct: 76 LIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQEEWDLLQRMI 133
Query: 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 246
+ +VPV+ K R+ + D + + K T H +K + G +
Sbjct: 134 LLAHERLSVPVTCKIRV-FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA--- 189
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303
+E+ A+ R + NG I + +V ++ G VM NP
Sbjct: 190 -------SWEHIKAV-RKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNP 239
>SGD|S000004397 [details] [associations]
symbol:DUS4 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=ISS;IMP] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000004397 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006945
EMBL:U19729 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 OrthoDB:EOG4PZNGJ EMBL:AY558586
PIR:S55961 RefSeq:NP_013509.1 ProteinModelPortal:Q06063 SMR:Q06063
IntAct:Q06063 STRING:Q06063 PaxDb:Q06063 EnsemblFungi:YLR405W
GeneID:851121 KEGG:sce:YLR405W CYGD:YLR405w
BioCyc:MetaCyc:MONOMER-16679 NextBio:967845 Genevestigator:Q06063
GermOnline:YLR405W Uniprot:Q06063
Length = 367
Score = 133 (51.9 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 52/243 (21%), Positives = 102/243 (41%)
Query: 75 PMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS 134
PM+ ++ +R L R + +Y+ M+ A + + L+ + E P+++Q+G +
Sbjct: 45 PMVRYSKLPFRQLCREYNVDI-VYSPMILAREYVRNEHARISDLSTNNEDTPLIVQVGVN 103
Query: 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194
N+ +L K E+ Y D I +NCGCP + G G +L+ + + + +
Sbjct: 104 NVADLLKFVEMVAPY-CDGIGINCGCPIKEQIREG-IGCALIYNSDLLCSMVHAVKDKYG 161
Query: 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 254
+ ++ +I + H++ ++ + K+ IH R PA + +K
Sbjct: 162 DKLRIETKIRI--HEALDETVELCRKLCDAG-VDWITIHGRTRRTRSSQPAN---LDAIK 215
Query: 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTA 313
Y ++ P + NG + ++ + GAH VM R NP G+ T
Sbjct: 216 YIIENISDKNVPVIA---NGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYT-TC 271
Query: 314 IYG 316
+G
Sbjct: 272 PWG 274
>UNIPROTKB|J3QQL9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 HGNC:HGNC:30086
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Ensembl:ENST00000577907 Uniprot:J3QQL9
Length = 152
Score = 111 (44.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 49/151 (32%), Positives = 75/151 (49%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQHP 126
VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE P
Sbjct: 21 VAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFVRDANYRKENL--YCEVCPEDRP 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
+++Q A LA Y D I+LN GCP +A G +G L D + + M
Sbjct: 76 LIVQ-----------AALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQ-DEWDLLQRM 121
Query: 187 SVIA-ANTNVPVSVKCRI--GVDDHDSYNQL 214
++A +VPV+ K R+ +D Y Q+
Sbjct: 122 ILLAHEKLSVPVTCKIRVFPEIDKTVRYAQM 152
>DICTYBASE|DDB_G0278803 [details] [associations]
symbol:dus1l "tRNA-dihydrouridine synthase 1-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0278803 GO:GO:0005634 Gene3D:3.20.20.70
GenomeReviews:CM000152_GR GO:GO:0050660 EMBL:AAFI02000024
eggNOG:COG0042 KO:K05542 GO:GO:0017150 PANTHER:PTHR11082
RefSeq:XP_641974.1 ProteinModelPortal:Q54XQ6 STRING:Q54XQ6
EnsemblProtists:DDB0238071 GeneID:8621706 KEGG:ddi:DDB_G0278803
OMA:QIARRGN Uniprot:Q54XQ6
Length = 435
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 76/318 (23%), Positives = 132/318 (41%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 128
P +VAPM+D T +R L R +YT M ++ + + + PE P+V
Sbjct: 52 PKKTVAPMVDHTFLAFRMLCRKYGADM-VYTPMFHSKNFATCKTYRRDYWSTCPEDRPLV 110
Query: 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD-PKFVGEAMS 187
+Q G+ + + KA + + D I+LN GCP ++A G +G S +LD P + +
Sbjct: 111 VQFCGNEPEWVVKAAKYIEDH-CDAIDLNLGCPQ-QIARRGNYG-SFLLDKPHIILPIVQ 167
Query: 188 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 247
+ + VP+ K R+ + + D +L + + T H +K +GI A
Sbjct: 168 ELHKHIKVPIFCKIRL-LPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKGHNSGI--ANW 224
Query: 248 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYT 306
+ I ++ + P + NG + ++++ L + GA VM NP +
Sbjct: 225 KAIRTIREQL------SIPVIA---NGSVVQYEDIDRCLEETGADGVMSAEGILANPSFF 275
Query: 307 LG-----------HVD-TAIYGAPSSGLTRRQVV----EKYQIYGDAILGTYGNNRPHVR 350
G ++D T IY S +TR + EK +Y D + T G H
Sbjct: 276 SGLKVPIYQVAREYIDFTEIYKT-SIHVTRSHIFKMLKEKLDVYSD-LRETMGAT--HTN 331
Query: 351 DVMKPLLHFFHSEPGNGL 368
D + ++ + N L
Sbjct: 332 DGFRDIITDLETREKNNL 349
>UNIPROTKB|G3N340 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
Ensembl:ENSBTAT00000063588 Uniprot:G3N340
Length = 475
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 59/236 (25%), Positives = 98/236 (41%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII----YQQGNLDRFLAFSPEQHPIV 128
VAPM+D ++ +R L+R H YT ML A+ + Y++ NL + PE P++
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAHL-CYTPMLHAQVFVRDANYRKENL--YCDVCPEDRPLI 77
Query: 129 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
+Q ++ + +A LA Y D I+LN GCP +A G +G L + + +
Sbjct: 78 VQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQ-MIAKRGHYGAFLQEEWDLLQRMRTW 135
Query: 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 248
PV+ K R+ + D + + K T H +K L+G +
Sbjct: 136 GHMVVGCPVTCKIRV-FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA----- 189
Query: 249 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303
+E+ A+ + F NG I + +V ++ G VM NP
Sbjct: 190 -----SWEHIKAVRKAVTIPVFA-NGNIQCLRDVERCIQDTGVQGVMSAEGNLHNP 239
>UNIPROTKB|J3QKP9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578176 Uniprot:J3QKP9
Length = 247
Score = 111 (44.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 73 VAPMMDWTDNHYRTLARLISKH-AWL-YTEMLAAETII----YQQGNLDRFLAFSPEQHP 126
VAPM+D ++ +R L+R +H A L YT ML A+ + Y++ NL + PE P
Sbjct: 21 VAPMVDQSELAWRLLSR---RHGAQLCYTPMLHAQVFVRDANYRKENL--YCEVCPEDRP 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCP 161
+++Q ++ + +A LA Y D I+LN GCP
Sbjct: 76 LIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCP 109
Score = 54 (24.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 33/137 (24%), Positives = 52/137 (37%)
Query: 170 CFGVSLMLD-PKFVGEAMSVIAANTNVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPT 227
C + L L P+ + A V+ A+ + V V C+I V + D + + K T
Sbjct: 99 CDAIDLNLGCPQMI--AKRVLLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLT 156
Query: 228 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287
H +K L+G + +E+ A+ + F NG I + +V LR
Sbjct: 157 VHGRTKEQKGPLSGAA----------SWEHIKAVRKAVAIPVFA-NGNIQCLQDVERCLR 205
Query: 288 K-GAHHVMVGRAAYQNP 303
G VM NP
Sbjct: 206 DTGVQGVMSAEGNLHNP 222
>UNIPROTKB|A6QPA8 [details] [associations]
symbol:DUS4L "DUS4L protein" species:9913 "Bos taurus"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 EMBL:DAAA02010587
EMBL:BC149229 IPI:IPI00866854 RefSeq:NP_001095407.1
UniGene:Bt.13512 STRING:A6QPA8 Ensembl:ENSBTAT00000029128
GeneID:511017 KEGG:bta:511017 InParanoid:A6QPA8 OMA:YLENEHK
NextBio:20869728 Uniprot:A6QPA8
Length = 238
Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 49/211 (23%), Positives = 85/211 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +RTL R YT M+ A + D + P+++Q
Sbjct: 32 APMVRYSKLSFRTLVRKYDCDL-CYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQFAA 90
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI---A 190
++ L+ A + Y + I++NCGCP G +G L+ P+ V + + +
Sbjct: 91 NDARLLSDAARIVCPYA-NGIDINCGCPQRWALAEG-YGACLINKPELVRDMVKQVRNQV 148
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
N VS+K RI HD + D K + + +H R E R
Sbjct: 149 ENPRFSVSIKIRI----HDDLTRTVDLCRKAEATGVS-WITVHGRTV--------EERH- 194
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281
P+ YE ++++ + NG I ++ E
Sbjct: 195 QPVHYEAI-KIIKESMSIPIVANGDIRSLKE 224
>UNIPROTKB|P33371 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U00007
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 PIR:C64982
RefSeq:NP_416645.1 RefSeq:YP_490379.1 ProteinModelPortal:P33371
SMR:P33371 DIP:DIP-12808N IntAct:P33371 PRIDE:P33371
EnsemblBacteria:EBESCT00000002162 EnsemblBacteria:EBESCT00000017846
GeneID:12931463 GeneID:945458 KEGG:ecj:Y75_p2102 KEGG:eco:b2140
PATRIC:32119623 EchoBASE:EB1957 EcoGene:EG12022
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI ProtClustDB:PRK10550
BioCyc:EcoCyc:EG12022-MONOMER BioCyc:ECOL316407:JW2128-MONOMER
BioCyc:MetaCyc:EG12022-MONOMER Genevestigator:P33371 Uniprot:P33371
Length = 315
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI--AANTN 194
+N A+A EL + + D LNCGCPS V G G G +L+ DP+ + + + A +
Sbjct: 79 ENAARAVELGS-WGVD---LNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAH 133
Query: 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235
+PVSVK R+G D + ++ D + + + ++H R
Sbjct: 134 LPVSVKVRLGWDSGEKKFEIADAVQQAGATE----LVVHGR 170
>UNIPROTKB|I3LP14 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000074907 OMA:YLENEHK EMBL:FP565643
Ensembl:ENSSSCT00000023658 Uniprot:I3LP14
Length = 237
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 49/211 (23%), Positives = 85/211 (40%)
Query: 74 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 133
APM+ ++ +RTL R S YT M+ A + D + P+++Q
Sbjct: 34 APMVRYSKLAFRTLVRKYSCDL-CYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAA 92
Query: 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI---A 190
++ L+ A + Y + I++NCGCP G +G L+ P+ V + + +
Sbjct: 93 NDARLLSDAARIVCPYA-NGIDINCGCPQRWALAEG-YGACLINKPELVKDMVKQVRNQV 150
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
N VS+K RI H + D K + + +H R E R
Sbjct: 151 ENPRFSVSIKIRI----HSDLTRTVDLCRKAEATGVS-WITVHGRTV--------EERH- 196
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281
P+ YE ++++ + NG I ++ E
Sbjct: 197 QPVHYEAI-KIIKESMSIPVIANGDIRSLKE 226
>UNIPROTKB|P54322 [details] [associations]
symbol:pyrDB "Dihydroorotate dehydrogenase B (NAD(+)),
catalytic subunit" species:416870 "Lactococcus lactis subsp.
cremoris MG1363" [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00224 InterPro:IPR001295 InterPro:IPR005720
InterPro:IPR012135 InterPro:IPR013785 InterPro:IPR024920
Pfam:PF01180 PIRSF:PIRSF000164 PROSITE:PS00911 PROSITE:PS00912
UniPathway:UPA00070 GO:GO:0005737 Gene3D:3.20.20.70 EMBL:AM406671
GenomeReviews:AM406671_GR GO:GO:0044205 GO:GO:0006207 GO:GO:0004158
TIGRFAMs:TIGR01037 eggNOG:COG0167 KO:K00226 HOGENOM:HOG000225105
ProtClustDB:PRK07259 GO:GO:0004589 EMBL:X74207
RefSeq:YP_001032420.1 PDB:1EP1 PDB:1EP2 PDB:1EP3 PDBsum:1EP1
PDBsum:1EP2 PDBsum:1EP3 ProteinModelPortal:P54322 SMR:P54322
IntAct:P54322 MINT:MINT-159259 STRING:P54322 GeneID:4798332
KEGG:llm:llmg_1106 PATRIC:22283360 OMA:PILANKT
EvolutionaryTrace:P54322 Uniprot:P54322
Length = 311
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 52/192 (27%), Positives = 81/192 (42%)
Query: 122 PEQHPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 180
PE PI+ + GS D +A ++ +A N I LN CP+ K G FG DP+
Sbjct: 97 PEL-PIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQA-FGT----DPE 150
Query: 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL-----CDFIYKVSSLSPTRHFIIHSR 235
+ A + VP+ VK V D + D + +++L R F + +R
Sbjct: 151 VAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVR-FDLKTR 209
Query: 236 KALLNGISPA-ENRTIPP--LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292
+ +L I+ I P LK + A + D P + GG+ +V GA
Sbjct: 210 QPILANITGGLSGPAIKPVALKLIHQVAQVVDIPIIGM---GGVANAQDVLEMYMAGASA 266
Query: 293 VMVGRAAYQNPW 304
V VG A + +P+
Sbjct: 267 VAVGTANFADPF 278
>POMBASE|SPCC777.15 [details] [associations]
symbol:SPCC777.15 "tRNA dihydrouridine synthase Dus4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISO] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
PomBase:SPCC777.15 GO:GO:0005739 EMBL:CU329672
GenomeReviews:CU329672_GR Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 PANTHER:PTHR11082
KO:K05545 OMA:AGPMVRY PIR:T11721 RefSeq:NP_588262.1
ProteinModelPortal:O74553 STRING:O74553 EnsemblFungi:SPCC777.15.1
GeneID:2538996 KEGG:spo:SPCC777.15 OrthoDB:EOG4PZNGJ
NextBio:20800171 Uniprot:O74553
Length = 326
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 40/142 (28%), Positives = 65/142 (45%)
Query: 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP-- 126
P APM+ ++ +R L R + +YT M+ A+ ++ +G R+ FS
Sbjct: 20 PVHIAAPMVRYSKLPFRQLVRDYNTDI-VYTPMILAKEFLHPKG---RYFDFSTNDADAS 75
Query: 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186
++LQ G + L KA +L Y D I +NCGCP G G +L+ +P+ V + +
Sbjct: 76 LILQFGVDDPVILEKAAQLVGPY-VDGIGINCGCPQTWAIQEG-IGSALLDEPEKVHKLV 133
Query: 187 SVIAANTNVP--VSVKCRIGVD 206
+ + VK RI D
Sbjct: 134 RAVKSTLGESFCTEVKIRIAKD 155
>POMBASE|SPAC16.04 [details] [associations]
symbol:dus3 "tRNA dihydrouridine synthase Dus3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=ISO] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 PomBase:SPAC16.04 GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05544
HOGENOM:HOG000240610 OrthoDB:EOG4M950K PIR:T37732
RefSeq:NP_594572.1 ProteinModelPortal:Q9UTH9 STRING:Q9UTH9
EnsemblFungi:SPAC16.04.1 GeneID:2541573 KEGG:spo:SPAC16.04
OMA:PWIFEEV NextBio:20802667 Uniprot:Q9UTH9
Length = 617
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 55/219 (25%), Positives = 90/219 (41%)
Query: 152 DEINLNCGCPSPKVAGHGCFGVSLMLDP-KFVGEAMSVIAANTNVPVSVKCRIG-VDDHD 209
D ++LNCGCP V G G SL+ +P + + + A + +PV+VK R+G DDH
Sbjct: 332 DFLDLNCGCPIDLVFRQGA-GSSLLENPGRLLRNLQGMDAVSGQIPVTVKLRMGNKDDHP 390
Query: 210 SYNQLCDFIYKVSSLSP-TRHFIIHSRKALLN------GISPAENRTIPPLKYEYYYALL 262
L I+ ++ S T H ++ N G ++ +++ E L
Sbjct: 391 VVKNLIGRIFNETNTSAATLHGRSRQQRYSKNANWDYIGEIASKVKSMNERIDELPEDSL 450
Query: 263 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL 322
R P L+ NG + + + KG VM+ R A PW ++ + S
Sbjct: 451 RTQP-LSLIGNGDCYSWQDWYDGVNKGVDTVMIARGALVKPWI-FEEIEARQF-IDKSST 507
Query: 323 TRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 361
R +++E+Y G G+ R + FFH
Sbjct: 508 QRLEMLEQYCNNGLEYWGSDSQGVNTTRRFFLEFMSFFH 546
>DICTYBASE|DDB_G0292686 [details] [associations]
symbol:dus3l "tRNA-dihydrouridine synthase 3-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
SMART:SM00356 dictyBase:DDB_G0292686 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:XP_629571.1
ProteinModelPortal:Q54CU9 STRING:Q54CU9 EnsemblProtists:DDB0238072
GeneID:8628832 KEGG:ddi:DDB_G0292686 KO:K05544 OMA:WGASAIT
ProtClustDB:CLSZ2495295 Uniprot:Q54CU9
Length = 671
Score = 122 (48.0 bits), Expect = 0.00034, P = 0.00034
Identities = 59/234 (25%), Positives = 100/234 (42%)
Query: 129 LQIGGSNLDNLAKATE-LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187
+QI GS +D K E + N + D +++N GCP V G G +LM PK V + +
Sbjct: 383 VQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGA-GAALMERPKKVEQLLR 441
Query: 188 VIAANTNVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 246
I+++ + P ++K RIG +D + ++L + + + + T H G S A+
Sbjct: 442 GISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLH-----------GRSRAQ 490
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQNPWY 305
+ L Y + + NG I N D VN +M+ R A PW
Sbjct: 491 RYS--RLANWDYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGALIKPWI 548
Query: 306 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHF 359
+ + +S R + + YG L +G++R V + K LL++
Sbjct: 549 FTEIKEKREWDISAS--ERLDFIRDFANYG---LDHWGSDRIGVDNTRKFLLNW 597
>WB|WBGene00009452 [details] [associations]
symbol:F36A2.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:Z81077 PIR:T21830
RefSeq:NP_492379.1 UniGene:Cel.26704 ProteinModelPortal:Q9XVN8
SMR:Q9XVN8 STRING:Q9XVN8 PaxDb:Q9XVN8 EnsemblMetazoa:F36A2.2
GeneID:185334 KEGG:cel:CELE_F36A2.2 UCSC:F36A2.2 CTD:185334
WormBase:F36A2.2 InParanoid:Q9XVN8 OMA:YLFASQP NextBio:927896
Uniprot:Q9XVN8
Length = 527
Score = 120 (47.3 bits), Expect = 0.00040, P = 0.00040
Identities = 42/170 (24%), Positives = 70/170 (41%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDR-FLAFSPEQHPIVLQI 131
+APM+D ++ +R R +T M+ A + G R LA P+V+Q
Sbjct: 77 LAPMVDQSELAFRMFTRKYGAQL-TFTPMIHAHLFV-NDGTYRRNSLALVKADRPLVVQF 134
Query: 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 191
+ +D A L D ++LN GCP VA G +G L + + E +S +
Sbjct: 135 CANKVDTFLAACRLVEDV-CDGVDLNLGCPQ-MVAKRGRYGSWLQDEVDLICEMVSAVRD 192
Query: 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 241
+P+S K R+ D Q ++ ++ T +H R + G
Sbjct: 193 YCRLPISCKIRV----RDDRQQTVEYAKRLVDAGATM-LTVHGRTRDMKG 237
>UNIPROTKB|Q884C6 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016853
GenomeReviews:AE016853_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
RefSeq:NP_791991.1 ProteinModelPortal:Q884C6 GeneID:1183820
KEGG:pst:PSPTO_2169 PATRIC:19995624 OMA:EWIARIQ
ProtClustDB:CLSK867771 BioCyc:PSYR223283:GJIX-2214-MONOMER
Uniprot:Q884C6
Length = 317
Score = 116 (45.9 bits), Expect = 0.00048, P = 0.00048
Identities = 55/241 (22%), Positives = 102/241 (42%)
Query: 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEML-AAETII-----YQQGNLDRFLAFSPEQH 125
++APM D+ R + W TE + +E ++ Y+ + A +
Sbjct: 4 ALAPMEGLVDDILRDALTKVGGIDWCVTEFIRVSERLMPAHYFYKYASEFHNGAKTDAGT 63
Query: 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 185
P+ LQ+ GS+ LA+ A ++LN GCP+ K G L+ +P+ +
Sbjct: 64 PLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPA-KTVNRSRGGAILLKEPELLHTI 122
Query: 186 MSVI--AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 243
+S + A ++PV+ K R+G ++ D D ++ ++H+R + +G
Sbjct: 123 VSQVRRAVPKDIPVTAKMRLGYENTDG---ALDCARALAD-GGAAQIVVHARTKV-DGYK 177
Query: 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQN 302
P P +E+ A +++ + NG I TV++ GA +M+GR
Sbjct: 178 P-------PAHWEWI-ARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRGLVAR 229
Query: 303 P 303
P
Sbjct: 230 P 230
>CGD|CAL0005565 [details] [associations]
symbol:orf19.1565 species:5476 "Candida albicans" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 83/315 (26%), Positives = 133/315 (42%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL--AFSPEQHPIVLQ 130
V+P+ + YR L + + Y+EM + +I Q N + L A E +Q
Sbjct: 249 VSPLTTVGNLPYRRLMKTLGADV-TYSEMALSVPLI-QGHNPEWALPKAHVSEYPGFGVQ 306
Query: 131 IGGSNLDNLAKATELA--NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
I S AKA E N + E+NLNCGCP + G G +L+ P + +S
Sbjct: 307 IASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQ-GSALLDQPSKLLRILSG 365
Query: 189 IAANT-NVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSLSPTRHFII----HSRKALLNG 241
+ A++ ++PV+VK R G+ + + + N + + + ++ + T H +S++A N
Sbjct: 366 MNASSGDIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKEADWNY 425
Query: 242 ISPAENRTIPPLKYEYYYALL--RDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRA 298
I AE T+ E RD + F NG + + ++ + G VMV R
Sbjct: 426 I--AEVGTVVKNWNEQQKEDKEGRDRDPVYFVGNGDVYSHEDWYEHVNTDGIDSVMVARG 483
Query: 299 AYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGT--YGNNRPHVRDVMKPL 356
A PW V+ Y SS R ++ K+ Y G+ YG R M
Sbjct: 484 ALIKPWI-FEEVEAQQYLDKSSS-ERLDILGKFAKYAIEHWGSDEYGVGLS--RRFMCEF 539
Query: 357 LHFFHSEPGNGLFKR 371
L F H G+ +R
Sbjct: 540 LSFTHRYIPVGIMER 554
>UNIPROTKB|Q5ALL3 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:237561 "Candida albicans SC5314" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 83/315 (26%), Positives = 133/315 (42%)
Query: 73 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL--AFSPEQHPIVLQ 130
V+P+ + YR L + + Y+EM + +I Q N + L A E +Q
Sbjct: 249 VSPLTTVGNLPYRRLMKTLGADV-TYSEMALSVPLI-QGHNPEWALPKAHVSEYPGFGVQ 306
Query: 131 IGGSNLDNLAKATELA--NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188
I S AKA E N + E+NLNCGCP + G G +L+ P + +S
Sbjct: 307 IASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQ-GSALLDQPSKLLRILSG 365
Query: 189 IAANT-NVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSLSPTRHFII----HSRKALLNG 241
+ A++ ++PV+VK R G+ + + + N + + + ++ + T H +S++A N
Sbjct: 366 MNASSGDIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKEADWNY 425
Query: 242 ISPAENRTIPPLKYEYYYALL--RDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRA 298
I AE T+ E RD + F NG + + ++ + G VMV R
Sbjct: 426 I--AEVGTVVKNWNEQQKEDKEGRDRDPVYFVGNGDVYSHEDWYEHVNTDGIDSVMVARG 483
Query: 299 AYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGT--YGNNRPHVRDVMKPL 356
A PW V+ Y SS R ++ K+ Y G+ YG R M
Sbjct: 484 ALIKPWI-FEEVEAQQYLDKSSS-ERLDILGKFAKYAIEHWGSDEYGVGLS--RRFMCEF 539
Query: 357 LHFFHSEPGNGLFKR 371
L F H G+ +R
Sbjct: 540 LSFTHRYIPVGIMER 554
>UNIPROTKB|F1NGP4 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AADN02072212 IPI:IPI00581852
Ensembl:ENSGALT00000002780 Uniprot:F1NGP4
Length = 630
Score = 120 (47.3 bits), Expect = 0.00052, P = 0.00052
Identities = 54/232 (23%), Positives = 94/232 (40%)
Query: 129 LQIGGSNLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187
+Q+ G+ D + K EL N + D +++N GCP V G G +LM + +
Sbjct: 344 VQLEGAFPDTMTKCAELLNQTIDVDFVDINVGCPIDLVYKKGG-GCALMTRSNKFEQIVR 402
Query: 188 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 247
+ + +VP++VK R GV + N I K+ + +H R E
Sbjct: 403 GMNSVLDVPLTVKIRTGVQE--KMNVAHKIIPKIREWGASM-VTLHGRSR--------EQ 451
Query: 248 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 307
R ++Y + + NG I + ++ N A++ G +M+ R A PW
Sbjct: 452 RYTRVADWDYIAECAKIASPMPLFGNGDILSYEDANQAMQTGVSGIMIARGALIKPWLFT 511
Query: 308 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHF 359
+ + SS R ++ + YG L +G++ V K LL +
Sbjct: 512 EIKEQRHWDISSS--ERFDILRDFTNYG---LEHWGSDTQGVEKTRKFLLEW 558
>UNIPROTKB|Q9KT00 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05541 OMA:FYHVARI PIR:D82241 RefSeq:NP_230750.1
ProteinModelPortal:Q9KT00 DNASU:2614375 GeneID:2614375
KEGG:vch:VC1105 PATRIC:20081304 ProtClustDB:CLSK874217
Uniprot:Q9KT00
Length = 323
Score = 114 (45.2 bits), Expect = 0.00083, P = 0.00083
Identities = 52/198 (26%), Positives = 88/198 (44%)
Query: 121 SPEQHPIVLQIGGSN----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM 176
+P P+ +Q+ G + +N +A EL AY D LN GCP+ K+ G +L+
Sbjct: 59 TPSGVPVKVQLLGQDPHWMAENAIRAAELG-AYGID---LNFGCPA-KMVNQSKGGAALL 113
Query: 177 LDPKFVGEAMSVI--AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234
P+ + + + A ++PVS K R+G +D + ++ D + + + T +H+
Sbjct: 114 QHPELIYQVVKACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELT----VHA 169
Query: 235 R-KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVNAALRKGAHH 292
R KA G +E +K+ +Y +R + NG + N D G
Sbjct: 170 RTKA--GGYKASE------IKW-HYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDS 220
Query: 293 VMVGRAAYQNPWYTLGHV 310
+MV R A P LG+V
Sbjct: 221 LMVCRGALNVP--NLGNV 236
>TIGR_CMR|VC_1105 [details] [associations]
symbol:VC_1105 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05541 OMA:FYHVARI
PIR:D82241 RefSeq:NP_230750.1 ProteinModelPortal:Q9KT00
DNASU:2614375 GeneID:2614375 KEGG:vch:VC1105 PATRIC:20081304
ProtClustDB:CLSK874217 Uniprot:Q9KT00
Length = 323
Score = 114 (45.2 bits), Expect = 0.00083, P = 0.00083
Identities = 52/198 (26%), Positives = 88/198 (44%)
Query: 121 SPEQHPIVLQIGGSN----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM 176
+P P+ +Q+ G + +N +A EL AY D LN GCP+ K+ G +L+
Sbjct: 59 TPSGVPVKVQLLGQDPHWMAENAIRAAELG-AYGID---LNFGCPA-KMVNQSKGGAALL 113
Query: 177 LDPKFVGEAMSVI--AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234
P+ + + + A ++PVS K R+G +D + ++ D + + + T +H+
Sbjct: 114 QHPELIYQVVKACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELT----VHA 169
Query: 235 R-KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVNAALRKGAHH 292
R KA G +E +K+ +Y +R + NG + N D G
Sbjct: 170 RTKA--GGYKASE------IKW-HYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDS 220
Query: 293 VMVGRAAYQNPWYTLGHV 310
+MV R A P LG+V
Sbjct: 221 LMVCRGALNVP--NLGNV 236
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 436 424 0.00084 118 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 612 (65 KB)
Total size of DFA: 275 KB (2145 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.01u 0.14s 33.15t Elapsed: 00:00:01
Total cpu time: 33.03u 0.14s 33.17t Elapsed: 00:00:01
Start: Tue May 21 07:59:28 2013 End: Tue May 21 07:59:29 2013