Query 013789
Match_columns 436
No_of_seqs 343 out of 2510
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00742 yjbN tRNA dihydrouri 100.0 1.6E-63 3.4E-68 496.6 33.5 318 69-396 1-318 (318)
2 COG0042 tRNA-dihydrouridine sy 100.0 6E-63 1.3E-67 493.4 32.9 315 60-391 2-318 (323)
3 PRK11815 tRNA-dihydrouridine s 100.0 1.6E-60 3.5E-65 479.1 34.3 323 67-400 9-332 (333)
4 PRK10415 tRNA-dihydrouridine s 100.0 1.5E-59 3.2E-64 469.8 33.5 315 61-392 2-318 (321)
5 PRK10550 tRNA-dihydrouridine s 100.0 3.5E-59 7.5E-64 464.6 32.1 293 70-386 2-303 (312)
6 PF01207 Dus: Dihydrouridine s 100.0 3.4E-59 7.4E-64 465.1 18.0 301 72-388 1-302 (309)
7 TIGR00737 nifR3_yhdG putative 100.0 2.2E-55 4.7E-60 440.2 33.4 314 62-392 1-316 (319)
8 KOG2335 tRNA-dihydrouridine sy 100.0 2.2E-55 4.8E-60 430.6 26.7 327 72-427 22-357 (358)
9 KOG2333 Uncharacterized conser 100.0 1.1E-43 2.3E-48 355.1 26.3 288 58-362 254-549 (614)
10 cd02801 DUS_like_FMN Dihydrour 100.0 5.7E-42 1.2E-46 327.2 24.2 223 70-307 1-224 (231)
11 cd02911 arch_FMN Archeal FMN-b 100.0 1.8E-38 4E-43 304.0 19.8 211 70-310 1-231 (233)
12 TIGR01037 pyrD_sub1_fam dihydr 100.0 1E-33 2.2E-38 281.2 21.9 229 61-307 4-274 (300)
13 cd04734 OYE_like_3_FMN Old yel 100.0 3.4E-33 7.4E-38 282.2 23.9 248 58-308 3-327 (343)
14 PRK13523 NADPH dehydrogenase N 100.0 2.5E-32 5.4E-37 274.8 22.3 244 58-309 5-318 (337)
15 TIGR00736 nifR3_rel_arch TIM-b 100.0 4.2E-32 9.1E-37 258.2 20.4 206 76-302 1-226 (231)
16 cd04733 OYE_like_2_FMN Old yel 100.0 4.5E-31 9.8E-36 266.5 23.0 244 58-308 3-334 (338)
17 cd02931 ER_like_FMN Enoate red 100.0 1.2E-30 2.6E-35 267.2 23.8 247 58-308 3-347 (382)
18 cd04735 OYE_like_4_FMN Old yel 100.0 6.7E-31 1.4E-35 266.6 21.7 243 58-308 3-325 (353)
19 cd02803 OYE_like_FMN_family Ol 100.0 7.1E-31 1.5E-35 263.7 21.1 247 58-307 2-322 (327)
20 cd04740 DHOD_1B_like Dihydroor 100.0 2.7E-30 6E-35 256.2 24.4 228 61-307 3-271 (296)
21 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 2.1E-30 4.5E-35 263.1 22.6 247 58-309 3-319 (353)
22 cd02933 OYE_like_FMN Old yello 100.0 3.4E-30 7.4E-35 259.7 23.4 236 58-308 4-326 (338)
23 cd02932 OYE_YqiM_FMN Old yello 100.0 1E-29 2.2E-34 256.6 23.5 242 58-307 3-331 (336)
24 cd02940 DHPD_FMN Dihydropyrimi 100.0 1.8E-29 4E-34 250.7 23.0 232 61-307 5-293 (299)
25 cd02929 TMADH_HD_FMN Trimethyl 100.0 1.7E-29 3.6E-34 257.7 22.5 245 58-309 10-332 (370)
26 cd04747 OYE_like_5_FMN Old yel 100.0 1.7E-29 3.7E-34 255.9 22.4 239 58-308 3-340 (361)
27 COG1902 NemA NADH:flavin oxido 100.0 6.5E-29 1.4E-33 251.0 23.0 245 58-308 8-330 (363)
28 KOG2334 tRNA-dihydrouridine sy 100.0 1.6E-28 3.5E-33 243.7 22.7 270 62-357 4-293 (477)
29 PRK08255 salicylyl-CoA 5-hydro 100.0 1.1E-28 2.4E-33 273.2 23.8 246 58-312 401-733 (765)
30 PRK07259 dihydroorotate dehydr 100.0 4.4E-28 9.4E-33 241.1 25.2 229 61-307 5-274 (301)
31 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 1.2E-27 2.6E-32 236.3 22.4 232 62-308 3-285 (289)
32 PRK08318 dihydropyrimidine deh 100.0 3E-27 6.6E-32 245.3 22.7 230 61-306 7-293 (420)
33 cd04741 DHOD_1A_like Dihydroor 100.0 2.3E-26 5.1E-31 227.9 24.4 229 62-307 3-284 (294)
34 PF00724 Oxidored_FMN: NADH:fl 99.9 1.8E-27 3.8E-32 240.6 16.5 248 58-308 4-333 (341)
35 PRK10605 N-ethylmaleimide redu 99.9 3.2E-26 7E-31 232.8 23.6 237 58-309 5-334 (362)
36 PLN02411 12-oxophytodienoate r 99.9 4E-26 8.7E-31 234.2 23.3 246 58-308 14-354 (391)
37 cd04738 DHOD_2_like Dihydrooro 99.9 1.3E-24 2.9E-29 218.4 22.7 230 60-307 41-321 (327)
38 cd04739 DHOD_like Dihydroorota 99.9 4.3E-24 9.3E-29 214.5 24.2 226 61-306 5-277 (325)
39 PRK05286 dihydroorotate dehydr 99.9 2.3E-24 5.1E-29 218.0 21.3 230 59-307 50-330 (344)
40 PRK07565 dihydroorotate dehydr 99.9 1.6E-23 3.4E-28 211.3 23.6 227 61-306 6-279 (334)
41 cd02809 alpha_hydroxyacid_oxid 99.9 2.9E-22 6.3E-27 199.2 20.9 196 61-300 57-260 (299)
42 PLN02495 oxidoreductase, actin 99.9 3.6E-22 7.8E-27 203.2 21.3 235 61-306 14-310 (385)
43 PRK02506 dihydroorotate dehydr 99.9 2.8E-21 6.1E-26 192.9 21.9 230 61-306 5-281 (310)
44 COG0167 PyrD Dihydroorotate de 99.9 7.5E-21 1.6E-25 187.5 21.3 227 62-306 6-281 (310)
45 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 1.8E-21 3.8E-26 197.1 17.0 184 60-301 36-221 (369)
46 TIGR01036 pyrD_sub2 dihydrooro 99.9 1.8E-20 4E-25 188.7 19.2 229 61-307 49-329 (335)
47 PF01180 DHO_dh: Dihydroorotat 99.8 1.5E-19 3.3E-24 179.3 16.0 228 62-306 6-284 (295)
48 PRK05437 isopentenyl pyrophosp 99.8 5.5E-19 1.2E-23 179.2 19.6 216 62-302 54-296 (352)
49 PLN02826 dihydroorotate dehydr 99.8 1.6E-18 3.5E-23 178.1 20.9 230 59-306 75-381 (409)
50 cd02811 IDI-2_FMN Isopentenyl- 99.8 8.8E-19 1.9E-23 176.1 18.4 216 62-301 46-289 (326)
51 TIGR03151 enACPred_II putative 99.8 1.4E-18 3.1E-23 173.1 18.8 194 63-305 6-199 (307)
52 TIGR02151 IPP_isom_2 isopenten 99.8 1.4E-18 3.1E-23 175.1 18.2 215 62-302 47-289 (333)
53 PF03060 NMO: Nitronate monoox 99.7 9.2E-17 2E-21 161.9 18.2 198 63-305 6-228 (330)
54 PRK08649 inosine 5-monophospha 99.7 3.8E-17 8.3E-22 166.0 14.3 180 60-299 39-218 (368)
55 cd04730 NPD_like 2-Nitropropan 99.7 5.6E-16 1.2E-20 148.5 18.8 192 68-305 2-194 (236)
56 cd00381 IMPDH IMPDH: The catal 99.7 9.4E-16 2E-20 154.1 20.7 204 63-305 29-235 (325)
57 cd04743 NPD_PKS 2-Nitropropane 99.6 2.2E-15 4.8E-20 149.6 14.6 191 68-305 2-211 (320)
58 cd04742 NPD_FabD 2-Nitropropan 99.6 1E-14 2.2E-19 149.5 18.4 213 62-305 7-257 (418)
59 COG2070 Dioxygenases related t 99.6 1.3E-14 2.7E-19 146.2 15.3 201 62-305 8-222 (336)
60 PRK04180 pyridoxal biosynthesi 99.6 4E-15 8.7E-20 144.0 9.6 147 140-304 27-242 (293)
61 TIGR02814 pfaD_fam PfaD family 99.6 7.7E-14 1.7E-18 143.9 19.0 210 62-305 12-262 (444)
62 cd04722 TIM_phosphate_binding 99.5 2.1E-12 4.7E-17 118.2 19.7 193 71-297 1-200 (200)
63 PRK06843 inosine 5-monophospha 99.5 7.4E-13 1.6E-17 135.5 18.0 207 63-303 37-292 (404)
64 TIGR02708 L_lactate_ox L-lacta 99.5 2.4E-12 5.3E-17 130.5 19.2 208 63-301 75-317 (367)
65 cd04737 LOX_like_FMN L-Lactate 99.5 1.2E-12 2.6E-17 132.4 16.9 211 62-303 66-312 (351)
66 cd02922 FCB2_FMN Flavocytochro 99.5 3.3E-12 7.2E-17 129.1 20.1 215 62-304 58-308 (344)
67 PRK05458 guanosine 5'-monophos 99.4 1.3E-11 2.8E-16 123.5 19.9 196 62-303 31-237 (326)
68 cd02808 GltS_FMN Glutamate syn 99.4 7.1E-12 1.5E-16 129.2 18.5 209 63-301 72-319 (392)
69 PRK14024 phosphoribosyl isomer 99.4 8.8E-13 1.9E-17 127.3 10.4 121 171-305 103-231 (241)
70 TIGR01306 GMP_reduct_2 guanosi 99.3 3.1E-10 6.7E-15 113.2 21.5 197 62-302 28-233 (321)
71 PTZ00314 inosine-5'-monophosph 99.3 2.2E-10 4.8E-15 121.3 19.8 133 135-304 239-381 (495)
72 cd04736 MDH_FMN Mandelate dehy 99.3 2.4E-10 5.3E-15 115.8 18.5 207 62-301 58-323 (361)
73 PRK01033 imidazole glycerol ph 99.2 1.4E-10 3.1E-15 113.1 14.1 183 83-303 34-233 (258)
74 PRK11197 lldD L-lactate dehydr 99.2 7.3E-10 1.6E-14 113.0 18.5 210 62-301 64-334 (381)
75 cd03332 LMO_FMN L-Lactate 2-mo 99.2 9.7E-10 2.1E-14 112.3 19.3 210 62-300 79-341 (383)
76 PLN02535 glycolate oxidase 99.2 9.8E-10 2.1E-14 111.6 19.2 213 62-304 66-315 (364)
77 PF01070 FMN_dh: FMN-dependent 99.2 1.6E-10 3.5E-15 117.5 13.3 208 61-301 51-314 (356)
78 PF00478 IMPDH: IMP dehydrogen 99.2 4.1E-10 8.8E-15 113.5 15.7 202 63-303 32-247 (352)
79 PLN02274 inosine-5'-monophosph 99.2 2.3E-09 5E-14 113.7 22.0 138 136-304 247-388 (505)
80 KOG1436 Dihydroorotate dehydro 99.2 7.6E-10 1.7E-14 107.6 16.3 230 62-310 88-374 (398)
81 PLN02979 glycolate oxidase 99.2 2.1E-09 4.5E-14 108.5 19.0 209 62-301 63-312 (366)
82 cd04731 HisF The cyclase subun 99.2 4.8E-10 1E-14 108.2 14.0 190 80-303 28-230 (243)
83 PLN02493 probable peroxisomal 99.1 2.2E-09 4.7E-14 109.0 17.7 210 62-301 64-313 (367)
84 TIGR00007 phosphoribosylformim 99.1 1.6E-09 3.5E-14 103.6 15.9 145 124-302 72-224 (230)
85 TIGR03572 WbuZ glycosyl amidat 99.1 7.6E-10 1.6E-14 106.1 13.6 187 80-300 31-231 (232)
86 cd04732 HisA HisA. Phosphorib 99.1 5.3E-10 1.1E-14 107.0 12.4 145 127-304 74-227 (234)
87 TIGR01305 GMP_reduct_1 guanosi 99.1 9.3E-09 2E-13 102.2 21.4 196 63-301 40-246 (343)
88 KOG0134 NADH:flavin oxidoreduc 99.1 5.3E-10 1.2E-14 112.9 12.0 172 137-310 174-362 (400)
89 PRK00748 1-(5-phosphoribosyl)- 99.1 5E-10 1.1E-14 107.2 10.7 118 171-302 102-226 (233)
90 PRK13585 1-(5-phosphoribosyl)- 99.0 3.9E-09 8.4E-14 101.7 14.9 147 127-306 77-232 (241)
91 PRK05096 guanosine 5'-monophos 99.0 1.4E-08 3E-13 101.0 18.0 192 67-303 45-249 (346)
92 PRK02083 imidazole glycerol ph 99.0 5.8E-09 1.2E-13 101.4 14.5 139 129-302 77-233 (253)
93 TIGR00343 pyridoxal 5'-phospha 99.0 6.9E-09 1.5E-13 100.7 14.7 144 141-303 21-235 (287)
94 PRK05567 inosine 5'-monophosph 99.0 4.7E-08 1E-12 103.7 21.1 110 180-302 254-366 (486)
95 TIGR01302 IMP_dehydrog inosine 98.9 4.6E-08 9.9E-13 102.8 19.2 134 136-306 223-366 (450)
96 TIGR01303 IMP_DH_rel_1 IMP deh 98.9 2.5E-07 5.5E-12 97.5 21.3 108 178-302 249-363 (475)
97 PRK07807 inosine 5-monophospha 98.8 2.9E-07 6.2E-12 97.2 20.0 109 180-304 253-367 (479)
98 COG0106 HisA Phosphoribosylfor 98.8 8.7E-08 1.9E-12 91.2 13.4 149 125-304 74-229 (241)
99 TIGR00735 hisF imidazoleglycer 98.8 4.1E-08 8.9E-13 95.6 11.2 184 83-302 34-235 (254)
100 cd04727 pdxS PdxS is a subunit 98.8 1.7E-07 3.8E-12 91.0 14.3 146 141-304 19-233 (283)
101 KOG1799 Dihydropyrimidine dehy 98.8 7.9E-09 1.7E-13 101.6 5.0 157 135-304 216-393 (471)
102 COG1304 idi Isopentenyl diphos 98.7 7.4E-08 1.6E-12 97.8 12.2 104 177-301 201-307 (360)
103 PF04131 NanE: Putative N-acet 98.7 1.6E-07 3.4E-12 86.4 12.3 127 143-309 57-185 (192)
104 cd00945 Aldolase_Class_I Class 98.7 1.8E-06 3.9E-11 79.6 18.5 147 124-296 48-201 (201)
105 cd04728 ThiG Thiazole synthase 98.7 1.5E-06 3.2E-11 83.1 17.8 204 61-301 2-209 (248)
106 cd04729 NanE N-acetylmannosami 98.7 3.9E-07 8.4E-12 86.7 13.9 130 142-305 84-215 (219)
107 PRK13125 trpA tryptophan synth 98.7 6.1E-07 1.3E-11 86.9 15.5 155 134-301 15-219 (244)
108 PRK02083 imidazole glycerol ph 98.7 7.3E-08 1.6E-12 93.7 9.1 80 219-308 36-115 (253)
109 KOG0538 Glycolate oxidase [Ene 98.7 1.4E-06 3E-11 84.9 17.1 209 62-302 62-313 (363)
110 cd04731 HisF The cyclase subun 98.6 9.6E-08 2.1E-12 92.2 8.9 80 219-308 33-112 (243)
111 COG0214 SNZ1 Pyridoxine biosyn 98.6 1.5E-07 3.3E-12 88.2 9.4 145 141-303 31-244 (296)
112 PRK00208 thiG thiazole synthas 98.6 2.6E-06 5.7E-11 81.5 17.2 203 60-301 2-209 (250)
113 cd00331 IGPS Indole-3-glycerol 98.6 2.8E-06 6E-11 80.6 17.6 138 124-305 72-210 (217)
114 TIGR01304 IMP_DH_rel_2 IMP deh 98.5 1.2E-06 2.5E-11 89.6 13.8 143 135-304 140-292 (369)
115 cd04732 HisA HisA. Phosphorib 98.5 3.8E-07 8.3E-12 87.2 9.2 80 219-308 35-114 (234)
116 PRK01130 N-acetylmannosamine-6 98.5 1.8E-06 3.9E-11 82.2 13.4 129 142-305 80-210 (221)
117 PRK00278 trpC indole-3-glycero 98.5 2.9E-06 6.3E-11 83.0 14.6 52 254-305 197-249 (260)
118 PRK08649 inosine 5-monophospha 98.5 4.2E-06 9.1E-11 85.6 16.3 144 135-304 139-293 (368)
119 PF01645 Glu_synthase: Conserv 98.5 7.3E-07 1.6E-11 90.7 9.8 112 177-301 185-308 (368)
120 TIGR00735 hisF imidazoleglycer 98.4 7.9E-07 1.7E-11 86.6 9.0 79 219-307 36-114 (254)
121 KOG1606 Stationary phase-induc 98.4 1.5E-06 3.2E-11 80.5 9.6 143 141-305 32-247 (296)
122 cd03319 L-Ala-DL-Glu_epimerase 98.4 1.4E-05 3E-10 80.2 17.3 137 121-296 120-258 (316)
123 PLN02446 (5-phosphoribosyl)-5- 98.4 6.3E-06 1.4E-10 80.1 13.9 144 125-300 82-242 (262)
124 PRK07107 inosine 5-monophospha 98.2 1.8E-05 3.9E-10 84.2 13.3 133 138-303 242-388 (502)
125 PRK13587 1-(5-phosphoribosyl)- 98.2 1.5E-05 3.2E-10 76.8 11.5 144 127-301 77-226 (234)
126 TIGR01919 hisA-trpF 1-(5-phosp 98.2 1.4E-05 2.9E-10 77.5 11.1 146 126-303 74-232 (243)
127 CHL00162 thiG thiamin biosynth 98.2 0.0003 6.5E-09 67.5 19.4 211 58-304 6-226 (267)
128 PF00977 His_biosynth: Histidi 98.1 1.1E-05 2.3E-10 77.5 9.6 144 126-302 73-226 (229)
129 TIGR00262 trpA tryptophan synt 98.1 0.00014 3E-09 71.0 17.2 167 126-300 11-231 (256)
130 PRK14114 1-(5-phosphoribosyl)- 98.1 1.5E-05 3.4E-10 77.0 10.0 145 127-303 74-230 (241)
131 TIGR00734 hisAF_rel hisA/hisF 98.1 3.9E-05 8.6E-10 73.2 12.1 107 172-301 108-218 (221)
132 PF05690 ThiG: Thiazole biosyn 98.1 0.00054 1.2E-08 65.1 19.4 208 61-304 1-212 (247)
133 TIGR00259 thylakoid_BtpA membr 98.1 0.00014 3.1E-09 70.7 15.9 203 75-303 22-234 (257)
134 TIGR01949 AroFGH_arch predicte 98.1 0.00025 5.4E-09 69.2 17.5 150 123-305 69-236 (258)
135 PRK00507 deoxyribose-phosphate 98.1 0.00014 3E-09 69.4 15.1 135 137-299 74-211 (221)
136 KOG2550 IMP dehydrogenase/GMP 98.0 7.6E-05 1.6E-09 75.6 13.6 63 221-296 258-320 (503)
137 PRK00748 1-(5-phosphoribosyl)- 98.0 3.3E-05 7.2E-10 73.8 10.7 79 219-307 36-114 (233)
138 COG2022 ThiG Uncharacterized e 98.0 0.0011 2.4E-08 62.7 20.0 206 58-300 6-215 (262)
139 TIGR01163 rpe ribulose-phospha 98.0 0.00012 2.7E-09 68.6 13.9 152 129-305 3-202 (210)
140 cd00958 DhnA Class I fructose- 98.0 0.00033 7.2E-09 67.2 16.3 138 135-304 74-222 (235)
141 COG3010 NanE Putative N-acetyl 98.0 0.00017 3.7E-09 67.0 13.2 73 221-304 142-216 (229)
142 PRK13585 1-(5-phosphoribosyl)- 97.9 4.1E-05 8.9E-10 73.7 8.9 77 221-307 40-116 (241)
143 PRK07695 transcriptional regul 97.9 0.00022 4.8E-09 66.9 13.6 75 222-304 111-185 (201)
144 CHL00200 trpA tryptophan synth 97.9 0.0005 1.1E-08 67.4 16.5 167 126-301 16-236 (263)
145 PRK13586 1-(5-phosphoribosyl)- 97.9 0.00011 2.4E-09 70.7 11.6 140 128-302 75-224 (232)
146 TIGR03572 WbuZ glycosyl amidat 97.9 5.4E-05 1.2E-09 72.6 9.2 79 219-307 36-114 (232)
147 cd04724 Tryptophan_synthase_al 97.9 0.00054 1.2E-08 66.3 15.8 156 134-301 11-220 (242)
148 TIGR01769 GGGP geranylgeranylg 97.9 0.00065 1.4E-08 64.0 15.8 43 253-296 163-205 (205)
149 PF03437 BtpA: BtpA family; I 97.9 0.00026 5.6E-09 68.8 13.2 204 75-305 23-236 (254)
150 COG0107 HisF Imidazoleglycerol 97.8 5.7E-05 1.2E-09 71.3 8.1 79 219-307 36-114 (256)
151 TIGR03128 RuMP_HxlA 3-hexulose 97.8 0.0026 5.6E-08 59.6 19.2 186 78-304 8-194 (206)
152 TIGR02129 hisA_euk phosphoribo 97.8 0.00041 9E-09 67.3 13.6 143 126-301 76-237 (253)
153 PRK11750 gltB glutamate syntha 97.8 0.00021 4.5E-09 83.1 13.2 113 178-301 979-1101(1485)
154 PRK04128 1-(5-phosphoribosyl)- 97.8 7E-05 1.5E-09 71.9 8.0 77 221-310 38-114 (228)
155 cd00452 KDPG_aldolase KDPG and 97.8 0.00072 1.6E-08 62.9 14.1 147 125-300 4-175 (190)
156 PLN02591 tryptophan synthase 97.8 0.0011 2.3E-08 64.5 15.7 163 134-301 13-223 (250)
157 cd04723 HisA_HisF Phosphoribos 97.8 0.00015 3.3E-09 69.7 9.8 183 82-303 38-225 (233)
158 PRK13111 trpA tryptophan synth 97.7 0.0012 2.7E-08 64.4 16.0 167 126-301 13-233 (258)
159 cd00429 RPE Ribulose-5-phospha 97.7 0.0011 2.5E-08 61.9 15.3 38 267-305 166-203 (211)
160 cd00405 PRAI Phosphoribosylant 97.7 0.0013 2.8E-08 61.8 15.3 182 77-305 4-190 (203)
161 cd03316 MR_like Mandelate race 97.7 0.0014 3.1E-08 66.7 16.5 140 123-295 125-269 (357)
162 PRK14024 phosphoribosyl isomer 97.7 0.00016 3.4E-09 69.9 8.5 78 219-307 38-115 (241)
163 TIGR00126 deoC deoxyribose-pho 97.6 0.0011 2.4E-08 62.9 13.6 137 136-298 69-206 (211)
164 TIGR00007 phosphoribosylformim 97.6 0.00024 5.3E-09 67.8 9.2 79 219-307 34-112 (230)
165 PRK04128 1-(5-phosphoribosyl)- 97.6 0.00027 5.8E-09 67.9 9.1 132 127-302 74-217 (228)
166 PLN02334 ribulose-phosphate 3- 97.6 0.0039 8.4E-08 59.8 16.8 147 123-305 64-211 (229)
167 cd03315 MLE_like Muconate lact 97.6 0.0044 9.6E-08 60.5 17.5 134 123-295 73-209 (265)
168 cd00377 ICL_PEPM Members of th 97.6 0.011 2.4E-07 57.3 19.7 202 76-301 13-231 (243)
169 cd00959 DeoC 2-deoxyribose-5-p 97.6 0.003 6.5E-08 59.4 15.3 132 136-293 68-200 (203)
170 PRK13587 1-(5-phosphoribosyl)- 97.6 0.00031 6.6E-09 67.7 8.6 81 219-310 37-118 (234)
171 PRK11840 bifunctional sulfur c 97.5 0.0055 1.2E-07 61.3 17.4 209 58-303 73-285 (326)
172 PF04481 DUF561: Protein of un 97.5 0.0014 3.1E-08 61.4 12.3 153 123-299 60-217 (242)
173 PRK07226 fructose-bisphosphate 97.5 0.0024 5.3E-08 62.6 14.8 148 124-304 73-239 (267)
174 COG0434 SgcQ Predicted TIM-bar 97.5 0.0086 1.9E-07 57.1 17.2 196 81-303 34-239 (263)
175 PTZ00170 D-ribulose-5-phosphat 97.5 0.0056 1.2E-07 58.7 16.2 153 126-304 8-209 (228)
176 PRK13307 bifunctional formalde 97.5 0.015 3.2E-07 60.1 20.2 190 69-304 172-366 (391)
177 PRK08883 ribulose-phosphate 3- 97.4 0.0053 1.2E-07 58.6 15.4 151 127-304 2-203 (220)
178 PRK09140 2-dehydro-3-deoxy-6-p 97.4 0.0072 1.6E-07 57.1 16.1 152 124-303 9-186 (206)
179 PRK01033 imidazole glycerol ph 97.4 0.00061 1.3E-08 66.6 9.0 79 219-307 36-114 (258)
180 PRK13957 indole-3-glycerol-pho 97.4 0.0029 6.3E-08 61.3 13.1 147 141-305 65-239 (247)
181 PF00977 His_biosynth: Histidi 97.4 0.00036 7.8E-09 67.0 6.7 79 219-307 35-113 (229)
182 PF00218 IGPS: Indole-3-glycer 97.4 0.00085 1.8E-08 65.3 9.1 150 139-305 70-247 (254)
183 PRK00043 thiE thiamine-phospha 97.3 0.0014 3E-08 61.5 9.8 75 224-304 122-196 (212)
184 PRK05581 ribulose-phosphate 3- 97.3 0.0052 1.1E-07 58.0 13.8 157 127-305 6-207 (220)
185 PRK06552 keto-hydroxyglutarate 97.3 0.012 2.7E-07 55.9 16.1 150 123-300 11-187 (213)
186 TIGR01182 eda Entner-Doudoroff 97.3 0.004 8.7E-08 58.7 12.6 156 123-305 6-185 (204)
187 TIGR02317 prpB methylisocitrat 97.3 0.043 9.2E-07 54.5 20.0 206 70-301 13-234 (285)
188 COG0159 TrpA Tryptophan syntha 97.3 0.02 4.4E-07 55.8 17.2 170 126-301 18-238 (265)
189 PRK07455 keto-hydroxyglutarate 97.3 0.0066 1.4E-07 56.5 13.5 149 123-301 10-185 (187)
190 PRK14114 1-(5-phosphoribosyl)- 97.3 0.00089 1.9E-08 64.8 7.9 80 219-310 36-115 (241)
191 TIGR00693 thiE thiamine-phosph 97.2 0.002 4.4E-08 59.8 9.9 76 223-304 113-188 (196)
192 cd04726 KGPDC_HPS 3-Keto-L-gul 97.2 0.019 4E-07 53.5 16.4 141 124-304 53-194 (202)
193 PRK08227 autoinducer 2 aldolas 97.2 0.023 5E-07 55.7 17.5 188 67-304 29-234 (264)
194 COG0069 GltB Glutamate synthas 97.2 0.0018 3.8E-08 68.0 10.2 113 178-301 286-408 (485)
195 PRK06806 fructose-bisphosphate 97.2 0.032 7E-07 55.2 18.2 76 221-304 161-238 (281)
196 cd00564 TMP_TenI Thiamine mono 97.2 0.0022 4.8E-08 58.8 9.5 75 223-304 112-186 (196)
197 TIGR02129 hisA_euk phosphoribo 97.2 0.0013 2.8E-08 63.8 8.0 68 219-303 44-111 (253)
198 PRK04302 triosephosphate isome 97.2 0.015 3.2E-07 55.5 15.1 134 142-305 77-211 (223)
199 PRK11320 prpB 2-methylisocitra 97.2 0.072 1.6E-06 53.0 20.2 207 69-301 16-239 (292)
200 cd02812 PcrB_like PcrB_like pr 97.1 0.0026 5.7E-08 60.5 9.2 74 219-306 141-214 (219)
201 PRK13802 bifunctional indole-3 97.1 0.0062 1.3E-07 67.2 12.8 149 140-305 73-249 (695)
202 PRK07028 bifunctional hexulose 97.0 0.017 3.6E-07 60.7 15.3 127 142-305 73-199 (430)
203 TIGR01919 hisA-trpF 1-(5-phosp 97.0 0.0025 5.4E-08 61.8 8.3 78 219-307 37-114 (243)
204 COG0134 TrpC Indole-3-glycerol 97.0 0.013 2.8E-07 56.8 13.1 148 141-305 70-245 (254)
205 PLN02460 indole-3-glycerol-pho 97.0 0.013 2.9E-07 59.0 13.7 150 139-305 141-326 (338)
206 cd06556 ICL_KPHMT Members of t 97.0 0.034 7.4E-07 53.8 16.0 157 76-275 16-199 (240)
207 PRK05283 deoxyribose-phosphate 97.0 0.021 4.5E-07 55.7 14.3 140 136-305 82-226 (257)
208 PRK04169 geranylgeranylglycery 97.0 0.0015 3.3E-08 62.7 6.4 50 254-304 171-221 (232)
209 TIGR01768 GGGP-family geranylg 97.0 0.0013 2.8E-08 62.8 5.8 53 254-306 166-218 (223)
210 PF01791 DeoC: DeoC/LacD famil 97.0 0.006 1.3E-07 58.7 10.4 139 140-301 79-235 (236)
211 TIGR02319 CPEP_Pphonmut carbox 96.9 0.13 2.8E-06 51.3 19.9 202 76-301 20-238 (294)
212 PLN02617 imidazole glycerol ph 96.9 0.011 2.4E-07 63.5 12.9 141 141-298 338-514 (538)
213 PRK06015 keto-hydroxyglutarate 96.9 0.02 4.4E-07 53.9 13.1 153 124-303 3-179 (201)
214 COG0269 SgbH 3-hexulose-6-phos 96.9 0.011 2.4E-07 55.7 11.1 152 114-304 47-200 (217)
215 PF00290 Trp_syntA: Tryptophan 96.9 0.011 2.3E-07 57.9 11.5 166 127-301 12-231 (259)
216 PRK07114 keto-hydroxyglutarate 96.9 0.015 3.2E-07 55.6 12.2 156 123-305 13-197 (222)
217 COG0274 DeoC Deoxyribose-phosp 96.9 0.018 4E-07 54.6 12.5 140 133-298 72-214 (228)
218 COG0352 ThiE Thiamine monophos 96.9 0.0065 1.4E-07 57.6 9.7 90 202-305 106-195 (211)
219 COG0106 HisA Phosphoribosylfor 96.9 0.0033 7.1E-08 60.3 7.6 80 219-308 37-116 (241)
220 cd04723 HisA_HisF Phosphoribos 96.9 0.0036 7.8E-08 60.2 8.1 77 219-307 41-117 (233)
221 PF01680 SOR_SNZ: SOR/SNZ fami 96.9 0.0021 4.5E-08 58.5 5.8 117 141-293 25-142 (208)
222 PRK13586 1-(5-phosphoribosyl)- 96.9 0.0041 8.9E-08 59.9 8.2 78 219-307 36-113 (232)
223 PLN02446 (5-phosphoribosyl)-5- 96.8 0.0041 8.9E-08 60.7 8.1 74 219-307 49-126 (262)
224 PF01884 PcrB: PcrB family; I 96.8 0.0012 2.5E-08 63.3 4.0 50 256-305 171-220 (230)
225 PRK08005 epimerase; Validated 96.8 0.098 2.1E-06 49.6 16.9 154 127-304 3-199 (210)
226 PLN02617 imidazole glycerol ph 96.8 0.004 8.7E-08 66.9 8.3 78 219-303 273-361 (538)
227 PRK06852 aldolase; Validated 96.8 0.12 2.6E-06 51.7 17.9 190 76-304 55-273 (304)
228 TIGR01859 fruc_bis_ald_ fructo 96.7 0.041 8.8E-07 54.6 14.5 71 222-300 162-234 (282)
229 TIGR02320 PEP_mutase phosphoen 96.7 0.14 3E-06 50.9 17.9 157 123-300 77-244 (285)
230 PRK08745 ribulose-phosphate 3- 96.7 0.12 2.5E-06 49.6 16.5 151 127-304 6-207 (223)
231 PRK07315 fructose-bisphosphate 96.6 0.15 3.2E-06 50.9 17.7 75 224-304 164-240 (293)
232 PF13714 PEP_mutase: Phosphoen 96.6 0.04 8.7E-07 53.3 13.1 150 123-301 68-224 (238)
233 COG0036 Rpe Pentose-5-phosphat 96.6 0.089 1.9E-06 49.9 14.7 152 125-305 4-206 (220)
234 PRK00311 panB 3-methyl-2-oxobu 96.6 0.088 1.9E-06 51.6 15.3 155 76-274 19-203 (264)
235 PRK03512 thiamine-phosphate py 96.6 0.016 3.6E-07 54.9 9.9 77 223-305 119-195 (211)
236 PRK02615 thiamine-phosphate py 96.5 0.014 3.1E-07 59.4 9.7 73 224-304 258-330 (347)
237 PRK05718 keto-hydroxyglutarate 96.5 0.1 2.3E-06 49.5 14.9 39 123-161 13-51 (212)
238 PRK05848 nicotinate-nucleotide 96.5 0.026 5.6E-07 55.7 11.1 93 182-305 168-266 (273)
239 PRK06512 thiamine-phosphate py 96.5 0.016 3.6E-07 55.3 9.4 74 223-305 128-201 (221)
240 KOG2550 IMP dehydrogenase/GMP 96.5 0.016 3.4E-07 59.3 9.4 126 142-300 255-387 (503)
241 COG1830 FbaB DhnA-type fructos 96.5 0.24 5.3E-06 48.2 17.2 148 124-304 77-245 (265)
242 PRK07565 dihydroorotate dehydr 96.4 0.034 7.4E-07 56.3 12.0 107 179-295 86-196 (334)
243 TIGR02321 Pphn_pyruv_hyd phosp 96.4 0.72 1.6E-05 45.9 21.0 206 68-301 13-240 (290)
244 PF02581 TMP-TENI: Thiamine mo 96.4 0.011 2.4E-07 54.4 7.3 70 222-299 111-180 (180)
245 PLN02424 ketopantoate hydroxym 96.4 0.11 2.4E-06 52.3 14.7 162 69-274 35-224 (332)
246 COG2513 PrpB PEP phosphonomuta 96.3 0.33 7.2E-06 47.9 17.6 199 78-300 24-238 (289)
247 COG0107 HisF Imidazoleglycerol 96.3 0.053 1.1E-06 51.6 11.3 127 145-299 91-232 (256)
248 PF01081 Aldolase: KDPG and KH 96.3 0.0051 1.1E-07 57.7 4.4 155 124-305 7-185 (196)
249 PRK09250 fructose-bisphosphate 96.2 0.24 5.3E-06 50.2 16.4 166 123-304 124-326 (348)
250 cd06557 KPHMT-like Ketopantoat 96.1 0.19 4.2E-06 49.0 14.9 157 76-274 16-200 (254)
251 TIGR00222 panB 3-methyl-2-oxob 96.1 0.2 4.3E-06 49.1 14.9 156 76-274 19-202 (263)
252 PRK06801 hypothetical protein; 96.1 0.18 4E-06 50.0 14.9 75 219-301 162-238 (286)
253 PRK07428 nicotinate-nucleotide 96.0 0.088 1.9E-06 52.3 12.2 95 182-305 182-280 (288)
254 PRK01222 N-(5'-phosphoribosyl) 96.0 0.61 1.3E-05 44.1 17.3 180 76-304 7-191 (210)
255 cd06557 KPHMT-like Ketopantoat 96.0 0.12 2.6E-06 50.4 12.6 131 141-295 23-177 (254)
256 cd00381 IMPDH IMPDH: The catal 95.9 0.062 1.3E-06 54.4 10.5 60 224-296 104-163 (325)
257 PF00478 IMPDH: IMP dehydrogen 95.9 0.027 5.8E-07 57.4 7.7 63 223-298 117-179 (352)
258 KOG2334 tRNA-dihydrouridine sy 95.8 0.0046 1E-07 63.2 2.2 133 153-306 289-421 (477)
259 PF00701 DHDPS: Dihydrodipicol 95.8 0.43 9.2E-06 47.2 15.9 195 79-316 19-224 (289)
260 PRK08091 ribulose-phosphate 3- 95.7 0.56 1.2E-05 45.0 15.9 145 123-304 67-215 (228)
261 PRK09427 bifunctional indole-3 95.7 0.16 3.6E-06 53.6 13.0 146 141-305 74-247 (454)
262 cd00377 ICL_PEPM Members of th 95.6 0.097 2.1E-06 50.7 10.3 147 141-296 20-180 (243)
263 TIGR00734 hisAF_rel hisA/hisF 95.6 0.039 8.3E-07 52.7 7.2 76 219-307 42-119 (221)
264 cd00331 IGPS Indole-3-glycerol 95.5 0.035 7.6E-07 52.5 6.9 70 219-301 37-106 (217)
265 COG0135 TrpF Phosphoribosylant 95.5 1 2.3E-05 42.6 16.4 182 77-305 7-192 (208)
266 PTZ00314 inosine-5'-monophosph 95.5 0.043 9.3E-07 58.7 8.0 213 63-296 45-310 (495)
267 PRK00311 panB 3-methyl-2-oxobu 95.4 0.45 9.9E-06 46.7 14.3 131 141-295 26-180 (264)
268 PRK12595 bifunctional 3-deoxy- 95.4 0.61 1.3E-05 47.9 15.7 146 133-305 165-329 (360)
269 COG4981 Enoyl reductase domain 95.3 1.1 2.4E-05 47.6 17.4 209 62-302 28-259 (717)
270 PRK12858 tagatose 1,6-diphosph 95.3 0.24 5.2E-06 50.4 12.3 153 141-304 110-284 (340)
271 PRK04147 N-acetylneuraminate l 95.3 3.5 7.6E-05 40.9 21.8 204 71-316 10-226 (293)
272 PRK13397 3-deoxy-7-phosphohept 95.2 1.1 2.4E-05 43.6 15.9 197 60-297 6-220 (250)
273 cd01568 QPRTase_NadC Quinolina 95.2 0.25 5.4E-06 48.7 11.7 39 266-305 226-264 (269)
274 PRK13957 indole-3-glycerol-pho 95.2 0.083 1.8E-06 51.3 8.1 70 219-301 67-136 (247)
275 PRK08999 hypothetical protein; 95.1 0.072 1.6E-06 53.2 7.8 69 223-299 243-311 (312)
276 PRK00230 orotidine 5'-phosphat 95.1 0.21 4.5E-06 48.0 10.6 139 124-304 53-215 (230)
277 PF00834 Ribul_P_3_epim: Ribul 95.0 0.15 3.3E-06 48.0 9.3 147 127-302 2-200 (201)
278 PRK02227 hypothetical protein; 95.0 0.46 1E-05 45.7 12.5 129 144-299 14-154 (238)
279 cd03329 MR_like_4 Mandelate ra 95.0 0.81 1.8E-05 46.9 15.3 124 135-295 143-270 (368)
280 PRK05458 guanosine 5'-monophos 94.9 0.16 3.4E-06 51.4 9.6 41 255-296 128-168 (326)
281 TIGR01303 IMP_DH_rel_1 IMP deh 94.7 0.095 2.1E-06 55.7 7.9 63 222-297 233-295 (475)
282 PRK07998 gatY putative fructos 94.7 2.4 5.2E-05 42.1 17.2 116 177-302 112-235 (283)
283 PRK08185 hypothetical protein; 94.7 1.6 3.6E-05 43.2 15.9 72 220-301 156-233 (283)
284 PRK05437 isopentenyl pyrophosp 94.7 0.7 1.5E-05 47.3 13.8 147 124-296 60-217 (352)
285 cd06556 ICL_KPHMT Members of t 94.7 0.66 1.4E-05 44.9 12.9 131 141-296 23-176 (240)
286 PRK05096 guanosine 5'-monophos 94.6 0.18 4E-06 50.8 9.2 67 219-298 114-181 (346)
287 PLN02424 ketopantoate hydroxym 94.6 0.73 1.6E-05 46.5 13.4 153 116-295 26-201 (332)
288 PF04131 NanE: Putative N-acet 94.6 0.6 1.3E-05 43.4 11.8 111 140-294 2-117 (192)
289 cd01572 QPRTase Quinolinate ph 94.6 0.3 6.4E-06 48.1 10.5 63 224-305 200-263 (268)
290 TIGR00078 nadC nicotinate-nucl 94.6 0.44 9.6E-06 46.8 11.6 91 184-305 166-259 (265)
291 COG4948 L-alanine-DL-glutamate 94.5 1.2 2.7E-05 45.6 15.5 122 135-294 143-267 (372)
292 PRK13398 3-deoxy-7-phosphohept 94.5 1.6 3.5E-05 42.9 15.3 110 171-297 116-232 (266)
293 PRK08072 nicotinate-nucleotide 94.5 0.48 1E-05 46.9 11.7 95 182-305 174-269 (277)
294 PRK12290 thiE thiamine-phospha 94.5 0.19 4.2E-06 52.4 9.3 76 223-304 317-400 (437)
295 PRK08673 3-deoxy-7-phosphohept 94.4 1.9 4.1E-05 43.9 16.1 110 171-297 182-298 (335)
296 TIGR00222 panB 3-methyl-2-oxob 94.4 0.64 1.4E-05 45.5 12.3 151 116-295 6-179 (263)
297 PRK09517 multifunctional thiam 94.4 0.15 3.3E-06 57.3 9.0 75 225-305 127-203 (755)
298 TIGR01302 IMP_dehydrog inosine 94.4 0.12 2.5E-06 54.7 7.6 62 222-296 232-293 (450)
299 PRK07807 inosine 5-monophospha 94.3 0.14 3E-06 54.5 8.0 63 221-296 234-296 (479)
300 cd03321 mandelate_racemase Man 94.2 1.6 3.5E-05 44.5 15.4 133 125-295 131-266 (355)
301 PRK13813 orotidine 5'-phosphat 94.2 0.93 2E-05 42.7 12.7 124 144-304 74-200 (215)
302 COG0800 Eda 2-keto-3-deoxy-6-p 94.2 0.43 9.3E-06 45.1 10.1 152 123-301 11-186 (211)
303 PRK14057 epimerase; Provisiona 94.1 2.6 5.6E-05 41.2 15.5 142 124-304 75-229 (254)
304 TIGR01361 DAHP_synth_Bsub phos 93.8 1 2.2E-05 44.1 12.4 109 172-297 115-230 (260)
305 cd00954 NAL N-Acetylneuraminic 93.8 7.6 0.00016 38.4 21.4 198 72-311 8-220 (288)
306 PRK06843 inosine 5-monophospha 93.8 0.23 5.1E-06 51.6 8.2 61 223-296 162-222 (404)
307 COG2513 PrpB PEP phosphonomuta 93.8 0.97 2.1E-05 44.6 11.9 85 141-233 29-113 (289)
308 PRK05742 nicotinate-nucleotide 93.7 0.35 7.6E-06 47.8 9.0 63 224-305 207-270 (277)
309 TIGR01305 GMP_reduct_1 guanosi 93.7 0.43 9.2E-06 48.2 9.5 65 219-296 113-178 (343)
310 cd00408 DHDPS-like Dihydrodipi 93.6 7.7 0.00017 37.9 25.3 151 121-311 63-215 (281)
311 cd04740 DHOD_1B_like Dihydroor 93.5 2.5 5.4E-05 41.9 14.9 106 181-295 77-185 (296)
312 COG2876 AroA 3-deoxy-D-arabino 93.5 0.83 1.8E-05 44.5 10.8 116 172-305 135-256 (286)
313 TIGR02320 PEP_mutase phosphoen 93.4 4.8 0.0001 40.0 16.5 145 141-296 20-189 (285)
314 PF02548 Pantoate_transf: Keto 93.4 2.3 5E-05 41.6 13.8 141 128-295 18-181 (261)
315 cd03325 D-galactonate_dehydrat 93.3 2.9 6.2E-05 42.6 15.3 143 124-296 112-257 (352)
316 PLN02898 HMP-P kinase/thiamin- 93.3 0.35 7.5E-06 51.8 8.9 74 223-304 407-483 (502)
317 TIGR00167 cbbA ketose-bisphosp 93.2 9.7 0.00021 37.9 20.5 77 219-302 164-242 (288)
318 PRK09722 allulose-6-phosphate 93.2 4.1 9E-05 39.2 15.2 138 123-299 58-200 (229)
319 PLN02274 inosine-5'-monophosph 93.2 0.21 4.6E-06 53.5 7.1 61 223-296 257-317 (505)
320 COG1646 Predicted phosphate-bi 93.1 0.14 3.1E-06 48.8 4.9 49 255-306 182-230 (240)
321 cd00945 Aldolase_Class_I Class 93.1 2.7 5.8E-05 38.2 13.4 130 135-298 11-151 (201)
322 PF00697 PRAI: N-(5'phosphorib 93.1 0.48 1E-05 44.3 8.4 179 77-305 4-185 (197)
323 TIGR03569 NeuB_NnaB N-acetylne 93.0 4.2 9E-05 41.3 15.6 131 135-291 74-218 (329)
324 cd00950 DHDPS Dihydrodipicolin 92.9 10 0.00022 37.2 21.8 197 71-310 7-217 (284)
325 TIGR01182 eda Entner-Doudoroff 92.9 0.87 1.9E-05 43.0 9.8 78 195-294 8-85 (204)
326 cd02810 DHOD_DHPD_FMN Dihydroo 92.9 3.4 7.3E-05 40.7 14.6 108 180-296 83-196 (289)
327 TIGR02317 prpB methylisocitrat 92.8 1.7 3.7E-05 43.2 12.3 86 141-234 24-109 (285)
328 PRK11320 prpB 2-methylisocitra 92.8 1.8 3.8E-05 43.2 12.4 86 141-234 28-114 (292)
329 PRK05567 inosine 5'-monophosph 92.8 0.27 5.8E-06 52.5 7.2 62 222-296 236-297 (486)
330 PRK08385 nicotinate-nucleotide 92.8 1.3 2.8E-05 43.8 11.4 39 266-305 230-268 (278)
331 TIGR02321 Pphn_pyruv_hyd phosp 92.8 4.4 9.6E-05 40.4 15.2 86 141-234 26-111 (290)
332 cd00408 DHDPS-like Dihydrodipi 92.8 2.7 5.8E-05 41.2 13.7 126 135-287 16-149 (281)
333 PRK01130 N-acetylmannosamine-6 92.8 4.1 8.8E-05 38.5 14.5 129 127-296 9-146 (221)
334 PF04476 DUF556: Protein of un 92.8 1.7 3.7E-05 41.8 11.6 136 144-306 14-161 (235)
335 PRK07259 dihydroorotate dehydr 92.8 4.6 0.0001 40.1 15.5 141 141-295 27-188 (301)
336 cd01573 modD_like ModD; Quinol 92.7 0.44 9.6E-06 47.0 8.0 34 266-300 229-262 (272)
337 TIGR03586 PseI pseudaminic aci 92.7 4.8 0.0001 40.8 15.5 130 136-291 76-217 (327)
338 PRK06015 keto-hydroxyglutarate 92.6 0.97 2.1E-05 42.6 9.7 78 196-295 5-82 (201)
339 cd08210 RLP_RrRLP Ribulose bis 92.6 5 0.00011 41.3 15.6 193 75-305 135-352 (364)
340 PRK14017 galactonate dehydrata 92.5 6.5 0.00014 40.5 16.7 141 125-295 114-257 (382)
341 PRK13396 3-deoxy-7-phosphohept 92.5 4.2 9.1E-05 41.6 14.8 109 172-297 191-307 (352)
342 PF01729 QRPTase_C: Quinolinat 92.4 0.9 1.9E-05 41.6 9.1 96 182-305 66-164 (169)
343 TIGR01306 GMP_reduct_2 guanosi 92.4 0.88 1.9E-05 45.9 9.8 41 255-296 125-165 (321)
344 PRK09196 fructose-1,6-bisphosp 92.4 14 0.00031 37.7 18.5 79 219-300 179-281 (347)
345 cd04729 NanE N-acetylmannosami 92.4 5.3 0.00012 37.7 14.8 130 126-296 12-150 (219)
346 TIGR01334 modD putative molybd 92.4 1.2 2.6E-05 44.1 10.5 96 181-303 174-270 (277)
347 cd03324 rTSbeta_L-fuconate_deh 92.2 6.6 0.00014 41.1 16.4 124 133-294 194-322 (415)
348 cd03326 MR_like_1 Mandelate ra 92.2 6.6 0.00014 40.7 16.3 122 135-294 160-288 (385)
349 TIGR00674 dapA dihydrodipicoli 92.2 13 0.00028 36.7 20.3 194 72-308 6-213 (285)
350 PRK13958 N-(5'-phosphoribosyl) 92.2 9.5 0.00021 36.0 16.0 174 77-300 6-186 (207)
351 PRK07709 fructose-bisphosphate 92.1 14 0.00029 36.8 21.8 113 177-301 115-238 (285)
352 PRK09195 gatY tagatose-bisphos 92.0 14 0.0003 36.7 18.6 74 220-300 162-236 (284)
353 cd08210 RLP_RrRLP Ribulose bis 92.0 7.1 0.00015 40.2 16.0 147 114-295 117-283 (364)
354 TIGR03326 rubisco_III ribulose 92.0 5.5 0.00012 41.7 15.3 154 114-298 135-307 (412)
355 PRK07896 nicotinate-nucleotide 92.0 2.3 5E-05 42.3 11.9 40 265-305 244-283 (289)
356 PRK15452 putative protease; Pr 91.9 6.4 0.00014 41.6 15.8 128 142-299 15-144 (443)
357 PF01081 Aldolase: KDPG and KH 91.8 0.77 1.7E-05 43.1 8.0 78 196-295 9-86 (196)
358 cd00947 TBP_aldolase_IIB Tagat 91.8 12 0.00026 37.1 16.7 151 124-301 69-231 (276)
359 cd04722 TIM_phosphate_binding 91.6 4 8.6E-05 36.6 12.5 134 137-298 12-145 (200)
360 PRK13399 fructose-1,6-bisphosp 91.5 18 0.0004 36.9 18.5 77 220-299 180-280 (347)
361 cd03327 MR_like_2 Mandelate ra 91.4 7.1 0.00015 39.6 15.2 139 125-295 109-251 (341)
362 PF02548 Pantoate_transf: Keto 91.3 4.5 9.8E-05 39.6 13.0 153 76-274 20-204 (261)
363 PF13714 PEP_mutase: Phosphoen 91.2 9.1 0.0002 37.0 15.0 134 141-295 20-174 (238)
364 PRK08610 fructose-bisphosphate 91.0 7.1 0.00015 38.8 14.3 112 177-300 115-237 (286)
365 cd04739 DHOD_like Dihydroorota 91.0 3 6.6E-05 42.1 12.0 106 180-295 85-194 (325)
366 PRK03170 dihydrodipicolinate s 91.0 17 0.00038 35.8 22.8 155 121-316 67-224 (292)
367 cd04725 OMP_decarboxylase_like 90.9 3.8 8.2E-05 38.8 12.0 142 124-304 49-208 (216)
368 cd00952 CHBPH_aldolase Trans-o 90.9 3.8 8.3E-05 41.0 12.6 126 135-286 27-160 (309)
369 TIGR01858 tag_bisphos_ald clas 90.9 5.1 0.00011 39.7 13.1 75 220-301 160-235 (282)
370 TIGR02151 IPP_isom_2 isopenten 90.8 2.8 6.1E-05 42.5 11.6 117 173-297 92-211 (333)
371 cd00951 KDGDH 5-dehydro-4-deox 90.8 18 0.00039 35.8 23.7 150 121-311 66-218 (289)
372 cd02811 IDI-2_FMN Isopentenyl- 90.8 2.9 6.4E-05 42.3 11.7 110 175-296 93-209 (326)
373 TIGR02319 CPEP_Pphonmut carbox 90.7 4.3 9.4E-05 40.5 12.5 86 141-234 27-113 (294)
374 PRK03620 5-dehydro-4-deoxygluc 90.7 19 0.00042 35.9 21.9 151 121-311 73-225 (303)
375 PRK11572 copper homeostasis pr 90.7 5.3 0.00011 38.9 12.7 126 142-294 13-146 (248)
376 cd02809 alpha_hydroxyacid_oxid 90.6 3 6.6E-05 41.5 11.5 85 195-296 116-200 (299)
377 COG0413 PanB Ketopantoate hydr 90.6 9.4 0.0002 37.3 14.1 152 76-274 19-203 (268)
378 cd03328 MR_like_3 Mandelate ra 90.6 7.5 0.00016 39.7 14.6 122 135-294 138-263 (352)
379 PRK00278 trpC indole-3-glycero 90.5 1 2.3E-05 44.0 7.9 71 219-302 76-146 (260)
380 PRK12738 kbaY tagatose-bisphos 90.5 6.1 0.00013 39.3 13.3 76 219-301 161-237 (286)
381 PRK13306 ulaD 3-keto-L-gulonat 90.5 1.1 2.3E-05 42.7 7.8 144 123-304 55-199 (216)
382 TIGR00683 nanA N-acetylneurami 90.4 20 0.00043 35.6 22.2 200 71-310 7-218 (290)
383 cd08207 RLP_NonPhot Ribulose b 90.4 7.1 0.00015 40.8 14.2 153 114-298 134-303 (406)
384 PRK07107 inosine 5-monophospha 90.3 0.6 1.3E-05 50.1 6.5 65 221-297 249-313 (502)
385 PRK05718 keto-hydroxyglutarate 90.3 2.2 4.8E-05 40.5 9.7 78 196-295 16-93 (212)
386 TIGR02313 HpaI-NOT-DapA 2,4-di 90.2 0.97 2.1E-05 45.0 7.5 86 211-304 20-110 (294)
387 PRK09140 2-dehydro-3-deoxy-6-p 90.1 2.5 5.5E-05 39.9 9.9 82 195-297 10-91 (206)
388 PRK06552 keto-hydroxyglutarate 90.1 2.3 5E-05 40.4 9.7 79 195-294 13-93 (213)
389 PF03932 CutC: CutC family; I 90.1 4.5 9.7E-05 38.2 11.4 123 137-293 72-196 (201)
390 PF01116 F_bP_aldolase: Fructo 90.1 6.5 0.00014 39.1 13.2 80 219-302 161-241 (287)
391 PF04309 G3P_antiterm: Glycero 90.1 0.19 4E-06 46.3 2.1 63 220-300 111-173 (175)
392 cd03322 rpsA The starvation se 90.0 14 0.0003 37.8 16.0 124 125-294 116-242 (361)
393 PF00218 IGPS: Indole-3-glycer 90.0 0.76 1.6E-05 44.9 6.3 71 219-302 74-144 (254)
394 cd02922 FCB2_FMN Flavocytochro 89.9 2.1 4.5E-05 43.8 9.7 42 253-296 200-241 (344)
395 PRK12737 gatY tagatose-bisphos 89.6 23 0.0005 35.2 22.1 75 220-301 162-237 (284)
396 COG0800 Eda 2-keto-3-deoxy-6-p 89.6 2.8 6.2E-05 39.6 9.6 77 196-294 14-90 (211)
397 cd08205 RuBisCO_IV_RLP Ribulos 89.6 13 0.00027 38.4 15.3 151 114-297 121-289 (367)
398 PRK07114 keto-hydroxyglutarate 89.6 4.5 9.7E-05 38.7 11.2 78 196-295 16-97 (222)
399 PRK06106 nicotinate-nucleotide 89.6 5.3 0.00011 39.6 12.0 92 183-305 181-275 (281)
400 PRK15072 bifunctional D-altron 89.5 17 0.00037 37.8 16.4 142 132-295 124-286 (404)
401 TIGR02534 mucon_cyclo muconate 89.4 15 0.00033 37.6 15.8 136 124-295 130-267 (368)
402 PRK07084 fructose-bisphosphate 89.3 12 0.00025 37.9 14.3 62 220-283 171-233 (321)
403 TIGR01928 menC_lowGC/arch o-su 89.3 9.5 0.00021 38.4 14.0 129 125-294 122-251 (324)
404 cd08208 RLP_Photo Ribulose bis 89.3 22 0.00047 37.4 16.8 193 75-305 169-387 (424)
405 PRK05835 fructose-bisphosphate 89.2 12 0.00026 37.6 14.3 57 220-281 162-218 (307)
406 TIGR03249 KdgD 5-dehydro-4-deo 89.2 25 0.00053 34.9 22.0 200 71-311 12-223 (296)
407 PRK06559 nicotinate-nucleotide 89.1 4.7 0.0001 40.1 11.2 73 209-305 205-278 (290)
408 PRK09016 quinolinate phosphori 89.1 4.4 9.5E-05 40.5 11.0 92 183-305 196-289 (296)
409 cd03317 NAAAR N-acylamino acid 89.0 13 0.00028 37.8 14.9 130 125-295 126-257 (354)
410 cd08209 RLP_DK-MTP-1-P-enolase 88.8 11 0.00024 39.2 14.1 155 114-298 115-287 (391)
411 cd04733 OYE_like_2_FMN Old yel 88.7 4.2 9.1E-05 41.2 10.9 103 122-235 214-323 (338)
412 PRK11572 copper homeostasis pr 88.5 15 0.00033 35.7 14.0 125 137-295 73-197 (248)
413 PRK14040 oxaloacetate decarbox 88.3 41 0.00089 37.0 18.9 281 72-389 16-324 (593)
414 PRK09427 bifunctional indole-3 88.2 15 0.00033 38.9 15.0 174 76-304 261-437 (454)
415 cd00956 Transaldolase_FSA Tran 88.1 9 0.0002 36.3 12.1 133 124-300 51-189 (211)
416 cd03318 MLE Muconate Lactonizi 88.0 20 0.00044 36.5 15.6 134 125-294 132-267 (365)
417 PRK06256 biotin synthase; Vali 88.0 7.7 0.00017 39.1 12.4 145 141-298 153-302 (336)
418 TIGR03128 RuMP_HxlA 3-hexulose 87.8 9.5 0.00021 35.4 12.0 128 127-297 2-134 (206)
419 TIGR03849 arch_ComA phosphosul 87.6 10 0.00022 36.6 12.2 83 137-237 71-158 (237)
420 PLN02363 phosphoribosylanthran 87.6 30 0.00064 33.9 16.9 182 76-304 51-236 (256)
421 PF03932 CutC: CutC family; I 87.6 6.4 0.00014 37.1 10.6 128 142-296 12-147 (201)
422 PRK01222 N-(5'-phosphoribosyl) 87.6 15 0.00033 34.7 13.3 126 128-296 4-131 (210)
423 TIGR01521 FruBisAldo_II_B fruc 87.6 21 0.00046 36.4 15.0 79 219-300 177-279 (347)
424 cd00951 KDGDH 5-dehydro-4-deox 87.5 2.7 5.9E-05 41.6 8.6 84 211-303 20-108 (289)
425 PRK09549 mtnW 2,3-diketo-5-met 87.2 24 0.00053 36.9 15.5 202 70-306 135-364 (407)
426 COG0329 DapA Dihydrodipicolina 87.2 1.1 2.5E-05 44.7 5.7 86 212-303 24-113 (299)
427 PRK12857 fructose-1,6-bisphosp 87.2 16 0.00035 36.3 13.7 75 220-301 162-237 (284)
428 PLN02417 dihydrodipicolinate s 87.1 3.4 7.5E-05 40.7 9.0 86 211-304 21-111 (280)
429 COG1411 Uncharacterized protei 87.1 5.8 0.00013 37.3 9.7 47 255-302 170-216 (229)
430 PRK03620 5-dehydro-4-deoxygluc 87.1 1.9 4.1E-05 43.1 7.2 84 211-303 27-115 (303)
431 PRK06543 nicotinate-nucleotide 87.0 7.9 0.00017 38.4 11.3 93 182-305 179-274 (281)
432 COG1954 GlpP Glycerol-3-phosph 86.9 1.9 4.1E-05 39.4 6.3 57 221-295 116-172 (181)
433 cd08213 RuBisCO_large_III Ribu 86.9 17 0.00036 38.1 14.2 154 114-298 122-294 (412)
434 cd08213 RuBisCO_large_III Ribu 86.9 17 0.00038 38.0 14.3 195 75-305 140-374 (412)
435 PF03102 NeuB: NeuB family; I 86.7 9.1 0.0002 37.1 11.4 133 135-292 54-197 (241)
436 PRK04147 N-acetylneuraminate l 86.6 3.4 7.4E-05 41.0 8.7 86 211-304 23-114 (293)
437 COG0149 TpiA Triosephosphate i 86.5 8.6 0.00019 37.5 11.0 39 266-304 201-239 (251)
438 PRK03170 dihydrodipicolinate s 86.4 17 0.00037 35.9 13.6 126 135-287 20-153 (292)
439 cd00952 CHBPH_aldolase Trans-o 86.4 2.1 4.6E-05 42.9 7.2 85 211-303 28-117 (309)
440 COG0826 Collagenase and relate 86.4 28 0.00061 35.6 15.3 127 143-299 19-147 (347)
441 PRK12457 2-dehydro-3-deoxyphos 86.4 8.9 0.00019 37.9 11.1 114 172-304 113-243 (281)
442 cd04743 NPD_PKS 2-Nitropropane 86.3 8.6 0.00019 38.9 11.3 92 177-295 37-129 (320)
443 PRK09549 mtnW 2,3-diketo-5-met 86.2 23 0.0005 37.0 14.7 155 114-298 125-297 (407)
444 cd02803 OYE_like_FMN_family Ol 86.1 10 0.00022 38.0 12.0 99 123-235 207-312 (327)
445 cd04726 KGPDC_HPS 3-Keto-L-gul 86.1 18 0.00038 33.3 12.8 126 128-296 4-133 (202)
446 PRK04452 acetyl-CoA decarbonyl 85.9 12 0.00025 37.9 12.0 52 140-200 78-130 (319)
447 TIGR03151 enACPred_II putative 85.7 8.6 0.00019 38.6 11.1 90 178-295 46-135 (307)
448 PRK06096 molybdenum transport 85.5 9.8 0.00021 37.8 11.2 92 182-305 176-272 (284)
449 cd02933 OYE_like_FMN Old yello 85.4 3.9 8.5E-05 41.6 8.6 87 126-236 220-316 (338)
450 cd03174 DRE_TIM_metallolyase D 85.2 24 0.00052 33.8 13.7 78 135-234 17-95 (265)
451 PLN02716 nicotinate-nucleotide 85.2 6.7 0.00015 39.4 9.8 71 225-305 228-299 (308)
452 cd00003 PNPsynthase Pyridoxine 85.1 9.4 0.0002 36.7 10.3 113 172-303 102-218 (234)
453 COG0134 TrpC Indole-3-glycerol 85.1 2.2 4.8E-05 41.6 6.2 74 218-304 71-144 (254)
454 TIGR02313 HpaI-NOT-DapA 2,4-di 85.0 43 0.00093 33.2 22.2 200 70-311 6-220 (294)
455 cd03320 OSBS o-Succinylbenzoat 85.0 37 0.0008 32.9 15.0 130 125-295 73-205 (263)
456 cd08207 RLP_NonPhot Ribulose b 84.8 30 0.00066 36.2 14.8 195 75-305 152-371 (406)
457 cd00954 NAL N-Acetylneuraminic 84.5 3.2 7E-05 41.0 7.4 84 211-303 20-110 (288)
458 TIGR00683 nanA N-acetylneurami 84.4 5.4 0.00012 39.6 8.9 85 211-304 20-111 (290)
459 PRK10550 tRNA-dihydrouridine s 84.4 8.5 0.00018 38.7 10.4 92 123-235 132-225 (312)
460 PLN02460 indole-3-glycerol-pho 84.3 2.7 5.9E-05 42.7 6.7 76 218-305 144-219 (338)
461 cd04736 MDH_FMN Mandelate dehy 84.2 1.9 4.1E-05 44.3 5.7 42 253-296 223-264 (361)
462 COG5016 Pyruvate/oxaloacetate 84.2 26 0.00057 36.4 13.6 137 128-294 86-229 (472)
463 cd00959 DeoC 2-deoxyribose-5-p 84.1 8.4 0.00018 36.0 9.7 83 124-230 116-200 (203)
464 cd08148 RuBisCO_large Ribulose 83.8 32 0.00069 35.5 14.3 197 70-305 128-355 (366)
465 TIGR01362 KDO8P_synth 3-deoxy- 83.7 12 0.00027 36.4 10.6 112 172-304 99-227 (258)
466 PRK13803 bifunctional phosphor 83.6 76 0.0017 35.0 22.2 185 76-304 7-198 (610)
467 cd00452 KDPG_aldolase KDPG and 83.6 10 0.00022 35.1 9.8 69 211-296 15-83 (190)
468 COG1964 Predicted Fe-S oxidore 83.6 4.8 0.0001 42.2 8.2 91 125-233 110-206 (475)
469 COG0284 PyrF Orotidine-5'-phos 83.5 37 0.00079 32.9 13.9 141 124-304 62-222 (240)
470 PRK07535 methyltetrahydrofolat 83.5 3.3 7.2E-05 40.6 6.8 53 134-199 22-74 (261)
471 TIGR00284 dihydropteroate synt 83.3 5.1 0.00011 43.0 8.6 50 137-200 165-214 (499)
472 cd00950 DHDPS Dihydrodipicolin 83.3 4.2 9.1E-05 40.0 7.6 84 211-303 20-109 (284)
473 TIGR00542 hxl6Piso_put hexulos 83.2 24 0.00053 34.3 13.0 104 125-236 3-117 (279)
474 cd00405 PRAI Phosphoribosylant 83.1 33 0.00071 31.9 13.2 113 142-295 11-126 (203)
475 PRK05198 2-dehydro-3-deoxyphos 83.0 13 0.00028 36.4 10.5 112 172-304 107-235 (264)
476 TIGR03326 rubisco_III ribulose 83.0 65 0.0014 33.8 16.6 196 75-305 153-374 (412)
477 TIGR03332 salvage_mtnW 2,3-dik 82.9 28 0.00061 36.4 13.6 198 75-305 148-368 (407)
478 cd08209 RLP_DK-MTP-1-P-enolase 82.8 31 0.00066 36.0 13.8 198 75-305 133-352 (391)
479 PRK06978 nicotinate-nucleotide 82.8 6.4 0.00014 39.3 8.5 73 209-305 213-286 (294)
480 cd08148 RuBisCO_large Ribulose 82.7 46 0.00099 34.4 15.0 152 114-298 118-289 (366)
481 TIGR01740 pyrF orotidine 5'-ph 82.7 16 0.00034 34.5 11.0 141 125-305 50-205 (213)
482 cd03323 D-glucarate_dehydratas 82.5 28 0.00062 36.1 13.7 119 135-294 168-289 (395)
483 PRK11613 folP dihydropteroate 82.4 7.9 0.00017 38.4 9.0 57 135-199 36-95 (282)
484 cd00423 Pterin_binding Pterin 82.3 3.8 8.1E-05 40.0 6.7 61 134-199 21-81 (258)
485 KOG4201 Anthranilate synthase 82.2 7.2 0.00016 37.1 8.1 38 267-304 237-274 (289)
486 PRK04208 rbcL ribulose bisopho 82.2 74 0.0016 34.0 16.6 199 75-306 169-406 (468)
487 TIGR01036 pyrD_sub2 dihydrooro 82.0 33 0.00072 34.8 13.6 164 124-298 56-246 (335)
488 TIGR03581 EF_0839 conserved hy 81.9 9.4 0.0002 36.3 8.7 155 124-312 55-217 (236)
489 TIGR03332 salvage_mtnW 2,3-dik 81.9 41 0.00088 35.2 14.4 155 114-298 130-302 (407)
490 TIGR00674 dapA dihydrodipicoli 81.9 5.3 0.00011 39.4 7.7 85 211-303 18-107 (285)
491 COG0646 MetH Methionine syntha 81.8 21 0.00045 35.6 11.5 147 134-295 50-226 (311)
492 PRK14041 oxaloacetate decarbox 81.7 74 0.0016 33.9 16.5 229 130-393 85-326 (467)
493 PF02679 ComA: (2R)-phospho-3- 81.7 12 0.00027 36.3 9.8 83 137-237 84-171 (244)
494 CHL00040 rbcL ribulose-1,5-bis 81.6 38 0.00083 36.1 14.3 152 114-298 158-331 (475)
495 cd08206 RuBisCO_large_I_II_III 81.5 32 0.0007 36.1 13.5 198 75-304 141-375 (414)
496 KOG3111 D-ribulose-5-phosphate 81.5 31 0.00067 32.4 11.7 139 127-304 67-205 (224)
497 PRK04208 rbcL ribulose bisopho 81.5 40 0.00088 35.9 14.4 155 114-298 151-324 (468)
498 PRK05265 pyridoxine 5'-phospha 81.4 16 0.00034 35.3 10.3 112 172-303 105-220 (239)
499 cd03332 LMO_FMN L-Lactate 2-mo 81.4 2.8 6E-05 43.4 5.6 43 252-296 239-281 (383)
500 cd08212 RuBisCO_large_I Ribulo 81.4 31 0.00068 36.5 13.5 194 75-304 154-388 (450)
No 1
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1.6e-63 Score=496.59 Aligned_cols=318 Identities=42% Similarity=0.758 Sum_probs=275.8
Q ss_pred CcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHH
Q 013789 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANA 148 (436)
Q Consensus 69 n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~ 148 (436)
+++++|||+|+||.+||.+|+++|+.+++||||++++.+.++..+ .++.++++++|+++||+|++|+.++++|+++++
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 78 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEK 78 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHh
Confidence 479999999999999999999998669999999999999876544 577888999999999999999999999999999
Q ss_pred CCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCcc
Q 013789 149 YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR 228 (436)
Q Consensus 149 ~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd 228 (436)
+|+|+||||||||++++.+ ++||++|+++|+++.++++++++++++||+||+|+||++.++.+++.++ ++.++++|++
T Consensus 79 ~g~d~IDlN~GCP~~~v~~-~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~-~~~l~~~G~~ 156 (318)
T TIGR00742 79 RGYDEINLNVGCPSDRVQN-GNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDF-VEIVSGKGCQ 156 (318)
T ss_pred CCCCEEEEECCCCHHHhCC-CCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHH-HHHHHHcCCC
Confidence 9999999999999988765 5689999999999999999999999999999999999876555666654 5677889999
Q ss_pred EEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcchhh
Q 013789 229 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 308 (436)
Q Consensus 229 ~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~ 308 (436)
+|+|||||+..+|.++..++.+++.+|+.+.++++.++++|||+||||.|++|+.+++. |||+||||||++.|||+| .
T Consensus 157 ~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if-~ 234 (318)
T TIGR00742 157 NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLL-A 234 (318)
T ss_pred EEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHH-H
Confidence 99999999866787777777788888999999988876899999999999999999997 999999999999999996 5
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhhhHHHHHH
Q 013789 309 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 388 (436)
Q Consensus 309 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~y~~~~~g~~~~r~~l~~~~~~~~~~~~~l~ 388 (436)
+++..+++.+....++.++++.|.+|++...++ ..+++.+|||+.||++++|++++||++++....+..+..++|+
T Consensus 235 ~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~g~~~~~~~r~~~~~~~~~~~~~~~~~~ 310 (318)
T TIGR00742 235 NVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLLGLFQGKPGAKQWRRYLSENAPKAGAGIEVLE 310 (318)
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCCCcHHHHH
Confidence 555544443333457778888888888765433 3578999999999999999999999999876555567889999
Q ss_pred HHHHhCCC
Q 013789 389 ETIVAIPD 396 (436)
Q Consensus 389 ~~~~~~~~ 396 (436)
+++..+|+
T Consensus 311 ~~~~~~~~ 318 (318)
T TIGR00742 311 TALETVPE 318 (318)
T ss_pred HHHHhccC
Confidence 99887764
No 2
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-63 Score=493.42 Aligned_cols=315 Identities=29% Similarity=0.472 Sum_probs=268.4
Q ss_pred cccCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHH
Q 013789 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNL 139 (436)
Q Consensus 60 ~~i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~ 139 (436)
.+++.+.+++++++|||+|+||.+||++++++|+.+++||||+++.++.++.++....+...++++|+++||+|++|+.+
T Consensus 2 ~~~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l 81 (323)
T COG0042 2 LKIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELL 81 (323)
T ss_pred CccccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHH
Confidence 34788899999999999999999999999999744999999999999999887666655555779999999999999999
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC-CcEEEEeccCCCCCCcHHHHHHHH
Q 013789 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFI 218 (436)
Q Consensus 140 ~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~-iPvsvKiR~G~~~~~~~~~~~~~l 218 (436)
++||+++++.|+|+||||||||++++++.+. |++||++|+++.+|+++++++++ +|||||+|+||++.+. ....+
T Consensus 82 ~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~-Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~---~~~~i 157 (323)
T COG0042 82 AEAAKIAEELGADIIDLNCGCPSPKVVKGGA-GAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI---LALEI 157 (323)
T ss_pred HHHHHHHHhcCCCEEeeeCCCChHHhcCCCc-chhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc---cHHHH
Confidence 9999999999999999999999999998765 99999999999999999999995 9999999999988651 23345
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 297 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGR 297 (436)
+++++++|+++|+|||||+.++|.++ .+|++++++++.++++|||+||||.|++|+.++++ +|||+|||||
T Consensus 158 a~~~~~~g~~~ltVHgRtr~~~y~~~--------ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 158 ARILEDAGADALTVHGRTRAQGYLGP--------ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred HHHHHhcCCCEEEEecccHHhcCCCc--------cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcH
Confidence 77889999999999999998877654 45999999999885599999999999999999999 8999999999
Q ss_pred HHHhCCcchhhhhhhhhcCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 013789 298 AAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAF 377 (436)
Q Consensus 298 a~l~~P~lf~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~y~~~~~g~~~~r~~l~~~~ 377 (436)
|++.|||+| +++.....|... +.++.++++.+..|.+.+.++|| ...++.++||+.||+++++++++||+.+.+ +
T Consensus 230 ga~~nP~l~-~~i~~~~~g~~~-~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~~~~~~~~~a~~~r~~~~~-~ 304 (323)
T COG0042 230 GALGNPWLF-RQIDYLETGELL-PPTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLGYYLKGLPGARELRRALNK-A 304 (323)
T ss_pred HHccCCcHH-HHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhcCccHHHHHHHHhc-c
Confidence 999999996 444222233322 26777888888888888888888 578999999999999999999999998733 2
Q ss_pred HhhhhHHHHHHHHH
Q 013789 378 QTCKTVKSFLEETI 391 (436)
Q Consensus 378 ~~~~~~~~~l~~~~ 391 (436)
.+..++.+.++.+.
T Consensus 305 ~~~~~~~~~l~~~~ 318 (323)
T COG0042 305 EDGAEVRRALEAVF 318 (323)
T ss_pred CcHHHHHHHHHHHH
Confidence 44444444444443
No 3
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=1.6e-60 Score=479.05 Aligned_cols=323 Identities=43% Similarity=0.796 Sum_probs=282.7
Q ss_pred cCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHH
Q 013789 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELA 146 (436)
Q Consensus 67 l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~ 146 (436)
-++++++|||+|+||.+||.+|+++|+.+++||||++++++.++. ...++..+++++|+++||+|++|+.++++|+++
T Consensus 9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~ 86 (333)
T PRK11815 9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAKLA 86 (333)
T ss_pred CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHH
Confidence 467899999999999999999999987799999999999998865 567778889999999999999999999999999
Q ss_pred HHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCC
Q 013789 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 226 (436)
Q Consensus 147 ~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~G 226 (436)
+++|+|+||||+|||.+++ ++++||++|+++|+++.++++++++++++||+||+|+|+++..+..++.++ ++.++++|
T Consensus 87 ~~~g~d~IdlN~gCP~~~v-~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~-~~~l~~aG 164 (333)
T PRK11815 87 EDWGYDEINLNVGCPSDRV-QNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDF-VDTVAEAG 164 (333)
T ss_pred HhcCCCEEEEcCCCCHHHc-cCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHH-HHHHHHhC
Confidence 9999999999999999776 467899999999999999999999999999999999999876555556664 45667899
Q ss_pred ccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcch
Q 013789 227 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (436)
Q Consensus 227 vd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 306 (436)
+|+|++|+|+...+|.++..++.+++.+|+++.++++.++++|||+||||.|++|+.++++ |||+||||||++.|||+|
T Consensus 165 ~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~ 243 (333)
T PRK11815 165 CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLL 243 (333)
T ss_pred CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHH
Confidence 9999999999866777777777889999999999888766899999999999999999998 699999999999999996
Q ss_pred hhhhhhhhcCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH-hhhhHHH
Q 013789 307 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQ-TCKTVKS 385 (436)
Q Consensus 307 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~y~~~~~g~~~~r~~l~~~~~-~~~~~~~ 385 (436)
+++.....|.+.+..++.++++.|.+|++.+++ +|+ .++.+|||+.||++++||+++||+++++... .++++ +
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~-~ 317 (333)
T PRK11815 244 -AEVDRELFGEPAPPLSRSEVLEAMLPYIERHLA-QGG---RLNHITRHMLGLFQGLPGARAWRRYLSENAHKPGAGI-E 317 (333)
T ss_pred -HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH-cCc---hHHHHHHHHHHHHcCCCCHHHHHHHHHhhcccCCCCH-H
Confidence 556555556544446888999999999988776 454 5889999999999999999999999976643 35566 9
Q ss_pred HHHHHHHhCCCCCCC
Q 013789 386 FLEETIVAIPDSVLD 400 (436)
Q Consensus 386 ~l~~~~~~~~~~~~~ 400 (436)
+|++++..+++..+.
T Consensus 318 ~~~~~~~~~~~~~~~ 332 (333)
T PRK11815 318 VLEEALALVEEAALE 332 (333)
T ss_pred HHHHHHHhhhhhhcc
Confidence 999999999988775
No 4
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=1.5e-59 Score=469.83 Aligned_cols=315 Identities=22% Similarity=0.298 Sum_probs=264.3
Q ss_pred ccCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHH
Q 013789 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLA 140 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~ 140 (436)
+||++.+++++++|||+|+||.+||.+|+++| +|++||||++++++....++....+...+++.|+++||+|++|++++
T Consensus 2 ~i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g-~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~ 80 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMA 80 (321)
T ss_pred ccCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHH
Confidence 47999999999999999999999999999997 69999999999987765555544444556778999999999999999
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
++|+++++.|+|+||||||||++++.+++. |++|+++|+++.++++++++++++||++|+|.||+... .+..+ +++
T Consensus 81 ~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~-Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~--~~~~~-~a~ 156 (321)
T PRK10415 81 DAARINVESGAQIIDINMGCPAKKVNRKLA-GSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH--RNCVE-IAQ 156 (321)
T ss_pred HHHHHHHHCCCCEEEEeCCCCHHHHcCCCc-ccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCc--chHHH-HHH
Confidence 999999899999999999999998888775 99999999999999999999999999999999998632 12233 345
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHH
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 299 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~ 299 (436)
.++++|+|+|++|||+...... ++.+|+++.++++.+ ++|||+||||.|++|+.++++ +|||+||+|||+
T Consensus 157 ~le~~G~d~i~vh~rt~~~~~~--------G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~ 227 (321)
T PRK10415 157 LAEDCGIQALTIHGRTRACLFN--------GEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAA 227 (321)
T ss_pred HHHHhCCCEEEEecCccccccC--------CCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHh
Confidence 6788999999999998532211 223488898888875 899999999999999999998 899999999999
Q ss_pred HhCCcchhhhhhhhh-cCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 013789 300 YQNPWYTLGHVDTAI-YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQ 378 (436)
Q Consensus 300 l~~P~lf~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~y~~~~~g~~~~r~~l~~~~~ 378 (436)
+.|||+| +++.... .|.+.+..++.++++.+.+|++.+.++||+ +.+++.+|||+.||++++|++++||++++. ++
T Consensus 228 l~nP~if-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~-~~ 304 (321)
T PRK10415 228 QGRPWIF-REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP-AKGYRIARKHVSWYLQEHAPNDQFRRTFNA-IE 304 (321)
T ss_pred hcCChHH-HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHc-CC
Confidence 9999996 5554433 344333456778888888888888888987 678999999999999999999999999844 36
Q ss_pred hhhhHHHHHHHHHH
Q 013789 379 TCKTVKSFLEETIV 392 (436)
Q Consensus 379 ~~~~~~~~l~~~~~ 392 (436)
+..++.++++++++
T Consensus 305 ~~~~~~~~~~~~~~ 318 (321)
T PRK10415 305 DASEQLEALEAYFE 318 (321)
T ss_pred CHHHHHHHHHHHHH
Confidence 66777777777654
No 5
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=3.5e-59 Score=464.56 Aligned_cols=293 Identities=21% Similarity=0.269 Sum_probs=240.5
Q ss_pred cEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhh---hhc---cCCCCCcEEEEEcCCCHHHHHHHH
Q 013789 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDR---FLA---FSPEQHPIVLQIGGSNLDNLAKAT 143 (436)
Q Consensus 70 ~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~---~~~---~~~~~~pi~vQL~g~~p~~~~~aA 143 (436)
+++||||+|+||.+||.+|+++||++++||||++++++....+.+.. .+. .+++++|+++||+|++|+.|+++|
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 68999999999999999999998899999999999988776554432 223 567889999999999999999999
Q ss_pred HHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc--CCcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 144 ~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~--~iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
+++++.|+|+||||||||++++.++|. |++|+++|+++.+|+++|++.+ ++||+||+|+||++.+.+. + +++.
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~---~-~a~~ 156 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKF---E-IADA 156 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHH---H-HHHH
Confidence 999999999999999999999988775 9999999999999999999987 4999999999997643332 3 3566
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 300 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l 300 (436)
++++|+|+|+||+|+..+ +.+ .++.+|+.+.++++.+ ++|||+||||.|++|+.++++ +|||+||||||++
T Consensus 157 l~~~Gvd~i~Vh~Rt~~~-~y~------g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 157 VQQAGATELVVHGRTKED-GYR------AEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHhcCCCEEEECCCCCcc-CCC------CCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 788999999999999743 222 1234689999988875 899999999999999999997 9999999999999
Q ss_pred hCCcchhhhhhhhhcCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhh
Q 013789 301 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTC 380 (436)
Q Consensus 301 ~~P~lf~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~y~~~~~g~~~~r~~l~~~~~~~ 380 (436)
.|||||. ++.. |.+ ..++.++++.+..|.+...+.+++ ...+.++|||+.||+++++++++||+++ +++
T Consensus 229 ~nP~lf~-~~~~---g~~--~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~i----~~~ 297 (312)
T PRK10550 229 NIPNLSR-VVKY---NEP--RMPWPEVVALLQKYTRLEKQGDTG-LYHVARIKQWLGYLRKEYDEATELFQEI----RAL 297 (312)
T ss_pred hCcHHHH-Hhhc---CCC--CCCHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHhcCCcHHHHHHHH----HcC
Confidence 9999974 5543 332 235556666566665543444443 4578899999999999999999999888 444
Q ss_pred hhHHHH
Q 013789 381 KTVKSF 386 (436)
Q Consensus 381 ~~~~~~ 386 (436)
++..++
T Consensus 298 ~~~~e~ 303 (312)
T PRK10550 298 NNSPDI 303 (312)
T ss_pred CCHHHH
Confidence 555553
No 6
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=3.4e-59 Score=465.12 Aligned_cols=301 Identities=29% Similarity=0.483 Sum_probs=221.3
Q ss_pred EEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCC
Q 013789 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 151 (436)
Q Consensus 72 ilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~ 151 (436)
++|||+|+||.+||.+++++|+.+++||||++++.+.+..+.....+...++++|+++||+|++|+.+++||+++.+.|+
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 68999999999999999999877799999999999998887778888888899999999999999999999999999999
Q ss_pred CEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEE
Q 013789 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (436)
Q Consensus 152 d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~ 231 (436)
|+||||||||+++++++| +|++||++|+.+.++++++++++++||+||+|+|+++ +.++..++ ++.++++|+++|+
T Consensus 81 ~~IDlN~GCP~~~v~~~g-~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~--~~~~~~~~-~~~l~~~G~~~i~ 156 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGG-AGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDD--SPEETIEF-ARILEDAGVSAIT 156 (309)
T ss_dssp SEEEEEE---SHHHHHCT--GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT----CHHHHHH-HHHHHHTT--EEE
T ss_pred cEEeccCCCCHHHHhcCC-cChhhhcChHHhhHHHHhhhcccccceEEeccccccc--chhHHHHH-HHHhhhcccceEE
Confidence 999999999999998876 5999999999999999999999999999999999984 23344453 4567889999999
Q ss_pred EccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCCcchhhhh
Q 013789 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 310 (436)
Q Consensus 232 vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~ 310 (436)
|||||..+... ++.+|+.+.++++.+ ++|||+||||.|++|+.++++ +||||||||||++.|||+|.+ .
T Consensus 157 vH~Rt~~q~~~--------~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~-~ 226 (309)
T PF01207_consen 157 VHGRTRKQRYK--------GPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFRE-I 226 (309)
T ss_dssp EECS-TTCCCT--------S---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCH-H
T ss_pred EecCchhhcCC--------cccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhh-h
Confidence 99999754433 245699999998886 799999999999999999998 799999999999999999864 2
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhhhHHHHHH
Q 013789 311 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 388 (436)
Q Consensus 311 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~y~~~~~g~~~~r~~l~~~~~~~~~~~~~l~ 388 (436)
.....+......+..+.++.+.+|.+.+.+++|+ ...+..++||+.||++++++++.||+.+++. ++..++.+.|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~y~~~~~~~~~~r~~l~~~-~~~~e~~~~l~ 302 (309)
T PF01207_consen 227 DQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGE-EKALRQMRKHLKWYFKGFPGARKFRRELNKC-KTLEEFLELLE 302 (309)
T ss_dssp HCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHC-CHHHHHHHTTCCCCTTTSTTHHHHHHHHCCH--SHHHHHHHH-
T ss_pred hhhccCCCCCCCchhHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHccCCcHHHHHHHHHhh-CCHHHHhhhhc
Confidence 2222222211222445555555666667778876 5789999999999999999999999988333 44444444444
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=2.2e-55 Score=440.20 Aligned_cols=314 Identities=25% Similarity=0.434 Sum_probs=260.5
Q ss_pred cCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHH
Q 013789 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 141 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~ 141 (436)
||++.+++|+++|||+|+||.+||.+|+++| ++++||||++++.+.+..+....++..++++.|+++||+|++|+++++
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~ 79 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAE 79 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHH
Confidence 4788899999999999999999999999998 899999999999998877667777788889999999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
+|++++++|+|+||||+|||..++++++ +|+.++++++++.+++++|++.+++||+||+|.||++... +..+ +++.
T Consensus 80 aa~~~~~~G~d~IelN~gcP~~~~~~~~-~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~--~~~~-~a~~ 155 (319)
T TIGR00737 80 AAKINEELGADIIDINMGCPVPKITKKG-AGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHI--NAVE-AARI 155 (319)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhcCCC-ccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcc--hHHH-HHHH
Confidence 9999999999999999999987666544 3777999999999999999999999999999999975321 2233 3456
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 300 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l 300 (436)
++++|+|+|++|+|+... +.+ ++..|+++.++++.+ ++|||+||||.|++|+.++++ +|||+||+|||++
T Consensus 156 l~~~G~d~i~vh~r~~~~-~~~-------~~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l 226 (319)
T TIGR00737 156 AEDAGAQAVTLHGRTRAQ-GYS-------GEANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGAL 226 (319)
T ss_pred HHHhCCCEEEEEcccccc-cCC-------CchhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhh
Confidence 678999999999998632 221 233588888888775 899999999999999999996 8999999999999
Q ss_pred hCCcchhhhhhhhhc-CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 013789 301 QNPWYTLGHVDTAIY-GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT 379 (436)
Q Consensus 301 ~~P~lf~~~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~y~~~~~g~~~~r~~l~~~~~~ 379 (436)
.|||+| .++..... +...+..+..+.++.+.+|++.+.++||+ ...+..+|||+.+|+++++++++||+++.+. ++
T Consensus 227 ~~P~l~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~-~~ 303 (319)
T TIGR00737 227 GNPWLF-RQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGE-SKGLRIARKHIAWYLKGFPGNAALRQTLNHA-SS 303 (319)
T ss_pred hCChHH-HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhcCCcHHHHHHHHHcC-CC
Confidence 999996 44444332 32222346667777777788777888886 5788999999999999999999999998443 66
Q ss_pred hhhHHHHHHHHHH
Q 013789 380 CKTVKSFLEETIV 392 (436)
Q Consensus 380 ~~~~~~~l~~~~~ 392 (436)
..++.+++++++.
T Consensus 304 ~~~~~~~~~~~~~ 316 (319)
T TIGR00737 304 FQEVKQLLDDFFE 316 (319)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666553
No 8
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-55 Score=430.56 Aligned_cols=327 Identities=34% Similarity=0.503 Sum_probs=267.4
Q ss_pred EEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCC
Q 013789 72 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 151 (436)
Q Consensus 72 ilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~ 151 (436)
++|||+++|+.+||.++|.+ |++++||||+.++.+++..+.....+.+.++++|++||++|+||+.+.+||++++.++
T Consensus 22 i~APMvd~S~l~fR~L~R~y-~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~- 99 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLY-GADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC- 99 (358)
T ss_pred ccCCcccccHHHHHHHHHHh-CCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhhc-
Confidence 89999999999999999999 5999999999999999887777778889999999999999999999999999999997
Q ss_pred CEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEE
Q 013789 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (436)
Q Consensus 152 d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~ 231 (436)
|+||||||||. +++++|+||+.|+.+|+++.++|.+|++.++.||++|||++.+..++++ . ++.++++|++.++
T Consensus 100 D~idlNcGCPq-~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd-~----ak~~e~aG~~~lt 173 (358)
T KOG2335|consen 100 DGIDLNCGCPQ-KVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVD-Y----AKMLEDAGVSLLT 173 (358)
T ss_pred CcccccCCCCH-HHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHH-H----HHHHHhCCCcEEE
Confidence 99999999996 7888999999999999999999999999999999999999866544432 2 5578899999999
Q ss_pred EccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCCcchhhhh
Q 013789 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 310 (436)
Q Consensus 232 vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~ 310 (436)
|||||+.++|. ..+|++|+.++.+++.+++||||+||+|.+.+|+.++++ +||||||+|||+|.|||+|..
T Consensus 174 VHGRtr~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~-- 245 (358)
T KOG2335|consen 174 VHGRTREQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT-- 245 (358)
T ss_pred EecccHHhcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc--
Confidence 99999988874 236778999999999987799999999999999999999 999999999999999999854
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHhhhhHHHHHHH
Q 013789 311 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG-LFKRKADAAFQTCKTVKSFLEE 389 (436)
Q Consensus 311 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~y~~~~~g~~-~~r~~l~~~~~~~~~~~~~l~~ 389 (436)
..++ .+..+++++|+++. .+++|.. ....++-|+...++.+-... .+|+.+ ...+.+.++.+|+++
T Consensus 246 --~~~~-----~~~~~~~~~~l~~~---~e~~g~~--~~~~~~~Hl~~m~~~~~~~~~~~r~~~-~~~~~~~~~~~~l~~ 312 (358)
T KOG2335|consen 246 --AGYG-----PTPWGCVEEYLDIA---REFGGLS--SFSLIRHHLFKMLRPLLSIHQDLRRDL-AALNSCESVIDFLEE 312 (358)
T ss_pred --CCCC-----CCHHHHHHHHHHHH---HHcCCCc--hhhHHHHHHHHHHHHHHhhhHHHHHHH-hhccchhhHHHHHHH
Confidence 1122 23456777776654 3455442 22333444433333322222 456666 445778899999998
Q ss_pred HHHhCCCCCCCCCCcCCCC-------CccccccccCCCCCCCCcc
Q 013789 390 TIVAIPDSVLDSPIEEAPR-------GREDLFADVHDLLPPPYKA 427 (436)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 427 (436)
....++..+.|.+..+... |.+..++...+.+||.++.
T Consensus 313 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~k 357 (358)
T KOG2335|consen 313 LVLMVRKRVEDGFGRGVEEITKFITPGPEDSLAAEYRVLPPWRSK 357 (358)
T ss_pred HHHHHHhhhccccccCccccccccCCchhhhcccccccCCCcccC
Confidence 8888888887776554422 7777777778888887764
No 9
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=1.1e-43 Score=355.11 Aligned_cols=288 Identities=21% Similarity=0.301 Sum_probs=242.7
Q ss_pred CccccCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHH
Q 013789 58 KAEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD 137 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~ 137 (436)
.|-.-..+.+..+.+|||+.++.+.+||++|+.+| ++.++.||..+..|+.+......+++.|..+.-|+|||.|+.|+
T Consensus 254 ~p~eKk~lD~r~K~~LaPLTTvGNLPFRRlCk~lG-ADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pd 332 (614)
T KOG2333|consen 254 RPQEKKLLDFRDKKYLAPLTTVGNLPFRRLCKKLG-ADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPD 332 (614)
T ss_pred ChhcccccccccceeeccccccCCccHHHHHHHhC-CccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChH
Confidence 34444567788999999999999999999999996 89999999999999988877788888888888999999999999
Q ss_pred HHHHHHHHHHH-CCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC-CcEEEEeccCCCCCCcHHHHH
Q 013789 138 NLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLC 215 (436)
Q Consensus 138 ~~~~aA~~~~~-~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~-iPvsvKiR~G~~~~~~~~~~~ 215 (436)
.++++|+++.+ ..+|+||||+|||.+.+.++|+ |++||++|..+.++++++.+..+ +|||||+|.|..+.... ..
T Consensus 333 t~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~-GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~--a~ 409 (614)
T KOG2333|consen 333 TAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGG-GSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPV--AH 409 (614)
T ss_pred HHHHHHHHHHhhcceeeeeccCCCChheeeccCC-cchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchh--HH
Confidence 99999997754 6789999999999999999998 99999999999999999988775 69999999998775442 12
Q ss_pred HHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCC-cEEEEeCCCCCHHHHHHHHH-cC-CCe
Q 013789 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR-KG-AHH 292 (436)
Q Consensus 216 ~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~-iPVIanGgI~s~~da~~~l~-~G-ad~ 292 (436)
++|..+..+-|+++||+|||...+.+... .+|+|+.++++.... +|||+||||.|.+|..+.+. .+ +++
T Consensus 410 ~Li~~i~newg~savTlHGRSRqQRYTK~--------AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~s 481 (614)
T KOG2333|consen 410 ELIPRIVNEWGASAVTLHGRSRQQRYTKS--------ANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDS 481 (614)
T ss_pred HHHHHHhhccCcceEEecCchhhhhhhcc--------cChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcce
Confidence 34455555789999999999986665433 348999998877655 99999999999999888887 44 999
Q ss_pred eeehHHHHhCCcchhhhhhhhhcCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH---HHhhcC
Q 013789 293 VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPL---LHFFHS 362 (436)
Q Consensus 293 VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~---~~y~~~ 362 (436)
||||||+|..|||| .+|+...+.++++ .+|.++|+.|++|+ +++||++..++...|+++ ++||+.
T Consensus 482 vMIaRGALIKPWIF-tEIkeqq~wD~sS-teRldiL~df~nyG---LeHWGSDt~GVetTRRFlLE~lSF~~R 549 (614)
T KOG2333|consen 482 VMIARGALIKPWIF-TEIKEQQHWDISS-TERLDILKDFCNYG---LEHWGSDTKGVETTRRFLLEFLSFFHR 549 (614)
T ss_pred EEeeccccccchHh-hhhhhhhcCCccc-hHHHHHHHHHHhhh---hhhcCCccccHHHHHHHHHHHHHHHHh
Confidence 99999999999996 6777766665554 68999999999997 578898777776666655 556655
No 10
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=5.7e-42 Score=327.21 Aligned_cols=223 Identities=30% Similarity=0.533 Sum_probs=194.2
Q ss_pred cEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHC
Q 013789 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAY 149 (436)
Q Consensus 70 ~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~ 149 (436)
++++|||.++||.+||.+++.+| ++++||||+.++.+....+....++..++.+.|+++||.|+++++|+++|+++.++
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~a 79 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEEL 79 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHC-CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhc
Confidence 47999999999999999999998 99999999999999887766666666788899999999999999999999999999
Q ss_pred CCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccE
Q 013789 150 NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH 229 (436)
Q Consensus 150 G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~ 229 (436)
|||+||||+|||.. +.++++||++++++++++.++++++++.+++||++|+|.||+.. ++..++ .+.+++.|+|.
T Consensus 80 G~d~ieln~g~p~~-~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~~-~~~l~~~Gvd~ 154 (231)
T cd02801 80 GADGIDLNMGCPSP-KVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLEL-AKALEDAGASA 154 (231)
T ss_pred CCCEEEEeCCCCHH-HHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHHH-HHHHHHhCCCE
Confidence 99999999999996 45678999999999999999999999998999999999998763 233332 44567799999
Q ss_pred EEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCCcchh
Q 013789 230 FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 307 (436)
Q Consensus 230 I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~ 307 (436)
|++|+|+..... .++..|+.+.++.+. .++||++||||.+++|+.++++ .|||+||+||+++.|||+|.
T Consensus 155 i~v~~~~~~~~~--------~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~ 224 (231)
T cd02801 155 LTVHGRTREQRY--------SGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFR 224 (231)
T ss_pred EEECCCCHHHcC--------CCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHH
Confidence 999999853211 123358888887765 4899999999999999999999 59999999999999999974
No 11
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=1.8e-38 Score=303.95 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=166.8
Q ss_pred cEEEcCCCCCChHHHHHHHHHcCCCcEE--------------------EeccccchhhhhcccchhhhhccCCCCCcEEE
Q 013789 70 WFSVAPMMDWTDNHYRTLARLISKHAWL--------------------YTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 129 (436)
Q Consensus 70 ~iilAPMagvtd~~fr~~~~~~Gg~gl~--------------------~temv~~~~l~~~~~~~~~~~~~~~~~~pi~v 129 (436)
|++||||+|+||.+||..+...+|++++ .+||++.+.+.+-...+.. +...+.|+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~---~~~~~~p~~v 77 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKA---LKDSNVLVGV 77 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHH---hhccCCeEEE
Confidence 6899999999999999965555556666 4555554422221111111 2334679999
Q ss_pred EEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCC
Q 013789 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (436)
Q Consensus 130 QL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~ 209 (436)
||+|++++.+.++|+.+++. .|.||||||||++++.++|. |++|+++|+++.++++++++ .++||++|+|.||+ .
T Consensus 78 qi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~-G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~--~ 152 (233)
T cd02911 78 NVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGA-GEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD--V 152 (233)
T ss_pred EecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCc-chHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC--c
Confidence 99999999999999999886 59999999999998887775 99999999999999999998 59999999999987 2
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcC
Q 013789 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (436)
Q Consensus 210 ~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~G 289 (436)
+..++ ++.++++|+|.|+++++.. | ...+|+.+++++ .++|||+||||.|++|+.+++++|
T Consensus 153 ~~~~l----a~~l~~aG~d~ihv~~~~~---g---------~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~G 213 (233)
T cd02911 153 DDEEL----ARLIEKAGADIIHVDAMDP---G---------NHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYG 213 (233)
T ss_pred CHHHH----HHHHHHhCCCEEEECcCCC---C---------CCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcC
Confidence 33333 4567889999887764432 2 123477777764 489999999999999999999999
Q ss_pred CCeeeehHHHHhCCcchhhhh
Q 013789 290 AHHVMVGRAAYQNPWYTLGHV 310 (436)
Q Consensus 290 ad~VmiGRa~l~~P~lf~~~~ 310 (436)
||+||+||+ .|||+| +++
T Consensus 214 aD~VmiGR~--~~p~~~-~~~ 231 (233)
T cd02911 214 ADMVSVARA--SLPENI-EWL 231 (233)
T ss_pred CCEEEEcCC--CCchHH-HHh
Confidence 999999999 999986 443
No 12
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=1e-33 Score=281.23 Aligned_cols=229 Identities=21% Similarity=0.270 Sum_probs=177.2
Q ss_pred ccCCeecCCcEEEcC-CCCCChHHHHHHHHHcCCCcEEEe---------------------ccccchhhhhc-ccchhhh
Q 013789 61 MVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYT---------------------EMLAAETIIYQ-QGNLDRF 117 (436)
Q Consensus 61 ~i~~l~l~n~iilAP-Magvtd~~fr~~~~~~Gg~gl~~t---------------------emv~~~~l~~~-~~~~~~~ 117 (436)
++++++++|||++|| |.+.++..+|.+++. |+|.++| +|++..++... .+...+.
T Consensus 4 ~~~g~~l~npi~~aag~~~~~~~~~~~~~~~--G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~ 81 (300)
T TIGR01037 4 ELFGIRFKNPLILASGIMGSGVESLRRIDRS--GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEE 81 (300)
T ss_pred EECCEECCCCCEeCCcCCCCCHHHHHHHHHc--CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHH
Confidence 478999999999999 579999999988765 5899999 45554444331 1111111
Q ss_pred h-c-cCCCCCcEEEEEcCCCHHHHHHHHHHHHHCC--CCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc
Q 013789 118 L-A-FSPEQHPIVLQIGGSNLDNLAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193 (436)
Q Consensus 118 ~-~-~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G--~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~ 193 (436)
+ . .++.+.|+++||+|++++++.++|+.+++++ +|+||||+|||+.+ .+|+.++.+++++.++++++++.+
T Consensus 82 ~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~-----~~g~~l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 82 LKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK-----GGGIAIGQDPELSADVVKAVKDKT 156 (300)
T ss_pred HHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC-----CCccccccCHHHHHHHHHHHHHhc
Confidence 1 1 2333569999999999999999999998864 89999999999963 369999999999999999999998
Q ss_pred CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccc---------------cCCCCCCCCCCCCccHHHH
Q 013789 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---------------NGISPAENRTIPPLKYEYY 258 (436)
Q Consensus 194 ~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~---------------~G~~~~~~~~i~~~~~~~v 258 (436)
++||++|++.+.+ +..+ +++.++++|+|+|++|++.... +|.++ ..+.+..++++
T Consensus 157 ~~pv~vKi~~~~~------~~~~-~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg---~~~~~~~l~~v 226 (300)
T TIGR01037 157 DVPVFAKLSPNVT------DITE-IAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSG---PAIKPIALRMV 226 (300)
T ss_pred CCCEEEECCCChh------hHHH-HHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccc---hhhhHHHHHHH
Confidence 9999999996442 2233 3556788999999998654210 11111 11223345778
Q ss_pred HHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcchh
Q 013789 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 307 (436)
Q Consensus 259 ~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 307 (436)
+++.+.+ ++|||+||||.+++|+.+++++|||+||+||+++.+||+|.
T Consensus 227 ~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~ 274 (300)
T TIGR01037 227 YDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFK 274 (300)
T ss_pred HHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHH
Confidence 8887765 89999999999999999999999999999999999999863
No 13
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=3.4e-33 Score=282.20 Aligned_cols=248 Identities=17% Similarity=0.122 Sum_probs=188.9
Q ss_pred CccccCCeecCCcEEEcCCC-------CCChHHHHHHH-HHcCCCcEEEeccccchhhhh---------cccchhhhh--
Q 013789 58 KAEMVARQYLPPWFSVAPMM-------DWTDNHYRTLA-RLISKHAWLYTEMLAAETIIY---------QQGNLDRFL-- 118 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMa-------gvtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~---------~~~~~~~~~-- 118 (436)
+|++|++++|||||++|||. .+|+..++++. +..||.|+++||.+.+..... ....+..+.
T Consensus 3 ~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l 82 (343)
T cd04734 3 SPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRL 82 (343)
T ss_pred CCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHH
Confidence 78999999999999999995 25888888887 455899999999888763321 111222222
Q ss_pred -c-cCCCCCcEEEEEcCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEecC
Q 013789 119 -A-FSPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINLNC 158 (436)
Q Consensus 119 -~-~~~~~~pi~vQL~g~~--------------------------------------p~~~~~aA~~~~~~G~d~IdLN~ 158 (436)
+ +|..+.++++||++.. .++|++||+++.++|||+||||+
T Consensus 83 ~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ 162 (343)
T cd04734 83 AEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQA 162 (343)
T ss_pred HHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 2 5778889999997310 27899999999999999999999
Q ss_pred --C-------CCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCC----CcHHHHHHHHHHHhhcC
Q 013789 159 --G-------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLS 225 (436)
Q Consensus 159 --g-------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~----~~~~~~~~~la~~~e~~ 225 (436)
| ||. .+.|+|+||++|+++.+++.||+++|++.++.++.||+|+++++. .+.++..+ +++.++++
T Consensus 163 ahGyLl~qFlsp~-~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~-~~~~l~~~ 240 (343)
T cd04734 163 AHGHLIDQFLSPL-TNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALE-IAARLAAE 240 (343)
T ss_pred ccchHHHHhhCCC-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHH-HHHHHHhc
Confidence 5 555 467889999999999999999999999999999999999998653 23556555 46677889
Q ss_pred C-ccEEEEccCccccc-CCCC-CCCCCCCC-ccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHH
Q 013789 226 P-TRHFIIHSRKALLN-GISP-AENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 300 (436)
Q Consensus 226 G-vd~I~vhgrt~~~~-G~~~-~~~~~i~~-~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l 300 (436)
| +|+|+||++..... +... ......++ ..++.+..+++.+ ++|||+||||.|+++++++++ .+||+||+||+++
T Consensus 241 G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~l 319 (343)
T cd04734 241 GLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHI 319 (343)
T ss_pred CCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc-CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhH
Confidence 8 89999975542111 0000 00001111 2356666666654 899999999999999999998 6699999999999
Q ss_pred hCCcchhh
Q 013789 301 QNPWYTLG 308 (436)
Q Consensus 301 ~~P~lf~~ 308 (436)
.||||+.+
T Consensus 320 adP~l~~k 327 (343)
T cd04734 320 ADPHLVAK 327 (343)
T ss_pred hCccHHHH
Confidence 99999754
No 14
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=2.5e-32 Score=274.85 Aligned_cols=244 Identities=13% Similarity=0.131 Sum_probs=186.6
Q ss_pred CccccCCeecCCcEEEcCCCC---------CChHHHHHHH-HHcCCCcEEEeccccchhhhh---------cccchhhhh
Q 013789 58 KAEMVARQYLPPWFSVAPMMD---------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIY---------QQGNLDRFL 118 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag---------vtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~---------~~~~~~~~~ 118 (436)
+|++|+++++||||++|||.. .|+..++++. +..||+|+++||.+.+..-.. ....+..+.
T Consensus 5 ~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r 84 (337)
T PRK13523 5 SPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLH 84 (337)
T ss_pred CCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHH
Confidence 799999999999999999942 3677888886 566899999999776643211 111222222
Q ss_pred c----cCCCCCcEEEEEcCC-----------------------C------------HHHHHHHHHHHHHCCCCEEEecCC
Q 013789 119 A----FSPEQHPIVLQIGGS-----------------------N------------LDNLAKATELANAYNYDEINLNCG 159 (436)
Q Consensus 119 ~----~~~~~~pi~vQL~g~-----------------------~------------p~~~~~aA~~~~~~G~d~IdLN~g 159 (436)
+ +|..+.++++||++. . .++|++||++++++|||+||||+|
T Consensus 85 ~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~a 164 (337)
T PRK13523 85 KLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGA 164 (337)
T ss_pred HHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 2 577888999999641 0 278999999999999999999999
Q ss_pred ---------CCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCC--CCCCcHHHHHHHHHHHhhcCCcc
Q 013789 160 ---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSLSPTR 228 (436)
Q Consensus 160 ---------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~--~~~~~~~~~~~~la~~~e~~Gvd 228 (436)
||. .|.|+|.||++|+++.+++.||+++||++++.||.+|++..- ....+.++..+ +++.+++.|+|
T Consensus 165 hGyLl~qFlSp~-~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~-i~~~l~~~gvD 242 (337)
T PRK13523 165 HGYLINEFLSPL-SNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQ-YAKWMKEQGVD 242 (337)
T ss_pred cchHHHHhcCCc-cCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHH-HHHHHHHcCCC
Confidence 788 568899999999999999999999999988999999999721 11124556555 45677889999
Q ss_pred EEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHc-CCCeeeehHHHHhCCcchh
Q 013789 229 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTL 307 (436)
Q Consensus 229 ~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~-Gad~VmiGRa~l~~P~lf~ 307 (436)
+|+||+++... .... ..+...+++..++++. .++||+++|+|.++++++++++. +||+|++||+++.|||++.
T Consensus 243 ~i~vs~g~~~~---~~~~--~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~ 316 (337)
T PRK13523 243 LIDVSSGAVVP---ARID--VYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPR 316 (337)
T ss_pred EEEeCCCCCCC---CCCC--CCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHH
Confidence 99999886311 0000 0011135566666555 48999999999999999999995 5999999999999999975
Q ss_pred hh
Q 013789 308 GH 309 (436)
Q Consensus 308 ~~ 309 (436)
+.
T Consensus 317 k~ 318 (337)
T PRK13523 317 IA 318 (337)
T ss_pred HH
Confidence 43
No 15
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=100.00 E-value=4.2e-32 Score=258.22 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=162.4
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccccchh--------hhhcccc--------hhhhh----ccCCCCCcEEEEEcCCC
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAET--------IIYQQGN--------LDRFL----AFSPEQHPIVLQIGGSN 135 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv~~~~--------l~~~~~~--------~~~~~----~~~~~~~pi~vQL~g~~ 135 (436)
|+|.||..|......+ +|+++-+.++.+. +....++ ...++ ..-.+..|+++|+.+++
T Consensus 1 mag~~d~~~~~~~~~~--~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~~~~vivnv~~~~ 78 (231)
T TIGR00736 1 MAGITDAEFCRKFKDL--FAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAESRALVSVNVRFVD 78 (231)
T ss_pred CCCcchHHHHHhcCcC--cCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhhcCCEEEEEecCC
Confidence 8999999998776543 6777777666542 2111111 01111 11135679999999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHH
Q 013789 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~ 215 (436)
++++.++++.+++ ++|+||||||||++++.+.|. |++|+++|+++.++++++++ .++||+||+|+|+++.+ ..+
T Consensus 79 ~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~-G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~-~~~-- 152 (231)
T TIGR00736 79 LEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGI-GQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLD-ELI-- 152 (231)
T ss_pred HHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCC-chhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcch-HHH--
Confidence 9999999999988 699999999999999888765 99999999999999999995 48999999999986432 223
Q ss_pred HHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeee
Q 013789 216 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (436)
Q Consensus 216 ~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~Vmi 295 (436)
+++.++++|+|+|+||++.. |. +..+|++++++++.+.++|||+||||+|++|+.+++++|||+||+
T Consensus 153 --~a~~l~~aGad~i~Vd~~~~---g~--------~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 153 --DALNLVDDGFDGIHVDAMYP---GK--------PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred --HHHHHHHcCCCEEEEeeCCC---CC--------chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 35667899999999996543 32 124599999998876459999999999999999999999999999
Q ss_pred hHHHHhC
Q 013789 296 GRAAYQN 302 (436)
Q Consensus 296 GRa~l~~ 302 (436)
|||++.+
T Consensus 220 gR~~l~~ 226 (231)
T TIGR00736 220 ARAILKG 226 (231)
T ss_pred cHhhccC
Confidence 9999865
No 16
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.98 E-value=4.5e-31 Score=266.51 Aligned_cols=244 Identities=15% Similarity=0.159 Sum_probs=182.6
Q ss_pred CccccCC-eecCCcEEEcCCCC--------CChHHHHHHH-HHcCCCcEEEeccccchhhhh------------cccchh
Q 013789 58 KAEMVAR-QYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIY------------QQGNLD 115 (436)
Q Consensus 58 ~p~~i~~-l~l~n~iilAPMag--------vtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~------------~~~~~~ 115 (436)
+|++|++ ++|||||++|||.. .|+..+.++. +..||+|+++||.+.+..... ..+.+.
T Consensus 3 ~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 82 (338)
T cd04733 3 QPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLE 82 (338)
T ss_pred CCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHH
Confidence 7999995 99999999999952 4778888886 566999999999776643221 111222
Q ss_pred hhhc----cCCCCCcEEEEEcCC-----------------------------C------------HHHHHHHHHHHHHCC
Q 013789 116 RFLA----FSPEQHPIVLQIGGS-----------------------------N------------LDNLAKATELANAYN 150 (436)
Q Consensus 116 ~~~~----~~~~~~pi~vQL~g~-----------------------------~------------p~~~~~aA~~~~~~G 150 (436)
.+.+ +|..+.++++||++. . .++|++||++++++|
T Consensus 83 ~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aG 162 (338)
T cd04733 83 AFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAG 162 (338)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 2222 577788899998740 0 267999999999999
Q ss_pred CCEEEecCCC---------CCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEecc------CCCCCCcHHH
Q 013789 151 YDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRI------GVDDHDSYNQ 213 (436)
Q Consensus 151 ~d~IdLN~gc---------P~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR~------G~~~~~~~~~ 213 (436)
||+||||+|| |. .+.|+|+||++|+++++++.|++++|+++++ +||.+|+.. |+ +.++
T Consensus 163 fDgVeih~a~gyLl~qFlsp~-~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~----~~ee 237 (338)
T cd04733 163 FDGVQIHAAHGYLLSQFLSPL-TNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGF----TEED 237 (338)
T ss_pred CCEEEEchhhhhHHHHhcCCc-CCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCC----CHHH
Confidence 9999999997 66 4678999999999999999999999999884 789999873 44 2344
Q ss_pred HHHHHHHHhhcCCccEEEEccCcccccCCCC-CCC-CCC-CCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHc-C
Q 013789 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISP-AEN-RTI-PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-G 289 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~-~~~-~~i-~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~-G 289 (436)
..+ +++.+++.|+|+|.||+++........ ... ... ....+++..++++.+ ++||+++|+|.++++++++++. +
T Consensus 238 a~~-ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~t~~~a~~~l~~g~ 315 (338)
T cd04733 238 ALE-VVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-KTPLMVTGGFRTRAAMEQALASGA 315 (338)
T ss_pred HHH-HHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 444 356678899999999998642111100 000 000 111245555666654 9999999999999999999994 5
Q ss_pred CCeeeehHHHHhCCcchhh
Q 013789 290 AHHVMVGRAAYQNPWYTLG 308 (436)
Q Consensus 290 ad~VmiGRa~l~~P~lf~~ 308 (436)
||+|++||+++.||||+.+
T Consensus 316 aD~V~lgR~~iadP~~~~k 334 (338)
T cd04733 316 VDGIGLARPLALEPDLPNK 334 (338)
T ss_pred CCeeeeChHhhhCccHHHH
Confidence 9999999999999999743
No 17
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.97 E-value=1.2e-30 Score=267.15 Aligned_cols=247 Identities=14% Similarity=0.147 Sum_probs=182.5
Q ss_pred CccccCCeecCCcEEEcCCCC---------CChHHHHHHH-HHcCCCcEEEeccccchhhh------------hccc-ch
Q 013789 58 KAEMVARQYLPPWFSVAPMMD---------WTDNHYRTLA-RLISKHAWLYTEMLAAETII------------YQQG-NL 114 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag---------vtd~~fr~~~-~~~Gg~gl~~temv~~~~l~------------~~~~-~~ 114 (436)
+|++|++++|||||++|||.. .|+..++++. +..||+|+++||.+.+.... ...+ .+
T Consensus 3 ~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i 82 (382)
T cd02931 3 EPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFI 82 (382)
T ss_pred CCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHh
Confidence 799999999999999999942 3677788886 45589999999987664221 0111 12
Q ss_pred hhhhc----cCCCCCcEEEEEcCC-----------------------------C------------HHHHHHHHHHHHHC
Q 013789 115 DRFLA----FSPEQHPIVLQIGGS-----------------------------N------------LDNLAKATELANAY 149 (436)
Q Consensus 115 ~~~~~----~~~~~~pi~vQL~g~-----------------------------~------------p~~~~~aA~~~~~~ 149 (436)
..+.+ +|..+.++++||++. . .++|++||++++++
T Consensus 83 ~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~A 162 (382)
T cd02931 83 RTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEA 162 (382)
T ss_pred HHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 22222 577888999999632 0 16799999999999
Q ss_pred CCCEEEecC---CC-------CCCccccCCCccccccCChHHHHHHHHHHhhcc--CCcEEEEecc-----CCCC-----
Q 013789 150 NYDEINLNC---GC-------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-----GVDD----- 207 (436)
Q Consensus 150 G~d~IdLN~---gc-------P~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~--~iPvsvKiR~-----G~~~----- 207 (436)
|||+||||+ || |. .+.|+|+||++|+++++++.||+++|++++ ++||.+|++. +++.
T Consensus 163 GfDgVEih~ah~GyLl~qFLSp~-~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~ 241 (382)
T cd02931 163 GFDGVEIHAVHEGYLLDQFTISL-FNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPG 241 (382)
T ss_pred CCCEEEEeccccChHHHHhcCCc-cCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccc
Confidence 999999998 76 44 567899999999999999999999999988 5799999985 1111
Q ss_pred ------CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCcc-HHHHHHHHhcCCCcEEEEeCCCCCHH
Q 013789 208 ------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVD 280 (436)
Q Consensus 208 ------~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~-~~~v~~l~~~~~~iPVIanGgI~s~~ 280 (436)
.-+.++..+ +++.++++|+|+|+||+++.......... ...++.. +.++..+++. .++|||++|+|.+++
T Consensus 242 ~~~~~~g~~~e~~~~-~~~~l~~~gvD~l~vs~g~~~~~~~~~~~-~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~ 318 (382)
T cd02931 242 EEFQEKGRDLEEGLK-AAKILEEAGYDALDVDAGSYDAWYWNHPP-MYQKKGMYLPYCKALKEV-VDVPVIMAGRMEDPE 318 (382)
T ss_pred cccccCCCCHHHHHH-HHHHHHHhCCCEEEeCCCCCcccccccCC-ccCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHH
Confidence 113455555 45677889999999998864211000000 0111111 3445555555 489999999999999
Q ss_pred HHHHHHH-cCCCeeeehHHHHhCCcchhh
Q 013789 281 EVNAALR-KGAHHVMVGRAAYQNPWYTLG 308 (436)
Q Consensus 281 da~~~l~-~Gad~VmiGRa~l~~P~lf~~ 308 (436)
++.++++ .+||+|++||+++.||||+.+
T Consensus 319 ~~~~~l~~g~~D~V~~gR~~ladP~l~~k 347 (382)
T cd02931 319 LASEAINEGIADMISLGRPLLADPDVVNK 347 (382)
T ss_pred HHHHHHHcCCCCeeeechHhHhCccHHHH
Confidence 9999999 559999999999999999754
No 18
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.97 E-value=6.7e-31 Score=266.64 Aligned_cols=243 Identities=16% Similarity=0.131 Sum_probs=184.0
Q ss_pred CccccCC-eecCCcEEEcCCCC--------CChHHHHHHHHHcCCCcEEEeccccchhhhh---------cccchhhhhc
Q 013789 58 KAEMVAR-QYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETIIY---------QQGNLDRFLA 119 (436)
Q Consensus 58 ~p~~i~~-l~l~n~iilAPMag--------vtd~~fr~~~~~~Gg~gl~~temv~~~~l~~---------~~~~~~~~~~ 119 (436)
+|++|++ ++|||||++|||.. +|+..+.++.+.+.|+|+++||.+.+..-.. ....+..+.+
T Consensus 3 ~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~ 82 (353)
T cd04735 3 EPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRK 82 (353)
T ss_pred CCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHHHH
Confidence 7999999 99999999999952 5788888887544349999999887753211 1222222222
Q ss_pred ----cCCCCCcEEEEEcCCC----------------------------------------HHHHHHHHHHHHHCCCCEEE
Q 013789 120 ----FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEIN 155 (436)
Q Consensus 120 ----~~~~~~pi~vQL~g~~----------------------------------------p~~~~~aA~~~~~~G~d~Id 155 (436)
+|..+..+++||++.. .++|++||++++++|||+||
T Consensus 83 l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVe 162 (353)
T cd04735 83 LAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVE 162 (353)
T ss_pred HHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 5778889999996310 16799999999999999999
Q ss_pred ecCC---------CCCCccccCCCccccccCChHHHHHHHHHHhhccC----CcEEEEeccCCCCC----CcHHHHHHHH
Q 013789 156 LNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN----VPVSVKCRIGVDDH----DSYNQLCDFI 218 (436)
Q Consensus 156 LN~g---------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~----iPvsvKiR~G~~~~----~~~~~~~~~l 218 (436)
||++ ||. .+.|+|+||++++++.+++.||+++||++++ .++.|++|++.++. .+.++..+ +
T Consensus 163 ih~ahGyLl~qFlsp~-~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~-i 240 (353)
T cd04735 163 IHGANGYLIQQFFSPH-SNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLA-L 240 (353)
T ss_pred EccccchHHHHhcCCc-cCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHH-H
Confidence 9986 788 4678999999999999999999999999987 67888888876542 23556555 4
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
++.+++.|+|+|+||++... ... ...+...+..+..+++.. .++|||++|||.|++++.++++.|||+|++||
T Consensus 241 ~~~L~~~GvD~I~Vs~g~~~--~~~----~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR 314 (353)
T cd04735 241 VDKLADKGLDYLHISLWDFD--RKS----RRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGR 314 (353)
T ss_pred HHHHHHcCCCEEEeccCccc--ccc----ccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhH
Confidence 56778899999999975421 100 011111234444444433 37999999999999999999998999999999
Q ss_pred HHHhCCcchhh
Q 013789 298 AAYQNPWYTLG 308 (436)
Q Consensus 298 a~l~~P~lf~~ 308 (436)
+++.||+++.+
T Consensus 315 ~liadPdl~~k 325 (353)
T cd04735 315 GLLVDPDWVEK 325 (353)
T ss_pred HHHhCccHHHH
Confidence 99999999743
No 19
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.97 E-value=7.1e-31 Score=263.68 Aligned_cols=247 Identities=15% Similarity=0.122 Sum_probs=186.9
Q ss_pred CccccCCeecCCcEEEcCCCC--------CChHHHHHHHH-HcCCCcEEEeccccchhhhh---------cccchhhhhc
Q 013789 58 KAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLAR-LISKHAWLYTEMLAAETIIY---------QQGNLDRFLA 119 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag--------vtd~~fr~~~~-~~Gg~gl~~temv~~~~l~~---------~~~~~~~~~~ 119 (436)
+|++|++++|+|||++|||.. .|+..++++.+ ..||+|+++||.+.+..... ....+..+.+
T Consensus 2 ~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
T cd02803 2 SPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRK 81 (327)
T ss_pred CCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHH
Confidence 689999999999999999952 57888888874 55899999999887754321 1222333322
Q ss_pred ----cCCCCCcEEEEEcCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEec
Q 013789 120 ----FSPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINLN 157 (436)
Q Consensus 120 ----~~~~~~pi~vQL~g~~--------------------------------------p~~~~~aA~~~~~~G~d~IdLN 157 (436)
+|..+.++++||++.. .++|+++|++++++|||+||||
T Consensus 82 ~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih 161 (327)
T cd02803 82 LTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIH 161 (327)
T ss_pred HHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5777888889986310 2789999999999999999999
Q ss_pred CC---------CCCCccccCCCccccccCChHHHHHHHHHHhhcc--CCcEEEEeccCCCCC--CcHHHHHHHHHHHhhc
Q 013789 158 CG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH--DSYNQLCDFIYKVSSL 224 (436)
Q Consensus 158 ~g---------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~--~iPvsvKiR~G~~~~--~~~~~~~~~la~~~e~ 224 (436)
++ ||.. +.|+|+||++++++++++.|++++|++.+ ++||.+|++...... .+.++..+ +++.+++
T Consensus 162 ~~~gyL~~qFlsp~~-n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~-la~~l~~ 239 (327)
T cd02803 162 GAHGYLLSQFLSPYT-NKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIE-IAKALEE 239 (327)
T ss_pred chhhhHHHHhcCccc-cCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHH-HHHHHHH
Confidence 98 6763 67899999999999999999999999988 689999998753211 23445544 3566788
Q ss_pred CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHc-CCCeeeehHHHHhCC
Q 013789 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNP 303 (436)
Q Consensus 225 ~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~-Gad~VmiGRa~l~~P 303 (436)
.|+|+|+++++...................++.+..+.+.+ ++||+++|||.++++++++++. |||+|++||+++.||
T Consensus 240 ~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP 318 (327)
T cd02803 240 AGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADP 318 (327)
T ss_pred cCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCc
Confidence 99999999987642211100000011123356666666665 8999999999999999999995 899999999999999
Q ss_pred cchh
Q 013789 304 WYTL 307 (436)
Q Consensus 304 ~lf~ 307 (436)
+|+.
T Consensus 319 ~l~~ 322 (327)
T cd02803 319 DLPN 322 (327)
T ss_pred cHHH
Confidence 9864
No 20
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.97 E-value=2.7e-30 Score=256.17 Aligned_cols=228 Identities=23% Similarity=0.312 Sum_probs=178.0
Q ss_pred ccCCeecCCcEEEcCCCCC--ChHHHHHHHHHcCCCcEEEeccccchhhhhccc-c------------------hhhhhc
Q 013789 61 MVARQYLPPWFSVAPMMDW--TDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-N------------------LDRFLA 119 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMagv--td~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~-~------------------~~~~~~ 119 (436)
++.++.++|||++| +|. ++..++.++.. ||+|.++|++++.+....+.. . .+.+++
T Consensus 3 ~~~G~~~~nP~~~a--ag~~~~~~~~~~~~~~-g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~ 79 (296)
T cd04740 3 ELAGLRLKNPVILA--SGTFGFGEELSRVADL-GKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLE 79 (296)
T ss_pred EECCEEcCCCCEEC--CCCCCCHHHHHHHHhc-CCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHH
Confidence 37889999999999 444 88888888764 569999999999875432111 0 122222
Q ss_pred ----c-CCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC
Q 013789 120 ----F-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (436)
Q Consensus 120 ----~-~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~ 194 (436)
. +..+.|+++||+|+++++|+++|++++++|+|+||||++||..+ +. |+.+..+++++.+++++|++.++
T Consensus 80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~-g~~~~~~~~~~~eiv~~vr~~~~ 154 (296)
T cd04740 80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GG-GMAFGTDPEAVAEIVKAVKKATD 154 (296)
T ss_pred HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CC-cccccCCHHHHHHHHHHHHhccC
Confidence 1 34578999999999999999999999999999999999999853 22 77888999999999999999999
Q ss_pred CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccc---------------cCCCCCCCCCCCCccHHHHH
Q 013789 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---------------NGISPAENRTIPPLKYEYYY 259 (436)
Q Consensus 195 iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~---------------~G~~~~~~~~i~~~~~~~v~ 259 (436)
+||++|++.+.+ +..+ +++.++++|+|+|++++++... +|.++ ..+.+..++++.
T Consensus 155 ~Pv~vKl~~~~~---~~~~----~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg---~~~~~~~~~~i~ 224 (296)
T cd04740 155 VPVIVKLTPNVT---DIVE----IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG---PAIKPIALRMVY 224 (296)
T ss_pred CCEEEEeCCCch---hHHH----HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC---cccchHHHHHHH
Confidence 999999986542 2222 3456678999999986543210 12222 223444578888
Q ss_pred HHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcchh
Q 013789 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 307 (436)
Q Consensus 260 ~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 307 (436)
++.+.+ ++|||++|||.|++|+.+++++|||+||+||+++.+||+|.
T Consensus 225 ~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~ 271 (296)
T cd04740 225 QVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFK 271 (296)
T ss_pred HHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHH
Confidence 887765 89999999999999999999999999999999999999863
No 21
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.97 E-value=2.1e-30 Score=263.11 Aligned_cols=247 Identities=16% Similarity=0.137 Sum_probs=184.0
Q ss_pred CccccCCeecCCcEEEcCCC-------CCChHHHHHHH-HHcCCCcEEEeccccchhhh---------hcccchhhhhc-
Q 013789 58 KAEMVARQYLPPWFSVAPMM-------DWTDNHYRTLA-RLISKHAWLYTEMLAAETII---------YQQGNLDRFLA- 119 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMa-------gvtd~~fr~~~-~~~Gg~gl~~temv~~~~l~---------~~~~~~~~~~~- 119 (436)
+|++|++++|||||++|||. ..|+..++++. +..||+|+++||.+.+.... +....+..+.+
T Consensus 3 ~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l 82 (353)
T cd02930 3 SPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLI 82 (353)
T ss_pred CCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHH
Confidence 79999999999999999996 24788888887 45589999999987664321 11112222222
Q ss_pred ---cCCCCCcEEEEEcCC----------------------C------------HHHHHHHHHHHHHCCCCEEEecCC---
Q 013789 120 ---FSPEQHPIVLQIGGS----------------------N------------LDNLAKATELANAYNYDEINLNCG--- 159 (436)
Q Consensus 120 ---~~~~~~pi~vQL~g~----------------------~------------p~~~~~aA~~~~~~G~d~IdLN~g--- 159 (436)
+|..+.++++||++. . .++|++||+++.++|||+||||.+
T Consensus 83 ~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGy 162 (353)
T cd02930 83 TDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGY 162 (353)
T ss_pred HHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccch
Confidence 577888999999631 1 278999999999999999999875
Q ss_pred ------CCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCC----CcHHHHHHHHHHHhhcCCccE
Q 013789 160 ------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRH 229 (436)
Q Consensus 160 ------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~----~~~~~~~~~la~~~e~~Gvd~ 229 (436)
||. .+.|+|+||++++++++++.+++++||+.++.++.+++|+++.+. .+.++..+ +++.++++|+|+
T Consensus 163 Ll~qFlsp~-~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~-i~~~Le~~G~d~ 240 (353)
T cd02930 163 LINQFLAPR-TNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVA-LAKALEAAGADI 240 (353)
T ss_pred HHHHhcCCc-cCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHH-HHHHHHHcCCCE
Confidence 887 467899999999999999999999999999888888888876542 24455555 466778899999
Q ss_pred EEEccCcccccCCCCCCCCCCCCccHH-HHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCCcchh
Q 013789 230 FIIHSRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 307 (436)
Q Consensus 230 I~vhgrt~~~~G~~~~~~~~i~~~~~~-~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~ 307 (436)
|+|..... ...........++..|. ...++++. .++||+++|+|.++++++++++ .+||+||+||+++.||||+.
T Consensus 241 i~vs~g~~--e~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~ 317 (353)
T cd02930 241 LNTGIGWH--EARVPTIATSVPRGAFAWATAKLKRA-VDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVA 317 (353)
T ss_pred EEeCCCcC--CCCCccccccCCchhhHHHHHHHHHh-CCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHH
Confidence 99954211 00000000111222233 33455554 5999999999999999999999 55999999999999999975
Q ss_pred hh
Q 013789 308 GH 309 (436)
Q Consensus 308 ~~ 309 (436)
+.
T Consensus 318 k~ 319 (353)
T cd02930 318 KA 319 (353)
T ss_pred HH
Confidence 43
No 22
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.97 E-value=3.4e-30 Score=259.67 Aligned_cols=236 Identities=17% Similarity=0.134 Sum_probs=182.1
Q ss_pred CccccCCeecCCcEEEcCCCC--------CChHHHHHHHHHcCCCcEEEeccccchhhhh---------cccchhhh---
Q 013789 58 KAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETIIY---------QQGNLDRF--- 117 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag--------vtd~~fr~~~~~~Gg~gl~~temv~~~~l~~---------~~~~~~~~--- 117 (436)
+|++|++++|||||++|||.. +|+..++++.+.+.| |+++||.+.+..... ....+..+
T Consensus 4 ~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~l 82 (338)
T cd02933 4 SPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKV 82 (338)
T ss_pred CCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHHHH
Confidence 799999999999999999952 477888888766666 999999887753321 11112222
Q ss_pred hc-cCCCCCcEEEEEcC-----------------------------------C--C------------HHHHHHHHHHHH
Q 013789 118 LA-FSPEQHPIVLQIGG-----------------------------------S--N------------LDNLAKATELAN 147 (436)
Q Consensus 118 ~~-~~~~~~pi~vQL~g-----------------------------------~--~------------p~~~~~aA~~~~ 147 (436)
.+ +|..+.++++||.+ . . .++|++||++++
T Consensus 83 a~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~ 162 (338)
T cd02933 83 TDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAI 162 (338)
T ss_pred HHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 57778889999853 0 1 167999999999
Q ss_pred HCCCCEEEecCCC---------CCCccccCCCccccccCChHHHHHHHHHHhhccCC-cEEEEeccCCC-----CCCcHH
Q 013789 148 AYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGVD-----DHDSYN 212 (436)
Q Consensus 148 ~~G~d~IdLN~gc---------P~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i-PvsvKiR~G~~-----~~~~~~ 212 (436)
++|||+||||++| |. .+.|+|+||++|+++.+++.||+++||++++. ||.+|++..-. ...+.+
T Consensus 163 ~aGfDgVeih~ahGyLl~qFlSp~-~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~e 241 (338)
T cd02933 163 EAGFDGVEIHGANGYLIDQFLRDG-SNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEA 241 (338)
T ss_pred HcCCCEEEEccccchhHHHhcCCc-cCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHH
Confidence 9999999999999 76 46889999999999999999999999998865 89999886311 112455
Q ss_pred HHHHHHHHHhhcCCccEEEE-ccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCC
Q 013789 213 QLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 290 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~v-hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Ga 290 (436)
+..+ +++.+++.|+|+|.| ||+..... ....+++...+++.+ ++|||++|+|. +++++++++ .+|
T Consensus 242 e~~~-~~~~l~~~g~d~i~vs~g~~~~~~----------~~~~~~~~~~ik~~~-~ipvi~~G~i~-~~~a~~~l~~g~~ 308 (338)
T cd02933 242 TFSY-LAKELNKRGLAYLHLVEPRVAGNP----------EDQPPDFLDFLRKAF-KGPLIAAGGYD-AESAEAALADGKA 308 (338)
T ss_pred HHHH-HHHHHHHcCCcEEEEecCCCCCcc----------cccchHHHHHHHHHc-CCCEEEECCCC-HHHHHHHHHcCCC
Confidence 6555 467778899999999 56543111 122366666666654 89999999997 999999999 459
Q ss_pred CeeeehHHHHhCCcchhh
Q 013789 291 HHVMVGRAAYQNPWYTLG 308 (436)
Q Consensus 291 d~VmiGRa~l~~P~lf~~ 308 (436)
|+|++||+++.||||+.+
T Consensus 309 D~V~~gR~~ladP~~~~k 326 (338)
T cd02933 309 DLVAFGRPFIANPDLVER 326 (338)
T ss_pred CEEEeCHhhhhCcCHHHH
Confidence 999999999999999754
No 23
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.97 E-value=1e-29 Score=256.57 Aligned_cols=242 Identities=18% Similarity=0.222 Sum_probs=181.5
Q ss_pred CccccCCeecCCcEEEcCCCC-------CChHHHHHHH-HHcCCCcEEEeccccchhhhh---------cccchhhhhc-
Q 013789 58 KAEMVARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIY---------QQGNLDRFLA- 119 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag-------vtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~---------~~~~~~~~~~- 119 (436)
+|++|++++|||||++|||.. .|+..+.++. +..||+|+++||.+.+..... ....+..+.+
T Consensus 3 ~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l 82 (336)
T cd02932 3 TPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRI 82 (336)
T ss_pred CCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHH
Confidence 699999999999999999952 4777888886 566899999999877653321 1112222222
Q ss_pred ---cCCCCCcEEEEEcCC---------------------------------------C------------HHHHHHHHHH
Q 013789 120 ---FSPEQHPIVLQIGGS---------------------------------------N------------LDNLAKATEL 145 (436)
Q Consensus 120 ---~~~~~~pi~vQL~g~---------------------------------------~------------p~~~~~aA~~ 145 (436)
+|..+..+++||++. . .++|+++|++
T Consensus 83 ~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~ 162 (336)
T cd02932 83 VDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARR 162 (336)
T ss_pred HHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 577788899998421 0 2679999999
Q ss_pred HHHCCCCEEEecCCC---------CCCccccCCCccccccCChHHHHHHHHHHhhcc--CCcEEEEeccCC--CCCCcHH
Q 013789 146 ANAYNYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDSYN 212 (436)
Q Consensus 146 ~~~~G~d~IdLN~gc---------P~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~--~iPvsvKiR~G~--~~~~~~~ 212 (436)
+.++|||+||||+|| |. .+.|+|+||++|+++++++.|++++|++.+ ++||.+|++..- ....+.+
T Consensus 163 a~~aGfDgVei~~~~gyLl~qFlsp~-~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~ 241 (336)
T cd02932 163 AVEAGFDVIEIHAAHGYLLHQFLSPL-SNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLE 241 (336)
T ss_pred HHHcCCCEEEEccccccHHHHhcCCc-cCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHH
Confidence 999999999999987 65 457889999999999999999999999998 689999988521 1111344
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCC-ccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcC-C
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A 290 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~-~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~G-a 290 (436)
+..+ +++.+++.|+|+|.+|+... .........+ ..++...++++.+ ++||+++|+|.++++++++++.| |
T Consensus 242 e~~~-ia~~Le~~gvd~iev~~g~~-----~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~a 314 (336)
T cd02932 242 DSVE-LAKALKELGVDLIDVSSGGN-----SPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRA 314 (336)
T ss_pred HHHH-HHHHHHHcCCCEEEECCCCC-----CcccccCCCccccHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 5554 35667889999999985321 0000011111 1245556666654 89999999999999999999965 9
Q ss_pred CeeeehHHHHhCCcchh
Q 013789 291 HHVMVGRAAYQNPWYTL 307 (436)
Q Consensus 291 d~VmiGRa~l~~P~lf~ 307 (436)
|+||+||+++.||+|+.
T Consensus 315 D~V~~gR~~i~dP~~~~ 331 (336)
T cd02932 315 DLVALGRELLRNPYWPL 331 (336)
T ss_pred CeehhhHHHHhCccHHH
Confidence 99999999999999864
No 24
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.97 E-value=1.8e-29 Score=250.69 Aligned_cols=232 Identities=18% Similarity=0.209 Sum_probs=174.3
Q ss_pred ccCCeecCCcEEEcCCC-CCChHHHHHHHHHcCCCcEEEeccccchhhhhccc------------------c--------
Q 013789 61 MVARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG------------------N-------- 113 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMa-gvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~------------------~-------- 113 (436)
++.++.++|||++|.=. +-+...++.+.. . |+|.+.+.-++.++...+++ +
T Consensus 5 ~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~-~-G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~ 82 (299)
T cd02940 5 TFCGIKFPNPFGLASAPPTTSYPMIRRAFE-A-GWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKP 82 (299)
T ss_pred EECCEEcCCCCEeCCcCCCCCHHHHHHHHH-h-CCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccC
Confidence 47889999999999821 223455566554 3 58888888777762111100 0
Q ss_pred hhhhh----cc-CC-CCCcEEEEEcCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHH
Q 013789 114 LDRFL----AF-SP-EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (436)
Q Consensus 114 ~~~~~----~~-~~-~~~pi~vQL~g~-~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv 186 (436)
.+.++ +. .. .+.|+++|++|. ++++|.++|+.+++.|+|+||||++||+.. .+++ +|+.++++++.+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-~~~~-~G~~l~~~~~~~~~iv 160 (299)
T cd02940 83 LEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-PERG-MGAAVGQDPELVEEIC 160 (299)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CCCC-CchhhccCHHHHHHHH
Confidence 11111 11 11 268999999998 999999999999999999999999999973 4444 5999999999999999
Q ss_pred HHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEc---------------------cCcccccCCCCC
Q 013789 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---------------------SRKALLNGISPA 245 (436)
Q Consensus 187 ~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vh---------------------grt~~~~G~~~~ 245 (436)
+++++.+++||+||+|.+.+ +..++ ++.++++|+|+|+++ +|+. .+|+++
T Consensus 161 ~~v~~~~~~Pv~vKl~~~~~---~~~~~----a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~-~gg~sG- 231 (299)
T cd02940 161 RWVREAVKIPVIAKLTPNIT---DIREI----ARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTT-YGGYSG- 231 (299)
T ss_pred HHHHHhcCCCeEEECCCCch---hHHHH----HHHHHHcCCCEEEEecccccccccccccCCccccccCCCC-cCcccC-
Confidence 99999999999999997543 23333 445678999999854 3332 123333
Q ss_pred CCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh-CCcchh
Q 013789 246 ENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTL 307 (436)
Q Consensus 246 ~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~ 307 (436)
..+.+..|++++++++... ++|||+||||.+++|+.+++.+|||+||||||++. .|.++.
T Consensus 232 --~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~ 293 (299)
T cd02940 232 --PAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVD 293 (299)
T ss_pred --CCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHH
Confidence 2345566899999988752 79999999999999999999999999999999888 788753
No 25
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.97 E-value=1.7e-29 Score=257.73 Aligned_cols=245 Identities=12% Similarity=0.085 Sum_probs=178.9
Q ss_pred CccccCCeecCCcEEEcCCCC----CChHHHH-HHH-HHcCCCcEEEeccccchhhhh----------cccchhhhhc--
Q 013789 58 KAEMVARQYLPPWFSVAPMMD----WTDNHYR-TLA-RLISKHAWLYTEMLAAETIIY----------QQGNLDRFLA-- 119 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag----vtd~~fr-~~~-~~~Gg~gl~~temv~~~~l~~----------~~~~~~~~~~-- 119 (436)
+|++|++++|||||++|||.. .++..+. ++. +..||+||++||.+.+..-.. ....+..+.+
T Consensus 10 ~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~ 89 (370)
T cd02929 10 EPIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMT 89 (370)
T ss_pred CCccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHH
Confidence 799999999999999999952 3344443 333 577899999999877653211 1112222222
Q ss_pred --cCCCCCcEEEEEcCC-----------------------------C------------HHHHHHHHHHHHHCCCCEEEe
Q 013789 120 --FSPEQHPIVLQIGGS-----------------------------N------------LDNLAKATELANAYNYDEINL 156 (436)
Q Consensus 120 --~~~~~~pi~vQL~g~-----------------------------~------------p~~~~~aA~~~~~~G~d~IdL 156 (436)
+|..+.++++||++. . .++|++||++++++|||+|||
T Consensus 90 ~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEi 169 (370)
T cd02929 90 DAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDIVYV 169 (370)
T ss_pred HHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 577788899998521 0 267999999999999999999
Q ss_pred cCCC---------CCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCC------CcHHHHHHHHHHH
Q 013789 157 NCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH------DSYNQLCDFIYKV 221 (436)
Q Consensus 157 N~gc---------P~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~------~~~~~~~~~la~~ 221 (436)
|++| |. .+.|+|+||++++++.+++.||+++|+++++.++.|++|++.++. .+.++..++ +++
T Consensus 170 h~ahGyLl~QFlSp~-~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~-~~~ 247 (370)
T cd02929 170 YAAHGYLPLQFLLPR-YNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEF-VEM 247 (370)
T ss_pred cccccchHHHhhCcc-ccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHH-HHH
Confidence 9999 66 468899999999999999999999999999878888888876542 135555554 455
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCC-ccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 299 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~-~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~ 299 (436)
+++. +|++.+++......+.. .+..+. ..+++...+++. .++|||++|+|.+++++.++++ .+||+|++||++
T Consensus 248 l~~~-~D~i~vs~g~~~~~~~~---~~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ 322 (370)
T cd02929 248 LDEL-PDLWDVNVGDWANDGED---SRFYPEGHQEPYIKFVKQV-TSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPS 322 (370)
T ss_pred HHhh-CCEEEecCCCccccccc---cccCCccccHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHh
Confidence 6644 89999975432111110 011111 124455555555 4899999999999999999999 559999999999
Q ss_pred HhCCcchhhh
Q 013789 300 YQNPWYTLGH 309 (436)
Q Consensus 300 l~~P~lf~~~ 309 (436)
+.||||+.+.
T Consensus 323 ladP~l~~k~ 332 (370)
T cd02929 323 IADPFLPKKI 332 (370)
T ss_pred hhCchHHHHH
Confidence 9999997543
No 26
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.97 E-value=1.7e-29 Score=255.85 Aligned_cols=239 Identities=18% Similarity=0.169 Sum_probs=179.8
Q ss_pred CccccCCeecCCcEEEcCCCC-------CChHHHHHHH-HHcCCCcEEEeccccchhhhh----------cccchhhhh-
Q 013789 58 KAEMVARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIY----------QQGNLDRFL- 118 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag-------vtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~----------~~~~~~~~~- 118 (436)
+|++|+++++||||+++||.. +|+..+.++. +..||+|+++||.+.+..-.. ....+..+.
T Consensus 3 ~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~ 82 (361)
T cd04747 3 TPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKK 82 (361)
T ss_pred CCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHH
Confidence 689999999999999999952 4888888886 555899999999887742111 111122222
Q ss_pred --c-cCCCCCcEEEEEcCCC----------------------------------------HHHHHHHHHHHHHCCCCEEE
Q 013789 119 --A-FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEIN 155 (436)
Q Consensus 119 --~-~~~~~~pi~vQL~g~~----------------------------------------p~~~~~aA~~~~~~G~d~Id 155 (436)
+ +|..+.++++||++.. .++|++||++++++|||+||
T Consensus 83 l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVe 162 (361)
T cd04747 83 VVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIE 162 (361)
T ss_pred HHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 2 5778889999995310 15799999999999999999
Q ss_pred ecCCC---------CCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEeccCCC--C-----CCcHHHHHHH
Q 013789 156 LNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVD--D-----HDSYNQLCDF 217 (436)
Q Consensus 156 LN~gc---------P~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR~G~~--~-----~~~~~~~~~~ 217 (436)
||++| |. .+.|+|+||++++++.+++.||+++|+++++ +||.+|++. ++ + ..+.++..+
T Consensus 163 ih~ahGyLl~qFLSp~-~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~~~~~~~~~g~~~~e~~~- 239 (361)
T cd04747 163 LHGAHGYLIDQFFWAG-TNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WKQQDYTARLADTPDELEA- 239 (361)
T ss_pred EecccchHHHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-ccccccccCCCCCHHHHHH-
Confidence 99999 77 5688999999999999999999999999884 899999984 21 1 134555555
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCC------------------CCH
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI------------------NTV 279 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI------------------~s~ 279 (436)
+++.+++.|+|+|++.++... .+. .....+.+...+++. .++||+++|+| .|+
T Consensus 240 ~~~~l~~~gvd~i~vs~g~~~----~~~----~~~~~~~~~~~~k~~-~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~ 310 (361)
T cd04747 240 LLAPLVDAGVDIFHCSTRRFW----EPE----FEGSELNLAGWTKKL-TGLPTITVGSVGLDGDFIGAFAGDEGASPASL 310 (361)
T ss_pred HHHHHHHcCCCEEEecCCCcc----CCC----cCccchhHHHHHHHH-cCCCEEEECCcccccccccccccccccccCCH
Confidence 355678899999888654210 000 011123444444444 48999999999 699
Q ss_pred HHHHHHHH-cCCCeeeehHHHHhCCcchhh
Q 013789 280 DEVNAALR-KGAHHVMVGRAAYQNPWYTLG 308 (436)
Q Consensus 280 ~da~~~l~-~Gad~VmiGRa~l~~P~lf~~ 308 (436)
++++++++ .+||+|++||+++.||||+.+
T Consensus 311 ~~a~~~l~~g~~D~V~~gR~~iadP~~~~k 340 (361)
T cd04747 311 DRLLERLERGEFDLVAVGRALLSDPAWVAK 340 (361)
T ss_pred HHHHHHHHCCCCCeehhhHHHHhCcHHHHH
Confidence 99999999 569999999999999999644
No 27
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.97 E-value=6.5e-29 Score=251.05 Aligned_cols=245 Identities=18% Similarity=0.172 Sum_probs=182.2
Q ss_pred CccccCCeecCCcEEEcCCCC--------CChHHHHHHH-HHcCCCcEEEeccccchhhhhc---------ccchhhhhc
Q 013789 58 KAEMVARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDRFLA 119 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag--------vtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~~---------~~~~~~~~~ 119 (436)
+|+++++++|+|||++|||.. .|+...+++. |..||+|+++||...+..-... ...+..+.+
T Consensus 8 ~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~ 87 (363)
T COG1902 8 EPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKR 87 (363)
T ss_pred CCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHH
Confidence 899999999999999999963 5778899986 6778899999997766533221 111333322
Q ss_pred ----cCCCCCcEEEEEcCCC----------------------------------------HHHHHHHHHHHHHCCCCEEE
Q 013789 120 ----FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEIN 155 (436)
Q Consensus 120 ----~~~~~~pi~vQL~g~~----------------------------------------p~~~~~aA~~~~~~G~d~Id 155 (436)
+|..+.++++||++.. .++|++||++++++|||+||
T Consensus 88 vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVE 167 (363)
T COG1902 88 LTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVE 167 (363)
T ss_pred HHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 6888999999998432 17899999999999999999
Q ss_pred ecCC---------CCCCccccCCCccccccCChHHHHHHHHHHhhccCC--cEEEEeccCCC-C--CCcHHHHHHHHHHH
Q 013789 156 LNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVD-D--HDSYNQLCDFIYKV 221 (436)
Q Consensus 156 LN~g---------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i--PvsvKiR~G~~-~--~~~~~~~~~~la~~ 221 (436)
||.+ +|. .|.|+|+||++++|+.+++.||+++|+++++. ||.+++...-. . ..+.++..+ +++.
T Consensus 168 IH~AhGYLi~qFlsp~-tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~-la~~ 245 (363)
T COG1902 168 IHGAHGYLLSQFLSPL-TNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVE-LAKA 245 (363)
T ss_pred EeeccchHHHHhcCCc-cCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHH-HHHH
Confidence 9876 677 57899999999999999999999999999864 67777766211 1 123555555 5678
Q ss_pred hhcCC-ccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcC-CCeeeehHHH
Q 013789 222 SSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAA 299 (436)
Q Consensus 222 ~e~~G-vd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~G-ad~VmiGRa~ 299 (436)
+++.| +|+|++.+....-.+. ..... +..+..+....+...++|||++|+|.+++.++++++.| ||.|.+||++
T Consensus 246 L~~~G~~d~i~vs~~~~~~~~~---~~~~~-~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ 321 (363)
T COG1902 246 LEEAGLVDYIHVSEGGYERGGT---ITVSG-PGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPF 321 (363)
T ss_pred HHhcCCccEEEeecccccCCCC---ccccc-cchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhh
Confidence 88999 7999997543211110 00000 11122222223333479999999999999999999976 9999999999
Q ss_pred HhCCcchhh
Q 013789 300 YQNPWYTLG 308 (436)
Q Consensus 300 l~~P~lf~~ 308 (436)
+.||+|..+
T Consensus 322 ladP~~~~k 330 (363)
T COG1902 322 LADPDLVLK 330 (363)
T ss_pred hcCccHHHH
Confidence 999998654
No 28
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-28 Score=243.66 Aligned_cols=270 Identities=21% Similarity=0.362 Sum_probs=212.1
Q ss_pred cCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhh----------------hhccCCCCC
Q 013789 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDR----------------FLAFSPEQH 125 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~----------------~~~~~~~~~ 125 (436)
++.+...|.+|+|||..+.+.++|.++-++| ++++|||-+....|+...+.... |..+..++.
T Consensus 4 ~~~l~y~nk~iLApMvr~G~lpmrLLal~~G-adlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~ 82 (477)
T KOG2334|consen 4 ISSLFYRNKLILAPMVRAGELPMRLLALQYG-ADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENS 82 (477)
T ss_pred hhhhhhcCcEeeehHHHhccchHHHHHHHhc-cceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcC
Confidence 4566678999999999999999999999996 89999999998888765432111 111233456
Q ss_pred cEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCC
Q 013789 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 205 (436)
Q Consensus 126 pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~ 205 (436)
.+++|++.++++-..++|+++.. ...+||+|||||-..-. ++++|++|+.+|+.+..|+.++++...+|+++|||+ .
T Consensus 83 rlilQ~gT~sa~lA~e~A~lv~n-DvsgidiN~gCpK~fSi-~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~-L 159 (477)
T KOG2334|consen 83 RLILQIGTASAELALEAAKLVDN-DVSGIDINMGCPKEFSI-HGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRL-L 159 (477)
T ss_pred eEEEEecCCcHHHHHHHHHHhhc-ccccccccCCCCCcccc-ccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEe-c
Confidence 79999999999998899998876 47899999999986544 566899999999999999999999999999999996 3
Q ss_pred CCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCC---HHHH
Q 013789 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT---VDEV 282 (436)
Q Consensus 206 ~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s---~~da 282 (436)
++.+. ..+.+.++ ...|+.+|+||+||.. .+...+..-+++.+++.....||||+||++++ ..|+
T Consensus 160 ~s~ed---tL~lv~ri-~~tgi~ai~vh~rt~d--------~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di 227 (477)
T KOG2334|consen 160 DSKED---TLKLVKRI-CATGIAAITVHCRTRD--------ERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDI 227 (477)
T ss_pred CCccc---HHHHHHHH-HhcCCceEEEEeeccc--------cCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhH
Confidence 33332 23333333 5699999999999862 12223444677777777665699999999999 6777
Q ss_pred HHHHH-cCCCeeeehHHHHhCCcchhhhhhhhhcCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013789 283 NAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLL 357 (436)
Q Consensus 283 ~~~l~-~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~ 357 (436)
....+ +|+++|||+|++..||.+|.. .| ..++.+.++.|+++....-++|++.++.+..+.....
T Consensus 228 ~~~~~~~~~~~vmiAR~A~~n~SiF~~------eG----~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~ 293 (477)
T KOG2334|consen 228 EDFQEKTGADSVMIARAAESNPSIFRE------EG----CLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQ 293 (477)
T ss_pred HHHHHHhccchhhhhHhhhcCCceeee------cC----CchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhh
Confidence 77776 899999999999999999842 23 4567888999999998888999987776666655443
No 29
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.96 E-value=1.1e-28 Score=273.16 Aligned_cols=246 Identities=17% Similarity=0.177 Sum_probs=185.8
Q ss_pred CccccCCeecCCcEEEcCCCC-------CChHHHHHHH-HHcCCCcEEEeccccchhhhh---------cccchhhhh--
Q 013789 58 KAEMVARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIY---------QQGNLDRFL-- 118 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag-------vtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~---------~~~~~~~~~-- 118 (436)
+|++|++++|||||+++||.. +|+.++.++. +..||+|+++||.+.+..-.. ....+..+.
T Consensus 401 ~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~ 480 (765)
T PRK08255 401 TPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRI 480 (765)
T ss_pred CccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHH
Confidence 899999999999999999953 4788888886 566899999999877653321 111222222
Q ss_pred -c-cCCC-CCcEEEEEcCC-------------------------------------C------------HHHHHHHHHHH
Q 013789 119 -A-FSPE-QHPIVLQIGGS-------------------------------------N------------LDNLAKATELA 146 (436)
Q Consensus 119 -~-~~~~-~~pi~vQL~g~-------------------------------------~------------p~~~~~aA~~~ 146 (436)
+ +|.. +..+++||++. . .++|++||+++
T Consensus 481 ~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a 560 (765)
T PRK08255 481 VDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRA 560 (765)
T ss_pred HHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 2 5666 57899998420 0 16799999999
Q ss_pred HHCCCCEEEecCC---------CCCCccccCCCccccccCChHHHHHHHHHHhhcc--CCcEEEEecc-CCCCC-CcHHH
Q 013789 147 NAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-GVDDH-DSYNQ 213 (436)
Q Consensus 147 ~~~G~d~IdLN~g---------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~--~iPvsvKiR~-G~~~~-~~~~~ 213 (436)
.++|||+||||+| ||. .+.|+|+||++++++.+++.||+++|++.+ ++||++|++. +|.+. .+.++
T Consensus 561 ~~aGfDgveih~ahGyLl~qFlsp~-~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~ 639 (765)
T PRK08255 561 AEAGFDWLELHCAHGYLLSSFISPL-TNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDD 639 (765)
T ss_pred HHcCCCEEEEecccchHHHHhcCCC-CCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHH
Confidence 9999999999999 999 468899999999999999999999999987 4899999997 34332 23555
Q ss_pred HHHHHHHHhhcCCccEEEEcc-CcccccCCCCCCCCCCCCcc-HHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCC
Q 013789 214 LCDFIYKVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGA 290 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhg-rt~~~~G~~~~~~~~i~~~~-~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Ga 290 (436)
..+ +++.+++.|+|+|+||+ ++.... . ...++.. ..+..++++. .++|||++|+|.++++++++++ .+|
T Consensus 640 ~~~-~~~~l~~~g~d~i~vs~g~~~~~~--~----~~~~~~~~~~~~~~ik~~-~~~pv~~~G~i~~~~~a~~~l~~g~~ 711 (765)
T PRK08255 640 AVE-IARAFKAAGADLIDVSSGQVSKDE--K----PVYGRMYQTPFADRIRNE-AGIATIAVGAISEADHVNSIIAAGRA 711 (765)
T ss_pred HHH-HHHHHHhcCCcEEEeCCCCCCcCC--C----CCcCccccHHHHHHHHHH-cCCEEEEeCCCCCHHHHHHHHHcCCc
Confidence 555 46677889999999994 432100 0 0111111 2333445554 4899999999999999999998 669
Q ss_pred CeeeehHHHHhCCcchhhhhhh
Q 013789 291 HHVMVGRAAYQNPWYTLGHVDT 312 (436)
Q Consensus 291 d~VmiGRa~l~~P~lf~~~~~~ 312 (436)
|+||+||+++.||++.++..++
T Consensus 712 D~v~~gR~~l~dP~~~~~~~~~ 733 (765)
T PRK08255 712 DLCALARPHLADPAWTLHEAAE 733 (765)
T ss_pred ceeeEcHHHHhCccHHHHHHHH
Confidence 9999999999999766666554
No 30
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.96 E-value=4.4e-28 Score=241.06 Aligned_cols=229 Identities=21% Similarity=0.302 Sum_probs=174.0
Q ss_pred ccCCeecCCcEEEcC-CCCCChHHHHHHHHHcCCCcEEEeccccchhhhhc-------------------ccchhhhhc-
Q 013789 61 MVARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFLA- 119 (436)
Q Consensus 61 ~i~~l~l~n~iilAP-Magvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~-------------------~~~~~~~~~- 119 (436)
++.++.++|||++|. +.+.+. .+...+... |+|.+.+.-++.+.-..+ +...+.+++
T Consensus 5 ~~~G~~~~nPv~~aag~~~~~~-~~~~~~~~~-g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~ 82 (301)
T PRK07259 5 ELPGLKLKNPVMPASGTFGFGG-EYARFYDLN-GLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEE 82 (301)
T ss_pred EECCEECCCCcEECCcCCCCCH-HHHHHhhhc-CCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHH
Confidence 378999999999997 566665 444444455 489999888876532100 011122221
Q ss_pred ----cCCCCCcEEEEEcCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC
Q 013789 120 ----FSPEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (436)
Q Consensus 120 ----~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G-~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~ 194 (436)
....+.|+++||+|+++++|+++|+.++++| +|+||||++||+.. ++ |..+.++++++.+++++|++.++
T Consensus 83 ~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~----~g-g~~~~~~~~~~~eiv~~vr~~~~ 157 (301)
T PRK07259 83 ELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK----HG-GMAFGTDPELAYEVVKAVKEVVK 157 (301)
T ss_pred HHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC----CC-ccccccCHHHHHHHHHHHHHhcC
Confidence 1234689999999999999999999999999 99999999999852 22 67788999999999999999999
Q ss_pred CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCccc---------------ccCCCCCCCCCCCCccHHHHH
Q 013789 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL---------------LNGISPAENRTIPPLKYEYYY 259 (436)
Q Consensus 195 iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~---------------~~G~~~~~~~~i~~~~~~~v~ 259 (436)
+||.+|++...+ ++.+ +++.++++|+|+|++++++.. .+|.++ ..+.+..+++++
T Consensus 158 ~pv~vKl~~~~~------~~~~-~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg---~~~~p~~l~~v~ 227 (301)
T PRK07259 158 VPVIVKLTPNVT------DIVE-IAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSG---PAIKPIALRMVY 227 (301)
T ss_pred CCEEEEcCCCch------hHHH-HHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCC---cCcccccHHHHH
Confidence 999999997442 2222 355677899999998654321 112222 234455688888
Q ss_pred HHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcchh
Q 013789 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 307 (436)
Q Consensus 260 ~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 307 (436)
++.+.+ ++|||++|||.|++|+.++++.|||+||+||+++.+|++|.
T Consensus 228 ~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~ 274 (301)
T PRK07259 228 QVYQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFP 274 (301)
T ss_pred HHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHH
Confidence 888765 89999999999999999999999999999999999999863
No 31
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.96 E-value=1.2e-27 Score=236.33 Aligned_cols=232 Identities=19% Similarity=0.212 Sum_probs=177.5
Q ss_pred cCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcc----------------------------cc
Q 013789 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ----------------------------GN 113 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~----------------------------~~ 113 (436)
+.++.++|||++|-...-++..+.+.+...| +|.+.+.-++.++...+. ..
T Consensus 3 ~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g 81 (289)
T cd02810 3 FLGLKLKNPFGVAAGPLLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLG 81 (289)
T ss_pred ECCEECCCCCEeCCCCCCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcC
Confidence 5789999999999887766767666666664 899988877765321100 00
Q ss_pred hhhhh----cc-CC-CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHH
Q 013789 114 LDRFL----AF-SP-EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187 (436)
Q Consensus 114 ~~~~~----~~-~~-~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~ 187 (436)
.+.++ .. .. .+.|+++||+|++++++.++++.++++|+|+||||++||.... |..++++++.+.++++
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~------~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG------GRQLGQDPEAVANLLK 155 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccCHHHHHHHHH
Confidence 11111 11 22 4789999999999999999999999999999999999998532 4457899999999999
Q ss_pred HHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccc---------------cCCCCCCCCCCCC
Q 013789 188 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---------------NGISPAENRTIPP 252 (436)
Q Consensus 188 av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~---------------~G~~~~~~~~i~~ 252 (436)
+|++.+++||++|++.+++. +++.+ +++.++++|+|+|++|+++... .|.++ ..+.+
T Consensus 156 ~vr~~~~~pv~vKl~~~~~~----~~~~~-~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg---~~~~~ 227 (289)
T cd02810 156 AVKAAVDIPLLVKLSPYFDL----EDIVE-LAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG---APIRP 227 (289)
T ss_pred HHHHccCCCEEEEeCCCCCH----HHHHH-HHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCc---HHHHH
Confidence 99999899999999987642 23333 3456678999999999875311 01111 12233
Q ss_pred ccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC-Ccchhh
Q 013789 253 LKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLG 308 (436)
Q Consensus 253 ~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~~ 308 (436)
..+++++++.+.++ ++|||++|||.+++|+.++++.|||+||+||+++.| ||+|.+
T Consensus 228 ~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~ 285 (289)
T cd02810 228 LALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRK 285 (289)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHH
Confidence 45777888877764 799999999999999999999999999999999999 999743
No 32
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.95 E-value=3e-27 Score=245.29 Aligned_cols=230 Identities=18% Similarity=0.189 Sum_probs=172.1
Q ss_pred ccCCeecCCcEEEcCCCC-CChHHHHHHHHHcCCCcEEEeccccchhhhhcc-c------------------------ch
Q 013789 61 MVARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-G------------------------NL 114 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMag-vtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~-~------------------------~~ 114 (436)
++.++.|+|||++|-=.- .+...++.+.. . |+|.+.+.-++ .+..... + ..
T Consensus 7 ~~~Gl~l~nPv~~aag~~~~~~~~~~~~~~-~-g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~~~ 83 (420)
T PRK08318 7 TFCGIKSPNPFWLASAPPTNKYYNVARAFE-A-GWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDRPL 83 (420)
T ss_pred EECCEecCCCcEeCCcCCCCCHHHHHHHHH-h-CCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCcccccccCH
Confidence 378999999999994321 23445566554 4 58888877666 2221111 0 00
Q ss_pred hhhh----cc-C-CCCCcEEEEEcCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHH
Q 013789 115 DRFL----AF-S-PEQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187 (436)
Q Consensus 115 ~~~~----~~-~-~~~~pi~vQL~g~-~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~ 187 (436)
+.++ .+ . ..+.|+++||+|+ ++++++++|+.++++|+|+||||++||+ ++..++ +|+.++++++.+.++++
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~~~~-~g~~~~~~~~~~~~i~~ 161 (420)
T PRK08318 84 EVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERG-MGSAVGQVPELVEMYTR 161 (420)
T ss_pred HHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-CccccC-CcccccCCHHHHHHHHH
Confidence 1111 11 1 1257899999999 9999999999999999999999999999 455445 59999999999999999
Q ss_pred HHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE---------------------ccCcccccCCCCCC
Q 013789 188 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---------------------HSRKALLNGISPAE 246 (436)
Q Consensus 188 av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v---------------------hgrt~~~~G~~~~~ 246 (436)
+|++.+++||+||++...++ ..+ +++.++++|+|+|++ |+|+. .+|+++
T Consensus 162 ~v~~~~~~Pv~vKl~p~~~~---~~~----~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~-~gg~SG-- 231 (420)
T PRK08318 162 WVKRGSRLPVIVKLTPNITD---IRE----PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSS-HGGYCG-- 231 (420)
T ss_pred HHHhccCCcEEEEcCCCccc---HHH----HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCC-cccccc--
Confidence 99999999999999975432 333 355678899999994 33322 234443
Q ss_pred CCCCCCccHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh-CCcch
Q 013789 247 NRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYT 306 (436)
Q Consensus 247 ~~~i~~~~~~~v~~l~~~~--~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf 306 (436)
..+.|..|++++++.+.. .++|||++|||.|++|+.+++.+|||+||||||++. .|.++
T Consensus 232 -~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii 293 (420)
T PRK08318 232 -PAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIV 293 (420)
T ss_pred -hhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhH
Confidence 345666799999998865 279999999999999999999999999999999998 67764
No 33
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.95 E-value=2.3e-26 Score=227.87 Aligned_cols=229 Identities=19% Similarity=0.158 Sum_probs=168.1
Q ss_pred cCCeecCCcEEEcCCC-CCChHHHHHHHHHcCCCcEEEeccccchhhhh-------------------cccchhhhhc--
Q 013789 62 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIY-------------------QQGNLDRFLA-- 119 (436)
Q Consensus 62 i~~l~l~n~iilAPMa-gvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~-------------------~~~~~~~~~~-- 119 (436)
+.+++++|||++|-=. +-+...++.+.. . |+|.+.+.-++.++... .+...+.+++
T Consensus 3 ~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~-~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i 80 (294)
T cd04741 3 PPGLTISPPLMNAAGPWCTTLEDLLELAA-S-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYI 80 (294)
T ss_pred cCCeeCCCCCEECCCCCCCCHHHHHHHHH-c-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHH
Confidence 6789999999999765 445556666654 4 58999888777653311 1111222221
Q ss_pred --c----CCCCCcEEEEEcCCCHHHHHHHHHHHHHC---CCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHh
Q 013789 120 --F----SPEQHPIVLQIGGSNLDNLAKATELANAY---NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190 (436)
Q Consensus 120 --~----~~~~~pi~vQL~g~~p~~~~~aA~~~~~~---G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~ 190 (436)
. +..+.|+++||+|+ ++++.++++.+++. |+|+||||++||+.. + +..+..+++.+.+++++|+
T Consensus 81 ~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~----~--~~~~~~~~~~~~~i~~~v~ 153 (294)
T cd04741 81 RTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP----G--KPPPAYDFDATLEYLTAVK 153 (294)
T ss_pred HHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC----C--cccccCCHHHHHHHHHHHH
Confidence 1 12578999999999 99999999988875 699999999999942 1 2346689999999999999
Q ss_pred hccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcC--CccEEEE----------cc-Ccc-------cccCCCCCCCCCC
Q 013789 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFII----------HS-RKA-------LLNGISPAENRTI 250 (436)
Q Consensus 191 ~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~--Gvd~I~v----------hg-rt~-------~~~G~~~~~~~~i 250 (436)
+.+++||+||++++++. . ++.+ +++.++++ |+|+|++ |. |+. .++|.++ ..+
T Consensus 154 ~~~~iPv~vKl~p~~~~-~---~~~~-~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG---~~i 225 (294)
T cd04741 154 AAYSIPVGVKTPPYTDP-A---QFDT-LAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAG---AYL 225 (294)
T ss_pred HhcCCCEEEEeCCCCCH-H---HHHH-HHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCc---hhh
Confidence 99999999999998743 2 2333 24445567 9999995 43 221 1123332 334
Q ss_pred CCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh-CCcchh
Q 013789 251 PPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTL 307 (436)
Q Consensus 251 ~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~ 307 (436)
.+..+.+++++.+... ++|||++|||.|++|+.+++.+|||+||+|||++. +||+|.
T Consensus 226 ~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~ 284 (294)
T cd04741 226 HPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFA 284 (294)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHH
Confidence 4555677788877664 59999999999999999999999999999999995 999874
No 34
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.95 E-value=1.8e-27 Score=240.59 Aligned_cols=248 Identities=16% Similarity=0.164 Sum_probs=167.3
Q ss_pred CccccCCeecCCcEEEcCCCC--------CCh-HHHHHHH-HHcCCCcEEEeccccchhhhhc---------ccchhhhh
Q 013789 58 KAEMVARQYLPPWFSVAPMMD--------WTD-NHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDRFL 118 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag--------vtd-~~fr~~~-~~~Gg~gl~~temv~~~~l~~~---------~~~~~~~~ 118 (436)
+|++||+++|||||++|||.. +++ ...+++. +..||+|+++||.+.++.-... ...+..+.
T Consensus 4 ~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k 83 (341)
T PF00724_consen 4 SPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLK 83 (341)
T ss_dssp S-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHH
T ss_pred CCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHH
Confidence 799999999999999999963 445 6667675 6778999999999887754321 11222222
Q ss_pred c----cCCCCCcEEEEEcCCC-------------------------------------------HHHHHHHHHHHHHCCC
Q 013789 119 A----FSPEQHPIVLQIGGSN-------------------------------------------LDNLAKATELANAYNY 151 (436)
Q Consensus 119 ~----~~~~~~pi~vQL~g~~-------------------------------------------p~~~~~aA~~~~~~G~ 151 (436)
+ +|..+.++++||++.. .++|++||++++++||
T Consensus 84 ~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGf 163 (341)
T PF00724_consen 84 KLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGF 163 (341)
T ss_dssp HHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 5778899999997410 1679999999999999
Q ss_pred CEEEecCC---------CCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEeccCCCCCC--cHHHHHHHH
Q 013789 152 DEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHD--SYNQLCDFI 218 (436)
Q Consensus 152 d~IdLN~g---------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR~G~~~~~--~~~~~~~~l 218 (436)
|+||||++ +|. .|.|+|+||+++.+|.+++.||+++||+.++ .||.+|+...-.... +.++..+ +
T Consensus 164 DGVEIH~ahGyLl~qFLSp~-~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~-~ 241 (341)
T PF00724_consen 164 DGVEIHAAHGYLLSQFLSPL-TNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIE-I 241 (341)
T ss_dssp SEEEEEESTTSHHHHHHSTT-T---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHH-H
T ss_pred CeEeecccchhhhhheeeec-cCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHH-H
Confidence 99999987 566 5789999999999999999999999999874 667777766311111 2344433 3
Q ss_pred HHHhhcCCccEEEEccCcccccCC-CCCCCCCCCC-ccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeee
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGI-SPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 295 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~-~~~~~~~i~~-~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~Vmi 295 (436)
++++++.|+|.+.+.......... .........+ ........+.+ ..++|||++|+|.+++.++++++ ..||.|.+
T Consensus 242 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~-~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 242 AKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKK-AVKIPVIGVGGIRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp HHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHH-HHSSEEEEESSTTHHHHHHHHHHTTSTSEEEE
T ss_pred HHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhh-hcCceEEEEeeecchhhhHHHHhcCCceEeec
Confidence 566778899988764222100000 0000001111 11233334444 34899999999999999999998 45999999
Q ss_pred hHHHHhCCcchhh
Q 013789 296 GRAAYQNPWYTLG 308 (436)
Q Consensus 296 GRa~l~~P~lf~~ 308 (436)
||+++.||+|..+
T Consensus 321 gR~~ladPd~~~k 333 (341)
T PF00724_consen 321 GRPLLADPDLPNK 333 (341)
T ss_dssp SHHHHH-TTHHHH
T ss_pred cHHHHhCchHHHH
Confidence 9999999998754
No 35
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.95 E-value=3.2e-26 Score=232.76 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=173.9
Q ss_pred CccccCCeecCCcEEEcCCCC---------CChHHHHHHHHHcCCCcEEEeccccchhhhhc---------ccchhhhhc
Q 013789 58 KAEMVARQYLPPWFSVAPMMD---------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------QGNLDRFLA 119 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag---------vtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~---------~~~~~~~~~ 119 (436)
+|++|++++|||||++|||.. .|+..++++.+.+ |+|+++||.+.+...... .+.+..+.+
T Consensus 5 ~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA-g~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~ 83 (362)
T PRK10605 5 SPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA-SAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKK 83 (362)
T ss_pred CCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHh-CCCEEEECceeeCcccccCCCCCcccCHHHHHHHHH
Confidence 799999999999999999963 2667788887766 599999998887533211 111222221
Q ss_pred ----cCCCCCcEEEEEcCC------------------------------------------C------------HHHHHH
Q 013789 120 ----FSPEQHPIVLQIGGS------------------------------------------N------------LDNLAK 141 (436)
Q Consensus 120 ----~~~~~~pi~vQL~g~------------------------------------------~------------p~~~~~ 141 (436)
+|..+.++++||++. . .++|++
T Consensus 84 lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 163 (362)
T PRK10605 84 ITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQ 163 (362)
T ss_pred HHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHHH
Confidence 577788899998531 0 167999
Q ss_pred HHHHHHHCCCCEEEecCC---------CCCCccccCCCccccccCChHHHHHHHHHHhhccCC-cEEEEeccC-----CC
Q 013789 142 ATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-----VD 206 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~g---------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i-PvsvKiR~G-----~~ 206 (436)
||++++++|||+||||++ +|. .|.|+|+||+++.+|.+++.||+++|+++++- .|.+|+..- .+
T Consensus 164 AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~-~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~ 242 (362)
T PRK10605 164 AIANAREAGFDLVELHSAHGYLLHQFLSPS-SNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVD 242 (362)
T ss_pred HHHHHHHcCCCEEEEcccccchHHHhcCCc-CCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCC
Confidence 999999999999999977 566 57899999999999999999999999998853 366666431 11
Q ss_pred CCCcHHH-HHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q 013789 207 DHDSYNQ-LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 285 (436)
Q Consensus 207 ~~~~~~~-~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~ 285 (436)
...+.++ ..+ +++.+++.|+|+|.|..... .+. .+....+..++++. .++||+++|++ |++.++++
T Consensus 243 ~G~~~~e~~~~-~~~~L~~~giD~i~vs~~~~--~~~--------~~~~~~~~~~ik~~-~~~pv~~~G~~-~~~~ae~~ 309 (362)
T PRK10605 243 NGPNEEADALY-LIEQLGKRGIAYLHMSEPDW--AGG--------EPYSDAFREKVRAR-FHGVIIGAGAY-TAEKAETL 309 (362)
T ss_pred CCCCHHHHHHH-HHHHHHHcCCCEEEeccccc--cCC--------ccccHHHHHHHHHH-CCCCEEEeCCC-CHHHHHHH
Confidence 1124455 344 46677889999999975321 010 01112333444444 48999999997 89999999
Q ss_pred HHcC-CCeeeehHHHHhCCcchhhh
Q 013789 286 LRKG-AHHVMVGRAAYQNPWYTLGH 309 (436)
Q Consensus 286 l~~G-ad~VmiGRa~l~~P~lf~~~ 309 (436)
++.| ||.|++||+++.||+|+.+.
T Consensus 310 i~~G~~D~V~~gR~~iadPd~~~k~ 334 (362)
T PRK10605 310 IGKGLIDAVAFGRDYIANPDLVARL 334 (362)
T ss_pred HHcCCCCEEEECHHhhhCccHHHHH
Confidence 9966 99999999999999986443
No 36
>PLN02411 12-oxophytodienoate reductase
Probab=99.95 E-value=4e-26 Score=234.17 Aligned_cols=246 Identities=17% Similarity=0.149 Sum_probs=169.5
Q ss_pred CccccCCeecCCcEEEcCCCC-------CChHHHHHHH-HHcCCCcEEEeccccchhhhh---------cccchhhhh--
Q 013789 58 KAEMVARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIY---------QQGNLDRFL-- 118 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMag-------vtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~---------~~~~~~~~~-- 118 (436)
+|++|++++|||||++|||.. +|+....++. +..|| |+++||.+.+..-.. ..+.+..+.
T Consensus 14 ~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l 92 (391)
T PLN02411 14 SPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKV 92 (391)
T ss_pred CCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcccCcCCCCCccCCHHHHHHHHHH
Confidence 899999999999999999953 4788888886 45577 999999887763321 111222222
Q ss_pred --ccCCCCCcEEEEEcC----------------------------------------CC------------HHHHHHHHH
Q 013789 119 --AFSPEQHPIVLQIGG----------------------------------------SN------------LDNLAKATE 144 (436)
Q Consensus 119 --~~~~~~~pi~vQL~g----------------------------------------~~------------p~~~~~aA~ 144 (436)
.+|..+.++++||++ .. .++|++||+
T Consensus 93 ~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~ 172 (391)
T PLN02411 93 VDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQAAL 172 (391)
T ss_pred HHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 157778888888842 01 167999999
Q ss_pred HHHHCCCCEEEecCC---------CCCCccccCCCccccccCChHHHHHHHHHHhhccCC-cEEEEeccCC-----CCCC
Q 013789 145 LANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DDHD 209 (436)
Q Consensus 145 ~~~~~G~d~IdLN~g---------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i-PvsvKiR~G~-----~~~~ 209 (436)
+++++|||+||||++ +|. .|.|+|+||+++.+|.+++.||+++||++++- .|.+|+...- .+.+
T Consensus 173 rA~~AGFDGVEIH~AhGYLl~QFLSp~-tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~ 251 (391)
T PLN02411 173 NAIRAGFDGIEIHGAHGYLIDQFLKDG-INDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSD 251 (391)
T ss_pred HHHHcCCCEEEEccccchHHHHhCCCc-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCc
Confidence 999999999999987 677 57899999999999999999999999999863 3666666421 1111
Q ss_pred cH---HHHHHHHHHHhhcC--CccEEEEccCcccccCCCCCCCCCCCCccHH-HHHHHHhcCCCcEEEEeCCCCCHHHHH
Q 013789 210 SY---NQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVN 283 (436)
Q Consensus 210 ~~---~~~~~~la~~~e~~--Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~-~v~~l~~~~~~iPVIanGgI~s~~da~ 283 (436)
.. .++++.+..+.+.. |+|+|.|........+..... ..-....+. +..++++. .++|||++|+| +.+.++
T Consensus 252 ~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~-~~~~~~~~~~~a~~ik~~-v~~pvi~~G~i-~~~~a~ 328 (391)
T PLN02411 252 PLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESG-RHGSEEEEAQLMRTLRRA-YQGTFMCSGGF-TRELGM 328 (391)
T ss_pred chhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccc-ccCCccchhHHHHHHHHH-cCCCEEEECCC-CHHHHH
Confidence 12 23333333322223 599999975432100100000 000011122 23344444 48999999999 679999
Q ss_pred HHHHcC-CCeeeehHHHHhCCcchhh
Q 013789 284 AALRKG-AHHVMVGRAAYQNPWYTLG 308 (436)
Q Consensus 284 ~~l~~G-ad~VmiGRa~l~~P~lf~~ 308 (436)
++++.| ||.|.+||+++.||+|..+
T Consensus 329 ~~l~~g~aDlV~~gR~~iadPdl~~k 354 (391)
T PLN02411 329 QAVQQGDADLVSYGRLFISNPDLVLR 354 (391)
T ss_pred HHHHcCCCCEEEECHHHHhCccHHHH
Confidence 999966 9999999999999998654
No 37
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.93 E-value=1.3e-24 Score=218.40 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=167.9
Q ss_pred cccCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchh-hhh--------------------cccchhhhh
Q 013789 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAET-IIY--------------------QQGNLDRFL 118 (436)
Q Consensus 60 ~~i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~-l~~--------------------~~~~~~~~~ 118 (436)
.++.++.++|||++|-=..-+...++.+. .. |+|.+.+.-++.+. ..+ .+...+.++
T Consensus 41 ~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~ 118 (327)
T cd04738 41 VEVFGLTFPNPVGLAAGFDKNAEAIDALL-AL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVA 118 (327)
T ss_pred eEECCEECCCCCEeCcCCCCCHHHHHHHH-HC-CCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHH
Confidence 44789999999998854333334455554 45 58999888877641 100 011122222
Q ss_pred ----ccCCCCCcEEEEEcCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHH
Q 013789 119 ----AFSPEQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187 (436)
Q Consensus 119 ----~~~~~~~pi~vQL~g~~-------p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~ 187 (436)
+....+.|+++||+|++ .++|++.++.+.+. +|+||||++||+.. |...+.+++.+.++++
T Consensus 119 ~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~-ad~ielN~scP~~~-------g~~~~~~~~~~~~iv~ 190 (327)
T cd04738 119 KRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTP-------GLRDLQGKEALRELLT 190 (327)
T ss_pred HHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC-------ccccccCHHHHHHHHH
Confidence 12224689999999987 68888888888764 89999999999853 2334689999999999
Q ss_pred HHhhccC-----CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccc------------cCCCCCCCCCC
Q 013789 188 VIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTI 250 (436)
Q Consensus 188 av~~~~~-----iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~------------~G~~~~~~~~i 250 (436)
+|++.++ +||.||++.+++. +++.+ +++.++++|+|+|++|+|+... +|.++ ..+
T Consensus 191 av~~~~~~~~~~~Pv~vKl~~~~~~----~~~~~-ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG---~~~ 262 (327)
T cd04738 191 AVKEERNKLGKKVPLLVKIAPDLSD----EELED-IADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG---APL 262 (327)
T ss_pred HHHHHHhhcccCCCeEEEeCCCCCH----HHHHH-HHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC---hhh
Confidence 9999875 9999999987642 23333 3566788999999999986421 12222 223
Q ss_pred CCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC-Ccchh
Q 013789 251 PPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 307 (436)
Q Consensus 251 ~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 307 (436)
.+..+++++++.+... ++|||++|||.|++|+.+++.+|||+|||||+++.+ ||+|.
T Consensus 263 ~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~ 321 (327)
T cd04738 263 KERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVK 321 (327)
T ss_pred hHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHH
Confidence 3445788888877653 699999999999999999999999999999999885 99864
No 38
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.93 E-value=4.3e-24 Score=214.48 Aligned_cols=226 Identities=15% Similarity=0.141 Sum_probs=164.9
Q ss_pred ccCCeecCCcEEEc--CCCCCChHHHHHHHHHcCCCcEEEeccccchhhhh-c--------------------------c
Q 013789 61 MVARQYLPPWFSVA--PMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY-Q--------------------------Q 111 (436)
Q Consensus 61 ~i~~l~l~n~iilA--PMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~-~--------------------------~ 111 (436)
++.++.++|||++| |. +-+...++. +... |+|.+.|.-++.+.+.+ + +
T Consensus 5 ~~~Gl~l~nPv~~ASg~~-~~~~e~~~~-~~~~-G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n 81 (325)
T cd04739 5 TYLGLSLKNPLVASASPL-SRNLDNIRR-LEDA-GAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYN 81 (325)
T ss_pred EECCEecCCCCEeCCcCC-CCCHHHHHH-HHHC-CCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccC
Confidence 37889999999996 44 344445555 3445 48888888877653111 0 1
Q ss_pred cchhhhh----cc-CCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHH
Q 013789 112 GNLDRFL----AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (436)
Q Consensus 112 ~~~~~~~----~~-~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv 186 (436)
...+.++ +. ...+.|+++||+|++++++.++++.++++|+|+||||++||... .+.+|+.+ ++.+.+++
T Consensus 82 ~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~---~~~~g~~~---~~~~~eiv 155 (325)
T cd04739 82 LGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD---PDISGAEV---EQRYLDIL 155 (325)
T ss_pred cCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC---CCcccchH---HHHHHHHH
Confidence 1111111 11 12268999999999999999999999999999999999996422 24456544 57899999
Q ss_pred HHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccc------------cCCCCCCCCCCCCcc
Q 013789 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPPLK 254 (436)
Q Consensus 187 ~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~------------~G~~~~~~~~i~~~~ 254 (436)
+++++.+++||.||++..++ +..++ ++.++++|+|+|++|+|.... .|.++ ..+.+..
T Consensus 156 ~~v~~~~~iPv~vKl~p~~~---~~~~~----a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG---~~~~~~a 225 (325)
T cd04739 156 RAVKSAVTIPVAVKLSPFFS---ALAHM----AKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSS---PAEIRLP 225 (325)
T ss_pred HHHHhccCCCEEEEcCCCcc---CHHHH----HHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCC---ccchhHH
Confidence 99999999999999997543 23333 445678999999999986210 11221 1233445
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC-Ccch
Q 013789 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 306 (436)
Q Consensus 255 ~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 306 (436)
+.+++++.+.. ++|||++|||.|++|+.+++.+|||+||+||+++.+ |.++
T Consensus 226 l~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~ 277 (325)
T cd04739 226 LRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYI 277 (325)
T ss_pred HHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHH
Confidence 67788887765 899999999999999999999999999999999985 8865
No 39
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.93 E-value=2.3e-24 Score=217.99 Aligned_cols=230 Identities=16% Similarity=0.165 Sum_probs=167.5
Q ss_pred ccccCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchh-hhhc--------------------ccchhhh
Q 013789 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQ--------------------QGNLDRF 117 (436)
Q Consensus 59 p~~i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~-l~~~--------------------~~~~~~~ 117 (436)
+.++.+++++|||++|-=..-+...++. +... |+|.+.+.-++.+. ..+. +...+.+
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~~~~~~~~~~-~~~~-G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~ 127 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGFDKNGEAIDA-LGAL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAL 127 (344)
T ss_pred ceEECCEECCCCCEECCCCCCChHHHHH-HHHc-CCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHH
Confidence 3458899999999987533323334454 4445 58999888887641 1110 1112222
Q ss_pred hc----cCCCCCcEEEEEcCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHH
Q 013789 118 LA----FSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (436)
Q Consensus 118 ~~----~~~~~~pi~vQL~g~-------~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv 186 (436)
++ .. .+.|++++|.|+ ..++|++.++.+.+ ++|+||+|++||+.+. ....++++.+.+++
T Consensus 128 ~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g-------~~~~~~~~~~~eiv 198 (344)
T PRK05286 128 AERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPG-------LRDLQYGEALDELL 198 (344)
T ss_pred HHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCC-------cccccCHHHHHHHH
Confidence 21 22 467999999986 56889999998876 5999999999998642 22368999999999
Q ss_pred HHHhhccC-----CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccc------------cCCCCCCCCC
Q 013789 187 SVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRT 249 (436)
Q Consensus 187 ~av~~~~~-----iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~------------~G~~~~~~~~ 249 (436)
++|++.++ +||.||++.+++. +++.+ +++.++++|+|+|++|+|+... +|.++ ..
T Consensus 199 ~aVr~~~~~~~~~~PV~vKlsp~~~~----~~~~~-ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG---~~ 270 (344)
T PRK05286 199 AALKEAQAELHGYVPLLVKIAPDLSD----EELDD-IADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG---RP 270 (344)
T ss_pred HHHHHHHhccccCCceEEEeCCCCCH----HHHHH-HHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc---HH
Confidence 99999886 9999999987543 23333 3566788999999999987321 12222 12
Q ss_pred CCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC-Ccchh
Q 013789 250 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 307 (436)
Q Consensus 250 i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 307 (436)
+.+..++++.++.+... ++|||++|||.|++|+.+++++|||+|||||+++.+ ||++.
T Consensus 271 ~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~ 330 (344)
T PRK05286 271 LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVK 330 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHH
Confidence 33446778888877653 699999999999999999999999999999999875 99863
No 40
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.92 E-value=1.6e-23 Score=211.33 Aligned_cols=227 Identities=14% Similarity=0.109 Sum_probs=162.5
Q ss_pred ccCCeecCCcEEEcCCC-CCChHHHHHHHHHcCCCcEEEeccccchhhhh----------------------------cc
Q 013789 61 MVARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIY----------------------------QQ 111 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMa-gvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~----------------------------~~ 111 (436)
++.++.++|||+.|-=. +.+...++.+ ... |+|.++|.-++.++... .+
T Consensus 6 ~~~Gl~l~nPv~~asg~~~~~~~~~~~~-~~~-g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl~n 83 (334)
T PRK07565 6 TYLGLTLRNPLVASASPLSESVDNVKRL-EDA-GAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAKFY 83 (334)
T ss_pred EECCEecCCCCEecCcCCCCCHHHHHHH-HHC-CCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhccC
Confidence 47899999999776332 2344556663 344 48888888776432210 01
Q ss_pred cchhhhhc----c-CCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHH
Q 013789 112 GNLDRFLA----F-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (436)
Q Consensus 112 ~~~~~~~~----~-~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv 186 (436)
...+.+++ . ...+.|+++||+|.+++++.++++.++++|+|+|+||++||.... +.+|. ..++.+.+++
T Consensus 84 ~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~---~~~g~---~~~~~~~eil 157 (334)
T PRK07565 84 VGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDP---DISGA---EVEQRYLDIL 157 (334)
T ss_pred cCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC---CCccc---cHHHHHHHHH
Confidence 11122221 1 223589999999999999999999999999999999999976432 33343 2346688999
Q ss_pred HHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccc------------cCCCCCCCCCCCCcc
Q 013789 187 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPPLK 254 (436)
Q Consensus 187 ~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~------------~G~~~~~~~~i~~~~ 254 (436)
++|++.+++||.+|++.++++ ..+ +++.++++|+|+|++|+|.... .|.++ ..+.+..
T Consensus 158 ~~v~~~~~iPV~vKl~p~~~~---~~~----~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg---~~~~~~a 227 (334)
T PRK07565 158 RAVKSAVSIPVAVKLSPYFSN---LAN----MAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLST---PAELRLP 227 (334)
T ss_pred HHHHhccCCcEEEEeCCCchh---HHH----HHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCC---chhhhHH
Confidence 999999999999999986532 222 3556778999999999886311 01111 1233344
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC-Ccch
Q 013789 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 306 (436)
Q Consensus 255 ~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 306 (436)
+.+++++.+.. ++|||++|||.|++|+.+++.+|||+|||||+++.+ |.++
T Consensus 228 l~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~ 279 (334)
T PRK07565 228 LRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYI 279 (334)
T ss_pred HHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHH
Confidence 67777777765 899999999999999999999999999999999986 7654
No 41
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.90 E-value=2.9e-22 Score=199.19 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=146.9
Q ss_pred ccCCeecCCcEEEcCCCCCC------hHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCC
Q 013789 61 MVARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS 134 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMagvt------d~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~ 134 (436)
++-+..+..||++|||++.+ +..++.++.++|. ..+++++... ..+.+.+. .++|+.+||++.
T Consensus 57 ~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~-~~~~~~~~~~--------~~~~i~~~--~~~~~~~ql~~~ 125 (299)
T cd02809 57 TLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGI-PFTLSTVSTT--------SLEEVAAA--APGPRWFQLYVP 125 (299)
T ss_pred EECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCC-CEEecCCCcC--------CHHHHHHh--cCCCeEEEEeec
Confidence 46678889999999998765 6789999999974 5556665531 11222222 237999999986
Q ss_pred -CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHH
Q 013789 135 -NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (436)
Q Consensus 135 -~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~ 213 (436)
+++...++++.+.+.|+|.|++|++||...+. ...++++.+++++++||.+|... +.++
T Consensus 126 ~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~--------------~~~~~i~~l~~~~~~pvivK~v~------s~~~ 185 (299)
T cd02809 126 RDREITEDLLRRAEAAGYKALVLTVDTPVLGRR--------------LTWDDLAWLRSQWKGPLILKGIL------TPED 185 (299)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--------------CCHHHHHHHHHhcCCCEEEeecC------CHHH
Confidence 89999999999999999999999999985321 23467788888889999999642 2222
Q ss_pred HHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCe
Q 013789 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHH 292 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~ 292 (436)
++.++++|+|+|++|++..... + ..+..++.+.++++... ++|||++|||.++.|+.+++.+|||+
T Consensus 186 -----a~~a~~~G~d~I~v~~~gG~~~-----~---~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~ 252 (299)
T cd02809 186 -----ALRAVDAGADGIVVSNHGGRQL-----D---GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADA 252 (299)
T ss_pred -----HHHHHHCCCCEEEEcCCCCCCC-----C---CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 3455679999999976532110 1 12334888888877653 59999999999999999999999999
Q ss_pred eeehHHHH
Q 013789 293 VMVGRAAY 300 (436)
Q Consensus 293 VmiGRa~l 300 (436)
||+||+++
T Consensus 253 V~ig~~~l 260 (299)
T cd02809 253 VLIGRPFL 260 (299)
T ss_pred EEEcHHHH
Confidence 99999544
No 42
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.89 E-value=3.6e-22 Score=203.15 Aligned_cols=235 Identities=16% Similarity=0.166 Sum_probs=169.0
Q ss_pred ccCCeecCCcEEEcCCCCCChHHH-HHHHHHcCCCcEEEeccccchh--hh-----------------------hccc--
Q 013789 61 MVARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAET--II-----------------------YQQG-- 112 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMagvtd~~f-r~~~~~~Gg~gl~~temv~~~~--l~-----------------------~~~~-- 112 (436)
++.++.|+|||++|-=.--++... +++.. . |+|-++|--++.+. .. ..+.
T Consensus 14 ~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~-~-g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~~~ 91 (385)
T PLN02495 14 TVNGLKMPNPFVIGSGPPGTNYTVMKRAFD-E-GWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIEL 91 (385)
T ss_pred EECCEEcCCCcEeCCccCCCCHHHHHHHHh-c-CCeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCccc
Confidence 378999999999994333444444 55544 4 47888877665321 00 0000
Q ss_pred ----chhhhh----ccC-C-CCCcEEEEEcC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHH
Q 013789 113 ----NLDRFL----AFS-P-EQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 181 (436)
Q Consensus 113 ----~~~~~~----~~~-~-~~~pi~vQL~g-~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~ 181 (436)
..+.++ ++. . .+.|++++|.+ .++++|.+.++.++++|+|+||||++||+....++ +|..+.++++.
T Consensus 92 ~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~--~g~~~gq~~e~ 169 (385)
T PLN02495 92 ISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK--MGAAVGQDCDL 169 (385)
T ss_pred ccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc--cchhhccCHHH
Confidence 122222 222 2 25799999976 89999999999999999999999999999765543 48889999999
Q ss_pred HHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCccc------c-----------cCCCC
Q 013789 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------L-----------NGISP 244 (436)
Q Consensus 182 l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~------~-----------~G~~~ 244 (436)
+.+++++|++.+.+||.||+...+++ ..+ +++.++++|+|+|++..+... . .+.++
T Consensus 170 ~~~i~~~Vk~~~~iPv~vKLsPn~t~---i~~----ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GG 242 (385)
T PLN02495 170 LEEVCGWINAKATVPVWAKMTPNITD---ITQ----PARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGG 242 (385)
T ss_pred HHHHHHHHHHhhcCceEEEeCCChhh---HHH----HHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCC
Confidence 99999999998899999999986543 222 355667899999998654321 0 01111
Q ss_pred CCCCCCCCccHHHHHHHHhcCC-----CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC-Ccch
Q 013789 245 AENRTIPPLKYEYYYALLRDFP-----DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 306 (436)
Q Consensus 245 ~~~~~i~~~~~~~v~~l~~~~~-----~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 306 (436)
--...+.|..+..++++.+... ++|||+.|||.+++|+.+++..||+.||++++++.+ |.++
T Consensus 243 lSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi 310 (385)
T PLN02495 243 YSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLV 310 (385)
T ss_pred ccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHH
Confidence 1112345555555666666532 599999999999999999999999999999999998 8764
No 43
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.88 E-value=2.8e-21 Score=192.88 Aligned_cols=230 Identities=16% Similarity=0.136 Sum_probs=166.8
Q ss_pred ccCCeecCCcEEEcCCCC-CChHHHHHHHHHcCCCcEEEeccccchhhh-------------------hcccchhhhh--
Q 013789 61 MVARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETII-------------------YQQGNLDRFL-- 118 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMag-vtd~~fr~~~~~~Gg~gl~~temv~~~~l~-------------------~~~~~~~~~~-- 118 (436)
++.+++++|||++|-=.. -+...++. +... |+|.+.|.-++.+.-. ..+...+.++
T Consensus 5 ~~~Gl~l~NPv~~AsG~~~~~~e~~~~-~~~~-g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~ 82 (310)
T PRK02506 5 QIAGFKFDNCLMNAAGVYCMTKEELEE-VEAS-AAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDY 82 (310)
T ss_pred EECCEECCCCCEeCCCCCCCCHHHHHH-HHHc-CCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHH
Confidence 378999999999996555 34555666 4455 4899988877765211 0111122222
Q ss_pred --ccCC--CCCcEEEEEcCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc
Q 013789 119 --AFSP--EQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193 (436)
Q Consensus 119 --~~~~--~~~pi~vQL~g~~p~~~~~aA~~~~~~G-~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~ 193 (436)
+... .+.|++++|.|.+++++.+.|+.++++| +|+||||++||+... +..+-.+++.+.+++++|++.+
T Consensus 83 i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~------~~~~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 83 VLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPG------KPQIAYDFETTEQILEEVFTYF 156 (310)
T ss_pred HHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC------ccccccCHHHHHHHHHHHHHhc
Confidence 1222 2589999999999999999999999998 899999999998421 3334478999999999999999
Q ss_pred CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccC------------ccc------ccCCCCCCCCCCCCccH
Q 013789 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------------KAL------LNGISPAENRTIPPLKY 255 (436)
Q Consensus 194 ~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgr------------t~~------~~G~~~~~~~~i~~~~~ 255 (436)
.+||.+|+++..+. .++++. +..+.+.|++.|+.-.+ +.. ++|+++ ..+.+..+
T Consensus 157 ~~Pv~vKlsp~~~~----~~~a~~-~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG---~~i~p~al 228 (310)
T PRK02506 157 TKPLGVKLPPYFDI----VHFDQA-AAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGG---DYIKPTAL 228 (310)
T ss_pred CCccEEecCCCCCH----HHHHHH-HHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCc---hhccHHHH
Confidence 99999999997632 233332 23334567777644321 111 123333 45677778
Q ss_pred HHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh-CCcch
Q 013789 256 EYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYT 306 (436)
Q Consensus 256 ~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf 306 (436)
.+++++.+... ++|||++|||.|++|+.+++.+||++||++++++. +|.+|
T Consensus 229 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~ 281 (310)
T PRK02506 229 ANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVF 281 (310)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHH
Confidence 88888877653 79999999999999999999999999999999988 68875
No 44
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.87 E-value=7.5e-21 Score=187.51 Aligned_cols=227 Identities=23% Similarity=0.290 Sum_probs=172.4
Q ss_pred cCCeecCCcEEEcCCCCC-ChHHHHHHHHHcCCCcEEEeccccchhhhh---------------------cccchhhhhc
Q 013789 62 VARQYLPPWFSVAPMMDW-TDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLDRFLA 119 (436)
Q Consensus 62 i~~l~l~n~iilAPMagv-td~~fr~~~~~~Gg~gl~~temv~~~~l~~---------------------~~~~~~~~~~ 119 (436)
+-++.++||+++|-=... +...++.+. +.| .|.+.+.-++.+.-.. ++...+++++
T Consensus 6 ~~Gl~f~NPl~lAaG~~~~~~~~~~~~~-~~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~~ 83 (310)
T COG0167 6 ILGLKFPNPLGLAAGFDGKNGEELDALA-ALG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFLE 83 (310)
T ss_pred ecceecCCCCeEcccCCccCHHHHHHHH-hcC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHHH
Confidence 789999999999876664 444455554 444 7888888877652211 1111222221
Q ss_pred ----cC----CCCCcEEEEEcCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHh
Q 013789 120 ----FS----PEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190 (436)
Q Consensus 120 ----~~----~~~~pi~vQL~g~~p~~~~~aA~~~~~~G-~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~ 190 (436)
.. +.+.+++.+.++...+.+.+.+..+++++ +|.|+||.+||+.+ + |..+-.+++.+.+++++|+
T Consensus 84 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~-----g-~~~l~~~~e~l~~l~~~vk 157 (310)
T COG0167 84 ELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP-----G-GRALGQDPELLEKLLEAVK 157 (310)
T ss_pred HHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC-----C-hhhhccCHHHHHHHHHHHH
Confidence 11 23446888888989999999999999988 89999999999953 3 7777789999999999999
Q ss_pred hccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcc----------------cccCCCCCCCCCCCCcc
Q 013789 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------------LLNGISPAENRTIPPLK 254 (436)
Q Consensus 191 ~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~----------------~~~G~~~~~~~~i~~~~ 254 (436)
+.+.+||.||+.+.+ +++.+ +++.++++|+|+|++...+. ..+|+|+ ..+.|..
T Consensus 158 ~~~~~Pv~vKl~P~~------~di~~-iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG---~~ikp~a 227 (310)
T COG0167 158 AATKVPVFVKLAPNI------TDIDE-IAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSG---PPLKPIA 227 (310)
T ss_pred hcccCceEEEeCCCH------HHHHH-HHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCc---ccchHHH
Confidence 999999999999822 23333 35667889999999864221 1235554 4677777
Q ss_pred HHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC-Ccch
Q 013789 255 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 306 (436)
Q Consensus 255 ~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 306 (436)
..+++++.++.. ++|||+.|||.|++|+.+.+..||+.||||+|++.+ |++|
T Consensus 228 l~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~ 281 (310)
T COG0167 228 LRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIV 281 (310)
T ss_pred HHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHH
Confidence 888999988752 599999999999999999999999999999999999 9986
No 45
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.87 E-value=1.8e-21 Score=197.11 Aligned_cols=184 Identities=16% Similarity=0.210 Sum_probs=146.7
Q ss_pred cccCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcC--CCHH
Q 013789 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG--SNLD 137 (436)
Q Consensus 60 ~~i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g--~~p~ 137 (436)
.+|+.+++++||++|||+|+||.+||.+|+++||.|+ ++++++.+..++. .|+.+||++ ++++
T Consensus 36 ~~i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~~~----------~~~~~QI~g~~~~~~ 100 (369)
T TIGR01304 36 WQIDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHEDP----------DPAIAKIAEAYEEGD 100 (369)
T ss_pred eEEcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCCCH----------HHHHHHHhhcCCChH
Confidence 4589999999999999999999999999999998787 7888887755443 345599999 6777
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHH
Q 013789 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 217 (436)
Q Consensus 138 ~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~ 217 (436)
. +++++++++.+++. .+|+++.+++++|++.. |++|+|++. ..+.++
T Consensus 101 ~-a~aa~~~~e~~~~~-----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~---~~~~e~--- 147 (369)
T TIGR01304 101 Q-AAATRLLQELHAAP-----------------------LKPELLGERIAEVRDSG---VITAVRVSP---QNAREI--- 147 (369)
T ss_pred H-HHHHHHHHHcCCCc-----------------------cChHHHHHHHHHHHhcc---eEEEEecCC---cCHHHH---
Confidence 7 89999999987655 36889999999999863 999999953 234344
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
++.++++|+|.|++|||+..+.+.++. ..|..+.+++++. ++|||+ |||.|.+++.+++++|||+||+||
T Consensus 148 -a~~l~eAGad~I~ihgrt~~q~~~sg~-------~~p~~l~~~i~~~-~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 148 -APIVVKAGADLLVIQGTLVSAEHVSTS-------GEPLNLKEFIGEL-DVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred -HHHHHHCCCCEEEEeccchhhhccCCC-------CCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 345678999999999998643331211 1266677777775 899998 999999999999999999999998
Q ss_pred HHHh
Q 013789 298 AAYQ 301 (436)
Q Consensus 298 a~l~ 301 (436)
+.-.
T Consensus 218 gg~~ 221 (369)
T TIGR01304 218 GGAN 221 (369)
T ss_pred CCCc
Confidence 7743
No 46
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.86 E-value=1.8e-20 Score=188.73 Aligned_cols=229 Identities=15% Similarity=0.164 Sum_probs=164.9
Q ss_pred ccCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchh-hhhc--------------------ccchhhhhc
Q 013789 61 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQ--------------------QGNLDRFLA 119 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~-l~~~--------------------~~~~~~~~~ 119 (436)
++.++.++|||++|-=.+-+...++.+. .. |+|.+.+.-++.+. .... +...+.+++
T Consensus 49 ~~~Gl~l~NPi~lAsG~~~~~~~~~~~~-~~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~ 126 (335)
T TIGR01036 49 TVLGLKFPNPLGLAAGFDKDGEAIDALG-AM-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVE 126 (335)
T ss_pred EECCEECCCCcEeCCccCCCHHHHHHHH-hc-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHH
Confidence 4789999999999744333334455554 34 58999988887642 1110 111122221
Q ss_pred ---cCCCCCcEEEEEcCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 120 ---FSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 120 ---~~~~~~pi~vQL~g~-------~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
-...+.|+++++.++ ..++|++.++.+.+. +|+||||.+||+.. |.....+++.+.+++++|
T Consensus 127 ~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~-ad~iElNlScPn~~-------~~~~~~~~~~~~~i~~~V 198 (335)
T TIGR01036 127 RLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPL-ADYLVVNVSSPNTP-------GLRDLQYKAELRDLLTAV 198 (335)
T ss_pred HHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhh-CCEEEEEccCCCCC-------CcccccCHHHHHHHHHHH
Confidence 123457999999877 478999999988774 89999999999853 233348899999999999
Q ss_pred hhccC-------CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcc------------cccCCCCCCCCCC
Q 013789 190 AANTN-------VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNGISPAENRTI 250 (436)
Q Consensus 190 ~~~~~-------iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~------------~~~G~~~~~~~~i 250 (436)
++.++ +||.+|+...++. +...+ +++.++++|+|+|++..+.. ..+|+|+ ..+
T Consensus 199 ~~~~~~~~~~~~~Pv~vKLsP~~~~-~~i~~----ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG---~~i 270 (335)
T TIGR01036 199 KQEQDGLRRVHRVPVLVKIAPDLTE-SDLED----IADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSG---KPL 270 (335)
T ss_pred HHHHHhhhhccCCceEEEeCCCCCH-HHHHH----HHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccC---HHH
Confidence 98776 9999999987653 12333 35566789999999875432 1233443 234
Q ss_pred CCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC-Ccchh
Q 013789 251 PPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 307 (436)
Q Consensus 251 ~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 307 (436)
.+..+.+++++.+... ++|||++|||.+++|+.+++..||+.||+||+++.+ |+++.
T Consensus 271 ~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~ 329 (335)
T TIGR01036 271 QDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVK 329 (335)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHH
Confidence 4555677777776653 699999999999999999999999999999999885 99853
No 47
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.82 E-value=1.5e-19 Score=179.31 Aligned_cols=228 Identities=19% Similarity=0.274 Sum_probs=155.7
Q ss_pred cCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhc---------------------ccchhhhh--
Q 013789 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLDRFL-- 118 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~---------------------~~~~~~~~-- 118 (436)
+.++.++|||++|-=..-+...++.+. ++| +|.+.+.-++.+....+ +...+.++
T Consensus 6 ~~Gl~l~nPi~~asG~~~~~~~~~~~~-~~G-~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~~~ 83 (295)
T PF01180_consen 6 FCGLTLKNPIGLASGLDKNGEEIKRLF-DAG-FGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYLER 83 (295)
T ss_dssp ETTEEESSSEEE-TTSSTSSHHHHHHH-HHS-SSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHHHH
T ss_pred ECCEEcCCCcEECCcCCCCchhhhhhh-cCC-ccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHHHH
Confidence 799999999999842222334455444 455 89998887776533211 00011111
Q ss_pred --cc---CC--CCCcEEEEEcCCC---HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHH
Q 013789 119 --AF---SP--EQHPIVLQIGGSN---LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188 (436)
Q Consensus 119 --~~---~~--~~~pi~vQL~g~~---p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~a 188 (436)
.. .. -..|+++++.|.. .+++.+.++.++ .|+|++|||.+||+.. .+..+..+++...++++.
T Consensus 84 ~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~------~~~~~~~~~~~~~~i~~~ 156 (295)
T PF01180_consen 84 LRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP------GGRPFGQDPELVAEIVRA 156 (295)
T ss_dssp HHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST------TSGGGGGHHHHHHHHHHH
T ss_pred HHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC------CccccccCHHHHHHHHHH
Confidence 11 11 2569999999999 899999999888 6899999999999864 144555788999999999
Q ss_pred HhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcc------------c----ccCCCCCCCCCCCC
Q 013789 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------L----LNGISPAENRTIPP 252 (436)
Q Consensus 189 v~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~------------~----~~G~~~~~~~~i~~ 252 (436)
+++..++||.||+....++... ... +..+.+.|+++|++..+.. . .+|.++ ..+.|
T Consensus 157 v~~~~~~Pv~vKL~p~~~~~~~----~~~-~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG---~~i~p 228 (295)
T PF01180_consen 157 VREAVDIPVFVKLSPNFTDIEP----FAI-AAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSG---PAIRP 228 (295)
T ss_dssp HHHHHSSEEEEEE-STSSCHHH----HHH-HHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEE---GGGHH
T ss_pred HHhccCCCEEEEecCCCCchHH----HHH-HHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCc---hhhhh
Confidence 9998999999999996654321 111 2223368999998543321 1 122333 34455
Q ss_pred ccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHH-HhCCcch
Q 013789 253 LKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYT 306 (436)
Q Consensus 253 ~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~-l~~P~lf 306 (436)
..+.+++++.+... ++|||++|||.|++|+.+++..||+.||+++++ +..|+++
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~ 284 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVI 284 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHH
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHH
Confidence 56788888888764 599999999999999999999999999999999 6688875
No 48
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.82 E-value=5.5e-19 Score=179.16 Aligned_cols=216 Identities=16% Similarity=0.111 Sum_probs=144.0
Q ss_pred cCCeecCCcEEEcCCCCCCh------HHHHHHHHHcCCCcEEEecc----ccchhhhhcccchhhhhccCCCCCcEEEEE
Q 013789 62 VARQYLPPWFSVAPMMDWTD------NHYRTLARLISKHAWLYTEM----LAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvtd------~~fr~~~~~~Gg~gl~~tem----v~~~~l~~~~~~~~~~~~~~~~~~pi~vQL 131 (436)
+-+..++.||++|||+|.++ ..+..+++++| ..+.+..+ ..++ +......+++ .. .+.|+++||
T Consensus 54 ~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G-~~~~~Gs~~~~~~~~~-~~~~~~~vr~---~~-p~~p~~aNl 127 (352)
T PRK05437 54 FLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELG-IAMGVGSQRAALKDPE-LADSFSVVRK---VA-PDGLLFANL 127 (352)
T ss_pred ECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcC-CCeEecccHhhccChh-hHHHHHHHHH---HC-CCceEEeec
Confidence 44668999999999999987 66777888887 33333222 2222 2111111122 11 278999999
Q ss_pred cCCCH-----HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCC
Q 013789 132 GGSNL-----DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (436)
Q Consensus 132 ~g~~p-----~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~ 206 (436)
++... +++.++. +..++|+++||++|+...+...+. .+.+.+.+.++++++.+++||.+|... ..
T Consensus 128 ~~~~~~~~~~~~~~~~~---~~~~adal~l~l~~~qe~~~p~g~------~~f~~~le~i~~i~~~~~vPVivK~~g-~g 197 (352)
T PRK05437 128 GAVQLYGYGVEEAQRAV---EMIEADALQIHLNPLQELVQPEGD------RDFRGWLDNIAEIVSALPVPVIVKEVG-FG 197 (352)
T ss_pred CccccCCCCHHHHHHHH---HhcCCCcEEEeCccchhhcCCCCc------ccHHHHHHHHHHHHHhhCCCEEEEeCC-CC
Confidence 87544 5555444 444689999999998765443222 456667899999999999999999873 21
Q ss_pred CCCcHHHHHHHHHHHhhcCCccEEEEccCccc-------ccCC-----CCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGI-----SPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 207 ~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~-------~~G~-----~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
.+. +. ++.++++|+|+|+|+|+... +.+. ....+..+++ .+.+.++.+...++|||++|
T Consensus 198 --~s~-~~----a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt--~~~l~~i~~~~~~ipvia~G 268 (352)
T PRK05437 198 --ISK-ET----AKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPT--AQSLLEARSLLPDLPIIASG 268 (352)
T ss_pred --CcH-HH----HHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCH--HHHHHHHHHhcCCCeEEEEC
Confidence 122 22 44567799999999986310 0000 0011112222 45566666653589999999
Q ss_pred CCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 275 GINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 275 gI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
||.++.|+.+++..|||+|++||++|..
T Consensus 269 GI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 269 GIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred CCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 9999999999999999999999999863
No 49
>PLN02826 dihydroorotate dehydrogenase
Probab=99.81 E-value=1.6e-18 Score=178.11 Aligned_cols=230 Identities=15% Similarity=0.145 Sum_probs=164.3
Q ss_pred ccccCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhh---------------------cccchhh-
Q 013789 59 AEMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLDR- 116 (436)
Q Consensus 59 p~~i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~---------------------~~~~~~~- 116 (436)
+..+.++.++|||.+|-=.+-+...++.+.. +| .|.+.+.-+++..-.- +++..+.
T Consensus 75 ~~~~~Gl~f~NPvglAAG~dkn~~~~~~l~~-lG-fG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~ 152 (409)
T PLN02826 75 GVEVWGRTFSNPIGLAAGFDKNAEAVEGLLG-LG-FGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAV 152 (409)
T ss_pred ceEECCEECCCCCEECcccCCCHHHHHHHHh-cC-CCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHH
Confidence 4458899999999999776655556666654 44 8999888887532110 0111111
Q ss_pred ---hhccCC-----------------------CCCcEEEEEcCC-----CHHHHHHHHHHHHHCCCCEEEecCCCCCCcc
Q 013789 117 ---FLAFSP-----------------------EQHPIVLQIGGS-----NLDNLAKATELANAYNYDEINLNCGCPSPKV 165 (436)
Q Consensus 117 ---~~~~~~-----------------------~~~pi~vQL~g~-----~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v 165 (436)
+..... ...|++++|+++ .+++|.+.++.+.++ +|.++||..||+..
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~-aDylelNiScPNtp- 230 (409)
T PLN02826 153 AKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQY-ADYLVINVSSPNTP- 230 (409)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhhh-CCEEEEECCCCCCC-
Confidence 111110 123899999888 579999999988875 89999999999953
Q ss_pred ccCCCccccccCChHHHHHHHHHHhhc---------cCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCc
Q 013789 166 AGHGCFGVSLMLDPKFVGEAMSVIAAN---------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (436)
Q Consensus 166 ~r~g~yG~~Ll~~~~~l~eiv~av~~~---------~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt 236 (436)
|-..+.+++.+.+++++|++. ..+||.||+....++ +++.+ +++.++++|+|+|++..++
T Consensus 231 ------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~----~di~~-ia~~a~~~G~dGIi~~NTt 299 (409)
T PLN02826 231 ------GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSK----EDLED-IAAVALALGIDGLIISNTT 299 (409)
T ss_pred ------CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCH----HHHHH-HHHHHHHcCCCEEEEEccc
Confidence 223347889999999988642 468999999886543 12322 3556678999999997643
Q ss_pred c-------------cccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 237 A-------------LLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 237 ~-------------~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
. ..+|+|+ ..+.+...++++++.+... ++|||+.|||.|++|+.+++..||+.||++|+++.+
T Consensus 300 ~~r~~dl~~~~~~~~~GGlSG---~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 300 ISRPDSVLGHPHADEAGGLSG---KPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred CcCccchhcccccccCCCcCC---ccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 1 1234443 3445556778888877653 699999999999999999999999999999999885
Q ss_pred -Ccch
Q 013789 303 -PWYT 306 (436)
Q Consensus 303 -P~lf 306 (436)
|+++
T Consensus 377 Gp~~i 381 (409)
T PLN02826 377 GPALI 381 (409)
T ss_pred CHHHH
Confidence 8764
No 50
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.81 E-value=8.8e-19 Score=176.10 Aligned_cols=216 Identities=15% Similarity=0.123 Sum_probs=144.1
Q ss_pred cCCeecCCcEEEcCCCCCC------hHHHHHHHHHcC---CCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEc
Q 013789 62 VARQYLPPWFSVAPMMDWT------DNHYRTLARLIS---KHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 132 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvt------d~~fr~~~~~~G---g~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~ 132 (436)
+-+..++.||++|||+|.+ +..+...+++.| +.|.....+..++.. ...+.+++ ...+.|+++|++
T Consensus 46 ~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~-~~~~~vr~----~~~~~p~~~Nl~ 120 (326)
T cd02811 46 FLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELA-ESFTVVRE----APPNGPLIANLG 120 (326)
T ss_pred ECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhh-hHHHHHHH----hCCCceEEeecC
Confidence 4577899999999999988 788888899987 444433333343321 11111222 224589999999
Q ss_pred CCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCC
Q 013789 133 GSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD 207 (436)
Q Consensus 133 g~~-----p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~ 207 (436)
+.. ++++.++ ++..++|+++||++|+.......+. .+.+.+.+.++.+++.+++||.+|....
T Consensus 121 ~~~~~~~~~~~~~~~---i~~~~adalel~l~~~q~~~~~~~~------~df~~~~~~i~~l~~~~~vPVivK~~g~--- 188 (326)
T cd02811 121 AVQLNGYGVEEARRA---VEMIEADALAIHLNPLQEAVQPEGD------RDFRGWLERIEELVKALSVPVIVKEVGF--- 188 (326)
T ss_pred ccccCCCCHHHHHHH---HHhcCCCcEEEeCcchHhhcCCCCC------cCHHHHHHHHHHHHHhcCCCEEEEecCC---
Confidence 754 4555444 4444689999999988754433222 4556677889999999999999997532
Q ss_pred CCcHHHHHHHHHHHhhcCCccEEEEccCccc-------ccCCCC-------CCCCCCCCccHHHHHHHHhcCCCcEEEEe
Q 013789 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGISP-------AENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (436)
Q Consensus 208 ~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~-------~~G~~~-------~~~~~i~~~~~~~v~~l~~~~~~iPVIan 273 (436)
..+.+ . ++.++++|+|+|+|+|+-.. +.+... ..+..+++ ...+.++.+...++|||++
T Consensus 189 g~s~~-~----a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t--~~~l~~~~~~~~~ipIias 261 (326)
T cd02811 189 GISRE-T----AKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPT--AASLLEVRSALPDLPLIAS 261 (326)
T ss_pred CCCHH-H----HHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccH--HHHHHHHHHHcCCCcEEEE
Confidence 11222 1 44567899999999985210 001000 00001111 3455555554448999999
Q ss_pred CCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 274 GGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 274 GgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
|||+++.|+.+++..|||+|++||++|.
T Consensus 262 GGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 262 GGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred CCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 9999999999999999999999999875
No 51
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.80 E-value=1.4e-18 Score=173.12 Aligned_cols=194 Identities=11% Similarity=0.027 Sum_probs=145.7
Q ss_pred CCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHH
Q 013789 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKA 142 (436)
Q Consensus 63 ~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~a 142 (436)
..++++.||++|||.++|+..|...++++||.|++.....+++.+....+++++. +++||+++++...|.. .+.
T Consensus 6 ~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~-----t~~pfgvn~~~~~~~~-~~~ 79 (307)
T TIGR03151 6 DLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKEL-----TDKPFGVNIMLLSPFV-DEL 79 (307)
T ss_pred HHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHh-----cCCCcEEeeecCCCCH-HHH
Confidence 3467889999999999999999999999999999988887777776555444443 5789999998866543 345
Q ss_pred HHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHh
Q 013789 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (436)
Q Consensus 143 A~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~ 222 (436)
.+.+.+.|++.|.++.|.|. ++++.+++. ++.|...+ .+.++ ++.+
T Consensus 80 ~~~~~~~~v~~v~~~~g~p~---------------------~~i~~lk~~-g~~v~~~v-------~s~~~-----a~~a 125 (307)
T TIGR03151 80 VDLVIEEKVPVVTTGAGNPG---------------------KYIPRLKEN-GVKVIPVV-------ASVAL-----AKRM 125 (307)
T ss_pred HHHHHhCCCCEEEEcCCCcH---------------------HHHHHHHHc-CCEEEEEc-------CCHHH-----HHHH
Confidence 56666789999887655442 344455444 66655432 22322 3345
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
+++|+|.|++||+++ +|..+. . ..+.+++++++.+ ++|||++|||.|++++.+++..|||+||+|+.++..
T Consensus 126 ~~~GaD~Ivv~g~ea--gGh~g~----~--~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 126 EKAGADAVIAEGMES--GGHIGE----L--TTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred HHcCCCEEEEECccc--CCCCCC----C--cHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcc
Confidence 679999999999976 233221 1 1388888888765 899999999999999999999999999999999987
Q ss_pred Ccc
Q 013789 303 PWY 305 (436)
Q Consensus 303 P~l 305 (436)
+.-
T Consensus 197 ~Es 199 (307)
T TIGR03151 197 KEC 199 (307)
T ss_pred ccc
Confidence 654
No 52
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.80 E-value=1.4e-18 Score=175.09 Aligned_cols=215 Identities=20% Similarity=0.170 Sum_probs=141.4
Q ss_pred cCCeecCCcEEEcCCCCCC------hHHHHHHHHHcCCCcEEEec----cccchhhhhcccchhhhhccCCCCCcEEEEE
Q 013789 62 VARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTE----MLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 131 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvt------d~~fr~~~~~~Gg~gl~~te----mv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL 131 (436)
+-+..++.||++|||+|.+ +..+...+++.| ..+.+.. +..++ ..... ... +-...+.|+++||
T Consensus 47 ~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g-~~~~~Gs~~~~~~~~~-~~~~~---~~v-r~~~~~~p~i~nl 120 (333)
T TIGR02151 47 FLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELG-IPMGVGSQRAALKDPE-TADTF---EVV-REEAPNGPLIANI 120 (333)
T ss_pred ECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcC-CCeEEcCchhhccChh-hHhHH---HHH-HHhCCCCcEEeec
Confidence 5678899999999999999 778888999987 3333221 11111 11111 111 1113688999999
Q ss_pred cCCCHHH--HHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCC
Q 013789 132 GGSNLDN--LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (436)
Q Consensus 132 ~g~~p~~--~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~ 209 (436)
++..... ..++.+.++..++|+++||+.|+...+...+. .+.+...+.++++++.+++||.||.. |.. .
T Consensus 121 ~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~------~~f~~~le~i~~i~~~~~vPVivK~~-g~g--~ 191 (333)
T TIGR02151 121 GAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGD------RNFKGWLEKIAEICSQLSVPVIVKEV-GFG--I 191 (333)
T ss_pred CchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCC------cCHHHHHHHHHHHHHhcCCCEEEEec-CCC--C
Confidence 8754311 22333344444679999999998865443222 34456778999999998999999965 432 1
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCC----------------CCCCCCCccHHHHHHHHhcCCCcEEEEe
Q 013789 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA----------------ENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (436)
Q Consensus 210 ~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~----------------~~~~i~~~~~~~v~~l~~~~~~iPVIan 273 (436)
+. + .++.++++|+|+|+|||+.. .+.. .+..++. .+.+.++.+...++|||++
T Consensus 192 ~~-~----~a~~L~~aGvd~I~Vsg~gG----t~~~~ie~~r~~~~~~~~~~~~~g~~t--~~~l~~~~~~~~~ipVIas 260 (333)
T TIGR02151 192 SK-E----VAKLLADAGVSAIDVAGAGG----TSWAQVENYRAKGSNLASFFNDWGIPT--AASLLEVRSDAPDAPIIAS 260 (333)
T ss_pred CH-H----HHHHHHHcCCCEEEECCCCC----CcccchhhhcccccccchhhhcccHhH--HHHHHHHHhcCCCCeEEEE
Confidence 22 2 24566789999999998642 1100 0001111 2344455442347999999
Q ss_pred CCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 274 GGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 274 GgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
|||+++.|+.+++..|||+|++||++|..
T Consensus 261 GGI~~~~di~kaLalGAd~V~igr~~L~~ 289 (333)
T TIGR02151 261 GGLRTGLDVAKAIALGADAVGMARPFLKA 289 (333)
T ss_pred CCCCCHHHHHHHHHhCCCeehhhHHHHHH
Confidence 99999999999999999999999999853
No 53
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.73 E-value=9.2e-17 Score=161.89 Aligned_cols=198 Identities=16% Similarity=0.148 Sum_probs=127.8
Q ss_pred CCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHH-
Q 013789 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK- 141 (436)
Q Consensus 63 ~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~- 141 (436)
..+.++.||++|||.++|+..|...++++||.|.+.+...+++.+....++++.+ .++|+++|++...++.-..
T Consensus 6 ~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~-----t~~pfgvnl~~~~~~~~~~~ 80 (330)
T PF03060_consen 6 ELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRAL-----TDKPFGVNLFLPPPDPADEE 80 (330)
T ss_dssp HHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH------SS-EEEEEETTSTTHHHH-
T ss_pred HHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhh-----ccccccccccccCcccchhh
Confidence 4567899999999999999999999999999999998888888787666666666 5669999999764322111
Q ss_pred ----------HHHHHHHCC--------------CCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcE
Q 013789 142 ----------ATELANAYN--------------YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV 197 (436)
Q Consensus 142 ----------aA~~~~~~G--------------~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPv 197 (436)
...+..+.| .+.|-..+|.|.. ++++.+++ .|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~--------------------~~i~~l~~-~gi~v 139 (330)
T PF03060_consen 81 DAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP--------------------EVIERLHA-AGIKV 139 (330)
T ss_dssp HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H--------------------HHHHHHHH-TT-EE
T ss_pred hhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH--------------------HHHHHHHH-cCCcc
Confidence 122333334 4477777776642 22333332 36666
Q ss_pred EEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC
Q 013789 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (436)
Q Consensus 198 svKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~ 277 (436)
...+. +..+ ++.+.+.|+|.|+++|.++ +|..+. .+. ..+.++.++.+.+ ++|||+.|||.
T Consensus 140 ~~~v~-------s~~~-----A~~a~~~G~D~iv~qG~eA--GGH~g~---~~~-~~~~L~~~v~~~~-~iPViaAGGI~ 200 (330)
T PF03060_consen 140 IPQVT-------SVRE-----ARKAAKAGADAIVAQGPEA--GGHRGF---EVG-STFSLLPQVRDAV-DIPVIAAGGIA 200 (330)
T ss_dssp EEEES-------SHHH-----HHHHHHTT-SEEEEE-TTS--SEE------SSG--HHHHHHHHHHH--SS-EEEESS--
T ss_pred ccccC-------CHHH-----HHHhhhcCCCEEEEecccc--CCCCCc---ccc-ceeeHHHHHhhhc-CCcEEEecCcC
Confidence 55432 3333 3345679999999999886 343321 111 1267777777765 89999999999
Q ss_pred CHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 278 TVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 278 s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
|.+++.+++..|||+|++|+.|+..+.-
T Consensus 201 dg~~iaaal~lGA~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 201 DGRGIAAALALGADGVQMGTRFLATEES 228 (330)
T ss_dssp SHHHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred CHHHHHHHHHcCCCEeecCCeEEecccc
Confidence 9999999999999999999999988754
No 54
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.73 E-value=3.8e-17 Score=165.99 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=132.2
Q ss_pred cccCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHH
Q 013789 60 EMVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNL 139 (436)
Q Consensus 60 ~~i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~ 139 (436)
.+++++.++.||++|||.++|+.+|+.+++++||+|++.++.+. ..+++..|+..||++.++
T Consensus 39 ~~~~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~---------------~~~~~~e~l~~qi~~~~~--- 100 (368)
T PRK08649 39 WQIDAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW---------------TRYEDPEPILDEIASLGK--- 100 (368)
T ss_pred eeecceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc---------------ccCCCHHHHHHHHHhcCc---
Confidence 34789999999999999999999999999999999998854433 111234456677777666
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHH
Q 013789 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (436)
Q Consensus 140 ~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la 219 (436)
.++++.+++.+.+ | .+|+++.+++++++++ + |++|+|++. ..+.+++
T Consensus 101 ~~~~~~~~~~~~~--------P---------------~~p~l~~~iv~~~~~~-~--V~v~vr~~~---~~~~e~a---- 147 (368)
T PRK08649 101 DEATRLMQELYAE--------P---------------IKPELITERIAEIRDA-G--VIVAVSLSP---QRAQELA---- 147 (368)
T ss_pred HHHHHHHHHhhcC--------C---------------CCHHHHHHHHHHHHhC-e--EEEEEecCC---cCHHHHH----
Confidence 4566666665422 2 4589999999999986 4 556776632 2233443
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
+.+.++|+|.|++|||+..+...... .+|..+.+++++. ++|||+ |+|.+.+++++++++|||+||+|+|-
T Consensus 148 ~~l~eaGvd~I~vhgrt~~~~h~~~~-------~~~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 148 PTVVEAGVDLFVIQGTVVSAEHVSKE-------GEPLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCc-------CCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 34567999999999998533221111 0255566777765 899999 99999999999999999999999874
No 55
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.71 E-value=5.6e-16 Score=148.47 Aligned_cols=192 Identities=14% Similarity=0.131 Sum_probs=139.9
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCH-HHHHHHHHHH
Q 013789 68 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATELA 146 (436)
Q Consensus 68 ~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p-~~~~~aA~~~ 146 (436)
++||++|||+|+|+..++..+.++|+.|++.+++++.+.+.+..+.+... .+.|+++|++.+++ +...+.++.+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~-----~~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRAL-----TDKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHh-----cCCCeEEeEecCCCCcCHHHHHHHH
Confidence 57999999999999999999999998899999999888776544333332 14688999999875 3456777888
Q ss_pred HHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCC
Q 013789 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 226 (436)
Q Consensus 147 ~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~G 226 (436)
.++|+|+|.++.+++. ++++.+++ .++++.+++. +.+++ . .+.+.|
T Consensus 77 ~~~g~d~v~l~~~~~~---------------------~~~~~~~~-~~i~~i~~v~-------~~~~~----~-~~~~~g 122 (236)
T cd04730 77 LEEGVPVVSFSFGPPA---------------------EVVERLKA-AGIKVIPTVT-------SVEEA----R-KAEAAG 122 (236)
T ss_pred HhCCCCEEEEcCCCCH---------------------HHHHHHHH-cCCEEEEeCC-------CHHHH----H-HHHHcC
Confidence 8999999999866221 12223332 3677766542 22222 2 234589
Q ss_pred ccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 227 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 227 vd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+|+|.++++.. +|..... ....++++.++.+.. ++||+++|||.+++++.++++.|||+|++|++++..+..
T Consensus 123 ad~i~~~~~~~--~G~~~~~----~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 123 ADALVAQGAEA--GGHRGTF----DIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEES 194 (236)
T ss_pred CCEEEEeCcCC--CCCCCcc----ccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCccc
Confidence 99999998743 2322110 012377788877655 899999999999999999999999999999999987764
No 56
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.70 E-value=9.4e-16 Score=154.09 Aligned_cols=204 Identities=15% Similarity=0.072 Sum_probs=134.0
Q ss_pred CCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHH
Q 013789 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKA 142 (436)
Q Consensus 63 ~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~a 142 (436)
+.+.++.||++|||.++|+..|+..+.++||.|++..+|.. +.+.... ++. .+...+.+..+.+++....+
T Consensus 29 ~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~~~~i---~~v-----k~~l~v~~~~~~~~~~~~~~ 99 (325)
T cd00381 29 KNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQAEEV---RKV-----KGRLLVGAAVGTREDDKERA 99 (325)
T ss_pred CccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHHHHHH---HHh-----ccCceEEEecCCChhHHHHH
Confidence 34889999999999999999999999999999999887643 3332222 221 13344445566666665554
Q ss_pred HHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC-CcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 143 A~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~-iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
.. +.++|+|.|++++.. | +++.+.++++.++++.. +||.+ |-. .+.+. ++.
T Consensus 100 ~~-l~eagv~~I~vd~~~-----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~v--~t~~~-----A~~ 151 (325)
T cd00381 100 EA-LVEAGVDVIVIDSAH-----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GNV--VTAEA-----ARD 151 (325)
T ss_pred HH-HHhcCCCEEEEECCC-----------C-----CcHHHHHHHHHHHHHCCCceEEE----CCC--CCHHH-----HHH
Confidence 44 455799999998632 1 12456778888887653 44433 321 23333 233
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~--~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
+.++|+|+|.+++..... ..... ........+..+..+.+.. .++|||++|||.++.|+.++++.|||+||+||.+
T Consensus 152 l~~aGaD~I~vg~g~G~~-~~t~~-~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~f 229 (325)
T cd00381 152 LIDAGADGVKVGIGPGSI-CTTRI-VTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLL 229 (325)
T ss_pred HHhcCCCEEEECCCCCcC-cccce-eCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchh
Confidence 456999999996432100 00000 0011222355555554432 1699999999999999999999999999999999
Q ss_pred HhCCcc
Q 013789 300 YQNPWY 305 (436)
Q Consensus 300 l~~P~l 305 (436)
.....-
T Consensus 230 a~t~Es 235 (325)
T cd00381 230 AGTDES 235 (325)
T ss_pred cccccC
Confidence 987643
No 57
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.64 E-value=2.2e-15 Score=149.59 Aligned_cols=191 Identities=14% Similarity=0.119 Sum_probs=133.7
Q ss_pred CCcEEEcCCCCCCh-HHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCH-HHHHHHHHH
Q 013789 68 PPWFSVAPMMDWTD-NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATEL 145 (436)
Q Consensus 68 ~n~iilAPMagvtd-~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p-~~~~~aA~~ 145 (436)
+.||+++||+++++ +.|...++++||+|++-....+++.+....++++.++ +++||+|||....+ +.+.+..+.
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~----tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAELL----GDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHhc----cCCCeEEEEeccCCCcchHHHHHH
Confidence 57999999999998 8999999999999998888888777655554444421 57999999954321 223445666
Q ss_pred HHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcC
Q 013789 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 225 (436)
Q Consensus 146 ~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~ 225 (436)
+.+.+++.|-+..|.|.. + +.++ ..|+.+...+. +..+ ++.+++.
T Consensus 78 i~e~~v~~V~~~~G~P~~------------------~----~~lk-~~Gi~v~~~v~-------s~~~-----A~~a~~~ 122 (320)
T cd04743 78 VRAIKPTFALIAGGRPDQ------------------A----RALE-AIGISTYLHVP-------SPGL-----LKQFLEN 122 (320)
T ss_pred HHhcCCcEEEEcCCChHH------------------H----HHHH-HCCCEEEEEeC-------CHHH-----HHHHHHc
Confidence 677888888777665531 1 2222 23666654322 2222 3455689
Q ss_pred CccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC---------CCcEEEEeCCCCCHHHHHHHHHcCC------
Q 013789 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---------PDLTFTLNGGINTVDEVNAALRKGA------ 290 (436)
Q Consensus 226 Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~---------~~iPVIanGgI~s~~da~~~l~~Ga------ 290 (436)
|+|.|+++|.++ +|..+. +.+ +.++.++++.+ .++|||+.|||.|.+++..++..||
T Consensus 123 GaD~vVaqG~EA--GGH~G~----~~t--~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~G 194 (320)
T cd04743 123 GARKFIFEGREC--GGHVGP----RSS--FVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERG 194 (320)
T ss_pred CCCEEEEecCcC--cCCCCC----CCc--hhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccc
Confidence 999999999997 344321 122 33333333221 2799999999999999999999888
Q ss_pred --CeeeehHHHHhCCcc
Q 013789 291 --HHVMVGRAAYQNPWY 305 (436)
Q Consensus 291 --d~VmiGRa~l~~P~l 305 (436)
+||++|+.|+..+.-
T Consensus 195 a~~GV~mGTrFl~t~Es 211 (320)
T cd04743 195 AKVGVLMGTAYLFTEEA 211 (320)
T ss_pred cccEEEEccHHhcchhh
Confidence 899999999987664
No 58
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.63 E-value=1e-14 Score=149.49 Aligned_cols=213 Identities=12% Similarity=0.078 Sum_probs=135.8
Q ss_pred cCCeecCCcEEEcCCC-CCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCC--CHHH
Q 013789 62 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS--NLDN 138 (436)
Q Consensus 62 i~~l~l~n~iilAPMa-gvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~--~p~~ 138 (436)
...+.++.|||+|||+ |+|+..+...+.++||+|++.+..++++.+.....++++.+ ..++|++|||+.+ +++.
T Consensus 7 ~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~l---t~~~PfGVNL~~~~~~~~~ 83 (418)
T cd04742 7 KEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAAL---GNGEPYGVNLIHSPDEPEL 83 (418)
T ss_pred HHHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhc---cCCCCeEEeeecCCCCchh
Confidence 3557789999999999 79999999999999999999999999888866655554422 1278999999974 3444
Q ss_pred HHHHHHHHHHCCCCEEEecC-CCCCCcccc-CCCccccccCChHHHHHHHHHHhhccCCcEEEEe---------------
Q 013789 139 LAKATELANAYNYDEINLNC-GCPSPKVAG-HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC--------------- 201 (436)
Q Consensus 139 ~~~aA~~~~~~G~d~IdLN~-gcP~~~v~r-~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi--------------- 201 (436)
..+..+++.+.|+..|+... +-+.+...+ +.. |.....+-.. .....|..|+
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~-G~~~~~~g~~----------~~~~~ViakVsr~evAs~~f~ppp~ 152 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAK-GLRRDADGRV----------QIANRIIAKVSRPEVAEAFMSPAPE 152 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHHhc-CCcccccccc----------cccceEEEecCChhhhhhhcCCCCH
Confidence 45567788888998887753 111111111 011 1100000000 0001122221
Q ss_pred -------ccCCCCCCcHHHHHHHHHHHhhcCC-ccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH---HhcC-----
Q 013789 202 -------RIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDF----- 265 (436)
Q Consensus 202 -------R~G~~~~~~~~~~~~~la~~~e~~G-vd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l---~~~~----- 265 (436)
..|.- +.+ + ++++++.| +|.|+++ .++ +|..+ + .++ +.+++.+ ++.+
T Consensus 153 ~~v~~L~~~G~i---t~~---e--A~~A~~~g~aD~Ivvq-~EA--GGH~g--~--~~~--~~Llp~v~~l~d~v~~~~~ 215 (418)
T cd04742 153 RILKKLLAEGKI---TEE---Q--AELARRVPVADDITVE-ADS--GGHTD--N--RPL--SVLLPTIIRLRDELAARYG 215 (418)
T ss_pred HHHHHHHHcCCC---CHH---H--HHHHHhCCCCCEEEEc-ccC--CCCCC--C--ccH--HhHHHHHHHHHHHHhhccc
Confidence 11111 222 2 44566788 5999998 444 35432 1 122 3333333 3222
Q ss_pred --CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 266 --PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 266 --~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
.+||||+.|||.|++++.+++..|||+|++|+.++.++.-
T Consensus 216 ~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea 257 (418)
T cd04742 216 YRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEA 257 (418)
T ss_pred cCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccc
Confidence 1699999999999999999999999999999999998764
No 59
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=146.18 Aligned_cols=201 Identities=14% Similarity=0.131 Sum_probs=132.6
Q ss_pred cCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCH-----
Q 013789 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL----- 136 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p----- 136 (436)
++.+.++.|||++||+++|+..+...+++.||.|.+-.-....+.+....++.... .++|+..|.|++.+
T Consensus 8 ~~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~-----~~~p~~~~~f~~~~~~v~~ 82 (336)
T COG2070 8 ILLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRAL-----TDKPFVANNFGSAPAPVNV 82 (336)
T ss_pred hcccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHh-----cCCcchhcccccccccchh
Confidence 68888999999999999999999999999999996655555555554443333333 45665555554221
Q ss_pred -------HHHHHHHH-HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCC
Q 013789 137 -------DNLAKATE-LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 208 (436)
Q Consensus 137 -------~~~~~aA~-~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~ 208 (436)
+.+.+... +++++|...+-..+|-| |. +.++.+++ .++.+..++-.
T Consensus 83 ~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~-----------------~~---~~i~~~~~-~g~~v~~~v~~----- 136 (336)
T COG2070 83 NILVARRNAAEAGVDAIIEGAGVPVVSTSFGAP-----------------PA---EFVARLKA-AGIKVIHSVIT----- 136 (336)
T ss_pred heecccccchHHhhhhHHhcCCCCEEeccCCCC-----------------cH---HHHHHHHH-cCCeEEEEeCC-----
Confidence 22333333 23344655554444421 11 22333333 45555554322
Q ss_pred CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCC-cEEEEeCCCCCHHHHHHHHH
Q 013789 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR 287 (436)
Q Consensus 209 ~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~-iPVIanGgI~s~~da~~~l~ 287 (436)
..+ ++..++.|+|.|+++|-++ +|..+....... -..++.++++.+ + ||||++|||.|.+++.+++.
T Consensus 137 --~~~-----A~~~~~~G~d~vI~~g~eA--GGH~g~~~~~~~--t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~AAla 204 (336)
T COG2070 137 --VRE-----ALKAERAGADAVIAQGAEA--GGHRGGVDLEVS--TFALVPEVVDAV-DGIPVIAAGGIADGRGIAAALA 204 (336)
T ss_pred --HHH-----HHHHHhCCCCEEEecCCcC--CCcCCCCCCCcc--HHHHHHHHHHHh-cCCCEEEecCccChHHHHHHHH
Confidence 111 4456789999999999876 344332111122 267888888887 7 99999999999999999999
Q ss_pred cCCCeeeehHHHHhCCcc
Q 013789 288 KGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 288 ~Gad~VmiGRa~l~~P~l 305 (436)
.|||+|++|+.|+....-
T Consensus 205 lGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 205 LGADGVQMGTRFLATKEA 222 (336)
T ss_pred hccHHHHhhhhhhccccc
Confidence 999999999999987543
No 60
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.59 E-value=4e-15 Score=143.99 Aligned_cols=147 Identities=22% Similarity=0.246 Sum_probs=105.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHH
Q 013789 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (436)
Q Consensus 140 ~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la 219 (436)
.++|++++++|++.|++|.|||++.+. .+ |.+++++|+.+.+ |++.+++||+.|+|.|. + .+ +
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~--~g-g~~Rm~~p~~I~a----Ik~~V~iPVigk~Righ-----~---~E--a 89 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRA--AG-GVARMADPKMIEE----IMDAVSIPVMAKARIGH-----F---VE--A 89 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhh--cC-CeeecCCHHHHHH----HHHhCCCCeEEeehhhH-----H---HH--H
Confidence 368899999999999999999998654 34 9999999999884 45556999999999874 1 11 2
Q ss_pred HHhhcCCccEEEEccCcc--------------------------------------------------------------
Q 013789 220 KVSSLSPTRHFIIHSRKA-------------------------------------------------------------- 237 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~-------------------------------------------------------------- 237 (436)
+.+++.|+|.|.-+-|..
T Consensus 90 ~~L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~ 169 (293)
T PRK04180 90 QILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGE 169 (293)
T ss_pred HHHHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHH
Confidence 233445555554322210
Q ss_pred --cccCCCCCCC---CCCCCccHHHHHHHHhcCCCcEEE--EeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 238 --LLNGISPAEN---RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 238 --~~~G~~~~~~---~~i~~~~~~~v~~l~~~~~~iPVI--anGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.+.|+.+..- .......|+++.++++.. ++||| +.|||.+++++..++++|||+|++|++++..+.
T Consensus 170 i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~d 242 (293)
T PRK04180 170 IRRLTSMSEDELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGD 242 (293)
T ss_pred HHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCC
Confidence 0112221110 001223588888888865 89998 999999999999999999999999999986554
No 61
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.58 E-value=7.7e-14 Score=143.94 Aligned_cols=210 Identities=12% Similarity=0.084 Sum_probs=136.4
Q ss_pred cCCeecCCcEEEcCCC-CCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCc-EEEEEcCCC--HH
Q 013789 62 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP-IVLQIGGSN--LD 137 (436)
Q Consensus 62 i~~l~l~n~iilAPMa-gvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~p-i~vQL~g~~--p~ 137 (436)
...++++.||++|||+ |+|+..+...+.++||+|++.+..++++.+.....+++..+ .++| ++|||+.+. ++
T Consensus 12 ~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~----~~~p~fGVNL~~~~~~~~ 87 (444)
T TIGR02814 12 REDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQAL----PGGPAYGVNLIHSPSDPA 87 (444)
T ss_pred HHHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhc----CCCCceEEEecccCCCcc
Confidence 3567889999999999 79999999999999999999999999888866655555542 2336 999999864 32
Q ss_pred HHHHHHHHHHHCCCCEEEecCC---CCCCccccCCCccc------------ccc---CChHHHHH--------HHHHHhh
Q 013789 138 NLAKATELANAYNYDEINLNCG---CPSPKVAGHGCFGV------------SLM---LDPKFVGE--------AMSVIAA 191 (436)
Q Consensus 138 ~~~~aA~~~~~~G~d~IdLN~g---cP~~~v~r~g~yG~------------~Ll---~~~~~l~e--------iv~av~~ 191 (436)
.-.+..+++.+.|++.|+...+ .|.. +.-+.. |. .++ .+++.+.. +++.++
T Consensus 88 ~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~~-G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~- 164 (444)
T TIGR02814 88 LEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRAK-GLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLL- 164 (444)
T ss_pred cHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhhc-cccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHH-
Confidence 2234556777889998887643 3321 110111 11 110 12222211 111111
Q ss_pred ccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCC-ccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHH---hcC--
Q 013789 192 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RDF-- 265 (436)
Q Consensus 192 ~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~G-vd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~---~~~-- 265 (436)
..|.- +.+| +.++++.| +|.|++. .++ +|..+ ..++ +.+++.+. +.+
T Consensus 165 ----------~~G~i---t~eE-----A~~a~~~g~aD~Ivve-~EA--GGHtg----~~~~--~~Llp~i~~lrd~v~~ 217 (444)
T TIGR02814 165 ----------AEGRI---TREE-----AELARRVPVADDICVE-ADS--GGHTD----NRPL--VVLLPAIIRLRDTLMR 217 (444)
T ss_pred ----------HcCCC---CHHH-----HHHHHhCCCCcEEEEe-ccC--CCCCC----CCcH--HHHHHHHHHHHHHHhh
Confidence 11111 2222 34566788 5999886 343 35432 1122 45555553 221
Q ss_pred -----CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 266 -----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 266 -----~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
..||||+.|||.|++++.+++..|||+|++|+.++.++.-
T Consensus 218 ~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 218 RYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred cccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 2689999999999999999999999999999999998764
No 62
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.50 E-value=2.1e-12 Score=118.17 Aligned_cols=193 Identities=14% Similarity=0.079 Sum_probs=130.0
Q ss_pred EEEcCCCCCC-hHHHHHHH-HHcCCCcEEEeccccchhhhhcccc---hhhhhccCCCCCcEEEEEcCCCHHHHH-HHHH
Q 013789 71 FSVAPMMDWT-DNHYRTLA-RLISKHAWLYTEMLAAETIIYQQGN---LDRFLAFSPEQHPIVLQIGGSNLDNLA-KATE 144 (436)
Q Consensus 71 iilAPMagvt-d~~fr~~~-~~~Gg~gl~~temv~~~~l~~~~~~---~~~~~~~~~~~~pi~vQL~g~~p~~~~-~aA~ 144 (436)
+.+++|.+-. +.....+- ...||++.+.++............. +... .+..+.|+++|++.+++.... .+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~ 78 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEV--AAETDLPLGVQLAINDAAAAVDIAAA 78 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHH--HhhcCCcEEEEEccCCchhhhhHHHH
Confidence 4678888865 22222221 2345688888887665533221111 1111 233578999999998876543 3467
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhh
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSS 223 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e 223 (436)
.+.++|+|+|++|.+|+.. ++...++++++++.+ ++|+.+|++....... . .++
T Consensus 79 ~~~~~g~d~v~l~~~~~~~---------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~----~------~~~ 133 (200)
T cd04722 79 AARAAGADGVEIHGAVGYL---------------AREDLELIRELREAVPDVKVVVKLSPTGELAA----A------AAE 133 (200)
T ss_pred HHHHcCCCEEEEeccCCcH---------------HHHHHHHHHHHHHhcCCceEEEEECCCCccch----h------hHH
Confidence 8899999999999999863 678889999999887 8999999987433211 0 034
Q ss_pred cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 224 ~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
+.|+|.|.++++.....+... .+.....+..+.+ ..++||+++|||.+++++.++++.|||+|++||
T Consensus 134 ~~g~d~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 134 EAGVDEVGLGNGGGGGGGRDA------VPIADLLLILAKR-GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HcCCCEEEEcCCcCCCCCccC------chhHHHHHHHHHh-cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 689999999987652211110 0101223333333 358999999999999999999999999999997
No 63
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.50 E-value=7.4e-13 Score=135.50 Aligned_cols=207 Identities=12% Similarity=0.088 Sum_probs=130.5
Q ss_pred CCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhh------------------------
Q 013789 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL------------------------ 118 (436)
Q Consensus 63 ~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~------------------------ 118 (436)
..+.++.||++|||.++|+..+..+++++||.|++.. ..+++.+....++.++..
T Consensus 37 ~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~-~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~ 115 (404)
T PRK06843 37 KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHK-NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQH 115 (404)
T ss_pred hccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecC-CCCHHHHHHHHHHHHhhcCCCceeecccccccchhheecccc
Confidence 5788899999999999999999999999999998865 455665544332222210
Q ss_pred --------------cc----CCCCCcEEEEEc-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCCh
Q 013789 119 --------------AF----SPEQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 179 (436)
Q Consensus 119 --------------~~----~~~~~pi~vQL~-g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~ 179 (436)
++ .+....+.|-.. |..++.+.++.. +.++|+|.|-|...-+. .
T Consensus 116 ~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~-lv~aGvDvI~iD~a~g~----------------~ 178 (404)
T PRK06843 116 LEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEE-LVKAHVDILVIDSAHGH----------------S 178 (404)
T ss_pred chHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHH-HHhcCCCEEEEECCCCC----------------C
Confidence 00 000111222111 335665554444 45679999887654322 3
Q ss_pred HHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCC--CCCCCCCCCCccHH
Q 013789 180 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI--SPAENRTIPPLKYE 256 (436)
Q Consensus 180 ~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~--~~~~~~~i~~~~~~ 256 (436)
+.+.++++.+++.+ +.+|.++- ..+.++. +.+.++|+|+|.+ |-+. |. .......++...+.
T Consensus 179 ~~~~~~v~~ik~~~p~~~vi~g~------V~T~e~a-----~~l~~aGaD~I~v-G~g~---Gs~c~tr~~~g~g~p~lt 243 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLDLIAGN------IVTKEAA-----LDLISVGADCLKV-GIGP---GSICTTRIVAGVGVPQIT 243 (404)
T ss_pred hhHHHHHHHHHhhCCCCcEEEEe------cCCHHHH-----HHHHHcCCCEEEE-CCCC---CcCCcceeecCCCCChHH
Confidence 45788888888876 56664431 2344432 3345689999987 4332 10 00000011111233
Q ss_pred H---HHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 257 Y---YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 257 ~---v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
. +.++++.. ++|||+.|||.++.|+.+++..||++||+|+.+.+..
T Consensus 244 ai~~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~ 292 (404)
T PRK06843 244 AICDVYEVCKNT-NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTK 292 (404)
T ss_pred HHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeee
Confidence 3 34444443 7999999999999999999999999999999998754
No 64
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.47 E-value=2.4e-12 Score=130.45 Aligned_cols=208 Identities=16% Similarity=0.143 Sum_probs=134.0
Q ss_pred CCeecCCcEEEcCCCCC------ChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcC-CC
Q 013789 63 ARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SN 135 (436)
Q Consensus 63 ~~l~l~n~iilAPMagv------td~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g-~~ 135 (436)
=+..+.-||.+|||+.. .+....+++.++| ...+.+-+.+ . .++.+... ..+.|.-.||.- .|
T Consensus 75 lG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g-~~~~lSt~ss-~-------slEev~~~-~~~~~~wfQlY~~~d 144 (367)
T TIGR02708 75 LGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFG-SIYTTSSYST-A-------DLPEISEA-LNGTPHWFQFYMSKD 144 (367)
T ss_pred CCcccccccccCcHHHhhccCCcHHHHHHHHHHHcC-CCeeeccccc-C-------CHHHHHhh-cCCCceEEEEeccCC
Confidence 35668889999999742 2466677777775 4444333311 1 12222221 124589999987 45
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccc----cC----------------CCccccc-----cCChHHHHHHHHHHh
Q 013789 136 LDNLAKATELANAYNYDEINLNCGCPSPKVA----GH----------------GCFGVSL-----MLDPKFVGEAMSVIA 190 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~----r~----------------g~yG~~L-----l~~~~~l~eiv~av~ 190 (436)
.+...+..++++++||++|-|..-+|..-.. |. ...+... ..++.+--+-++.++
T Consensus 145 r~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~ 224 (367)
T TIGR02708 145 DGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIA 224 (367)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHH
Confidence 5555778899999999988887665532110 00 0001000 001222225677788
Q ss_pred hccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE--ccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CC
Q 013789 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PD 267 (436)
Q Consensus 191 ~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v--hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~ 267 (436)
+..++||.|| |+.. .++ ++.+.++|+|+|.| ||+.+.+.+ +..|+.+.++++.+ .+
T Consensus 225 ~~~~~PvivK---Gv~~---~ed-----a~~a~~~Gvd~I~VS~HGGrq~~~~----------~a~~~~L~ei~~av~~~ 283 (367)
T TIGR02708 225 GYSGLPVYVK---GPQC---PED-----ADRALKAGASGIWVTNHGGRQLDGG----------PAAFDSLQEVAEAVDKR 283 (367)
T ss_pred HhcCCCEEEe---CCCC---HHH-----HHHHHHcCcCEEEECCcCccCCCCC----------CcHHHHHHHHHHHhCCC
Confidence 8889999999 4332 222 33456799998866 776543322 22377788887665 36
Q ss_pred cEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 268 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 268 iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
+|||++|||+++.|+.+++.+|||+|||||.+|.
T Consensus 284 i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 284 VPIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred CcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 9999999999999999999999999999999865
No 65
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.47 E-value=1.2e-12 Score=132.37 Aligned_cols=211 Identities=18% Similarity=0.181 Sum_probs=136.5
Q ss_pred cCCeecCCcEEEcCCCCC------ChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcC-C
Q 013789 62 VARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-S 134 (436)
Q Consensus 62 i~~l~l~n~iilAPMagv------td~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g-~ 134 (436)
+=+..+.-||.+|||... .+....+.+.++| ...+.+.+-+ . .++.+.... .+.+...||.. .
T Consensus 66 ~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~g-i~~~lSt~s~-~-------s~Eei~~~~-~~~~~wfQlY~~~ 135 (351)
T cd04737 66 LLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVG-SLFSISTYSN-T-------SLEEIAKAS-NGGPKWFQLYMSK 135 (351)
T ss_pred eCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcC-CCEEecCCCC-C-------CHHHHHHhc-CCCCeEEEEeecC
Confidence 446778889999999742 3455666677765 4444433321 1 122222211 14579999986 4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCC---------------Cc------ccccc-----CChHHHHHHHHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG---------------CF------GVSLM-----LDPKFVGEAMSV 188 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g---------------~y------G~~Ll-----~~~~~l~eiv~a 188 (436)
|.+...+..++++++|+..|-+...+|..-...++ .+ |.... .++.+--+.++.
T Consensus 136 d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (351)
T cd04737 136 DDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEF 215 (351)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHH
Confidence 56667778889999999998887766542111000 00 00000 011233466778
Q ss_pred HhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE--ccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC
Q 013789 189 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFP 266 (436)
Q Consensus 189 v~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v--hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~ 266 (436)
+++..++||.+| |+. +.++ ++.+.++|+|+|+| ||+.....+ +..++.++++++.+.
T Consensus 216 lr~~~~~PvivK---gv~---~~~d-----A~~a~~~G~d~I~vsnhGGr~ld~~----------~~~~~~l~~i~~a~~ 274 (351)
T cd04737 216 IAKISGLPVIVK---GIQ---SPED-----ADVAINAGADGIWVSNHGGRQLDGG----------PASFDSLPEIAEAVN 274 (351)
T ss_pred HHHHhCCcEEEe---cCC---CHHH-----HHHHHHcCCCEEEEeCCCCccCCCC----------chHHHHHHHHHHHhC
Confidence 888889999999 332 2222 33456799999999 765443222 223777888876553
Q ss_pred -CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 267 -DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 267 -~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
++|||++|||.++.|+.+++.+|||+|||||+++...
T Consensus 275 ~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 275 HRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 6999999999999999999999999999999887643
No 66
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.47 E-value=3.3e-12 Score=129.08 Aligned_cols=215 Identities=14% Similarity=0.193 Sum_probs=137.1
Q ss_pred cCCeecCCcEEEcCCCCC---C---hHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEc-CC
Q 013789 62 VARQYLPPWFSVAPMMDW---T---DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GS 134 (436)
Q Consensus 62 i~~l~l~n~iilAPMagv---t---d~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~-g~ 134 (436)
+=+..+.-||++|||+.. . +..+.+.+.+.| ..++.+-+-+. .++.+.+....+.|+.+||. ..
T Consensus 58 ~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~g-i~~~lss~s~~--------s~e~v~~~~~~~~~~w~Qly~~~ 128 (344)
T cd02922 58 ILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHG-ILQMISTNASC--------SLEEIVDARPPDQPLFFQLYVNK 128 (344)
T ss_pred ECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcC-CCEEecCcccC--------CHHHHHHhcCCCCcEEEEEeecC
Confidence 335678889999999832 2 335566666665 44433322211 12222222123468889996 56
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----cCC--------------Cc----cccc---cCChHHHHHHHHHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVA----GHG--------------CF----GVSL---MLDPKFVGEAMSVI 189 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~----r~g--------------~y----G~~L---l~~~~~l~eiv~av 189 (436)
|.+...+..++++++|++.+-++...|..-.. |++ .+ +... ..++....+.++.+
T Consensus 129 d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 208 (344)
T cd02922 129 DRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWL 208 (344)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHH
Confidence 77888888999999999999998888743210 000 00 0000 11234556778888
Q ss_pred hhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHh---cC-
Q 013789 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR---DF- 265 (436)
Q Consensus 190 ~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~---~~- 265 (436)
++..++||.+| |+. +.++ ++.+.++|+|+|+|++.- |... + ...++ .+.+.++.+ ..
T Consensus 209 ~~~~~~PvivK---gv~---~~~d-----A~~a~~~G~d~I~vsnhg----G~~~-d-~~~~~--~~~L~~i~~~~~~~~ 269 (344)
T cd02922 209 RKHTKLPIVLK---GVQ---TVED-----AVLAAEYGVDGIVLSNHG----GRQL-D-TAPAP--IEVLLEIRKHCPEVF 269 (344)
T ss_pred HHhcCCcEEEE---cCC---CHHH-----HHHHHHcCCCEEEEECCC----cccC-C-CCCCH--HHHHHHHHHHHHHhC
Confidence 88889999999 432 2222 334567999999997532 2211 1 12333 344444433 22
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 266 ~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.++|||+.|||.++.|+.+++..||++|+|||+++..+-
T Consensus 270 ~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 270 DKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 269999999999999999999999999999999998664
No 67
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.42 E-value=1.3e-11 Score=123.51 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=133.1
Q ss_pred cCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEc-CCCHHHHH
Q 013789 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GSNLDNLA 140 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~-g~~p~~~~ 140 (436)
+.++.+.-||+.++|.+..+..+..++++.|+.+.+.= | .++.. ..+.+.. ....+++++. |..++++.
T Consensus 31 ~~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~~e~~-------~~~~r~~-~~~~l~v~~~vg~~~~~~~ 100 (326)
T PRK05458 31 LGPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-DPEAR-------IPFIKDM-HEQGLIASISVGVKDDEYD 100 (326)
T ss_pred ECCcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-CHHHH-------HHHHHhc-cccccEEEEEecCCHHHHH
Confidence 56788999999999999999999999999998776654 2 32221 1111111 1223466665 34577777
Q ss_pred HHHHHHHH-CCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC-CcEEEEeccCCCCCCcHHHHHHHH
Q 013789 141 KATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFI 218 (436)
Q Consensus 141 ~aA~~~~~-~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~-iPvsvKiR~G~~~~~~~~~~~~~l 218 (436)
++.++++. .|+|.|.|.+..+. .+.+.++++.+++.++ +||.++- . .+.++.
T Consensus 101 ~~~~Lv~ag~~~d~i~iD~a~gh----------------~~~~~e~I~~ir~~~p~~~vi~g~-V-----~t~e~a---- 154 (326)
T PRK05458 101 FVDQLAAEGLTPEYITIDIAHGH----------------SDSVINMIQHIKKHLPETFVIAGN-V-----GTPEAV---- 154 (326)
T ss_pred HHHHHHhcCCCCCEEEEECCCCc----------------hHHHHHHHHHHHhhCCCCeEEEEe-c-----CCHHHH----
Confidence 77666543 24599988765432 3457888999998874 7776651 1 133332
Q ss_pred HHHhhcCCccEEEEc---cCcccc---cCCCCCCCCCCCCccHH--HHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCC
Q 013789 219 YKVSSLSPTRHFIIH---SRKALL---NGISPAENRTIPPLKYE--YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (436)
Q Consensus 219 a~~~e~~Gvd~I~vh---grt~~~---~G~~~~~~~~i~~~~~~--~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Ga 290 (436)
+.+.++|+|++.++ ||.... .|.. ..+|. .+.++++.. ++|||++|||.++.|+.+++..||
T Consensus 155 -~~l~~aGad~i~vg~~~G~~~~t~~~~g~~--------~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA 224 (326)
T PRK05458 155 -RELENAGADATKVGIGPGKVCITKIKTGFG--------TGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGA 224 (326)
T ss_pred -HHHHHcCcCEEEECCCCCcccccccccCCC--------CCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCC
Confidence 33457999999987 322111 1221 12244 477777665 899999999999999999999999
Q ss_pred CeeeehHHHHhCC
Q 013789 291 HHVMVGRAAYQNP 303 (436)
Q Consensus 291 d~VmiGRa~l~~P 303 (436)
|+||+|++++...
T Consensus 225 ~aV~vG~~~~~~~ 237 (326)
T PRK05458 225 TMVMIGSLFAGHE 237 (326)
T ss_pred CEEEechhhcCCc
Confidence 9999999988644
No 68
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.42 E-value=7.1e-12 Score=129.16 Aligned_cols=209 Identities=17% Similarity=0.110 Sum_probs=129.2
Q ss_pred CCeecCCcEEEcCCCCCC-----hHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHH
Q 013789 63 ARQYLPPWFSVAPMMDWT-----DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD 137 (436)
Q Consensus 63 ~~l~l~n~iilAPMagvt-----d~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~ 137 (436)
..+.++.||+++||...+ ..++...+.+.|+.+.+....++++.+......+.++ +++||+|+. +
T Consensus 72 ~~~~i~~Pi~~~~Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Gegg~~~~~~~~~~~~i~q~-----~~~~fGv~~-----~ 141 (392)
T cd02808 72 KPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEGGELPEEREGGGDIIKQV-----ASGRFGVRP-----E 141 (392)
T ss_pred CccccccceEecCCCCCcccHHHHHHHHHHHHhcCCceeecCCCCCHHHHhhhhheEEEe-----cCCCCccCH-----H
Confidence 456788999999998433 2578888889998887777788877775544444443 455555543 1
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCC----------Cccc------cCCCcccc--------ccCChHHHHHHHHHHhhcc
Q 013789 138 NLAKATELANAYNYDEINLNCGCPS----------PKVA------GHGCFGVS--------LMLDPKFVGEAMSVIAANT 193 (436)
Q Consensus 138 ~~~~aA~~~~~~G~d~IdLN~gcP~----------~~v~------r~g~yG~~--------Ll~~~~~l~eiv~av~~~~ 193 (436)
... ..+.|||-.|=-. .|++ ++-.-|.. -..+++-+.++++.+++..
T Consensus 142 ~~~---------~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~ 212 (392)
T cd02808 142 YLN---------KADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREAT 212 (392)
T ss_pred Hcc---------cCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 110 0344444433000 0000 00000111 1146677899999999988
Q ss_pred C-CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCC---CCCCCCCCccHHHHHHHHh---cC-
Q 013789 194 N-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP---AENRTIPPLKYEYYYALLR---DF- 265 (436)
Q Consensus 194 ~-iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~---~~~~~i~~~~~~~v~~l~~---~~- 265 (436)
+ +||.+|.-.+. ..+++ ++.++..|+|+|+|.|..... |.++ .++..++. ...+..+.+ ..
T Consensus 213 ~~~pV~vK~~~~~----~~~~~----a~~~~~~g~D~I~VsG~~Ggt-g~~~~~~~~~~g~pt--~~~L~~v~~~~~~~~ 281 (392)
T cd02808 213 GGKPIGVKLVAGH----GEGDI----AAGVAAAGADFITIDGAEGGT-GAAPLTFIDHVGLPT--ELGLARAHQALVKNG 281 (392)
T ss_pred CCceEEEEECCCC----CHHHH----HHHHHHcCCCEEEEeCCCCCC-CCCcccccccCCccH--HHHHHHHHHHHHHcC
Confidence 7 99999988753 22233 445566779999998765311 1111 01112222 223333322 11
Q ss_pred --CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 266 --PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 266 --~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
.++|||+.|||.++.|+.+++..|||+|++||+++.
T Consensus 282 ~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~ 319 (392)
T cd02808 282 LRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALI 319 (392)
T ss_pred CCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHH
Confidence 269999999999999999999999999999999995
No 69
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.41 E-value=8.8e-13 Score=127.34 Aligned_cols=121 Identities=15% Similarity=0.300 Sum_probs=93.6
Q ss_pred ccccccCChHHHHHHHHHHhhcc--CCcE---EEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCC
Q 013789 171 FGVSLMLDPKFVGEAMSVIAANT--NVPV---SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 245 (436)
Q Consensus 171 yG~~Ll~~~~~l~eiv~av~~~~--~iPv---svKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~ 245 (436)
.|++++++|+++.++++.+.+.+ ++++ .+|++ ||+... .+..++ .+.+++.|++.|++|+|++...+.
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~--~~~~~~-~~~l~~~G~~~iiv~~~~~~g~~~--- 175 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDG--GDLWEV-LERLDSAGCSRYVVTDVTKDGTLT--- 175 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecC--ccHHHH-HHHHHhcCCCEEEEEeecCCCCcc---
Confidence 48999999999999999987754 4455 56664 887522 233333 345678999999999998742221
Q ss_pred CCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH---cCCCeeeehHHHHhCCcc
Q 013789 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 246 ~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~---~Gad~VmiGRa~l~~P~l 305 (436)
++ +|+.+.++++.. ++|||+||||.|.+|+.++++ +|||+||+||+++.++.-
T Consensus 176 -----G~-d~~~i~~i~~~~-~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~ 231 (241)
T PRK14024 176 -----GP-NLELLREVCART-DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFT 231 (241)
T ss_pred -----CC-CHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCC
Confidence 22 489998888764 899999999999999999864 699999999999998753
No 70
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.31 E-value=3.1e-10 Score=113.18 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=131.1
Q ss_pred cCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEc-CCCHHHHH
Q 013789 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GSNLDNLA 140 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~-g~~p~~~~ 140 (436)
+.++.+.-||+.+.|.+..+..+...+++.|+.+.+. .+ +++....- ..+..+.. +.+++. |..++++.
T Consensus 28 ~~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~h-K~-~~E~~~sf------vrk~k~~~--L~v~~SvG~t~e~~~ 97 (321)
T TIGR01306 28 LGKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMH-RF-DEESRIPF------IKDMQERG--LFASISVGVKACEYE 97 (321)
T ss_pred ECCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEe-cC-CHHHHHHH------HHhccccc--cEEEEEcCCCHHHHH
Confidence 6688999999999999999999999999998655443 22 33322110 11122222 344443 56778888
Q ss_pred HHHHHHHHCC--CCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHH
Q 013789 141 KATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 218 (436)
Q Consensus 141 ~aA~~~~~~G--~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~l 218 (436)
++.++++. | .|.|-+... + ...+.+.+.++.+++.+..|+-++--.+ +.+.
T Consensus 98 r~~~lv~a-~~~~d~i~~D~a----------h------g~s~~~~~~i~~i~~~~p~~~vi~GnV~-----t~e~----- 150 (321)
T TIGR01306 98 FVTQLAEE-ALTPEYITIDIA----------H------GHSNSVINMIKHIKTHLPDSFVIAGNVG-----TPEA----- 150 (321)
T ss_pred HHHHHHhc-CCCCCEEEEeCc----------c------CchHHHHHHHHHHHHhCCCCEEEEecCC-----CHHH-----
Confidence 88887765 5 587655432 1 1346688899999998766644442222 3322
Q ss_pred HHHhhcCCccEEEEc---cCccc---ccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCe
Q 013789 219 YKVSSLSPTRHFIIH---SRKAL---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 292 (436)
Q Consensus 219 a~~~e~~Gvd~I~vh---grt~~---~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~ 292 (436)
++.+.++|+|+|.|+ |++.+ ..|....+| .+..+.++++.. ++|||+.|||.+..|+.+++..|||+
T Consensus 151 a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~------~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~ 223 (321)
T TIGR01306 151 VRELENAGADATKVGIGPGKVCITKIKTGFGTGGW------QLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASM 223 (321)
T ss_pred HHHHHHcCcCEEEECCCCCccccceeeeccCCCch------HHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCE
Confidence 334457999999998 55421 112211111 134677777665 89999999999999999999999999
Q ss_pred eeehHHHHhC
Q 013789 293 VMVGRAAYQN 302 (436)
Q Consensus 293 VmiGRa~l~~ 302 (436)
||+||.+-+.
T Consensus 224 Vmig~~~ag~ 233 (321)
T TIGR01306 224 VMIGSLFAGH 233 (321)
T ss_pred EeechhhcCc
Confidence 9999877543
No 71
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.28 E-value=2.2e-10 Score=121.30 Aligned_cols=133 Identities=16% Similarity=0.190 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 213 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~ 213 (436)
.++.+ +-+..+.++|+|.|.|+... | +.....+.++.+++.+ ++||.+ | +..+.++
T Consensus 239 ~~~~~-~~~~~l~~ag~d~i~id~a~--------G--------~s~~~~~~i~~ik~~~~~~~v~a----G--~V~t~~~ 295 (495)
T PTZ00314 239 RPEDI-ERAAALIEAGVDVLVVDSSQ--------G--------NSIYQIDMIKKLKSNYPHVDIIA----G--NVVTADQ 295 (495)
T ss_pred CHHHH-HHHHHHHHCCCCEEEEecCC--------C--------CchHHHHHHHHHHhhCCCceEEE----C--CcCCHHH
Confidence 35554 44455667899999998741 1 1233467788888775 566655 2 1233333
Q ss_pred HHHHHHHHhhcCCccEEEEc---cCcc---cccCCCCCCCCCCCCccHHHHH---HHHhcCCCcEEEEeCCCCCHHHHHH
Q 013789 214 LCDFIYKVSSLSPTRHFIIH---SRKA---LLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNA 284 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vh---grt~---~~~G~~~~~~~~i~~~~~~~v~---~l~~~~~~iPVIanGgI~s~~da~~ 284 (436)
. +.+.++|+|+|.+- |.++ ...|.+ ++. +..+. +..++. ++|||+.|||.++.|+.+
T Consensus 296 a-----~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g------~p~--~~ai~~~~~~~~~~-~v~vIadGGi~~~~di~k 361 (495)
T PTZ00314 296 A-----KNLIDAGADGLRIGMGSGSICITQEVCAVG------RPQ--ASAVYHVARYARER-GVPCIADGGIKNSGDICK 361 (495)
T ss_pred H-----HHHHHcCCCEEEECCcCCcccccchhccCC------CCh--HHHHHHHHHHHhhc-CCeEEecCCCCCHHHHHH
Confidence 2 23446999999872 2111 001111 122 33433 334443 799999999999999999
Q ss_pred HHHcCCCeeeehHHHHhCCc
Q 013789 285 ALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 285 ~l~~Gad~VmiGRa~l~~P~ 304 (436)
+++.|||+||+|+.+.+.-.
T Consensus 362 Ala~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 362 ALALGADCVMLGSLLAGTEE 381 (495)
T ss_pred HHHcCCCEEEECchhccccc
Confidence 99999999999999876543
No 72
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.27 E-value=2.4e-10 Score=115.75 Aligned_cols=207 Identities=14% Similarity=0.118 Sum_probs=136.0
Q ss_pred cCCeecCCcEEEcCCCC------CChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCC
Q 013789 62 VARQYLPPWFSVAPMMD------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 135 (436)
Q Consensus 62 i~~l~l~n~iilAPMag------vtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~ 135 (436)
+=+..+.-||.+||++. -.+....+.+.+.| ...+.+-+-+.. ++.+.+. .+.|.-.||.-.+
T Consensus 58 llG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~ss~s--------iEeva~a--~~~~~wfQLY~~~ 126 (361)
T cd04736 58 LFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAG-IPFVLSTASNMS--------IEDVARQ--ADGDLWFQLYVVH 126 (361)
T ss_pred ECCccccccccccHHHHHhccCCcHHHHHHHHHHHcC-CcEEeeCCCCCC--------HHHHHhh--cCCCeEEEEEecC
Confidence 34566788999999853 24556677777775 556555443322 2222111 2357999999888
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCC---Cc---------------------------------------cc
Q 013789 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHG---CF---------------------------------------GV 173 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g---~y---------------------------------------G~ 173 (436)
.+......++++++||+.+-++.-+|..-...++ +| +.
T Consensus 127 r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T cd04736 127 RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAI 206 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccccccccccccccc
Confidence 6666678889999999998887655542111000 00 00
Q ss_pred c-------c--cCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEc--cCcccccCC
Q 013789 174 S-------L--MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGI 242 (436)
Q Consensus 174 ~-------L--l~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vh--grt~~~~G~ 242 (436)
. + .-++.+.-+.++.+++..+.|+.+| |+. +.++. +.+.+.|+|+|.|. |.++...
T Consensus 207 ~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV~---~~eda-----~~a~~~G~d~I~VSnhGGrqld~-- 273 (361)
T cd04736 207 DVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GIV---TAEDA-----KRCIELGADGVILSNHGGRQLDD-- 273 (361)
T ss_pred chhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cCC---CHHHH-----HHHHHCCcCEEEECCCCcCCCcC--
Confidence 0 0 0122334457888888889999998 332 33332 23446999999984 4333211
Q ss_pred CCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 243 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 243 ~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
..+ ..+.+.++++.+ ++|||+.|||.++.|+.+++..||++|++||+++.
T Consensus 274 ------~~~--~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 274 ------AIA--PIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred ------Ccc--HHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 112 377778887765 79999999999999999999999999999999874
No 73
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.23 E-value=1.4e-10 Score=113.13 Aligned_cols=183 Identities=15% Similarity=0.214 Sum_probs=117.5
Q ss_pred HHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCC-CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Q 013789 83 HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP-EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCP 161 (436)
Q Consensus 83 ~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~-~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP 161 (436)
.+.......|--.+++|..-...... ..+..-+.++.. ...| +|+.| ....+.++.+++ +.|++.|.+|
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~~~~~--~~n~~~i~~i~~~~~~p--v~~gG-Gi~s~~d~~~l~-~~G~~~vvig---- 103 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDASKRGS--EPNYELIENLASECFMP--LCYGG-GIKTLEQAKKIF-SLGVEKVSIN---- 103 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCC--cccHHHHHHHHHhCCCC--EEECC-CCCCHHHHHHHH-HCCCCEEEEC----
Confidence 34444566663345666654442221 112222212211 2334 57765 443444444444 6699998887
Q ss_pred CCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccC-----------CCCC--CcHHHHHHHHHHHhhcCCcc
Q 013789 162 SPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-----------VDDH--DSYNQLCDFIYKVSSLSPTR 228 (436)
Q Consensus 162 ~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G-----------~~~~--~~~~~~~~~la~~~e~~Gvd 228 (436)
++++.+++++.++++...+. .+++++++|.| |.+. ....++ ++.+++.|++
T Consensus 104 -----------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~----~~~~~~~g~~ 167 (258)
T PRK01033 104 -----------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLEL----AKEYEALGAG 167 (258)
T ss_pred -----------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHH----HHHHHHcCCC
Confidence 34557899999998887432 26677777665 2121 123233 3456789999
Q ss_pred EEEEccCccc--ccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHH-HcCCCeeeehHHHHhCC
Q 013789 229 HFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 229 ~I~vhgrt~~--~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l-~~Gad~VmiGRa~l~~P 303 (436)
.+++|+++.. ++| .+|+.+.++.+. .++|||++|||.+.+|+.+++ ++|||+|.+|++++..-
T Consensus 168 ~ii~~~i~~~G~~~G-----------~d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 168 EILLNSIDRDGTMKG-----------YDLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKG 233 (258)
T ss_pred EEEEEccCCCCCcCC-----------CCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCc
Confidence 9999988753 222 148888888776 489999999999999999999 59999999999987653
No 74
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.21 E-value=7.3e-10 Score=113.04 Aligned_cols=210 Identities=14% Similarity=0.121 Sum_probs=131.2
Q ss_pred cCCeecCCcEEEcCCCC------CChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEc-CC
Q 013789 62 VARQYLPPWFSVAPMMD------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GS 134 (436)
Q Consensus 62 i~~l~l~n~iilAPMag------vtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~-g~ 134 (436)
+=+..+.-||.+||++. -.+....+.+.+.| ..++.+.+.+. .++.+.+. .+.+.-.||. -.
T Consensus 64 llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g-~~~~lSt~ss~--------slEeia~~--~~~~~wfQlY~~~ 132 (381)
T PRK11197 64 LFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKG-IPFTLSTVSVC--------PIEEVAPA--IKRPMWFQLYVLR 132 (381)
T ss_pred ECCcccccchhhChHHHhhccCCchHHHHHHHHHHcC-CCEEeeCCCcC--------CHHHHHhc--cCCCeEEEEEecC
Confidence 44667788999999963 24666777777775 55555543321 12222211 2457999996 45
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCC-Cccccc-----------c-------------------C------
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-CFGVSL-----------M-------------------L------ 177 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g-~yG~~L-----------l-------------------~------ 177 (436)
|.+...+..++++++||+.+-+..-+|..-...++ .-|-.+ + +
T Consensus 133 Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~ 212 (381)
T PRK11197 133 DRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLG 212 (381)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccc
Confidence 67777788899999999998887776642211000 000000 0 0
Q ss_pred ----ChHH---H---------HHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccC
Q 013789 178 ----DPKF---V---------GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 241 (436)
Q Consensus 178 ----~~~~---l---------~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G 241 (436)
+.++ + =+-++.+++..+.||.+|-=. +.++ ++.+.+.|+|+|.|++-- |
T Consensus 213 ~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~------s~~d-----A~~a~~~Gvd~I~Vs~hG----G 277 (381)
T PRK11197 213 KPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL------DPED-----ARDAVRFGADGIVVSNHG----G 277 (381)
T ss_pred cccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecC------CHHH-----HHHHHhCCCCEEEECCCC----C
Confidence 0010 0 022677788888999988332 2222 223456999999996421 2
Q ss_pred CCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 242 ISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 242 ~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
... + ..+++ .+.+.++++.+ .++|||+.|||.++.|+.++|..||++|++||.++.
T Consensus 278 r~~-d-~~~~t--~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 278 RQL-D-GVLSS--ARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred CCC-C-CcccH--HHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 110 0 11222 55666665544 379999999999999999999999999999999874
No 75
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.20 E-value=9.7e-10 Score=112.33 Aligned_cols=210 Identities=14% Similarity=0.175 Sum_probs=131.4
Q ss_pred cCCeecCCcEEEcCCCCC------ChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCC-
Q 013789 62 VARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS- 134 (436)
Q Consensus 62 i~~l~l~n~iilAPMagv------td~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~- 134 (436)
+=+..+.-||.+||++.. .+....+.|.++| .-.+.+-+-+. .++.+.... .+.+...||.-.
T Consensus 79 llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~g-i~~~lSt~ss~--------slEeIa~~~-~~~~~wfQlY~~~ 148 (383)
T cd03332 79 LFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELG-VPYILSTASSS--------SIEDVAAAA-GDAPRWFQLYWPK 148 (383)
T ss_pred eCCccccccceechHHHHHhcCCcHHHHHHHHHHHcC-CCeeecCCCCC--------CHHHHHhhc-CCCCcEEEeeCCC
Confidence 456778889999999742 2556666777765 44554433321 122222211 235799999865
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCC---Cc------------------------c---------------
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG---CF------------------------G--------------- 172 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g---~y------------------------G--------------- 172 (436)
|.+...+..++++++||+.|-|..-.|..-...++ ++ +
T Consensus 149 dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (383)
T cd03332 149 DDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAV 228 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhH
Confidence 66777778899999999988886444331111000 00 0
Q ss_pred cccc---CChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCC
Q 013789 173 VSLM---LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 249 (436)
Q Consensus 173 ~~Ll---~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~ 249 (436)
+..+ -++.+--+-++.+++..+.||.+| |+. +.++ ++.+.+.|+|+|+|++-- |.. ....
T Consensus 229 ~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV~---~~~d-----A~~a~~~G~d~I~vsnhG----Gr~--~d~~ 291 (383)
T cd03332 229 ARFVSVFSGPSLTWEDLAFLREWTDLPIVLK---GIL---HPDD-----ARRAVEAGVDGVVVSNHG----GRQ--VDGS 291 (383)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cCC---CHHH-----HHHHHHCCCCEEEEcCCC----CcC--CCCC
Confidence 0000 011122255667777788999999 432 2333 223446999999996322 110 0112
Q ss_pred CCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 250 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 250 i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
+++ .+.+.++++.+. ++|||+.|||+++.|+.+++..|||+|++||.++
T Consensus 292 ~~t--~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 292 IAA--LDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred cCH--HHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 222 667777766553 5999999999999999999999999999999998
No 76
>PLN02535 glycolate oxidase
Probab=99.20 E-value=9.8e-10 Score=111.58 Aligned_cols=213 Identities=16% Similarity=0.137 Sum_probs=134.7
Q ss_pred cCCeecCCcEEEcCCCCC------ChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcC-C
Q 013789 62 VARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-S 134 (436)
Q Consensus 62 i~~l~l~n~iilAPMagv------td~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g-~ 134 (436)
+=+..+.-||.+||++.. .+....+.+.+.| .-.+.+-+.+ . .++.+.+. .+.+...||.- .
T Consensus 66 ~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~s~-~-------slEeva~~--~~~~~wfQlY~~~ 134 (364)
T PLN02535 66 ILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACN-TIMVLSFMAS-C-------TVEEVASS--CNAVRFLQLYVYK 134 (364)
T ss_pred ECCccccccceechHHHhcccCcchHHHHHHHHHHcC-CCeEecCccc-C-------CHHHHHhc--CCCCeEEEEeccC
Confidence 446778889999999642 3455666666665 4344333211 1 12222211 24589999996 4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCC---cc--------------------ccc------cCChHHHHHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGC---FG--------------------VSL------MLDPKFVGEA 185 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~---yG--------------------~~L------l~~~~~l~ei 185 (436)
|.+...+..++++++||+.|-+..-+|..-....|. |. ..+ .-++.+--+-
T Consensus 135 dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~ 214 (364)
T PLN02535 135 RRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKD 214 (364)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHH
Confidence 577777888999999999888877666532111110 00 000 0012222355
Q ss_pred HHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC
Q 013789 186 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF 265 (436)
Q Consensus 186 v~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~ 265 (436)
++.+++..+.||.+|--. +.++ ++.+.++|+|+|+|++.-..+. ++ .+...+.+.++.+.+
T Consensus 215 i~~lr~~~~~PvivKgV~------~~~d-----A~~a~~~GvD~I~vsn~GGr~~-----d~---~~~t~~~L~ev~~av 275 (364)
T PLN02535 215 IEWLRSITNLPILIKGVL------TRED-----AIKAVEVGVAGIIVSNHGARQL-----DY---SPATISVLEEVVQAV 275 (364)
T ss_pred HHHHHhccCCCEEEecCC------CHHH-----HHHHHhcCCCEEEEeCCCcCCC-----CC---ChHHHHHHHHHHHHH
Confidence 677788889999998332 1222 2344569999999965321111 11 122256677776653
Q ss_pred -CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 266 -PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 266 -~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.++|||+.|||.++.|+.++|..||++|+|||+++..+.
T Consensus 276 ~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 276 GGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLA 315 (364)
T ss_pred hcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhh
Confidence 369999999999999999999999999999999988654
No 77
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.20 E-value=1.6e-10 Score=117.55 Aligned_cols=208 Identities=20% Similarity=0.186 Sum_probs=128.8
Q ss_pred ccCCeecCCcEEEcCCCCC------ChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcC-
Q 013789 61 MVARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG- 133 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMagv------td~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g- 133 (436)
++-+..+.-||++|||.+. .+..+.+.|.+.| .-.+.+-+.+ ..+ +..... ...|...||.-
T Consensus 51 ~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~G-i~~~lss~s~-~~~-------e~ia~~--~~~~~~~Qly~~ 119 (356)
T PF01070_consen 51 TFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAG-IPMMLSSQSS-ASL-------EEIAAA--SGGPLWFQLYPP 119 (356)
T ss_dssp EETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHT-SEEEEETTCS-SCH-------HHHHHH--CTSEEEEEEEGB
T ss_pred eeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccC-cceeccCCcc-CCH-------HHHHhh--ccCCeEEEEEEe
Confidence 3668889999999999853 3556777778876 4333322222 211 111111 23789999964
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCC---------------cc----c----cCCC--------------------
Q 013789 134 SNLDNLAKATELANAYNYDEINLNCGCPSP---------------KV----A----GHGC-------------------- 170 (436)
Q Consensus 134 ~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~---------------~v----~----r~g~-------------------- 170 (436)
.+.+...+..++++++|++.+-++.-+|.. +. . .+..
T Consensus 120 ~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (356)
T PF01070_consen 120 RDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAA 199 (356)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCH
T ss_pred cCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchh
Confidence 467777788889999999987775433320 00 0 0000
Q ss_pred ---ccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEc--cCcccccCCCCC
Q 013789 171 ---FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPA 245 (436)
Q Consensus 171 ---yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vh--grt~~~~G~~~~ 245 (436)
|..... ++.+--+-++.+++..++||.||--+ +.++ ++.+.+.|+|+|.|. |.+....|
T Consensus 200 ~~~~~~~~~-~~~~~w~~i~~~~~~~~~pvivKgv~------~~~d-----a~~~~~~G~~~i~vs~hGGr~~d~~---- 263 (356)
T PF01070_consen 200 AARFVGSQF-DPSLTWDDIEWIRKQWKLPVIVKGVL------SPED-----AKRAVDAGVDGIDVSNHGGRQLDWG---- 263 (356)
T ss_dssp HHHHHHCHB--TT-SHHHHHHHHHHCSSEEEEEEE-------SHHH-----HHHHHHTT-SEEEEESGTGTSSTTS----
T ss_pred HHHHHHHhc-CCCCCHHHHHHHhcccCCceEEEecc------cHHH-----HHHHHhcCCCEEEecCCCcccCccc----
Confidence 000001 23333355778888899999999542 2223 233456999999995 44432111
Q ss_pred CCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 246 ENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 246 ~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
+++ .+.+.++++.+. ++|||+.|||+++.|+.+++.+||++|.+||.++.
T Consensus 264 ----~~~--~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 264 ----PPT--IDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp -----BH--HHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred ----ccc--ccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 222 666677766443 79999999999999999999999999999998864
No 78
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.19 E-value=4.1e-10 Score=113.47 Aligned_cols=202 Identities=19% Similarity=0.232 Sum_probs=124.3
Q ss_pred CCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhh---cc-CCCCCcEEEEEcCCCHHH
Q 013789 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL---AF-SPEQHPIVLQIGGSNLDN 138 (436)
Q Consensus 63 ~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~---~~-~~~~~pi~vQL~g~~p~~ 138 (436)
+++.++-||+-|||.++|+..+.....+.||.|.+.-++...++.. ..++.++.. .. ....-.+.+-+.-. +++
T Consensus 32 ~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~-~v~~vK~~~~~a~~d~~~~l~V~aavg~~-~~~ 109 (352)
T PF00478_consen 32 RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAE-EVKKVKRYYPNASKDEKGRLLVAAAVGTR-DDD 109 (352)
T ss_dssp TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHH-HHHHHHTHHTTHHBHTTSCBCEEEEEESS-TCH
T ss_pred CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHH-HHhhhccccccccccccccceEEEEecCC-HHH
Confidence 7899999999999999999999999888999999888766443221 111111111 01 11222345555433 344
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC-CcEEEEeccCCCCCCcHHHHHHH
Q 013789 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDF 217 (436)
Q Consensus 139 ~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~-iPvsvKiR~G~~~~~~~~~~~~~ 217 (436)
+.++..+ .++|+|.|-|... +| ..+.+.+.++.+++.++ +||.+- ++ .+.+...
T Consensus 110 ~er~~~L-~~agvD~ivID~a--------~g--------~s~~~~~~ik~ik~~~~~~~viaG---NV---~T~e~a~-- 164 (352)
T PF00478_consen 110 FERAEAL-VEAGVDVIVIDSA--------HG--------HSEHVIDMIKKIKKKFPDVPVIAG---NV---VTYEGAK-- 164 (352)
T ss_dssp HHHHHHH-HHTT-SEEEEE-S--------ST--------TSHHHHHHHHHHHHHSTTSEEEEE---EE----SHHHHH--
T ss_pred HHHHHHH-HHcCCCEEEcccc--------Cc--------cHHHHHHHHHHHHHhCCCceEEec---cc---CCHHHHH--
Confidence 5555554 5579998866532 11 24567788889988775 777542 11 2333222
Q ss_pred HHHHhhcCCccEEEEc---cC---cccccCCCCCCCCCCCCccHHHHHHH---HhcCCCcEEEEeCCCCCHHHHHHHHHc
Q 013789 218 IYKVSSLSPTRHFIIH---SR---KALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRK 288 (436)
Q Consensus 218 la~~~e~~Gvd~I~vh---gr---t~~~~G~~~~~~~~i~~~~~~~v~~l---~~~~~~iPVIanGgI~s~~da~~~l~~ 288 (436)
-+.++|+|+|.|= |. |+...|.+- |. +..+.++ .+++ .+|||+-|||.+.-|+.++|..
T Consensus 165 ---~L~~aGad~vkVGiGpGsiCtTr~v~GvG~------PQ--~tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~ 232 (352)
T PF00478_consen 165 ---DLIDAGADAVKVGIGPGSICTTREVTGVGV------PQ--LTAVYECAEAARDY-GVPIIADGGIRTSGDIVKALAA 232 (352)
T ss_dssp ---HHHHTT-SEEEESSSSSTTBHHHHHHSBSC------TH--HHHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHHT
T ss_pred ---HHHHcCCCEEEEeccCCcccccccccccCC------cH--HHHHHHHHHHhhhc-cCceeecCCcCcccceeeeeee
Confidence 2346999999983 11 222223221 11 3444433 4455 8999999999999999999999
Q ss_pred CCCeeeehHHHHhCC
Q 013789 289 GAHHVMVGRAAYQNP 303 (436)
Q Consensus 289 Gad~VmiGRa~l~~P 303 (436)
|||+||+|+-|-..-
T Consensus 233 GAd~VMlG~llAgt~ 247 (352)
T PF00478_consen 233 GADAVMLGSLLAGTD 247 (352)
T ss_dssp T-SEEEESTTTTTBT
T ss_pred cccceeechhhccCc
Confidence 999999999776543
No 79
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.19 E-value=2.3e-09 Score=113.71 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHH
Q 013789 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~ 214 (436)
++.+.++.. +.++|+|.|-+.+. . | ....+.+.++.+++.. +.+|.++ + ..+.++
T Consensus 247 ~~~~~r~~~-l~~ag~d~i~iD~~--~------g--------~~~~~~~~i~~ik~~~p~~~vi~g---~---v~t~e~- 302 (505)
T PLN02274 247 ESDKERLEH-LVKAGVDVVVLDSS--Q------G--------DSIYQLEMIKYIKKTYPELDVIGG---N---VVTMYQ- 302 (505)
T ss_pred ccHHHHHHH-HHHcCCCEEEEeCC--C------C--------CcHHHHHHHHHHHHhCCCCcEEEe---c---CCCHHH-
Confidence 344444444 44568888877652 1 1 2344667888888765 4666443 1 123433
Q ss_pred HHHHHHHhhcCCccEEEEc--cC-cccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCC
Q 013789 215 CDFIYKVSSLSPTRHFIIH--SR-KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 291 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vh--gr-t~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad 291 (436)
++.+.++|+|+|.|. +. .+..+...+....... .+..+.++++.. ++|||+-|||.++.|+.++|..||+
T Consensus 303 ----a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~--~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~ 375 (505)
T PLN02274 303 ----AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQAT--AVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGAS 375 (505)
T ss_pred ----HHHHHHcCcCEEEECCCCCccccCccccccCCCccc--HHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 233456999999873 21 1110000000001111 245567777665 8999999999999999999999999
Q ss_pred eeeehHHHHhCCc
Q 013789 292 HVMVGRAAYQNPW 304 (436)
Q Consensus 292 ~VmiGRa~l~~P~ 304 (436)
+||+|+.+...-.
T Consensus 376 ~V~vGs~~~~t~E 388 (505)
T PLN02274 376 TVMMGSFLAGTTE 388 (505)
T ss_pred EEEEchhhccccc
Confidence 9999999987543
No 80
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.18 E-value=7.6e-10 Score=107.56 Aligned_cols=230 Identities=13% Similarity=0.161 Sum_probs=147.7
Q ss_pred cCCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhh---------------------cccchh-----
Q 013789 62 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY---------------------QQGNLD----- 115 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~---------------------~~~~~~----- 115 (436)
+=+-++.|||.+|.--+-+..+.-.++. . |.|.+.+.-+++..--- +++.++
T Consensus 88 ~~g~~f~NPiglAAGfdk~~eaidgL~~-~-gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~r 165 (398)
T KOG1436|consen 88 VLGRKFSNPIGLAAGFDKNAEAIDGLAN-S-GFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQR 165 (398)
T ss_pred HhhhhccCchhhhhccCcchHHHHHHHh-C-CCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHH
Confidence 3456688999999776666667766654 4 58888888776532110 001111
Q ss_pred ----hhhccCCCCCcEEEEEcCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHH
Q 013789 116 ----RFLAFSPEQHPIVLQIGGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 186 (436)
Q Consensus 116 ----~~~~~~~~~~pi~vQL~g~~-----p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv 186 (436)
+.....+...+++|+|.-+. ..++.+-.+...++ .|...||..||+..-.| -++.-..+.+.+
T Consensus 166 l~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~-adylviNvSsPNtpGlr-------~lq~k~~L~~ll 237 (398)
T KOG1436|consen 166 LRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPF-ADYLVINVSSPNTPGLR-------SLQKKSDLRKLL 237 (398)
T ss_pred HHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccc-cceEEEeccCCCCcchh-------hhhhHHHHHHHH
Confidence 12223445567899998654 34555555555454 58999999999964322 223333344444
Q ss_pred HHHhhc-------cCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcc-------------cccCCCCCC
Q 013789 187 SVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-------------LLNGISPAE 246 (436)
Q Consensus 187 ~av~~~-------~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~-------------~~~G~~~~~ 246 (436)
..|..+ ...|+.+|+...+.. ...++ ++.+..+..+|.+++.+.|- ..+|+++
T Consensus 238 ~~v~~a~~~~~~~~~~pvl~kiapDL~~-~el~d----ia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG-- 310 (398)
T KOG1436|consen 238 TKVVQARDKLPLGKKPPVLVKIAPDLSE-KELKD----IALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSG-- 310 (398)
T ss_pred HHHHHHHhccccCCCCceEEEeccchhH-HHHHH----HHHHHHHhCccceeecCceeecCccccccccccccCCCCC--
Confidence 444332 235899999885543 22333 34455678999999986542 1235554
Q ss_pred CCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC-Ccchhhhh
Q 013789 247 NRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHV 310 (436)
Q Consensus 247 ~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~~~~ 310 (436)
..+.+...+.++++.+.. .+||||+.|||.|+.|+.+.++.||+.|||++++... |-+| ..+
T Consensus 311 -~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~-~kI 374 (398)
T KOG1436|consen 311 -PPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAII-EKI 374 (398)
T ss_pred -CccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhH-HHH
Confidence 455666667776665543 4799999999999999999999999999999998655 6553 443
No 81
>PLN02979 glycolate oxidase
Probab=99.16 E-value=2.1e-09 Score=108.49 Aligned_cols=209 Identities=14% Similarity=0.156 Sum_probs=132.2
Q ss_pred cCCeecCCcEEEcCCCC----C--ChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcC-C
Q 013789 62 VARQYLPPWFSVAPMMD----W--TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-S 134 (436)
Q Consensus 62 i~~l~l~n~iilAPMag----v--td~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g-~ 134 (436)
+=+-.+.-||.+||++. . .+....+.+.++| .-.+.+-+.+ . .++.+... .+.+...||.- .
T Consensus 63 llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~ag-i~~~lSt~ss-~-------slEeIa~a--~~~~~wfQLY~~~ 131 (366)
T PLN02979 63 VLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWAT-S-------SVEEVAST--GPGIRFFQLYVYK 131 (366)
T ss_pred ECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcC-CCeeeccCcC-C-------CHHHHHhc--cCCCeEEEEeecC
Confidence 45677888999999973 2 3456666677765 4444333222 1 12222221 23579999984 5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccc----cCCCcc-------ccc----------------------cCChHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVA----GHGCFG-------VSL----------------------MLDPKF 181 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~----r~g~yG-------~~L----------------------l~~~~~ 181 (436)
|.+...+..++++++||+.+-+..-+|..-.. |++ |- ..+ .-++.+
T Consensus 132 Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (366)
T PLN02979 132 NRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNR-FTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTL 210 (366)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccC-CCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCC
Confidence 66777778889999999998887666654111 100 00 000 001112
Q ss_pred HHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH
Q 013789 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (436)
Q Consensus 182 l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l 261 (436)
-=+-++.+++..++||.+|-=. +.++ ++.+.++|+|+|+|.+.-..+ .+ .. +...+.+.++
T Consensus 211 tW~dl~wlr~~~~~PvivKgV~------~~~d-----A~~a~~~Gvd~I~VsnhGGrq-----ld--~~-p~t~~~L~ei 271 (366)
T PLN02979 211 SWKDVQWLQTITKLPILVKGVL------TGED-----ARIAIQAGAAGIIVSNHGARQ-----LD--YV-PATISALEEV 271 (366)
T ss_pred CHHHHHHHHhccCCCEEeecCC------CHHH-----HHHHHhcCCCEEEECCCCcCC-----CC--Cc-hhHHHHHHHH
Confidence 2255777888889999998432 2222 223456999999996543211 11 11 1225666666
Q ss_pred HhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 262 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 262 ~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
++.+ .++|||+.|||.++.|+.+++..|||+|++||.++.
T Consensus 272 ~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 272 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred HHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 6543 369999999999999999999999999999999874
No 82
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.16 E-value=4.8e-10 Score=108.22 Aligned_cols=190 Identities=13% Similarity=0.118 Sum_probs=114.7
Q ss_pred ChHHHHHHHHHcCCCc-EEEeccccchhhhhcccchhhhhccCC-CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEec
Q 013789 80 TDNHYRTLARLISKHA-WLYTEMLAAETIIYQQGNLDRFLAFSP-EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLN 157 (436)
Q Consensus 80 td~~fr~~~~~~Gg~g-l~~temv~~~~l~~~~~~~~~~~~~~~-~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN 157 (436)
....+.....+.| ++ ++++..... .... ..+...+..+.. .+.|+++.=.-.+.+++. +++ +.|++.+.++
T Consensus 28 d~~~~a~~~~~~G-~~~i~i~d~~~~-~~~~-~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~---~~l-~~G~~~v~ig 100 (243)
T cd04731 28 DPVELAKRYNEQG-ADELVFLDITAS-SEGR-ETMLDVVERVAEEVFIPLTVGGGIRSLEDAR---RLL-RAGADKVSIN 100 (243)
T ss_pred CHHHHHHHHHHCC-CCEEEEEcCCcc-cccC-cccHHHHHHHHHhCCCCEEEeCCCCCHHHHH---HHH-HcCCceEEEC
Confidence 3445666666775 55 445554432 1111 112111111111 234555333334455433 332 3688887665
Q ss_pred CCCCCCccccCCCccccccCChHHHHHHHHHHhh-ccCCcEEEEecc---------CCCCCCcHHHHHHHHHHHhhcCCc
Q 013789 158 CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRI---------GVDDHDSYNQLCDFIYKVSSLSPT 227 (436)
Q Consensus 158 ~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~-~~~iPvsvKiR~---------G~~~~~~~~~~~~~la~~~e~~Gv 227 (436)
.+++.+|+.+.++++.+.+ .+-+++++|.+. ||.+... .+..+ +.+.+++.|+
T Consensus 101 ---------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~-~~~~~-~~~~l~~~G~ 163 (243)
T cd04731 101 ---------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG-LDAVE-WAKEVEELGA 163 (243)
T ss_pred ---------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC-CCHHH-HHHHHHHCCC
Confidence 3455788999999988753 344556666443 2322111 11222 2445678999
Q ss_pred cEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCC
Q 013789 228 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 303 (436)
Q Consensus 228 d~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P 303 (436)
|.|++|+++.. |.. ...+|+++.++.+.. ++|||++|||.+++|+.++++ +|||+||+||+++..-
T Consensus 164 d~i~v~~i~~~--g~~-------~g~~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 164 GEILLTSMDRD--GTK-------KGYDLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred CEEEEeccCCC--CCC-------CCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 99999998752 211 112488888887764 899999999999999999998 5999999999987543
No 83
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.13 E-value=2.2e-09 Score=109.02 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=131.7
Q ss_pred cCCeecCCcEEEcCCCC----C--ChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcC-C
Q 013789 62 VARQYLPPWFSVAPMMD----W--TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-S 134 (436)
Q Consensus 62 i~~l~l~n~iilAPMag----v--td~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g-~ 134 (436)
+=+..+.-||.+||++. . .+....+.+.++| ...+.+-+.+. .++.+... .+.|...||.- .
T Consensus 64 ~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~g-i~~~lSt~ss~--------slEeva~~--~~~~~wfQlY~~~ 132 (367)
T PLN02493 64 VLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWATS--------SVEEVAST--GPGIRFFQLYVYK 132 (367)
T ss_pred ECCccccccceechHHHHhhcCCchHHHHHHHHHHcC-CCeeecCcccC--------CHHHHHhc--CCCCcEEEEeecC
Confidence 44667888999999964 2 3445666677765 44554442221 12222221 24578999984 5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCC---Ccc--------c---------------cc------cCChHHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG---CFG--------V---------------SL------MLDPKFV 182 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g---~yG--------~---------------~L------l~~~~~l 182 (436)
|.+...+..++++++||..+-+..-+|..-...++ +|- . .+ .-++.+-
T Consensus 133 Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 212 (367)
T PLN02493 133 NRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLS 212 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCC
Confidence 66767778899999999988887666653111000 000 0 00 0011111
Q ss_pred HHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHH
Q 013789 183 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 262 (436)
Q Consensus 183 ~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~ 262 (436)
=+-++.+++..++||.+|-=. +.++ ++.+.++|+|+|+|.+....+ .+ .. +...+.+.+++
T Consensus 213 W~di~wlr~~~~~PiivKgV~------~~~d-----A~~a~~~Gvd~I~VsnhGGrq-----ld--~~-~~t~~~L~ei~ 273 (367)
T PLN02493 213 WKDVQWLQTITKLPILVKGVL------TGED-----ARIAIQAGAAGIIVSNHGARQ-----LD--YV-PATISALEEVV 273 (367)
T ss_pred HHHHHHHHhccCCCEEeecCC------CHHH-----HHHHHHcCCCEEEECCCCCCC-----CC--Cc-hhHHHHHHHHH
Confidence 244677788889999998332 2322 233456999999996543211 11 11 12256677776
Q ss_pred hcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 263 RDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 263 ~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
+.+ .++|||+.|||.++.|+.+++..||++|+|||.++.
T Consensus 274 ~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 274 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 553 369999999999999999999999999999999874
No 84
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.13 E-value=1.6e-09 Score=103.61 Aligned_cols=145 Identities=21% Similarity=0.301 Sum_probs=98.0
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec-
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 202 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR- 202 (436)
+.|+.+-=+-.+.++. +.+.+.|+|.|= .|+.++.+++.+.++++.+... .+.+++++|
T Consensus 72 ~~pi~~ggGI~~~ed~----~~~~~~Ga~~vv---------------lgs~~l~d~~~~~~~~~~~g~~-~i~~sid~~~ 131 (230)
T TIGR00007 72 GVPVQVGGGIRSLEDV----EKLLDLGVDRVI---------------IGTAAVENPDLVKELLKEYGPE-RIVVSLDARG 131 (230)
T ss_pred CCCEEEeCCcCCHHHH----HHHHHcCCCEEE---------------EChHHhhCHHHHHHHHHHhCCC-cEEEEEEEEC
Confidence 3444443233455543 334457888762 2666677889999998887521 133444444
Q ss_pred -----cCCCCCC--cHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC
Q 013789 203 -----IGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (436)
Q Consensus 203 -----~G~~~~~--~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg 275 (436)
.||.+.. +..++ .+.+++.|++.+++|.++.. |.. ...+++.+.++.+. .++||+++||
T Consensus 132 ~~v~~~g~~~~~~~~~~~~----~~~~~~~g~~~ii~~~~~~~--g~~-------~g~~~~~i~~i~~~-~~ipvia~GG 197 (230)
T TIGR00007 132 GEVAVKGWLEKSEVSLEEL----AKRLEELGLEGIIYTDISRD--GTL-------SGPNFELTKELVKA-VNVPVIASGG 197 (230)
T ss_pred CEEEEcCCcccCCCCHHHH----HHHHHhCCCCEEEEEeecCC--CCc-------CCCCHHHHHHHHHh-CCCCEEEeCC
Confidence 3555422 22233 34456799999999988753 211 01248888888776 4899999999
Q ss_pred CCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 276 INTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 276 I~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
|.+.+|+.+++++|||+||+||+++.+
T Consensus 198 i~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 198 VSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred CCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 999999999999999999999999876
No 85
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.13 E-value=7.6e-10 Score=106.10 Aligned_cols=187 Identities=12% Similarity=0.146 Sum_probs=112.9
Q ss_pred ChHHHHHHHHHcCCCcEEEeccccchhhhh-cccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecC
Q 013789 80 TDNHYRTLARLISKHAWLYTEMLAAETIIY-QQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC 158 (436)
Q Consensus 80 td~~fr~~~~~~Gg~gl~~temv~~~~l~~-~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~ 158 (436)
+...+......+|--.++++..-....... +..-+.++.+ ..+.|+ |+. ..+..+.++.+ +.+.|++.|.++
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~--~~~~pv--~~~-ggi~~~~d~~~-~~~~G~~~vilg- 103 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAE--ECFMPL--TVG-GGIRSLEDAKK-LLSLGADKVSIN- 103 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHH--hCCCCE--EEE-CCCCCHHHHHH-HHHcCCCEEEEC-
Confidence 334444545666533455555433221110 1111222221 124454 554 34444444444 345688988665
Q ss_pred CCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccC------------CCCCCcHHHHHHHHHHHhhcCC
Q 013789 159 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG------------VDDHDSYNQLCDFIYKVSSLSP 226 (436)
Q Consensus 159 gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G------------~~~~~~~~~~~~~la~~~e~~G 226 (436)
++++.+|+++.++++...+. .++++++++.+ |.+... .+..++ ++.+++.|
T Consensus 104 --------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~~~~~~~G 166 (232)
T TIGR03572 104 --------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATG-RDPVEW-AREAEQLG 166 (232)
T ss_pred --------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCC-CCHHHH-HHHHHHcC
Confidence 45568899999998776333 25677776664 211111 122332 45567899
Q ss_pred ccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHH-HcCCCeeeehHHHH
Q 013789 227 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAY 300 (436)
Q Consensus 227 vd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l-~~Gad~VmiGRa~l 300 (436)
+|.|++|+++.. |.. ...+++.+.++.+.. ++|||++|||.+.+|+.+++ ++|||+|++|+++.
T Consensus 167 ~d~i~i~~i~~~--g~~-------~g~~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 167 AGEILLNSIDRD--GTM-------KGYDLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred CCEEEEeCCCcc--CCc-------CCCCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 999999997652 211 112488888888765 89999999999999999955 59999999999874
No 86
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.13 E-value=5.3e-10 Score=107.02 Aligned_cols=145 Identities=21% Similarity=0.326 Sum_probs=98.7
Q ss_pred EEEEEcCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh-ccCCcEEEE---
Q 013789 127 IVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK--- 200 (436)
Q Consensus 127 i~vQL~g~--~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~-~~~iPvsvK--- 200 (436)
+-+|+.|. ++++ +.+++ +.|+|.|- .|+.++.+|+++.++.+.+.+ .+-+++.+|
T Consensus 74 ~pv~~~GgI~~~e~---~~~~~-~~Gad~vv---------------igs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~ 134 (234)
T cd04732 74 IPVQVGGGIRSLED---IERLL-DLGVSRVI---------------IGTAAVKNPELVKELLKEYGGERIVVGLDAKDGK 134 (234)
T ss_pred CCEEEeCCcCCHHH---HHHHH-HcCCCEEE---------------ECchHHhChHHHHHHHHHcCCceEEEEEEeeCCE
Confidence 44666653 4443 33333 57888862 366667889999999888654 222223322
Q ss_pred -eccCCCCC--CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC
Q 013789 201 -CRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (436)
Q Consensus 201 -iR~G~~~~--~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~ 277 (436)
++.||... .+..++ .+.+++.|++.+++|+++.. |.. ...+++.+.++++.. ++||+++|||.
T Consensus 135 ~~~~~~~~~~~~~~~~~----~~~~~~~ga~~iii~~~~~~--g~~-------~g~~~~~i~~i~~~~-~ipvi~~GGi~ 200 (234)
T cd04732 135 VATKGWLETSEVSLEEL----AKRFEELGVKAIIYTDISRD--GTL-------SGPNFELYKELAAAT-GIPVIASGGVS 200 (234)
T ss_pred EEECCCeeecCCCHHHH----HHHHHHcCCCEEEEEeecCC--Ccc-------CCCCHHHHHHHHHhc-CCCEEEecCCC
Confidence 23345321 223333 34456799999999988652 211 112388888888765 89999999999
Q ss_pred CHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 278 TVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 278 s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
+.+|+.++++.|||+||+||+++.++.
T Consensus 201 ~~~di~~~~~~Ga~gv~vg~~~~~~~~ 227 (234)
T cd04732 201 SLDDIKALKELGVAGVIVGKALYEGKI 227 (234)
T ss_pred CHHHHHHHHHCCCCEEEEeHHHHcCCC
Confidence 999999999999999999999999984
No 87
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.13 E-value=9.3e-09 Score=102.21 Aligned_cols=196 Identities=16% Similarity=0.093 Sum_probs=125.9
Q ss_pred CCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhh-ccCC-CCCcEEEEEcCCCHHHHH
Q 013789 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL-AFSP-EQHPIVLQIGGSNLDNLA 140 (436)
Q Consensus 63 ~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~-~~~~-~~~pi~vQL~g~~p~~~~ 140 (436)
.++.+.-||+-|.|.++++.++.....++|+.+.+.= +.+.+.. ..+. ...+ ...-+.+-+ |-.++++.
T Consensus 40 ~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk-~~~~e~~-------~~~v~~~~~~~~~~~~vsv-G~~~~d~e 110 (343)
T TIGR01305 40 KQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHK-HYSVDEW-------KAFATNSSPDCLQNVAVSS-GSSDNDLE 110 (343)
T ss_pred CceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEee-CCCHHHH-------HHHHHhhcccccceEEEEe-ccCHHHHH
Confidence 4667888999999999999999999999987765422 1222211 1111 1111 223344433 55778888
Q ss_pred HHHHHHHH-CCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHH
Q 013789 141 KATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (436)
Q Consensus 141 ~aA~~~~~-~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la 219 (436)
++..+++. .|+|.|-|.... | ..+.+.+.++.+++...-+..+|=. + .+.+...
T Consensus 111 r~~~L~~a~~~~d~iviD~Ah--------G--------hs~~~i~~ik~ir~~~p~~~viaGN--V---~T~e~a~---- 165 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVAN--------G--------YSEHFVEFVKLVREAFPEHTIMAGN--V---VTGEMVE---- 165 (343)
T ss_pred HHHHHHhcCCCCCEEEEECCC--------C--------cHHHHHHHHHHHHhhCCCCeEEEec--c---cCHHHHH----
Confidence 88888765 368988776321 1 3466889999999876444434321 2 2333322
Q ss_pred HHhhcCCccEEEEc------cCcccccCCCCCCCCCCCCccHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHHHcCCC
Q 013789 220 KVSSLSPTRHFIIH------SRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAH 291 (436)
Q Consensus 220 ~~~e~~Gvd~I~vh------grt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~--~~iPVIanGgI~s~~da~~~l~~Gad 291 (436)
.+.++|+|+|.|. ..|+...|.. .+ .+..+.++++.. .++|||+-|||....|+.+++..|||
T Consensus 166 -~Li~aGAD~ikVgiGpGSicttR~~~Gvg------~p--qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd 236 (343)
T TIGR01305 166 -ELILSGADIVKVGIGPGSVCTTRTKTGVG------YP--QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGAD 236 (343)
T ss_pred -HHHHcCCCEEEEcccCCCcccCceeCCCC------cC--HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCC
Confidence 2346999999875 1122222322 11 256666665433 27999999999999999999999999
Q ss_pred eeeehHHHHh
Q 013789 292 HVMVGRAAYQ 301 (436)
Q Consensus 292 ~VmiGRa~l~ 301 (436)
+||+|.-+-+
T Consensus 237 ~VMlG~llAG 246 (343)
T TIGR01305 237 FVMLGGMFAG 246 (343)
T ss_pred EEEECHhhhC
Confidence 9999954433
No 88
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=99.11 E-value=5.3e-10 Score=112.87 Aligned_cols=172 Identities=14% Similarity=0.118 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC---------CCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEeccC-
Q 013789 137 DNLAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG- 204 (436)
Q Consensus 137 ~~~~~aA~~~~~~G~d~IdLN~g---------cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR~G- 204 (436)
|.+..||+.+.++|||+||||-. .|. .+.|+|+||++++++.+++.|++.+|++.++ ...-+..+.+
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~-~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPT-TNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCC-CCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 56777888888999999999965 455 4678999999999999999999999999763 2233333322
Q ss_pred CCC-CCcHHHHHHHHHHHhhcCCccEEEEccCcccc-cCCCCCCCCCCCCc-c-HHHHHHHHhcCCCcEEEEeCCCCCHH
Q 013789 205 VDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL-NGISPAENRTIPPL-K-YEYYYALLRDFPDLTFTLNGGINTVD 280 (436)
Q Consensus 205 ~~~-~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~-~G~~~~~~~~i~~~-~-~~~v~~l~~~~~~iPVIanGgI~s~~ 280 (436)
..+ ..+.++.. .+..+.+..|+|.+-+.|++... -+......+.+... . .+....+...+...=|-++|+..+.+
T Consensus 253 fq~~~~t~d~~~-~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~ 331 (400)
T KOG0134|consen 253 FQDIGITIDDAI-KMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTRE 331 (400)
T ss_pred hhhccccccchH-HHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHH
Confidence 000 01122211 12445677889966665544210 00000000001110 0 22223333344233345778999999
Q ss_pred HHHHHHHcC-CCeeeehHHHHhCCcchhhhh
Q 013789 281 EVNAALRKG-AHHVMVGRAAYQNPWYTLGHV 310 (436)
Q Consensus 281 da~~~l~~G-ad~VmiGRa~l~~P~lf~~~~ 310 (436)
.+.++++.| .|+|..||.++.||+|+.+.+
T Consensus 332 ~~~eav~~~~T~~ig~GR~f~anPDLp~rl~ 362 (400)
T KOG0134|consen 332 AMVEAVKSGRTDLIGYGRPFLANPDLPKRLL 362 (400)
T ss_pred HHHHHHhcCCceeEEecchhccCCchhHHHH
Confidence 999999955 669999999999999986543
No 89
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.09 E-value=5e-10 Score=107.22 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=86.1
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEec----cCCCCC--CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCC
Q 013789 171 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR----IGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244 (436)
Q Consensus 171 yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR----~G~~~~--~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~ 244 (436)
.|++++.+++.+.++.+...+.+-+++.+|.+ .||... .+..++ .+.+++.|++.|++|++++.....
T Consensus 102 lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~----~~~~~~~g~~~ii~~~~~~~g~~~-- 175 (233)
T PRK00748 102 IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDL----AKRFEDAGVKAIIYTDISRDGTLS-- 175 (233)
T ss_pred ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHH----HHHHHhcCCCEEEEeeecCcCCcC--
Confidence 37777788999999998875554444554421 355432 223333 445678999999999887532211
Q ss_pred CCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcC-CCeeeehHHHHhC
Q 013789 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQN 302 (436)
Q Consensus 245 ~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~G-ad~VmiGRa~l~~ 302 (436)
+ .+|+.+.++.+.. ++|||++|||.|.+|+.++++.| ||+||+||+++..
T Consensus 176 ------G-~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 176 ------G-PNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred ------C-CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 1 2488888888765 79999999999999999999966 9999999999865
No 90
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.05 E-value=3.9e-09 Score=101.68 Aligned_cols=147 Identities=20% Similarity=0.283 Sum_probs=99.2
Q ss_pred EEEEEcC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh-ccCCcEEEE---
Q 013789 127 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK--- 200 (436)
Q Consensus 127 i~vQL~g--~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~-~~~iPvsvK--- 200 (436)
+-+|+.| ++.++. +.+.++|+|.|-+ |+.++.+|+.+.++++.+.+ .+-+.+++|
T Consensus 77 ~~l~v~GGi~~~~~~----~~~~~~Ga~~v~i---------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~ 137 (241)
T PRK13585 77 VPVQLGGGIRSAEDA----ASLLDLGVDRVIL---------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGE 137 (241)
T ss_pred CcEEEcCCcCCHHHH----HHHHHcCCCEEEE---------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCE
Confidence 4455643 344433 2333579998744 55566788888888887632 211122222
Q ss_pred e-ccCCCCCC--cHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC
Q 013789 201 C-RIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (436)
Q Consensus 201 i-R~G~~~~~--~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~ 277 (436)
+ -.||.... +..++ ++.+++.|++.|++|+++.. |.. ...+++.+.++.+.. ++||+++|||.
T Consensus 138 v~~~g~~~~~~~~~~~~----~~~~~~~G~~~i~~~~~~~~--g~~-------~g~~~~~i~~i~~~~-~iPvia~GGI~ 203 (241)
T PRK13585 138 VVIKGWTEKTGYTPVEA----AKRFEELGAGSILFTNVDVE--GLL-------EGVNTEPVKELVDSV-DIPVIASGGVT 203 (241)
T ss_pred EEECCCcccCCCCHHHH----HHHHHHcCCCEEEEEeecCC--CCc-------CCCCHHHHHHHHHhC-CCCEEEeCCCC
Confidence 1 13665432 23333 34456799999999988642 211 123488888888875 89999999999
Q ss_pred CHHHHHHHHHcCCCeeeehHHHHhCCcch
Q 013789 278 TVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (436)
Q Consensus 278 s~~da~~~l~~Gad~VmiGRa~l~~P~lf 306 (436)
+.+|+.+++++||++|++|++++.+|..+
T Consensus 204 ~~~di~~~~~~Ga~gv~vgsa~~~~~~~~ 232 (241)
T PRK13585 204 TLDDLRALKEAGAAGVVVGSALYKGKFTL 232 (241)
T ss_pred CHHHHHHHHHcCCCEEEEEHHHhcCCcCH
Confidence 99999998889999999999999999864
No 91
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.03 E-value=1.4e-08 Score=101.00 Aligned_cols=192 Identities=12% Similarity=0.085 Sum_probs=123.5
Q ss_pred cCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhh-ccCCC-CCcEEEEEcCCCHHHHHHHHH
Q 013789 67 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL-AFSPE-QHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 67 l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~-~~~~~-~~pi~vQL~g~~p~~~~~aA~ 144 (436)
+.-||+-|+|.++++..+..+..+.|+.+.+. -+.+.+.- ..+. ..+++ ...+.+-+ |-.++++.++.+
T Consensus 45 ~giPii~AnMdTV~~~~mA~~la~~g~~~~iH-k~~~~e~~-------~~fv~~~~~~~~~~~~vav-G~~~~d~er~~~ 115 (346)
T PRK05096 45 SGVPIIAANMDTVGTFEMAKALASFDILTAVH-KHYSVEEW-------AAFVNNSSADVLKHVMVST-GTSDADFEKTKQ 115 (346)
T ss_pred cCCceEecCCCccccHHHHHHHHHCCCeEEEe-cCCCHHHH-------HHHHHhccccccceEEEEe-cCCHHHHHHHHH
Confidence 44799999999999999999999998765541 11122211 1111 12211 22344433 556788989988
Q ss_pred HHHH-CCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHh
Q 013789 145 LANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (436)
Q Consensus 145 ~~~~-~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~ 222 (436)
+++. .|+|.|-|.... | ..+.+.++++.+++.+ +++|.+ -++ .+.+.. +.+
T Consensus 116 L~~~~~g~D~iviD~Ah--------G--------hs~~~i~~ik~ik~~~P~~~vIa---GNV---~T~e~a-----~~L 168 (346)
T PRK05096 116 ILALSPALNFICIDVAN--------G--------YSEHFVQFVAKAREAWPDKTICA---GNV---VTGEMV-----EEL 168 (346)
T ss_pred HHhcCCCCCEEEEECCC--------C--------cHHHHHHHHHHHHHhCCCCcEEE---ecc---cCHHHH-----HHH
Confidence 8874 799988776421 2 3467889999999876 455533 222 233322 223
Q ss_pred hcCCccEEEEc---c---CcccccCCCCCCCCCCCCccHHHHHHH---HhcCCCcEEEEeCCCCCHHHHHHHHHcCCCee
Q 013789 223 SLSPTRHFIIH---S---RKALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (436)
Q Consensus 223 e~~Gvd~I~vh---g---rt~~~~G~~~~~~~~i~~~~~~~v~~l---~~~~~~iPVIanGgI~s~~da~~~l~~Gad~V 293 (436)
.++|+|+|.|- | .|+...|.+- | -+..+.++ ++.. ++|||+-|||.+.-|+.+++..|||+|
T Consensus 169 i~aGAD~vKVGIGpGSiCtTr~vtGvG~------P--QltAV~~~a~~a~~~-gvpiIADGGi~~sGDI~KAlaaGAd~V 239 (346)
T PRK05096 169 ILSGADIVKVGIGPGSVCTTRVKTGVGY------P--QLSAVIECADAAHGL-GGQIVSDGGCTVPGDVAKAFGGGADFV 239 (346)
T ss_pred HHcCCCEEEEcccCCccccCccccccCh------h--HHHHHHHHHHHHHHc-CCCEEecCCcccccHHHHHHHcCCCEE
Confidence 46999999872 1 1222223221 1 14444443 3333 899999999999999999999999999
Q ss_pred eehHHHHhCC
Q 013789 294 MVGRAAYQNP 303 (436)
Q Consensus 294 miGRa~l~~P 303 (436)
|+|+-|-+.-
T Consensus 240 MlGsllAGt~ 249 (346)
T PRK05096 240 MLGGMLAGHE 249 (346)
T ss_pred EeChhhcCcc
Confidence 9999887654
No 92
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.01 E-value=5.8e-09 Score=101.43 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=96.8
Q ss_pred EEEcC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh-----ccC-------
Q 013789 129 LQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-----NTN------- 194 (436)
Q Consensus 129 vQL~g--~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~-----~~~------- 194 (436)
+|+.| .+.+++.+ ++ +.|++.+.++ +.++.+|+++.++.+..-+ .++
T Consensus 77 v~~~GGi~s~~~~~~---~l-~~Ga~~Viig---------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~ 137 (253)
T PRK02083 77 LTVGGGIRSVEDARR---LL-RAGADKVSIN---------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEP 137 (253)
T ss_pred EEeeCCCCCHHHHHH---HH-HcCCCEEEEC---------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCC
Confidence 45544 34554433 33 3688887554 4555789999999888621 223
Q ss_pred CcEEEEeccCCCCCC-cHHHHHHHHHHHhhcCCccEEEEcc--CcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEE
Q 013789 195 VPVSVKCRIGVDDHD-SYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (436)
Q Consensus 195 iPvsvKiR~G~~~~~-~~~~~~~~la~~~e~~Gvd~I~vhg--rt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVI 271 (436)
-|++||+|.+++... +..+. .+.+++.|++.+++|+ |....+|. +|+++.++.+.. ++|||
T Consensus 138 ~~~~v~~~~~~~~~~~~~~~~----~~~~~~~g~~~ii~~~i~~~g~~~g~-----------d~~~i~~~~~~~-~ipvi 201 (253)
T PRK02083 138 GRWEVYTHGGRKPTGLDAVEW----AKEVEELGAGEILLTSMDRDGTKNGY-----------DLELTRAVSDAV-NVPVI 201 (253)
T ss_pred CCEEEEEcCCceecCCCHHHH----HHHHHHcCCCEEEEcCCcCCCCCCCc-----------CHHHHHHHHhhC-CCCEE
Confidence 467999998765422 22222 2345678999999976 43222221 388888887765 89999
Q ss_pred EeCCCCCHHHHHHHHH-cCCCeeeehHHHHhC
Q 013789 272 LNGGINTVDEVNAALR-KGAHHVMVGRAAYQN 302 (436)
Q Consensus 272 anGgI~s~~da~~~l~-~Gad~VmiGRa~l~~ 302 (436)
++|||.|.+|+.++++ +|||+|++|++++..
T Consensus 202 a~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 202 ASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred EECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 9999999999999998 699999999998754
No 93
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.01 E-value=6.9e-09 Score=100.67 Aligned_cols=144 Identities=20% Similarity=0.287 Sum_probs=99.8
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
+-|++++++|+-.+------|.. .|+.+ |-+-+++|+.+.+|.++| ++||.-|+|.|. + .+ ++
T Consensus 21 eqa~iae~aga~avm~le~~p~d--~r~~g-gv~R~~~p~~I~~I~~~V----~iPVig~~kigh-----~---~E--a~ 83 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPAD--IRASG-GVARMSDPKMIKEIMDAV----SIPVMAKVRIGH-----F---VE--AQ 83 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchh--hHhcC-CeeecCCHHHHHHHHHhC----CCCEEEEeeccH-----H---HH--HH
Confidence 45788999998766554456664 35556 889999999888777654 899999999874 1 12 33
Q ss_pred HhhcCCccEEEEccCcc-----------------------------------------cccCCCC---------------
Q 013789 221 VSSLSPTRHFIIHSRKA-----------------------------------------LLNGISP--------------- 244 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~-----------------------------------------~~~G~~~--------------- 244 (436)
.+++.|+|.|.-+-|.. ...|+..
T Consensus 84 ~L~~~GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~ 163 (287)
T TIGR00343 84 ILEALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEI 163 (287)
T ss_pred HHHHcCCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHH
Confidence 44556666665433210 0001111
Q ss_pred -------CC------CCCCCCccHHHHHHHHhcCCCcEEE--EeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 245 -------AE------NRTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 245 -------~~------~~~i~~~~~~~v~~l~~~~~~iPVI--anGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
.+ ...+ ...++++.++++.. ++||+ +.|||.+++++..++++|||+|.+|+++...+
T Consensus 164 ~~~~~~~~~~~~~~~a~~~-~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~ 235 (287)
T TIGR00343 164 RQIQNMLEEEDLAAVAKEL-RVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 235 (287)
T ss_pred HHHhcccchhHHhhhhccc-CCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 00 0011 23588888888765 89998 99999999999999999999999999998643
No 94
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.98 E-value=4.7e-08 Score=103.74 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHH
Q 013789 180 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (436)
Q Consensus 180 ~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v 258 (436)
.-+.+.++.+++.. ++||.++ +..+.++.. .+.++|+|+|.+-+......+. ..-...+...++.+
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g------~v~t~e~a~-----~l~~aGad~i~vg~g~gs~~~~--r~~~~~g~p~~~~~ 320 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAG------NVATAEAAR-----ALIEAGADAVKVGIGPGSICTT--RIVAGVGVPQITAI 320 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEe------ccCCHHHHH-----HHHHcCCCEEEECCCCCccccc--eeecCCCcCHHHHH
Confidence 34667777887776 7887772 123444332 3346999999873211000000 00011122236666
Q ss_pred HHHHhcC--CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 259 YALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 259 ~~l~~~~--~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
.++.+.. .++|||+.|||.++.|+.++++.|||+||+|+.+-+.
T Consensus 321 ~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~ 366 (486)
T PRK05567 321 ADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGT 366 (486)
T ss_pred HHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccc
Confidence 6665432 3799999999999999999999999999999988654
No 95
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.95 E-value=4.6e-08 Score=102.84 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHH
Q 013789 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~ 214 (436)
++.+.++.. +.++|+|.|.++..-. +.+.+.+.++.+++.+ ++||.++- ..+.++.
T Consensus 223 ~~~~~r~~~-L~~aG~d~I~vd~a~g----------------~~~~~~~~i~~i~~~~~~~~vi~G~------v~t~~~a 279 (450)
T TIGR01302 223 EFDKERAEA-LVKAGVDVIVIDSSHG----------------HSIYVIDSIKEIKKTYPDLDIIAGN------VATAEQA 279 (450)
T ss_pred hhHHHHHHH-HHHhCCCEEEEECCCC----------------cHhHHHHHHHHHHHhCCCCCEEEEe------CCCHHHH
Confidence 355555554 4567999999876432 1235778888888874 78887732 1234332
Q ss_pred HHHHHHHhhcCCccEEEEc-cC-----cccccCCCCCCCCCCCCccHHHHHHH---HhcCCCcEEEEeCCCCCHHHHHHH
Q 013789 215 CDFIYKVSSLSPTRHFIIH-SR-----KALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAA 285 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vh-gr-----t~~~~G~~~~~~~~i~~~~~~~v~~l---~~~~~~iPVIanGgI~s~~da~~~ 285 (436)
+.+.++|+|+|.|. |. |....|. +...+..+.++ .+.. ++|||+.|||.++.|+.++
T Consensus 280 -----~~l~~aGad~i~vg~g~G~~~~t~~~~~~--------g~p~~~~i~~~~~~~~~~-~vpviadGGi~~~~di~kA 345 (450)
T TIGR01302 280 -----KALIDAGADGLRVGIGPGSICTTRIVAGV--------GVPQITAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKA 345 (450)
T ss_pred -----HHHHHhCCCEEEECCCCCcCCccceecCC--------CccHHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHH
Confidence 23346999999873 11 1111111 11124444444 3333 7999999999999999999
Q ss_pred HHcCCCeeeehHHHHhCCcch
Q 013789 286 LRKGAHHVMVGRAAYQNPWYT 306 (436)
Q Consensus 286 l~~Gad~VmiGRa~l~~P~lf 306 (436)
++.||++||+|+.+.+..+-.
T Consensus 346 la~GA~~V~~G~~~a~~~e~p 366 (450)
T TIGR01302 346 LAAGADAVMLGSLLAGTTESP 366 (450)
T ss_pred HHcCCCEEEECchhhcCCcCC
Confidence 999999999999998877654
No 96
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.87 E-value=2.5e-07 Score=97.52 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcc---cccCCCCCCCCCCCCc
Q 013789 178 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPL 253 (436)
Q Consensus 178 ~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~---~~~G~~~~~~~~i~~~ 253 (436)
+++.+.++++.+++.+ ++||.+ | ...+.+.. +.+.++|+|+|.|-++.. ...+..+. .+++
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~----g--~~~t~~~~-----~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~---g~~~- 313 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVA----G--NVVSAEGV-----RDLLEAGANIIKVGVGPGAMCTTRMMTGV---GRPQ- 313 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEE----e--ccCCHHHH-----HHHHHhCCCEEEECCcCCccccCccccCC---CCch-
Confidence 3467888888888865 788766 2 12344433 234469999999854421 11121111 1122
Q ss_pred cHHHHHHH---HhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 254 KYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 254 ~~~~v~~l---~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
...+.++ .+.. ++|||+.|||.++.|+.+++..||++||+|+-+-+.
T Consensus 314 -~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~ 363 (475)
T TIGR01303 314 -FSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGT 363 (475)
T ss_pred -HHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhccc
Confidence 2333333 2334 899999999999999999999999999999987654
No 97
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.82 E-value=2.9e-07 Score=97.24 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEc---cCcccccCCCCCCCCCCCCccH
Q 013789 180 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---SRKALLNGISPAENRTIPPLKY 255 (436)
Q Consensus 180 ~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vh---grt~~~~G~~~~~~~~i~~~~~ 255 (436)
..+.++++.+++.+ +++|.+ | +..+.+.. +.+.++|+|+|-|- |.-+...+..+. +...+
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~a----g--nv~t~~~a-----~~l~~aGad~v~vgig~gsictt~~~~~~-----~~p~~ 316 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVA----G--NVVTAEGT-----RDLVEAGADIVKVGVGPGAMCTTRMMTGV-----GRPQF 316 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEe----e--ccCCHHHH-----HHHHHcCCCEEEECccCCcccccccccCC-----chhHH
Confidence 44666666666654 444432 1 22344433 23346999999862 111111122111 11237
Q ss_pred HHHHHHHhc--CCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 256 EYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 256 ~~v~~l~~~--~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
..+.++.+. ..++|||+-|||.++.|+.+++..|||+||+|+.|.+...
T Consensus 317 ~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~E 367 (479)
T PRK07807 317 SAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYE 367 (479)
T ss_pred HHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCcc
Confidence 777776652 1279999999999999999999999999999999988764
No 98
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.79 E-value=8.7e-08 Score=91.25 Aligned_cols=149 Identities=19% Similarity=0.316 Sum_probs=103.3
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec--
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR-- 202 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR-- 202 (436)
.++-||++|.-.+ . +.++.+-++|++.+-+ |+.-..+|+++.++++..-..+-+-+.+|.-
T Consensus 74 ~~~~vQvGGGIRs-~-~~v~~ll~~G~~rVii---------------Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~v 136 (241)
T COG0106 74 TDVPVQVGGGIRS-L-EDVEALLDAGVARVII---------------GTAAVKNPDLVKELCEEYGDRIVVALDARDGKV 136 (241)
T ss_pred CCCCEEeeCCcCC-H-HHHHHHHHCCCCEEEE---------------ecceecCHHHHHHHHHHcCCcEEEEEEccCCcc
Confidence 4678999986443 2 3344455588876533 4455689999999998865332222333321
Q ss_pred --cCCCCCCcHHHHHHHHHHHhhcCCccEEEEccC--cccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCC
Q 013789 203 --IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 278 (436)
Q Consensus 203 --~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgr--t~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s 278 (436)
-||.+.... ++.+ +++.+++.|+..|.+|.- ...++| .+++.+.++.+.+ ++|||++|||.|
T Consensus 137 av~GW~e~s~~-~~~~-l~~~~~~~g~~~ii~TdI~~DGtl~G-----------~n~~l~~~l~~~~-~ipviaSGGv~s 202 (241)
T COG0106 137 AVSGWQEDSGV-ELEE-LAKRLEEVGLAHILYTDISRDGTLSG-----------PNVDLVKELAEAV-DIPVIASGGVSS 202 (241)
T ss_pred ccccccccccC-CHHH-HHHHHHhcCCCeEEEEecccccccCC-----------CCHHHHHHHHHHh-CcCEEEecCcCC
Confidence 267664321 2233 244567799999998854 333333 2388888998887 999999999999
Q ss_pred HHHHHHHHHc-CCCeeeehHHHHhCCc
Q 013789 279 VDEVNAALRK-GAHHVMVGRAAYQNPW 304 (436)
Q Consensus 279 ~~da~~~l~~-Gad~VmiGRa~l~~P~ 304 (436)
.+|+.++.++ |+++|.+|||++..-.
T Consensus 203 ~~Di~~l~~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 203 LDDIKALKELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred HHHHHHHHhcCCCcEEEEehHHhcCCC
Confidence 9999999998 8999999999998654
No 99
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.78 E-value=4.1e-08 Score=95.57 Aligned_cols=184 Identities=13% Similarity=0.153 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCC-CCCcEEEEEcC--CCHHHHHHHHHHHHHCCCCEEEecCC
Q 013789 83 HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP-EQHPIVLQIGG--SNLDNLAKATELANAYNYDEINLNCG 159 (436)
Q Consensus 83 ~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~-~~~pi~vQL~g--~~p~~~~~aA~~~~~~G~d~IdLN~g 159 (436)
.+.......|.-.+.++-....... ...+.+-+.++.. .+ +-+|+.| .+.++..+ +...|++.+-+
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~~~--~~~n~~~i~~i~~~~~--~pv~~~GGi~s~~d~~~----~~~~Ga~~viv--- 102 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASSEG--RTTMIDVVERTAETVF--IPLTVGGGIKSIEDVDK----LLRAGADKVSI--- 102 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCccccc--ChhhHHHHHHHHHhcC--CCEEEECCCCCHHHHHH----HHHcCCCEEEE---
Confidence 5555556666444556665544211 1111111111111 23 3455554 44554333 23368887644
Q ss_pred CCCCccccCCCccccccCChHHHHHHHHHHh-hc--cCC-----cE------EEEeccCCCCCCcHHHHHHHHHHHhhcC
Q 013789 160 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-AN--TNV-----PV------SVKCRIGVDDHDSYNQLCDFIYKVSSLS 225 (436)
Q Consensus 160 cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~-~~--~~i-----Pv------svKiR~G~~~~~~~~~~~~~la~~~e~~ 225 (436)
|.+++.+|+++.++.+..- +. +.+ ++ .||+|.+++... .+..++ .+.+++.
T Consensus 103 ------------gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~--~~~~~~-~~~l~~~ 167 (254)
T TIGR00735 103 ------------NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTG--LDAVEW-AKEVEKL 167 (254)
T ss_pred ------------ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCC--CCHHHH-HHHHHHc
Confidence 4555678999999887663 22 122 21 478887655322 122232 4456789
Q ss_pred CccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcC-CCeeeehHHHHhC
Q 013789 226 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQN 302 (436)
Q Consensus 226 Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~G-ad~VmiGRa~l~~ 302 (436)
|++.|++|+++.. |.. ...+++++.++++.. ++|||++|||.+++|+.++++.| ||+|++||+++..
T Consensus 168 G~~~iivt~i~~~--g~~-------~g~~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 168 GAGEILLTSMDKD--GTK-------SGYDLELTKAVSEAV-KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred CCCEEEEeCcCcc--cCC-------CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 9999999998752 321 122488888887765 89999999999999999999955 9999999998643
No 100
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.75 E-value=1.7e-07 Score=90.99 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=96.1
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
+-|++++++|+-.+-.----|+.. |+.+ |-+-++.|+.+.+|.++ +++||.-+++.|+ +.+ ++
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~--~~~~-~v~R~~~~~~I~~Ik~~----V~iPVIGi~K~~~-----~~E-----a~ 81 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADI--RAAG-GVARMADPKMIKEIMDA----VSIPVMAKVRIGH-----FVE-----AQ 81 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhh--hhcC-CeeecCCHHHHHHHHHh----CCCCeEEeeehhH-----HHH-----HH
Confidence 457889999987766555566643 4444 78888888877766554 5899998888763 111 12
Q ss_pred HhhcCCccEEEEccC-----------------------------------------------ccc---------------
Q 013789 221 VSSLSPTRHFIIHSR-----------------------------------------------KAL--------------- 238 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgr-----------------------------------------------t~~--------------- 238 (436)
.+.++|+|.|..+.| |..
T Consensus 82 ~L~eaGvDiIDaT~r~rP~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i 161 (283)
T cd04727 82 ILEALGVDMIDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEI 161 (283)
T ss_pred HHHHcCCCEEeccCCCCcHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHH
Confidence 223344444443332 211
Q ss_pred --ccCCCCCC---CCCCCCccHHHHHHHHhcCCCcEEE--EeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 239 --LNGISPAE---NRTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 239 --~~G~~~~~---~~~i~~~~~~~v~~l~~~~~~iPVI--anGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
..|+.+.. ........|+++.++++.. ++||| +.|||.+++++.+++++|||+|++|++++..+.
T Consensus 162 ~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~d 233 (283)
T cd04727 162 RKLQSMSEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSEN 233 (283)
T ss_pred HHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCC
Confidence 01111100 0111234689999988875 79997 999999999999999999999999999986544
No 101
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.75 E-value=7.9e-09 Score=101.58 Aligned_cols=157 Identities=15% Similarity=0.223 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~ 214 (436)
+-..+.+.+...+++|.|..|+|+.||...-. +| +|.++-..|.++.|+...|+....+|+.-|+.+++++....
T Consensus 216 nk~~w~el~d~~eqag~d~lE~nlscphgm~e-rg-mgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~rev--- 290 (471)
T KOG1799|consen 216 NKKCWMELNDSGEQAGQDDLETNLSCPHGMCE-RG-MGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITDKREV--- 290 (471)
T ss_pred hhhhHHHHhhhHHhhcccchhccCCCCCCCcc-cc-ccceeccChhhhHHHhhhhhhccccccccccCCCccccccc---
Confidence 34566788888999999999999999998644 34 59999999999999999999989999999999988775432
Q ss_pred HHHHHHHhhcCCccEEEE---------------------ccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe
Q 013789 215 CDFIYKVSSLSPTRHFII---------------------HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 273 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~v---------------------hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan 273 (436)
++.....|+..|+. .||+ .++|.+. ..+.|..++.+-.+++.....|+.+.
T Consensus 291 ----ar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~s-T~GG~S~---~AvRPIAl~~V~~IA~~m~~F~l~~~ 362 (471)
T KOG1799|consen 291 ----ARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYS-TPGGYSY---KAVRPIALAKVMNIAKMMKEFSLSGI 362 (471)
T ss_pred ----chhcCcccccchhhHhHHHHHhcccccccCCCccccccc-CCCCccc---cccchHHHHHHHHHHHHhhcCccccc
Confidence 23334455554432 1221 2334443 45777777777777766557789999
Q ss_pred CCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 274 GGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 274 GgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
|||.++.|+...+.+|+..||+.+|.+..-+
T Consensus 363 GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~ 393 (471)
T KOG1799|consen 363 GGVETGYDAAEFILLGSNTVQVCTGVMMHGY 393 (471)
T ss_pred cCcccccchhhHhhcCCcHhhhhhHHHhcCc
Confidence 9999999999999999999999999987765
No 102
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.75 E-value=7.4e-08 Score=97.84 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE--ccCcccccCCCCCCCCCCCCcc
Q 013789 177 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLK 254 (436)
Q Consensus 177 ~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v--hgrt~~~~G~~~~~~~~i~~~~ 254 (436)
.+|-.+.|.+..+++....|+.+| |+.. .+++. -+-..|+++|.+ ||......| +++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~k---GV~~---~~D~~-----~a~~tg~~~I~vsnhggrqlD~g--------~st-- 259 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLK---GILA---PEDAA-----GAGGTGADGIEVSNHGGRQLDWG--------IST-- 259 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHh---CCCC---HHHHH-----hhccCCceEEEEEcCCCccccCC--------CCh--
Confidence 344445555555555555555433 3332 12221 223588999998 444332222 233
Q ss_pred HHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 255 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 255 ~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
.+.+.++++.+. +++||+.|||+++.|+.+++..||++|++||++|.
T Consensus 260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHH
Confidence 677888888776 49999999999999999999999999999999875
No 103
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.73 E-value=1.6e-07 Score=86.37 Aligned_cols=127 Identities=19% Similarity=0.178 Sum_probs=83.0
Q ss_pred HHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHh
Q 013789 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (436)
Q Consensus 143 A~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~ 222 (436)
++.+.++|+|.|-+.+- .. .+|+-+.++++.+++.. ..+.. |..+++|. +.+
T Consensus 57 v~~l~~aGadIIAlDaT---------~R------~Rp~~l~~li~~i~~~~-~l~MA-------Dist~ee~-----~~A 108 (192)
T PF04131_consen 57 VDALAEAGADIIALDAT---------DR------PRPETLEELIREIKEKY-QLVMA-------DISTLEEA-----INA 108 (192)
T ss_dssp HHHHHHCT-SEEEEE-S---------SS------S-SS-HHHHHHHHHHCT-SEEEE-------E-SSHHHH-----HHH
T ss_pred HHHHHHcCCCEEEEecC---------CC------CCCcCHHHHHHHHHHhC-cEEee-------ecCCHHHH-----HHH
Confidence 34456789999988751 12 45677999999999876 55543 33456553 345
Q ss_pred hcCCccEEEE--ccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 223 SLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 223 e~~Gvd~I~v--hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
.+.|+|.|-- .|.|.. .. . ...+++++.++++. ++|||+-|+|++++++.++++.||++|.||++.
T Consensus 109 ~~~G~D~I~TTLsGYT~~------t~--~-~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAI- 176 (192)
T PF04131_consen 109 AELGFDIIGTTLSGYTPY------TK--G-DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAI- 176 (192)
T ss_dssp HHTT-SEEE-TTTTSSTT------ST--T-SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHH-
T ss_pred HHcCCCEEEcccccCCCC------CC--C-CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECccc-
Confidence 6799999863 333321 11 1 34569999999875 899999999999999999999999999999976
Q ss_pred hCCcchhhh
Q 013789 301 QNPWYTLGH 309 (436)
Q Consensus 301 ~~P~lf~~~ 309 (436)
.+|++..++
T Consensus 177 TrP~~It~~ 185 (192)
T PF04131_consen 177 TRPQEITKR 185 (192)
T ss_dssp H-HHHHHHH
T ss_pred CCHHHHHHH
Confidence 778765443
No 104
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.68 E-value=1.8e-06 Score=79.64 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=107.8
Q ss_pred CCcEEEEEcCCC----HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc--cCCcE
Q 013789 124 QHPIVLQIGGSN----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVPV 197 (436)
Q Consensus 124 ~~pi~vQL~g~~----p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~--~~iPv 197 (436)
..|+++++...+ .+...+.++.+.++|+|+|.+.. |. +.....+.+.+.+.++++.+. .++|+
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~pv 116 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI---------GSLKEGDWEEVLEEIAAVVEAADGGLPL 116 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH---------HHHhCCCHHHHHHHHHHHHHHhcCCceE
Confidence 578999999988 88889999999999999998852 21 111112468888888888887 48999
Q ss_pred EEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCC
Q 013789 198 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 276 (436)
Q Consensus 198 svKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI 276 (436)
.++...+.. .+.+++.+ +.+++++.|++.|..+.... .+ ..+++.+.++++..+ ++||+..||+
T Consensus 117 ~iy~~p~~~--~~~~~~~~-~~~~~~~~g~~~iK~~~~~~--~~----------~~~~~~~~~i~~~~~~~~~v~~~gg~ 181 (201)
T cd00945 117 KVILETRGL--KTADEIAK-AARIAAEAGADFIKTSTGFG--GG----------GATVEDVKLMKEAVGGRVGVKAAGGI 181 (201)
T ss_pred EEEEECCCC--CCHHHHHH-HHHHHHHhCCCEEEeCCCCC--CC----------CCCHHHHHHHHHhcccCCcEEEECCC
Confidence 999988765 23334443 24455678999998764211 01 112666667766554 6899999999
Q ss_pred CCHHHHHHHHHcCCCeeeeh
Q 013789 277 NTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 277 ~s~~da~~~l~~Gad~VmiG 296 (436)
.+++.+.+++..||+++.+|
T Consensus 182 ~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 182 KTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCHHHHHHHHHhccceeecC
Confidence 99999999999999999876
No 105
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.68 E-value=1.5e-06 Score=83.11 Aligned_cols=204 Identities=14% Similarity=0.145 Sum_probs=120.2
Q ss_pred ccCCeecCCcEEEcCCCCCChH-HHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCC-CCCcEEEEEc-CCCHH
Q 013789 61 MVARQYLPPWFSVAPMMDWTDN-HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP-EQHPIVLQIG-GSNLD 137 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMagvtd~-~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~-~~~pi~vQL~-g~~p~ 137 (436)
.|++..++.|+++.= ..+.+. .++...+.. |+.++..- +.-..+. ......++++-+ .+..+..|-. +.+.+
T Consensus 2 ~i~~~~~~SRl~~Gt-gky~s~~~~~~ai~aS-g~~ivTva-~rR~~~~--~~~~~~~~~~i~~~~~~~lpNTaG~~ta~ 76 (248)
T cd04728 2 TIGGKTFSSRLLLGT-GKYPSPAIMKEAIEAS-GAEIVTVA-LRRVNIG--DPGGESFLDLLDKSGYTLLPNTAGCRTAE 76 (248)
T ss_pred eECCEEeecceEEec-CCCCCHHHHHHHHHHh-CCCEEEEE-EEecccC--CCCcchHHhhccccCCEECCCCCCCCCHH
Confidence 488999999988753 335444 455555555 46544322 2211111 112223333222 2333444444 46788
Q ss_pred HHHHHHHHHHHC-CCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHH
Q 013789 138 NLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (436)
Q Consensus 138 ~~~~aA~~~~~~-G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~ 216 (436)
+-.+.|+++.+. |-|+|-|-.- . | --.|+.|+....+..+.+.+. |+-+..-+. ++..
T Consensus 77 eAv~~a~lare~~~~~~iKlEVi-------~-d--~~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~------dd~~---- 135 (248)
T cd04728 77 EAVRTARLAREALGTDWIKLEVI-------G-D--DKTLLPDPIETLKAAEILVKE-GFTVLPYCT------DDPV---- 135 (248)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEe-------c-C--ccccccCHHHHHHHHHHHHHC-CCEEEEEeC------CCHH----
Confidence 899999999886 4577766521 1 1 113445555444444444321 322211111 1222
Q ss_pred HHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 217 ~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
+++.+++.|+++|-.+|..- |.+ .+..+.+++..+++. .++|||+.|||.+++|+.++++.|||+|++|
T Consensus 136 -~ar~l~~~G~~~vmPlg~pI---Gsg------~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 136 -LAKRLEDAGCAAVMPLGSPI---GSG------QGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred -HHHHHHHcCCCEeCCCCcCC---CCC------CCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 14456678999996665543 211 122237788877776 4899999999999999999999999999999
Q ss_pred HHHHh
Q 013789 297 RAAYQ 301 (436)
Q Consensus 297 Ra~l~ 301 (436)
+|...
T Consensus 205 SAIt~ 209 (248)
T cd04728 205 TAIAK 209 (248)
T ss_pred hHhcC
Confidence 99974
No 106
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.67 E-value=3.9e-07 Score=86.70 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=88.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
-++.+.++|+|.|-++...-.. .+.+.+.++++.+++..++|+.+.+ .+.++. ..
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~-------------p~~~~~~~~i~~~~~~g~~~iiv~v-------~t~~ea-----~~ 138 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPR-------------PDGETLAELIKRIHEEYNCLLMADI-------STLEEA-----LN 138 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCC-------------CCCcCHHHHHHHHHHHhCCeEEEEC-------CCHHHH-----HH
Confidence 4467788899998887532110 0002466788777765567776642 223332 23
Q ss_pred hhcCCccEEEE--ccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 222 SSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 222 ~e~~Gvd~I~v--hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
+.+.|+|++.+ ||++..... .....++++.++.+.. ++||+++|||.+++++.++++.|||+|++|+++
T Consensus 139 a~~~G~d~i~~~~~g~t~~~~~--------~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal 209 (219)
T cd04729 139 AAKLGFDIIGTTLSGYTEETAK--------TEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred HHHcCCCEEEccCccccccccC--------CCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHH
Confidence 45689999965 455431110 0112378888887766 899999999999999999999999999999998
Q ss_pred HhCCcc
Q 013789 300 YQNPWY 305 (436)
Q Consensus 300 l~~P~l 305 (436)
+...+.
T Consensus 210 ~~~~~~ 215 (219)
T cd04729 210 TRPEHI 215 (219)
T ss_pred hChHhH
Confidence 765553
No 107
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.67 E-value=6.1e-07 Score=86.89 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHH-----HHHHHHhhccCCcEE--EEeccCCC
Q 013789 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG-----EAMSVIAANTNVPVS--VKCRIGVD 206 (436)
Q Consensus 134 ~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~-----eiv~av~~~~~iPvs--vKiR~G~~ 206 (436)
.+.+.+.++++.+++. +|.||||.-||.+.. . |..+.+....+. ++++++++.+++|+. +|...-.
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~a----d-G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~- 87 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPKY----D-GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYV- 87 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCCC----C-CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhh-
Confidence 4678899999988887 999999999998742 2 666777777777 899999988899974 4444311
Q ss_pred CCCcHHHHHHHHHHHhhcCCccEEEEccC--c---c--------cccC------------------------------CC
Q 013789 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSR--K---A--------LLNG------------------------------IS 243 (436)
Q Consensus 207 ~~~~~~~~~~~la~~~e~~Gvd~I~vhgr--t---~--------~~~G------------------------------~~ 243 (436)
...++ ++. .+.++|+|+|++|.- + . ...| ..
T Consensus 88 --~~~~~---~i~-~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 88 --DSLDN---FLN-MARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred --hCHHH---HHH-HHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeC
Confidence 12222 222 234578888887731 0 0 0001 00
Q ss_pred CCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 244 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 244 ~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
+.......+.-.+.+.++.+...+.||+.-|||.+++++.++++.|||+|.+|++++.
T Consensus 162 ~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 162 PATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0000111111133455555544357999999999999999999999999999999875
No 108
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.67 E-value=7.3e-08 Score=93.71 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=67.1
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.|++|.+++...+. +.+++.++++.+.. ++||+++|||.|.+|++++++.||++|++||+
T Consensus 36 a~~~~~~G~~~i~i~dl~~~~~~~---------~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 36 AKRYNEEGADELVFLDITASSEGR---------DTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred HHHHHHcCCCEEEEEeCCcccccC---------cchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 445668999999999998632221 23488899988875 89999999999999999999999999999999
Q ss_pred HHhCCcchhh
Q 013789 299 AYQNPWYTLG 308 (436)
Q Consensus 299 ~l~~P~lf~~ 308 (436)
++.||+++.+
T Consensus 106 ~l~~p~~~~e 115 (253)
T PRK02083 106 AVANPELISE 115 (253)
T ss_pred HhhCcHHHHH
Confidence 9999998643
No 109
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=98.65 E-value=1.4e-06 Score=84.91 Aligned_cols=209 Identities=17% Similarity=0.217 Sum_probs=124.5
Q ss_pred cCCeecCCcEEEcCCCC----CChH--HHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCC-
Q 013789 62 VARQYLPPWFSVAPMMD----WTDN--HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS- 134 (436)
Q Consensus 62 i~~l~l~n~iilAPMag----vtd~--~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~- 134 (436)
+-+..+.-||.+||-+- ..|- .-.++|...| ...+.+-+.+.. .+.+.+-.|.+ ---.||.-.
T Consensus 62 vlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~-~~~i~Ss~at~S--------~EdI~~aap~~-~rwfQLYvyk 131 (363)
T KOG0538|consen 62 VLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAG-TIMILSSWATCS--------VEDIASAAPPG-IRWFQLYVYK 131 (363)
T ss_pred eccccccceeEEcchHHHhccCCcccHHHHHHHHhcC-CcEEEechhcCC--------HHHHHhhCCCC-cEEEEEEecC
Confidence 55888889999999642 2233 3344454443 444444333211 12222212222 345788754
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCC--------------------ccc-------cC-C-----CccccccCChHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSP--------------------KVA-------GH-G-----CFGVSLMLDPKF 181 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~--------------------~v~-------r~-g-----~yG~~Ll~~~~~ 181 (436)
|-+--.+..++++++||..+-+..--|.- ... .. + .|++.. -+|.+
T Consensus 132 dr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~-id~Sl 210 (363)
T KOG0538|consen 132 DRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQ-IDPSL 210 (363)
T ss_pred chHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcC-CCCCC
Confidence 44555678889999999987774333320 000 00 0 011110 12223
Q ss_pred HHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE--ccCcccccCCCCCCCCCCCCccHHHHH
Q 013789 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYY 259 (436)
Q Consensus 182 l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v--hgrt~~~~G~~~~~~~~i~~~~~~~v~ 259 (436)
-=+=++.+++.+.+||.+|=-+. .++ ++.+.++|++.|+| ||..+... .|...+.++
T Consensus 211 ~W~Di~wLr~~T~LPIvvKGilt------~eD-----A~~Ave~G~~GIIVSNHGgRQlD~----------vpAtI~~L~ 269 (363)
T KOG0538|consen 211 SWKDIKWLRSITKLPIVVKGVLT------GED-----ARKAVEAGVAGIIVSNHGGRQLDY----------VPATIEALP 269 (363)
T ss_pred ChhhhHHHHhcCcCCeEEEeecc------cHH-----HHHHHHhCCceEEEeCCCccccCc----------ccchHHHHH
Confidence 33446677788899999983331 122 22334699999999 55443211 122367777
Q ss_pred HHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 260 ALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 260 ~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
++++.+. +|||..-|||+++.|+.++|.+||.+|.|||.++.-
T Consensus 270 Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 270 EVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchhee
Confidence 8777653 699999999999999999999999999999987643
No 110
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.64 E-value=9.6e-08 Score=92.18 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=66.7
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.|+++.++.. |.. .+.+++.+.++.+.. ++||+++|||.+.++++++++.||++|++||+
T Consensus 33 a~~~~~~G~~~i~i~d~~~~--~~~-------~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 33 AKRYNEQGADELVFLDITAS--SEG-------RETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred HHHHHHCCCCEEEEEcCCcc--ccc-------CcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEECch
Confidence 45567899999999988752 211 233588888888875 89999999999999999999999999999999
Q ss_pred HHhCCcchhh
Q 013789 299 AYQNPWYTLG 308 (436)
Q Consensus 299 ~l~~P~lf~~ 308 (436)
++.||+++.+
T Consensus 103 ~~~~p~~~~~ 112 (243)
T cd04731 103 AVENPELIRE 112 (243)
T ss_pred hhhChHHHHH
Confidence 9999998643
No 111
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.63 E-value=1.5e-07 Score=88.17 Aligned_cols=145 Identities=22% Similarity=0.295 Sum_probs=94.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
+-|++++++|+-.+------|.+ .|+.+ |-+-|.||+.+.+|+.+| .+||..|+|+|-.. + ++
T Consensus 31 EQA~IAE~aGAvAVMaLervPaD--iR~aG-GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~~--------E--A~ 93 (296)
T COG0214 31 EQARIAEEAGAVAVMALERVPAD--IRAAG-GVARMADPKMIEEIMDAV----SIPVMAKVRIGHFV--------E--AQ 93 (296)
T ss_pred HHHHHHHhcCceeEeehhhCcHH--HHhcc-CccccCCHHHHHHHHHhc----ccceeeeeecchhH--------H--HH
Confidence 45788899998766554456664 45555 889999999999998876 79999999998321 2 45
Q ss_pred HhhcCCccEEEEc-----------------------c-Cc---c-----------cccCCCCCCC---------------
Q 013789 221 VSSLSPTRHFIIH-----------------------S-RK---A-----------LLNGISPAEN--------------- 247 (436)
Q Consensus 221 ~~e~~Gvd~I~vh-----------------------g-rt---~-----------~~~G~~~~~~--------------- 247 (436)
++|..|+|+|.=+ | |. + ..+|..+..+
T Consensus 94 iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI 173 (296)
T COG0214 94 ILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEI 173 (296)
T ss_pred HHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 6677777777321 1 10 0 0011110000
Q ss_pred CCCCC--------------ccHHHHHHHHhcCCCcEE--EEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 248 RTIPP--------------LKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 248 ~~i~~--------------~~~~~v~~l~~~~~~iPV--IanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
+.+.. ..++++..+.+. .++|| ++.|||.++.|+.-++++|||||-+|+|++...
T Consensus 174 ~~l~~~~edel~~~Ak~~~~p~elv~~~~~~-grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~ 244 (296)
T COG0214 174 RRLQSMTEDELYVVAKELQAPYELVKEVAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 244 (296)
T ss_pred HHHHccCHHHHHHHHHHhCChHHHHHHHHHh-CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCC
Confidence 00000 013444444333 37787 599999999999999999999999999986544
No 112
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.60 E-value=2.6e-06 Score=81.49 Aligned_cols=203 Identities=14% Similarity=0.148 Sum_probs=118.7
Q ss_pred cccCCeecCCcEEEcCCCCCChHH-HHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCC-CCCcEEEEEc-CCCH
Q 013789 60 EMVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP-EQHPIVLQIG-GSNL 136 (436)
Q Consensus 60 ~~i~~l~l~n~iilAPMagvtd~~-fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~-~~~pi~vQL~-g~~p 136 (436)
+.|++..++.|+++.= ..+.+.. ++...... |+.++..- +.-..+.... ..+++.-+ .+..+..|-. +++.
T Consensus 2 l~i~~~~~~SRl~~Gt-gky~s~~~~~~ai~as-g~~ivTva-lrR~~~~~~~---~~~~~~i~~~~~~~lpNTaG~~ta 75 (250)
T PRK00208 2 LTIAGKTFSSRLLLGT-GKYPSPQVMQEAIEAS-GAEIVTVA-LRRVNLGQGG---DNLLDLLPPLGVTLLPNTAGCRTA 75 (250)
T ss_pred cEECCEEeeccceEec-CCCCCHHHHHHHHHHh-CCCeEEEE-EEeecCCCCc---chHHhhccccCCEECCCCCCCCCH
Confidence 4589999999998753 3455554 45555555 46544322 2211111111 23333222 2333444444 5678
Q ss_pred HHHHHHHHHHHHC-CCCEEEecC-CCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHH
Q 013789 137 DNLAKATELANAY-NYDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 137 ~~~~~aA~~~~~~-G~d~IdLN~-gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~ 214 (436)
++-.+.|+++.++ |-++|-|-. +-|. .++.|+..+.+-.+.+.+. |+-+..-+. ++...
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEVi~d~~-----------~llpd~~~tv~aa~~L~~~-Gf~vlpyc~------~d~~~- 136 (250)
T PRK00208 76 EEAVRTARLAREALGTNWIKLEVIGDDK-----------TLLPDPIETLKAAEILVKE-GFVVLPYCT------DDPVL- 136 (250)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCC-----------CCCcCHHHHHHHHHHHHHC-CCEEEEEeC------CCHHH-
Confidence 9999999999885 456777652 1121 2334444443333333221 322211111 12221
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeee
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~Vm 294 (436)
++.+++.|+++|-.+|..- |.+ .+..+.+++..+++. .++|||+.|||.+++|+.++++.|||+|+
T Consensus 137 ----ak~l~~~G~~~vmPlg~pI---Gsg------~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVl 202 (250)
T PRK00208 137 ----AKRLEEAGCAAVMPLGAPI---GSG------LGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (250)
T ss_pred ----HHHHHHcCCCEeCCCCcCC---CCC------CCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4456678999996655543 211 122236677777776 48999999999999999999999999999
Q ss_pred ehHHHHh
Q 013789 295 VGRAAYQ 301 (436)
Q Consensus 295 iGRa~l~ 301 (436)
+|+|...
T Consensus 203 V~SAItk 209 (250)
T PRK00208 203 LNTAIAV 209 (250)
T ss_pred EChHhhC
Confidence 9999975
No 113
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.60 E-value=2.8e-06 Score=80.62 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=92.9
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~ 203 (436)
+.|+.++=+..+++ -++.+.++|+|+|-+.. +. -.++.+.++++.... .++.+.+-+.
T Consensus 72 ~iPi~~~~~i~~~~----~v~~~~~~Gad~v~l~~--~~--------------~~~~~~~~~~~~~~~-~g~~~~v~v~- 129 (217)
T cd00331 72 SLPVLRKDFIIDPY----QIYEARAAGADAVLLIV--AA--------------LDDEQLKELYELARE-LGMEVLVEVH- 129 (217)
T ss_pred CCCEEECCeecCHH----HHHHHHHcCCCEEEEee--cc--------------CCHHHHHHHHHHHHH-cCCeEEEEEC-
Confidence 57877665555553 35667788999986642 11 112566677766533 3544433322
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHH
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEV 282 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da 282 (436)
+.+++.+ +.+.|++.+.+++++.... ..+++.+.++.+.+ .++|||+.|||.+++++
T Consensus 130 ------~~~e~~~-----~~~~g~~~i~~t~~~~~~~-----------~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi 187 (217)
T cd00331 130 ------DEEELER-----ALALGAKIIGINNRDLKTF-----------EVDLNTTERLAPLIPKDVILVSESGISTPEDV 187 (217)
T ss_pred ------CHHHHHH-----HHHcCCCEEEEeCCCcccc-----------CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHH
Confidence 3333322 2458999999987764211 12256777777765 37999999999999999
Q ss_pred HHHHHcCCCeeeehHHHHhCCcc
Q 013789 283 NAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 283 ~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
.++++.|||+|.+|++++..++.
T Consensus 188 ~~~~~~Ga~gvivGsai~~~~~p 210 (217)
T cd00331 188 KRLAEAGADAVLIGESLMRAPDP 210 (217)
T ss_pred HHHHHcCCCEEEECHHHcCCCCH
Confidence 99999999999999999987763
No 114
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.54 E-value=1.2e-06 Score=89.57 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~ 214 (436)
++....+.++.+.++|+|.|-++.-- +...|.+. -.+|..+.++++. .++||.+ -+. .+.++.
T Consensus 140 ~~~~~~e~a~~l~eAGad~I~ihgrt------~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~---G~V---~t~e~A 202 (369)
T TIGR01304 140 SPQNAREIAPIVVKAGADLLVIQGTL------VSAEHVST-SGEPLNLKEFIGE----LDVPVIA---GGV---NDYTTA 202 (369)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccc------hhhhccCC-CCCHHHHHHHHHH----CCCCEEE---eCC---CCHHHH
Confidence 34566778888899999999998321 11222111 1356655555544 4789865 122 234333
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCC-CCCCCCCCccHHHHHHHH---h----cCC--CcEEEEeCCCCCHHHHHH
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISP-AENRTIPPLKYEYYYALL---R----DFP--DLTFTLNGGINTVDEVNA 284 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~-~~~~~i~~~~~~~v~~l~---~----~~~--~iPVIanGgI~s~~da~~ 284 (436)
. +++ ++|+|+|.+ |+... ..+. .....++. ...+.++. + +.. .+|||+.|||.+..|+.+
T Consensus 203 ~----~~~-~aGaDgV~~-G~gg~--~~~~~~lg~~~p~--~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~k 272 (369)
T TIGR01304 203 L----HLM-RTGAAGVIV-GPGGA--NTTRLVLGIEVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVK 272 (369)
T ss_pred H----HHH-HcCCCEEEE-CCCCC--cccccccCCCCCH--HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHH
Confidence 2 233 489999883 32210 0000 00011221 33343332 1 121 399999999999999999
Q ss_pred HHHcCCCeeeehHHHHhCCc
Q 013789 285 ALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 285 ~l~~Gad~VmiGRa~l~~P~ 304 (436)
++..|||+||+|+.++..-.
T Consensus 273 AlAlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 273 AIACGADAVVLGSPLARAAE 292 (369)
T ss_pred HHHcCCCEeeeHHHHHhhhc
Confidence 99999999999999987544
No 115
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.52 E-value=3.8e-07 Score=87.23 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=66.2
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|+|.++++.+++...+. +.+++++.++.+.. ++||+++|||.+.+++++++++|||.|++|++
T Consensus 35 a~~~~~~g~d~l~v~dl~~~~~~~---------~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~ 104 (234)
T cd04732 35 AKKWEEAGAKWLHVVDLDGAKGGE---------PVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTA 104 (234)
T ss_pred HHHHHHcCCCEEEEECCCccccCC---------CCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECch
Confidence 455667999999999887643221 12378888887776 89999999999999999999999999999999
Q ss_pred HHhCCcchhh
Q 013789 299 AYQNPWYTLG 308 (436)
Q Consensus 299 ~l~~P~lf~~ 308 (436)
++.+|+++.+
T Consensus 105 ~l~dp~~~~~ 114 (234)
T cd04732 105 AVKNPELVKE 114 (234)
T ss_pred HHhChHHHHH
Confidence 9999998643
No 116
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.50 E-value=1.8e-06 Score=82.16 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=83.7
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
-++.+.++|+|.|-+.. |... +.+ | +.+.++++.+++..++|+.+.+ .+.+++ +.
T Consensus 80 ~v~~a~~aGad~I~~d~--~~~~--~p~--~-------~~~~~~i~~~~~~~~i~vi~~v-------~t~ee~-----~~ 134 (221)
T PRK01130 80 EVDALAAAGADIIALDA--TLRP--RPD--G-------ETLAELVKRIKEYPGQLLMADC-------STLEEG-----LA 134 (221)
T ss_pred HHHHHHHcCCCEEEEeC--CCCC--CCC--C-------CCHHHHHHHHHhCCCCeEEEeC-------CCHHHH-----HH
Confidence 35677889999887653 2110 000 0 3456777777664567766532 133332 23
Q ss_pred hhcCCccEEEEcc--CcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 222 SSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 222 ~e~~Gvd~I~vhg--rt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
+.+.|+|+|.++. .+. ... ......++++.++.+.. ++||++.|||.+++++.++++.|||+|++|+++
T Consensus 135 a~~~G~d~i~~~~~g~t~----~~~----~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai 205 (221)
T PRK01130 135 AQKLGFDFIGTTLSGYTE----ETK----KPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAI 205 (221)
T ss_pred HHHcCCCEEEcCCceeec----CCC----CCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHh
Confidence 4579999998743 221 100 01122367788887765 899999999999999999999999999999997
Q ss_pred HhCCcc
Q 013789 300 YQNPWY 305 (436)
Q Consensus 300 l~~P~l 305 (436)
+. |+.
T Consensus 206 ~~-~~~ 210 (221)
T PRK01130 206 TR-PEE 210 (221)
T ss_pred cC-CHH
Confidence 54 443
No 117
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.49 E-value=2.9e-06 Score=82.96 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=45.1
Q ss_pred cHHHHHHHHhcCCC-cEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 254 KYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 254 ~~~~v~~l~~~~~~-iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+++.+.++.+..++ +|+|+-|||.+++++.++++.|||+|.||++++..++.
T Consensus 197 d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp 249 (260)
T PRK00278 197 DLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDP 249 (260)
T ss_pred CHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence 36666777776654 69999999999999999999999999999999988874
No 118
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.48 E-value=4.2e-06 Score=85.59 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~ 214 (436)
++.+..+.++.+.++|+|.|.++..-.. ..|+..- .+++.+.++++. .++||.+ |- ..+.+..
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~------~~h~~~~-~~~~~i~~~ik~----~~ipVIa----G~--V~t~e~A 201 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVS------AEHVSKE-GEPLNLKEFIYE----LDVPVIV----GG--CVTYTTA 201 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchh------hhccCCc-CCHHHHHHHHHH----CCCCEEE----eC--CCCHHHH
Confidence 3445567778888999999999853211 1122110 145555444443 4788865 21 2233332
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCCC--CCCCCCCccHHHHHHHHh---cC------CCcEEEEeCCCCCHHHHH
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPA--ENRTIPPLKYEYYYALLR---DF------PDLTFTLNGGINTVDEVN 283 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~--~~~~i~~~~~~~v~~l~~---~~------~~iPVIanGgI~s~~da~ 283 (436)
. ++ .++|+|+|.+ |+.... +.... ..-.++. ...+.++++ ++ .++|||+.|||.+..|+.
T Consensus 202 ~----~l-~~aGAD~V~V-G~G~Gs-~~~t~~~~g~g~p~--~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~dia 272 (368)
T PRK08649 202 L----HL-MRTGAAGVLV-GIGPGA-ACTSRGVLGIGVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIA 272 (368)
T ss_pred H----HH-HHcCCCEEEE-CCCCCc-CCCCcccCCCCcCH--HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHH
Confidence 2 22 3499999977 554310 10000 0001222 333444332 11 159999999999999999
Q ss_pred HHHHcCCCeeeehHHHHhCCc
Q 013789 284 AALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 284 ~~l~~Gad~VmiGRa~l~~P~ 304 (436)
+++..|||+||+|+.+.....
T Consensus 273 kAlalGAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 273 KAIACGADAVMLGSPLARAAE 293 (368)
T ss_pred HHHHcCCCeecccchhccccc
Confidence 999999999999999987543
No 119
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.45 E-value=7.3e-07 Score=90.70 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=68.9
Q ss_pred CChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCC-----CCCCC
Q 013789 177 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA-----ENRTI 250 (436)
Q Consensus 177 ~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~-----~~~~i 250 (436)
.+++-+.+.|..+|+.. +.||++|+-.+.. .+++ +..+.++|+|.|++.|... |++.+ ++--+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~----~~~~----~~~~~~ag~D~ItIDG~~G---GTGAap~~~~d~~Gl 253 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRG----VEDI----AAGAAKAGADFITIDGAEG---GTGAAPLTSMDHVGL 253 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT----HHHH----HHHHHHTT-SEEEEE-TT------SSEECCHHHHC--
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCc----HHHH----HHhhhhccCCEEEEeCCCC---CCCCCchhHHhhCCC
Confidence 56788899999999977 8999999987632 2222 2224569999999998764 33211 11111
Q ss_pred CCccHHHHHHH----HhcC--CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 251 PPLKYEYYYAL----LRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 251 ~~~~~~~v~~l----~~~~--~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
|. ...+..+ .+.- .+|.+|+.||+.++.|+.+++.+|||+|.+||++|.
T Consensus 254 P~--~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~li 308 (368)
T PF01645_consen 254 PT--EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALI 308 (368)
T ss_dssp -H--HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHH
T ss_pred cH--HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhh
Confidence 21 1112222 1111 258999999999999999999999999999999884
No 120
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.43 E-value=7.9e-07 Score=86.57 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=65.5
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.|+++...+...+ ...+++.+.++.+.. ++||++.|||.|.+|+.+++..||+.|++||+
T Consensus 36 a~~~~~~G~~~l~v~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 36 AQRYDEEGADELVFLDITASSEG---------RTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSINTA 105 (254)
T ss_pred HHHHHHcCCCEEEEEcCCccccc---------ChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 44556799999999987753111 123488888888875 89999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.||+++.
T Consensus 106 ~~~~p~~~~ 114 (254)
T TIGR00735 106 AVKNPELIY 114 (254)
T ss_pred HhhChHHHH
Confidence 999999864
No 121
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.41 E-value=1.5e-06 Score=80.47 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=90.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
+-|++++++|+-.+-.----|.+ .|+.+ |-+-|.||+++.||..+| .+||..|.|+|--. + ++
T Consensus 32 eQA~iAE~aGACaVmalervPad--iR~~G-gV~RMsDP~mIKei~~aV----siPVMAk~RiGHFV--------E--AQ 94 (296)
T KOG1606|consen 32 EQARIAEEAGACAVMALERVPAD--IRAQG-GVARMSDPRMIKEIKNAV----SIPVMAKVRIGHFV--------E--AQ 94 (296)
T ss_pred HHHHHHHhcCcceEeeeccCCHh--HHhcC-CeeecCCHHHHHHHHHhc----cchhhhhhhhhhhh--------H--HH
Confidence 45778889997666554455654 34444 788999999988887665 89999999997321 1 34
Q ss_pred HhhcCCccEE---------------------------------------------EEccCcccccCCCC-----------
Q 013789 221 VSSLSPTRHF---------------------------------------------IIHSRKALLNGISP----------- 244 (436)
Q Consensus 221 ~~e~~Gvd~I---------------------------------------------~vhgrt~~~~G~~~----------- 244 (436)
++|..|+|+| ...|-. |.++
T Consensus 95 IlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGea----gTG~v~EaVkhvr~i 170 (296)
T KOG1606|consen 95 ILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEA----GTGDVSEAVKHVRSI 170 (296)
T ss_pred HHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheecccc----CCCcHHHHHHHHHHH
Confidence 4455555554 221110 1000
Q ss_pred ---------CCCCCCCC------ccHHHHHHHHhcCCCcEE--EEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 245 ---------AENRTIPP------LKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 245 ---------~~~~~i~~------~~~~~v~~l~~~~~~iPV--IanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
.+.+.+.+ ..++++.+..+. .++|| +++|||.++.|+.-++++|||||-+|.|.+..++=
T Consensus 171 ~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~-GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP 247 (296)
T KOG1606|consen 171 NGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQL-GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDP 247 (296)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHc-CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCH
Confidence 00000000 003333333332 37888 59999999999999999999999999999877763
No 122
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.40 E-value=1.4e-05 Score=80.20 Aligned_cols=137 Identities=10% Similarity=0.067 Sum_probs=102.4
Q ss_pred CCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC-CcEEE
Q 013789 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSV 199 (436)
Q Consensus 121 ~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~-iPvsv 199 (436)
..+..|+..|+++.+++.+.+.++.+.+.||+.|.+++|. +++...+.++++++.++ +++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~-----------------~~~~d~~~v~~lr~~~g~~~l~v 182 (316)
T cd03319 120 APRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG-----------------DLEDDIERIRAIREAAPDARLRV 182 (316)
T ss_pred CCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC-----------------ChhhHHHHHHHHHHhCCCCeEEE
Confidence 3456688889999999999988888888999999999763 12345677888887664 77888
Q ss_pred EeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH
Q 013789 200 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (436)
Q Consensus 200 KiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~ 279 (436)
+.+.+|+. + +..++ .+.+++.|+++|. + .+++.+++.+.++.+.. ++||++++.+.+.
T Consensus 183 D~n~~~~~-~---~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~~-~ipIa~~E~~~~~ 240 (316)
T cd03319 183 DANQGWTP-E---EAVEL-LRELAELGVELIE----Q------------PVPAGDDDGLAYLRDKS-PLPIMADESCFSA 240 (316)
T ss_pred eCCCCcCH-H---HHHHH-HHHHHhcCCCEEE----C------------CCCCCCHHHHHHHHhcC-CCCEEEeCCCCCH
Confidence 88888874 2 33333 4456678888773 1 11222477777877764 8999999999999
Q ss_pred HHHHHHHH-cCCCeeeeh
Q 013789 280 DEVNAALR-KGAHHVMVG 296 (436)
Q Consensus 280 ~da~~~l~-~Gad~VmiG 296 (436)
+++.++++ .++|.|++-
T Consensus 241 ~~~~~~~~~~~~d~v~~~ 258 (316)
T cd03319 241 ADAARLAGGGAYDGINIK 258 (316)
T ss_pred HHHHHHHhcCCCCEEEEe
Confidence 99999998 779999854
No 123
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.39 E-value=6.3e-06 Score=80.12 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=98.6
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccC----ChHHHHHHHHHH-hhccCCcEEE
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML----DPKFVGEAMSVI-AANTNVPVSV 199 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~----~~~~l~eiv~av-~~~~~iPvsv 199 (436)
-++-+|++|.-. . +.++.+-+.|++-|-||- ...+ +|+++.++++.. .+.+-+-+.+
T Consensus 82 ~~~~vqvGGGIR--~-e~i~~~l~~Ga~rViigT---------------~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~ 143 (262)
T PLN02446 82 YPGGLQVGGGVN--S-ENAMSYLDAGASHVIVTS---------------YVFRDGQIDLERLKDLVRLVGKQRLVLDLSC 143 (262)
T ss_pred CCCCEEEeCCcc--H-HHHHHHHHcCCCEEEEch---------------HHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 347899998775 3 566666778999886652 2223 499999999887 3333333555
Q ss_pred Ee--------ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEcc--CcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcE
Q 013789 200 KC--------RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (436)
Q Consensus 200 Ki--------R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhg--rt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iP 269 (436)
|. --||...... ++.+++.+. .+.|+..|.++. |..+..|. +++++.++.+. +++|
T Consensus 144 k~~~g~~~Va~~GW~~~t~~-~~~e~~~~~-~~~g~~eii~TdI~rDGtl~G~-----------d~el~~~l~~~-~~ip 209 (262)
T PLN02446 144 RKKDGRYYVVTDRWQKFSDL-AVDEETLEF-LAAYCDEFLVHGVDVEGKRLGI-----------DEELVALLGEH-SPIP 209 (262)
T ss_pred EecCCCEEEEECCCcccCCC-CHHHHHHHH-HHhCCCEEEEEEEcCCCcccCC-----------CHHHHHHHHhh-CCCC
Confidence 42 1256543221 233333333 457899998874 44333332 37888888877 4999
Q ss_pred EEEeCCCCCHHHHHHHHHc--CCCeeeehHHHH
Q 013789 270 FTLNGGINTVDEVNAALRK--GAHHVMVGRAAY 300 (436)
Q Consensus 270 VIanGgI~s~~da~~~l~~--Gad~VmiGRa~l 300 (436)
||++|||.+.+|+.++.+. |+.+|.+|++++
T Consensus 210 VIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 210 VTYAGGVRSLDDLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred EEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHH
Confidence 9999999999999999985 689999999984
No 124
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.19 E-value=1.8e-05 Score=84.15 Aligned_cols=133 Identities=14% Similarity=0.118 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHH
Q 013789 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 217 (436)
Q Consensus 138 ~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~ 217 (436)
+..+-++.+.++|+|.|++. +.. + ..+.+.+.++.+++.++.++.|+- | ...+.+...
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd--~a~------g--------~~~~~~~~i~~ir~~~~~~~~V~a--G--nV~t~e~a~-- 299 (502)
T PRK07107 242 DYAERVPALVEAGADVLCID--SSE------G--------YSEWQKRTLDWIREKYGDSVKVGA--G--NVVDREGFR-- 299 (502)
T ss_pred hHHHHHHHHHHhCCCeEeec--Ccc------c--------ccHHHHHHHHHHHHhCCCCceEEe--c--cccCHHHHH--
Confidence 33344445666899999876 111 1 224467888888887764444442 2 112333332
Q ss_pred HHHHhhcCCccEEEE--ccC----cccccCCCCCCCCCCCCccHHHHHHHHhc-------CC-CcEEEEeCCCCCHHHHH
Q 013789 218 IYKVSSLSPTRHFII--HSR----KALLNGISPAENRTIPPLKYEYYYALLRD-------FP-DLTFTLNGGINTVDEVN 283 (436)
Q Consensus 218 la~~~e~~Gvd~I~v--hgr----t~~~~G~~~~~~~~i~~~~~~~v~~l~~~-------~~-~iPVIanGgI~s~~da~ 283 (436)
.+.++|+|+|.| |+. |+...| ++...+..+.++.+. .. ++|||+-|||.+..|+.
T Consensus 300 ---~li~aGAd~I~vg~g~Gs~c~tr~~~~--------~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~ 368 (502)
T PRK07107 300 ---YLAEAGADFVKVGIGGGSICITREQKG--------IGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMT 368 (502)
T ss_pred ---HHHHcCCCEEEECCCCCcCcccccccC--------CCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHH
Confidence 233599999988 322 111112 122225555555442 11 39999999999999999
Q ss_pred HHHHcCCCeeeehHHHHhCC
Q 013789 284 AALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 284 ~~l~~Gad~VmiGRa~l~~P 303 (436)
+++..|||+||+||.+-+.-
T Consensus 369 KAla~GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 369 LALAMGADFIMLGRYFARFD 388 (502)
T ss_pred HHHHcCCCeeeeChhhhccc
Confidence 99999999999999987753
No 125
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.19 E-value=1.5e-05 Score=76.83 Aligned_cols=144 Identities=17% Similarity=0.225 Sum_probs=92.2
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe----c
Q 013789 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC----R 202 (436)
Q Consensus 127 i~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi----R 202 (436)
+-+|+.|.-. .+. .++.+-++|++-+-+ |+...++|+++.++.+..-+.+-+-+.+|- .
T Consensus 77 ~pi~vGGGIr-s~e-~v~~~l~~Ga~kvvi---------------gt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~ 139 (234)
T PRK13587 77 KDIEVGGGIR-TKS-QIMDYFAAGINYCIV---------------GTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKV 139 (234)
T ss_pred CeEEEcCCcC-CHH-HHHHHHHCCCCEEEE---------------CchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEe
Confidence 3488876432 122 234444578776533 555568899999998776332212233321 2
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEccC--cccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHH
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgr--t~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~ 280 (436)
.||.+.... ++.+++ +.+++.|+..+.+..- ....+| .+++++.++.+.. ++|||+.|||.+.+
T Consensus 140 ~gw~~~~~~-~~~~~~-~~~~~~g~~~ii~tdi~~dGt~~G-----------~~~~li~~l~~~~-~ipvi~~GGi~s~e 205 (234)
T PRK13587 140 NGWEEDTEL-NLFSFV-RQLSDIPLGGIIYTDIAKDGKMSG-----------PNFELTGQLVKAT-TIPVIASGGIRHQQ 205 (234)
T ss_pred cCCcccCCC-CHHHHH-HHHHHcCCCEEEEecccCcCCCCc-----------cCHHHHHHHHHhC-CCCEEEeCCCCCHH
Confidence 356442211 223332 3345689998887533 222222 2377788887764 89999999999999
Q ss_pred HHHHHHHcCCCeeeehHHHHh
Q 013789 281 EVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 281 da~~~l~~Gad~VmiGRa~l~ 301 (436)
|+.++++.|+++|.+|++++.
T Consensus 206 di~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 206 DIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHcCCCEEEEhHHHHh
Confidence 999999999999999999986
No 126
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.18 E-value=1.4e-05 Score=77.51 Aligned_cols=146 Identities=15% Similarity=0.171 Sum_probs=94.4
Q ss_pred cEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe----
Q 013789 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC---- 201 (436)
Q Consensus 126 pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi---- 201 (436)
++-+|+.|.-.. . +.++.+-+.|+|-|-+ |+....+|+++.++.+..-+.+-+-+.+|.
T Consensus 74 ~~~v~vgGGIrs-~-e~~~~~l~~Ga~~vvi---------------gT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~ 136 (243)
T TIGR01919 74 VVVEELSGGRRD-D-SSLRAALTGGRARVNG---------------GTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEW 136 (243)
T ss_pred CCCEEEcCCCCC-H-HHHHHHHHcCCCEEEE---------------CchhhCCHHHHHHHHHHccccEEEEEEEecCCce
Confidence 467788875321 1 2333444568887633 445557899999888766333223344441
Q ss_pred ----ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEcc--CcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC
Q 013789 202 ----RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (436)
Q Consensus 202 ----R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhg--rt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg 275 (436)
..||.. .. .++.++ .+.+++.|+..|.++. |....+|. +++++.++.+. +++|||++||
T Consensus 137 ~~v~~~Gw~~-~~-~~~~~~-~~~~~~~g~~~ii~tdI~~dGt~~G~-----------d~~l~~~l~~~-~~~pviasGG 201 (243)
T TIGR01919 137 HTLGNRGWSD-GG-GDLEVL-ERLLDSGGCSRVVVTDSKKDGLSGGP-----------NELLLEVVAAR-TDAIVAASGG 201 (243)
T ss_pred EEEECCCeec-CC-CcHHHH-HHHHHhCCCCEEEEEecCCcccCCCc-----------CHHHHHHHHhh-CCCCEEEECC
Confidence 225654 21 123333 3345779999999874 33333332 37777777766 4899999999
Q ss_pred CCCHHHHHHHHH---cCCCeeeehHHHHhCC
Q 013789 276 INTVDEVNAALR---KGAHHVMVGRAAYQNP 303 (436)
Q Consensus 276 I~s~~da~~~l~---~Gad~VmiGRa~l~~P 303 (436)
|.+.+|+.++.+ .|+++|.+|++++..-
T Consensus 202 v~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 202 SSLLDDLRAIKYLDEGGVSVAIGGKLLYARF 232 (243)
T ss_pred cCCHHHHHHHHhhccCCeeEEEEhHHHHcCC
Confidence 999999998743 5999999999987664
No 127
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.16 E-value=0.0003 Score=67.54 Aligned_cols=211 Identities=10% Similarity=0.024 Sum_probs=121.1
Q ss_pred CccccCCeecCCcEEEcCCCCCChH-HHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhcc-CCCCCcEEEEEc-CC
Q 013789 58 KAEMVARQYLPPWFSVAPMMDWTDN-HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIG-GS 134 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMagvtd~-~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~-~~~~~pi~vQL~-g~ 134 (436)
+++.|++.++..|+++.= ..+.+. .++...... |+.++..- +.-..+. .......++++ ......+-.|-. +.
T Consensus 6 d~l~i~g~~f~SRL~lGT-gky~s~~~~~~ai~aS-g~evvTva-lRR~~~~-~~~~~~~~l~~i~~~~~~~LPNTaGc~ 81 (267)
T CHL00162 6 DKLKIGNKSFNSRLMLGT-GKYKSLKDAIQSIEAS-GCEIVTVA-IRRLNNN-LLNDNSNLLNGLDWNKLWLLPNTAGCQ 81 (267)
T ss_pred CceEECCEEeecceEEec-CCCCCHHHHHHHHHHh-CCcEEEEE-EEEeccC-cCCCcchHHHhhchhccEECCcCcCCC
Confidence 456799999999998753 335444 455555555 45544322 2211211 00111233332 122333444444 56
Q ss_pred CHHHHHHHHHHHHHCC-------CCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCC
Q 013789 135 NLDNLAKATELANAYN-------YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD 207 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G-------~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~ 207 (436)
+.++-.+.|+++.+.+ -++|-|-.- . | --.|+-|+-.+.+..+.+.+. |+-|.. +..
T Consensus 82 tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi-------~-D--~~~LlPD~~etl~Aae~Lv~e-GF~VlP-----Y~~ 145 (267)
T CHL00162 82 TAEEAIRMAFLGRELAKQLGQEDNNFVKLEVI-------S-D--PKYLLPDPIGTLKAAEFLVKK-GFTVLP-----YIN 145 (267)
T ss_pred CHHHHHHHHHHHHHHhccccccCCCeEEEEEe-------C-C--CcccCCChHHHHHHHHHHHHC-CCEEee-----cCC
Confidence 7888889999988864 466666421 1 1 123555655444444444332 332321 111
Q ss_pred CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH
Q 013789 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (436)
Q Consensus 208 ~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~ 287 (436)
.+ . .+++-+++.||.+|---|-.- |.+ .+..+...+..+++. +++|||.-+||.+++|+.++++
T Consensus 146 ~D-~-----v~a~rLed~Gc~aVMPlgsPI---GSg------~Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~AmE 209 (267)
T CHL00162 146 AD-P-----MLAKHLEDIGCATVMPLGSPI---GSG------QGLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQAME 209 (267)
T ss_pred CC-H-----HHHHHHHHcCCeEEeeccCcc---cCC------CCCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHHHH
Confidence 12 1 136677899999887644221 111 111224455555555 5899999999999999999999
Q ss_pred cCCCeeeehHHHHhCCc
Q 013789 288 KGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 288 ~Gad~VmiGRa~l~~P~ 304 (436)
.|||+|.+.+|...-++
T Consensus 210 lGaDgVL~nSaIakA~d 226 (267)
T CHL00162 210 LGASGVLLNTAVAQAKN 226 (267)
T ss_pred cCCCEEeecceeecCCC
Confidence 99999999999874443
No 128
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.15 E-value=1.1e-05 Score=77.54 Aligned_cols=144 Identities=17% Similarity=0.272 Sum_probs=93.5
Q ss_pred cEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh-ccCCcEEEEec--
Q 013789 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCR-- 202 (436)
Q Consensus 126 pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~-~~~iPvsvKiR-- 202 (436)
++-+|+.|.-. .+. .++.+-+.|++-+-+ |+....+|+++.++.+..-+ .+=+-+.+|..
T Consensus 73 ~~~i~vgGGIr-s~e-d~~~ll~~Ga~~Vvi---------------gt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~ 135 (229)
T PF00977_consen 73 GIPIQVGGGIR-SIE-DAERLLDAGADRVVI---------------GTEALEDPELLEELAERYGSQRIVVSLDARDGYK 135 (229)
T ss_dssp SSEEEEESSE--SHH-HHHHHHHTT-SEEEE---------------SHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEE
T ss_pred CccEEEeCccC-cHH-HHHHHHHhCCCEEEe---------------ChHHhhchhHHHHHHHHcCcccEEEEEEeeeceE
Confidence 47888887533 222 334445678775422 66677899999999888755 33233444432
Q ss_pred ---cCCCCC--CcHHHHHHHHHHHhhcCCccEEEEccCcc--cccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC
Q 013789 203 ---IGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (436)
Q Consensus 203 ---~G~~~~--~~~~~~~~~la~~~e~~Gvd~I~vhgrt~--~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg 275 (436)
-||... .+..+++ +.+++.|+..+.++.-.. ..+| .+++++.++.+.+ ++|||++||
T Consensus 136 v~~~gw~~~~~~~~~~~~----~~~~~~g~~~ii~tdi~~dGt~~G-----------~d~~~~~~l~~~~-~~~viasGG 199 (229)
T PF00977_consen 136 VATNGWQESSGIDLEEFA----KRLEELGAGEIILTDIDRDGTMQG-----------PDLELLKQLAEAV-NIPVIASGG 199 (229)
T ss_dssp EEETTTTEEEEEEHHHHH----HHHHHTT-SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS
T ss_pred EEecCccccCCcCHHHHH----HHHHhcCCcEEEEeeccccCCcCC-----------CCHHHHHHHHHHc-CCCEEEecC
Confidence 245543 2344443 344678999999874332 2222 2378888887776 999999999
Q ss_pred CCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 276 INTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 276 I~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
|.+.+|+.++.+.|+++|.+|++++..
T Consensus 200 v~~~~Dl~~l~~~G~~gvivg~al~~g 226 (229)
T PF00977_consen 200 VRSLEDLRELKKAGIDGVIVGSALHEG 226 (229)
T ss_dssp --SHHHHHHHHHTTECEEEESHHHHTT
T ss_pred CCCHHHHHHHHHCCCcEEEEehHhhCC
Confidence 999999999999999999999999753
No 129
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.13 E-value=0.00014 Score=71.03 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=96.5
Q ss_pred cEEEEEcCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCcc-----ccCCCcccccc--CChHHHHHHHHHHhhc-cCC
Q 013789 126 PIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKV-----AGHGCFGVSLM--LDPKFVGEAMSVIAAN-TNV 195 (436)
Q Consensus 126 pi~vQL~g~--~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v-----~r~g~yG~~Ll--~~~~~l~eiv~av~~~-~~i 195 (436)
.++.=+... +.+...++++.+.+.|+|.|||..=...+.. ++ .+--+|. -+.+.+.++++++++. .++
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~--a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 88 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQA--ADLRALRAGMTPEKCFELLKKVRQKHPNI 88 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 355555444 5577888888889999999999753322110 00 0000000 3456788899999876 788
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccC--------------------------cc---------c--
Q 013789 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--------------------------KA---------L-- 238 (436)
Q Consensus 196 PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgr--------------------------t~---------~-- 238 (436)
|+..-+=.+.-..-..+ +++. .+.++|+|.+++|.- |. .
T Consensus 89 plv~m~Y~Npi~~~G~e---~f~~-~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 89 PIGLLTYYNLIFRKGVE---EFYA-KCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred CEEEEEeccHHhhhhHH---HHHH-HHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC
Confidence 86532221110000011 1211 223455555555421 10 0
Q ss_pred -------ccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 239 -------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 239 -------~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
..|.++.. ....+...+.+.++.+. .++||+.-|||.+++++.++.+.|||+|.+|++++
T Consensus 165 gfiy~vs~~G~TG~~-~~~~~~~~~~i~~lr~~-~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 165 GFVYLVSRAGVTGAR-NRAASALNELVKRLKAY-SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred CCEEEEECCCCCCCc-ccCChhHHHHHHHHHhh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 01222221 11222235667676665 47899999999999999999999999999999985
No 130
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.11 E-value=1.5e-05 Score=76.99 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=91.1
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe----c
Q 013789 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC----R 202 (436)
Q Consensus 127 i~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi----R 202 (436)
+-+|+.|.-.. + +.++.+-+.|++-+-| |+...++|+++.++ ...-+.+-+-+.+|- .
T Consensus 74 ~~v~vGGGIrs-~-e~~~~~l~~Ga~rvvi---------------gT~a~~~p~~l~~~-~~~~~~ivvslD~k~g~v~~ 135 (241)
T PRK14114 74 EHIQIGGGIRS-L-DYAEKLRKLGYRRQIV---------------SSKVLEDPSFLKFL-KEIDVEPVFSLDTRGGKVAF 135 (241)
T ss_pred CcEEEecCCCC-H-HHHHHHHHCCCCEEEE---------------CchhhCCHHHHHHH-HHhCCCEEEEEEccCCEEee
Confidence 34688765321 1 2333444578876533 44556789999988 443222112233321 1
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEcc--CcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHH
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhg--rt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~ 280 (436)
-||...... +..++ .+.+++.|+..|.+.. |....+|. +++++.++.+.. ++|||++|||.+.+
T Consensus 136 ~gw~~~~~~-~~~e~-~~~~~~~g~~~ii~tdI~rdGt~~G~-----------d~el~~~l~~~~-~~pviasGGv~s~~ 201 (241)
T PRK14114 136 KGWLAEEEI-DPVSL-LKRLKEYGLEEIVHTEIEKDGTLQEH-----------DFSLTRKIAIEA-EVKVFAAGGISSEN 201 (241)
T ss_pred CCCeecCCC-CHHHH-HHHHHhcCCCEEEEEeechhhcCCCc-----------CHHHHHHHHHHC-CCCEEEECCCCCHH
Confidence 255442211 12333 3345779999998863 33333332 378888887764 89999999999999
Q ss_pred HHHHHHHc-----C-CCeeeehHHHHhCC
Q 013789 281 EVNAALRK-----G-AHHVMVGRAAYQNP 303 (436)
Q Consensus 281 da~~~l~~-----G-ad~VmiGRa~l~~P 303 (436)
|+.++.+. | +++|.+|++++..-
T Consensus 202 Dl~~l~~~~~~~~g~v~gvivg~Al~~g~ 230 (241)
T PRK14114 202 SLKTAQRVHRETNGLLKGVIVGRAFLEGI 230 (241)
T ss_pred HHHHHHhcccccCCcEEEEEEehHHHCCC
Confidence 99999885 6 99999999987654
No 131
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.09 E-value=3.9e-05 Score=73.23 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=69.6
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEe----ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCC
Q 013789 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKC----RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 247 (436)
Q Consensus 172 G~~Ll~~~~~l~eiv~av~~~~~iPvsvKi----R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~ 247 (436)
|+..+++|+++.++.. . +-+.+|- ..||.. +..++.+ .+++.|+ .+.+..-.. .|..
T Consensus 108 gT~a~~~p~~l~~~~~----v--vslD~~~g~v~~~g~~~--~~~~~~~----~~~~~g~-~ii~tdI~~--dGt~---- 168 (221)
T TIGR00734 108 ATETLDITELLRECYT----V--VSLDFKEKFLDASGLFE--SLEEVRD----FLNSFDY-GLIVLDIHS--VGTM---- 168 (221)
T ss_pred cChhhCCHHHHHHhhh----E--EEEEeECCccccccccc--cHHHHHH----HHHhcCC-EEEEEECCc--cccC----
Confidence 5666688998887751 1 1233331 124542 3333333 3456787 565542211 1211
Q ss_pred CCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 248 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 248 ~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
...+++++.++.+.. ++|||+.|||.+.+|+.++.+.|||+|.+|++++.
T Consensus 169 ---~G~d~eli~~i~~~~-~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 169 ---KGPNLELLTKTLELS-EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred ---CCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 112488888888775 89999999999999999988899999999999875
No 132
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.09 E-value=0.00054 Score=65.14 Aligned_cols=208 Identities=14% Similarity=0.123 Sum_probs=113.5
Q ss_pred ccCCeecCCcEEEcCCCCCC-hHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccC-CCCCcEEEEEcC-CCHH
Q 013789 61 MVARQYLPPWFSVAPMMDWT-DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS-PEQHPIVLQIGG-SNLD 137 (436)
Q Consensus 61 ~i~~l~l~n~iilAPMagvt-d~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~-~~~~pi~vQL~g-~~p~ 137 (436)
||++.+++.|+++.= ..+. ...++...... |+.++ |=.+.-..+.. ....+.++++- ..+..+..|-.| .+.+
T Consensus 1 ki~g~~f~SRL~lGT-gky~s~~~m~~ai~aS-g~evv-TvalRR~~~~~-~~~~~~~~~~i~~~~~~lLPNTaGc~tA~ 76 (247)
T PF05690_consen 1 KIGGKEFRSRLILGT-GKYPSPEVMREAIEAS-GAEVV-TVALRRVNLGS-KPGGDNILDYIDRSGYTLLPNTAGCRTAE 76 (247)
T ss_dssp -ETTEEES-SEEEE--STSSSHHHHHHHHHHT-T-SEE-EEECCGSTTTS--TTCHHCCCCTTCCTSEEEEE-TT-SSHH
T ss_pred CcCCEEeecceEEec-CCCCCHHHHHHHHHHh-CCcEE-EEEEecccCCC-CCCCccHHHHhcccCCEECCcCCCCCCHH
Confidence 478999999998763 3354 44555555655 45543 32222222211 11123444432 355667778764 6789
Q ss_pred HHHHHHHHHHHC-CCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHH
Q 013789 138 NLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (436)
Q Consensus 138 ~~~~aA~~~~~~-G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~ 216 (436)
+-.+.|+++.|+ |-++|-|-.-- | --.|+-|+-.+.+..+.+++. |+-|..=+. + | .
T Consensus 77 EAv~~A~laRe~~~t~wIKLEVi~--------D--~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~---~--D----~-- 134 (247)
T PF05690_consen 77 EAVRTARLAREAFGTNWIKLEVIG--------D--DKTLLPDPIETLKAAEILVKE-GFVVLPYCT---D--D----P-- 134 (247)
T ss_dssp HHHHHHHHHHHTTS-SEEEE--BS-----------TTT--B-HHHHHHHHHHHHHT-T-EEEEEE----S-------H--
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC--------C--CCCcCCChhHHHHHHHHHHHC-CCEEeecCC---C--C----H--
Confidence 999999999886 56788775311 1 123445554444444444332 333322111 1 1 1
Q ss_pred HHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 217 ~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
.+++-+++.||.+|---|-.- |.+ .+..+...+..++++. ++|||.-+||.++.|+..+++.|||+|.+.
T Consensus 135 v~akrL~d~GcaavMPlgsPI---GSg------~Gi~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 135 VLAKRLEDAGCAAVMPLGSPI---GSG------RGIQNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp HHHHHHHHTT-SEBEEBSSST---TT---------SSTHHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHCCCCEEEeccccc---ccC------cCCCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 136677899999887654321 111 1222355667777776 999999999999999999999999999999
Q ss_pred HHHHhCCc
Q 013789 297 RAAYQNPW 304 (436)
Q Consensus 297 Ra~l~~P~ 304 (436)
++.-.-.+
T Consensus 205 TAiA~A~d 212 (247)
T PF05690_consen 205 TAIAKAKD 212 (247)
T ss_dssp HHHHTSSS
T ss_pred hHHhccCC
Confidence 99865433
No 133
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.08 E-value=0.00014 Score=70.66 Aligned_cols=203 Identities=11% Similarity=0.093 Sum_probs=124.7
Q ss_pred CCCCCChHHHHHHH-HHcCCCcEEEeccccchhhhhc-ccchhhhhc-----c-CCCCCcEEEEEcCCCHHHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ-QGNLDRFLA-----F-SPEQHPIVLQIGGSNLDNLAKATELA 146 (436)
Q Consensus 75 PMagvtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~~-~~~~~~~~~-----~-~~~~~pi~vQL~g~~p~~~~~aA~~~ 146 (436)
.|..+-+...+.+- -+.||.+-++-|-......... .+.+-..+. + ..-.-|++||+.-+++. .+..++
T Consensus 22 ~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~---aal~iA 98 (257)
T TIGR00259 22 NLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAV---AALAIA 98 (257)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCH---HHHHHH
Confidence 34445566666663 3557898888886665544221 111111110 1 22346899999998875 345566
Q ss_pred HHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCc--EEEEeccCCCCCCcHHHHHHHHHHHhhc
Q 013789 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP--VSVKCRIGVDDHDSYNQLCDFIYKVSSL 224 (436)
Q Consensus 147 ~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iP--vsvKiR~G~~~~~~~~~~~~~la~~~e~ 224 (436)
...|+|+|-+|.-|-.- + +++ | -+..+...+.+..+.+.+.+.+= |-+|...-.. ..+.++.++ .....
T Consensus 99 ~a~ga~FIRv~~~~g~~-~--~d~-G-~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~-~~~~~e~a~---~~~~~ 169 (257)
T TIGR00259 99 MAVGAKFIRVNVLTGVY-A--SDQ-G-IIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLG-NRDLESIAL---DTVER 169 (257)
T ss_pred HHhCCCEEEEccEeeeE-e--ccc-c-cccccHHHHHHHHHHcCCCcEEEeceeecccCcCC-CCCHHHHHH---HHHHh
Confidence 77899999998665542 2 232 3 34455556666666655322211 3444443111 234444432 22344
Q ss_pred CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 225 ~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
.++|+|+|+|... |.. .+|+.+.++++..+++||+.+||| +++.+.++++. ||||.+|+++=.+.
T Consensus 170 ~~aDavivtG~~T---G~~---------~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~G 234 (257)
T TIGR00259 170 GLADAVILSGKTT---GTE---------VDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKDG 234 (257)
T ss_pred cCCCEEEECcCCC---CCC---------CCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccCC
Confidence 5699999998754 432 238888877765668999999999 78999999986 99999999976333
No 134
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.06 E-value=0.00025 Score=69.22 Aligned_cols=150 Identities=15% Similarity=0.203 Sum_probs=90.6
Q ss_pred CCCcEEEEEcCCCH------H-HHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh---c
Q 013789 123 EQHPIVLQIGGSNL------D-NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---N 192 (436)
Q Consensus 123 ~~~pi~vQL~g~~p------~-~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~---~ 192 (436)
.+.++++.+.+..| + .+...++.+.+.|+|+|++-.-. |. ..+.+.+ +.+.++++ .
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~-----------g~--~~~~~~~-~~~~~i~~~~~~ 134 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNV-----------GS--DTEWEQI-RDLGMIAEICDD 134 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEec-----------CC--chHHHHH-HHHHHHHHHHHH
Confidence 35567888844322 1 34455667778899998875321 11 0122334 44555554 3
Q ss_pred cCCcEEEEec-cCCCCC-CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEE
Q 013789 193 TNVPVSVKCR-IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (436)
Q Consensus 193 ~~iPvsvKiR-~G~~~~-~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPV 270 (436)
.++|+.+..- .|.... .+.+++. ...+...+.|+|+|-+.. .+ ..+.+.++++.. .+||
T Consensus 135 ~g~~liv~~~~~Gvh~~~~~~~~~~-~~~~~a~~~GADyikt~~-----~~------------~~~~l~~~~~~~-~iPV 195 (258)
T TIGR01949 135 WGVPLLAMMYPRGPHIDDRDPELVA-HAARLGAELGADIVKTPY-----TG------------DIDSFRDVVKGC-PAPV 195 (258)
T ss_pred cCCCEEEEEeccCcccccccHHHHH-HHHHHHHHHCCCEEeccC-----CC------------CHHHHHHHHHhC-CCcE
Confidence 4788776322 121111 1122222 223555679999999631 11 256677777654 7999
Q ss_pred EEeCCCC--CHHHHHH----HHHcCCCeeeehHHHHhCCcc
Q 013789 271 TLNGGIN--TVDEVNA----ALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 271 IanGgI~--s~~da~~----~l~~Gad~VmiGRa~l~~P~l 305 (436)
++.|||. |.+++.+ +++.||+++.+||+++..++.
T Consensus 196 va~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp 236 (258)
T TIGR01949 196 VVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDP 236 (258)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCH
Confidence 9999999 6555544 447999999999999987763
No 135
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.05 E-value=0.00014 Score=69.44 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHCCCCEEEe--cCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHH
Q 013789 137 DNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 137 ~~~~~aA~~~~~~G~d~IdL--N~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~ 214 (436)
+.-...++.+.+.|+|.||+ |.+++.. .+.+.+.+-+.++++.+ .|+.+|+=+-..+. +-+++
T Consensus 74 ~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~-------------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~~e~i 138 (221)
T PRK00507 74 AVKAFEAKDAIANGADEIDMVINIGALKS-------------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-TDEEK 138 (221)
T ss_pred HHHHHHHHHHHHcCCceEeeeccHHHhcC-------------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-CHHHH
Confidence 44444556677789999985 5555442 35677787778887754 35677764322221 12233
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCee
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHV 293 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~V 293 (436)
. .+.+++.++|+|+|.....-. .+| ...+.+..+.+.. .+++|.++|||.|.+++.++++.||+.+
T Consensus 139 ~-~a~~~~~~agadfIKTsTG~~-~~g-----------at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 139 V-KACEIAKEAGADFVKTSTGFS-TGG-----------ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred H-HHHHHHHHhCCCEEEcCCCCC-CCC-----------CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 3 345566789999776542110 111 1244444444433 3699999999999999999999999988
Q ss_pred eehHHH
Q 013789 294 MVGRAA 299 (436)
Q Consensus 294 miGRa~ 299 (436)
...++.
T Consensus 206 GtS~~~ 211 (221)
T PRK00507 206 GTSAGV 211 (221)
T ss_pred ccCcHH
Confidence 776653
No 136
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.05 E-value=7.6e-05 Score=75.55 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=47.1
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
++.++|+|.|++..- +|.+-. . .+.+.-+++.+|++.||+ |.|-+.+.++.++..|||++=||
T Consensus 258 ll~~aGvdvviLDSS----qGnS~~------q--iemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 258 LLVQAGVDVVILDSS----QGNSIY------Q--LEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HhhhcCCcEEEEecC----CCcchh------H--HHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 455799999998532 243321 1 566777778889998885 78889999999999999987665
No 137
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.04 E-value=3.3e-05 Score=73.85 Aligned_cols=79 Identities=24% Similarity=0.384 Sum_probs=63.6
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.+++........|. ..+++.+.++.+.. ++||++.|||.+.+|++++++.||+.|++|++
T Consensus 36 a~~~~~~g~~~i~v~dld~~~~g~---------~~~~~~i~~i~~~~-~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 36 AKAWEDQGAKWLHLVDLDGAKAGK---------PVNLELIEAIVKAV-DIPVQVGGGIRSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred HHHHHHcCCCEEEEEeCCccccCC---------cccHHHHHHHHHHC-CCCEEEcCCcCCHHHHHHHHHcCCCEEEECch
Confidence 455677999999998764432221 12377788887765 89999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.+|.++.
T Consensus 106 ~l~~~~~l~ 114 (233)
T PRK00748 106 AVKNPELVK 114 (233)
T ss_pred HHhCHHHHH
Confidence 999997643
No 138
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=98.02 E-value=0.0011 Score=62.67 Aligned_cols=206 Identities=12% Similarity=0.113 Sum_probs=117.5
Q ss_pred CccccCCeecCCcEEEcCCCCCChHH-HHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEc-CCC
Q 013789 58 KAEMVARQYLPPWFSVAPMMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GSN 135 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMagvtd~~-fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~-g~~ 135 (436)
++++|++.+++.|+++.- ..+++.+ +...++..| ..++..-+=.++....+.+++..+ +.+.+-.+-.|-. |.+
T Consensus 6 d~l~i~g~~f~SRLllGT-gky~s~~~~~~av~asg-~~ivTvAlRR~~~~~~~~~~~l~~--l~~~~~~~LPNTaGc~t 81 (262)
T COG2022 6 DMLTIAGKTFDSRLLLGT-GKYPSPAVLAEAVRASG-SEIVTVALRRVNATRPGGDGILDL--LIPLGVTLLPNTAGCRT 81 (262)
T ss_pred cceeecCeeeeeeEEEec-CCCCCHHHHHHHHHhcC-CceEEEEEEeecccCCCcchHHHH--hhhcCcEeCCCccccCC
Confidence 567799999999998653 3455554 455556654 554433332222211112222222 2223333333333 567
Q ss_pred HHHHHHHHHHHHHC-CCCEEEecC-CCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHH
Q 013789 136 LDNLAKATELANAY-NYDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (436)
Q Consensus 136 p~~~~~aA~~~~~~-G~d~IdLN~-gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~ 213 (436)
.++-...|+++.+. +-|+|.|-. +++. .|+-|+--..+..+.+.+. |+-|.. +...+.
T Consensus 82 aeEAv~tArlARE~~~t~wiKlEVi~d~~-----------tLlPD~~etl~Aae~Lv~e-GF~VlP-----Y~~dD~--- 141 (262)
T COG2022 82 AEEAVRTARLAREALGTNWIKLEVIGDEK-----------TLLPDPIETLKAAEQLVKE-GFVVLP-----YTTDDP--- 141 (262)
T ss_pred HHHHHHHHHHHHHHccCCeEEEEEecCCc-----------ccCCChHHHHHHHHHHHhC-CCEEee-----ccCCCH---
Confidence 89999999999885 456777753 2221 2334443333333333221 322211 122121
Q ss_pred HHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCee
Q 013789 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~V 293 (436)
.+++-+++.||.+|-=-|-.- | +..+..+-..+.-++++. ++|||.--||-++.|+..+++.|||+|
T Consensus 142 ---v~arrLee~GcaavMPl~aPI---G------Sg~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaV 208 (262)
T COG2022 142 ---VLARRLEEAGCAAVMPLGAPI---G------SGLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAV 208 (262)
T ss_pred ---HHHHHHHhcCceEeccccccc---c------CCcCcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhccccee
Confidence 236677889998765322111 1 112223344555666666 999999999999999999999999999
Q ss_pred eehHHHH
Q 013789 294 MVGRAAY 300 (436)
Q Consensus 294 miGRa~l 300 (436)
++-++.-
T Consensus 209 L~NTAiA 215 (262)
T COG2022 209 LLNTAIA 215 (262)
T ss_pred ehhhHhh
Confidence 9998864
No 139
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.02 E-value=0.00012 Score=68.55 Aligned_cols=152 Identities=15% Similarity=0.255 Sum_probs=90.0
Q ss_pred EEEcCCCHHHHHHHHHHHHHCCCCEEEecC-CCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEE--EEeccCC
Q 013789 129 LQIGGSNLDNLAKATELANAYNYDEINLNC-GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS--VKCRIGV 205 (436)
Q Consensus 129 vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~-gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvs--vKiR~G~ 205 (436)
+.|.+.|++.+.+.++.+.+.|+|.|++.+ -+|... +...-.++++++++..+.|+. ++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~-------------~~~~~~~~v~~i~~~~~~~v~v~lm~~--- 66 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP-------------NLTFGPPVLEALRKYTDLPIDVHLMVE--- 66 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CcccCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 457788999999999999999999999962 233321 111234556666655556643 3433
Q ss_pred CCCCcHHHHHHHHHHHhhcCCccEEEEccCcc--------cc--cCC------CC-------------CC----------
Q 013789 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--------LL--NGI------SP-------------AE---------- 246 (436)
Q Consensus 206 ~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~--------~~--~G~------~~-------------~~---------- 246 (436)
+ ..+ ++. .+.++|+|.|++|+... .. .|. +. .+
T Consensus 67 -~---~~~---~~~-~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g 138 (210)
T TIGR01163 67 -N---PDR---YIE-DFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG 138 (210)
T ss_pred -C---HHH---HHH-HHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC
Confidence 1 111 222 22367888888886520 00 000 00 00
Q ss_pred --CCCCCCccHHHHHHHHhcC----CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 247 --NRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 247 --~~~i~~~~~~~v~~l~~~~----~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
.....+..++.+.++.+.. +++||++.|||. ++.+.+++++|||+|.+||+++..++.
T Consensus 139 ~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~d~ 202 (210)
T TIGR01163 139 FGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGADDY 202 (210)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence 0001111122333332211 237999999995 799999999999999999999987763
No 140
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.98 E-value=0.00033 Score=67.18 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEe--cCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc-CCCCC--C
Q 013789 135 NLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-GVDDH--D 209 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdL--N~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~-G~~~~--~ 209 (436)
+.+.+...++.+.+.|+|+|++ +.+-.. .. ...+.+.++++..+ ..++|+.+=... |.... .
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~------~~------~~~~~i~~v~~~~~-~~g~~~iie~~~~g~~~~~~~ 140 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEE------ER------EMLEELARVAAEAH-KYGLPLIAWMYPRGPAVKNEK 140 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCch------HH------HHHHHHHHHHHHHH-HcCCCEEEEEeccCCcccCcc
Confidence 3445555566778899998844 543110 00 11223333333322 358887664332 21110 1
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCC--CCHHH----HH
Q 013789 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTVDE----VN 283 (436)
Q Consensus 210 ~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI--~s~~d----a~ 283 (436)
+.++ .+..++.+.+.|+|+|-+.. + + +.+.+.++++.. .+||++.||| .|.++ +.
T Consensus 141 ~~~~-i~~~~~~a~~~GaD~Ik~~~-~----~------------~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~ 201 (235)
T cd00958 141 DPDL-IAYAARIGAELGADIVKTKY-T----G------------DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVY 201 (235)
T ss_pred CHHH-HHHHHHHHHHHCCCEEEecC-C----C------------CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHH
Confidence 1222 22224456679999998731 1 0 256677777765 7999999997 67766 67
Q ss_pred HHHHcCCCeeeehHHHHhCCc
Q 013789 284 AALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 284 ~~l~~Gad~VmiGRa~l~~P~ 304 (436)
++++.||++|.+||.++..|+
T Consensus 202 ~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 202 DAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HHHHcCCcEEEechhhhcCCC
Confidence 778899999999999998876
No 141
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.00017 Score=67.01 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=55.4
Q ss_pred HhhcCCccEE--EEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 221 VSSLSPTRHF--IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 221 ~~e~~Gvd~I--~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
.+.+.|+|.| |++|.|.. + . .....++++++++.+ .+.+||+-|.+.+++.++++++.||++|.+|.+
T Consensus 142 ~a~~~G~D~IGTTLsGYT~~----~--~--~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsA 211 (229)
T COG3010 142 NAHKLGFDIIGTTLSGYTGY----T--E--KPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSA 211 (229)
T ss_pred HHHHcCCcEEecccccccCC----C--C--CCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcc
Confidence 4567999988 45565531 1 1 112235889988877 389999999999999999999999999999987
Q ss_pred HHhCCc
Q 013789 299 AYQNPW 304 (436)
Q Consensus 299 ~l~~P~ 304 (436)
+ .+|.
T Consensus 212 I-TRp~ 216 (229)
T COG3010 212 I-TRPE 216 (229)
T ss_pred c-CCHH
Confidence 5 5554
No 142
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.92 E-value=4.1e-05 Score=73.70 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=59.4
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
.+.+.|++.+++--.+....+. ...+..+.++.+.. ++|++.+|||.|.++++.+++.|||.|++|+.++
T Consensus 40 ~~~~~G~~~l~i~dl~~~~~~~---------~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 40 RWVDAGAETLHLVDLDGAFEGE---------RKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHcCCCEEEEEechhhhcCC---------cccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 3456899998653222211111 11277888888876 8999999999999999999999999999999999
Q ss_pred hCCcchh
Q 013789 301 QNPWYTL 307 (436)
Q Consensus 301 ~~P~lf~ 307 (436)
.+|+++.
T Consensus 110 ~~~~~~~ 116 (241)
T PRK13585 110 ENPEIVR 116 (241)
T ss_pred hChHHHH
Confidence 9999853
No 143
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.92 E-value=0.00022 Score=66.87 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=54.4
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
+++.|+|++.++..... .+ . ...++..++.+.++.+.. ++||++.||| +++++.+++++|+|+|++|+++..
T Consensus 111 a~~~Gadyi~~g~v~~t---~~-k--~~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 111 AEKNGADYVVYGHVFPT---DC-K--KGVPARGLEELSDIARAL-SIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHcCCCEEEECCCCCC---CC-C--CCCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 45689999976422110 00 0 112233578888877765 8999999999 999999999999999999999986
Q ss_pred CCc
Q 013789 302 NPW 304 (436)
Q Consensus 302 ~P~ 304 (436)
.+.
T Consensus 183 ~~~ 185 (201)
T PRK07695 183 SAN 185 (201)
T ss_pred CCC
Confidence 443
No 144
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.92 E-value=0.0005 Score=67.37 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=97.4
Q ss_pred cEEEEEcCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCcc-----ccCCCcccccc--CChHHHHHHHHHHhhccCCc
Q 013789 126 PIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKV-----AGHGCFGVSLM--LDPKFVGEAMSVIAANTNVP 196 (436)
Q Consensus 126 pi~vQL~g~--~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v-----~r~g~yG~~Ll--~~~~~l~eiv~av~~~~~iP 196 (436)
.++.=|... +.+...+.++.+.+.|+|.|||..=...+.. ++ .+--+|. -+.+.+.++++++++..++|
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~--a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQE--ASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHH--HHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 466555544 4577888888889999999999753322210 00 0001111 24567788889988777888
Q ss_pred EEEEeccCCCCC-CcHHHHHHHHHHHhhcCCccEEEEccC--------------------------cc------------
Q 013789 197 VSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSR--------------------------KA------------ 237 (436)
Q Consensus 197 vsvKiR~G~~~~-~~~~~~~~~la~~~e~~Gvd~I~vhgr--------------------------t~------------ 237 (436)
+.+- ++.+. -.+ -+.+|+.+ +.++|+|.+++|.- |.
T Consensus 94 ~vlm---~Y~N~i~~~-G~e~F~~~-~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 94 IVIF---TYYNPVLHY-GINKFIKK-ISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred EEEE---ecccHHHHh-CHHHHHHH-HHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 6432 11110 000 01122222 23466666666531 00
Q ss_pred ------cccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 238 ------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 238 ------~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
...|.++.. ..+..--.+++..+.+ ..++||..-+||.++++++++.+.|||||.+|++++.
T Consensus 169 gFIY~vS~~GvTG~~-~~~~~~~~~~i~~ir~-~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 169 GCIYLVSTTGVTGLK-TELDKKLKKLIETIKK-MTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred CcEEEEcCCCCCCCC-ccccHHHHHHHHHHHH-hcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 001333322 1122111334444444 4599999999999999999999999999999999976
No 145
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.91 E-value=0.00011 Score=70.68 Aligned_cols=140 Identities=15% Similarity=0.164 Sum_probs=89.2
Q ss_pred EEEEcCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH-hhccCCcEEEE----
Q 013789 128 VLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVK---- 200 (436)
Q Consensus 128 ~vQL~g~--~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av-~~~~~iPvsvK---- 200 (436)
-+|+.|. +.++ + +.+-+.|++-|-+ |+....+|+++.++.+.. .+.+-+-+.+|
T Consensus 75 ~v~vGGGIrs~e~---~-~~~l~~Ga~kvvi---------------gt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~ 135 (232)
T PRK13586 75 WIQVGGGIRDIEK---A-KRLLSLDVNALVF---------------STIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKR 135 (232)
T ss_pred CEEEeCCcCCHHH---H-HHHHHCCCCEEEE---------------CchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCE
Confidence 3788764 4443 2 3344568877633 555568899999998877 23221223331
Q ss_pred e-ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCc--ccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC
Q 013789 201 C-RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (436)
Q Consensus 201 i-R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt--~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~ 277 (436)
+ --||.. .. .++.++ .+.+++.|+..|.++.-. ....|. +++++..+.+. ..|+|++|||.
T Consensus 136 v~~~gw~~-~~-~~~~e~-~~~l~~~g~~~ii~tdI~~dGt~~G~-----------d~el~~~~~~~--~~~viasGGv~ 199 (232)
T PRK13586 136 VLIRGWKE-KS-MEVIDG-IKKVNELELLGIIFTYISNEGTTKGI-----------DYNVKDYARLI--RGLKEYAGGVS 199 (232)
T ss_pred EEccCCee-CC-CCHHHH-HHHHHhcCCCEEEEecccccccCcCc-----------CHHHHHHHHhC--CCCEEEECCCC
Confidence 1 125644 21 123333 334577999999887433 232332 37777666553 34599999999
Q ss_pred CHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 278 TVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 278 s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
+.+|+.++.+.|+++|.+|++++..
T Consensus 200 s~~Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 200 SDADLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred CHHHHHHHHHCCCCEEEEehhhhcC
Confidence 9999999999999999999999843
No 146
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.89 E-value=5.4e-05 Score=72.56 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=63.8
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.|+++.......+ ...+++.+.++.+.. ++||++.|||.+.+++.++++.||+.|++|++
T Consensus 36 a~~~~~~g~~~i~i~dl~~~~~~---------~~~n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~ 105 (232)
T TIGR03572 36 ARIYNAKGADELIVLDIDASKRG---------REPLFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSINTA 105 (232)
T ss_pred HHHHHHcCCCEEEEEeCCCcccC---------CCCCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 44557899999999876642111 123477788888775 89999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.+|.++.
T Consensus 106 ~l~~~~~~~ 114 (232)
T TIGR03572 106 ALENPDLIE 114 (232)
T ss_pred HhcCHHHHH
Confidence 999998753
No 147
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.87 E-value=0.00054 Score=66.34 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCcccccc----------CChHHHHHHHHHHhhccCCcEEEEecc
Q 013789 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM----------LDPKFVGEAMSVIAANTNVPVSVKCRI 203 (436)
Q Consensus 134 ~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll----------~~~~~l~eiv~av~~~~~iPvsvKiR~ 203 (436)
.+.+.+.+.++.+++.|+|.|+|+. |...-.- | |-... -+.+...++++.+++..++|+-+-.-.
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~-D--G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~ 85 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVA-D--GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYY 85 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCC-C--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 3567889999999999999999996 4421111 1 21111 123477889999998778886542111
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCccEEEE---c-----------------------cCcc--------c-c---------
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFII---H-----------------------SRKA--------L-L--------- 239 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd~I~v---h-----------------------grt~--------~-~--------- 239 (436)
+.......+. ++. .+.++|+|.+++ | .-|. . .
T Consensus 86 n~~~~~G~~~---fi~-~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~ 161 (242)
T cd04724 86 NPILQYGLER---FLR-DAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSR 161 (242)
T ss_pred CHHHHhCHHH---HHH-HHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeC
Confidence 1000000111 111 223455555555 1 1110 0 0
Q ss_pred cCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 240 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 240 ~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
.|..+.+. ...+...+.+.++++. .++||+.-|||.+.+++.++.+. ||+|.+|++++.
T Consensus 162 ~g~tG~~~-~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 162 TGVTGART-ELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred CCCCCCcc-CCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 01111110 0112224566666654 58999999999999999999999 999999998863
No 148
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.87 E-value=0.00065 Score=64.05 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 253 ~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
.+.+++.++++.. ++||+.-|||+|+++++++++.|||+|.+|
T Consensus 163 v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 163 VNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3467787777765 899999999999999999999999999987
No 149
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.85 E-value=0.00026 Score=68.78 Aligned_cols=204 Identities=13% Similarity=0.068 Sum_probs=122.4
Q ss_pred CCCCCChHHHHHHH-HHcCCCcEEEeccccchhhhhccc-chhhhh-----cc-CCCCCcEEEEEcCCCHHHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQG-NLDRFL-----AF-SPEQHPIVLQIGGSNLDNLAKATELA 146 (436)
Q Consensus 75 PMagvtd~~fr~~~-~~~Gg~gl~~temv~~~~l~~~~~-~~~~~~-----~~-~~~~~pi~vQL~g~~p~~~~~aA~~~ 146 (436)
+|..+-+...+.+- -+.||.+-+.-|-........... .+-..+ ++ ..-.-|++||+.-+++. .+..++
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~---aalaiA 99 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPK---AALAIA 99 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCH---HHHHHH
Confidence 34445566666663 345678888877665544322211 110100 01 12357999999998875 345566
Q ss_pred HHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCc--EEEEeccCCCCCCcHHHHHHHHHHHhhc
Q 013789 147 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP--VSVKCRIGVDDHDSYNQLCDFIYKVSSL 224 (436)
Q Consensus 147 ~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iP--vsvKiR~G~~~~~~~~~~~~~la~~~e~ 224 (436)
...|+|+|-+|.-|-.. + .++ | .+..+...+.+..+.+...+.+= |.+|...-... .+.++.+ ....+.
T Consensus 100 ~A~ga~FIRv~~~~g~~-~--~d~-G-~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~-~~~~~~~---~~a~~~ 170 (254)
T PF03437_consen 100 AATGADFIRVNVFVGAY-V--TDE-G-IIEGCAGELLRYRKRLGADVKILADVHVKHSSPLAT-RDLEEAA---KDAVER 170 (254)
T ss_pred HHhCCCEEEecCEEcee-c--ccC-c-cccccHHHHHHHHHHcCCCeEEEeeechhhcccCCC-CCHHHHH---HHHHHh
Confidence 77899999999766552 2 232 3 33444455555555443322111 23333332222 2344332 334467
Q ss_pred CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 225 ~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.++|+|+|+|... |.. .+.+.+.++++.. .+||+.++|+ +.+-+.+.++. |||+.+|+.+-.|-.
T Consensus 171 ~~aDaviVtG~~T---G~~---------~~~~~l~~vr~~~-~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G~ 235 (254)
T PF03437_consen 171 GGADAVIVTGKAT---GEP---------PDPEKLKRVREAV-PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDGK 235 (254)
T ss_pred cCCCEEEECCccc---CCC---------CCHHHHHHHHhcC-CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCCE
Confidence 8999999998654 322 2367777777766 4999999999 78999999875 999999998766655
Q ss_pred c
Q 013789 305 Y 305 (436)
Q Consensus 305 l 305 (436)
+
T Consensus 236 ~ 236 (254)
T PF03437_consen 236 W 236 (254)
T ss_pred e
Confidence 4
No 150
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.85 E-value=5.7e-05 Score=71.32 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=65.6
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++...+.|+|-++.-.-|+...|. ...++++.+.++.. .||+...|||.+.+|+.++|..|||-|.|.++
T Consensus 36 A~~Y~e~GADElvFlDItAs~~gr---------~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINsa 105 (256)
T COG0107 36 AKRYNEEGADELVFLDITASSEGR---------ETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINSA 105 (256)
T ss_pred HHHHHHcCCCeEEEEecccccccc---------hhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeChh
Confidence 556678999999886666532221 12378888888876 89999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.||.++.
T Consensus 106 Av~~p~lI~ 114 (256)
T COG0107 106 AVKDPELIT 114 (256)
T ss_pred HhcChHHHH
Confidence 999999864
No 151
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.83 E-value=0.0026 Score=59.64 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=105.9
Q ss_pred CCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEec
Q 013789 78 DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLN 157 (436)
Q Consensus 78 gvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN 157 (436)
..+-.....++...+ .|.-+-|.-++--...+.+.+..+.+..+ +..+++-+--.++..+ .++.+.++|+|.|-+|
T Consensus 8 ~~~~~~a~~~~~~l~-~~v~~iev~~~l~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 8 LLDIEEALELAEKVA-DYVDIIEIGTPLIKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEY--EAEQAFAAGADIVTVL 83 (206)
T ss_pred CCCHHHHHHHHHHcc-cCeeEEEeCCHHHHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHH--HHHHHHHcCCCEEEEe
Confidence 334444455555553 45555554221111112222333332222 3457766644466543 4566778999999888
Q ss_pred CCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe-ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCc
Q 013789 158 CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (436)
Q Consensus 158 ~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi-R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt 236 (436)
+-+|. ..+.++++.+++ .|+++.+-+ .. ....+++. .+ .+.|+|.+.++...
T Consensus 84 ~~~~~-----------------~~~~~~i~~~~~-~g~~~~~~~~~~----~t~~~~~~----~~-~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 84 GVADD-----------------ATIKGAVKAAKK-HGKEVQVDLINV----KDKVKRAK----EL-KELGADYIGVHTGL 136 (206)
T ss_pred ccCCH-----------------HHHHHHHHHHHH-cCCEEEEEecCC----CChHHHHH----HH-HHcCCCEEEEcCCc
Confidence 65431 234566666555 477776632 21 11122222 22 34699999886322
Q ss_pred ccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 237 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 237 ~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
. +. ...+..++.+.++.+..+.++|...||| +.+.+.++++.|||+|.+||+++..+.
T Consensus 137 ~---~~------~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 137 D---EQ------AKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKAAD 194 (206)
T ss_pred C---cc------cCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcCCCC
Confidence 1 10 1112235566666665555667779999 889999999999999999999877655
No 152
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.80 E-value=0.00041 Score=67.28 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=92.7
Q ss_pred cEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccC----ChHHHHHHHHHH-hhccCCcEEEE
Q 013789 126 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML----DPKFVGEAMSVI-AANTNVPVSVK 200 (436)
Q Consensus 126 pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~----~~~~l~eiv~av-~~~~~iPvsvK 200 (436)
.+-+|+.|.-. . +.++.+-++|++.+-|+ +.+.. +|+++.++.+.. .+.+-+-+.+|
T Consensus 76 ~~~v~vGGGIr-~--e~v~~~l~aGa~rVvIG---------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k 137 (253)
T TIGR02129 76 PGGLQVGGGIN-D--TNAQEWLDEGASHVIVT---------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCR 137 (253)
T ss_pred CCCEEEeCCcC-H--HHHHHHHHcCCCEEEEC---------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEE
Confidence 36788987664 2 44555566899988665 22223 478888888877 34333334554
Q ss_pred e---------ccCCCCCCcHHHHH-HHHHHHhhcCCccEEEEcc--CcccccCCCCCCCCCCCCccHHHHHHHHhcCCCc
Q 013789 201 C---------RIGVDDHDSYNQLC-DFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDL 268 (436)
Q Consensus 201 i---------R~G~~~~~~~~~~~-~~la~~~e~~Gvd~I~vhg--rt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~i 268 (436)
. --||...... ++. +++ +.+++. +..|.++. |..+.+|. +++++.++.+. +++
T Consensus 138 ~~~~g~~~V~~~GW~~~t~~-~~~~e~~-~~~~~~-~~~il~TdI~rDGtl~G~-----------dlel~~~l~~~-~~i 202 (253)
T TIGR02129 138 KTQDGRWIVAMNKWQTITDL-ELNAETL-EELSKY-CDEFLIHAADVEGLCKGI-----------DEELVSKLGEW-SPI 202 (253)
T ss_pred EcCCCcEEEEECCCcccCCC-ChHHHHH-HHHHhh-CCEEEEeeecccCccccC-----------CHHHHHHHHhh-CCC
Confidence 1 1256553221 222 333 334555 88888764 44333332 37888888776 599
Q ss_pred EEEEeCCCCCHHHHHHHHHc--CCCeeeehHHHHh
Q 013789 269 TFTLNGGINTVDEVNAALRK--GAHHVMVGRAAYQ 301 (436)
Q Consensus 269 PVIanGgI~s~~da~~~l~~--Gad~VmiGRa~l~ 301 (436)
|||++|||.+.+|+.++.+. |..++.+|++++.
T Consensus 203 pVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 203 PITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 99999999999999998653 7788999999875
No 153
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.79 E-value=0.00021 Score=83.13 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCC--cc
Q 013789 178 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP--LK 254 (436)
Q Consensus 178 ~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~--~~ 254 (436)
.++-+.+++..++... +.||+||+-.+... .+ ++. -+.++|+|.|+|.|... |++.+....+.. +.
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v-g~---ia~----gvaka~aD~I~IdG~~G---GTGAap~~~~~~~GlP 1047 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGV-GT---IAT----GVAKAYADLITISGYDG---GTGASPLTSVKYAGSP 1047 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCc-cH---HHh----ChhhcCCCEEEEeCCCC---CcccccHHHHhhCCcc
Confidence 4567788888888755 68999999875222 22 222 22358999999998764 332221111111 11
Q ss_pred HHH-HH----HHHhcC--CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 255 YEY-YY----ALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 255 ~~~-v~----~l~~~~--~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
|++ +. .+++.- -+|.|++.||+.++.|+..++.+|||.|.+||++|-
T Consensus 1048 ~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~li 1101 (1485)
T PRK11750 1048 WELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMV 1101 (1485)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHH
Confidence 333 21 222221 259999999999999999999999999999999874
No 154
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.79 E-value=7e-05 Score=71.89 Aligned_cols=77 Identities=18% Similarity=0.341 Sum_probs=60.4
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
.+++. ++.+++-.+.....|. +.+++.+.++.+.. ++||++.|||.+.+|++++++.||+.|.+|++++
T Consensus 38 ~~~~~-~~~l~ivDldga~~g~---------~~n~~~i~~i~~~~-~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 38 RFSEY-VDKIHVVDLDGAFEGK---------PKNLDVVKNIIRET-GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred HHHHh-CCEEEEEECcchhcCC---------cchHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 34456 8999886665433332 12378888888764 8999999999999999999999999999999999
Q ss_pred hCCcchhhhh
Q 013789 301 QNPWYTLGHV 310 (436)
Q Consensus 301 ~~P~lf~~~~ 310 (436)
||.++ +++
T Consensus 107 -~~~~l-~~~ 114 (228)
T PRK04128 107 -DLEFL-EKV 114 (228)
T ss_pred -CHHHH-HHH
Confidence 99974 443
No 155
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.76 E-value=0.00072 Score=62.92 Aligned_cols=147 Identities=18% Similarity=0.274 Sum_probs=89.8
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCC----ccccCC----CccccccCChHHHHHHHH---------
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP----KVAGHG----CFGVSLMLDPKFVGEAMS--------- 187 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~----~v~r~g----~yG~~Ll~~~~~l~eiv~--------- 187 (436)
.|++.=+-+.++++....++.+.+.|++.|++..-.|.. +..++. .-|+...-+.+.+.+.+.
T Consensus 4 ~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 455555777788888888888888888888886543310 000000 013333333333333322
Q ss_pred --------HHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHH
Q 013789 188 --------VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (436)
Q Consensus 188 --------av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~ 259 (436)
+.++ .+.++. +|.. +.+|+.+ +.+.|+|+|-+.... +...+++.
T Consensus 84 ~~~~~~~~~~~~-~~~~~i----~gv~---t~~e~~~-----A~~~Gad~i~~~p~~---------------~~g~~~~~ 135 (190)
T cd00452 84 GLDPEVVKAANR-AGIPLL----PGVA---TPTEIMQ-----ALELGADIVKLFPAE---------------AVGPAYIK 135 (190)
T ss_pred CCCHHHHHHHHH-cCCcEE----CCcC---CHHHHHH-----HHHCCCCEEEEcCCc---------------ccCHHHHH
Confidence 2111 233322 2333 3444332 235899999874311 11256777
Q ss_pred HHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 260 ~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
.+...++++|+++.||| +.+.+.++++.|+++|.+|+++.
T Consensus 136 ~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 136 ALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 77666667999999999 99999999999999999999987
No 156
>PLN02591 tryptophan synthase
Probab=97.76 E-value=0.0011 Score=64.52 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc-----ccCCCcccccc--CChHHHHHHHHHHhhccCCcEEEEec----
Q 013789 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKV-----AGHGCFGVSLM--LDPKFVGEAMSVIAANTNVPVSVKCR---- 202 (436)
Q Consensus 134 ~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v-----~r~g~yG~~Ll--~~~~~l~eiv~av~~~~~iPvsvKiR---- 202 (436)
.+.+...+.++.+.+.|+|.|||.+=...+.. ++.. --+|. -+.+.+.++++.+|+..++|+.+-.=
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~--~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i 90 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAA--TRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPI 90 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHH--HHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence 35677888888888999999999754332210 0000 00111 24567788888888777888643211
Q ss_pred --------------cCCCC----CCcHHHHHHHHHHHhhcCCccEEEEc-cCccc------------------ccCCCCC
Q 013789 203 --------------IGVDD----HDSYNQLCDFIYKVSSLSPTRHFIIH-SRKAL------------------LNGISPA 245 (436)
Q Consensus 203 --------------~G~~~----~~~~~~~~~~la~~~e~~Gvd~I~vh-grt~~------------------~~G~~~~ 245 (436)
.|.+. .-.+++..++ ...+++.|++.|.+- .-+.. ..|.++.
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~-~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~ 169 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEAL-RAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA 169 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHH-HHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC
Confidence 11110 0012233222 223344555555442 11100 0122222
Q ss_pred CCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 246 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 246 ~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
. ..++..-.+.+..+++ ..++||+..-||.++++++++++.|||||.+|++++.
T Consensus 170 ~-~~~~~~~~~~i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 170 R-ASVSGRVESLLQELKE-VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred C-cCCchhHHHHHHHHHh-cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 1 1122211334555555 4699999999999999999999999999999999973
No 157
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.76 E-value=0.00015 Score=69.72 Aligned_cols=183 Identities=15% Similarity=0.144 Sum_probs=103.8
Q ss_pred HHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Q 013789 82 NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCP 161 (436)
Q Consensus 82 ~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP 161 (436)
..+.......| +..++-=-+... .....+..-+.++.. ...+-+|+.|.--. +..+.+ +-++|++-+-||
T Consensus 38 ~~~a~~~~~~g-~~~l~i~DLd~~--~~~~~n~~~i~~i~~-~~~~~v~vgGGir~-~edv~~-~l~~Ga~~viig---- 107 (233)
T cd04723 38 LDVARAYKELG-FRGLYIADLDAI--MGRGDNDEAIRELAA-AWPLGLWVDGGIRS-LENAQE-WLKRGASRVIVG---- 107 (233)
T ss_pred HHHHHHHHHCC-CCEEEEEeCccc--cCCCccHHHHHHHHH-hCCCCEEEecCcCC-HHHHHH-HHHcCCCeEEEc----
Confidence 34555556664 666654444432 112222222222211 11245788774322 222333 345687765443
Q ss_pred CCccccCCCccccccCChHHHHHHHHHHhh-ccCCcEEEEeccC---C-CCCCcHHHHHHHHHHHhhcCCccEEEEccCc
Q 013789 162 SPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIG---V-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (436)
Q Consensus 162 ~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~-~~~iPvsvKiR~G---~-~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt 236 (436)
+....+ +++.++++...+ .+-+-+.+ +-| + ....+..++++ .+++. ++.+++..-.
T Consensus 108 -----------t~~~~~-~~~~~~~~~~~~~~iivslD~--~~~~~~~~~~~~~~~~~~~----~~~~~-~~~li~~di~ 168 (233)
T cd04723 108 -----------TETLPS-DDDEDRLAALGEQRLVLSLDF--RGGQLLKPTDFIGPEELLR----RLAKW-PEELIVLDID 168 (233)
T ss_pred -----------ceeccc-hHHHHHHHhcCCCCeEEEEec--cCCeeccccCcCCHHHHHH----HHHHh-CCeEEEEEcC
Confidence 344466 888888888744 22122333 222 1 11223444433 33456 8888876443
Q ss_pred ccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 237 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 237 ~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
.. |.. ...+++.+.++.+.. ++||++.|||.+.+|+.++++.|+++|.+|++++..-
T Consensus 169 ~~--G~~-------~g~~~~~~~~i~~~~-~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 169 RV--GSG-------QGPDLELLERLAARA-DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred cc--ccC-------CCcCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcCC
Confidence 21 211 112377888887764 8999999999999999999999999999999998763
No 158
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.74 E-value=0.0012 Score=64.42 Aligned_cols=167 Identities=17% Similarity=0.161 Sum_probs=97.3
Q ss_pred cEEEEEcCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCcccccc----------CChHHHHHHHHHHh-hc
Q 013789 126 PIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM----------LDPKFVGEAMSVIA-AN 192 (436)
Q Consensus 126 pi~vQL~g~--~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll----------~~~~~l~eiv~av~-~~ 192 (436)
.++.=+... +.+...+++..+.+.|+|.|||.+=...+.. | |--.. -+.+.+.++++.++ +.
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~a---D--GpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~ 87 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVA---D--GPVIQAASLRALAAGVTLADVFELVREIREKD 87 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcc---c--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 355555544 5578888888888999999999764332211 1 11111 24566788888888 45
Q ss_pred cCCcEEEEecc------CCCC----------------CCcHHHHHHHHHHHhhcCCccEEE-EccCcc------------
Q 013789 193 TNVPVSVKCRI------GVDD----------------HDSYNQLCDFIYKVSSLSPTRHFI-IHSRKA------------ 237 (436)
Q Consensus 193 ~~iPvsvKiR~------G~~~----------------~~~~~~~~~~la~~~e~~Gvd~I~-vhgrt~------------ 237 (436)
.++|+.+-.=. |.+. .-..++..++ ...+.+.|.+.|. +...+.
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~-~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~ 166 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEEL-RAAAKKHGLDLIFLVAPTTTDERLKKIASHAS 166 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHH-HHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 68886443211 1110 0012233222 2233456666655 222220
Q ss_pred ------cccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 238 ------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 238 ------~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
...|.++.. ...+..-.+.+..+.+. .++||+..+||.+++++.++++. ||||.+|++++.
T Consensus 167 gfIY~vs~~GvTG~~-~~~~~~~~~~i~~vk~~-~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 167 GFVYYVSRAGVTGAR-SADAADLAELVARLKAH-TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred CcEEEEeCCCCCCcc-cCCCccHHHHHHHHHhc-CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 001322221 11222224466666664 48999999999999999999985 999999999873
No 159
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.74 E-value=0.0011 Score=61.90 Aligned_cols=38 Identities=26% Similarity=0.493 Sum_probs=34.4
Q ss_pred CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 267 ~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
++||++.|||.. +++.++++.|+|+|.+||+++..++.
T Consensus 166 ~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~~ 203 (211)
T cd00429 166 NLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDDY 203 (211)
T ss_pred CeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCCH
Confidence 489999999985 99999999999999999999987764
No 160
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.72 E-value=0.0013 Score=61.77 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=103.5
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecc--ccchhhhhcccchhhhhccCCCCCcEEEEEcCCC-HHHHHHHHHHHHHCCCCE
Q 013789 77 MDWTDNHYRTLARLISKHAWLYTEM--LAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN-LDNLAKATELANAYNYDE 153 (436)
Q Consensus 77 agvtd~~fr~~~~~~Gg~gl~~tem--v~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~-p~~~~~aA~~~~~~G~d~ 153 (436)
+|.++..-...+.+.| ++++.-=+ -+++.+. ......+.+..+. ..-.|-++-++ ++ ...+++.+.|+|+
T Consensus 4 CGi~~~ed~~~a~~~G-vd~ig~i~~~~s~R~v~--~~~a~~l~~~~~~-~~~~V~v~vn~~~~---~i~~ia~~~~~d~ 76 (203)
T cd00405 4 CGITTLEDALAAAEAG-ADAIGFIFAPKSPRYVS--PEQAREIVAALPP-FVKRVGVFVNEDLE---EILEIAEELGLDV 76 (203)
T ss_pred CCCCCHHHHHHHHHcC-CCEEEEecCCCCCCCCC--HHHHHHHHHhCCC-CCcEEEEEeCCCHH---HHHHHHHhcCCCE
Confidence 5788888877777765 55443211 1222220 1112223332222 12334445444 34 3445667789999
Q ss_pred EEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEc
Q 013789 154 INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 233 (436)
Q Consensus 154 IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vh 233 (436)
|.||-.- .++ .++.+++..+.++...+.. ...... +. . .....|+|++.+.
T Consensus 77 Vqlhg~e-----------------~~~----~~~~l~~~~~~~~i~~i~~--~~~~~~-~~----~-~~~~~~aD~il~d 127 (203)
T cd00405 77 VQLHGDE-----------------SPE----YCAQLRARLGLPVIKAIRV--KDEEDL-EK----A-AAYAGEVDAILLD 127 (203)
T ss_pred EEECCCC-----------------CHH----HHHHHHhhcCCcEEEEEec--CChhhH-HH----h-hhccccCCEEEEc
Confidence 9998321 122 2344444446665533443 221111 11 1 1234789999886
Q ss_pred cCccccc-CCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcC-CCeeeehHHHHhCCcc
Q 013789 234 SRKALLN-GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWY 305 (436)
Q Consensus 234 grt~~~~-G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~l 305 (436)
..+.... |.+ .+.+|+.+.++. .++||++.||| +++.+.++++.+ +++|-+.+++...|-.
T Consensus 128 t~~~~~~Gg~g-------~~~~~~~l~~~~---~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 128 SKSGGGGGGTG-------KTFDWSLLRGLA---SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCCCCCCCCCc-------ceEChHHhhccc---cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 5544221 121 233477776554 37999999999 999999999977 9999999999887763
No 161
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=97.70 E-value=0.0014 Score=66.66 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=98.5
Q ss_pred CCCcEEEEEcCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEE
Q 013789 123 EQHPIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVS 198 (436)
Q Consensus 123 ~~~pi~vQL~g~--~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvs 198 (436)
...|+...+... +++.+.+.++.+.+.||+.+.|..|..... + ++++...++++++++.++ +++.
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-------~----~~~~~d~~~v~~ir~~~g~~~~l~ 193 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG-------G----EDLREDLARVRAVREAVGPDVDLM 193 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-------h----HHHHHHHHHHHHHHHhhCCCCEEE
Confidence 334555555544 589999999988899999999998754321 1 678888999999999874 6677
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCC
Q 013789 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 278 (436)
Q Consensus 199 vKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s 278 (436)
+...-+|+ .++..++ .+.+++.++++|.- .+++.+++....+.+.. ++||++...+.+
T Consensus 194 vDaN~~~~----~~~a~~~-~~~l~~~~i~~iEq----------------P~~~~~~~~~~~l~~~~-~ipi~~dE~~~~ 251 (357)
T cd03316 194 VDANGRWD----LAEAIRL-ARALEEYDLFWFEE----------------PVPPDDLEGLARLRQAT-SVPIAAGENLYT 251 (357)
T ss_pred EECCCCCC----HHHHHHH-HHHhCccCCCeEcC----------------CCCccCHHHHHHHHHhC-CCCEEecccccc
Confidence 76655664 3344443 34456677766541 11122366666676664 899999999999
Q ss_pred HHHHHHHHH-cCCCeeee
Q 013789 279 VDEVNAALR-KGAHHVMV 295 (436)
Q Consensus 279 ~~da~~~l~-~Gad~Vmi 295 (436)
++++.++++ ..+|.|++
T Consensus 252 ~~~~~~~i~~~~~d~v~~ 269 (357)
T cd03316 252 RWEFRDLLEAGAVDIIQP 269 (357)
T ss_pred HHHHHHHHHhCCCCEEec
Confidence 999999998 55888874
No 162
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.67 E-value=0.00016 Score=69.94 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=63.3
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.|++-.-.+.. |. ..+.+.+.++.+.+ ++||.+-|||.|.+|+++++..||+.|.+|++
T Consensus 38 a~~~~~~g~~~l~ivDLd~~~-g~---------~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~ 106 (241)
T PRK14024 38 ALAWQRDGAEWIHLVDLDAAF-GR---------GSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGTA 106 (241)
T ss_pred HHHHHHCCCCEEEEEeccccC-CC---------CccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 445567999999986544321 21 12378888888876 89999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.||.++.
T Consensus 107 ~l~~p~l~~ 115 (241)
T PRK14024 107 ALENPEWCA 115 (241)
T ss_pred HhCCHHHHH
Confidence 999999864
No 163
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.65 E-value=0.0011 Score=62.88 Aligned_cols=137 Identities=14% Similarity=0.157 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHH
Q 013789 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~ 214 (436)
.+.-..-++.+.+.|+|.||+-+- ||.-...+.+.+.+-+.++++.+ ++|+-|-+-.+.-. -+++
T Consensus 69 ~~~K~~E~~~Av~~GAdEiDvv~n-----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~---~~ei 134 (211)
T TIGR00126 69 TDVKLYETKEAIKYGADEVDMVIN-----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLT---DEEI 134 (211)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecc-----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCC---HHHH
Confidence 344444456677889999998642 23333356677787788888765 56666645544422 1334
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeee
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~Vm 294 (436)
. ...+++.++|+|.|-... |..+.. ..+.+...+.+.++. .+||-++|||.|.+++.++++.||+-+.
T Consensus 135 ~-~a~~ia~eaGADfvKTsT------Gf~~~g---at~~dv~~m~~~v~~--~v~IKaaGGirt~~~a~~~i~aGa~riG 202 (211)
T TIGR00126 135 R-KACEICIDAGADFVKTST------GFGAGG---ATVEDVRLMRNTVGD--TIGVKASGGVRTAEDAIAMIEAGASRIG 202 (211)
T ss_pred H-HHHHHHHHhCCCEEEeCC------CCCCCC---CCHHHHHHHHHHhcc--CCeEEEeCCCCCHHHHHHHHHHhhHHhC
Confidence 3 345677789999998652 211100 011123334444443 6999999999999999999999988765
Q ss_pred ehHH
Q 013789 295 VGRA 298 (436)
Q Consensus 295 iGRa 298 (436)
..++
T Consensus 203 ts~~ 206 (211)
T TIGR00126 203 ASAG 206 (211)
T ss_pred cchH
Confidence 5433
No 164
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.64 E-value=0.00024 Score=67.84 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=63.6
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.+++....+...|. ..+++.+.++.+.. ++||...|||.+.++++++++.|||.|.+|+.
T Consensus 34 a~~~~~~g~~~l~v~dl~~~~~g~---------~~~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~ 103 (230)
T TIGR00007 34 AKKWEEEGAERIHVVDLDGAKEGG---------PVNLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA 103 (230)
T ss_pred HHHHHHcCCCEEEEEeCCccccCC---------CCcHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH
Confidence 445678999999997555432221 12377788887765 89999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.+|.++.
T Consensus 104 ~l~d~~~~~ 112 (230)
T TIGR00007 104 AVENPDLVK 112 (230)
T ss_pred HhhCHHHHH
Confidence 999998754
No 165
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.61 E-value=0.00027 Score=67.88 Aligned_cols=132 Identities=21% Similarity=0.401 Sum_probs=80.2
Q ss_pred EEEEEcC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec--
Q 013789 127 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR-- 202 (436)
Q Consensus 127 i~vQL~g--~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR-- 202 (436)
+-+|+.| ++.++..++ .+.|++.+-+ |.+.. +|+++.++.+..-+ +-+++=.|
T Consensus 74 ~pv~~gGGIrs~edv~~l----~~~G~~~viv---------------Gtaa~-~~~~l~~~~~~~g~---ivvslD~~~g 130 (228)
T PRK04128 74 LKVQVGGGLRTYESIKDA----YEIGVENVII---------------GTKAF-DLEFLEKVTSEFEG---ITVSLDVKGG 130 (228)
T ss_pred CCEEEcCCCCCHHHHHHH----HHCCCCEEEE---------------Cchhc-CHHHHHHHHHHcCC---EEEEEEccCC
Confidence 3456655 456654433 3458887633 44445 78988888776522 22222222
Q ss_pred ----cCCCCCC--cHHHHHHHHHHHhhcCCccEEEEccC--cccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 203 ----IGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 203 ----~G~~~~~--~~~~~~~~la~~~e~~Gvd~I~vhgr--t~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
-||.+.. +..++.+ .+++. +..|.++.- ....+| ++ .+.+..+++|||++|
T Consensus 131 ~v~~~gw~~~~~~~~~~~~~----~~~~~-~~~ii~t~i~~dGt~~G-------------~d---~l~~~~~~~pviasG 189 (228)
T PRK04128 131 RIAVKGWLEESSIKVEDAYE----MLKNY-VNRFIYTSIERDGTLTG-------------IE---EIERFWGDEEFIYAG 189 (228)
T ss_pred eEecCCCeEcCCCCHHHHHH----HHHHH-hCEEEEEeccchhcccC-------------HH---HHHHhcCCCCEEEEC
Confidence 2454322 2334433 33444 667777643 322222 12 233333589999999
Q ss_pred CCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 275 GINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 275 gI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
||.+.+|+.++.+.|+++|.+|++++..
T Consensus 190 Gv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 190 GVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 9999999999999999999999998655
No 166
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.59 E-value=0.0039 Score=59.76 Aligned_cols=147 Identities=14% Similarity=0.240 Sum_probs=89.8
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~g-cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi 201 (436)
.+.++.+-|..++|+++.+.+ .++|+|+|-+|.+ +.. +...+.++.+++. +.-+.+-+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~---~~~gad~v~vH~~q~~~-----------------d~~~~~~~~i~~~-g~~iGls~ 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF---AKAGASIFTFHIEQAST-----------------IHLHRLIQQIKSA-GMKAGVVL 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH---HHcCCCEEEEeeccccc-----------------hhHHHHHHHHHHC-CCeEEEEE
Confidence 556789999999999876544 5679999999877 221 1133444554432 32222222
Q ss_pred ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHH
Q 013789 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (436)
Q Consensus 202 R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~d 281 (436)
... ... +.. ..+++..|+|+|.+-+-.. |.+.. ...+..++.+.++.+...++||.+-||| +.+.
T Consensus 123 --~~~--t~~-~~~---~~~~~~~~~Dyi~~~~v~p---g~~~~---~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~ 187 (229)
T PLN02334 123 --NPG--TPV-EAV---EPVVEKGLVDMVLVMSVEP---GFGGQ---SFIPSMMDKVRALRKKYPELDIEVDGGV-GPST 187 (229)
T ss_pred --CCC--CCH-HHH---HHHHhccCCCEEEEEEEec---CCCcc---ccCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHH
Confidence 111 112 222 2233322399995522111 21111 1123335666666665457899999999 7999
Q ss_pred HHHHHHcCCCeeeehHHHHhCCcc
Q 013789 282 VNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 282 a~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+.++.+.|||+|.+|++++..++.
T Consensus 188 i~~l~~aGad~vvvgsai~~~~d~ 211 (229)
T PLN02334 188 IDKAAEAGANVIVAGSAVFGAPDY 211 (229)
T ss_pred HHHHHHcCCCEEEEChHHhCCCCH
Confidence 999999999999999998876663
No 167
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=97.59 E-value=0.0044 Score=60.51 Aligned_cols=134 Identities=15% Similarity=0.101 Sum_probs=94.3
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEE
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVK 200 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvK 200 (436)
+.-|+...+...+++.+.+.++.+.+.||..+.++.| .+++.-.+.+++|++.++ +++.+.
T Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg-----------------~~~~~d~~~v~~vr~~~g~~~~l~vD 135 (265)
T cd03315 73 DRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG-----------------RDPARDVAVVAALREAVGDDAELRVD 135 (265)
T ss_pred CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC-----------------CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3456677777778888888888888889999988764 123555678888888764 556666
Q ss_pred eccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHH
Q 013789 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (436)
Q Consensus 201 iR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~ 280 (436)
...+|+ .++..++ .+.+++.|+++|.- . +++.+++...++.+.. ++||.+.+.+.+..
T Consensus 136 an~~~~----~~~a~~~-~~~l~~~~i~~iEe----P------------~~~~d~~~~~~l~~~~-~ipia~dE~~~~~~ 193 (265)
T cd03315 136 ANRGWT----PKQAIRA-LRALEDLGLDYVEQ----P------------LPADDLEGRAALARAT-DTPIMADESAFTPH 193 (265)
T ss_pred CCCCcC----HHHHHHH-HHHHHhcCCCEEEC----C------------CCcccHHHHHHHHhhC-CCCEEECCCCCCHH
Confidence 555664 3344443 34556788888752 1 1122366666777664 89999999999999
Q ss_pred HHHHHHH-cCCCeeee
Q 013789 281 EVNAALR-KGAHHVMV 295 (436)
Q Consensus 281 da~~~l~-~Gad~Vmi 295 (436)
++.++++ ..+|.|++
T Consensus 194 ~~~~~i~~~~~d~v~~ 209 (265)
T cd03315 194 DAFRELALGAADAVNI 209 (265)
T ss_pred HHHHHHHhCCCCEEEE
Confidence 9999998 56898875
No 168
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.57 E-value=0.011 Score=57.26 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=121.8
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccc-----hhhhhc-----cCCCCCcEEEEEc--CCCHHHHHHHH
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGN-----LDRFLA-----FSPEQHPIVLQIG--GSNLDNLAKAT 143 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~-----~~~~~~-----~~~~~~pi~vQL~--g~~p~~~~~aA 143 (436)
|.++-|..-.+++...| ...+++.-....... +.+. .+.++. ......|+++-+= ..+++...+.+
T Consensus 13 ~~~~~D~~sA~~~e~~G-~~ai~~s~~~~~~s~-G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v 90 (243)
T cd00377 13 LPGAWDALSARLAERAG-FKAIYTSGAGVAASL-GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTV 90 (243)
T ss_pred ecCCCCHHHHHHHHHcC-CCEEEeccHHHHHhc-CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHH
Confidence 55788888888888875 666665533222111 1111 111111 1234678887652 23668888889
Q ss_pred HHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEeccCC--CCCCcHHHHHHHHH
Q 013789 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGV--DDHDSYNQLCDFIY 219 (436)
Q Consensus 144 ~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR~G~--~~~~~~~~~~~~la 219 (436)
+.+.+.|+++|.|.=+...++ .|..|..-+-.++...+.+++++++.+ .++.|--|... ......++.++. +
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~---~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~R-a 166 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKK---CGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIER-A 166 (243)
T ss_pred HHHHHcCCEEEEEecCCCCcc---ccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHH-H
Confidence 988899999999976544322 233454545566767777777776543 24555555321 111245565654 4
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCC-HHHHHHHHHcCCCeeeehHH
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s-~~da~~~l~~Gad~VmiGRa 298 (436)
+...++|+|.+-+++-+ ..+.+.++.+.. ++||+.+--=.. .-...++.+.|+..|.+|-.
T Consensus 167 ~ay~~AGAD~v~v~~~~-----------------~~~~~~~~~~~~-~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~ 228 (243)
T cd00377 167 KAYAEAGADGIFVEGLK-----------------DPEEIRAFAEAP-DVPLNVNMTPGGNLLTVAELAELGVRRVSYGLA 228 (243)
T ss_pred HHHHHcCCCEEEeCCCC-----------------CHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHCCCeEEEEChH
Confidence 56678999999998643 156777887774 789887721111 12344555689999998876
Q ss_pred HHh
Q 013789 299 AYQ 301 (436)
Q Consensus 299 ~l~ 301 (436)
++.
T Consensus 229 ~~~ 231 (243)
T cd00377 229 LLR 231 (243)
T ss_pred HHH
Confidence 643
No 169
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.56 E-value=0.003 Score=59.43 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHH
Q 013789 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~ 214 (436)
.+....-++.+.+.|+|+||+.+- +|..+-.+.+.+.+-+.++++.+ ++|+-+-+-.+... .+++
T Consensus 68 ~~~k~~eve~A~~~GAdevdvv~~-----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~---~~~i 133 (203)
T cd00959 68 TEVKVAEAREAIADGADEIDMVIN-----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLT---DEEI 133 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeec-----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC---HHHH
Confidence 354555577788889999998642 12222245566666666776654 56655533443322 2233
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCee
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~V 293 (436)
....+++.++|+|.|-.. | |..+.. -.+.+...+.+.++ ..+||-++|||.|.+++.++++.||+-+
T Consensus 134 -~~a~ria~e~GaD~IKTs--T----G~~~~~---at~~~v~~~~~~~~--~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 134 -IKACEIAIEAGADFIKTS--T----GFGPGG---ATVEDVKLMKEAVG--GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred -HHHHHHHHHhCCCEEEcC--C----CCCCCC---CCHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 334667778999999875 2 211100 01112333444444 3799999999999999999999998864
No 170
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.55 E-value=0.00031 Score=67.72 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=63.3
Q ss_pred HHHhhc-CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 219 YKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 219 a~~~e~-~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
++.+.+ .|+|.+++---.+...| .+.+++.+.++.+.. ++||..-|||+|.++++++++.||+-|.+|+
T Consensus 37 a~~~~~~~Ga~~l~ivDLd~a~~~---------~~~n~~~I~~i~~~~-~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 37 IAYYSQFECVNRIHIVDLIGAKAQ---------HAREFDYIKSLRRLT-TKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred HHHHHhccCCCEEEEEECcccccC---------CcchHHHHHHHHhhc-CCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 344455 79999998654432112 122478888888864 8999999999999999999999999999999
Q ss_pred HHHhCCcchhhhh
Q 013789 298 AAYQNPWYTLGHV 310 (436)
Q Consensus 298 a~l~~P~lf~~~~ 310 (436)
.++.||.++ +++
T Consensus 107 ~a~~~~~~l-~~~ 118 (234)
T PRK13587 107 KGIQDTDWL-KEM 118 (234)
T ss_pred hHhcCHHHH-HHH
Confidence 999999975 444
No 171
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.55 E-value=0.0055 Score=61.27 Aligned_cols=209 Identities=12% Similarity=0.118 Sum_probs=117.3
Q ss_pred CccccCCeecCCcEEEcCCCCCCh-HHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhcc-CCCCCcEEEEEc-CC
Q 013789 58 KAEMVARQYLPPWFSVAPMMDWTD-NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIG-GS 134 (436)
Q Consensus 58 ~p~~i~~l~l~n~iilAPMagvtd-~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~-~~~~~pi~vQL~-g~ 134 (436)
+++.|++..+..|+++.- ..+.+ ..++...... |+.++ |=.+.-..+.. .....+++. ......+-.|-. |.
T Consensus 73 ~~~~i~~~~~~sRl~~Gt-g~y~s~~~~~~a~~as-g~e~v-Tva~rr~~~~~--~~~~~~~~~~~~~~~~~lpNTag~~ 147 (326)
T PRK11840 73 DSWTVAGKTFSSRLLVGT-GKYKDFEETAAAVEAS-GAEIV-TVAVRRVNVSD--PGAPMLTDYIDPKKYTYLPNTAGCY 147 (326)
T ss_pred CCeEECCEEEecceeEec-CCCCCHHHHHHHHHHh-CCCEE-EEEEEeecCcC--CCcchHHHhhhhcCCEECccCCCCC
Confidence 678899999999998753 33444 4455555555 45433 32222222211 111223332 123333444444 56
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHH
Q 013789 135 NLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~-G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~ 213 (436)
+.++..+.|+++.++ |-++|-|-.--.. -.++.|+..+.+..+.+.+. |+-+.+-+. ++..
T Consensus 148 ta~eAv~~a~lare~~~~~~iKlEvi~e~----------~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~------~d~~- 209 (326)
T PRK11840 148 TAEEAVRTLRLAREAGGWDLVKLEVLGDA----------KTLYPDMVETLKATEILVKE-GFQVMVYCS------DDPI- 209 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCC----------CCcccCHHHHHHHHHHHHHC-CCEEEEEeC------CCHH-
Confidence 789999999999886 5578777532111 12334444444333333221 333322221 1221
Q ss_pred HHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCee
Q 013789 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~V 293 (436)
. ++.+++.|+ +.|..-...- |.+ ++..+-+.+..+++. +++|||.-+||.+++|+.++++.|||+|
T Consensus 210 ~----a~~l~~~g~--~avmPl~~pI-Gsg------~gv~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgV 275 (326)
T PRK11840 210 A----AKRLEDAGA--VAVMPLGAPI-GSG------LGIQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGV 275 (326)
T ss_pred H----HHHHHhcCC--EEEeeccccc-cCC------CCCCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 1 445567898 3343311100 211 111135667777776 4899999999999999999999999999
Q ss_pred eehHHHHhCC
Q 013789 294 MVGRAAYQNP 303 (436)
Q Consensus 294 miGRa~l~~P 303 (436)
.+.+|...-+
T Consensus 276 L~nSaIa~a~ 285 (326)
T PRK11840 276 LMNTAIAEAK 285 (326)
T ss_pred EEcceeccCC
Confidence 9999986433
No 172
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.53 E-value=0.0014 Score=61.45 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=96.3
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEe-cCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEE
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINL-NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdL-N~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvK 200 (436)
.+-|+.|. +-+|+.|..+ .++|+|.||| |+-|-+.. |. .-..+.+.++.+..|+-. ++|++|-
T Consensus 60 s~lPICVS--aVep~~f~~a----V~AGAdliEIGNfDsFY~q----Gr-----~f~a~eVL~Lt~~tR~LLP~~~LsVT 124 (242)
T PF04481_consen 60 SNLPICVS--AVEPELFVAA----VKAGADLIEIGNFDSFYAQ----GR-----RFSAEEVLALTRETRSLLPDITLSVT 124 (242)
T ss_pred CCCCeEee--cCCHHHHHHH----HHhCCCEEEecchHHHHhc----CC-----eecHHHHHHHHHHHHHhCCCCceEEe
Confidence 56787764 5688888754 4579999999 55554432 11 134567888888888754 6777776
Q ss_pred eccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccc---cCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC
Q 013789 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (436)
Q Consensus 201 iR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~---~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~ 277 (436)
+.--..- + +-.+ ++..+++.|+|.|.--|.+... .|..+--....+ .+...+.+.+.+ ++||+.+-||.
T Consensus 125 VPHiL~l-d---~Qv~-LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaap--TLAaay~ISr~v-~iPVlcASGlS 196 (242)
T PF04481_consen 125 VPHILPL-D---QQVQ-LAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAP--TLAAAYAISRAV-SIPVLCASGLS 196 (242)
T ss_pred cCccccH-H---HHHH-HHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhH--HHHHHHHHHhcc-CCceEeccCcc
Confidence 5543322 1 2122 3456678999999887766321 111110000111 144556666664 99999999996
Q ss_pred CHHHHHHHHHcCCCeeeehHHH
Q 013789 278 TVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 278 s~~da~~~l~~Gad~VmiGRa~ 299 (436)
+. .+--++..||.||.||.+.
T Consensus 197 ~v-T~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 197 AV-TAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred hh-hHHHHHHcCCcccchhHHh
Confidence 64 4455667899999999976
No 173
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.53 E-value=0.0024 Score=62.64 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=89.2
Q ss_pred CCcEEEEEcCCC-----H--HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh---cc
Q 013789 124 QHPIVLQIGGSN-----L--DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NT 193 (436)
Q Consensus 124 ~~pi~vQL~g~~-----p--~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~---~~ 193 (436)
+.++++.+.+.. + +.+...++.+.+.|+|.|++..-.... ..+.+.+.+.++++ ..
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~g~~--------------~~~~~~~~~~~v~~~~~~~ 138 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVNVGSE--------------TEAEMLEDLGEVAEECEEW 138 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEecCCh--------------hHHHHHHHHHHHHHHHHHc
Confidence 455666655211 1 334445667788899998875311110 01223444444443 34
Q ss_pred CCcEEEEec-cCCC--CCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEE
Q 013789 194 NVPVSVKCR-IGVD--DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (436)
Q Consensus 194 ~iPvsvKiR-~G~~--~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPV 270 (436)
++|+-+-.. .|.. ...+.+++.. ..+++.+.|+|+|-.. +.| ..+.+.++++.. .+||
T Consensus 139 g~pl~vi~~~~g~~~e~~~~~~~i~~-a~~~a~e~GAD~vKt~-----~~~------------~~~~l~~~~~~~-~ipV 199 (267)
T PRK07226 139 GMPLLAMMYPRGPGIKNEYDPEVVAH-AARVAAELGADIVKTN-----YTG------------DPESFREVVEGC-PVPV 199 (267)
T ss_pred CCcEEEEEecCCCccCCCccHHHHHH-HHHHHHHHCCCEEeeC-----CCC------------CHHHHHHHHHhC-CCCE
Confidence 888766321 1211 1112223332 3455667999999653 111 156666776654 7999
Q ss_pred EEeCCCC--CHHHHHHHH----HcCCCeeeehHHHHhCCc
Q 013789 271 TLNGGIN--TVDEVNAAL----RKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 271 IanGgI~--s~~da~~~l----~~Gad~VmiGRa~l~~P~ 304 (436)
++.|||. +.+++.+++ +.||+|+.+||.++..|+
T Consensus 200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence 9999999 888888886 699999999999998877
No 174
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.51 E-value=0.0086 Score=57.09 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=122.6
Q ss_pred hHHHHHHH-HHcCCCcEEEeccccchhhhhcccc-hhhhh-----c-cCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCC
Q 013789 81 DNHYRTLA-RLISKHAWLYTEMLAAETIIYQQGN-LDRFL-----A-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYD 152 (436)
Q Consensus 81 d~~fr~~~-~~~Gg~gl~~temv~~~~l~~~~~~-~~~~~-----~-~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d 152 (436)
|...+.+. -+-||++-++.|-.-..+....... +-..+ + ...-..|+++|+.-|++- .|..++...|.|
T Consensus 34 d~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~v---aA~~IA~a~gA~ 110 (263)
T COG0434 34 DRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAV---AALAIAYAVGAD 110 (263)
T ss_pred HHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccH---HHHHHHHhcCCC
Confidence 56666665 3568899888886665544332111 11111 0 123468999999998875 355667778999
Q ss_pred EEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCC--cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEE
Q 013789 153 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 230 (436)
Q Consensus 153 ~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i--PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I 230 (436)
+|-.|.-|-.- . +++ | -++-+...+.+....+.+.+.+ .+-||...-..+ .++++. +...++..++|++
T Consensus 111 FIRVN~~tg~~-~--tdq-G-iieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~-~~~~~~---v~dtver~~aDaV 181 (263)
T COG0434 111 FIRVNVLTGAY-A--TDQ-G-IIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGN-RSLEEA---VKDTVERGLADAV 181 (263)
T ss_pred EEEEEeeeceE-e--ccc-c-eecchHHHHHHHHHhccCCcEEEeecchhcccccCC-cCHHHH---HHHHHHccCCCEE
Confidence 99999766552 2 233 2 3334444444554544432221 244555543332 234333 3445677899999
Q ss_pred EEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 231 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 231 ~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
+++|.+. |.. .+.+.+...++.. ++||++.-|+ +++.+...++. |||+.+|+.+=.+-
T Consensus 182 I~tG~~T---G~~---------~d~~el~~a~~~~-~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 182 IVTGSRT---GSP---------PDLEELKLAKEAV-DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred EEecccC---CCC---------CCHHHHHHHHhcc-CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCC
Confidence 9999765 432 2366666665554 7999999999 78999999987 99999999665443
No 175
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.48 E-value=0.0056 Score=58.74 Aligned_cols=153 Identities=17% Similarity=0.264 Sum_probs=95.6
Q ss_pred cEEEEEcCCCHHHHHHHHHHHHHCCCCE--EEecCC--CCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEE
Q 013789 126 PIVLQIGGSNLDNLAKATELANAYNYDE--INLNCG--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 200 (436)
Q Consensus 126 pi~vQL~g~~p~~~~~aA~~~~~~G~d~--IdLN~g--cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvK 200 (436)
.+.+.|.+.++..+.+-.+.+++.|+|. +|+==| +|+. .+| .++++++++.. ++|+.+|
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~------~~G----------~~~v~~lr~~~~~~~lDvH 71 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL------SFG----------PPVVKSLRKHLPNTFLDCH 71 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc------CcC----------HHHHHHHHhcCCCCCEEEE
Confidence 3667788999999999999999999985 444333 3432 234 35666777765 8999999
Q ss_pred eccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCccc-----------ccCC------CCC-CCCC----C--C-----
Q 013789 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----------LNGI------SPA-ENRT----I--P----- 251 (436)
Q Consensus 201 iR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~-----------~~G~------~~~-~~~~----i--~----- 251 (436)
+-. + +....++ .+.++|+|.+++|+-... ..|. .+. +... + +
T Consensus 72 Lm~--~---~p~~~i~----~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~V 142 (228)
T PTZ00170 72 LMV--S---NPEKWVD----DFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMV 142 (228)
T ss_pred ECC--C---CHHHHHH----HHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhH
Confidence 873 2 2222222 334689999999965310 0110 000 0000 0 0
Q ss_pred ---------------CccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 252 ---------------PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 252 ---------------~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
+..++.+.++.+..+.+.|...||| +.+.+..+.+.|||.+.+||++...++
T Consensus 143 l~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 143 LVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred HhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCC
Confidence 0001223333333345678899999 568899999999999999999876665
No 176
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.47 E-value=0.015 Score=60.09 Aligned_cols=190 Identities=14% Similarity=0.146 Sum_probs=116.5
Q ss_pred CcEEEcCCCCCChHHHHHHHHHcCCC--cE--EEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHH
Q 013789 69 PWFSVAPMMDWTDNHYRTLARLISKH--AW--LYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 69 n~iilAPMagvtd~~fr~~~~~~Gg~--gl--~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~ 144 (436)
+|.++-.+-..+-..-..++++.++. ++ +.|+++...+. +-++.+.+.. .+.++.+-|--+|+..+. ++
T Consensus 172 ~p~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~----~iVk~Lr~~~-~~~~I~~DLK~~Di~~~v--v~ 244 (391)
T PRK13307 172 PPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGL----EVISKIREVR-PDAFIVADLKTLDTGNLE--AR 244 (391)
T ss_pred cceEEEecCCCCHHHHHHHHHhcccccceEEEECHHHHHHhCH----HHHHHHHHhC-CCCeEEEEecccChhhHH--HH
Confidence 34555556555555566667777643 32 23555544432 1223332221 356899999999998765 66
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhc
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 224 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~ 224 (436)
.+.++|+|.+.+|...+. +.+.+.++++++. |+-+.+- -++. .+..+.. ..+ .
T Consensus 245 ~~a~aGAD~vTVH~ea~~-----------------~ti~~ai~~akk~-GikvgVD-~lnp---~tp~e~i---~~l--~ 297 (391)
T PRK13307 245 MAADATADAVVISGLAPI-----------------STIEKAIHEAQKT-GIYSILD-MLNV---EDPVKLL---ESL--K 297 (391)
T ss_pred HHHhcCCCEEEEeccCCH-----------------HHHHHHHHHHHHc-CCEEEEE-EcCC---CCHHHHH---HHh--h
Confidence 678899999999964221 2355666666554 4333220 1221 1222222 222 4
Q ss_pred CCccEEEEcc-CcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 225 SPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 225 ~Gvd~I~vhg-rt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
.++|.|.+|. .... +. . ..|+-+.++.+...+++|...|||. .+++.++++.|||.+.+||++...+
T Consensus 298 ~~vD~Vllht~vdp~--~~--------~-~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~a~ 365 (391)
T PRK13307 298 VKPDVVELHRGIDEE--GT--------E-HAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAGADILVVGRAITKSK 365 (391)
T ss_pred CCCCEEEEccccCCC--cc--------c-chHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhCCC
Confidence 6899999994 3321 11 1 1256666665544578999999997 8999999999999999999987665
Q ss_pred c
Q 013789 304 W 304 (436)
Q Consensus 304 ~ 304 (436)
+
T Consensus 366 D 366 (391)
T PRK13307 366 D 366 (391)
T ss_pred C
Confidence 5
No 177
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.44 E-value=0.0053 Score=58.61 Aligned_cols=151 Identities=17% Similarity=0.275 Sum_probs=92.7
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHCCCCE--EEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcEEEEecc
Q 013789 127 IVLQIGGSNLDNLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI 203 (436)
Q Consensus 127 i~vQL~g~~p~~~~~aA~~~~~~G~d~--IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPvsvKiR~ 203 (436)
+...|.+.|...+.+-.+.++++|+|. +|+==|+=+++. .|| -++++++++. +++|+.|=+=.
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~----tfg----------~~~i~~i~~~~~~~~~dvHLMv 67 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL----TFG----------APICKALRDYGITAPIDVHLMV 67 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCcc----ccC----------HHHHHHHHHhCCCCCEEEEecc
Confidence 345677888888999999999999995 555434333322 234 3566677765 57887765433
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCccc----------cc---------------------------------
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LN--------------------------------- 240 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~----------~~--------------------------------- 240 (436)
++ .+...+ .+.++|+|.|++|--... ..
T Consensus 68 --~~---p~~~i~----~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~ 138 (220)
T PRK08883 68 --KP---VDRIIP----DFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVN 138 (220)
T ss_pred --CC---HHHHHH----HHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEec
Confidence 22 222222 223588898888854100 00
Q ss_pred -CCCCCCCCCCCCccHHHHHHHHhcC----CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 241 -GISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 241 -G~~~~~~~~i~~~~~~~v~~l~~~~----~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
|.++. ..+ +..++.+.++.+.. .++||.+-|||. .+.+.++.+.|||++.+|++++..++
T Consensus 139 PGfgGq--~fi-~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 139 PGFGGQ--SFI-PHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred CCCCCc--eec-HhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 12111 011 11233444443322 258999999997 89999999999999999999876554
No 178
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.44 E-value=0.0072 Score=57.11 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=87.7
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc-cc--CCCc------cccccCChHHHHHHHHHHhh---
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV-AG--HGCF------GVSLMLDPKFVGEAMSVIAA--- 191 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v-~r--~g~y------G~~Ll~~~~~l~eiv~av~~--- 191 (436)
..+++.=+-+.++++..+.++.+.+.|+..+|+-+--|...- .+ +..| |+.-.-+.+.+...+++=.+
T Consensus 9 ~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 9 KLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV 88 (206)
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence 456676688888999999999888989999988653332100 00 0001 11112222222222221000
Q ss_pred -------------ccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHH
Q 013789 192 -------------NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (436)
Q Consensus 192 -------------~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v 258 (436)
..+.++. +| ..+.+|+.+ +.+.|+|+|.+... .....+++
T Consensus 89 sp~~~~~v~~~~~~~~~~~~----~G---~~t~~E~~~-----A~~~Gad~vk~Fpa---------------~~~G~~~l 141 (206)
T PRK09140 89 TPNTDPEVIRRAVALGMVVM----PG---VATPTEAFA-----ALRAGAQALKLFPA---------------SQLGPAGI 141 (206)
T ss_pred CCCCCHHHHHHHHHCCCcEE----cc---cCCHHHHHH-----HHHcCCCEEEECCC---------------CCCCHHHH
Confidence 0011110 11 112223221 22466666665220 11236777
Q ss_pred HHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 259 YALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 259 ~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
..+.+.++ ++|+++.||| +.+.+.+.+++|+++|.++++++...
T Consensus 142 ~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~ 186 (206)
T PRK09140 142 KALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRPG 186 (206)
T ss_pred HHHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcccc
Confidence 78777765 6999999999 88999999999999999999997643
No 179
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.42 E-value=0.00061 Score=66.56 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=62.2
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.|++.--.+.-.+ ...+++.+.++.+.. ++||++.|||.+.+++.+++..||+.|.+|++
T Consensus 36 a~~~~~~g~~~l~i~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~ 105 (258)
T PRK01033 36 VRIFNEKEVDELIVLDIDASKRG---------SEPNYELIENLASEC-FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTA 105 (258)
T ss_pred HHHHHHcCCCEEEEEECCCCcCC---------CcccHHHHHHHHHhC-CCCEEECCCCCCHHHHHHHHHCCCCEEEEChH
Confidence 44556799999998643321011 112478888888874 89999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.+|.++.
T Consensus 106 ~~~~~~~~~ 114 (258)
T PRK01033 106 ALEDPDLIT 114 (258)
T ss_pred HhcCHHHHH
Confidence 999998753
No 180
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.40 E-value=0.0029 Score=61.27 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=84.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc------------CCCCC
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDDH 208 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~------------G~~~~ 208 (436)
+.|+.+++.|+++|-++.- ...||+++ +-++.+++.+++||-.|==+ |-+-.
T Consensus 65 ~~A~~y~~~GA~aISVlTe--------~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADav 128 (247)
T PRK13957 65 QIAKTYETLGASAISVLTD--------QSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAI 128 (247)
T ss_pred HHHHHHHHCCCcEEEEEcC--------CCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEE
Confidence 4567788999999966521 22356543 33445556668899777222 11100
Q ss_pred ------CcHHHHHHHHHHHhhcCCccEE-EEccCccc----ccC--CCCCCCCCCCC--ccHHHHHHHHhcCC-CcEEEE
Q 013789 209 ------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNG--ISPAENRTIPP--LKYEYYYALLRDFP-DLTFTL 272 (436)
Q Consensus 209 ------~~~~~~~~~la~~~e~~Gvd~I-~vhgrt~~----~~G--~~~~~~~~i~~--~~~~~v~~l~~~~~-~iPVIa 272 (436)
-+.+++.++ ...+...|.+.+ .||...-. ..| .-+-+|+.+.+ .+.....++....+ ++.+|+
T Consensus 129 LLI~~~L~~~~l~~l-~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~Is 207 (247)
T PRK13957 129 LLIVRILTPSQIKSF-LKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVG 207 (247)
T ss_pred EeEHhhCCHHHHHHH-HHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEE
Confidence 001122222 223334555544 34432210 001 01123444433 23455566665554 577899
Q ss_pred eCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 273 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 273 nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
-+||.+++|+.++... +|+|.||++++..++.
T Consensus 208 ESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~ 239 (247)
T PRK13957 208 ESGIESRSDLDKFRKL-VDAALIGTYFMEKKDI 239 (247)
T ss_pred cCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCH
Confidence 9999999999998876 9999999999999885
No 181
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.38 E-value=0.00036 Score=66.98 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=60.5
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.+++.--.+...|. +.+++.+.++.+.. .+||..-|||.+.+|++++++.||+.|.+|+.
T Consensus 35 a~~~~~~g~~~l~ivDLdaa~~g~---------~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 35 AKAFNEQGADELHIVDLDAAKEGR---------GSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGTE 104 (229)
T ss_dssp HHHHHHTT-SEEEEEEHHHHCCTH---------HHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESHH
T ss_pred HHHHHHcCCCEEEEEEccCcccCc---------hhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeChH
Confidence 345578999999986544322121 12477888888876 79999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.||.++.
T Consensus 105 ~~~~~~~l~ 113 (229)
T PF00977_consen 105 ALEDPELLE 113 (229)
T ss_dssp HHHCCHHHH
T ss_pred HhhchhHHH
Confidence 999999853
No 182
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.36 E-value=0.00085 Score=65.32 Aligned_cols=150 Identities=23% Similarity=0.260 Sum_probs=83.0
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec------------cCCC
Q 013789 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------------IGVD 206 (436)
Q Consensus 139 ~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR------------~G~~ 206 (436)
..+.|+..+++|+++|-+..--. .|||++ +-+..+++.+++|+-.|== .|-+
T Consensus 70 ~~~~a~~y~~~GA~aiSVlTe~~--------~F~Gs~--------~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GAD 133 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVLTEPK--------FFGGSL--------EDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGAD 133 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE--SC--------CCHHHH--------HHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-S
T ss_pred HHHHHHHHHhcCCCEEEEECCCC--------CCCCCH--------HHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCC
Confidence 34567778889999998874322 345443 4556667778899988711 1211
Q ss_pred CC------CcHHHHHHHHHHHhhcCCccEE-EEccCcc----cccCC--CCCCCCCCCC--ccHHHHHHHHhcCC-CcEE
Q 013789 207 DH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA----LLNGI--SPAENRTIPP--LKYEYYYALLRDFP-DLTF 270 (436)
Q Consensus 207 ~~------~~~~~~~~~la~~~e~~Gvd~I-~vhgrt~----~~~G~--~~~~~~~i~~--~~~~~v~~l~~~~~-~iPV 270 (436)
-. -+-..+.++ ...+...|.+.+ .||...- ..-|. -+-+++.+.+ .+.....++....+ ++.+
T Consensus 134 aVLLI~~~L~~~~l~~l-~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~ 212 (254)
T PF00218_consen 134 AVLLIAAILSDDQLEEL-LELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIV 212 (254)
T ss_dssp EEEEEGGGSGHHHHHHH-HHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEE
T ss_pred EeehhHHhCCHHHHHHH-HHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeE
Confidence 10 001111221 223334454443 2443321 00110 0123344333 23444555655443 5889
Q ss_pred EEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 271 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 271 IanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
|+-+||.+++|+..+...|+|+|.||++++..|+.
T Consensus 213 iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~ 247 (254)
T PF00218_consen 213 ISESGIKTPEDARRLARAGADAVLVGEALMRSPDP 247 (254)
T ss_dssp EEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSH
T ss_pred EeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence 99999999999999999999999999999999985
No 183
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.33 E-value=0.0014 Score=61.52 Aligned_cols=75 Identities=17% Similarity=0.080 Sum_probs=54.6
Q ss_pred cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 224 ~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
..|+|+|.++.-.. +.+.. ...++..++.+.++++...++||++.||| +.+++.++++.||++|.+|++++.++
T Consensus 122 ~~gaD~v~~~~~~~---~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~ 195 (212)
T PRK00043 122 AAGADYVGVGPIFP---TPTKK--DAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAE 195 (212)
T ss_pred HcCCCEEEECCccC---CCCCC--CCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCC
Confidence 58999999874322 11110 01122237778888776644999999999 78999999999999999999987665
Q ss_pred c
Q 013789 304 W 304 (436)
Q Consensus 304 ~ 304 (436)
.
T Consensus 196 d 196 (212)
T PRK00043 196 D 196 (212)
T ss_pred C
Confidence 5
No 184
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.32 E-value=0.0052 Score=58.04 Aligned_cols=157 Identities=18% Similarity=0.289 Sum_probs=85.9
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCC
Q 013789 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (436)
Q Consensus 127 i~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~ 206 (436)
+.+.|...|+..+.+.++.+.+.|+|.|.+... | |. ...+..+..+.++.+++.+..++.+-+-. +
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~---------d--~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v--~ 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM---------D--GH-FVPNLTIGPPVVEAIRKVTKLPLDVHLMV--E 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc---------c--CC-cCCCcCcCHHHHHHHHhcCCCcEEEEeee--C
Confidence 677888899999999999999999999998421 1 10 00111123455555555443343332221 1
Q ss_pred CCCcHHHHHHHHHHHhhcCCccEEEEccCccc--------c--cCC-------------------------------CCC
Q 013789 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------L--NGI-------------------------------SPA 245 (436)
Q Consensus 207 ~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~--------~--~G~-------------------------------~~~ 245 (436)
+ ..+ ++..+ .++|+|.+++|+.... . .|. .+.
T Consensus 72 d---~~~---~i~~~-~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~ 144 (220)
T PRK05581 72 N---PDR---YVPDF-AKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGF 144 (220)
T ss_pred C---HHH---HHHHH-HHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCC
Confidence 1 111 11222 2578888888765210 0 000 000
Q ss_pred CCCCCCCccHHHHHHHHhcCC--C--cEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 246 ENRTIPPLKYEYYYALLRDFP--D--LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 246 ~~~~i~~~~~~~v~~l~~~~~--~--iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
......+...+.+.++.+... + .+|.+.|||.. +.+.++++.|+|+|.+|++++.+++.
T Consensus 145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d~ 207 (220)
T PRK05581 145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPDY 207 (220)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 000000001122222222211 1 34567899977 89999999999999999999987774
No 185
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.32 E-value=0.012 Score=55.86 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=92.8
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc-----cccC------CCccccccCChHHHHHHHHHHhh
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VAGH------GCFGVSLMLDPKFVGEAMSVIAA 191 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~-----v~r~------g~yG~~Ll~~~~~l~eiv~av~~ 191 (436)
...+++.=|-+.++++....++.+.+.|+..+|+.+-.|... ..++ =..|+.-.-+++.+.+.+++=.+
T Consensus 11 ~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~ 90 (213)
T PRK06552 11 KANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQ 90 (213)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCC
Confidence 456777778899999999999999999999999987654310 0000 01233333344444333322000
Q ss_pred ----------------ccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccH
Q 013789 192 ----------------NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (436)
Q Consensus 192 ----------------~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~ 255 (436)
..++|+. +|. .+.+|+.+ . .+.|+|+|-+..... ...
T Consensus 91 FivsP~~~~~v~~~~~~~~i~~i----PG~---~T~~E~~~----A-~~~Gad~vklFPa~~---------------~G~ 143 (213)
T PRK06552 91 FIVSPSFNRETAKICNLYQIPYL----PGC---MTVTEIVT----A-LEAGSEIVKLFPGST---------------LGP 143 (213)
T ss_pred EEECCCCCHHHHHHHHHcCCCEE----CCc---CCHHHHHH----H-HHcCCCEEEECCccc---------------CCH
Confidence 0112210 111 12223222 1 247777777643111 125
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 256 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 256 ~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
+++..+...++++|+++.||| +.+.+.+.++.|+++|.+|+.++
T Consensus 144 ~~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 144 SFIKAIKGPLPQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred HHHHHHhhhCCCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHh
Confidence 667777777878999999999 58999999999999999999995
No 186
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.30 E-value=0.004 Score=58.69 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=99.7
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc-----ccc---CCCccccccCChHHHHHHHHHHhh---
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VAG---HGCFGVSLMLDPKFVGEAMSVIAA--- 191 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~-----v~r---~g~yG~~Ll~~~~~l~eiv~av~~--- 191 (436)
...+++.=|-+.++++..+.++.+.+.|++.||+.+-.|... ..+ +=..|+.-.-+++.+.+.+++=.+
T Consensus 6 ~~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 6 REAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV 85 (204)
T ss_pred hhCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE
Confidence 356777778899999999999999999999999987655310 000 001244444455555544443100
Q ss_pred -------------ccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHH
Q 013789 192 -------------NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (436)
Q Consensus 192 -------------~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v 258 (436)
..++|+. +|. -+.+|+.. . .++|+|.|-+..-.. .+| -.++
T Consensus 86 sP~~~~~v~~~~~~~~i~~i----PG~---~TptEi~~----A-~~~Ga~~vKlFPA~~-~GG-------------~~yi 139 (204)
T TIGR01182 86 SPGLTPELAKHAQDHGIPII----PGV---ATPSEIML----A-LELGITALKLFPAEV-SGG-------------VKML 139 (204)
T ss_pred CCCCCHHHHHHHHHcCCcEE----CCC---CCHHHHHH----H-HHCCCCEEEECCchh-cCC-------------HHHH
Confidence 0122211 111 12334332 2 248888888865321 111 3566
Q ss_pred HHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 259 ~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
..+..-++++|++..||| +.+.+.+.++.|+.+|.+|+.+....++
T Consensus 140 kal~~plp~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~~~ 185 (204)
T TIGR01182 140 KALAGPFPQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPKDLI 185 (204)
T ss_pred HHHhccCCCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCchhh
Confidence 777777889999999999 6699999999999999999998765543
No 187
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.27 E-value=0.043 Score=54.47 Aligned_cols=206 Identities=11% Similarity=0.079 Sum_probs=119.6
Q ss_pred cEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchh-hhhccc---chhhhhc-----cCCCCCcEEEEE---cCCCHH
Q 013789 70 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLD 137 (436)
Q Consensus 70 ~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~-l~~~~~---~~~~~~~-----~~~~~~pi~vQL---~g~~p~ 137 (436)
..+++| ++-|.-=.+++...| ...++|--..... +...+. ....++. ....+.|+++=+ ||+ +.
T Consensus 13 ~~l~~p--~~~Da~SAri~e~aG-f~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~-~~ 88 (285)
T TIGR02317 13 DILQIP--GAINAMAALLAERAG-FEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGE-AF 88 (285)
T ss_pred CcEEeC--CCCCHHHHHHHHHcC-CCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCC-HH
Confidence 344544 666766666777765 5555544332222 111110 0111111 123567998877 355 99
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcEEEEeccCCCCCCcHHHHHH
Q 013789 138 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCD 216 (436)
Q Consensus 138 ~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPvsvKiR~G~~~~~~~~~~~~ 216 (436)
...+.++.+.++|+.+|.|-=... +| +.|++++.-+-..+...+-+++++++ -+.++.+--|........+++..+
T Consensus 89 ~v~~tv~~~~~aG~agi~IEDq~~-pK--~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~ 165 (285)
T TIGR02317 89 NVARTVREMEDAGAAAVHIEDQVL-PK--RCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIE 165 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCC-cc--ccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHH
Confidence 999999999999999999965432 12 12333333333444444445555553 355566666654332234666666
Q ss_pred HHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe---CCCCCHHHHHHHHHcCCCee
Q 013789 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHV 293 (436)
Q Consensus 217 ~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan---GgI~s~~da~~~l~~Gad~V 293 (436)
. ++...++|+|.|-++|-+. .+.+.++.+.. ++|++.| |+-.-.-++.++.+.|+..|
T Consensus 166 R-a~ay~~AGAD~vfi~g~~~-----------------~e~i~~~~~~i-~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v 226 (285)
T TIGR02317 166 R-AKAYVEAGADMIFPEALTS-----------------LEEFRQFAKAV-KVPLLANMTEFGKTPLFTADELREAGYKMV 226 (285)
T ss_pred H-HHHHHHcCCCEEEeCCCCC-----------------HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEE
Confidence 5 4455679999999986321 45566777776 5788443 33211124556667899999
Q ss_pred eehHHHHh
Q 013789 294 MVGRAAYQ 301 (436)
Q Consensus 294 miGRa~l~ 301 (436)
..|..++.
T Consensus 227 ~~~~~~~~ 234 (285)
T TIGR02317 227 IYPVTAFR 234 (285)
T ss_pred EEchHHHH
Confidence 99976654
No 188
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.27 E-value=0.02 Score=55.83 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=100.6
Q ss_pred cEEEEEcCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCc-----cccCCCcccccc--CChHHHHHHHHHHhh-ccCC
Q 013789 126 PIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPK-----VAGHGCFGVSLM--LDPKFVGEAMSVIAA-NTNV 195 (436)
Q Consensus 126 pi~vQL~g~--~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~-----v~r~g~yG~~Ll--~~~~~l~eiv~av~~-~~~i 195 (436)
-++.=+.+. +++...++++.+.+.|+|.|||.+=...+. +++.. =-+|- -..+.+.++++.+++ ..++
T Consensus 18 a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~--~rAL~~g~t~~~~lel~~~~r~~~~~~ 95 (265)
T COG0159 18 ALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAH--LRALAAGVTLEDTLELVEEIRAKGVKV 95 (265)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHH--HHHHHCCCCHHHHHHHHHHHHhcCCCC
Confidence 355444444 568888999989999999999976433221 11000 00011 356788899999996 4788
Q ss_pred cEEEEecc------------------CCCC---CC-cHHHHHHHHHHHhhcCCccEEEEccCcc----------------
Q 013789 196 PVSVKCRI------------------GVDD---HD-SYNQLCDFIYKVSSLSPTRHFIIHSRKA---------------- 237 (436)
Q Consensus 196 PvsvKiR~------------------G~~~---~~-~~~~~~~~la~~~e~~Gvd~I~vhgrt~---------------- 237 (436)
|+.+-.=. |++. .+ ..++ .+.+.+.+++.|++.|-+-.=+.
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee-~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFi 174 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE-SDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFI 174 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 98765321 1111 00 1112 12234455566776665532110
Q ss_pred ---cccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 238 ---LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 238 ---~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
...|..+..+..... -.+.+.++++ +.++||..-=||.++++++++.+. ||||.+|+++..
T Consensus 175 Y~vs~~GvTG~~~~~~~~-~~~~v~~vr~-~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 175 YYVSRMGVTGARNPVSAD-VKELVKRVRK-YTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred EEEecccccCCCcccchh-HHHHHHHHHH-hcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 011334443321111 1344555544 459999999999999999999999 999999999865
No 189
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.26 E-value=0.0066 Score=56.46 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=90.1
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCC-----------ccccCCCccccccCChHHHHHHHHH---
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP-----------KVAGHGCFGVSLMLDPKFVGEAMSV--- 188 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~-----------~v~r~g~yG~~Ll~~~~~l~eiv~a--- 188 (436)
...+++.=+.+.++++..+.++.+.+.|++.|++..--+.. ...+.+ ++.++.. +.+...+++
T Consensus 10 ~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g--~gtvl~~-d~~~~A~~~gAd 86 (187)
T PRK07455 10 QQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIG--TGTILTL-EDLEEAIAAGAQ 86 (187)
T ss_pred HhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEe--EEEEEcH-HHHHHHHHcCCC
Confidence 34566666778888888888888888888888885432210 001011 1122222 333322221
Q ss_pred -------------HhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccH
Q 013789 189 -------------IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (436)
Q Consensus 189 -------------v~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~ 255 (436)
+++..+++ .-+|. .+.+++.+ +.+.|+|+|-+..-. .....
T Consensus 87 gv~~p~~~~~~~~~~~~~~~~----~i~G~---~t~~e~~~-----A~~~Gadyv~~Fpt~--------------~~~G~ 140 (187)
T PRK07455 87 FCFTPHVDPELIEAAVAQDIP----IIPGA---LTPTEIVT-----AWQAGASCVKVFPVQ--------------AVGGA 140 (187)
T ss_pred EEECCCCCHHHHHHHHHcCCC----EEcCc---CCHHHHHH-----HHHCCCCEEEECcCC--------------cccCH
Confidence 01111221 12341 23444432 235899999884311 01126
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 256 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 256 ~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
+++.++.+.++++||++.||| +++.+.+.++.||++|.++++++.
T Consensus 141 ~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 141 DYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 777788777768999999999 889999999999999999998754
No 190
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.26 E-value=0.00089 Score=64.79 Aligned_cols=80 Identities=10% Similarity=0.070 Sum_probs=62.5
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|+|.+++---.+...|. +.+++.+.++.+.. +||-.-|||+|.++++++++.||+-|.||+.
T Consensus 36 A~~~~~~ga~~lhivDLd~a~~g~---------~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~ 104 (241)
T PRK14114 36 VEKLIEEGFTLIHVVDLSKAIENS---------VENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_pred HHHHHHCCCCEEEEEECCCcccCC---------cchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECch
Confidence 445567999999986443211121 22478888888864 6999999999999999999999999999999
Q ss_pred HHhCCcchhhhh
Q 013789 299 AYQNPWYTLGHV 310 (436)
Q Consensus 299 ~l~~P~lf~~~~ 310 (436)
++.||.++ +++
T Consensus 105 a~~~p~~l-~~~ 115 (241)
T PRK14114 105 VLEDPSFL-KFL 115 (241)
T ss_pred hhCCHHHH-HHH
Confidence 99999874 444
No 191
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.24 E-value=0.002 Score=59.83 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=53.9
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
.+.|+|++.+...-. .+..+ ...++..++.+.++++..+++||++.||| +.+++.+++++|+++|.+|++++..
T Consensus 113 ~~~g~dyi~~~~v~~--t~~k~---~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 113 EAEGADYIGFGPIFP--TPTKK---DPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred hHcCCCEEEECCccC--CCCCC---CCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 358999998743211 01000 01122347777777766557999999999 6899999999999999999999866
Q ss_pred Cc
Q 013789 303 PW 304 (436)
Q Consensus 303 P~ 304 (436)
.+
T Consensus 187 ~d 188 (196)
T TIGR00693 187 AD 188 (196)
T ss_pred CC
Confidence 54
No 192
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.24 E-value=0.019 Score=53.47 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=90.1
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~ 203 (436)
+.|+++-+--.++.. ..++.+.++|+|.|-+|.-.+ ++.+.++++.+++. |+++.+=+ +
T Consensus 53 ~~~i~~~~~v~~~~~--~~~~~~~~aGad~i~~h~~~~-----------------~~~~~~~i~~~~~~-g~~~~v~~-~ 111 (202)
T cd04726 53 DKIIVADLKTADAGA--LEAEMAFKAGADIVTVLGAAP-----------------LSTIKKAVKAAKKY-GKEVQVDL-I 111 (202)
T ss_pred CCEEEEEEEeccccH--HHHHHHHhcCCCEEEEEeeCC-----------------HHHHHHHHHHHHHc-CCeEEEEE-e
Confidence 578888877666643 234667789999998884221 23356677776653 55543310 1
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCccEEEEc-cCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd~I~vh-grt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da 282 (436)
+. .+.++..+ +.+.|+|.+.++ +++....| .+...+.+.++.+. .++||++.|||. ++.+
T Consensus 112 ~~---~t~~e~~~-----~~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~-~~~~i~~~GGI~-~~~i 172 (202)
T cd04726 112 GV---EDPEKRAK-----LLKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKL-LGVKVAVAGGIT-PDTL 172 (202)
T ss_pred CC---CCHHHHHH-----HHHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhh-cCCCEEEECCcC-HHHH
Confidence 11 23333322 234799999885 44321111 01125666666554 489999999995 9999
Q ss_pred HHHHHcCCCeeeehHHHHhCCc
Q 013789 283 NAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 283 ~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.++++.|||+|.+|+++...+.
T Consensus 173 ~~~~~~Gad~vvvGsai~~~~d 194 (202)
T cd04726 173 PEFKKAGADIVIVGRAITGAAD 194 (202)
T ss_pred HHHHhcCCCEEEEeehhcCCCC
Confidence 9999999999999999876555
No 193
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.24 E-value=0.023 Score=55.66 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=107.7
Q ss_pred cCCcEEEcCCCCCChH--HHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCC-------HH
Q 013789 67 LPPWFSVAPMMDWTDN--HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN-------LD 137 (436)
Q Consensus 67 l~n~iilAPMagvtd~--~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~-------p~ 137 (436)
++.-+..-|+.|..+. .++.+.. | ++-+. ...++.+... ..+ .+.|++++|.++. ..
T Consensus 29 ~DHG~~~Gp~~gl~~~~~~~~~i~~--~-~da~~----~~~G~~~~~~--~~~-----~~~~lil~ls~~t~~~~~~~~~ 94 (264)
T PRK08227 29 FDHGYFQGPTTGLERIDINIAPLFP--Y-ADVLM----CTRGILRSVV--PPA-----TNKPVVLRASGGNSILKELSNE 94 (264)
T ss_pred CCCccccCCCccccChHHHHHHHhh--c-CCEEE----eChhHHHhcc--ccc-----CCCcEEEEEcCCCCCCCCCCcc
Confidence 4556666676666543 2333332 3 44332 2244433211 111 3568999998743 13
Q ss_pred HHHHHHHHHHHCCCCEEE--ecCCCCCCccccCCCccccccCChHHHHHHHHHHhh--ccCCcEEEEeccCCCCCCcHHH
Q 013789 138 NLAKATELANAYNYDEIN--LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDDHDSYNQ 213 (436)
Q Consensus 138 ~~~~aA~~~~~~G~d~Id--LN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~--~~~iPvsvKiR~G~~~~~~~~~ 213 (436)
.+....+.+.+.|+|+|- +|.|.+. ..+.+.++-+.+.+ ..|+|+.+-...|-...++. +
T Consensus 95 ~l~~sVeeAvrlGAdAV~~~v~~Gs~~---------------E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~-~ 158 (264)
T PRK08227 95 AVAVDMEDAVRLNACAVAAQVFIGSEY---------------EHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDA-R 158 (264)
T ss_pred cceecHHHHHHCCCCEEEEEEecCCHH---------------HHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchH-H
Confidence 333445667788999654 4555222 12334443333222 45999777444453322223 3
Q ss_pred HHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCC-HHHHHH----HHHc
Q 013789 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNA----ALRK 288 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s-~~da~~----~l~~ 288 (436)
+....+++..+.|+|.|-+- +. -+.+.++++.. .+||+..||=.. .+++.+ +++.
T Consensus 159 ~ia~aaRiaaELGADiVK~~-------y~------------~~~f~~vv~a~-~vPVviaGG~k~~~~~~L~~v~~ai~a 218 (264)
T PRK08227 159 YFSLATRIAAEMGAQIIKTY-------YV------------EEGFERITAGC-PVPIVIAGGKKLPERDALEMCYQAIDE 218 (264)
T ss_pred HHHHHHHHHHHHcCCEEecC-------CC------------HHHHHHHHHcC-CCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 55566788888999998852 10 13455677765 789999998773 344444 4448
Q ss_pred CCCeeeehHHHHhCCc
Q 013789 289 GAHHVMVGRAAYQNPW 304 (436)
Q Consensus 289 Gad~VmiGRa~l~~P~ 304 (436)
||.||.+||=....|.
T Consensus 219 Ga~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 219 GASGVDMGRNIFQSEH 234 (264)
T ss_pred CCceeeechhhhccCC
Confidence 9999999998876654
No 194
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0018 Score=67.97 Aligned_cols=113 Identities=17% Similarity=0.123 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCc--c
Q 013789 178 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL--K 254 (436)
Q Consensus 178 ~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~--~ 254 (436)
.++-+.+.+..+++.. ..+|+||+-.+... ..+ +.-..++++|.|+|.|-.. |++-..+..+... .
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~v----~~i----aagvakA~AD~I~IdG~~G---GTGAsP~~~~~~~GiP 354 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHGV----GTI----AAGVAKAGADVITIDGADG---GTGASPLTSIDHAGIP 354 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccch----HHH----HhhhhhccCCEEEEcCCCC---cCCCCcHhHhhcCCch
Confidence 4677888888888864 46699998875322 122 2223469999999987653 4332222222111 1
Q ss_pred HHH----HHHHHhcC---CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 255 YEY----YYALLRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 255 ~~~----v~~l~~~~---~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
|++ +.+..... -.+-|++.|++.|+.|+..++.+|||.|-+||++|.
T Consensus 355 ~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~li 408 (485)
T COG0069 355 WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHH
Confidence 433 12221111 157899999999999999999999999999999874
No 195
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.19 E-value=0.032 Score=55.24 Aligned_cols=76 Identities=14% Similarity=0.319 Sum_probs=57.2
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC--CCCCHHHHHHHHHcCCCeeeehHH
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG--gI~s~~da~~~l~~Gad~VmiGRa 298 (436)
..++.|+|+|.+.-.+.. |..+ .-+++.++.+.++.+.. ++|+++-| || +.+++.++++.|++.|-+.++
T Consensus 161 f~~~tg~DyLAvaiG~~h--g~~~----~~~~l~~~~L~~i~~~~-~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~ 232 (281)
T PRK06806 161 FAEETDVDALAVAIGNAH--GMYN----GDPNLRFDRLQEINDVV-HIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATA 232 (281)
T ss_pred HHHhhCCCEEEEccCCCC--CCCC----CCCccCHHHHHHHHHhc-CCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHH
Confidence 345679999988433321 1111 12456789998988775 89999999 99 568899999999999999999
Q ss_pred HHhCCc
Q 013789 299 AYQNPW 304 (436)
Q Consensus 299 ~l~~P~ 304 (436)
+..+|.
T Consensus 233 i~~a~~ 238 (281)
T PRK06806 233 TFNSVI 238 (281)
T ss_pred HHHHHH
Confidence 998643
No 196
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.19 E-value=0.0022 Score=58.84 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=54.5
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
.+.|+|+|.+..... +.+... .-.+..++.+.++++. .++||++.||| +.+++.++++.|+|+|.+|++++.+
T Consensus 112 ~~~g~d~i~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 112 EELGADYVGFGPVFP---TPTKPG--AGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred hhcCCCEEEECCccC---CCCCCC--CCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcC
Confidence 357999999865432 111100 0023347777777665 48999999999 5799999999999999999999876
Q ss_pred Cc
Q 013789 303 PW 304 (436)
Q Consensus 303 P~ 304 (436)
+.
T Consensus 185 ~~ 186 (196)
T cd00564 185 DD 186 (196)
T ss_pred CC
Confidence 65
No 197
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.18 E-value=0.0013 Score=63.85 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=57.2
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++..++.|++.|++--- | .+ +.+.+.++++.. ++||...|||++ ++++++++.||+.|.||+.
T Consensus 44 A~~~~~~Ga~~lHvVDL-----g---------~~-n~~~i~~i~~~~-~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~ 106 (253)
T TIGR02129 44 AKLYKDDGVKGCHVIML-----G---------PN-NDDAAKEALHAY-PGGLQVGGGIND-TNAQEWLDEGASHVIVTSW 106 (253)
T ss_pred HHHHHHcCCCEEEEEEC-----C---------CC-cHHHHHHHHHhC-CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcH
Confidence 44567899999998632 2 11 478888888875 899999999998 9999999999999999999
Q ss_pred HHhCC
Q 013789 299 AYQNP 303 (436)
Q Consensus 299 ~l~~P 303 (436)
++.+|
T Consensus 107 av~~~ 111 (253)
T TIGR02129 107 LFTKG 111 (253)
T ss_pred HHhCC
Confidence 99994
No 198
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.16 E-value=0.015 Score=55.53 Aligned_cols=134 Identities=14% Similarity=0.105 Sum_probs=78.3
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
.++.+.++|+|+|-+.-.= |. ...+.+.+.++...+ .|+.+.+ -. .+.+++. .
T Consensus 77 ~~~~l~~~G~~~vii~~se------r~--------~~~~e~~~~v~~a~~-~Gl~~I~--~v-----~~~~~~~-----~ 129 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSE------RR--------LTLADIEAVVERAKK-LGLESVV--CV-----NNPETSA-----A 129 (223)
T ss_pred HHHHHHHcCCCEEEEeccc------cc--------cCHHHHHHHHHHHHH-CCCeEEE--Ec-----CCHHHHH-----H
Confidence 4677888999998665320 00 112235566666555 3554333 11 1222322 2
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhc-CCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~-~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
+.+.|.+.|.+-+|... |.+... ....+.....+.+.+++ ..++||++-|||.+++++..+++.|+|||.+|++++
T Consensus 130 ~~~~~~~~I~~~p~~~i--gt~~~~-~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l 206 (223)
T PRK04302 130 AAALGPDYVAVEPPELI--GTGIPV-SKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVV 206 (223)
T ss_pred HhcCCCCEEEEeCcccc--ccCCCC-CcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHh
Confidence 34578888887665321 221000 00011112222233343 347999999999999999999999999999999999
Q ss_pred hCCcc
Q 013789 301 QNPWY 305 (436)
Q Consensus 301 ~~P~l 305 (436)
..+++
T Consensus 207 ~~~~~ 211 (223)
T PRK04302 207 KAKDP 211 (223)
T ss_pred CCcCH
Confidence 87773
No 199
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.15 E-value=0.072 Score=53.03 Aligned_cols=207 Identities=11% Similarity=0.041 Sum_probs=119.6
Q ss_pred CcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccc--hhhhhccc---chhhhhc-----cCCCCCcEEEEE---cCCC
Q 013789 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAA--ETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSN 135 (436)
Q Consensus 69 n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~--~~l~~~~~---~~~~~~~-----~~~~~~pi~vQL---~g~~ 135 (436)
+..+++| ++-|.-=.+++...| ...++|--... ..+...+- ....++. ....+.|+++=+ +| +
T Consensus 16 ~~~l~~p--~~~Da~SAri~e~~G-f~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG-~ 91 (292)
T PRK11320 16 EKPLQIV--GTINAYHALLAERAG-FKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFG-G 91 (292)
T ss_pred CCcEEec--CCCCHHHHHHHHHcC-CCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCC-C
Confidence 3344444 666766677777775 55555432221 21211110 1111111 123567888877 35 8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcEEEEeccCCCCCCcHHHH
Q 013789 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPvsvKiR~G~~~~~~~~~~ 214 (436)
+....+..+.++++|+.+|.|-=... +|- .|++++.-+-.++...+=+++++++ .+.++.+--|........+++.
T Consensus 92 ~~~v~r~V~~~~~aGaagi~IEDq~~-pK~--cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deA 168 (292)
T PRK11320 92 AFNIARTVKSMIKAGAAAVHIEDQVG-AKR--CGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAA 168 (292)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCC-ccc--cCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHH
Confidence 99999999999999999999954432 121 2333333334444444444555553 3666666666543222346666
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe---CCCCCHHHHHHHHHcCCC
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAH 291 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan---GgI~s~~da~~~l~~Gad 291 (436)
.+. ++...++|+|.|-++|-+. .+.+.++.+.. ++|+++| ++-.-.-+..++.+.|+.
T Consensus 169 I~R-a~aY~eAGAD~ifi~~~~~-----------------~~~i~~~~~~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~ 229 (292)
T PRK11320 169 IER-AQAYVEAGADMIFPEAMTE-----------------LEMYRRFADAV-KVPILANITEFGATPLFTTEELASAGVA 229 (292)
T ss_pred HHH-HHHHHHcCCCEEEecCCCC-----------------HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence 665 4556679999999986321 55666777765 6788443 332211235556668999
Q ss_pred eeeehHHHHh
Q 013789 292 HVMVGRAAYQ 301 (436)
Q Consensus 292 ~VmiGRa~l~ 301 (436)
.|..|..++.
T Consensus 230 ~v~~~~~~~~ 239 (292)
T PRK11320 230 MVLYPLSAFR 239 (292)
T ss_pred EEEEChHHHH
Confidence 9999976653
No 200
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.11 E-value=0.0026 Score=60.53 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=56.6
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
+.+.+..|...+.+-+ .|.. .+.+.+.++++...++||+.-|||+|+++++++++.|||+|.+|++
T Consensus 141 A~aae~~g~~ivyLe~-----SG~~---------~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsa 206 (219)
T cd02812 141 ALAAEYLGMPIVYLEY-----SGAY---------GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNI 206 (219)
T ss_pred HHHHHHcCCeEEEeCC-----CCCc---------CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 5566777755555541 1211 2267777777653379999999999999999999999999999999
Q ss_pred HHhCCcch
Q 013789 299 AYQNPWYT 306 (436)
Q Consensus 299 ~l~~P~lf 306 (436)
++.||.++
T Consensus 207 i~~~p~~~ 214 (219)
T cd02812 207 VEEDPNAA 214 (219)
T ss_pred hhCCHHHH
Confidence 99998875
No 201
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.06 E-value=0.0062 Score=67.22 Aligned_cols=149 Identities=21% Similarity=0.190 Sum_probs=92.3
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec------------cCCCC
Q 013789 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------------IGVDD 207 (436)
Q Consensus 140 ~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR------------~G~~~ 207 (436)
.+.|+..++.|+++|-+..- ...||+++ +-++.+++.+++||-.|== .|-|-
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe--------~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADa 136 (695)
T PRK13802 73 AALAREYEQGGASAISVLTE--------GRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADL 136 (695)
T ss_pred HHHHHHHHHcCCcEEEEecC--------cCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCE
Confidence 45667788899999977631 23456543 3344556667899987721 12111
Q ss_pred C------CcHHHHHHHHHHHhhcCCccEE-EEccCccc----ccCC--CCCCCCCCCCc--cHHHHHHHHhcCC-CcEEE
Q 013789 208 H------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIPPL--KYEYYYALLRDFP-DLTFT 271 (436)
Q Consensus 208 ~------~~~~~~~~~la~~~e~~Gvd~I-~vhgrt~~----~~G~--~~~~~~~i~~~--~~~~v~~l~~~~~-~iPVI 271 (436)
. -+-.++.++ ...++..|.+.+ .||.+.-. ..|. -+.+|+.+.+. +.....++....+ ++.+|
T Consensus 137 vLLI~~~L~~~~l~~l-~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~V 215 (695)
T PRK13802 137 VLLIVAALDDAQLKHL-LDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKV 215 (695)
T ss_pred eehhHhhcCHHHHHHH-HHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEE
Confidence 0 011123332 334456777766 56755321 1111 11244444443 3444556655554 57889
Q ss_pred EeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 272 anGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+-+||.+++|+..+.+.|+|+|.||++++..|+.
T Consensus 216 sESGI~~~~d~~~l~~~G~davLIGeslm~~~dp 249 (695)
T PRK13802 216 AESGVFGAVEVEDYARAGADAVLVGEGVATADDH 249 (695)
T ss_pred EcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCH
Confidence 9999999999999999999999999999999985
No 202
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.04 E-value=0.017 Score=60.67 Aligned_cols=127 Identities=14% Similarity=0.130 Sum_probs=79.7
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
-++.+.++|+|+|-++... +...+.++++.+++ .++++.+-+ . ...++.+. .+.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~-----------------~~~~~~~~i~~a~~-~G~~~~~g~-~--s~~t~~e~-----~~~ 126 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLA-----------------DDSTIEDAVRAARK-YGVRLMADL-I--NVPDPVKR-----AVE 126 (430)
T ss_pred HHHHHHHcCCCEEEEecCC-----------------ChHHHHHHHHHHHH-cCCEEEEEe-c--CCCCHHHH-----HHH
Confidence 4456778899998766211 11124556666655 466655421 1 11112222 123
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
+.+.|+|+|.++.... + . ..++..++.+.++++.. ++||++.||| +.+.+.++++.|||+|.+||+++.
T Consensus 127 a~~~GaD~I~~~pg~~---~---~---~~~~~~~~~l~~l~~~~-~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 127 LEELGVDYINVHVGID---Q---Q---MLGKDPLELLKEVSEEV-SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHhcCCCEEEEEeccc---h---h---hcCCChHHHHHHHHhhC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcC
Confidence 3468999998863211 0 0 01122367777777665 7999999999 689999999999999999999987
Q ss_pred CCcc
Q 013789 302 NPWY 305 (436)
Q Consensus 302 ~P~l 305 (436)
.+..
T Consensus 196 ~~d~ 199 (430)
T PRK07028 196 SADV 199 (430)
T ss_pred CCCH
Confidence 7653
No 203
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.02 E-value=0.0025 Score=61.81 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=61.3
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++..++.|+..+++---.... |. +.+.+.+.++.+.. .+||-.-|||+|.++++++++.||+-|.+|+.
T Consensus 37 a~~~~~~g~~~lhivDLd~a~-g~---------~~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~ 105 (243)
T TIGR01919 37 AKWWEQGGAEWIHLVDLDAAF-GG---------GNNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGTA 105 (243)
T ss_pred HHHHHhCCCeEEEEEECCCCC-CC---------cchHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECch
Confidence 344567899888875322211 11 12378888888876 69999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.||.++.
T Consensus 106 a~~~p~~~~ 114 (243)
T TIGR01919 106 ALENPWWAA 114 (243)
T ss_pred hhCCHHHHH
Confidence 999999753
No 204
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.013 Score=56.81 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=91.8
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec------------cCCCCC
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------------IGVDDH 208 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR------------~G~~~~ 208 (436)
+.|+..+++|+.+|.+=.--+.+ .| .+ +.++.+++.+++||-+|== .|-+-.
T Consensus 70 ~ia~~Ye~~GAa~iSVLTd~~~F--------~G----s~----e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADav 133 (254)
T COG0134 70 EIAKAYEEGGAAAISVLTDPKYF--------QG----SF----EDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAV 133 (254)
T ss_pred HHHHHHHHhCCeEEEEecCcccc--------CC----CH----HHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccH
Confidence 35677788899988765433332 22 23 3446667778999988821 122210
Q ss_pred ------CcHHHHHHHHHHHhhcCCccEEE-EccCccc----ccCC--CCCCCCCCCCc--cHHHHHHHHhcCC-CcEEEE
Q 013789 209 ------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKAL----LNGI--SPAENRTIPPL--KYEYYYALLRDFP-DLTFTL 272 (436)
Q Consensus 209 ------~~~~~~~~~la~~~e~~Gvd~I~-vhgrt~~----~~G~--~~~~~~~i~~~--~~~~v~~l~~~~~-~iPVIa 272 (436)
-+-+++.++ ...+++.|.+.++ ||..+-. ..|. -+-+|+.+.+. +.+...++....+ ++-+|.
T Consensus 134 LLI~~~L~~~~l~el-~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~Is 212 (254)
T COG0134 134 LLIVAALDDEQLEEL-VDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILIS 212 (254)
T ss_pred HHHHHhcCHHHHHHH-HHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEe
Confidence 011122332 3345567877664 6755411 0110 12344544442 3455556665554 578999
Q ss_pred eCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 273 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 273 nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
-.||.+++|+.++...|+|++.||+++|.++..
T Consensus 213 ESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~ 245 (254)
T COG0134 213 ESGISTPEDVRRLAKAGADAFLVGEALMRADDP 245 (254)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCH
Confidence 999999999999999999999999999999986
No 205
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.01 E-value=0.013 Score=59.02 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=94.0
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcEEEEec------------cCC
Q 013789 139 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCR------------IGV 205 (436)
Q Consensus 139 ~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPvsvKiR------------~G~ 205 (436)
-.+.|+..++.|++.|-+..-- ..|+|++ +-++.+++. +++||-+|== .|-
T Consensus 141 p~~iA~~Ye~~GA~aISVLTd~--------~~F~Gs~--------e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GA 204 (338)
T PLN02460 141 PVEIAQAYEKGGAACLSVLTDE--------KYFQGSF--------ENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGA 204 (338)
T ss_pred HHHHHHHHHhCCCcEEEEecCc--------CcCCCCH--------HHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCC
Confidence 3466777888999999776322 2345442 334566776 7899988821 132
Q ss_pred CCC------CcHHHHHHHHHHHhhcCCccEE-EEccCccc---cc--CC--CCCCCCCCCCc--cHHHHHHHHh-----c
Q 013789 206 DDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL---LN--GI--SPAENRTIPPL--KYEYYYALLR-----D 264 (436)
Q Consensus 206 ~~~------~~~~~~~~~la~~~e~~Gvd~I-~vhgrt~~---~~--G~--~~~~~~~i~~~--~~~~v~~l~~-----~ 264 (436)
|-. -+-.++.++ .+.+...|.+.+ .||...-. +. |. -+.+|+.+.+. +.....++.. .
T Consensus 205 DAVLLIaaiL~~~~L~~l-~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~ 283 (338)
T PLN02460 205 DAILLIAAVLPDLDIKYM-LKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQ 283 (338)
T ss_pred CcHHHHHHhCCHHHHHHH-HHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccc
Confidence 210 011133333 345566787776 57765421 11 21 12345555443 3444555554 2
Q ss_pred C--CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 265 F--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 265 ~--~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
. .++-+|+-+||.+++|+..+.+.|+|+|.||.+++..|+.
T Consensus 284 i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp 326 (338)
T PLN02460 284 IREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDP 326 (338)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence 2 2567899999999999999999999999999999999985
No 206
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.01 E-value=0.034 Score=53.80 Aligned_cols=157 Identities=8% Similarity=-0.015 Sum_probs=96.3
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccch-----hhhhc----c-CCC-CCcEEEEE---cCCCHHHHHH
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNL-----DRFLA----F-SPE-QHPIVLQI---GGSNLDNLAK 141 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~-----~~~~~----~-~~~-~~pi~vQL---~g~~p~~~~~ 141 (436)
|.++-|....+++.++| .+.+++.-.... ...+.+.+ +.++. + ... ..|+++=+ +|.+++...+
T Consensus 16 ~~~ayD~~sA~i~e~aG-~dai~v~~s~~a-~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~ 93 (240)
T cd06556 16 TLTAYDYSMAKQFADAG-LNVMLVGDSQGM-TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFE 93 (240)
T ss_pred EecCCCHHHHHHHHHcC-CCEEEEChHHHH-HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHH
Confidence 66888999999988885 777776543222 11122211 11111 1 112 35888777 3567788888
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCC-------------CCC
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-------------DDH 208 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~-------------~~~ 208 (436)
.++.+.++|+++|.|--+ .+ ..+.+++++++ ++||...+..-. ...
T Consensus 94 ~~~~l~~aGa~gv~iED~-------------------~~-~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~ 152 (240)
T cd06556 94 LAKTFMRAGAAGVKIEGG-------------------EW-HIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGD 152 (240)
T ss_pred HHHHHHHcCCcEEEEcCc-------------------HH-HHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCH
Confidence 899888899999977532 12 33455555544 477665544311 011
Q ss_pred CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC
Q 013789 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (436)
Q Consensus 209 ~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg 275 (436)
...+++.+. ++.++++|+|.|.+++.+ .+.+.++.+.. ++|+++||.
T Consensus 153 ~~~~~ai~R-a~ay~~AGAd~i~~e~~~------------------~e~~~~i~~~~-~~P~~~~ga 199 (240)
T cd06556 153 EAGEQLIAD-ALAYAPAGADLIVMECVP------------------VELAKQITEAL-AIPLAGIGA 199 (240)
T ss_pred HHHHHHHHH-HHHHHHcCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEEec
Confidence 224455544 567788999999997531 55666777764 899998874
No 207
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.99 E-value=0.021 Score=55.68 Aligned_cols=140 Identities=15% Similarity=0.191 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEeccCCCCCCcHHH
Q 013789 136 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQ 213 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR~G~~~~~~~~~ 213 (436)
.+.-..-++.+.+.|+|.||+=+- +|.-+..+.+.+.+-+.+|++.++ .|+-|-+-.+.-..+ ++
T Consensus 82 t~~K~~Ea~~Ai~~GAdEiD~Vin-----------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~e--e~ 148 (257)
T PRK05283 82 IDIALAETRAAIAYGADEVDVVFP-----------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDE--AL 148 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEeeecc-----------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCH--HH
Confidence 344444455666789999997532 244444678888888888888654 455444444432222 11
Q ss_pred HHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC---CCcEEEEeCCCCCHHHHHHHHHcCC
Q 013789 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---PDLTFTLNGGINTVDEVNAALRKGA 290 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~---~~iPVIanGgI~s~~da~~~l~~Ga 290 (436)
+.. +.+++.++|+|+|--+. |..+.. -.+.+...+.+.+++. .++-|=++|||.|.+++.++++.
T Consensus 149 i~~-a~~~a~~aGADFVKTST------Gf~~~g---At~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a-- 216 (257)
T PRK05283 149 IRK-ASEIAIKAGADFIKTST------GKVPVN---ATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL-- 216 (257)
T ss_pred HHH-HHHHHHHhCCCEEEcCC------CCCCCC---CCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH--
Confidence 222 34456679999997542 221100 0111233333443321 25889999999999999999986
Q ss_pred CeeeehHHHHhCCcc
Q 013789 291 HHVMVGRAAYQNPWY 305 (436)
Q Consensus 291 d~VmiGRa~l~~P~l 305 (436)
|+-.|++-|+
T Consensus 217 -----g~~~lg~~~~ 226 (257)
T PRK05283 217 -----ADEILGADWA 226 (257)
T ss_pred -----HHHHhChhhc
Confidence 4555666665
No 208
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=96.98 E-value=0.0015 Score=62.75 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=45.0
Q ss_pred cHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 254 KYEYYYALLRDFPDL-TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 254 ~~~~v~~l~~~~~~i-PVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
+.+.+.++++.. ++ ||+.-|||++.+++++++..|||+|.+|+++..||.
T Consensus 171 ~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 171 PPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 377787877765 77 999999999999999999999999999999999987
No 209
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.98 E-value=0.0013 Score=62.77 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=46.4
Q ss_pred cHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcch
Q 013789 254 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (436)
Q Consensus 254 ~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 306 (436)
+.+.+.++++...++||+.-|||+|.++++++++.|||+|.+|+.++.||..+
T Consensus 166 ~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~ 218 (223)
T TIGR01768 166 PPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKA 218 (223)
T ss_pred CHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHH
Confidence 36777777665447999999999999999999999999999999999998764
No 210
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.96 E-value=0.006 Score=58.65 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=84.3
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc---cCCcEEEEeccCCCCC---CcHHH
Q 013789 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRIGVDDH---DSYNQ 213 (436)
Q Consensus 140 ~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~---~~iPvsvKiR~G~~~~---~~~~~ 213 (436)
...++.+.+.|+|+|++-.- ||...-.+.+.+.+.+.++++. .++|+.+-.-+ .... +.-.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~-----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~ 146 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN-----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPD 146 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHH
T ss_pred HHHHHHHHHcCCceeeeecc-----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHH
Confidence 56677788899999987531 1111113345555555555553 36777665222 1110 01223
Q ss_pred HHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcE----EEEeCCC------CCHHHHH
Q 013789 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT----FTLNGGI------NTVDEVN 283 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iP----VIanGgI------~s~~da~ 283 (436)
......+++.+.|+|.|-..-... .|. ...+.+.+.++++.. .+| |.++||| .+.+++.
T Consensus 147 ~I~~a~ria~e~GaD~vKt~tg~~--~~~--------t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~ 215 (236)
T PF01791_consen 147 LIARAARIAAELGADFVKTSTGKP--VGA--------TPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDAL 215 (236)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SSS--SCS--------HHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEecCCcc--ccc--------cHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHH
Confidence 344456777789999998753210 111 111245566666654 577 9999999 9999999
Q ss_pred HHHHcCC--CeeeehHHHHh
Q 013789 284 AALRKGA--HHVMVGRAAYQ 301 (436)
Q Consensus 284 ~~l~~Ga--d~VmiGRa~l~ 301 (436)
++++.|| -|+..||.++.
T Consensus 216 ~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 216 EFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHHTTHSEEEEEEHHHHHT
T ss_pred HHHHcCChhHHHHHHHHHHc
Confidence 9999999 99999998753
No 211
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.95 E-value=0.13 Score=51.26 Aligned_cols=202 Identities=7% Similarity=0.038 Sum_probs=115.5
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEe-ccccchh-hhhccc---chhhhhc-----cCCCCCcEEEEE---cCCCHHHHHHH
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYT-EMLAAET-IIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKA 142 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~t-emv~~~~-l~~~~~---~~~~~~~-----~~~~~~pi~vQL---~g~~p~~~~~a 142 (436)
+.++-|.-=.+++...| ...+++ ..-.+.. +...+- ....++. ....+.|+++=+ ||+.++ ..+.
T Consensus 20 ~p~v~Da~SArl~e~aG-f~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~-v~r~ 97 (294)
T TIGR02319 20 VPSAYDALSAKVIQQAG-FPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMS-VWRA 97 (294)
T ss_pred eecCcCHHHHHHHHHcC-CCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHH-HHHH
Confidence 34777777777777776 566654 4222221 211110 1111111 233567998887 466666 6788
Q ss_pred HHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 143 A~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
++.++++|+.+|.|.=... +| +.|++++.-+-..+...+=+++++++ -+.++.+--|........+++..+. ++.
T Consensus 98 V~~~~~aGaagi~IEDq~~-pK--~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~R-a~a 173 (294)
T TIGR02319 98 TREFERVGIVGYHLEDQVN-PK--RCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRR-SRE 173 (294)
T ss_pred HHHHHHcCCeEEEEECCCC-cc--ccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHH-HHH
Confidence 9999999999999964422 12 22444443333444444444444443 2345555555533222346666665 445
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEE---EEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF---TLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPV---IanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
..++|+|.|-++|-+. .+.+.++++.. +.|+ +..|+-.-.-.+.++.+.|...|..|..
T Consensus 174 Y~eAGAD~ifi~~~~~-----------------~~ei~~~~~~~-~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~ 235 (294)
T TIGR02319 174 YVAAGADCIFLEAMLD-----------------VEEMKRVRDEI-DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLS 235 (294)
T ss_pred HHHhCCCEEEecCCCC-----------------HHHHHHHHHhc-CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHH
Confidence 5679999999986221 45566777765 5666 3444432223466666789999999876
Q ss_pred HHh
Q 013789 299 AYQ 301 (436)
Q Consensus 299 ~l~ 301 (436)
++.
T Consensus 236 ~~~ 238 (294)
T TIGR02319 236 GWM 238 (294)
T ss_pred HHH
Confidence 644
No 212
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.91 E-value=0.011 Score=63.53 Aligned_cols=141 Identities=8% Similarity=0.066 Sum_probs=85.8
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcEEEEe------------------
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKC------------------ 201 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPvsvKi------------------ 201 (436)
+.++.+-++|+|-|-||...-... ..-|-++-..+|+++.++.+..-+. +-+-|.+|-
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~---~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~ 414 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAA---EEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTN 414 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhCh---hhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccc
Confidence 345555678999999985321100 0012222346889999998886332 212222221
Q ss_pred --------------ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCc--ccccCCCCCCCCCCCCccHHHHHHHHhcC
Q 013789 202 --------------RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDF 265 (436)
Q Consensus 202 --------------R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt--~~~~G~~~~~~~~i~~~~~~~v~~l~~~~ 265 (436)
--||...... +..++ ++.+++.|+..|.+..-. ....|. +++++.++.+..
T Consensus 415 ~~~~~~~~~~~~v~~~gg~~~~~~-~~~~~-~~~~~~~Gageil~t~id~DGt~~G~-----------d~~l~~~v~~~~ 481 (538)
T PLN02617 415 PGPNGEEYAWYQCTVKGGREGRPI-GAYEL-AKAVEELGAGEILLNCIDCDGQGKGF-----------DIELVKLVSDAV 481 (538)
T ss_pred cCcCcccceEEEEEEecCcccCCC-CHHHH-HHHHHhcCCCEEEEeeccccccccCc-----------CHHHHHHHHhhC
Confidence 0133332111 12232 345577999998886433 222232 377777777664
Q ss_pred CCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHH
Q 013789 266 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 266 ~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa 298 (436)
++|||++||+.+++|+.++++ .|||+++.|.-
T Consensus 482 -~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~ 514 (538)
T PLN02617 482 -TIPVIASSGAGTPEHFSDVFSKTNASAALAAGI 514 (538)
T ss_pred -CCCEEEECCCCCHHHHHHHHhcCCccEEEEEee
Confidence 999999999999999999998 78999998853
No 213
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.91 E-value=0.02 Score=53.87 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=95.3
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc--------cCCCccccccCChHHHHHHHHHHhh----
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA--------GHGCFGVSLMLDPKFVGEAMSVIAA---- 191 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~--------r~g~yG~~Ll~~~~~l~eiv~av~~---- 191 (436)
..+++.=|-+.++++....++.+.+.|+..||+.+-.|..... ..=..|+.-.-+++.+.+.+++=.+
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 4567777889999999999999999999999998865531100 0001244444455555444433100
Q ss_pred ------------ccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHH
Q 013789 192 ------------NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (436)
Q Consensus 192 ------------~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~ 259 (436)
..++|+ =+|. -+.+|+.. . -++|++.|-+..-.. .+| ..++.
T Consensus 83 P~~~~~vi~~a~~~~i~~----iPG~---~TptEi~~----A-~~~Ga~~vK~FPa~~-~GG-------------~~yik 136 (201)
T PRK06015 83 PGTTQELLAAANDSDVPL----LPGA---ATPSEVMA----L-REEGYTVLKFFPAEQ-AGG-------------AAFLK 136 (201)
T ss_pred CCCCHHHHHHHHHcCCCE----eCCC---CCHHHHHH----H-HHCCCCEEEECCchh-hCC-------------HHHHH
Confidence 011221 0111 23444433 2 258888888875321 011 46677
Q ss_pred HHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 260 ~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
.+..-++++|++..||| +.+.+.+.++.|+..+..|..+..+.
T Consensus 137 al~~plp~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~~~ 179 (201)
T PRK06015 137 ALSSPLAGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVAPKE 179 (201)
T ss_pred HHHhhCCCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhCCch
Confidence 77777889999999999 66999999998887777777665433
No 214
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.011 Score=55.73 Aligned_cols=152 Identities=17% Similarity=0.097 Sum_probs=95.3
Q ss_pred hhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc
Q 013789 114 LDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 193 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~ 193 (436)
++.+.+.. .++++++-+-..|.-. --++.+.++|+|.+-+-+..|.. -+...++..+ ..
T Consensus 47 V~~lr~~~-pd~~IvAD~Kt~D~G~--~e~~ma~~aGAd~~tV~g~A~~~-----------------TI~~~i~~A~-~~ 105 (217)
T COG0269 47 VRALRELF-PDKIIVADLKTADAGA--IEARMAFEAGADWVTVLGAADDA-----------------TIKKAIKVAK-EY 105 (217)
T ss_pred HHHHHHHC-CCCeEEeeeeecchhH--HHHHHHHHcCCCEEEEEecCCHH-----------------HHHHHHHHHH-Hc
Confidence 33443333 4567777776655543 24677889999998776544432 2344444433 34
Q ss_pred CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEc-cCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEE
Q 013789 194 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFT 271 (436)
Q Consensus 194 ~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vh-grt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVI 271 (436)
++-+.+-+--.| +.++. .+++++.|+|.+.+| ||.....|.+.. |+.+..+++... .+.|-
T Consensus 106 ~~~v~iDl~~~~----~~~~~----~~~l~~~gvd~~~~H~g~D~q~~G~~~~---------~~~l~~ik~~~~~g~~vA 168 (217)
T COG0269 106 GKEVQIDLIGVW----DPEQR----AKWLKELGVDQVILHRGRDAQAAGKSWG---------EDDLEKIKKLSDLGAKVA 168 (217)
T ss_pred CCeEEEEeecCC----CHHHH----HHHHHHhCCCEEEEEecccHhhcCCCcc---------HHHHHHHHHhhccCceEE
Confidence 544444332222 22222 456677999999999 666544454321 444555544331 37899
Q ss_pred EeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 272 anGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
..||| +++++..+...|++.|.+||++-...+
T Consensus 169 VaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~d 200 (217)
T COG0269 169 VAGGI-TPEDIPLFKGIGADIVIVGRAITGAKD 200 (217)
T ss_pred EecCC-CHHHHHHHhcCCCCEEEECchhcCCCC
Confidence 99999 899999999999999999999866554
No 215
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=96.89 E-value=0.011 Score=57.85 Aligned_cols=166 Identities=16% Similarity=0.227 Sum_probs=90.7
Q ss_pred EEEEEcCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCcccc--------cc--CChHHHHHHHHHHh-hcc
Q 013789 127 IVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS--------LM--LDPKFVGEAMSVIA-ANT 193 (436)
Q Consensus 127 i~vQL~g~--~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~--------Ll--~~~~~l~eiv~av~-~~~ 193 (436)
++.=|... +.+.+.++++.+.+.|+|.|||.+=...+.. | |-- |- -+.+.+.++++.++ +..
T Consensus 12 li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~A---D--GpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~ 86 (259)
T PF00290_consen 12 LIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVA---D--GPVIQKASQRALKNGFTLEKIFELVKEIRKKEP 86 (259)
T ss_dssp EEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTT---S--SHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCC---C--CHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCC
Confidence 44444444 5588999999999999999999764332211 1 100 00 35677788899998 677
Q ss_pred CCcEEEEec------cCCCC---------------CC-cHHHHHHHHHHHhhcCCccEEEEccC-cc-------------
Q 013789 194 NVPVSVKCR------IGVDD---------------HD-SYNQLCDFIYKVSSLSPTRHFIIHSR-KA------------- 237 (436)
Q Consensus 194 ~iPvsvKiR------~G~~~---------------~~-~~~~~~~~la~~~e~~Gvd~I~vhgr-t~------------- 237 (436)
++|+.+-.= .|++. .+ ..++..+ +...+++.|++.|-+-.- |.
T Consensus 87 ~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~-~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~g 165 (259)
T PF00290_consen 87 DIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEE-LREAAKKHGLDLIPLVAPTTPEERIKKIAKQASG 165 (259)
T ss_dssp SSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHH-HHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SS
T ss_pred CCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHH-HHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCc
Confidence 899766421 11110 00 0111111 122334455554433211 10
Q ss_pred -----cccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 238 -----LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 238 -----~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
...|.++... .+...-.+++..+.+ ..++||..-=||.++++++++. .|||||.||++++.
T Consensus 166 FiY~vs~~GvTG~~~-~~~~~l~~~i~~ik~-~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 166 FIYLVSRMGVTGSRT-ELPDELKEFIKRIKK-HTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp EEEEESSSSSSSTTS-SCHHHHHHHHHHHHH-TTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred EEEeeccCCCCCCcc-cchHHHHHHHHHHHh-hcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 0123333221 111111344555544 4599999999999999999998 89999999999865
No 216
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.89 E-value=0.015 Score=55.62 Aligned_cols=156 Identities=10% Similarity=0.049 Sum_probs=100.6
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc---------cC---CCccccccCChHHHHHHHHHHh
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA---------GH---GCFGVSLMLDPKFVGEAMSVIA 190 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~---------r~---g~yG~~Ll~~~~~l~eiv~av~ 190 (436)
.+.+++.=+.+.++++....++.+.+.|+..||+.+-.|...-. ++ =..|+.-.-+++.+.+.+++
T Consensus 13 ~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a-- 90 (222)
T PRK07114 13 KATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL-- 90 (222)
T ss_pred HhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc--
Confidence 35667777889999999999999999999999998755532100 00 01244444455555444333
Q ss_pred hccCCcEEEEeccCCCC----------------CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCcc
Q 013789 191 ANTNVPVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 254 (436)
Q Consensus 191 ~~~~iPvsvKiR~G~~~----------------~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~ 254 (436)
|-.+.| .++++. .-+..|+.. . -+.|++.|-+..-.. .|
T Consensus 91 ---GA~FiV--sP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~----A-~~~Ga~~vKlFPA~~--~G------------- 145 (222)
T PRK07114 91 ---GANFIV--TPLFNPDIAKVCNRRKVPYSPGCGSLSEIGY----A-EELGCEIVKLFPGSV--YG------------- 145 (222)
T ss_pred ---CCCEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHH----H-HHCCCCEEEECcccc--cC-------------
Confidence 111110 111111 113344433 2 258999988875321 11
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCC-HHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 255 YEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 255 ~~~v~~l~~~~~~iPVIanGgI~s-~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
..++..+..-++++|++..|||.- .+++.+.++.|+.+|.+|+.+..+.++
T Consensus 146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~~~ 197 (222)
T PRK07114 146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKEAL 197 (222)
T ss_pred HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcccc
Confidence 456777777778999999999974 589999999999999999998866654
No 217
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.018 Score=54.61 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=84.0
Q ss_pred CCCH-HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc--CCCCCC
Q 013789 133 GSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDHD 209 (436)
Q Consensus 133 g~~p-~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~--G~~~~~ 209 (436)
|.++ +.-+.-++.+.+.|+|.||+=. .+|.-.-.+.+.+.+-+++|+++++-++.+|+=+ +.-..+
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi-----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~e 140 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVI-----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDE 140 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeee-----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHH
Confidence 4444 3333445567788999999632 0233333678999999999999886445555443 432222
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcC
Q 013789 210 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 289 (436)
Q Consensus 210 ~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~G 289 (436)
+.. ....++.++|+|+|--+. |.++. +. .+.+..+..+.+. .++.|=++|||.+.+|+..+++.|
T Consensus 141 ---e~~-~A~~i~~~aGAdFVKTST------Gf~~~-gA--T~edv~lM~~~vg--~~vgvKaSGGIrt~eda~~~i~ag 205 (228)
T COG0274 141 ---EKR-KACEIAIEAGADFVKTST------GFSAG-GA--TVEDVKLMKETVG--GRVGVKASGGIRTAEDAKAMIEAG 205 (228)
T ss_pred ---HHH-HHHHHHHHhCCCEEEcCC------CCCCC-CC--CHHHHHHHHHHhc--cCceeeccCCcCCHHHHHHHHHHh
Confidence 222 234566789999997542 22110 00 1111233333332 268899999999999999999988
Q ss_pred CCeeeehHH
Q 013789 290 AHHVMVGRA 298 (436)
Q Consensus 290 ad~VmiGRa 298 (436)
+.-+...++
T Consensus 206 a~RiGtSs~ 214 (228)
T COG0274 206 ATRIGTSSG 214 (228)
T ss_pred HHHhccccH
Confidence 655544443
No 218
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=96.88 E-value=0.0065 Score=57.57 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=63.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHH
Q 013789 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (436)
Q Consensus 202 R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~d 281 (436)
.+|+... +.+++.+ +++.|+|+|.+-.--. +..... .++..++.++.+.+.. .+|+++-||| +.+.
T Consensus 106 iIG~S~h-~~eea~~-----A~~~g~DYv~~Gpifp----T~tK~~--~~~~G~~~l~~~~~~~-~iP~vAIGGi-~~~n 171 (211)
T COG0352 106 IIGLSTH-DLEEALE-----AEELGADYVGLGPIFP----TSTKPD--APPLGLEGLREIRELV-NIPVVAIGGI-NLEN 171 (211)
T ss_pred EEEeecC-CHHHHHH-----HHhcCCCEEEECCcCC----CCCCCC--CCccCHHHHHHHHHhC-CCCEEEEcCC-CHHH
Confidence 4455443 4555433 3568899998843211 111111 1455578887766654 6999999999 8899
Q ss_pred HHHHHHcCCCeeeehHHHHhCCcc
Q 013789 282 VNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 282 a~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+.+.+++||++|.+-|+++..++.
T Consensus 172 v~~v~~~Ga~gVAvvsai~~a~d~ 195 (211)
T COG0352 172 VPEVLEAGADGVAVVSAITSAADP 195 (211)
T ss_pred HHHHHHhCCCeEEehhHhhcCCCH
Confidence 999999999999999999988775
No 219
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0033 Score=60.31 Aligned_cols=80 Identities=25% Similarity=0.327 Sum_probs=63.1
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++-.++.|+..+++---+....| .+.+.+++.++++.. ++||=.-|||+|.++++++++.|++-|.+|+.
T Consensus 37 a~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~ 106 (241)
T COG0106 37 AKKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARVIIGTA 106 (241)
T ss_pred HHHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecc
Confidence 34456699999988543321112 122378888988876 89999999999999999999999999999999
Q ss_pred HHhCCcchhh
Q 013789 299 AYQNPWYTLG 308 (436)
Q Consensus 299 ~l~~P~lf~~ 308 (436)
++.||.++.+
T Consensus 107 av~~p~~v~~ 116 (241)
T COG0106 107 AVKNPDLVKE 116 (241)
T ss_pred eecCHHHHHH
Confidence 9999998643
No 220
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.88 E-value=0.0036 Score=60.22 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=61.3
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|+|.+++---.+.. |. +.+.+.+.++.+.. .+||..-|||.+.+|+++++..||+-|.+|+.
T Consensus 41 a~~~~~~g~~~l~i~DLd~~~-~~---------~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viigt~ 109 (233)
T cd04723 41 ARAYKELGFRGLYIADLDAIM-GR---------GDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVGTE 109 (233)
T ss_pred HHHHHHCCCCEEEEEeCcccc-CC---------CccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEcce
Confidence 445567899999986544321 21 12377888888765 79999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.| .++.
T Consensus 110 ~~~~-~~~~ 117 (233)
T cd04723 110 TLPS-DDDE 117 (233)
T ss_pred eccc-hHHH
Confidence 9999 7643
No 221
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=96.87 E-value=0.0021 Score=58.50 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=67.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
+-|++++++|+-.+-.----|.+ .|+.+ |-+-|.||.++.+|.++| .+||..|.|+|- + .| ++
T Consensus 25 eQAkIAE~AGA~AVMaLervPad--iR~~G-GVaRMsDP~~I~eI~~aV----sIPVMAK~RIGH-----f---vE--Aq 87 (208)
T PF01680_consen 25 EQAKIAEEAGAVAVMALERVPAD--IRAAG-GVARMSDPKMIKEIMDAV----SIPVMAKVRIGH-----F---VE--AQ 87 (208)
T ss_dssp HHHHHHHHHT-SEEEE-SS-HHH--HHHTT-S---S--HHHHHHHHHH-----SSEEEEEEETT------H---HH--HH
T ss_pred HHHHHHHHhCCeEEEEeccCCHh--HHhcC-CccccCCHHHHHHHHHhe----Eeceeeccccce-----e---eh--hh
Confidence 45788999998776655445553 45556 889999999999998876 799999999983 2 33 67
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHH-hcCCCcEEEEeCCCCCHHHHHHHHHcCCCee
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL-RDFPDLTFTLNGGINTVDEVNAALRKGAHHV 293 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~-~~~~~iPVIanGgI~s~~da~~~l~~Gad~V 293 (436)
++|..|+|+|.=+- =++++|+.. .+- ..+ ++|++. |-++.-.+.+-+..||..+
T Consensus 88 iLealgVD~IDESE------VLTpAD~~~----------HI~K~~F-~vPFVc--GarnLGEALRRI~EGAaMI 142 (208)
T PF01680_consen 88 ILEALGVDYIDESE------VLTPADEEN----------HIDKHNF-KVPFVC--GARNLGEALRRIAEGAAMI 142 (208)
T ss_dssp HHHHTT-SEEEEET------TS--S-SS--------------GGG--SS-EEE--EESSHHHHHHHHHTT-SEE
T ss_pred hHHHhCCceecccc------ccccccccc----------cccchhC-CCCeEe--cCCCHHHHHhhHHhhhhhh
Confidence 88999999998542 123343321 111 234 788764 3346666666666777654
No 222
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.86 E-value=0.0041 Score=59.85 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=60.3
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+.+.|++.+++---.+.. |. +.+.+.+.++.+.. ..||-.-|||+|.++++++++.||+-|.+|+.
T Consensus 36 a~~~~~~ga~~lhivDLd~a~-~~---------~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~ 104 (232)
T PRK13586 36 ASKLYNEGYTRIHVVDLDAAE-GV---------GNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTI 104 (232)
T ss_pred HHHHHHCCCCEEEEEECCCcC-CC---------cchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEEECch
Confidence 445567999999986433321 11 12367788887743 24999999999999999999999999999999
Q ss_pred HHhCCcchh
Q 013789 299 AYQNPWYTL 307 (436)
Q Consensus 299 ~l~~P~lf~ 307 (436)
++.||.++.
T Consensus 105 a~~~p~~~~ 113 (232)
T PRK13586 105 VFTNFNLFH 113 (232)
T ss_pred hhCCHHHHH
Confidence 999999753
No 223
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.84 E-value=0.0041 Score=60.69 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=59.3
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|++.++|---.+ |. +.+++.+.++++ . ++||-.-|||++ ++++++++.||+-|.||+.
T Consensus 49 A~~~~~~Ga~~lHvVDLdg---g~---------~~n~~~i~~i~~-~-~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~ 113 (262)
T PLN02446 49 AEMYKRDGLTGGHVIMLGA---DD---------ASLAAALEALRA-Y-PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSY 113 (262)
T ss_pred HHHHHHCCCCEEEEEECCC---CC---------cccHHHHHHHHh-C-CCCEEEeCCccH-HHHHHHHHcCCCEEEEchH
Confidence 4556779999999863321 11 123778888887 5 799999999996 9999999999999999999
Q ss_pred HHhC----Ccchh
Q 013789 299 AYQN----PWYTL 307 (436)
Q Consensus 299 ~l~~----P~lf~ 307 (436)
++.| |.++.
T Consensus 114 Av~~~~~~p~~v~ 126 (262)
T PLN02446 114 VFRDGQIDLERLK 126 (262)
T ss_pred HHhCCCCCHHHHH
Confidence 9999 88753
No 224
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.81 E-value=0.0012 Score=63.27 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 256 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 256 ~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+.+.+.++...++|+|.-|||+|.+++.++.+.|||.|.+|..+..||++
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-H
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchH
Confidence 44556667677999999999999999999999999999999999999984
No 225
>PRK08005 epimerase; Validated
Probab=96.80 E-value=0.098 Score=49.61 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=91.3
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHCCCCE--EEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccC
Q 013789 127 IVLQIGGSNLDNLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (436)
Q Consensus 127 i~vQL~g~~p~~~~~aA~~~~~~G~d~--IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G 204 (436)
+...|.+.|+..+.+-.+.++++|+|. +|+==|.=+++. .|| -++++++++.+++|+.|=+=.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~----tfG----------~~~i~~l~~~t~~~~DvHLMv- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNI----TFG----------MKTIQAVAQQTRHPLSFHLMV- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc----ccC----------HHHHHHHHhcCCCCeEEEecc-
Confidence 567888999999999999999999995 444333222211 133 356667777677787665432
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCccEEEEccCccc----------ccC----C--CC------------------------
Q 013789 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LNG----I--SP------------------------ 244 (436)
Q Consensus 205 ~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~----------~~G----~--~~------------------------ 244 (436)
.+ .+.. +... .++|+|.|++|--... ..| . ++
T Consensus 68 -~~---P~~~---i~~~-~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~P 139 (210)
T PRK08005 68 -SS---PQRW---LPWL-AAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEP 139 (210)
T ss_pred -CC---HHHH---HHHH-HHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecC
Confidence 22 2222 2222 3588899988854210 001 0 00
Q ss_pred -CCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 245 -AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 245 -~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
......-+..++-+.++.+......|-.-||| +.+.+..+.+.|||.+.+|++++.+++
T Consensus 140 Gf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 140 DGRGQQFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRALFTTAN 199 (210)
T ss_pred CCccceecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 00001111112334444433333468899999 578899999999999999999876655
No 226
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.79 E-value=0.004 Score=66.91 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=59.7
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-----------HHHHHHHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-----------DEVNAALR 287 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-----------~da~~~l~ 287 (436)
++...+.|+|.|++-.-++...+.. . ....++.+.++.+.. .+||..-|||+|. +++.++++
T Consensus 273 a~~y~~~Gadel~~~Di~~~~~~~~--~----~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 273 AGQYYKDGADEVAFLNITGFRDFPL--G----DLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred HHHHHHcCCCEEEEEECCCCcCCcc--c----chhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 4556779999999865554211111 1 112377888888875 8999999999997 66899999
Q ss_pred cCCCeeeehHHHHhCC
Q 013789 288 KGAHHVMVGRAAYQNP 303 (436)
Q Consensus 288 ~Gad~VmiGRa~l~~P 303 (436)
.|||-|.||++++.||
T Consensus 346 ~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 346 SGADKISIGSDAVYAA 361 (538)
T ss_pred cCCCEEEEChHHHhCh
Confidence 9999999999999986
No 227
>PRK06852 aldolase; Validated
Probab=96.77 E-value=0.12 Score=51.69 Aligned_cols=190 Identities=15% Similarity=0.142 Sum_probs=101.2
Q ss_pred CCCCChHH-HHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCC---------CHHH-HHHHHH
Q 013789 76 MMDWTDNH-YRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS---------NLDN-LAKATE 144 (436)
Q Consensus 76 Magvtd~~-fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~---------~p~~-~~~aA~ 144 (436)
+.|..|.+ .-..+.+. |++-+.+- .++++... ..+ .+.|+++.|.++ +|.. +....+
T Consensus 55 ~~gl~dp~~~i~~~~~~-g~dav~~~----~G~l~~~~--~~~-----~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVe 122 (304)
T PRK06852 55 AKDDADPEHLFRIASKA-KIGVFATQ----LGLIARYG--MDY-----PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVE 122 (304)
T ss_pred CcccCCHHHHHHHHHhc-CCCEEEeC----HHHHHhhc--ccc-----CCCcEEEEECCCCCcCCcccCCccccceecHH
Confidence 66776665 33334444 46554332 44433211 111 356788888764 2311 222234
Q ss_pred HHHHCC------CCEEE--ecCCCCCCccccCCCccccccCChHHHHHHHHHHhh--ccCCcEEEE-eccCCCC-CCcHH
Q 013789 145 LANAYN------YDEIN--LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVK-CRIGVDD-HDSYN 212 (436)
Q Consensus 145 ~~~~~G------~d~Id--LN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~--~~~iPvsvK-iR~G~~~-~~~~~ 212 (436)
.+.++| +|+|- +|.|... ..+.+.++-+.+.+ ..|+|+.+- ...|-.. .+.-.
T Consensus 123 eAvrlG~~~~~~AdAV~v~v~~Gs~~---------------E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~ 187 (304)
T PRK06852 123 QVVEFKENSGLNILGVGYTIYLGSEY---------------ESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDP 187 (304)
T ss_pred HHHhcCCccCCCceEEEEEEecCCHH---------------HHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccH
Confidence 455556 77554 4555221 12334443333322 458997652 2234221 11122
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC-CHHHHH----HHHH
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVN----AALR 287 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~-s~~da~----~~l~ 287 (436)
++....+++..+.|+|.|-+---+. .+.. +-+.+.++++....+||+..||=. +.+++. .+++
T Consensus 188 ~~ia~aaRiaaELGADIVKv~y~~~--~~~g----------~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~ 255 (304)
T PRK06852 188 HLIAGAAGVAACLGADFVKVNYPKK--EGAN----------PAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIH 255 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCc--CCCC----------CHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4455567888889999998742111 0101 135566677655468999888877 434444 4445
Q ss_pred -cCCCeeeehHHHHhCCc
Q 013789 288 -KGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 288 -~Gad~VmiGRa~l~~P~ 304 (436)
.||.||.+||=.+..|.
T Consensus 256 ~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 256 ISGASGNATGRNIHQKPL 273 (304)
T ss_pred HcCCceeeechhhhcCCC
Confidence 79999999998877654
No 228
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.74 E-value=0.041 Score=54.57 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=52.8
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC--CCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG--gI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
.++.|+|+|.+.-.+.. |... ..+.++++.+.++.+.. ++|+++-| || +.+++.++++.|++.|-+++.+
T Consensus 162 ~~~tgvD~Lavs~Gt~h--g~~~----~~~~l~~e~L~~i~~~~-~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T~l 233 (282)
T TIGR01859 162 VKETGVDYLAAAIGTSH--GKYK----GEPGLDFERLKEIKELT-NIPLVLHGASGI-PEEQIKKAIKLGIAKINIDTDC 233 (282)
T ss_pred HHHHCcCEEeeccCccc--cccC----CCCccCHHHHHHHHHHh-CCCEEEECCCCC-CHHHHHHHHHcCCCEEEECcHH
Confidence 34579999997532321 1110 12456688888888775 89999999 99 5688999999999999999988
Q ss_pred H
Q 013789 300 Y 300 (436)
Q Consensus 300 l 300 (436)
.
T Consensus 234 ~ 234 (282)
T TIGR01859 234 R 234 (282)
T ss_pred H
Confidence 6
No 229
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.71 E-value=0.14 Score=50.92 Aligned_cols=157 Identities=12% Similarity=0.123 Sum_probs=93.4
Q ss_pred CCCcEEEEEc-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCcccc---ccCChHHHHHHHHHHhhc-cCCcE
Q 013789 123 EQHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS---LMLDPKFVGEAMSVIAAN-TNVPV 197 (436)
Q Consensus 123 ~~~pi~vQL~-g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~---Ll~~~~~l~eiv~av~~~-~~iPv 197 (436)
...|+++-+= |.++..+.+.++.+.++|+.+|.|-=.+- ++ +.+.+|+. .+-..+...+.+++++++ .+.++
T Consensus 77 ~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~-pk--~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~ 153 (285)
T TIGR02320 77 TTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLG-LK--KNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDF 153 (285)
T ss_pred cCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCC-Cc--cccccCCCCcccccCHHHHHHHHHHHHHhccCCCe
Confidence 4678776662 46899999999999999999999943221 11 11223332 334555556666666654 44444
Q ss_pred EEEeccC--CCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhc----CCCcEEE
Q 013789 198 SVKCRIG--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTFT 271 (436)
Q Consensus 198 svKiR~G--~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~----~~~iPVI 271 (436)
.|--|.. +.. ..+++.++. ++...++|+|.|-+++... . .+.+.++.+. ++++|++
T Consensus 154 ~IiARTDa~~~~-~~~~eAi~R-a~ay~eAGAD~ifv~~~~~------~----------~~ei~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 154 MIIARVESLILG-KGMEDALKR-AEAYAEAGADGIMIHSRKK------D----------PDEILEFARRFRNHYPRTPLV 215 (285)
T ss_pred EEEEeccccccc-CCHHHHHHH-HHHHHHcCCCEEEecCCCC------C----------HHHHHHHHHHhhhhCCCCCEE
Confidence 4444432 111 235566665 5566779999999984211 0 2333333333 3467888
Q ss_pred EeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 272 LNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 272 anGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
.+.+-...-.+.++.+.|+..|..|..++
T Consensus 216 ~~~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 216 IVPTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred EecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 87632222245667778999999986664
No 230
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.66 E-value=0.12 Score=49.60 Aligned_cols=151 Identities=15% Similarity=0.241 Sum_probs=92.6
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHCCCCE--EEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcEEEEecc
Q 013789 127 IVLQIGGSNLDNLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI 203 (436)
Q Consensus 127 i~vQL~g~~p~~~~~aA~~~~~~G~d~--IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPvsvKiR~ 203 (436)
+...|.+.|.-.+.+-.+.+++.|+|. +|+==|.=+++. .|| -++++++++. +++|+.|=+=.
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~----tfg----------~~~i~~lr~~~~~~~~dvHLMv 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL----TIG----------PMVCQALRKHGITAPIDVHLMV 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc----ccC----------HHHHHHHHhhCCCCCEEEEecc
Confidence 678889999999999999999999995 555334333221 234 3467777776 58887775443
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcc-----------ccc--------------------------------
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----------LLN-------------------------------- 240 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~-----------~~~-------------------------------- 240 (436)
++ .+...+ . +.++|+|.|++|--.. ..+
T Consensus 72 --~~---P~~~i~---~-~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~ 142 (223)
T PRK08745 72 --EP---VDRIVP---D-FADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVN 142 (223)
T ss_pred --CC---HHHHHH---H-HHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 22 222222 2 2358999999985410 000
Q ss_pred -CCCCCCCCCCCCccHHHHHHHHh---c-CCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 241 -GISPAENRTIPPLKYEYYYALLR---D-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 241 -G~~~~~~~~i~~~~~~~v~~l~~---~-~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
|.++. ..++ ..++-+.++.+ + ..++.|-.-||| +.+.+..+.+.|||.+.+|+++...++
T Consensus 143 PGf~GQ--~fi~-~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 143 PGFGGQ--AFIP-SALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred CCCCCc--cccH-HHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 11110 0111 11222333322 2 225778899999 578999999999999999999876554
No 231
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.65 E-value=0.15 Score=50.92 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=54.3
Q ss_pred cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC--CCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG--INTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 224 ~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg--I~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
+.|+|+|.+.=.+. .|.-.. ..+.++++.+.++.+...++|+++-|| | +.+++.++++.|++.|-+++.+..
T Consensus 164 ~tgvD~LAv~iG~v--HG~y~t---~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 164 ETGIDFLAAGIGNI--HGPYPE---NWEGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HcCCCEEeeccccc--cccCCC---CCCcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH
Confidence 58999997642121 011000 013467898988888764699999999 8 568899999999999999999987
Q ss_pred CCc
Q 013789 302 NPW 304 (436)
Q Consensus 302 ~P~ 304 (436)
+|.
T Consensus 238 ~~~ 240 (293)
T PRK07315 238 AFA 240 (293)
T ss_pred HHH
Confidence 443
No 232
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.62 E-value=0.04 Score=53.26 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=93.3
Q ss_pred CCCcEEEEE---cCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcE
Q 013789 123 EQHPIVLQI---GGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPV 197 (436)
Q Consensus 123 ~~~pi~vQL---~g~~p~~~~~aA~~~~~~G~d~IdLN~g-cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPv 197 (436)
.+.|+++=+ ||+++....+.++.+.++|+.+|.|.=. |.. . |..+. .++...+=+++++++ -+..+
T Consensus 68 ~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~-------~-~~~l~-~~ee~~~kI~Aa~~a~~~~~~ 138 (238)
T PF13714_consen 68 VSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGH-------G-GKQLV-SPEEMVAKIRAAVDARRDPDF 138 (238)
T ss_dssp SSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTT-------S-TT-B---HHHHHHHHHHHHHHHSSTTS
T ss_pred hcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCC-------C-CCcee-CHHHHHHHHHHHHHhccCCeE
Confidence 468999888 5777999999999999999999999755 331 1 33444 444444444444443 23234
Q ss_pred EEEeccCCC--CCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC
Q 013789 198 SVKCRIGVD--DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (436)
Q Consensus 198 svKiR~G~~--~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg 275 (436)
.+--|.... .....++..+. ++...++|+|.|-++|-.. -+.+.++.+.+ ++|+..+-+
T Consensus 139 ~I~ARTDa~~~~~~~~deaI~R-~~aY~eAGAD~ifi~~~~~-----------------~~~i~~~~~~~-~~Pl~v~~~ 199 (238)
T PF13714_consen 139 VIIARTDAFLRAEEGLDEAIER-AKAYAEAGADMIFIPGLQS-----------------EEEIERIVKAV-DGPLNVNPG 199 (238)
T ss_dssp EEEEEECHHCHHHHHHHHHHHH-HHHHHHTT-SEEEETTSSS-----------------HHHHHHHHHHH-SSEEEEETT
T ss_pred EEEEeccccccCCCCHHHHHHH-HHHHHHcCCCEEEeCCCCC-----------------HHHHHHHHHhc-CCCEEEEcC
Confidence 444444221 11235555555 3455679999999987532 34467777776 799888764
Q ss_pred CCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 276 INTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 276 I~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
...-++.++.+.|+..|.+|-.++.
T Consensus 200 -~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 200 -PGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp -SSSS-HHHHHHTTESEEEETSHHHH
T ss_pred -CCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 3236667777899999998876643
No 233
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.089 Score=49.95 Aligned_cols=152 Identities=19% Similarity=0.309 Sum_probs=96.7
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEec--CC--CCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEE
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLN--CG--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN--~g--cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvK 200 (436)
.++...|...|...+.+-.+.++++|+|.+-+. =| +|+.. +| -.+++++++.+..|+.|-
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiT------fG----------p~~v~~l~~~t~~p~DvH 67 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNIT------FG----------PPVVKALRKITDLPLDVH 67 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcc------cC----------HHHHHHHhhcCCCceEEE
Confidence 467888999999999999999999999965443 23 45432 23 367777888778888886
Q ss_pred eccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcc-----------cc---c--------------------------
Q 013789 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----------LL---N-------------------------- 240 (436)
Q Consensus 201 iR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~-----------~~---~-------------------------- 240 (436)
.=. .. .+...+ .+.++|+|.|++|.-.. .. -
T Consensus 68 LMV--~~---p~~~i~----~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllM 138 (220)
T COG0036 68 LMV--EN---PDRYIE----AFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLM 138 (220)
T ss_pred Eec--CC---HHHHHH----HHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEE
Confidence 543 22 222222 22358999999985310 00 0
Q ss_pred ----CCCCCCCCCCCCccHHHHHHHHhcCC---CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 241 ----GISPAENRTIPPLKYEYYYALLRDFP---DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 241 ----G~~~~~~~~i~~~~~~~v~~l~~~~~---~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
|.++. ..++ .-++-++++.+... ++-|-.-||| +.+.+..+.+.|||.+..|++++.++|+
T Consensus 139 sVnPGfgGQ--~Fi~-~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~ 206 (220)
T COG0036 139 SVNPGFGGQ--KFIP-EVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDY 206 (220)
T ss_pred eECCCCccc--ccCH-HHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccH
Confidence 12111 0111 11233333333222 4557788999 6788999999999999999988888773
No 234
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=96.57 E-value=0.088 Score=51.65 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=89.2
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccccc-hhhhhccc---chhhhhc-----cCCCCCc-EEEEEc-C---CCHHH-HH
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQHP-IVLQIG-G---SNLDN-LA 140 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv~~-~~l~~~~~---~~~~~~~-----~~~~~~p-i~vQL~-g---~~p~~-~~ 140 (436)
|.++-|....+++.++| .+.++|+--.. ..+.+.+- ..+.++. ......| +++-+- | .++++ +.
T Consensus 19 ~~tayD~~sArl~e~aG-~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~ 97 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAG-VDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALR 97 (264)
T ss_pred EEeCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHH
Confidence 56888999999998886 88888762211 11111110 1111111 1123344 666552 3 35565 55
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEE---------------EEeccCC
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS---------------VKCRIGV 205 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvs---------------vKiR~G~ 205 (436)
.+.+.++++|+++|.|--| +...+.++++++. ++||. .|+ .|-
T Consensus 98 ~a~r~~~~aGa~aVkiEdg--------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i-~gr 155 (264)
T PRK00311 98 NAGRLMKEAGAHAVKLEGG--------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKV-QGR 155 (264)
T ss_pred HHHHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeee-ecC
Confidence 6677778799999977643 1344555555543 77874 122 121
Q ss_pred CCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 206 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 206 ~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
++ +.+.++.+. ++.++++|++.|.+-+-. -+...++.+.. ++|+|+-|
T Consensus 156 t~-~~a~~~i~r-a~a~~eAGA~~i~lE~v~------------------~~~~~~i~~~l-~iP~igiG 203 (264)
T PRK00311 156 DE-EAAEKLLED-AKALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIG 203 (264)
T ss_pred CH-HHHHHHHHH-HHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEec
Confidence 11 224455554 567788999999985321 24455666665 89998766
No 235
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.56 E-value=0.016 Score=54.89 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=55.9
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
++.|+|++.+..--.. .... ...++..++.+.++.+...++||++-||| +.+++.+++++|++||.+-++++..
T Consensus 119 ~~~gaDYi~lgpvf~T----~tK~-~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~~~ 192 (211)
T PRK03512 119 LAARPSYIALGHVFPT----QTKQ-MPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQA 192 (211)
T ss_pred hhcCCCEEEECCccCC----CCCC-CCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhhCC
Confidence 4589999998643211 0011 01233457777777665447999999999 5899999999999999999999877
Q ss_pred Ccc
Q 013789 303 PWY 305 (436)
Q Consensus 303 P~l 305 (436)
++.
T Consensus 193 ~d~ 195 (211)
T PRK03512 193 ADW 195 (211)
T ss_pred CCH
Confidence 764
No 236
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.51 E-value=0.014 Score=59.37 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=54.3
Q ss_pred cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 224 ~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
+.|+|+|.+..--.. . + .. ...+..++.+..+++.. .+||++-||| +.+.+.+++++|+++|.++++++..+
T Consensus 258 ~~GaDYI~lGPvf~T--~-t-Kp--~~~~~Gle~l~~~~~~~-~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~ 329 (347)
T PRK02615 258 AEGADYIGVGPVFPT--P-T-KP--GKAPAGLEYLKYAAKEA-PIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAE 329 (347)
T ss_pred HcCCCEEEECCCcCC--C-C-CC--CCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCCC
Confidence 579999998543210 0 0 11 11244578888887765 7999999999 58999999999999999999998755
Q ss_pred c
Q 013789 304 W 304 (436)
Q Consensus 304 ~ 304 (436)
+
T Consensus 330 d 330 (347)
T PRK02615 330 D 330 (347)
T ss_pred C
Confidence 4
No 237
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.50 E-value=0.1 Score=49.52 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=33.0
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCP 161 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP 161 (436)
...+++.=|-+.++++..+.++.+.+.|++.||+.+-.|
T Consensus 13 ~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~ 51 (212)
T PRK05718 13 RAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTP 51 (212)
T ss_pred HHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCc
Confidence 356777778899999999999999999999999986433
No 238
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.50 E-value=0.026 Score=55.65 Aligned_cols=93 Identities=15% Similarity=0.289 Sum_probs=61.9
Q ss_pred HHHHHHHHhhccC--CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHH
Q 013789 182 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (436)
Q Consensus 182 l~eiv~av~~~~~--iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~ 259 (436)
+.+.++.+++... .+|.| +.++.+++.+ .+ ++|+|.|-+-. . +.+.+.
T Consensus 168 i~~~v~~~k~~~p~~~~I~V-------Ev~tleea~~----A~-~~GaDiI~LDn-------~-----------~~e~l~ 217 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEI-------ECESLEEAKN----AM-NAGADIVMCDN-------M-----------SVEEIK 217 (273)
T ss_pred HHHHHHHHHHhCCCCceEEE-------EeCCHHHHHH----HH-HcCCCEEEECC-------C-----------CHHHHH
Confidence 3455666665543 34444 2245555544 22 59999777531 1 144444
Q ss_pred HHHhc----CCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 260 ALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 260 ~l~~~----~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
++++. .+++.|+++||| +++.+.++.++|+|.+.+|.....-|++
T Consensus 218 ~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~~~ 266 (273)
T PRK05848 218 EVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQATWI 266 (273)
T ss_pred HHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCcc
Confidence 44432 247789999999 9999999999999999999988766664
No 239
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.47 E-value=0.016 Score=55.30 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=54.4
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
++.|+|+|.+..-.. . + .. ..+|...+.+..+.+.. ++||++-||| +.+++.+++++||++|.+-++++..
T Consensus 128 ~~~gaDYv~~Gpv~t---~-t-K~--~~~p~gl~~l~~~~~~~-~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 128 GELRPDYLFFGKLGA---D-N-KP--EAHPRNLSLAEWWAEMI-EIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred hhcCCCEEEECCCCC---C-C-CC--CCCCCChHHHHHHHHhC-CCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 458999999854311 0 1 11 12333466666666654 8999999999 8999999999999999999999876
Q ss_pred Ccc
Q 013789 303 PWY 305 (436)
Q Consensus 303 P~l 305 (436)
++.
T Consensus 199 ~dp 201 (221)
T PRK06512 199 HDP 201 (221)
T ss_pred CCH
Confidence 653
No 240
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.016 Score=59.26 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=74.5
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
-..++.++|.|.|-|... + | +...-.++++.|++.. .+.|. .- +. -+.+...
T Consensus 255 rl~ll~~aGvdvviLDSS----------q-G-----nS~~qiemik~iK~~yP~l~Vi---aG--NV-VT~~qa~----- 307 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSS----------Q-G-----NSIYQLEMIKYIKETYPDLQII---AG--NV-VTKEQAA----- 307 (503)
T ss_pred HHHHhhhcCCcEEEEecC----------C-C-----cchhHHHHHHHHHhhCCCceee---cc--ce-eeHHHHH-----
Confidence 445667889998877631 1 2 2344568888888864 33331 11 11 1222222
Q ss_pred HhhcCCccEEEEccC------cccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeee
Q 013789 221 VSSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgr------t~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~Vm 294 (436)
-+-++|+|.+.|--. |+...+-+ +...+.-++ +.+.+..+ .+|||+-|||.+..++.+++.+||+.||
T Consensus 308 nLI~aGaDgLrVGMGsGSiCiTqevma~G----rpQ~TAVy~-va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVM 381 (503)
T KOG2550|consen 308 NLIAAGADGLRVGMGSGSICITQKVMACG----RPQGTAVYK-VAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVM 381 (503)
T ss_pred HHHHccCceeEeccccCceeeeceeeecc----CCcccchhh-HHHHHHhc-CCceeecCCcCccchhHhhhhcCchhhe
Confidence 223599999988311 21111111 111111122 23344455 8999999999999999999999999999
Q ss_pred ehHHHH
Q 013789 295 VGRAAY 300 (436)
Q Consensus 295 iGRa~l 300 (436)
+|.=+-
T Consensus 382 mG~lLA 387 (503)
T KOG2550|consen 382 MGGLLA 387 (503)
T ss_pred ecceee
Confidence 996443
No 241
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.24 Score=48.23 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=90.0
Q ss_pred CCcEEEEEcCCC---HH----HHHHHHHHHHHCCCCE--EEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh--c
Q 013789 124 QHPIVLQIGGSN---LD----NLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--N 192 (436)
Q Consensus 124 ~~pi~vQL~g~~---p~----~~~~aA~~~~~~G~d~--IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~--~ 192 (436)
+.|++++|.+++ ++ .+....+-+..+|+|+ +.+|.|+... .+.+.++.+.+.. .
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e---------------~~~i~~~~~v~~~a~~ 141 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE---------------REMIENISQVVEDAHE 141 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcch---------------HHHHHHHHHHHHHHHH
Confidence 788999998873 21 1222344556789985 5567665542 3444444444433 3
Q ss_pred cCCcEEEE-eccCCCCCC---cHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCc
Q 013789 193 TNVPVSVK-CRIGVDDHD---SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL 268 (436)
Q Consensus 193 ~~iPvsvK-iR~G~~~~~---~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~i 268 (436)
.|+|+.+- .-.|-...+ ...++....+++..+.|+|.|-+- +.+ +.+-+.++++..+ +
T Consensus 142 ~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-------ytg----------~~e~F~~vv~~~~-v 203 (265)
T COG1830 142 LGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-------YTG----------DPESFRRVVAACG-V 203 (265)
T ss_pred cCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-------CCC----------ChHHHHHHHHhCC-C
Confidence 58997652 222332211 122333445677778999988752 111 1355667788775 9
Q ss_pred EEEEeCCCCC--HHHHHH----HHHcCCCeeeehHHHHhCCc
Q 013789 269 TFTLNGGINT--VDEVNA----ALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 269 PVIanGgI~s--~~da~~----~l~~Gad~VmiGRa~l~~P~ 304 (436)
||+.+||=.+ .+++.+ +++.||.||.+||=++..|.
T Consensus 204 pVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 204 PVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED 245 (265)
T ss_pred CEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC
Confidence 9999999876 344444 44589999999998766654
No 242
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.44 E-value=0.034 Score=56.35 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCc-ccccCCCCCCCCCCCCccHHH
Q 013789 179 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEY 257 (436)
Q Consensus 179 ~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt-~~~~G~~~~~~~~i~~~~~~~ 257 (436)
.+...+.+..+++..++|+.+++... +.++..+. ++.++++|+|+|.+|--. ....+..+ .......++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~-----~~~e~~~~-a~~~~~agad~ielN~scpp~~~~~~g---~~~~~~~~ei 156 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS-----SAGGWVDY-ARQIEQAGADALELNIYYLPTDPDISG---AEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC-----CHHHHHHH-HHHHHHcCCCEEEEeCCCCCCCCCCcc---ccHHHHHHHH
Confidence 45666777777777789999999652 23344443 455677899999996421 10001101 1111112455
Q ss_pred HHHHHhcCCCcEEEEe--CCCCCHHHHHHHHH-cCCCeeee
Q 013789 258 YYALLRDFPDLTFTLN--GGINTVDEVNAALR-KGAHHVMV 295 (436)
Q Consensus 258 v~~l~~~~~~iPVIan--GgI~s~~da~~~l~-~Gad~Vmi 295 (436)
+.++++. .++||++. +++.+..++.++++ .|+|+|.+
T Consensus 157 l~~v~~~-~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 157 LRAVKSA-VSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred HHHHHhc-cCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 6666555 48999976 56667777777765 99999876
No 243
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=96.44 E-value=0.72 Score=45.93 Aligned_cols=206 Identities=13% Similarity=0.093 Sum_probs=113.1
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccch-hhhhccc---chhhhhc-----cCCCCCcEEEEE---cCCC
Q 013789 68 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSN 135 (436)
Q Consensus 68 ~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~-~l~~~~~---~~~~~~~-----~~~~~~pi~vQL---~g~~ 135 (436)
++.++++| |+-|.-=.+++.+.| ...++|--.... .+...+- ....++. ....+.|+++=+ +|+.
T Consensus 13 ~~~~~~~p--g~~D~lSAri~e~aG-f~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~ 89 (290)
T TIGR02321 13 SGRLFTAM--AAHNPLVAKLAEQAG-FGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNA 89 (290)
T ss_pred CCCCEEec--cccCHHHHHHHHHcC-CCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCc
Confidence 34567776 666766677777775 555555432222 1211110 0111111 123567888887 4666
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCC-CCCccccCCCc--cccccCChHHHHHHHHHHhh-ccCCcEEEEeccCCC-CCCc
Q 013789 136 LDNLAKATELANAYNYDEINLNCGC-PSPKVAGHGCF--GVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIGVD-DHDS 210 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdLN~gc-P~~~v~r~g~y--G~~Ll~~~~~l~eiv~av~~-~~~iPvsvKiR~G~~-~~~~ 210 (436)
+ ...+.++.++++|+.+|.|.=.. |.. .+.+ |..-+-.++...+-++++++ ..+.++.+--|.... ....
T Consensus 90 ~-~v~~tV~~~~~aGvagi~IEDq~~pk~----cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g 164 (290)
T TIGR02321 90 V-NVHYVVPQYEAAGASAIVMEDKTFPKD----TSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG 164 (290)
T ss_pred H-HHHHHHHHHHHcCCeEEEEeCCCCCcc----cccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCC
Confidence 6 58899999999999999996542 221 1111 21122344444444454444 345556665565322 1123
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeC---CCCCHHHHHHHH
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNG---GINTVDEVNAAL 286 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanG---gI~s~~da~~~l 286 (436)
.++..+. ++...++|+|.|-+++... +.+.+.++++.+. .+||+.+. ...+.+ ++.
T Consensus 165 ~deAI~R-a~aY~eAGAD~ifv~~~~~----------------~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~---~l~ 224 (290)
T TIGR02321 165 QQEAVRR-GQAYEEAGADAILIHSRQK----------------TPDEILAFVKSWPGKVPLVLVPTAYPQLTEA---DIA 224 (290)
T ss_pred HHHHHHH-HHHHHHcCCCEEEecCCCC----------------CHHHHHHHHHhcCCCCCeEEecCCCCCCCHH---HHH
Confidence 4555555 4556679999999986311 1455667777653 36886543 233443 344
Q ss_pred HcC-CCeeeehHHHHh
Q 013789 287 RKG-AHHVMVGRAAYQ 301 (436)
Q Consensus 287 ~~G-ad~VmiGRa~l~ 301 (436)
+.| ...|..|...+.
T Consensus 225 ~lg~~~~v~~g~~~~~ 240 (290)
T TIGR02321 225 ALSKVGIVIYGNHAIR 240 (290)
T ss_pred HhcCCcEEEEChHHHH
Confidence 456 666777755543
No 244
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.37 E-value=0.011 Score=54.42 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=49.8
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
+.+.|+|++.+..--.. .+ . ...++..++.+.++.+.. ++||++-||| +++++.+++++||+||.+-|++
T Consensus 111 a~~~g~dYv~~gpvf~T---~s-k--~~~~~~g~~~l~~~~~~~-~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 111 AEELGADYVFLGPVFPT---SS-K--PGAPPLGLDGLREIARAS-PIPVYALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp HHHCTTSEEEEETSS-----SS-S--SS-TTCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred hhhcCCCEEEECCccCC---CC-C--ccccccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 34689999998653211 11 1 112556688888888776 7999999999 7899999999999999998874
No 245
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.36 E-value=0.11 Score=52.29 Aligned_cols=162 Identities=12% Similarity=0.042 Sum_probs=92.6
Q ss_pred CcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchh-hhhccc---chhhhhc-----cCCCCCcEEE-EE-c---CC
Q 013789 69 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQQG---NLDRFLA-----FSPEQHPIVL-QI-G---GS 134 (436)
Q Consensus 69 n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~-l~~~~~---~~~~~~~-----~~~~~~pi~v-QL-~---g~ 134 (436)
.||+ |.+.-|.++..++.++| ++++-++=....- +.+.+. ..+.++. ......|++| -+ | +.
T Consensus 35 ~kiv---mlTAyD~~sA~i~d~aG-vD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~ 110 (332)
T PLN02424 35 EPIT---MVTAYDYPSAVHVDSAG-IDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYES 110 (332)
T ss_pred CcEE---EEecCCHHHHHHHHHcC-CCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCC
Confidence 4666 77889999999999885 7877665222111 111110 0111111 1224566665 33 2 34
Q ss_pred CHHHHHHHHHH-HHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc---------C
Q 013789 135 NLDNLAKATEL-ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------G 204 (436)
Q Consensus 135 ~p~~~~~aA~~-~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~---------G 204 (436)
++++..+.|.+ +++.|+++|.|-.|. ....++++++. ..|+||.--+.+ |
T Consensus 111 s~e~av~nA~rl~~eaGa~aVKlEGg~-------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGG 170 (332)
T PLN02424 111 STDQAVESAVRMLKEGGMDAVKLEGGS-------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGG 170 (332)
T ss_pred CHHHHHHHHHHHHHHhCCcEEEECCCc-------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcC
Confidence 67776665554 478999999876442 11335555555 458887632221 2
Q ss_pred CCCC----CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 205 VDDH----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 205 ~~~~----~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
+... +...++.+. ++.++++|++.|.+-+-. -+...++.+.. +||+|+-|
T Consensus 171 ykvqGr~~~~a~~li~d-A~ale~AGAf~ivLE~Vp------------------~~la~~It~~l-~IPtIGIG 224 (332)
T PLN02424 171 FRPQGRTAESAVKVVET-ALALQEAGCFAVVLECVP------------------APVAAAITSAL-QIPTIGIG 224 (332)
T ss_pred ccccCCCHHHHHHHHHH-HHHHHHcCCcEEEEcCCc------------------HHHHHHHHHhC-CCCEEeec
Confidence 2211 223444443 667889999999986432 23444555654 89998765
No 246
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.33 Score=47.86 Aligned_cols=199 Identities=16% Similarity=0.111 Sum_probs=110.3
Q ss_pred CCChHHHHHHHHHcCCCcEEEec-cccchhhhhccc---chhhhhc-----cCCCCCcEEEEE---cCCCHHHHHHHHHH
Q 013789 78 DWTDNHYRTLARLISKHAWLYTE-MLAAETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKATEL 145 (436)
Q Consensus 78 gvtd~~fr~~~~~~Gg~gl~~te-mv~~~~l~~~~~---~~~~~~~-----~~~~~~pi~vQL---~g~~p~~~~~aA~~ 145 (436)
|+=|.--..++.+.| .--+|+- .-.+..+...+- .....+. ....+-|+.|-+ ||+ +...++.++.
T Consensus 24 g~~d~~sA~la~~aG-F~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nvartV~~ 101 (289)
T COG2513 24 GAWDAGSALLAERAG-FKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNVARTVRE 101 (289)
T ss_pred CCcCHHHHHHHHHcC-CeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHHHHHHHH
Confidence 555666667777775 5545543 222222221111 1111111 133678999888 566 9999999999
Q ss_pred HHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh-ccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhc
Q 013789 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 224 (436)
Q Consensus 146 ~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~-~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~ 224 (436)
+.++|+.+|.|-=-.-. |-+++-. |-.+....+.+.. ++++++ ..+.++.+--|...--....++.++. ++...+
T Consensus 102 ~~~aG~agi~iEDq~~p-k~cgh~~-gk~l~~~~e~v~r-IkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~R-a~AY~e 177 (289)
T COG2513 102 LEQAGAAGIHIEDQVGP-KRCGHLP-GKELVSIDEMVDR-IKAAVEARRDPDFVIIARTDALLVEGLDDAIER-AQAYVE 177 (289)
T ss_pred HHHcCcceeeeeecccc-hhcCCCC-CCCcCCHHHHHHH-HHHHHHhccCCCeEEEeehHHHHhccHHHHHHH-HHHHHH
Confidence 99999998888411000 0000001 2233333344444 444444 44556666556522112224454554 456678
Q ss_pred CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe---CCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 225 ~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan---GgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
+|+|.|-.++.+. .+.+.++++.+ ++|+.+| +|-+-.-++.++.+.|...|..|-..+
T Consensus 178 AGAD~if~~al~~-----------------~e~i~~f~~av-~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~~~ 238 (289)
T COG2513 178 AGADAIFPEALTD-----------------LEEIRAFAEAV-PVPLPANITEFGKTPLLTVAELAELGVKRVSYGLTAF 238 (289)
T ss_pred cCCcEEccccCCC-----------------HHHHHHHHHhc-CCCeeeEeeccCCCCCcCHHHHHhcCceEEEECcHHH
Confidence 9999999887542 56677777776 5777666 333222333455568999998765443
No 247
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.053 Score=51.63 Aligned_cols=127 Identities=15% Similarity=0.175 Sum_probs=79.9
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEecc-C----CCC------CCcHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI-G----VDD------HDSYN 212 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~-G----~~~------~~~~~ 212 (436)
.+-.+|+|-|.||.. -+.+|+++.++-+..-+.+ =+.|..|.+. | |.. ..+--
T Consensus 91 ~ll~aGADKVSINsa---------------Av~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~ 155 (256)
T COG0107 91 KLLRAGADKVSINSA---------------AVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGL 155 (256)
T ss_pred HHHHcCCCeeeeChh---------------HhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCc
Confidence 344579999988831 2367888887776654322 2446666653 2 111 01111
Q ss_pred HHHHHHHHHhhcCCccEEEEccC--cccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cC
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 289 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgr--t~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~G 289 (436)
+..++ ++-.++.|+--|-+..- .....|+ +.+++..+...+ +||||++||.-.+++..+++. +.
T Consensus 156 d~~~W-a~~~e~~GAGEIlLtsmD~DGtk~Gy-----------Dl~l~~~v~~~v-~iPvIASGGaG~~ehf~eaf~~~~ 222 (256)
T COG0107 156 DAVEW-AKEVEELGAGEILLTSMDRDGTKAGY-----------DLELTRAVREAV-NIPVIASGGAGKPEHFVEAFTEGK 222 (256)
T ss_pred CHHHH-HHHHHHcCCceEEEeeecccccccCc-----------CHHHHHHHHHhC-CCCEEecCCCCcHHHHHHHHHhcC
Confidence 23333 44567889988877533 2222222 267777776665 999999999999999999997 55
Q ss_pred CCeeeehHHH
Q 013789 290 AHHVMVGRAA 299 (436)
Q Consensus 290 ad~VmiGRa~ 299 (436)
||++..+.=|
T Consensus 223 adAaLAAsiF 232 (256)
T COG0107 223 ADAALAASIF 232 (256)
T ss_pred ccHHHhhhhh
Confidence 9988766533
No 248
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.26 E-value=0.0051 Score=57.66 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=89.5
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccc--------cCCCccccccCChHHHHHHHHHHhhccCC
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA--------GHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~--------r~g~yG~~Ll~~~~~l~eiv~av~~~~~i 195 (436)
+.+++.=|.+.++++..+.++.+.+.|+..||+.+-.|..... ..=..|+.-.-+.+.+.+.+++ |-
T Consensus 7 ~~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a-----GA 81 (196)
T PF01081_consen 7 ENKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA-----GA 81 (196)
T ss_dssp HHSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH-----T-
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc-----CC
Confidence 3567777888999999999999999999999998765431000 0001233333344444433332 11
Q ss_pred cEEEEeccCCCC----------------CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHH
Q 013789 196 PVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (436)
Q Consensus 196 PvsvKiR~G~~~----------------~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~ 259 (436)
.+.| .++++. .-+.+|+.. . -++|++.+-+..-... +| ..+++
T Consensus 82 ~Fiv--SP~~~~~v~~~~~~~~i~~iPG~~TptEi~~----A-~~~G~~~vK~FPA~~~-GG-------------~~~ik 140 (196)
T PF01081_consen 82 QFIV--SPGFDPEVIEYAREYGIPYIPGVMTPTEIMQ----A-LEAGADIVKLFPAGAL-GG-------------PSYIK 140 (196)
T ss_dssp SEEE--ESS--HHHHHHHHHHTSEEEEEESSHHHHHH----H-HHTT-SEEEETTTTTT-TH-------------HHHHH
T ss_pred CEEE--CCCCCHHHHHHHHHcCCcccCCcCCHHHHHH----H-HHCCCCEEEEecchhc-Cc-------------HHHHH
Confidence 1111 111111 012334332 2 2488888888653321 11 56777
Q ss_pred HHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 260 ~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
.+..-+++++++..|||. .+.+.+.++.|+.+|.+|+.+..+.++
T Consensus 141 ~l~~p~p~~~~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~~~~~i 185 (196)
T PF01081_consen 141 ALRGPFPDLPFMPTGGVN-PDNLAEYLKAGAVAVGGGSWLFPKDLI 185 (196)
T ss_dssp HHHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSHHHH
T ss_pred HHhccCCCCeEEEcCCCC-HHHHHHHHhCCCEEEEECchhcCHHHH
Confidence 887778899999999995 589999999999999999977655543
No 249
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.22 E-value=0.24 Score=50.16 Aligned_cols=166 Identities=13% Similarity=0.150 Sum_probs=89.6
Q ss_pred CCCcEEEEEcCCC--------HHHHHHHHHHHHHCCCCEEE--ecCCCCCCccccCCCccccccCChHHHHHHHHHHhh-
Q 013789 123 EQHPIVLQIGGSN--------LDNLAKATELANAYNYDEIN--LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA- 191 (436)
Q Consensus 123 ~~~pi~vQL~g~~--------p~~~~~aA~~~~~~G~d~Id--LN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~- 191 (436)
.+.|+++.|.++. .+.+....+.+-+.|+|+|- +|.|.+. ..+.+.++-+.+.+
T Consensus 124 ~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~---------------E~~ml~~l~~i~~ea 188 (348)
T PRK09250 124 HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEE---------------SRRQIEEISEAFEEA 188 (348)
T ss_pred CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHH---------------HHHHHHHHHHHHHHH
Confidence 3577888887642 12233335567788999654 4555222 12334444333332
Q ss_pred -ccCCcEEEE-eccCC--CCCC---cHHHHHHHHHHHhhcCCccEEEEccCcc-----cc-cCCCC-C--CCCCCCCccH
Q 013789 192 -NTNVPVSVK-CRIGV--DDHD---SYNQLCDFIYKVSSLSPTRHFIIHSRKA-----LL-NGISP-A--ENRTIPPLKY 255 (436)
Q Consensus 192 -~~~iPvsvK-iR~G~--~~~~---~~~~~~~~la~~~e~~Gvd~I~vhgrt~-----~~-~G~~~-~--~~~~i~~~~~ 255 (436)
..|+|+.+= ...|- .+.. +..++....+++..+.|+|.|-+---+. .. -|... . +...+.. .-
T Consensus 189 ~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~-~~ 267 (348)
T PRK09250 189 HELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDH-PI 267 (348)
T ss_pred HHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccc-hH
Confidence 458997652 22232 1211 1235666677888889999998742110 00 00000 0 0000111 12
Q ss_pred HHHHHHHhcC--CCcEEEEeCCCC-CHH----HHHHH---HHcCCCeeeehHHHHhCCc
Q 013789 256 EYYYALLRDF--PDLTFTLNGGIN-TVD----EVNAA---LRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 256 ~~v~~l~~~~--~~iPVIanGgI~-s~~----da~~~---l~~Gad~VmiGRa~l~~P~ 304 (436)
+.+..+++.. ..+||+.+||=. +.+ .+..+ ++.||.||.+||=....|.
T Consensus 268 ~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 268 DLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCc
Confidence 3344445543 158999999887 333 34456 6679999999998877665
No 250
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.15 E-value=0.19 Score=49.01 Aligned_cols=157 Identities=14% Similarity=0.144 Sum_probs=88.2
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccccc-hhhhhccc---chhhhhc-----cCCCCCc-EEEEEc-C---CCHHHHHH
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQHP-IVLQIG-G---SNLDNLAK 141 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv~~-~~l~~~~~---~~~~~~~-----~~~~~~p-i~vQL~-g---~~p~~~~~ 141 (436)
|.++-|....+++.+.| .+.++|+--.. ..+.+.+- ..+.++. ....+.| +++=+- | +++++..+
T Consensus 16 ~~~ayD~~sA~l~e~aG-~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 16 MLTAYDYPTAKLADEAG-VDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EEeCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHH
Confidence 55788999999998885 88888762221 11211110 1111111 1234567 555452 2 45777555
Q ss_pred -HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc---------CCCC----
Q 013789 142 -ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GVDD---- 207 (436)
Q Consensus 142 -aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~---------G~~~---- 207 (436)
+.+.++++|+++|.|--| +...+.+++++++ ++||.--+-+ |+..
T Consensus 95 ~a~r~~~~aGa~aVkiEd~--------------------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt 153 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG--------------------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKT 153 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCC
Confidence 455667799999977532 1344555555432 5665411111 1111
Q ss_pred CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 208 ~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
.+..+++.+. ++.++++|+|.|.+-+-. -+...++.+.. ++|+|+-|
T Consensus 154 ~~~a~~~i~r-a~a~~~AGA~~i~lE~v~------------------~~~~~~i~~~v-~iP~igiG 200 (254)
T cd06557 154 EEEAERLLED-ALALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIG 200 (254)
T ss_pred HHHHHHHHHH-HHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEec
Confidence 1124455554 566788999999985321 24556677765 89999776
No 251
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=96.14 E-value=0.2 Score=49.09 Aligned_cols=156 Identities=10% Similarity=0.113 Sum_probs=85.7
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccc-----hhhhhc-----cCCCCCcEEE-EE--cC-CCHHHHHH
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGN-----LDRFLA-----FSPEQHPIVL-QI--GG-SNLDNLAK 141 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~-----~~~~~~-----~~~~~~pi~v-QL--~g-~~p~~~~~ 141 (436)
|.+.=|....+++.++| .+.+.|+-..... ..+.+. .+.++. .....+|+++ .+ .+ .+++...+
T Consensus 19 m~tayD~~sA~i~~~aG-~d~ilvGdSlgm~-~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~ 96 (263)
T TIGR00222 19 AITAYDYSFAKLFADAG-VDVILVGDSLGMV-VLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALK 96 (263)
T ss_pred EEeccCHHHHHHHHHcC-CCEEEECccHhHH-hcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHH
Confidence 66888999999998885 8888776221111 111111 111111 1112344443 22 11 14665555
Q ss_pred -HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEE---------EEeccCCCCC---
Q 013789 142 -ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS---------VKCRIGVDDH--- 208 (436)
Q Consensus 142 -aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvs---------vKiR~G~~~~--- 208 (436)
+.+++++.|+++|.|--| ..+.+.++++.+ .++||. +..-.|+...
T Consensus 97 na~rl~~eaGa~aVkiEgg--------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt 155 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG--------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKD 155 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc--------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCC
Confidence 455667799999977643 123344454433 366665 4433334321
Q ss_pred -CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 209 -DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 209 -~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
+...++.+. ++.++++|++.|.+-+-. -+...++.+.. ++|+|+-|
T Consensus 156 ~~~a~~~i~~-A~a~e~AGA~~ivlE~vp------------------~~~a~~It~~l-~iP~iGIG 202 (263)
T TIGR00222 156 EEAAKKLLED-ALALEEAGAQLLVLECVP------------------VELAAKITEAL-AIPVIGIG 202 (263)
T ss_pred HHHHHHHHHH-HHHHHHcCCCEEEEcCCc------------------HHHHHHHHHhC-CCCEEeec
Confidence 224455554 567789999999985421 24445666665 89998765
No 252
>PRK06801 hypothetical protein; Provisional
Probab=96.12 E-value=0.18 Score=50.03 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=55.2
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC--CCCHHHHHHHHHcCCCeeeeh
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG--INTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg--I~s~~da~~~l~~Gad~VmiG 296 (436)
.+..++.|+|++.+.=.+. .|... ..++++++.+.++.+.. ++|++.-|| |. .+++.++++.|++.|-++
T Consensus 162 ~~f~~~tgvD~LAvaiGt~--Hg~y~----~~~~l~~e~l~~i~~~~-~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 162 RDFVDRTGIDALAVAIGNA--HGKYK----GEPKLDFARLAAIHQQT-GLPLVLHGGSGIS-DADFRRAIELGIHKINFY 233 (286)
T ss_pred HHHHHHHCcCEEEeccCCC--CCCCC----CCCCCCHHHHHHHHHhc-CCCEEEECCCCCC-HHHHHHHHHcCCcEEEeh
Confidence 3445578999999853332 12111 12346789888887765 899999999 85 588999999999999999
Q ss_pred HHHHh
Q 013789 297 RAAYQ 301 (436)
Q Consensus 297 Ra~l~ 301 (436)
+++..
T Consensus 234 T~~~~ 238 (286)
T PRK06801 234 TGMSQ 238 (286)
T ss_pred hHHHH
Confidence 99854
No 253
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.05 E-value=0.088 Score=52.30 Aligned_cols=95 Identities=16% Similarity=0.340 Sum_probs=61.2
Q ss_pred HHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH
Q 013789 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (436)
Q Consensus 182 l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l 261 (436)
+.+.++.+++.++. ..|+- ++. ++.+++.+. .++|+|.|-+-.- . .+.+.++
T Consensus 182 i~~av~~~r~~~~~--~~~I~--VEv-~tleea~eA-----~~~GaD~I~LDn~---------------~---~e~l~~a 233 (288)
T PRK07428 182 IGEAITRIRQRIPY--PLTIE--VET-ETLEQVQEA-----LEYGADIIMLDNM---------------P---VDLMQQA 233 (288)
T ss_pred HHHHHHHHHHhCCC--CCEEE--EEC-CCHHHHHHH-----HHcCCCEEEECCC---------------C---HHHHHHH
Confidence 44555566665441 22222 221 345555442 2599999987411 1 2223333
Q ss_pred Hh----cCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 262 LR----DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 262 ~~----~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
++ ..+++|+.++||| +.+.+.++.++|+|.+.+|+....-|++
T Consensus 234 v~~~~~~~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 234 VQLIRQQNPRVKIEASGNI-TLETIRAVAETGVDYISSSAPITRSPWL 280 (288)
T ss_pred HHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCCCcc
Confidence 22 2458999999999 7999999999999999999998877775
No 254
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=95.99 E-value=0.61 Score=44.15 Aligned_cols=180 Identities=14% Similarity=0.163 Sum_probs=99.0
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccc--cchhhhhcccchhhhhc-cCCCCCcEEEEEc-CCCHHHHHHHHHHHHHCCC
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSNLDNLAKATELANAYNY 151 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv--~~~~l~~~~~~~~~~~~-~~~~~~pi~vQL~-g~~p~~~~~aA~~~~~~G~ 151 (436)
.+|+|+..-..++.++| ++.+.-=+. ++..+. .+....+.+ +++.-.+++ +| ..+++. ..+++++++.
T Consensus 7 ICGi~~~eda~~~~~~G-ad~iGfI~~~~S~R~V~--~~~a~~i~~~~~~~i~~Vg--Vf~~~~~~~---i~~~~~~~~~ 78 (210)
T PRK01222 7 ICGITTPEDAEAAAELG-ADAIGFVFYPKSPRYVS--PEQAAELAAALPPFVKVVG--VFVNASDEE---IDEIVETVPL 78 (210)
T ss_pred ECCCCcHHHHHHHHHcC-CCEEEEccCCCCCCcCC--HHHHHHHHHhCCCCCCEEE--EEeCCCHHH---HHHHHHhcCC
Confidence 36899999888888886 554432111 111111 111122222 222223333 44 345554 4455678899
Q ss_pred CEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEE
Q 013789 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (436)
Q Consensus 152 d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~ 231 (436)
|.|+||... .++. ++.+++..++++.-.++.. +. .++... ... ...+|++-
T Consensus 79 d~vQLHg~e-----------------~~~~----~~~l~~~~~~~iik~i~v~--~~---~~l~~~-~~~--~~~~d~~L 129 (210)
T PRK01222 79 DLLQLHGDE-----------------TPEF----CRQLKRRYGLPVIKALRVR--SA---GDLEAA-AAY--YGDADGLL 129 (210)
T ss_pred CEEEECCCC-----------------CHHH----HHHHHhhcCCcEEEEEecC--CH---HHHHHH-Hhh--hccCCEEE
Confidence 999998422 2233 3344554567765555543 11 122211 111 23678888
Q ss_pred EccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCCc
Q 013789 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 232 vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 304 (436)
+.......+|.+- ..+|..+. +.. +.|++.+||| +++.+.++++ .+..+|=+.+|.-..|-
T Consensus 130 ~Ds~~~~~GGtG~-------~~dw~~l~---~~~-~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 130 LDAYVGLPGGTGK-------TFDWSLLP---AGL-AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred EcCCCCCCCCCCC-------ccchHHhh---hcc-CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceECCCC
Confidence 8755432233221 12365441 233 5699999999 8899999997 58888888888765454
No 255
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.98 E-value=0.12 Score=50.44 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=80.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCc-EEEEeccCCCCC-CcHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDH-DSYNQLCDFI 218 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iP-vsvKiR~G~~~~-~~~~~~~~~l 218 (436)
-.|++++++|+|.|-. |.....+. .| |-....-..+.+...+++|++.++.| |.+ .+++... .+.++..+..
T Consensus 23 ~sA~l~e~aG~d~i~v--Gds~~~~~-lG-~pDt~~vtl~em~~~~~~V~r~~~~p~via--D~~fg~y~~~~~~av~~a 96 (254)
T cd06557 23 PTAKLADEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDEMIYHTRAVRRGAPRALVVA--DMPFGSYQTSPEQALRNA 96 (254)
T ss_pred HHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCCeEEE--eCCCCcccCCHHHHHHHH
Confidence 4778899999999853 42221111 11 22223355677788888888888889 544 3343322 3466666666
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEE-----------EeCCCC----CH----
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-----------LNGGIN----TV---- 279 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVI-----------anGgI~----s~---- 279 (436)
.++++++|+++|.+-+... ..+.++.+++. .|||+ ..||.. +.
T Consensus 97 ~r~~~~aGa~aVkiEd~~~----------------~~~~I~al~~a--gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~ 158 (254)
T cd06557 97 ARLMKEAGADAVKLEGGAE----------------VAETIRALVDA--GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAE 158 (254)
T ss_pred HHHHHHhCCeEEEEcCcHH----------------HHHHHHHHHHc--CCCeeccccccceeeeccCCceeccCCHHHHH
Confidence 7788889999999975320 13445555543 68887 556542 23
Q ss_pred ---HHHHHHHHcCCCeeee
Q 013789 280 ---DEVNAALRKGAHHVMV 295 (436)
Q Consensus 280 ---~da~~~l~~Gad~Vmi 295 (436)
++++++.+.|||++.+
T Consensus 159 ~~i~ra~a~~~AGA~~i~l 177 (254)
T cd06557 159 RLLEDALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHHHHHHCCCCEEEE
Confidence 3344444589999875
No 256
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.87 E-value=0.062 Score=54.35 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=45.0
Q ss_pred cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 224 ~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
++|++.|.+.... |.+. .-.+.+..+++..+++||++ |.|.+.+++.++++.|||+|.+|
T Consensus 104 eagv~~I~vd~~~----G~~~--------~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 104 EAGVDVIVIDSAH----GHSV--------YVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred hcCCCEEEEECCC----CCcH--------HHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 4899999875321 2111 11566777777666688887 99999999999999999999984
No 257
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.85 E-value=0.027 Score=57.37 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=45.4
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
.++|+|.|.+..-. |.+.. -.+.+..+++.++++||| .|.|.|.+.++.+++.|||+|-+|=|
T Consensus 117 ~~agvD~ivID~a~----g~s~~--------~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 117 VEAGVDVIVIDSAH----GHSEH--------VIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHTT-SEEEEE-SS----TTSHH--------HHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHcCCCEEEccccC----ccHHH--------HHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEecc
Confidence 35899999996432 32210 145677888888889998 67899999999999999999999844
No 258
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.0046 Score=63.20 Aligned_cols=133 Identities=19% Similarity=0.193 Sum_probs=91.4
Q ss_pred EEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE
Q 013789 153 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 232 (436)
Q Consensus 153 ~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v 232 (436)
..++|++||..+-...+. +.+++..+..+.++....++..+.|+ .|+|+-....+.+ ++++ -+++.+ ++.+
T Consensus 289 l~~~~~~~p~~~~~~~~~-~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~-~~~~----~le~~~--~l~i 359 (477)
T KOG2334|consen 289 LRGIQEGCPRGKRIQAAQ-TVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTV-NLAE----RLEDLS--ALAI 359 (477)
T ss_pred hhhhhccCchhhHhhcch-hHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhh-hHhh----hHHhcc--chhh
Confidence 367789999987655443 77788888888888888888888888 8899865554332 2222 335555 6778
Q ss_pred ccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcch
Q 013789 233 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (436)
Q Consensus 233 hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 306 (436)
|+|....+-..++. |+.....+.+. .+|+++||.+....+- .+.++..+|..++...+-.++
T Consensus 360 ~~r~~f~r~~~pa~--------~~~~k~~l~~~-~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~ 421 (477)
T KOG2334|consen 360 HGRKIFDRPTDPAK--------WDTPKMVLADL-CVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIW 421 (477)
T ss_pred hhcccccccCCCcC--------CCCHHHHHHHh-hhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhcccc
Confidence 88864333222333 33333444444 7899999999887764 457889999999998777664
No 259
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.78 E-value=0.43 Score=47.20 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=110.4
Q ss_pred CChHHHHHHHH---HcCCCcEEEeccccchhhhhcccchhhh----hccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCC
Q 013789 79 WTDNHYRTLAR---LISKHAWLYTEMLAAETIIYQQGNLDRF----LAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 151 (436)
Q Consensus 79 vtd~~fr~~~~---~~Gg~gl~~temv~~~~l~~~~~~~~~~----~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~ 151 (436)
+....++.+++ ..|=.|+++.+... +...-..+...++ .+..+...|+++++.+.+.++..+.++.++++|+
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~GstG-E~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGSTG-EFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESSTTT-TGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCc-ccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCc
Confidence 44556666653 44534555555433 3211111111222 2233456799999999999999999999999999
Q ss_pred CEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc---CCCCCCcHHHHHHHHHHHhhcCCcc
Q 013789 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---GVDDHDSYNQLCDFIYKVSSLSPTR 228 (436)
Q Consensus 152 d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~---G~~~~~~~~~~~~~la~~~e~~Gvd 228 (436)
|++-+-. |... . ...+-+.+-.+.|.+.+++|+.+=-.. |.+- +.+. +.++++--.+-
T Consensus 98 d~v~v~~--P~~~-----~------~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~l--s~~~----l~~L~~~~nv~ 158 (289)
T PF00701_consen 98 DAVLVIP--PYYF-----K------PSQEELIDYFRAIADATDLPIIIYNNPARTGNDL--SPET----LARLAKIPNVV 158 (289)
T ss_dssp SEEEEEE--STSS-----S------CCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTS--HHHH----HHHHHTSTTEE
T ss_pred eEEEEec--cccc-----c------chhhHHHHHHHHHHhhcCCCEEEEECCCccccCC--CHHH----HHHHhcCCcEE
Confidence 9998753 4321 1 345667888888888889999875543 3321 2222 23444422333
Q ss_pred EEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcchh
Q 013789 229 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 307 (436)
Q Consensus 229 ~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 307 (436)
++...+. ++..+.++.+.. .++ .+.+| +-..+...+..|++|++.|.+.+ -|+++.
T Consensus 159 giK~s~~------------------~~~~~~~~~~~~~~~~-~v~~G---~d~~~~~~l~~G~~G~is~~~n~-~P~~~~ 215 (289)
T PF00701_consen 159 GIKDSSG------------------DLERLIQLLRAVGPDF-SVFCG---DDELLLPALAAGADGFISGLANV-FPELIV 215 (289)
T ss_dssp EEEESSS------------------BHHHHHHHHHHSSTTS-EEEES---SGGGHHHHHHTTSSEEEESGGGT-HHHHHH
T ss_pred EEEcCch------------------hHHHHHHHhhhcccCe-eeecc---ccccccccccccCCEEEEccccc-ChHHHH
Confidence 3332211 133344444443 244 35566 33346677789999999998765 456544
Q ss_pred hhhhhhhcC
Q 013789 308 GHVDTAIYG 316 (436)
Q Consensus 308 ~~~~~~~~g 316 (436)
+.++....|
T Consensus 216 ~i~~~~~~G 224 (289)
T PF00701_consen 216 EIYDAFQAG 224 (289)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 444433334
No 260
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.74 E-value=0.56 Score=45.04 Aligned_cols=145 Identities=10% Similarity=0.044 Sum_probs=90.6
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR 202 (436)
.+.|+=+-|...+|+.+. +.+.++|+|.|-+|.=.. .+ +.++++.+++. |.++-+-+.
T Consensus 67 ~~~~~DvHLMv~~P~~~i---~~~~~aGad~It~H~Ea~---------------~~---~~~~l~~Ik~~-g~~~kaGla 124 (228)
T PRK08091 67 THCFKDVHLMVRDQFEVA---KACVAAGADIVTLQVEQT---------------HD---LALTIEWLAKQ-KTTVLIGLC 124 (228)
T ss_pred CCCCEEEEeccCCHHHHH---HHHHHhCCCEEEEcccCc---------------cc---HHHHHHHHHHC-CCCceEEEE
Confidence 367899999999999765 566778999999986421 11 44566666554 553333333
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHH---hcC-CCcEEEEeCCCCC
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RDF-PDLTFTLNGGINT 278 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~---~~~-~~iPVIanGgI~s 278 (436)
++.. ...+.+.+ ++. -+|.|.+..-+. |.++.. .++ ..++-+.++. ++. .++.|-.-|||.
T Consensus 125 lnP~--Tp~~~i~~----~l~--~vD~VLiMtV~P---GfgGQ~--f~~-~~l~KI~~lr~~~~~~~~~~~IeVDGGI~- 189 (228)
T PRK08091 125 LCPE--TPISLLEP----YLD--QIDLIQILTLDP---RTGTKA--PSD-LILDRVIQVENRLGNRRVEKLISIDGSMT- 189 (228)
T ss_pred ECCC--CCHHHHHH----HHh--hcCEEEEEEECC---CCCCcc--ccH-HHHHHHHHHHHHHHhcCCCceEEEECCCC-
Confidence 3332 23333333 232 378888876665 333211 111 1133344332 222 256788999994
Q ss_pred HHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 279 VDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 279 ~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.+.+.++.+.|||.+.+|++++.+++
T Consensus 190 ~~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 190 LELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred HHHHHHHHHCCCCEEEEChhhhCCCC
Confidence 78999999999999999999877665
No 261
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=95.67 E-value=0.16 Score=53.57 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=86.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec------------cCCCCC
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------------IGVDDH 208 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR------------~G~~~~ 208 (436)
+.|+.+ +.|+++|-+..- ...||+++ +-++++++++++||-.|== .|-+-.
T Consensus 74 ~~a~~y-~~gA~aiSVlTe--------~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADav 136 (454)
T PRK09427 74 EIARVY-KHYASAISVLTD--------EKYFQGSF--------DFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAI 136 (454)
T ss_pred HHHHHH-HcCCeEEEEecC--------cCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCch
Confidence 444545 667888876632 22355443 2334566677899988721 122210
Q ss_pred C------cHHHHHHHHHHHhhcCCccEE-EEccCcccc----cC--CCCCCCCCCCCc--cHHHHHHHHhcCC-CcEEEE
Q 013789 209 D------SYNQLCDFIYKVSSLSPTRHF-IIHSRKALL----NG--ISPAENRTIPPL--KYEYYYALLRDFP-DLTFTL 272 (436)
Q Consensus 209 ~------~~~~~~~~la~~~e~~Gvd~I-~vhgrt~~~----~G--~~~~~~~~i~~~--~~~~v~~l~~~~~-~iPVIa 272 (436)
- +-+++.++ ...+...|.+.+ .||...-.. -| .-+-+|+.+.+. +.....++....+ ++.+|+
T Consensus 137 LLI~~~L~~~~l~~l-~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vs 215 (454)
T PRK09427 137 LLMLSVLDDEQYRQL-AAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVIS 215 (454)
T ss_pred hHHHHhCCHHHHHHH-HHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEE
Confidence 0 11123333 334456787776 577553210 01 011344444443 3444556655554 678899
Q ss_pred eCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 273 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 273 nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
-+||.+++|+.++.. |+|+|.||++++.+|+.
T Consensus 216 eSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~ 247 (454)
T PRK09427 216 ESGIYTHAQVRELSP-FANGFLIGSSLMAEDDL 247 (454)
T ss_pred eCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCH
Confidence 999999999999755 79999999999999985
No 262
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.59 E-value=0.097 Score=50.73 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=81.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
-.|++++++|||.+-+.-.+-.... +|--..+-..+.+.+.++.|...+.+||.+-+..|+.+. +++.+.+.+
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~~~~s~----G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~---~~~~~~v~~ 92 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAGVAASL----GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNA---LNVARTVRE 92 (243)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHhc----CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCH---HHHHHHHHH
Confidence 4678889999999887533222110 111112244567777788888888999999999987542 344454444
Q ss_pred HhhcCCccEEEEccCcc-cccCCCCCCCCCCCCcc-HHHHHHHHhcC---CCcEEEEeCCC-----CCHHHHH----HHH
Q 013789 221 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK-YEYYYALLRDF---PDLTFTLNGGI-----NTVDEVN----AAL 286 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~-~~~G~~~~~~~~i~~~~-~~~v~~l~~~~---~~iPVIanGgI-----~s~~da~----~~l 286 (436)
+ .++|+++|.+-+... ...|..+ ....+++.. .+.+...++.. ++++|++-=|. .+.+++. ++.
T Consensus 93 ~-~~~G~~gv~iED~~~~k~~g~~~-~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 93 L-EEAGAAGIHIEDQVGPKKCGHHG-GKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred H-HHcCCEEEEEecCCCCccccCCC-CCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 4 459999999954321 0011111 111122211 12222222221 36788887332 2333333 333
Q ss_pred HcCCCeeeeh
Q 013789 287 RKGAHHVMVG 296 (436)
Q Consensus 287 ~~Gad~VmiG 296 (436)
+.|||+|++=
T Consensus 171 ~AGAD~v~v~ 180 (243)
T cd00377 171 EAGADGIFVE 180 (243)
T ss_pred HcCCCEEEeC
Confidence 4899999984
No 263
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.56 E-value=0.039 Score=52.74 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=57.9
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH--cCCCeeeeh
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVG 296 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~--~Gad~VmiG 296 (436)
++.+.+.|+|.+++---.+.. | .+.+++.+.++.+. +||..-|||++.+|+++++. .||+-|.+|
T Consensus 42 a~~~~~~g~~~l~ivDLd~~~-~---------~~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rvvig 108 (221)
T TIGR00734 42 AKVIEEIGARFIYIADLDRIV-G---------LGDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRVVVA 108 (221)
T ss_pred HHHHHHcCCCEEEEEEccccc-C---------CcchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEEeec
Confidence 344557899999986443321 2 12237788888775 48999999999999999975 369999999
Q ss_pred HHHHhCCcchh
Q 013789 297 RAAYQNPWYTL 307 (436)
Q Consensus 297 Ra~l~~P~lf~ 307 (436)
+.++.||.++.
T Consensus 109 T~a~~~p~~l~ 119 (221)
T TIGR00734 109 TETLDITELLR 119 (221)
T ss_pred ChhhCCHHHHH
Confidence 99999999753
No 264
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.55 E-value=0.035 Score=52.51 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=53.1
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++.+++.|+++|++..-.....|. ++.+..+.+. .++||+.-|+|.+..+++.+++.|||+|.++..
T Consensus 37 A~~~~~~GA~~l~v~~~~~~~~g~------------~~~~~~i~~~-v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 37 AKAYEKAGAAAISVLTEPKYFQGS------------LEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVA 103 (217)
T ss_pred HHHHHHcCCCEEEEEeCccccCCC------------HHHHHHHHHh-cCCCEEECCeecCHHHHHHHHHcCCCEEEEeec
Confidence 456678999999987544322221 4555555554 489999999999999999999999999999887
Q ss_pred HHh
Q 013789 299 AYQ 301 (436)
Q Consensus 299 ~l~ 301 (436)
.+.
T Consensus 104 ~~~ 106 (217)
T cd00331 104 ALD 106 (217)
T ss_pred cCC
Confidence 654
No 265
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.48 E-value=1 Score=42.57 Aligned_cols=182 Identities=14% Similarity=0.192 Sum_probs=104.8
Q ss_pred CCCChHHHHHHHHHcCC--CcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEE
Q 013789 77 MDWTDNHYRTLARLISK--HAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEI 154 (436)
Q Consensus 77 agvtd~~fr~~~~~~Gg--~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~I 154 (436)
+|.|+..=..++..+|. .|+++.+- |+..+. .++.+++.+.-+. .+ .|-+|-+.+. .+..+++++.+.|.|
T Consensus 7 CGlt~~eda~~a~~~gad~iG~If~~~-SpR~Vs--~~~a~~i~~~v~~-~~-~VgVf~n~~~--~~i~~i~~~~~ld~V 79 (208)
T COG0135 7 CGLTRLEDAKAAAKAGADYIGFIFVPK-SPRYVS--PEQAREIASAVPK-VK-VVGVFVNESI--EEILEIAEELGLDAV 79 (208)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEEEcCC-CCCcCC--HHHHHHHHHhCCC-CC-EEEEECCCCH--HHHHHHHHhcCCCEE
Confidence 58888888888777752 13343332 222221 1122333322222 22 4555655432 245567778899999
Q ss_pred EecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEcc
Q 013789 155 NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (436)
Q Consensus 155 dLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhg 234 (436)
+||. . .+++.+.++ ++..++||.--++..-... . + ....+..-+|.+.+-.
T Consensus 80 QlHG-----------~------e~~~~~~~l----~~~~~~~v~kai~v~~~~~--~-~-----~~~~~~~~~d~~LlDa 130 (208)
T COG0135 80 QLHG-----------D------EDPEYIDQL----KEELGVPVIKAISVSEEGD--L-E-----LAAREEGPVDAILLDA 130 (208)
T ss_pred EECC-----------C------CCHHHHHHH----HhhcCCceEEEEEeCCccc--h-h-----hhhhccCCccEEEEcC
Confidence 9983 2 345555444 3333677765555532211 1 1 1112345688888865
Q ss_pred Cccc-ccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCC-CeeeehHHHHhCCcc
Q 013789 235 RKAL-LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA-HHVMVGRAAYQNPWY 305 (436)
Q Consensus 235 rt~~-~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Ga-d~VmiGRa~l~~P~l 305 (436)
.... .+|.+. +.+|..+... ....|++.+||| +++.+.+++++++ .+|=+.+|.-.+|-+
T Consensus 131 ~~~~~~GGtG~-------~fDW~~l~~~---~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~pG~ 192 (208)
T COG0135 131 KVPGLPGGTGQ-------TFDWNLLPKL---RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSPGI 192 (208)
T ss_pred CCCCCCCCCCc-------EECHHHhccc---cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccccccCCCC
Confidence 4332 234331 2236555443 136789999999 8999999999877 999999999888853
No 266
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.48 E-value=0.043 Score=58.66 Aligned_cols=213 Identities=16% Similarity=0.168 Sum_probs=112.1
Q ss_pred CCeecCCcEEEcCCCCCChHHHHHHHHHcCCCcEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHH
Q 013789 63 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKA 142 (436)
Q Consensus 63 ~~l~l~n~iilAPMagvtd~~fr~~~~~~Gg~gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~a 142 (436)
.++.|+.||+.|||..+|+..++....+.||.|++ ....+.+......++.++.-..- ...|+.+.. + ....++
T Consensus 45 ~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi-~~~~~~e~~~~~v~kvk~~e~g~-i~dpvtv~p--d--~tv~eA 118 (495)
T PTZ00314 45 RNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVI-HNNCSIEEQVEEVRKVKRFENGF-IMDPYVLSP--N--HTVADV 118 (495)
T ss_pred CCcccCCceeecCccccccHHHHHHHHHCCCeEEe-cCCCCHHHHHHHHhhcccccccc-ccCCeecCC--C--CCHHHH
Confidence 47889999999999999999999999999999998 45666665444333322220000 112322211 1 234455
Q ss_pred HHHHHHCCCCEEEe-cCC----CCCCccccCC-----Cc---cccccC---------ChHHHHHHHHHHhhc-c-CCcEE
Q 013789 143 TELANAYNYDEINL-NCG----CPSPKVAGHG-----CF---GVSLML---------DPKFVGEAMSVIAAN-T-NVPVS 198 (436)
Q Consensus 143 A~~~~~~G~d~IdL-N~g----cP~~~v~r~g-----~y---G~~Ll~---------~~~~l~eiv~av~~~-~-~iPvs 198 (436)
..++.+.+++.+=+ +-+ -...-+..++ .. =..+|. ....+.+.++.+.++ . .+||.
T Consensus 119 ~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVV 198 (495)
T PTZ00314 119 LEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIV 198 (495)
T ss_pred HHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 55666666654322 111 0000000000 00 000110 001122333333221 1 12321
Q ss_pred ------------------------EE-----eccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCC
Q 013789 199 ------------------------VK-----CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 249 (436)
Q Consensus 199 ------------------------vK-----iR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~ 249 (436)
.| ++.|.......++ .+.+ +.+-++|+|.|.+... .|.+.
T Consensus 199 d~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~-~~~~-~~l~~ag~d~i~id~a----~G~s~----- 267 (495)
T PTZ00314 199 NDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPED-IERA-AALIEAGVDVLVVDSS----QGNSI----- 267 (495)
T ss_pred cCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHH-HHHH-HHHHHCCCCEEEEecC----CCCch-----
Confidence 01 0001000011122 2322 3344699999998532 13221
Q ss_pred CCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 250 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 250 i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
..++.+.++++.++++||++ |+|.|.+++..+.+.|||+|.+|
T Consensus 268 ---~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 268 ---YQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred ---HHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 11677888888877888887 99999999999999999999764
No 267
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.44 E-value=0.45 Score=46.69 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=77.2
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCc-EEEEeccCCCCC-CcHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDH-DSYNQLCDFI 218 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iP-vsvKiR~G~~~~-~~~~~~~~~l 218 (436)
-.|++++++|+|.|=. |.....+. .| |-....-..+.+...+++|++.++.| |.+=+ ++... .+.++..+..
T Consensus 26 ~sArl~e~aG~d~i~v--Gds~~~~~-lG-~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~--pfg~y~~~~~~av~~a 99 (264)
T PRK00311 26 PFAKLFDEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDDMIYHTKAVARGAPRALVVADM--PFGSYQASPEQALRNA 99 (264)
T ss_pred HHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeC--CCCCccCCHHHHHHHH
Confidence 4788899999999854 32211111 11 12223345667777888888877776 55444 33222 3445555666
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEE-----------EeCCCC----C-----
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-----------LNGGIN----T----- 278 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVI-----------anGgI~----s----- 278 (436)
.++++++|+++|.+-+... ..+.++.+++. .|||+ ..||.. +
T Consensus 100 ~r~~~~aGa~aVkiEdg~~----------------~~~~I~al~~a--gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~ 161 (264)
T PRK00311 100 GRLMKEAGAHAVKLEGGEE----------------VAETIKRLVER--GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAE 161 (264)
T ss_pred HHHHHHhCCeEEEEcCcHH----------------HHHHHHHHHHC--CCCEeeeecccceeecccCCeeeecCCHHHHH
Confidence 7788889999999965310 03445555543 78887 344431 2
Q ss_pred --HHHHHHHHHcCCCeeee
Q 013789 279 --VDEVNAALRKGAHHVMV 295 (436)
Q Consensus 279 --~~da~~~l~~Gad~Vmi 295 (436)
.++++++.+.||+++.+
T Consensus 162 ~~i~ra~a~~eAGA~~i~l 180 (264)
T PRK00311 162 KLLEDAKALEEAGAFALVL 180 (264)
T ss_pred HHHHHHHHHHHCCCCEEEE
Confidence 23334444589999875
No 268
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.37 E-value=0.61 Score=47.86 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEE-Ee----------cCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 013789 133 GSNLDNLAKATELANAYNYDEI-NL----------NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (436)
Q Consensus 133 g~~p~~~~~aA~~~~~~G~d~I-dL----------N~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi 201 (436)
|...+++....+..++.|...+ ++ .. |+.-+ .||..+.+.+++.++- .++.||.+|.
T Consensus 165 g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lk------I~s~~~~n~~LL~~~a-----~~gkPVilk~ 232 (360)
T PRK12595 165 GLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQ------IGARNMQNFELLKAAG-----RVNKPVLLKR 232 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEE------ECcccccCHHHHHHHH-----ccCCcEEEeC
Confidence 3445667677777777776533 22 12 44444 3777788876655443 3589999987
Q ss_pred ccCCCCCCcHHHHHHHHHHHhhcCCccEEE-Ec-cCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCC-
Q 013789 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT- 278 (436)
Q Consensus 202 R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~-vh-grt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s- 278 (436)
... .+.+++...+..+ ...|..-|+ +| |-+. |. +. ....+++..+..+.+.+ ++||+.+-+=..
T Consensus 233 G~~----~t~~e~~~Ave~i-~~~Gn~~i~L~erg~s~-yp--~~----~~~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G 299 (360)
T PRK12595 233 GLS----ATIEEFIYAAEYI-MSQGNGQIILCERGIRT-YE--KA----TRNTLDISAVPILKQET-HLPVMVDVTHSTG 299 (360)
T ss_pred CCC----CCHHHHHHHHHHH-HHCCCCCEEEECCccCC-CC--CC----CCCCcCHHHHHHHHHHh-CCCEEEeCCCCCc
Confidence 653 2345555544444 457875554 45 4332 11 11 11224678888887766 899999533222
Q ss_pred ---HH--HHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 279 ---VD--EVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 279 ---~~--da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
.. -+.++...||||++|=+=+ ||..
T Consensus 300 ~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~ 329 (360)
T PRK12595 300 RRDLLLPTAKAALAIGADGVMAEVHP--DPAV 329 (360)
T ss_pred chhhHHHHHHHHHHcCCCeEEEEecC--CCCC
Confidence 22 4455667999999988765 6664
No 269
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=95.34 E-value=1.1 Score=47.63 Aligned_cols=209 Identities=17% Similarity=0.195 Sum_probs=115.2
Q ss_pred cCCeecCCcEEEcCCCCCC-hHHHHHHHHHcCCC-cEEEeccccchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHH
Q 013789 62 VARQYLPPWFSVAPMMDWT-DNHYRTLARLISKH-AWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNL 139 (436)
Q Consensus 62 i~~l~l~n~iilAPMagvt-d~~fr~~~~~~Gg~-gl~~temv~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~ 139 (436)
..++.-..||.+|-|.--| |+.|..++.++|-- -+..-+.++.+-+... ++++...-+-++-+.+|..--||--+
T Consensus 28 fsrLtGr~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~---i~ql~~~lepG~t~qfN~ifldpylw 104 (717)
T COG4981 28 FSRLTGRSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNA---IEQLVSLLEPGRTAQFNSIFLDPYLW 104 (717)
T ss_pred hhhhcCCCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHH---HHHHHhccCCCccceeeEEEechHHh
Confidence 3566677899999998654 77888888777521 1112222333322222 23333333344444555444444222
Q ss_pred H------HHHHHHHHCC--CCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcH
Q 013789 140 A------KATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (436)
Q Consensus 140 ~------~aA~~~~~~G--~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~ 211 (436)
. +..+.+...| .|+|-|..|-|.. +...|+++.+- ..|+|-.+ ... .++
T Consensus 105 ~~qig~krLv~kara~G~~I~gvvIsAGIP~l----------------e~A~ElI~~L~-~~G~~yv~-fKP-----GtI 161 (717)
T COG4981 105 KLQIGGKRLVQKARASGAPIDGVVISAGIPSL----------------EEAVELIEELG-DDGFPYVA-FKP-----GTI 161 (717)
T ss_pred hhcCChHHHHHHHHhcCCCcceEEEecCCCcH----------------HHHHHHHHHHh-hcCceeEE-ecC-----CcH
Confidence 1 2334444445 4788888888863 23455555542 23666422 122 234
Q ss_pred HHHHHHHHHHhhcCCccEEEEc--cCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH--
Q 013789 212 NQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-- 287 (436)
Q Consensus 212 ~~~~~~la~~~e~~Gvd~I~vh--grt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-- 287 (436)
+.+.. +-+++.+..---|++| |..+ +|.. .|..+..+-+....+ ++...+|-||.-|||-+++++...|.
T Consensus 162 eqI~s-vi~IAka~P~~pIilq~egGra--GGHH--SweDld~llL~tYs~-lR~~~NIvl~vGgGiGtp~~aa~YLTGe 235 (717)
T COG4981 162 EQIRS-VIRIAKANPTFPIILQWEGGRA--GGHH--SWEDLDDLLLATYSE-LRSRDNIVLCVGGGIGTPDDAAPYLTGE 235 (717)
T ss_pred HHHHH-HHHHHhcCCCCceEEEEecCcc--CCcc--chhhcccHHHHHHHH-HhcCCCEEEEecCCcCChhhcccccccc
Confidence 44333 3345555666667776 3222 2332 222222222222333 44556899999999999999999884
Q ss_pred ----cC-----CCeeeehHHHHhC
Q 013789 288 ----KG-----AHHVMVGRAAYQN 302 (436)
Q Consensus 288 ----~G-----ad~VmiGRa~l~~ 302 (436)
.| .||+.+|++++..
T Consensus 236 WSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 236 WSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred hhhhcCCCCCCcceeEechhHHhh
Confidence 23 8999999999864
No 270
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.31 E-value=0.24 Score=50.42 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=78.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCcccc-ccCChHHHHHHHHHHhhccCCcEEEEe---ccCCCCCC-------
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVS-LMLDPKFVGEAMSVIAANTNVPVSVKC---RIGVDDHD------- 209 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~-Ll~~~~~l~eiv~av~~~~~iPvsvKi---R~G~~~~~------- 209 (436)
..++.+.+.|+|+|-++.-.-. +. ... -..+.+.+.++.++.+ ..|+|+.+-+ ..|.....
T Consensus 110 ~sve~a~~~GAdAVk~lv~~~~------d~-~~~~~~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~ 181 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYYRP------DE-DDAINDRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKV 181 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEeCC------Cc-chHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCcccccccccccc
Confidence 3467788999998876542111 10 000 0022334555555443 3489976641 22222111
Q ss_pred cHHHHHHHHHHHhh--cCCccEEEEccC-c-ccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEE-eCCCCCHHHHHH
Q 013789 210 SYNQLCDFIYKVSS--LSPTRHFIIHSR-K-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-NGGINTVDEVNA 284 (436)
Q Consensus 210 ~~~~~~~~la~~~e--~~Gvd~I~vhgr-t-~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIa-nGgI~s~~da~~ 284 (436)
..+.+.. ..+.+. +.|+|.+-+--- . ....|....+.-+......+.+.++++.. .+|+|. .||+ +.+++.+
T Consensus 182 ~p~~V~~-a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~-~~P~vvlsgG~-~~~~f~~ 258 (340)
T PRK12858 182 KPEKVIK-TMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT-DLPFIFLSAGV-SPELFRR 258 (340)
T ss_pred CHHHHHH-HHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC-CCCEEEECCCC-CHHHHHH
Confidence 1223333 344555 599999987310 1 01112211100000000124466666654 677764 7887 6677776
Q ss_pred HHH----cCC--CeeeehHHHHhCCc
Q 013789 285 ALR----KGA--HHVMVGRAAYQNPW 304 (436)
Q Consensus 285 ~l~----~Ga--d~VmiGRa~l~~P~ 304 (436)
.++ .|| .||.+||....++-
T Consensus 259 ~l~~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 259 TLEFACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHHHHHcCCCccchhhhHHHHhhhh
Confidence 664 799 99999999877654
No 271
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.27 E-value=3.5 Score=40.89 Aligned_cols=204 Identities=16% Similarity=0.166 Sum_probs=111.6
Q ss_pred EEEcCCC---CCChHHHHHHHH---H-cCCCcEEEeccccchhhhhcccc---hhhhhccCCCCCcEEEEEcCCCHHHHH
Q 013789 71 FSVAPMM---DWTDNHYRTLAR---L-ISKHAWLYTEMLAAETIIYQQGN---LDRFLAFSPEQHPIVLQIGGSNLDNLA 140 (436)
Q Consensus 71 iilAPMa---gvtd~~fr~~~~---~-~Gg~gl~~temv~~~~l~~~~~~---~~~~~~~~~~~~pi~vQL~g~~p~~~~ 140 (436)
.++.|+. .+....++.++. . .|-.|+++.+...--......++ ++...+......|+++++.+.+.++..
T Consensus 10 a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai 89 (293)
T PRK04147 10 ALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQ 89 (293)
T ss_pred eeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHH
Confidence 4556664 356677777763 2 33235554443221111111111 122223344567999999999999999
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec---cCCCCCCcHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR---IGVDDHDSYNQLCDF 217 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR---~G~~~~~~~~~~~~~ 217 (436)
+.++.+++.|+|++-+-. |... . ...+-+.+-.++|.+++++||.+=-- .|.+- +.+.
T Consensus 90 ~~a~~a~~~Gad~v~v~~--P~y~-------~----~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l--~~~~---- 150 (293)
T PRK04147 90 ELAKYATELGYDAISAVT--PFYY-------P----FSFEEICDYYREIIDSADNPMIVYNIPALTGVNL--SLDQ---- 150 (293)
T ss_pred HHHHHHHHcCCCEEEEeC--CcCC-------C----CCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCC--CHHH----
Confidence 999999999999987763 3311 0 23466777888888888899877532 23221 2222
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
+.++.+.-.+-+|--. ++ ++..+.++.+..++.- +.+|. | +.+...+..|++|++.|.
T Consensus 151 l~~L~~~pnvvgiK~s---------~~---------d~~~~~~~~~~~~~~~-v~~G~--d-~~~~~~l~~G~~G~is~~ 208 (293)
T PRK04147 151 FNELFTLPKVIGVKQT---------AG---------DLYQLERIRKAFPDKL-IYNGF--D-EMFASGLLAGADGAIGST 208 (293)
T ss_pred HHHHhcCCCEEEEEeC---------CC---------CHHHHHHHHHhCCCCE-EEEee--h-HHHHHHHHcCCCEEEech
Confidence 2334332223222221 11 1334445554444554 34442 2 335556679999999886
Q ss_pred HHHhCCcchhhhhhhhhcC
Q 013789 298 AAYQNPWYTLGHVDTAIYG 316 (436)
Q Consensus 298 a~l~~P~lf~~~~~~~~~g 316 (436)
+-+ -|..+.+.++....|
T Consensus 209 ~n~-~p~~~~~l~~~~~~g 226 (293)
T PRK04147 209 YNV-NGWRARQIFEAAKAG 226 (293)
T ss_pred hhh-CHHHHHHHHHHHHCC
Confidence 654 366654444333334
No 272
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.19 E-value=1.1 Score=43.64 Aligned_cols=197 Identities=14% Similarity=0.073 Sum_probs=100.7
Q ss_pred cccCCeecCCcEEE-cCCCCCChHHHHHHH---HHcCCCcEEEeccccchhhhhc-----ccchhhhhcc-CCCCCcEEE
Q 013789 60 EMVARQYLPPWFSV-APMMDWTDNHYRTLA---RLISKHAWLYTEMLAAETIIYQ-----QGNLDRFLAF-SPEQHPIVL 129 (436)
Q Consensus 60 ~~i~~l~l~n~iil-APMagvtd~~fr~~~---~~~Gg~gl~~temv~~~~l~~~-----~~~~~~~~~~-~~~~~pi~v 129 (436)
+++++....+..++ .|-+=-|...+...+ ++.| ..++.-....+..-.+. .+.++.+.+. ...+-|++-
T Consensus 6 ~~~~~~~~~~~~~iaGPC~vEs~e~~~~~a~~~~~~g-~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T 84 (250)
T PRK13397 6 SDFQNKTCSKNNFIVGPCSIESYDHIRLAASSAKKLG-YNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS 84 (250)
T ss_pred EEecCccCCCCcEEeccCccCCHHHHHHHHHHHHHcC-CCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 34566666554444 465555555554443 4554 55665554433221111 0111222221 223445555
Q ss_pred EEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCC
Q 013789 130 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 209 (436)
Q Consensus 130 QL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~ 209 (436)
-++. ++ .+..+.+ .+|.+.| |+..+.+.+++.++- ..++||.+|.-.. .
T Consensus 85 ev~d--~~----~v~~~~e-~vdilqI---------------gs~~~~n~~LL~~va-----~tgkPVilk~G~~----~ 133 (250)
T PRK13397 85 EIMS--ER----QLEEAYD-YLDVIQV---------------GARNMQNFEFLKTLS-----HIDKPILFKRGLM----A 133 (250)
T ss_pred eeCC--HH----HHHHHHh-cCCEEEE---------------CcccccCHHHHHHHH-----ccCCeEEEeCCCC----C
Confidence 4442 22 2223333 2555432 566667766655443 3489999997643 2
Q ss_pred cHHHHHHHHHHHhhcCCccEEEE-c-cCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe----CCCCC--HHH
Q 013789 210 SYNQLCDFIYKVSSLSPTRHFII-H-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN----GGINT--VDE 281 (436)
Q Consensus 210 ~~~~~~~~la~~~e~~Gvd~I~v-h-grt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan----GgI~s--~~d 281 (436)
+.+++...+.. +.+.|..-|++ | |- . ++. ...-..+++..+..+.+.+ ++|||.. +|+++ ..-
T Consensus 134 t~~e~~~A~e~-i~~~Gn~~i~L~eRg~-~---~Y~---~~~~n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~ 204 (250)
T PRK13397 134 TIEEYLGALSY-LQDTGKSNIILCERGV-R---GYD---VETRNMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPA 204 (250)
T ss_pred CHHHHHHHHHH-HHHcCCCeEEEEcccc-C---CCC---CccccccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHH
Confidence 34455544333 34578865554 6 43 2 111 1111134466666666655 8999885 55544 345
Q ss_pred HHHHHHcCCCeeeehH
Q 013789 282 VNAALRKGAHHVMVGR 297 (436)
Q Consensus 282 a~~~l~~Gad~VmiGR 297 (436)
+.+++..||||++|-+
T Consensus 205 a~AAvA~GAdGl~IE~ 220 (250)
T PRK13397 205 AKIAKAVGANGIMMEV 220 (250)
T ss_pred HHHHHHhCCCEEEEEe
Confidence 5667779999999764
No 273
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.17 E-value=0.25 Score=48.65 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=34.0
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 266 ~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+++||.+.||| +.+.+.++.++|+|++.+|.-...-|++
T Consensus 226 ~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~~~~ 264 (269)
T cd01568 226 PRVLLEASGGI-TLENIRAYAETGVDVISTGALTHSAPAL 264 (269)
T ss_pred CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHHcCCCcc
Confidence 47999999999 7899999999999999998776666664
No 274
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.16 E-value=0.083 Score=51.26 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=54.8
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++..+++|+++|.|..-....+|. ++.+.++.+.+ ++||+..+.|.|+.++.++...|||+|.+=-+
T Consensus 67 A~~y~~~GA~aISVlTe~~~F~Gs------------~~~l~~v~~~v-~~PvL~KDFIid~~QI~ea~~~GADavLLI~~ 133 (247)
T PRK13957 67 AKTYETLGASAISVLTDQSYFGGS------------LEDLKSVSSEL-KIPVLRKDFILDEIQIREARAFGASAILLIVR 133 (247)
T ss_pred HHHHHHCCCcEEEEEcCCCcCCCC------------HHHHHHHHHhc-CCCEEeccccCCHHHHHHHHHcCCCEEEeEHh
Confidence 556788999999887544433332 77777777664 89999999999999999999999999976555
Q ss_pred HHh
Q 013789 299 AYQ 301 (436)
Q Consensus 299 ~l~ 301 (436)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 543
No 275
>PRK08999 hypothetical protein; Provisional
Probab=95.08 E-value=0.072 Score=53.21 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=50.0
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
.+.|+|++.+..--.. .+ .. ..++..++.+.++++.. ++||++-||| +.+++.+++++||++|.+-+++
T Consensus 243 ~~~~~dyi~~gpvf~t---~t-k~--~~~~~g~~~~~~~~~~~-~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 243 QRLGVDFAVLSPVQPT---AS-HP--GAAPLGWEGFAALIAGV-PLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred HhcCCCEEEECCCcCC---CC-CC--CCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 4579999998643211 01 11 12344577777777654 8999999999 9999999999999999886654
No 276
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.06 E-value=0.21 Score=47.96 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=76.0
Q ss_pred CCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCc--
Q 013789 124 QHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVP-- 196 (436)
Q Consensus 124 ~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iP-- 196 (436)
+.++++-+- ++++.. .++.+.++|+|.+.+|...+ .+.+.+++++.++.- +.-
T Consensus 53 ~~~i~~D~Kl~Di~~t~~~---~i~~~~~~gad~itvH~~ag-----------------~~~i~~~~~~~~~~~~~~~~~ 112 (230)
T PRK00230 53 GFKVFLDLKLHDIPNTVAK---AVRALAKLGVDMVNVHASGG-----------------PRMMKAAREALEPKSRPLLIA 112 (230)
T ss_pred CCCEEEEeehhhccccHHH---HHHHHHHcCCCEEEEcccCC-----------------HHHHHHHHHHhhccCCCeEEE
Confidence 345555543 455554 55556789999999985322 233444555443221 111
Q ss_pred EEEEeccCCCCC------CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEE
Q 013789 197 VSVKCRIGVDDH------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270 (436)
Q Consensus 197 vsvKiR~G~~~~------~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPV 270 (436)
|++-...+..+. .+..+.+..+++...+.|+|.+.+.+.. .. .+.+...+-.+
T Consensus 113 V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~------------------~~---~ir~~~~~~~~ 171 (230)
T PRK00230 113 VTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE------------------AA---AIREATGPDFL 171 (230)
T ss_pred EEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH------------------HH---HHHhhcCCceE
Confidence 222222111000 0123444445666677899988765321 11 22222223335
Q ss_pred EEeCCCCCHH-----------HHHHHHHcCCCeeeehHHHHhCCc
Q 013789 271 TLNGGINTVD-----------EVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 271 IanGgI~s~~-----------da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
+.++||. ++ ...++++.|||+|.+||+.+..++
T Consensus 172 ~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~d 215 (230)
T PRK00230 172 LVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAAD 215 (230)
T ss_pred EEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCC
Confidence 6677885 33 466777899999999999987776
No 277
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=95.01 E-value=0.15 Score=47.97 Aligned_cols=147 Identities=20% Similarity=0.326 Sum_probs=85.0
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHCCCC--EEEecCC--CCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 013789 127 IVLQIGGSNLDNLAKATELANAYNYD--EINLNCG--CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (436)
Q Consensus 127 i~vQL~g~~p~~~~~aA~~~~~~G~d--~IdLN~g--cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR 202 (436)
+...|.+.+...+.+..+.++++|+| .+|+-=| +|+. .+| -++++++++.+++|+.|=+=
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~------~~g----------~~~i~~i~~~~~~~~DvHLM 65 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL------TFG----------PDIIKAIRKITDLPLDVHLM 65 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-------B-----------HHHHHHHHTTSSSEEEEEEE
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc------cCC----------HHHHHHHhhcCCCcEEEEee
Confidence 56778888888899999999999999 4555444 3442 123 35667777778888888663
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCccc----------cc--------------------------------
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LN-------------------------------- 240 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~----------~~-------------------------------- 240 (436)
. .+...+ .+ . +.++|++.|++|-.... ..
T Consensus 66 v--~~P~~~---i~---~-~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV 136 (201)
T PF00834_consen 66 V--ENPERY---IE---E-FAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSV 136 (201)
T ss_dssp S--SSGGGH---HH---H-HHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS
T ss_pred e--ccHHHH---HH---H-HHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEe
Confidence 3 222221 11 1 23467777777743210 00
Q ss_pred --CCCCCCCCCCCCccHHHHHHHH---hc-CCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 241 --GISPAENRTIPPLKYEYYYALL---RD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 241 --G~~~~~~~~i~~~~~~~v~~l~---~~-~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
|.++ ...-+..++-+.++. .+ ..++.|..-|||. .+.+..+.+.|||.+.+|++++.+
T Consensus 137 ~PG~~G---q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 137 EPGFGG---QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp -TTTSS---B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHHTS
T ss_pred cCCCCc---ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCC
Confidence 1111 011111133333332 22 2368999999995 578889999999999999998753
No 278
>PRK02227 hypothetical protein; Provisional
Probab=94.98 E-value=0.46 Score=45.71 Aligned_cols=129 Identities=17% Similarity=0.126 Sum_probs=69.8
Q ss_pred HHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhh
Q 013789 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS 223 (436)
Q Consensus 144 ~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e 223 (436)
..+.+.|+|.||+-- |. .|.-|+ +.|..+.+|+..+... .|||..+-=-..+ ..++...+... .
T Consensus 14 ~~Al~~GaDiIDvK~--P~-----~GaLGA---~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~---p~~~~~aa~~~-a 77 (238)
T PRK02227 14 LEALAGGADIIDVKN--PK-----EGSLGA---NFPWVIREIVAAVPGR--KPVSATIGDVPYK---PGTISLAALGA-A 77 (238)
T ss_pred HHHHhcCCCEEEccC--CC-----CCCCCC---CCHHHHHHHHHHhCCC--CCceeeccCCCCC---chHHHHHHHHH-H
Confidence 445667999999852 22 244443 6788888888887654 6787754321111 12333322222 3
Q ss_pred cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH---Hhc-CCCcEEEEeCCCC-------CHHHHHHHH-HcCCC
Q 013789 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRD-FPDLTFTLNGGIN-------TVDEVNAAL-RKGAH 291 (436)
Q Consensus 224 ~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l---~~~-~~~iPVIanGgI~-------s~~da~~~l-~~Gad 291 (436)
.+|+|+|-| |+.+..+. ....+.+..+ ++. ..+..|++++=-. ++.++.+.. +.|++
T Consensus 78 ~~GvDyVKv--------Gl~~~~~~---~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~ 146 (238)
T PRK02227 78 ATGADYVKV--------GLYGGKTA---EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFD 146 (238)
T ss_pred hhCCCEEEE--------cCCCCCcH---HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCC
Confidence 589999987 32211110 0012222222 222 2356677665211 444555555 49999
Q ss_pred eeeehHHH
Q 013789 292 HVMVGRAA 299 (436)
Q Consensus 292 ~VmiGRa~ 299 (436)
++||=|+.
T Consensus 147 g~MlDTa~ 154 (238)
T PRK02227 147 GAMLDTAI 154 (238)
T ss_pred EEEEeccc
Confidence 99996544
No 279
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.96 E-value=0.81 Score=46.93 Aligned_cols=124 Identities=8% Similarity=-0.053 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEeccCCCCCCcHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 212 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR~G~~~~~~~~ 212 (436)
+++++.+.++.+.+.||+.+.+..|- + ..++.-.+.++++|+.+| +++.+=..-+|+ .+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~-----------~----~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~----~~ 203 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWG-----------P----GVVRRDLKACLAVREAVGPDMRLMHDGAHWYS----RA 203 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-----------c----hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcC----HH
Confidence 78889888888888999999884210 0 124556788889988775 455544444443 33
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCC-HHHHHHHHHc-CC
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRK-GA 290 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s-~~da~~~l~~-Ga 290 (436)
+..++ ++.+++.++.++. . .+++.+++...++.+.. ++||.+...+.+ ++++.++++. .+
T Consensus 204 ~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~l~~~~-~ipIa~~E~~~~~~~~~~~~i~~~a~ 265 (368)
T cd03329 204 DALRL-GRALEELGFFWYE----D------------PLREASISSYRWLAEKL-DIPILGTEHSRGALESRADWVLAGAT 265 (368)
T ss_pred HHHHH-HHHhhhcCCCeEe----C------------CCCchhHHHHHHHHhcC-CCCEEccCcccCcHHHHHHHHHhCCC
Confidence 43443 4455667766554 1 12222356666776654 899988888888 9999999984 47
Q ss_pred Ceeee
Q 013789 291 HHVMV 295 (436)
Q Consensus 291 d~Vmi 295 (436)
|.|++
T Consensus 266 d~v~~ 270 (368)
T cd03329 266 DFLRA 270 (368)
T ss_pred CEEec
Confidence 77775
No 280
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.93 E-value=0.16 Score=51.43 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 255 ~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
.+.+..+++.++++||| .|+|.|.+++..+.+.|||++.+|
T Consensus 128 ~e~I~~ir~~~p~~~vi-~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 128 INMIQHIKKHLPETFVI-AGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHhhCCCCeEE-EEecCCHHHHHHHHHcCcCEEEEC
Confidence 56677888877667654 577889999999999999999877
No 281
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.73 E-value=0.095 Score=55.73 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=46.9
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
+.++|+|.|.+..-. |.+ ..-.+.+..+.+.++++|||+ |.+.|.++++++.+.|||+|-+|=
T Consensus 233 Lv~aGVd~i~~D~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 233 LLDAGVDVLVIDTAH----GHQ--------VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred HHHhCCCEEEEeCCC----CCc--------HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECC
Confidence 345899999884211 111 011566778887788999999 889999999999999999987553
No 282
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.70 E-value=2.4 Score=42.05 Aligned_cols=116 Identities=13% Similarity=0.198 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEec-c-CCCCC-----CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCC
Q 013789 177 LDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 249 (436)
Q Consensus 177 ~~~~~l~eiv~av~~~~~iPvsvKiR-~-G~~~~-----~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~ 249 (436)
.+.+...++++.... .|++|-.-+. + |-++. ..+++..+ +.+.+++.|+|.+.+.=.|. .|.-. .
T Consensus 112 eNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~-a~~Fv~~TgvD~LAvaiGt~--HG~Y~----~ 183 (283)
T PRK07998 112 ENIAFTKEAVDFAKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEK-VKDFVERTGCDMLAVSIGNV--HGLED----I 183 (283)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeccCCCccccccccccccCCHHH-HHHHHHHhCcCeeehhcccc--ccCCC----C
Confidence 455566666665443 5777644332 1 22211 01222222 24455779999998754343 12110 1
Q ss_pred CCCccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCeeeehHHHHhC
Q 013789 250 IPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 250 i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
+.++++.+.++.+.. ++|++.-||=..+ ++++++++.|+.-|=++|.+...
T Consensus 184 -p~l~~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a 235 (283)
T PRK07998 184 -PRIDIPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKA 235 (283)
T ss_pred -CCcCHHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHH
Confidence 345688888887765 9999999987766 77888889999999999987543
No 283
>PRK08185 hypothetical protein; Provisional
Probab=94.68 E-value=1.6 Score=43.24 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=53.3
Q ss_pred HHhhcCCccEEEE-----ccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCee
Q 013789 220 KVSSLSPTRHFII-----HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHV 293 (436)
Q Consensus 220 ~~~e~~Gvd~I~v-----hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~V 293 (436)
+..++.|+|++.+ ||-.. +. ..+.++++.+.++.+.. ++|+++-||+..+ ++++++.+.|+.=|
T Consensus 156 ~f~~~TgvD~LAvaiGt~HG~y~---~~------~kp~L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 156 DFVSRTGVDTLAVAIGTAHGIYP---KD------KKPELQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKI 225 (283)
T ss_pred HHHHhhCCCEEEeccCcccCCcC---CC------CCCCcCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 3445679999999 65432 10 11345688888887765 8999999999554 67778888999999
Q ss_pred eehHHHHh
Q 013789 294 MVGRAAYQ 301 (436)
Q Consensus 294 miGRa~l~ 301 (436)
=++|.+..
T Consensus 226 Ni~T~l~~ 233 (283)
T PRK08185 226 NISSDMKY 233 (283)
T ss_pred EeChHHHH
Confidence 99988744
No 284
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=94.67 E-value=0.7 Score=47.27 Aligned_cols=147 Identities=11% Similarity=0.134 Sum_probs=83.8
Q ss_pred CCcEEEE-EcCCCH--HHH-HHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEE
Q 013789 124 QHPIVLQ-IGGSNL--DNL-AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVS 198 (436)
Q Consensus 124 ~~pi~vQ-L~g~~p--~~~-~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvs 198 (436)
+.|+++. +.|... ..+ .+.|+.++++|.. ++. |. ++..+.+|+ +.+-.+.+++.. +.||.
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~---~~~----------Gs-~~~~~~~~~-~~~~~~~vr~~~p~~p~~ 124 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELGIA---MGV----------GS-QRAALKDPE-LADSFSVVRKVAPDGLLF 124 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHHHHHHcCCC---eEe----------cc-cHhhccChh-hHHHHHHHHHHCCCceEE
Confidence 4566655 444433 223 4556666777632 121 22 333456777 777788888865 78876
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccH----HHHHHHHhcCCCcEEEE--
Q 013789 199 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY----EYYYALLRDFPDLTFTL-- 272 (436)
Q Consensus 199 vKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~----~~v~~l~~~~~~iPVIa-- 272 (436)
+=+-..-....+.+++ .++.+..++|++.+|--...... .+. +..++ +.+..+++.. ++||+.
T Consensus 125 aNl~~~~~~~~~~~~~----~~~~~~~~adal~l~l~~~qe~~-~p~-----g~~~f~~~le~i~~i~~~~-~vPVivK~ 193 (352)
T PRK05437 125 ANLGAVQLYGYGVEEA----QRAVEMIEADALQIHLNPLQELV-QPE-----GDRDFRGWLDNIAEIVSAL-PVPVIVKE 193 (352)
T ss_pred eecCccccCCCCHHHH----HHHHHhcCCCcEEEeCccchhhc-CCC-----CcccHHHHHHHHHHHHHhh-CCCEEEEe
Confidence 6443321111122333 33455678999999853210000 000 00113 4566666655 899996
Q ss_pred eCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 273 NGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 273 nGgI~s~~da~~~l~~Gad~VmiG 296 (436)
+|.-.+.++++.+.+.|+|+|.++
T Consensus 194 ~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 194 VGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred CCCCCcHHHHHHHHHcCCCEEEEC
Confidence 666678999988888999999884
No 285
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.65 E-value=0.66 Score=44.91 Aligned_cols=131 Identities=9% Similarity=0.024 Sum_probs=80.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC-CcEEEEeccCCCCCCcHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIY 219 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~-iPvsvKiR~G~~~~~~~~~~~~~la 219 (436)
-.|++++++|||.|-+.-..... .. +|-....-..+.+...+++|++.+. .||.+=+..|+.. +.++..+.+.
T Consensus 23 ~sA~i~e~aG~dai~v~~s~~a~-~~---G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~--~~~~~~~~~~ 96 (240)
T cd06556 23 SMAKQFADAGLNVMLVGDSQGMT-VA---GYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYG--APTAAFELAK 96 (240)
T ss_pred HHHHHHHHcCCCEEEEChHHHHH-hc---CCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCc--CHHHHHHHHH
Confidence 46788899999998875322210 00 1111112356677778888888775 7999998888764 3345555555
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC---------------CHHH---
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---------------TVDE--- 281 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~---------------s~~d--- 281 (436)
++.+ +|+++|.+-+... ..+.+..+++. .+||++==|.. +.++
T Consensus 97 ~l~~-aGa~gv~iED~~~----------------~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ 157 (240)
T cd06556 97 TFMR-AGAAGVKIEGGEW----------------HIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQ 157 (240)
T ss_pred HHHH-cCCcEEEEcCcHH----------------HHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHH
Confidence 5554 9999999965210 02334455443 58888776652 1223
Q ss_pred ----HHHHHHcCCCeeeeh
Q 013789 282 ----VNAALRKGAHHVMVG 296 (436)
Q Consensus 282 ----a~~~l~~Gad~VmiG 296 (436)
+.++.+.|||++.+=
T Consensus 158 ai~Ra~ay~~AGAd~i~~e 176 (240)
T cd06556 158 LIADALAYAPAGADLIVME 176 (240)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 333334899999984
No 286
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.64 E-value=0.18 Score=50.83 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=47.8
Q ss_pred HHHhh-cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 219 YKVSS-LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 219 a~~~e-~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
.++++ .+|+|.|++.-- +|.+.. -.+.+..+++.+|+++ |..|.|.|++.++++++.|||+|=+|=
T Consensus 114 ~~L~~~~~g~D~iviD~A----hGhs~~--------~i~~ik~ik~~~P~~~-vIaGNV~T~e~a~~Li~aGAD~vKVGI 180 (346)
T PRK05096 114 KQILALSPALNFICIDVA----NGYSEH--------FVQFVAKAREAWPDKT-ICAGNVVTGEMVEELILSGADIVKVGI 180 (346)
T ss_pred HHHHhcCCCCCEEEEECC----CCcHHH--------HHHHHHHHHHhCCCCc-EEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 44444 379999998421 132211 1566778888888887 557999999999999999999986554
Q ss_pred H
Q 013789 298 A 298 (436)
Q Consensus 298 a 298 (436)
|
T Consensus 181 G 181 (346)
T PRK05096 181 G 181 (346)
T ss_pred c
Confidence 3
No 287
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.63 E-value=0.73 Score=46.47 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=92.6
Q ss_pred hhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCC
Q 013789 116 RFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (436)
Q Consensus 116 ~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i 195 (436)
.+.+.+..+.||++ +...|. -.|+++.++|+|.|=+.-.-. .+. -+|-+.+--..+.+...+++|++....
T Consensus 26 ~l~~~k~~g~kivm-lTAyD~----~sA~i~d~aGvD~ILVGDSlg--mv~--lG~~~T~~Vtld~mi~H~~aV~Rga~~ 96 (332)
T PLN02424 26 TLRQKYRRGEPITM-VTAYDY----PSAVHVDSAGIDVCLVGDSAA--MVV--HGHDTTLPITLDEMLVHCRAVARGANR 96 (332)
T ss_pred HHHHHHhCCCcEEE-EecCCH----HHHHHHHHcCCCEEEECCcHH--HHh--cCCCCCCCcCHHHHHHHHHHHhccCCC
Confidence 34444445555442 333333 478889999999886642211 111 123333445667788888888888888
Q ss_pred cEEE-EeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEE---
Q 013789 196 PVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT--- 271 (436)
Q Consensus 196 Pvsv-KiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVI--- 271 (436)
|+.| =+..|... .+.++..+...+++.++|+++|-+-|... ...+.+..+++. .|||+
T Consensus 97 a~vVaDmPfgSY~-~s~e~av~nA~rl~~eaGa~aVKlEGg~~---------------~~~~~I~~l~~~--GIPV~gHi 158 (332)
T PLN02424 97 PLLVGDLPFGSYE-SSTDQAVESAVRMLKEGGMDAVKLEGGSP---------------SRVTAAKAIVEA--GIAVMGHV 158 (332)
T ss_pred CEEEeCCCCCCCC-CCHHHHHHHHHHHHHHhCCcEEEECCCcH---------------HHHHHHHHHHHc--CCCEEEee
Confidence 8877 56666332 34566666667777789999999976521 014556677643 79998
Q ss_pred --------EeCCC----CCHH-------HHHHHHHcCCCeeee
Q 013789 272 --------LNGGI----NTVD-------EVNAALRKGAHHVMV 295 (436)
Q Consensus 272 --------anGgI----~s~~-------da~~~l~~Gad~Vmi 295 (436)
.-||- .+.+ ++.++.+.||+++.+
T Consensus 159 GLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivL 201 (332)
T PLN02424 159 GLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVL 201 (332)
T ss_pred cccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 23551 1333 344444489998875
No 288
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.62 E-value=0.6 Score=43.39 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=62.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCC-----CcHHHH
Q 013789 140 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSYNQL 214 (436)
Q Consensus 140 ~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~-----~~~~~~ 214 (436)
.+.|+-+++-|+.+|-+|- + +=++++++.+++||.=-+...+.+. .+.+++
T Consensus 2 ~~mA~Aa~~gGA~giR~~~-----------------------~-~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev 57 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG-----------------------V-EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEV 57 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES-----------------------H-HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHH
T ss_pred HHHHHHHHHCCceEEEcCC-----------------------H-HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHH
Confidence 4566667778888887661 1 3356788888999753222222221 134443
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeee
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~Vm 294 (436)
.+ + -++|+|.|.+.+..+. + +..-.+++.++.+.+ +..-.||.|.+++..+.+.|+|.|.
T Consensus 58 ~~----l-~~aGadIIAlDaT~R~---------R--p~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 58 DA----L-AEAGADIIALDATDRP---------R--PETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp HH----H-HHCT-SEEEEE-SSSS------------SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred HH----H-HHcCCCEEEEecCCCC---------C--CcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEE
Confidence 32 3 3599999998763321 1 111145666666654 5667799999999999999999864
No 289
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.62 E-value=0.3 Score=48.11 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=47.1
Q ss_pred cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 224 ~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
++|+|+|-+-.- ..+.+.++++... ++||.+.||| +.+.+.++.++|+|++.+|+-...-
T Consensus 200 ~~gaDyI~ld~~------------------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 200 EAGADIIMLDNM------------------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred HcCCCEEEECCc------------------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeecCC
Confidence 589999987321 1344555555432 6999999999 7999999999999999999966644
Q ss_pred Ccc
Q 013789 303 PWY 305 (436)
Q Consensus 303 P~l 305 (436)
|++
T Consensus 261 ~~~ 263 (268)
T cd01572 261 PAL 263 (268)
T ss_pred Ccc
Confidence 543
No 290
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=94.56 E-value=0.44 Score=46.79 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=57.3
Q ss_pred HHHHHHhhccC--CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH
Q 013789 184 EAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (436)
Q Consensus 184 eiv~av~~~~~--iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l 261 (436)
.-++.+|+.++ .+|.+-+ ++.+++.+ +.+.|+|+|-+-.- ..+.+.+.
T Consensus 166 ~av~~~r~~~~~~~~Igvev-------~t~eea~~-----A~~~gaDyI~ld~~------------------~~e~lk~~ 215 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEV-------ESLEEAEE-----AAEAGADIIMLDNM------------------KPEEIKEA 215 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEe-------CCHHHHHH-----HHHcCCCEEEECCC------------------CHHHHHHH
Confidence 44555666543 3333322 24555433 24699999887321 12334444
Q ss_pred HhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 262 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 262 ~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
++.. ..+||.+.||| +.+.+.+..++|+|++.+|.-...-|++
T Consensus 216 v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait~sa~~~ 259 (265)
T TIGR00078 216 VQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISSGALTHSVPAL 259 (265)
T ss_pred HHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHHcCCCcc
Confidence 4433 14899999999 7999999999999999996544445554
No 291
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=94.55 E-value=1.2 Score=45.58 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc--CCCCCCcHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDHDSYN 212 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~--G~~~~~~~~ 212 (436)
.++.+.++++.+.+.||+.+-+..|++... .-.+.++++|++++-.+.+-+-. +|+ .+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~----------------~d~~~v~avRe~~g~~~~l~iDan~~~~----~~ 202 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD----------------EDLERVRALREAVGDDVRLMVDANGGWT----LE 202 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH----------------HHHHHHHHHHHHhCCCceEEEeCCCCcC----HH
Confidence 678888888888889999999998888642 34567778888776434333333 343 22
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcC-CC
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~G-ad 291 (436)
+..+ +++.+++.++.++- ..+++-+.+...++.+.. ++||.+.=-+.+..|+.++++.| +|
T Consensus 203 ~A~~-~~~~l~~~~l~~iE----------------eP~~~~d~~~~~~l~~~~-~~PIa~gEs~~~~~~~~~l~~~~a~d 264 (372)
T COG4948 203 EAIR-LARALEEYGLEWIE----------------EPLPPDDLEGLRELRAAT-STPIAAGESVYTRWDFRRLLEAGAVD 264 (372)
T ss_pred HHHH-HHHHhcccCcceEE----------------CCCCccCHHHHHHHHhcC-CCCEecCcccccHHHHHHHHHcCCCC
Confidence 2233 34556667765554 123344466677777765 59999999999999999999977 67
Q ss_pred eee
Q 013789 292 HVM 294 (436)
Q Consensus 292 ~Vm 294 (436)
.|+
T Consensus 265 iv~ 267 (372)
T COG4948 265 IVQ 267 (372)
T ss_pred eec
Confidence 665
No 292
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.51 E-value=1.6 Score=42.94 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=65.2
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE-ccCcccccCCCCCCCCC
Q 013789 171 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRT 249 (436)
Q Consensus 171 yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v-hgrt~~~~G~~~~~~~~ 249 (436)
.|+..+.+.+++.++ ..++.||.+|..... +.+++...+. .+...|...+++ |-.... ..+..
T Consensus 116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~----s~~e~~~A~e-~i~~~Gn~~i~L~~rG~~t------~~~Y~ 179 (266)
T PRK13398 116 IGSRNMQNFELLKEV-----GKTKKPILLKRGMSA----TLEEWLYAAE-YIMSEGNENVVLCERGIRT------FETYT 179 (266)
T ss_pred ECcccccCHHHHHHH-----hcCCCcEEEeCCCCC----CHHHHHHHHH-HHHhcCCCeEEEEECCCCC------CCCCC
Confidence 477777887766655 356899999976532 3445544433 345678765554 421110 01111
Q ss_pred CCCccHHHHHHHHhcCCCcEEEEe-CCCCC-----HHHHHHHHHcCCCeeeehH
Q 013789 250 IPPLKYEYYYALLRDFPDLTFTLN-GGINT-----VDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 250 i~~~~~~~v~~l~~~~~~iPVIan-GgI~s-----~~da~~~l~~Gad~VmiGR 297 (436)
...+++..+..+.+.+ ++||+.. .=... ...+.++...||||+||=+
T Consensus 180 ~~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~ 232 (266)
T PRK13398 180 RNTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEV 232 (266)
T ss_pred HHHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEec
Confidence 1234466666666554 7999983 32223 5666777779999999764
No 293
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.50 E-value=0.48 Score=46.87 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=60.6
Q ss_pred HHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH
Q 013789 182 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (436)
Q Consensus 182 l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l 261 (436)
+.+-++.+|+..+-.. | +|+.. ++.+++.+ +.+.|+|+|.+.. .+ .+.+.++
T Consensus 174 ~~~~v~~aR~~~~~~~--~--Igvsv-~tleea~~-----A~~~gaDyI~lD~---------------~~---~e~l~~~ 225 (277)
T PRK08072 174 ITKAVTSVREKLGHMV--K--IEVET-ETEEQVRE-----AVAAGADIIMFDN---------------RT---PDEIREF 225 (277)
T ss_pred HHHHHHHHHHhCCCCC--E--EEEEe-CCHHHHHH-----HHHcCCCEEEECC---------------CC---HHHHHHH
Confidence 4455556666554211 1 22222 24444433 2359999997720 11 4555565
Q ss_pred HhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 262 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 262 ~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
++.. ..+||.+.||| +.+.+.+..++|+|+|.+|.-...-|++
T Consensus 226 ~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~sa~~~ 269 (277)
T PRK08072 226 VKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTHSVKAL 269 (277)
T ss_pred HHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCCccc
Confidence 5543 25888899999 8999999999999999999977655664
No 294
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.50 E-value=0.19 Score=52.41 Aligned_cols=76 Identities=11% Similarity=-0.002 Sum_probs=52.4
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC--------CCcEEEEeCCCCCHHHHHHHHHcCCCeee
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--------PDLTFTLNGGINTVDEVNAALRKGAHHVM 294 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~--------~~iPVIanGgI~s~~da~~~l~~Gad~Vm 294 (436)
++.|+|+|.+-.--.. ..+. ...++..++.+.+.++.. .++||++-||| +.+++.+++++||++|.
T Consensus 317 ~~~gaDYI~lGPIFpT----~TK~-~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVA 390 (437)
T PRK12290 317 VQIQPSYIALGHIFPT----TTKQ-MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLA 390 (437)
T ss_pred hhcCCCEEEECCccCC----CCCC-CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 4578999988432211 0010 012334466665444332 27999999999 89999999999999999
Q ss_pred ehHHHHhCCc
Q 013789 295 VGRAAYQNPW 304 (436)
Q Consensus 295 iGRa~l~~P~ 304 (436)
+=|++...++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999987666
No 295
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=94.45 E-value=1.9 Score=43.86 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=66.7
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE-ccCcccccCCCCCCCCC
Q 013789 171 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRT 249 (436)
Q Consensus 171 yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v-hgrt~~~~G~~~~~~~~ 249 (436)
.|+..+.+.+++.++- .++.||.+|..... +.+++...+. .+...|...+++ |-.+..+.+ ..
T Consensus 182 IgAr~~~N~~LL~~va-----~~~kPViLk~G~~~----ti~E~l~A~e-~i~~~GN~~viL~erG~~tf~~------~~ 245 (335)
T PRK08673 182 IGARNMQNFDLLKEVG-----KTNKPVLLKRGMSA----TIEEWLMAAE-YILAEGNPNVILCERGIRTFET------AT 245 (335)
T ss_pred ECcccccCHHHHHHHH-----cCCCcEEEeCCCCC----CHHHHHHHHH-HHHHcCCCeEEEEECCCCCCCC------cC
Confidence 3777788888777654 45899999977642 3445554333 334578765554 522322211 11
Q ss_pred CCCccHHHHHHHHhcCCCcEEEEe----CCCCC--HHHHHHHHHcCCCeeeehH
Q 013789 250 IPPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 250 i~~~~~~~v~~l~~~~~~iPVIan----GgI~s--~~da~~~l~~Gad~VmiGR 297 (436)
...+++..+..+.+.+ ++|||+. +|.++ +.-+.++...||||++|-.
T Consensus 246 ~~~ldl~ai~~lk~~~-~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~ 298 (335)
T PRK08673 246 RNTLDLSAVPVIKKLT-HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEV 298 (335)
T ss_pred hhhhhHHHHHHHHHhc-CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEe
Confidence 2234566777776655 8999885 33322 2455677779999999874
No 296
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=94.45 E-value=0.64 Score=45.54 Aligned_cols=151 Identities=13% Similarity=0.025 Sum_probs=83.8
Q ss_pred hhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCC
Q 013789 116 RFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (436)
Q Consensus 116 ~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i 195 (436)
.+.+.+..+.|+++ +...|. -.|++++++|+|.|=+. .....+. -+|-..+.-..+.+...+++|++....
T Consensus 6 ~~~~~~~~g~~i~m-~tayD~----~sA~i~~~aG~d~ilvG--dSlgm~~--lG~~~t~~vtldem~~h~~aV~rg~~~ 76 (263)
T TIGR00222 6 SLLQKKKQEEKIVA-ITAYDY----SFAKLFADAGVDVILVG--DSLGMVV--LGHDSTLPVTVADMIYHTAAVKRGAPN 76 (263)
T ss_pred HHHHHHhCCCcEEE-EeccCH----HHHHHHHHcCCCEEEEC--ccHhHHh--cCCCCCCCcCHHHHHHHHHHHHhhCCC
Confidence 33444445555542 333332 57888999999988753 2221211 123333445567777778888776333
Q ss_pred cEE-EEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEE---
Q 013789 196 PVS-VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT--- 271 (436)
Q Consensus 196 Pvs-vKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVI--- 271 (436)
|+. +-+..+... +.++..+.+.++++++|+++|.+-|... ..+.+..+.+. .|||+
T Consensus 77 ~~vv~DmPf~sy~--~~e~a~~na~rl~~eaGa~aVkiEgg~~----------------~~~~i~~l~~~--gIpV~gHi 136 (263)
T TIGR00222 77 CLIVTDLPFMSYA--TPEQALKNAARVMQETGANAVKLEGGEW----------------LVETVQMLTER--GVPVVGHL 136 (263)
T ss_pred ceEEeCCCcCCCC--CHHHHHHHHHHHHHHhCCeEEEEcCcHh----------------HHHHHHHHHHC--CCCEEEec
Confidence 322 222222221 2556666667788889999999976321 02344445443 78888
Q ss_pred ------Ee--CCC----CCHHH-------HHHHHHcCCCeeee
Q 013789 272 ------LN--GGI----NTVDE-------VNAALRKGAHHVMV 295 (436)
Q Consensus 272 ------an--GgI----~s~~d-------a~~~l~~Gad~Vmi 295 (436)
++ ||. .+.+. ++++.+.||+++.+
T Consensus 137 GltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivl 179 (263)
T TIGR00222 137 GLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVL 179 (263)
T ss_pred CCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 44 544 23343 33334479999875
No 297
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=94.41 E-value=0.15 Score=57.31 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=54.4
Q ss_pred CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC--CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 225 ~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~--~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
+|+|++.+..--.. .+ .. ..-+++.++.+.++++... ++||++-||| +++++.+++++||++|.+-++++..
T Consensus 127 ~gaDYi~~Gpvf~T---~t-K~-~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 127 ALPDVIGIGPVAST---AT-KP-DAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred CCCCEEEECCcccc---CC-CC-CCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 35999998543211 00 10 1113445777777776652 3999999999 8999999999999999999999987
Q ss_pred Ccc
Q 013789 303 PWY 305 (436)
Q Consensus 303 P~l 305 (436)
++.
T Consensus 201 ~d~ 203 (755)
T PRK09517 201 ANP 203 (755)
T ss_pred CCH
Confidence 774
No 298
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.38 E-value=0.12 Score=54.74 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=47.5
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
+-++|+|.|.|.... |.+. .-++.+..+++.++++||++ |+|.|.+++..+++.|||+|-+|
T Consensus 232 L~~aG~d~I~vd~a~----g~~~--------~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 232 LVKAGVDVIVIDSSH----GHSI--------YVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHhCCCEEEEECCC----CcHh--------HHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 345999999984321 2111 11667888888778999998 99999999999999999999765
No 299
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.30 E-value=0.14 Score=54.50 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=46.6
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
.+.++|+|.|.+..-. |.+. .-.+.+.++++.+++++|| .|+|.+.+.++.+++.|||+|-+|
T Consensus 234 ~Lv~aGvd~i~~D~a~----~~~~--------~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 234 ALLEAGVDVLVVDTAH----GHQE--------KMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHhCCCEEEEeccC----CccH--------HHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEEEEC
Confidence 3345899999885322 2211 1167788888888888766 599999999999999999997744
No 300
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.25 E-value=1.6 Score=44.51 Aligned_cols=133 Identities=10% Similarity=-0.011 Sum_probs=83.4
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEec
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCR 202 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR 202 (436)
-|.-..+...+++.+.+.++...+.||..+-+..|- .+++.-.+.++++|+.+| +.+.+-.-
T Consensus 131 v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~air~~~g~~~~l~vDaN 194 (355)
T cd03321 131 VQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY----------------PTADEDLAVVRSIRQAVGDGVGLMVDYN 194 (355)
T ss_pred eeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC----------------CChHhHHHHHHHHHHhhCCCCEEEEeCC
Confidence 345544555567777666665666799887664331 234445677888888775 33433322
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da 282 (436)
-+|+ .++..++ .+.+++.++++|- . .+++.+++...++.+.. ++||.+.-.+.+..++
T Consensus 195 ~~~~----~~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~ 252 (355)
T cd03321 195 QSLT----VPEAIER-GQALDQEGLTWIE----E------------PTLQHDYEGHARIASAL-RTPVQMGENWLGPEEM 252 (355)
T ss_pred CCcC----HHHHHHH-HHHHHcCCCCEEE----C------------CCCCcCHHHHHHHHHhc-CCCEEEcCCCcCHHHH
Confidence 2332 3344443 4455778887776 1 11222366667777664 8999988889999999
Q ss_pred HHHHH-cCCCeeee
Q 013789 283 NAALR-KGAHHVMV 295 (436)
Q Consensus 283 ~~~l~-~Gad~Vmi 295 (436)
.++++ ..+|.|++
T Consensus 253 ~~~i~~~~~d~i~~ 266 (355)
T cd03321 253 FKALSAGACDLVMP 266 (355)
T ss_pred HHHHHhCCCCeEec
Confidence 99998 45777764
No 301
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=94.22 E-value=0.93 Score=42.68 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=72.7
Q ss_pred HHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccC-CCCCCcHHHHHHHHHHHh
Q 013789 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-VDDHDSYNQLCDFIYKVS 222 (436)
Q Consensus 144 ~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G-~~~~~~~~~~~~~la~~~ 222 (436)
+.+.++|+|.|.+|.-+. .+.+.++++.+++ .|.++.+-+-+. +.....+.+..+.+.++.
T Consensus 74 ~~~~~~gad~vtvh~e~g-----------------~~~l~~~i~~~~~-~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~ 135 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTG-----------------RDSLKAVVEAAAE-SGGKVFVVVEMSHPGALEFIQPHADKLAKLA 135 (215)
T ss_pred HHHHhCCCCEEEEcCcCC-----------------HHHHHHHHHHHHh-cCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 556678999998886322 1235566666654 366654433332 222233334455566677
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCH-HHHHHHHHcCCCeeeehHHHH
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~-~da~~~l~~Gad~VmiGRa~l 300 (436)
.+.|.+...+.. + ..+.+.++.+... ++.+ ..|||... ..+..+++.|||.+.+||+++
T Consensus 136 ~e~G~~g~~~~~-~-----------------~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~ 196 (215)
T PRK13813 136 QEAGAFGVVAPA-T-----------------RPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIY 196 (215)
T ss_pred HHhCCCeEEECC-C-----------------cchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccC
Confidence 778887665321 0 0222333333222 2333 77999764 247788889999999999987
Q ss_pred hCCc
Q 013789 301 QNPW 304 (436)
Q Consensus 301 ~~P~ 304 (436)
..++
T Consensus 197 ~~~d 200 (215)
T PRK13813 197 NAAD 200 (215)
T ss_pred CCCC
Confidence 6665
No 302
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.21 E-value=0.43 Score=45.10 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=96.5
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCcc--------ccCCCccccccCChHHHHHHHHHHhh---
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV--------AGHGCFGVSLMLDPKFVGEAMSVIAA--- 191 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v--------~r~g~yG~~Ll~~~~~l~eiv~av~~--- 191 (436)
...|++.=|-+.++++-...++-+.+.|++.|||.+-.|...- ..+--.|+.-.-+++.+.+.+.+=.+
T Consensus 11 ~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 11 KAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred HHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEE
Confidence 3578898899999999999999999999999999877664200 00012355555566666665544111
Q ss_pred -------------ccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHH
Q 013789 192 -------------NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (436)
Q Consensus 192 -------------~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v 258 (436)
..++|+ -.|. .+.+|+.. . .+.|++.+-+..-... | . -.++
T Consensus 91 sP~~~~ev~~~a~~~~ip~----~PG~---~TptEi~~----A-le~G~~~lK~FPa~~~--G----------g--~~~~ 144 (211)
T COG0800 91 SPGLNPEVAKAANRYGIPY----IPGV---ATPTEIMA----A-LELGASALKFFPAEVV--G----------G--PAML 144 (211)
T ss_pred CCCCCHHHHHHHHhCCCcc----cCCC---CCHHHHHH----H-HHcChhheeecCcccc--C----------c--HHHH
Confidence 012222 1222 23444332 2 2488888887654321 1 1 2344
Q ss_pred HHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHh
Q 013789 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 259 ~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~ 301 (436)
..+.--+++++++-.||| +.+.+.+.+..|+..|.+|..+..
T Consensus 145 ka~~gP~~~v~~~pTGGV-s~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 145 KALAGPFPQVRFCPTGGV-SLDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred HHHcCCCCCCeEeecCCC-CHHHHHHHHhCCceEEecCccccC
Confidence 444444568999999999 667999999999888888886543
No 303
>PRK14057 epimerase; Provisional
Probab=94.09 E-value=2.6 Score=41.18 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=87.0
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCc-------
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP------- 196 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iP------- 196 (436)
..|+=+.|...+|+.+. +.+.++|+|.|-+|.=.. .+ +.++++.+++. |.+
T Consensus 75 ~~p~DvHLMV~~P~~~i---~~~~~aGad~It~H~Ea~---------------~~---~~~~l~~Ir~~-G~k~~~~~~~ 132 (254)
T PRK14057 75 TFIKDVHLMVADQWTAA---QACVKAGAHCITLQAEGD---------------IH---LHHTLSWLGQQ-TVPVIGGEMP 132 (254)
T ss_pred CCCeeEEeeeCCHHHHH---HHHHHhCCCEEEEeeccc---------------cC---HHHHHHHHHHc-CCCccccccc
Confidence 57888999999999765 556678999999986421 11 34556666554 321
Q ss_pred --EEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH---HhcC-CCcEE
Q 013789 197 --VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDF-PDLTF 270 (436)
Q Consensus 197 --vsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l---~~~~-~~iPV 270 (436)
..+-+.++ ...+.+.. ++. -+|.|.+..-+. |.++.. .++. .++-+.++ .++. .++.|
T Consensus 133 ~kaGlAlnP~----Tp~e~i~~----~l~--~vD~VLvMtV~P---GfgGQ~--Fi~~-~l~KI~~lr~~~~~~~~~~~I 196 (254)
T PRK14057 133 VIRGISLCPA----TPLDVIIP----ILS--DVEVIQLLAVNP---GYGSKM--RSSD-LHERVAQLLCLLGDKREGKII 196 (254)
T ss_pred ceeEEEECCC----CCHHHHHH----HHH--hCCEEEEEEECC---CCCchh--ccHH-HHHHHHHHHHHHHhcCCCceE
Confidence 23333332 22333332 333 278888876665 333211 1111 13333333 3222 25778
Q ss_pred EEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 271 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 271 IanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
-+-||| +.+.+.++.+.|||.+.+|++++.+++
T Consensus 197 eVDGGI-~~~ti~~l~~aGad~~V~GSalF~~~d 229 (254)
T PRK14057 197 VIDGSL-TQDQLPSLIAQGIDRVVSGSALFRDDR 229 (254)
T ss_pred EEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 899999 668999999999999999999876555
No 304
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=93.81 E-value=1 Score=44.15 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=66.6
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE-ccCcccccCCCCCCCCCC
Q 013789 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRTI 250 (436)
Q Consensus 172 G~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v-hgrt~~~~G~~~~~~~~i 250 (436)
|+..+.+.+++..+- ..+.||.+|.-.. .+.+++...+..+ ...|.+-|++ |..+..|.+. ..
T Consensus 115 ~s~~~~n~~LL~~~a-----~~gkPVilk~G~~----~t~~e~~~Ave~i-~~~Gn~~i~l~~rG~s~y~~~------~~ 178 (260)
T TIGR01361 115 GARNMQNFELLKEVG-----KQGKPVLLKRGMG----NTIEEWLYAAEYI-LSSGNGNVILCERGIRTFEKA------TR 178 (260)
T ss_pred CcccccCHHHHHHHh-----cCCCcEEEeCCCC----CCHHHHHHHHHHH-HHcCCCcEEEEECCCCCCCCC------Cc
Confidence 777778877655542 3589999997654 2345555544444 4578865555 5323322111 11
Q ss_pred CCccHHHHHHHHhcCCCcEEEE----eCCCCC--HHHHHHHHHcCCCeeeehH
Q 013789 251 PPLKYEYYYALLRDFPDLTFTL----NGGINT--VDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 251 ~~~~~~~v~~l~~~~~~iPVIa----nGgI~s--~~da~~~l~~Gad~VmiGR 297 (436)
..+++..+..+.+.+ ++||+. .+|..+ ..-+.++...||+|++|=+
T Consensus 179 ~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~ 230 (260)
T TIGR01361 179 NTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEV 230 (260)
T ss_pred CCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEe
Confidence 224577787877765 899999 333222 4555567779999998764
No 305
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.80 E-value=7.6 Score=38.39 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=106.2
Q ss_pred EEcCCC---CCChHHHHHHHH---Hc-CCCcEEEeccccchhhhhccc---chhhhhccCCCCCcEEEEEcCCCHHHHHH
Q 013789 72 SVAPMM---DWTDNHYRTLAR---LI-SKHAWLYTEMLAAETIIYQQG---NLDRFLAFSPEQHPIVLQIGGSNLDNLAK 141 (436)
Q Consensus 72 ilAPMa---gvtd~~fr~~~~---~~-Gg~gl~~temv~~~~l~~~~~---~~~~~~~~~~~~~pi~vQL~g~~p~~~~~ 141 (436)
++.|+. .+....++.+++ .. |-.|+++.+...--......+ -++...+......|+++++.+.+.++..+
T Consensus 8 ~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~ 87 (288)
T cd00954 8 LLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQE 87 (288)
T ss_pred eECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHH
Confidence 444553 355566766653 33 544555544322111111111 11222233345569999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEecc---CCCCCCcHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI---GVDDHDSYNQLCDF 217 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~---G~~~~~~~~~~~~~ 217 (436)
.|+.++++|+|++-+- .|... . ...+-+.+-.+.|.+++ ++||.+=--. |.+- +.+.
T Consensus 88 ~a~~a~~~Gad~v~~~--~P~y~-------~----~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l--~~~~---- 148 (288)
T cd00954 88 LAKHAEELGYDAISAI--TPFYY-------K----FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNL--TLEQ---- 148 (288)
T ss_pred HHHHHHHcCCCEEEEe--CCCCC-------C----CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCC--CHHH----
Confidence 9999999999998764 23311 0 23456788888888888 8998874322 3221 2222
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
+.++++.-.+-+|--.. | +...+.++.+... ++.| .+|. + ..+...+..|++|.+.|
T Consensus 149 ~~~L~~~pnivgiK~s~------~------------d~~~~~~~~~~~~~~~~v-~~G~--d-~~~~~~~~~G~~G~i~~ 206 (288)
T cd00954 149 FLELFEIPNVIGVKFTA------T------------DLYDLERIRAASPEDKLV-LNGF--D-EMLLSALALGADGAIGS 206 (288)
T ss_pred HHHHhcCCCEEEEEeCC------C------------CHHHHHHHHHhCCCCcEE-EEec--h-HHHHHHHHcCCCEEEeC
Confidence 23343311222222111 0 1333445554443 4434 4443 1 23445667899999988
Q ss_pred HHHHhCCcchhhhhh
Q 013789 297 RAAYQNPWYTLGHVD 311 (436)
Q Consensus 297 Ra~l~~P~lf~~~~~ 311 (436)
.+-+ .|..+.+..+
T Consensus 207 ~~n~-~P~~~~~l~~ 220 (288)
T cd00954 207 TYNV-NGKRYRKIFE 220 (288)
T ss_pred hhhh-CHHHHHHHHH
Confidence 6643 4666544333
No 306
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.77 E-value=0.23 Score=51.55 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=45.9
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
-++|+|.|++.... |.+. .-.+.+..+.+.+++++ +..|+|.|.++++.+++.|||+|.+|
T Consensus 162 v~aGvDvI~iD~a~----g~~~--------~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 162 VKAHVDILVIDSAH----GHST--------RIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HhcCCCEEEEECCC----CCCh--------hHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 35999999985322 2111 11567778877777776 55789999999999999999999887
No 307
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.75 E-value=0.97 Score=44.64 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=56.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
-.|++++++||+++-+..+.=...--..|. |- -..+.+.+.++.+...+++||.|=+-.|+-+ ...+.+.+.
T Consensus 29 ~sA~la~~aGF~al~~sg~~vA~slG~pD~-~~---~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~---~~nvartV~- 100 (289)
T COG2513 29 GSALLAERAGFKALYLSGAGVAASLGLPDL-GI---TTLDEVLADARRITDAVDLPVLVDIDTGFGE---ALNVARTVR- 100 (289)
T ss_pred HHHHHHHHcCCeEEEeccHHHHHhcCCCcc-cc---ccHHHHHHHHHHHHhhcCCceEEeccCCCCc---HHHHHHHHH-
Confidence 478889999999998863211100000111 21 2256677777788888999999999999865 334455444
Q ss_pred HhhcCCccEEEEc
Q 013789 221 VSSLSPTRHFIIH 233 (436)
Q Consensus 221 ~~e~~Gvd~I~vh 233 (436)
.++++|+.++++-
T Consensus 101 ~~~~aG~agi~iE 113 (289)
T COG2513 101 ELEQAGAAGIHIE 113 (289)
T ss_pred HHHHcCcceeeee
Confidence 4567999999984
No 308
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.70 E-value=0.35 Score=47.81 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=47.1
Q ss_pred cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 224 ~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
++|+|+|-+-. ...+.+.++++.. +++||.+.||| +.+.+.++.++|+|++.+|.-...-
T Consensus 207 ~~gaD~I~LD~------------------~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 207 AAGADIVMLDE------------------LSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred HcCCCEEEECC------------------CCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 58999996520 0134444444432 47999999999 7999999999999999999977666
Q ss_pred Ccc
Q 013789 303 PWY 305 (436)
Q Consensus 303 P~l 305 (436)
||+
T Consensus 268 ~~~ 270 (277)
T PRK05742 268 KAV 270 (277)
T ss_pred ccc
Confidence 665
No 309
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.67 E-value=0.43 Score=48.25 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=45.5
Q ss_pred HHHhhc-CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 219 YKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 219 a~~~e~-~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
..+++. .|+|.|++--- +|.+.. -.+.+..+.+.+++ +.|..|.|.++++++++++.|||+|-+|
T Consensus 113 ~~L~~a~~~~d~iviD~A----hGhs~~--------~i~~ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 113 TSILEAVPQLKFICLDVA----NGYSEH--------FVEFVKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHhcCCCCCEEEEECC----CCcHHH--------HHHHHHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 334443 36999998421 132211 15567777777755 5677899999999999999999999877
No 310
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=93.63 E-value=7.7 Score=37.94 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=92.5
Q ss_pred CCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEE
Q 013789 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (436)
Q Consensus 121 ~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvK 200 (436)
.....|+++++.+.+.++..+.++.+++.|+|+|-+.. |... . ...+-+.+-.++|.+.+++|+.+-
T Consensus 63 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~-------~----~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 63 VAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP--PYYN-------K----PSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred hCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC--CcCC-------C----CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567999999999999999999999999999998842 3311 1 234668888888888889999876
Q ss_pred eccCCCCC-CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCC
Q 013789 201 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 278 (436)
Q Consensus 201 iR~G~~~~-~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s 278 (436)
--.+.... -+.+. +.++++.-.+.+|--.. .+...+.++.+... ++ .+.+|.
T Consensus 130 n~P~~tg~~l~~~~----~~~L~~~~~v~giK~s~------------------~d~~~~~~~~~~~~~~~-~v~~G~--- 183 (281)
T cd00408 130 NIPGRTGVDLSPET----IARLAEHPNIVGIKDSS------------------GDLDRLTRLIALLGPDF-AVLSGD--- 183 (281)
T ss_pred ECccccCCCCCHHH----HHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHhcCCCe-EEEEcc---
Confidence 55432211 12322 23343322233332211 01444445554432 33 445565
Q ss_pred HHHHHHHHHcCCCeeeehHHHHhCCcchhhhhh
Q 013789 279 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (436)
Q Consensus 279 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~ 311 (436)
-..+...+..|++|.+.|.+.+ .|.++.+..+
T Consensus 184 d~~~~~~l~~G~~G~i~~~~n~-~p~~~~~~~~ 215 (281)
T cd00408 184 DDLLLPALALGADGAISGAANV-APKLAVALYE 215 (281)
T ss_pred hHHHHHHHHcCCCEEEehHHhh-CHHHHHHHHH
Confidence 3455666778999999988653 4666544433
No 311
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.53 E-value=2.5 Score=41.85 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHH
Q 013789 181 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (436)
Q Consensus 181 ~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~ 260 (436)
.+.++.+ .++..+.|+.+-+... +.++..+. ++.++++|+|+|.+|-......+.+ .....-+..-.+.+..
T Consensus 77 ~~~~~~~-~~~~~~~p~ivsi~g~-----~~~~~~~~-a~~~~~~G~d~iElN~~cP~~~~~g-~~~~~~~~~~~eiv~~ 148 (296)
T cd04740 77 FLEELLP-WLREFGTPVIASIAGS-----TVEEFVEV-AEKLADAGADAIELNISCPNVKGGG-MAFGTDPEAVAEIVKA 148 (296)
T ss_pred HHHHHHH-HhhcCCCcEEEEEecC-----CHHHHHHH-HHHHHHcCCCEEEEECCCCCCCCCc-ccccCCHHHHHHHHHH
Confidence 3344433 3444578888877632 23344443 4556778999999984432211111 1100101111344555
Q ss_pred HHhcCCCcEEEE--eCCCCCHHHHHHHH-HcCCCeeee
Q 013789 261 LLRDFPDLTFTL--NGGINTVDEVNAAL-RKGAHHVMV 295 (436)
Q Consensus 261 l~~~~~~iPVIa--nGgI~s~~da~~~l-~~Gad~Vmi 295 (436)
+++.. ++||+. +.++.+..++.+.+ +.|||++.+
T Consensus 149 vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 149 VKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 55443 788873 55665666655544 499999865
No 312
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=93.51 E-value=0.83 Score=44.53 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=70.3
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCC
Q 013789 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251 (436)
Q Consensus 172 G~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~ 251 (436)
|+..|++.+++.++ .+.++||-.|..++ .+++|+... +..+-..|...|++.=| |.-..+...-.
T Consensus 135 GARNMQNF~LLke~-----G~~~kPvLLKRg~~----aTieEwL~A-AEYI~s~GN~~vILCER-----GIRtfe~~TRn 199 (286)
T COG2876 135 GARNMQNFALLKEV-----GRQNKPVLLKRGLS----ATIEEWLNA-AEYILSHGNGNVILCER-----GIRTFEKATRN 199 (286)
T ss_pred cccchhhhHHHHHh-----cccCCCeEEecCcc----ccHHHHHHH-HHHHHhCCCCcEEEEec-----ccccccccccc
Confidence 66777887777654 34589999997765 345555443 33344578888887643 22122223334
Q ss_pred CccHHHHHHHHhcCCCcEEEEeC----CCCCH--HHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 252 PLKYEYYYALLRDFPDLTFTLNG----GINTV--DEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 252 ~~~~~~v~~l~~~~~~iPVIanG----gI~s~--~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+++...+..+++. .++|||++= |=.+. --+.+++..||||+|+= ...||.-
T Consensus 200 tLDi~aV~~~kq~-THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE--VHp~P~~ 256 (286)
T COG2876 200 TLDISAVPILKQE-THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE--VHPDPEK 256 (286)
T ss_pred eechHHHHHHHhh-cCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE--ecCCccc
Confidence 5667777666665 499999862 22222 22345556899999974 2445553
No 313
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=93.42 E-value=4.8 Score=39.98 Aligned_cols=145 Identities=11% Similarity=0.019 Sum_probs=77.2
Q ss_pred HHHHHHHHC---------CCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcH
Q 013789 141 KATELANAY---------NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 211 (436)
Q Consensus 141 ~aA~~~~~~---------G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~ 211 (436)
-.|++++++ ||++|-+...+=+...-..| + .++ ..+.+.+.++.|...+++||++-...| . +.
T Consensus 20 ~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD--~-~~~-~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g---~~ 91 (285)
T TIGR02320 20 LSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPD--I-EEA-SWTQRLDVVEFMFDVTTKPIILDGDTG-G---NF 91 (285)
T ss_pred HHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCC--c-CcC-CHHHHHHHHHHHHhhcCCCEEEecCCC-C---CH
Confidence 467888888 99998875332211000011 1 122 334455567777788899999988888 3 33
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCc-----ccccCCCCCCCCCCCCc-cHHHHHHHHhc--CCCcEEEEeCCCC----CH
Q 013789 212 NQLCDFIYKVSSLSPTRHFIIHSRK-----ALLNGISPAENRTIPPL-KYEYYYALLRD--FPDLTFTLNGGIN----TV 279 (436)
Q Consensus 212 ~~~~~~la~~~e~~Gvd~I~vhgrt-----~~~~G~~~~~~~~i~~~-~~~~v~~l~~~--~~~iPVIanGgI~----s~ 279 (436)
.++.+.+.+ ++++|+.+|.+--.. ...++... ...++.. ..+.+...++. -++++||+--|.. ..
T Consensus 92 ~~v~r~V~~-l~~aGvaGi~iEDq~~pk~cg~~~~~~~--~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 92 EHFRRLVRK-LERRGVSAVCIEDKLGLKKNSLFGNDVA--QPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred HHHHHHHHH-HHHcCCeEEEEeccCCCccccccCCCCc--ccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 444444443 456999999993221 11111100 0112221 12223333322 2368888874432 23
Q ss_pred HHHH----HHHHcCCCeeeeh
Q 013789 280 DEVN----AALRKGAHHVMVG 296 (436)
Q Consensus 280 ~da~----~~l~~Gad~VmiG 296 (436)
+++. ++.+.|||+|++=
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEec
Confidence 3333 3334899999984
No 314
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=93.41 E-value=2.3 Score=41.61 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=80.9
Q ss_pred EEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCc-EEEEeccCCC
Q 013789 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVD 206 (436)
Q Consensus 128 ~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iP-vsvKiR~G~~ 206 (436)
++.|.+.|. -.|++++++|.|.|=+.= ....+. -+|.+.+.-..+.+..-.++|++....+ +.+=+..|..
T Consensus 18 i~~lTaYD~----~~A~~~d~agvD~iLVGD--Slgmv~--~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy 89 (261)
T PF02548_consen 18 IVMLTAYDY----PSARIADEAGVDIILVGD--SLGMVV--LGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSY 89 (261)
T ss_dssp EEEEE--SH----HHHHHHHHTT-SEEEE-T--THHHHT--T--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSS
T ss_pred EEEEecccH----HHHHHHHHcCCCEEEeCC--cHHHhe--eCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccc
Confidence 556766665 578889999999886642 221221 1234445567777888888888865444 5555666654
Q ss_pred CCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe-----------CC
Q 013789 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-----------GG 275 (436)
Q Consensus 207 ~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan-----------Gg 275 (436)
. .+.++..+...++++++|+|+|-+-|... ..+.+..+++. .|||++- ||
T Consensus 90 ~-~s~e~av~nA~rl~ke~GadaVKlEGg~~----------------~~~~i~~l~~~--GIPV~gHiGLtPQ~~~~~GG 150 (261)
T PF02548_consen 90 Q-ASPEQAVRNAGRLMKEAGADAVKLEGGAE----------------IAETIKALVDA--GIPVMGHIGLTPQSVHQLGG 150 (261)
T ss_dssp T-SSHHHHHHHHHHHHHTTT-SEEEEEBSGG----------------GHHHHHHHHHT--T--EEEEEES-GGGHHHHTS
T ss_pred c-CCHHHHHHHHHHHHHhcCCCEEEeccchh----------------HHHHHHHHHHC--CCcEEEEecCchhheeccCC
Confidence 3 34555566667788889999999987431 15667777775 8999985 33
Q ss_pred CC----CHHHHHHHHH-------cCCCeeee
Q 013789 276 IN----TVDEVNAALR-------KGAHHVMV 295 (436)
Q Consensus 276 I~----s~~da~~~l~-------~Gad~Vmi 295 (436)
-. |.+++.++++ .||-++.+
T Consensus 151 yr~qGk~~~~a~~l~~~A~ale~AGaf~ivl 181 (261)
T PF02548_consen 151 YRVQGKTAEEAEKLLEDAKALEEAGAFAIVL 181 (261)
T ss_dssp S--CSTSHHHHHHHHHHHHHHHHHT-SEEEE
T ss_pred ceEEecCHHHHHHHHHHHHHHHHcCccEEee
Confidence 32 5566655543 68877764
No 315
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.33 E-value=2.9 Score=42.64 Aligned_cols=143 Identities=10% Similarity=0.057 Sum_probs=87.9
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCC--cEEEEe
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKC 201 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i--PvsvKi 201 (436)
..|+..-+...+++.+.+.++...+.||..+.+..|-+.... +. + .+++.-.+.++++++.++- .+.+=.
T Consensus 112 ~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~---~~-~----~~~~~D~~~i~avr~~~g~~~~l~vDa 183 (352)
T cd03325 112 RVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWI---DT-S----KKVDAAVERVAALREAVGPDIDIGVDF 183 (352)
T ss_pred eeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccC---CC-H----HHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 345555455668888776666666789999999876432111 11 1 2355667888888887753 333322
Q ss_pred ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHH
Q 013789 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (436)
Q Consensus 202 R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~d 281 (436)
.-+|+ ..+..++ .+.+++.|+++|- + .+++.+++...++.+.. .+||.+.=.+.+.++
T Consensus 184 N~~~~----~~~A~~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~L~~~~-~~pia~dEs~~~~~~ 241 (352)
T cd03325 184 HGRVS----KPMAKDL-AKELEPYRLLFIE----E------------PVLPENVEALAEIAART-TIPIATGERLFSRWD 241 (352)
T ss_pred CCCCC----HHHHHHH-HHhccccCCcEEE----C------------CCCccCHHHHHHHHHhC-CCCEEecccccCHHH
Confidence 22343 3333443 3455667777665 1 12222366677777764 899887667889999
Q ss_pred HHHHHHc-CCCeeeeh
Q 013789 282 VNAALRK-GAHHVMVG 296 (436)
Q Consensus 282 a~~~l~~-Gad~VmiG 296 (436)
+..+++. .+|.|++-
T Consensus 242 ~~~~~~~~~~d~v~~d 257 (352)
T cd03325 242 FKELLEDGAVDIIQPD 257 (352)
T ss_pred HHHHHHhCCCCEEecC
Confidence 9999984 57777743
No 316
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=93.32 E-value=0.35 Score=51.83 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=52.5
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCC---eeeehHHH
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH---HVMVGRAA 299 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad---~VmiGRa~ 299 (436)
.+.|+|+|.+..--. -.+ .. ..++..++.+..+++.. ++||++-||| +++.+.+++++|++ +|.+++++
T Consensus 407 ~~~gadyi~~gpif~---t~t-k~--~~~~~g~~~~~~~~~~~-~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i 478 (502)
T PLN02898 407 WKDGADYIGCGGVFP---TNT-KA--NNKTIGLDGLREVCEAS-KLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSAL 478 (502)
T ss_pred hhcCCCEEEECCeec---CCC-CC--CCCCCCHHHHHHHHHcC-CCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHH
Confidence 357899988642211 001 11 11344577777776654 8999999999 59999999999888 99999999
Q ss_pred HhCCc
Q 013789 300 YQNPW 304 (436)
Q Consensus 300 l~~P~ 304 (436)
+..++
T Consensus 479 ~~~~d 483 (502)
T PLN02898 479 FDQED 483 (502)
T ss_pred hcCCC
Confidence 86544
No 317
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=93.24 E-value=9.7 Score=37.92 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=56.0
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCC-ccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCeeeeh
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVG 296 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~-~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~VmiG 296 (436)
.+..++.|+|++.+.=.|.. |.-.. -+. ++++.+.++.+.. ++|++.-||=..+ ++++++.+.|+.=|=|+
T Consensus 164 ~~Fv~~TgvD~LAvaiGt~H--G~y~~----~p~~Ld~~~L~~I~~~v-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 236 (288)
T TIGR00167 164 KEFVKLTGVDSLAAAIGNVH--GVYKG----EPKGLDFERLEEIQKYV-NLPLVLHGGSGIPDEEIKKAISLGVVKVNID 236 (288)
T ss_pred HHHHhccCCcEEeeccCccc--cccCC----CCCccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcC
Confidence 34456799999988544431 21100 123 6799998887765 9999999988777 67888999999999999
Q ss_pred HHHHhC
Q 013789 297 RAAYQN 302 (436)
Q Consensus 297 Ra~l~~ 302 (436)
+.+...
T Consensus 237 T~l~~a 242 (288)
T TIGR00167 237 TELQIA 242 (288)
T ss_pred hHHHHH
Confidence 987543
No 318
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=93.24 E-value=4.1 Score=39.15 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=85.2
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~g-cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi 201 (436)
++.|+=+-|...+|+.+. +.+.++|+|.|-+|.= |. .-+.++++.+++. |....+-+
T Consensus 58 t~~~~DvHLMv~~P~~~i---~~~~~aGad~it~H~Ea~~------------------~~~~~~i~~Ik~~-G~kaGlal 115 (229)
T PRK09722 58 ASKPLDVHLMVTDPQDYI---DQLADAGADFITLHPETIN------------------GQAFRLIDEIRRA-GMKVGLVL 115 (229)
T ss_pred CCCCeEEEEEecCHHHHH---HHHHHcCCCEEEECccCCc------------------chHHHHHHHHHHc-CCCEEEEe
Confidence 567899999999999765 5566779999999853 21 0134555666554 44444444
Q ss_pred ccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHH---hcC-CCcEEEEeCCCC
Q 013789 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RDF-PDLTFTLNGGIN 277 (436)
Q Consensus 202 R~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~---~~~-~~iPVIanGgI~ 277 (436)
.++ ...+.+.+ ++. -+|.|.+..-+. |.++.. .++ ..++-+.++. ++. .++.|-.-|||.
T Consensus 116 nP~----T~~~~l~~----~l~--~vD~VLvMsV~P---Gf~GQ~--fi~-~~l~KI~~lr~~~~~~~~~~~IeVDGGI~ 179 (229)
T PRK09722 116 NPE----TPVESIKY----YIH--LLDKITVMTVDP---GFAGQP--FIP-EMLDKIAELKALRERNGLEYLIEVDGSCN 179 (229)
T ss_pred CCC----CCHHHHHH----HHH--hcCEEEEEEEcC---CCcchh--ccH-HHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 443 22333333 232 268888876665 433221 111 1133344433 222 256788999995
Q ss_pred CHHHHHHHHHcCCCeeeehHHH
Q 013789 278 TVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 278 s~~da~~~l~~Gad~VmiGRa~ 299 (436)
.+.+.++.+.|||.+.+|+.+
T Consensus 180 -~~~i~~~~~aGad~~V~Gss~ 200 (229)
T PRK09722 180 -QKTYEKLMEAGADVFIVGTSG 200 (229)
T ss_pred -HHHHHHHHHcCCCEEEEChHH
Confidence 788999999999999999763
No 319
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.23 E-value=0.21 Score=53.49 Aligned_cols=61 Identities=18% Similarity=0.337 Sum_probs=45.8
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
-++|+|.|.+..- +|.+. .-|+.+..+++.+++++| ..|+|.+.++++.+++.|||+|.+|
T Consensus 257 ~~ag~d~i~iD~~----~g~~~--------~~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 257 VKAGVDVVVLDSS----QGDSI--------YQLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHcCCCEEEEeCC----CCCcH--------HHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4599999998542 13221 116888888887766654 4689999999999999999999765
No 320
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=93.08 E-value=0.14 Score=48.81 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcch
Q 013789 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 306 (436)
Q Consensus 255 ~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 306 (436)
-+.+.++.+ ..|+|.-|||+|++.+.++.+.|||.+..|..+..+|.-+
T Consensus 182 ~e~v~~v~~---~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~ 230 (240)
T COG1646 182 VEMVSRVLS---DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKA 230 (240)
T ss_pred HHHHHHhhc---cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHH
Confidence 444544433 3499999999999999999999999999999999999654
No 321
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.08 E-value=2.7 Score=38.20 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc---CCcEEEEeccCCCCCCcH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---NVPVSVKCRIGVDDHDSY 211 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~---~iPvsvKiR~G~~~~~~~ 211 (436)
+.+.+.+.++.+.+.|+++|.++. ++++.+++.. .+|+.+++..+... ...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~-~~~ 64 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------------------------GYVRLAADALAGSDVPVIVVVGFPTGL-TTT 64 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------------------------HHHHHHHHHhCCCCCeEEEEecCCCCC-CcH
Confidence 788899999999999999998874 3344443322 47888887664322 123
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEE--eCCCC-CHHHHHHHH-
Q 013789 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL--NGGIN-TVDEVNAAL- 286 (436)
Q Consensus 212 ~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIa--nGgI~-s~~da~~~l- 286 (436)
++..+. ++.+.+.|+|++.++.=.. ...+. + ...-.+++.++++.. .++||+. +-+-. +.+.+.++.
T Consensus 65 ~~~~~~-a~~a~~~Gad~i~v~~~~~--~~~~~-~----~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~ 136 (201)
T cd00945 65 EVKVAE-VEEAIDLGADEIDVVINIG--SLKEG-D----WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAAR 136 (201)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeccHH--HHhCC-C----HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHH
Confidence 344443 4455679999999863211 01100 0 001145566666653 3788764 22233 666666542
Q ss_pred ---HcCCCeeeehHH
Q 013789 287 ---RKGAHHVMVGRA 298 (436)
Q Consensus 287 ---~~Gad~VmiGRa 298 (436)
+.|+++|-...+
T Consensus 137 ~~~~~g~~~iK~~~~ 151 (201)
T cd00945 137 IAAEAGADFIKTSTG 151 (201)
T ss_pred HHHHhCCCEEEeCCC
Confidence 379999876654
No 322
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=93.06 E-value=0.48 Score=44.33 Aligned_cols=179 Identities=15% Similarity=0.233 Sum_probs=91.9
Q ss_pred CCCChHHHHHHHHHcCCCcEEEeccc--cchhhhhcccchhhhhccCCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEE
Q 013789 77 MDWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEI 154 (436)
Q Consensus 77 agvtd~~fr~~~~~~Gg~gl~~temv--~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~I 154 (436)
+|.|+..=..++..+| ++.+.--+. ++..+. .....++....+ |..|=+|.+.+. .+..+++.+++.|.|
T Consensus 4 CGi~~~~da~~~~~~g-~d~~Gfi~~~~S~R~v~--~~~a~~l~~~~~---~~~VgVf~~~~~--~~I~~~~~~~~ld~v 75 (197)
T PF00697_consen 4 CGITRPEDARLAAELG-ADYLGFIFYPKSPRYVS--PDQARELVSAVP---PKIVGVFVNQSP--EEILEIVEELGLDVV 75 (197)
T ss_dssp E---SHHHHHHHHHHT-SSEEEEE--TTCTTB----HHHHHHHHCCSS---SSEEEEESSS-H--HHHHHHHHHCTESEE
T ss_pred CCCCcHHHHHHHHHcC-CCEEeeecCCCCCCccC--HHHHHHHHHhcC---CCEEEEEcCCCH--HHHHHHHHHcCCCEE
Confidence 4778888778888886 544332222 111111 112233333222 226667766542 245567788999999
Q ss_pred EecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEcc
Q 013789 155 NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 234 (436)
Q Consensus 155 dLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhg 234 (436)
+||.- ..+ +....++. ++|+...++...+.. ..+. +.....+|++-+.+
T Consensus 76 QLHG~-----------------e~~----e~~~~l~~--~~~vi~~~~v~~~~~-~~~~-------~~~~~~~d~~LlD~ 124 (197)
T PF00697_consen 76 QLHGD-----------------ESP----EYIKLLRA--GLPVIKAIHVDKDID-LLDY-------LERYESVDYFLLDS 124 (197)
T ss_dssp EE-SG-----------------G-H----HHHHHHHT--TSEEEEEEEESSCHS-CCHH-------CHCSTT-SEEEEES
T ss_pred EECCC-----------------CCH----HHHHHhhc--CceEEEEEEeCCccc-hHHH-------HHhcccccEEeEcc
Confidence 99831 111 22222322 578777777654321 1111 11123348888884
Q ss_pred CcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCCcc
Q 013789 235 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 235 rt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~l 305 (436)
+.. |.+. ..+|..+.++.+...+.|+|.+||| +++.+.++++ .+..+|=+.+|.-.+|-.
T Consensus 125 ~~G---gtG~-------~~dw~~~~~~~~~~~~~p~iLAGGl-~p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 125 GSG---GTGK-------TFDWSLLKKIVESYSPKPVILAGGL-NPENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp SST---SSSS----------GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred CCC---cCCc-------ccCHHHhhhhhhhcccCcEEEEcCC-ChHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 332 3221 1124444444443336899999999 7788999998 889999999888777653
No 323
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.98 E-value=4.2 Score=41.28 Aligned_cols=131 Identities=14% Similarity=0.155 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEe-----------cCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc
Q 013789 135 NLDNLAKATELANAYNYDEINL-----------NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdL-----------N~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~ 203 (436)
..+++.+..+.+++.|.+.+-- +.|+|.-++ ||.-+.+..++..+-+ .+.||.++.-.
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI------aS~~~~n~pLL~~~A~-----~gkPvilStGm 142 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKI------PSGEITNAPLLKKIAR-----FGKPVILSTGM 142 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEE------CcccccCHHHHHHHHh-----cCCcEEEECCC
Confidence 3577888888888888765433 456777665 6666788887776644 48999887654
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcc---EEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHH
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTR---HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 280 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd---~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~ 280 (436)
. +.+|+...+. .+.+.|.. .+.+|.-+. +..+. ..+++..+..+.+.+ ++||..++=-....
T Consensus 143 --a---tl~Ei~~Av~-~i~~~G~~~~~i~llhC~s~---YP~~~-----~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~ 207 (329)
T TIGR03569 143 --A---TLEEIEAAVG-VLRDAGTPDSNITLLHCTTE---YPAPF-----EDVNLNAMDTLKEAF-DLPVGYSDHTLGIE 207 (329)
T ss_pred --C---CHHHHHHHHH-HHHHcCCCcCcEEEEEECCC---CCCCc-----ccCCHHHHHHHHHHh-CCCEEECCCCccHH
Confidence 2 4455555433 34567875 666785432 22221 224577777887777 79999875444444
Q ss_pred HHHHHHHcCCC
Q 013789 281 EVNAALRKGAH 291 (436)
Q Consensus 281 da~~~l~~Gad 291 (436)
-...+...||+
T Consensus 208 ~~~aAvalGA~ 218 (329)
T TIGR03569 208 APIAAVALGAT 218 (329)
T ss_pred HHHHHHHcCCC
Confidence 44555568888
No 324
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=92.87 E-value=10 Score=37.20 Aligned_cols=197 Identities=15% Similarity=0.127 Sum_probs=107.3
Q ss_pred EEEcCCC---CCChHHHHHHHH---HcCCCcEEEeccccchhhhhcccc----hhhhhccCCCCCcEEEEEcCCCHHHHH
Q 013789 71 FSVAPMM---DWTDNHYRTLAR---LISKHAWLYTEMLAAETIIYQQGN----LDRFLAFSPEQHPIVLQIGGSNLDNLA 140 (436)
Q Consensus 71 iilAPMa---gvtd~~fr~~~~---~~Gg~gl~~temv~~~~l~~~~~~----~~~~~~~~~~~~pi~vQL~g~~p~~~~ 140 (436)
.+..|+. .+....++.+++ ..|-.|+++.+... +...-..+. ++...+......|+++++.+.+.++..
T Consensus 7 ~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstG-E~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~ 85 (284)
T cd00950 7 ALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTG-ESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAI 85 (284)
T ss_pred eeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCc-chhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHH
Confidence 3555664 355566666653 34534555543322 211111111 112222334567999999999999999
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc---CCCCCCcHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---GVDDHDSYNQLCDF 217 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~---G~~~~~~~~~~~~~ 217 (436)
+.|+.++++|+|+|-+-. |.. . . ...+-+.+..+.|.+..++||.+=--. |.+- +.+.
T Consensus 86 ~~a~~a~~~G~d~v~~~~--P~~--~-----~----~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~l--s~~~---- 146 (284)
T cd00950 86 ELTKRAEKAGADAALVVT--PYY--N-----K----PSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNI--EPET---- 146 (284)
T ss_pred HHHHHHHHcCCCEEEEcc--ccc--C-----C----CCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCC--CHHH----
Confidence 999999999999987752 321 0 1 234567778888877788998865432 3221 2322
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
+.++++.-.+.+|-... + +...+.++.+... ++.| ..|. + ..+...+..|++|++.|
T Consensus 147 ~~~L~~~p~v~giK~s~------~------------~~~~~~~~~~~~~~~~~v-~~G~--d-~~~~~~~~~G~~G~~s~ 204 (284)
T cd00950 147 VLRLAEHPNIVGIKEAT------G------------DLDRVSELIALCPDDFAV-LSGD--D-ALTLPFLALGGVGVISV 204 (284)
T ss_pred HHHHhcCCCEEEEEECC------C------------CHHHHHHHHHhCCCCeEE-EeCC--h-HhHHHHHHCCCCEEEeh
Confidence 23344322233333211 0 1333344444432 4544 4442 2 33455677899999999
Q ss_pred HHHHhCCcchhhhh
Q 013789 297 RAAYQNPWYTLGHV 310 (436)
Q Consensus 297 Ra~l~~P~lf~~~~ 310 (436)
.+-+ .|.++.+.+
T Consensus 205 ~~n~-~p~~~~~~~ 217 (284)
T cd00950 205 AANV-APKLMAEMV 217 (284)
T ss_pred HHHh-hHHHHHHHH
Confidence 8863 455543333
No 325
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=92.86 E-value=0.87 Score=43.02 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=56.4
Q ss_pred CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 195 iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
.++..-+|. .+.++..+ +++.+.+.|++.|.+.-|+. -.++.+.++.++++++ +|+.|
T Consensus 8 ~~liaVlr~-----~~~e~a~~-~~~al~~~Gi~~iEit~~t~---------------~a~~~i~~l~~~~~~~-~vGAG 65 (204)
T TIGR01182 8 AKIVPVIRI-----DDVDDALP-LAKALIEGGLRVLEVTLRTP---------------VALDAIRLLRKEVPDA-LIGAG 65 (204)
T ss_pred CCEEEEEec-----CCHHHHHH-HHHHHHHcCCCEEEEeCCCc---------------cHHHHHHHHHHHCCCC-EEEEE
Confidence 345555664 23334433 34556679999999876543 1267788888877664 79999
Q ss_pred CCCCHHHHHHHHHcCCCeee
Q 013789 275 GINTVDEVNAALRKGAHHVM 294 (436)
Q Consensus 275 gI~s~~da~~~l~~Gad~Vm 294 (436)
-|.|.++++++++.||+.++
T Consensus 66 TVl~~~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 66 TVLNPEQLRQAVDAGAQFIV 85 (204)
T ss_pred eCCCHHHHHHHHHcCCCEEE
Confidence 99999999999999999985
No 326
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.86 E-value=3.4 Score=40.68 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhc-cCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHH
Q 013789 180 KFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 258 (436)
Q Consensus 180 ~~l~eiv~av~~~-~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v 258 (436)
+...+-+...++. .+.|+.+-+... +.+++.+. ++.++++|+|+|.++.......+..... ..+..-.+.+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~-----~~~~~~~~-a~~~~~~G~d~ielN~~cP~~~~~~~~~--~~~~~~~eiv 154 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGS-----SKEDYVEL-ARKIERAGAKALELNLSCPNVGGGRQLG--QDPEAVANLL 154 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccC-----CHHHHHHH-HHHHHHhCCCEEEEEcCCCCCCCCcccc--cCHHHHHHHH
Confidence 3333333333343 578887776542 23344443 4455678999999975433111100000 0011113345
Q ss_pred HHHHhcCCCcEEEE--eCCCC--CHHHHHHHH-HcCCCeeeeh
Q 013789 259 YALLRDFPDLTFTL--NGGIN--TVDEVNAAL-RKGAHHVMVG 296 (436)
Q Consensus 259 ~~l~~~~~~iPVIa--nGgI~--s~~da~~~l-~~Gad~VmiG 296 (436)
.++++.+ ++||+. ++++. +..++.+++ +.|+|++.+-
T Consensus 155 ~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 155 KAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 5555544 788874 34443 233333333 4899999974
No 327
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.85 E-value=1.7 Score=43.21 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=55.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
-.|++++++||+.+-+...+=+...-..|. | ++ ..+.+.+.++.+...+++||++=+..|+-+ ..++.+.+.
T Consensus 24 ~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~-g--~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~---~~~v~~tv~- 95 (285)
T TIGR02317 24 MAALLAERAGFEAIYLSGAAVAASLGLPDL-G--IT-TLDEVAEDARRITRVTDLPLLVDADTGFGE---AFNVARTVR- 95 (285)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHhCCCCCC-C--CC-CHHHHHHHHHHHHhccCCCEEEECCCCCCC---HHHHHHHHH-
Confidence 467889999999998864321110001121 2 22 445566667777778899999999998765 334444443
Q ss_pred HhhcCCccEEEEcc
Q 013789 221 VSSLSPTRHFIIHS 234 (436)
Q Consensus 221 ~~e~~Gvd~I~vhg 234 (436)
.++++|+.+|++--
T Consensus 96 ~~~~aG~agi~IED 109 (285)
T TIGR02317 96 EMEDAGAAAVHIED 109 (285)
T ss_pred HHHHcCCeEEEEec
Confidence 44579999999954
No 328
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.84 E-value=1.8 Score=43.25 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHHHHHHHCCCCEEEecCC-CCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~g-cP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la 219 (436)
-.|++++++||+.|-+... +-....-..|. | +-..+.+.+.++.|...+++||++=+..|+-+ ..++.+.+.
T Consensus 28 ~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~---~~~v~r~V~ 100 (292)
T PRK11320 28 YHALLAERAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGG---AFNIARTVK 100 (292)
T ss_pred HHHHHHHHcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCC---HHHHHHHHH
Confidence 4678899999999977532 11111001121 2 23445567777778888899999999988753 334445443
Q ss_pred HHhhcCCccEEEEcc
Q 013789 220 KVSSLSPTRHFIIHS 234 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhg 234 (436)
.++++|+.+|++--
T Consensus 101 -~~~~aGaagi~IED 114 (292)
T PRK11320 101 -SMIKAGAAAVHIED 114 (292)
T ss_pred -HHHHcCCeEEEEec
Confidence 44679999999953
No 329
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=92.82 E-value=0.27 Score=52.50 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=45.4
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
+.++|+|.|++-.-. |... . -++.+..+.+.++++|||+ |+|.|.+++..+.+.|||+|-+|
T Consensus 236 L~~agvdvivvD~a~----g~~~------~--vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 236 LVEAGVDVLVVDTAH----GHSE------G--VLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHhCCCEEEEECCC----Ccch------h--HHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 345899988773211 1110 0 1556667777777899888 99999999999999999999775
No 330
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.80 E-value=1.3 Score=43.81 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=34.2
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 266 ~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+++.+.++||| +.+.+.++.++|+|.+.+|.-...-|++
T Consensus 230 ~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~~~ 268 (278)
T PRK08385 230 ERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTHSVRNF 268 (278)
T ss_pred CCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCcc
Confidence 47889999999 8999999999999999999977755654
No 331
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=92.79 E-value=4.4 Score=40.35 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=55.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
-.|++++++||++|-+...+=...--..|. | + -..+.+.+.++.|...+++||++=+-.|+-+.. ++.+.+.
T Consensus 26 lSAri~e~aGf~ai~~ss~~va~slG~pD~-g--~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~---~v~~tV~- 97 (290)
T TIGR02321 26 LVAKLAEQAGFGGIWGSGFELSASYAVPDA-N--I-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV---NVHYVVP- 97 (290)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHCCCCCc-c--c-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---HHHHHHH-
Confidence 478889999999988753211100000121 1 1 345566777788888889999999999986532 3444443
Q ss_pred HhhcCCccEEEEcc
Q 013789 221 VSSLSPTRHFIIHS 234 (436)
Q Consensus 221 ~~e~~Gvd~I~vhg 234 (436)
.++++|+.+|++--
T Consensus 98 ~~~~aGvagi~IED 111 (290)
T TIGR02321 98 QYEAAGASAIVMED 111 (290)
T ss_pred HHHHcCCeEEEEeC
Confidence 44679999999953
No 332
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.78 E-value=2.7 Score=41.23 Aligned_cols=126 Identities=14% Similarity=0.101 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc--CCcEEEEeccCCCCCCcHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~--~iPvsvKiR~G~~~~~~~~ 212 (436)
|.+.+.+..+.+.+.|+++|-++.. +|+ +. .-..+.-.++++.+++.+ .+||.+.+.. .+..
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~Gs--------tGE-~~--~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-----~~~~ 79 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGT--------TGE-AP--TLTDEERKEVIEAVVEAVAGRVPVIAGVGA-----NSTR 79 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC--------Ccc-cc--cCCHHHHHHHHHHHHHHhCCCCeEEEecCC-----ccHH
Confidence 6788888889988899999977742 122 22 223344445555555544 4677665433 2233
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEE------EeCCCCCHHHHHHHH
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT------LNGGINTVDEVNAAL 286 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVI------anGgI~s~~da~~~l 286 (436)
+..+. ++.+++.|+|++.+..-.- ...++ ..-++++.++.+. .++||+ ..|--.+++.+.++.
T Consensus 80 ~~i~~-a~~a~~~Gad~v~v~pP~y--~~~~~-------~~~~~~~~~ia~~-~~~pi~iYn~P~~tg~~l~~~~~~~L~ 148 (281)
T cd00408 80 EAIEL-ARHAEEAGADGVLVVPPYY--NKPSQ-------EGIVAHFKAVADA-SDLPVILYNIPGRTGVDLSPETIARLA 148 (281)
T ss_pred HHHHH-HHHHHHcCCCEEEECCCcC--CCCCH-------HHHHHHHHHHHhc-CCCCEEEEECccccCCCCCHHHHHHHh
Confidence 44443 5667889999999964321 11111 0115666777776 488987 457777888888777
Q ss_pred H
Q 013789 287 R 287 (436)
Q Consensus 287 ~ 287 (436)
+
T Consensus 149 ~ 149 (281)
T cd00408 149 E 149 (281)
T ss_pred c
Confidence 5
No 333
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.78 E-value=4.1 Score=38.52 Aligned_cols=129 Identities=15% Similarity=0.052 Sum_probs=77.3
Q ss_pred EEEEEcCC----CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 013789 127 IVLQIGGS----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (436)
Q Consensus 127 i~vQL~g~----~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR 202 (436)
+.+|..-. ++++..+.|+.+.+.|..++.++ . .+.++++++.+++|+-...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~--------------------~----~~~i~~i~~~~~~Pil~~~~ 64 (221)
T PRK01130 9 VSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN--------------------G----VEDIKAIRAVVDVPIIGIIK 64 (221)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC--------------------C----HHHHHHHHHhCCCCEEEEEe
Confidence 44565533 45777888888889998888752 0 35667777777899864444
Q ss_pred cC-----CCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC
Q 013789 203 IG-----VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (436)
Q Consensus 203 ~G-----~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~ 277 (436)
.. +......+++ +.+.++|+|.|.+-.... ..+.. ....+++..+.+. .++|++. ++.
T Consensus 65 ~d~~~~~~~~~~~~~~v-----~~a~~aGad~I~~d~~~~----~~p~~-----~~~~~~i~~~~~~-~~i~vi~--~v~ 127 (221)
T PRK01130 65 RDYPDSEVYITPTLKEV-----DALAAAGADIIALDATLR----PRPDG-----ETLAELVKRIKEY-PGQLLMA--DCS 127 (221)
T ss_pred cCCCCCCceECCCHHHH-----HHHHHcCCCEEEEeCCCC----CCCCC-----CCHHHHHHHHHhC-CCCeEEE--eCC
Confidence 21 1001112222 234569999888754321 00000 0113444444442 4788875 678
Q ss_pred CHHHHHHHHHcCCCeeeeh
Q 013789 278 TVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 278 s~~da~~~l~~Gad~VmiG 296 (436)
+.+++.++.+.|+|.+.++
T Consensus 128 t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 128 TLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred CHHHHHHHHHcCCCEEEcC
Confidence 9999998888999999774
No 334
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=92.78 E-value=1.7 Score=41.76 Aligned_cols=136 Identities=19% Similarity=0.144 Sum_probs=71.2
Q ss_pred HHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhh
Q 013789 144 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS 223 (436)
Q Consensus 144 ~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e 223 (436)
..+.+.|+|.||+- +-..|.-|+ +.|..+.+|++.+.. ..|+|.-+-=-..+..+. ... +.-..
T Consensus 14 ~~a~~~gaDiID~K-------~P~~GaLGA---~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~---~~a-a~~~a 77 (235)
T PF04476_consen 14 EEALAGGADIIDLK-------NPAEGALGA---LFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTA---SLA-ALGAA 77 (235)
T ss_pred HHHHhCCCCEEEcc-------CCCCCCCCC---CCHHHHHHHHHHcCC--CCceEEEecCCCCCchHH---HHH-HHHHH
Confidence 44566799999984 222345454 567777777776533 278887653211111222 111 11123
Q ss_pred cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH---HhcC-CCcEEEEeC--CC-----CCHHHHHHHH-HcCCC
Q 013789 224 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDF-PDLTFTLNG--GI-----NTVDEVNAAL-RKGAH 291 (436)
Q Consensus 224 ~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l---~~~~-~~iPVIanG--gI-----~s~~da~~~l-~~Gad 291 (436)
.+|+|+|-| |+.+..+.. ...+.+..+ ++.+ .+..||+++ |- .++-++.+.. +.|++
T Consensus 78 ~~GvdyvKv--------Gl~g~~~~~---~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~ 146 (235)
T PF04476_consen 78 ATGVDYVKV--------GLFGCKDYD---EAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFD 146 (235)
T ss_pred hcCCCEEEE--------ecCCCCCHH---HHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCC
Confidence 479999988 322111000 002223232 2222 245577665 21 1344555555 48999
Q ss_pred eeeehHHHHhCCcch
Q 013789 292 HVMVGRAAYQNPWYT 306 (436)
Q Consensus 292 ~VmiGRa~l~~P~lf 306 (436)
+||+=|+.=....+|
T Consensus 147 gvMlDTa~Kdg~~L~ 161 (235)
T PF04476_consen 147 GVMLDTADKDGGSLF 161 (235)
T ss_pred EEEEecccCCCCchh
Confidence 999988765555554
No 335
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.76 E-value=4.6 Score=40.11 Aligned_cols=141 Identities=15% Similarity=0.223 Sum_probs=73.7
Q ss_pred HHHHHHHHCCCCEEEecC-------CCCCCccccCCCccccccC-----C--h-HHHHHHHHHHhhccCCcEEEEeccCC
Q 013789 141 KATELANAYNYDEINLNC-------GCPSPKVAGHGCFGVSLML-----D--P-KFVGEAMSVIAANTNVPVSVKCRIGV 205 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~-------gcP~~~v~r~g~yG~~Ll~-----~--~-~~l~eiv~av~~~~~iPvsvKiR~G~ 205 (436)
+.++.+.+.|+.+|.+.- |-|.+...+. ..++.+ + + ..+.++.+. .+..+.|+.+-+.-
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~---~~~~~n~~g~~~~g~~~~~~~~~~~-~~~~~~p~i~si~g-- 100 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAET---PGGMLNAIGLQNPGVDAFIEEELPW-LEEFDTPIIANVAG-- 100 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEec---CCceeecCCCCCcCHHHHHHHHHHH-HhccCCcEEEEecc--
Confidence 344556678898888853 3343333322 122332 2 1 334444443 33457888877653
Q ss_pred CCCCcHHHHHHHHHHHhhcCC-ccEEEEccCccc-cc-CCCCCCCCCCCCccHHHHHHHHhcCCCcEEEE--eCCCCCHH
Q 013789 206 DDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKAL-LN-GISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVD 280 (436)
Q Consensus 206 ~~~~~~~~~~~~la~~~e~~G-vd~I~vhgrt~~-~~-G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIa--nGgI~s~~ 280 (436)
. +.+++.+. ++.++++| +|+|.++.-... .. |..- ..-+..-.+.+..+++.. ++||++ +.++.+..
T Consensus 101 ~---~~~~~~~~-a~~~~~aG~~D~iElN~~cP~~~~gg~~~---~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~ 172 (301)
T PRK07259 101 S---TEEEYAEV-AEKLSKAPNVDAIELNISCPNVKHGGMAF---GTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIV 172 (301)
T ss_pred C---CHHHHHHH-HHHHhccCCcCEEEEECCCCCCCCCcccc---ccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHH
Confidence 1 23445443 45567898 999988432110 01 1110 000111244555555544 889876 44555655
Q ss_pred HHHHHHH-cCCCeeee
Q 013789 281 EVNAALR-KGAHHVMV 295 (436)
Q Consensus 281 da~~~l~-~Gad~Vmi 295 (436)
++.+.++ .|+|++.+
T Consensus 173 ~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 173 EIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 6665554 89999865
No 336
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=92.70 E-value=0.44 Score=46.98 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=29.9
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHH
Q 013789 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 266 ~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l 300 (436)
+++|+++.||| +.+.+.++.++|+|+|++|.-..
T Consensus 229 ~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~~ 262 (272)
T cd01573 229 PPVLLAAAGGI-NIENAAAYAAAGADILVTSAPYY 262 (272)
T ss_pred CCceEEEECCC-CHHHHHHHHHcCCcEEEEChhhc
Confidence 57999999999 89999999999999997776543
No 337
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.66 E-value=4.8 Score=40.82 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEe-----------cCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccC
Q 013789 136 LDNLAKATELANAYNYDEINL-----------NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (436)
Q Consensus 136 p~~~~~aA~~~~~~G~d~IdL-----------N~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G 204 (436)
.+++.+..+.+++.|.+.+-- ..++|..++ ||.-+.+..++..+-+ .++||.+|.-..
T Consensus 76 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI------~S~~~~n~~LL~~va~-----~gkPvilstG~~ 144 (327)
T TIGR03586 76 WEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKI------ASFEITDLPLIRYVAK-----TGKPIIMSTGIA 144 (327)
T ss_pred HHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEE------CCccccCHHHHHHHHh-----cCCcEEEECCCC
Confidence 477778888888888775433 356776654 6666688887776544 489998876552
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCc-cEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q 013789 205 VDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (436)
Q Consensus 205 ~~~~~~~~~~~~~la~~~e~~Gv-d~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~ 283 (436)
+.+|+...+. .+.+.|. +.+.+|+ +.. +..+ ...+++..+..+.+.+ ++||..++=-....-..
T Consensus 145 -----t~~Ei~~Av~-~i~~~g~~~i~LlhC-~s~--YP~~-----~~~~nL~~i~~lk~~f-~~pVG~SDHt~G~~~~~ 209 (327)
T TIGR03586 145 -----TLEEIQEAVE-ACREAGCKDLVLLKC-TSS--YPAP-----LEDANLRTIPDLAERF-NVPVGLSDHTLGILAPV 209 (327)
T ss_pred -----CHHHHHHHHH-HHHHCCCCcEEEEec-CCC--CCCC-----cccCCHHHHHHHHHHh-CCCEEeeCCCCchHHHH
Confidence 3455555443 3456788 5566685 332 2221 1234577777777777 89997765333334444
Q ss_pred HHHHcCCC
Q 013789 284 AALRKGAH 291 (436)
Q Consensus 284 ~~l~~Gad 291 (436)
++...||+
T Consensus 210 aAva~GA~ 217 (327)
T TIGR03586 210 AAVALGAC 217 (327)
T ss_pred HHHHcCCC
Confidence 55557887
No 338
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.58 E-value=0.97 Score=42.60 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=55.9
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC
Q 013789 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (436)
Q Consensus 196 PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg 275 (436)
++..-+|. .+.++..+ +++.+.+.|+..|.|.-++. -.++.+.++.+++++ -+|+.|-
T Consensus 5 ~vv~Vir~-----~~~~~a~~-ia~al~~gGi~~iEit~~tp---------------~a~~~I~~l~~~~~~-~~vGAGT 62 (201)
T PRK06015 5 PVIPVLLI-----DDVEHAVP-LARALAAGGLPAIEITLRTP---------------AALDAIRAVAAEVEE-AIVGAGT 62 (201)
T ss_pred CEEEEEEc-----CCHHHHHH-HHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHCCC-CEEeeEe
Confidence 44444564 22334333 34455679999999976553 126778888777765 4799999
Q ss_pred CCCHHHHHHHHHcCCCeeee
Q 013789 276 INTVDEVNAALRKGAHHVMV 295 (436)
Q Consensus 276 I~s~~da~~~l~~Gad~Vmi 295 (436)
|.|.++++++++.||+.++-
T Consensus 63 Vl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 63 ILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred CcCHHHHHHHHHcCCCEEEC
Confidence 99999999999999999873
No 339
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=92.55 E-value=5 Score=41.33 Aligned_cols=193 Identities=12% Similarity=0.137 Sum_probs=106.2
Q ss_pred CCCCCChHHHHHHHH--HcCCCcEE-Eeccccchhhhhcccchhhh---hc-c---CCCCCcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLAR--LISKHAWL-YTEMLAAETIIYQQGNLDRF---LA-F---SPEQHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~~--~~Gg~gl~-~temv~~~~l~~~~~~~~~~---~~-~---~~~~~pi~vQL~g~~p~~~~~aA~ 144 (436)
|+ |.+...++.++. ..||++++ --|.+.......-.+..+.. .+ . +-+..++.+|+.+. .+++.+-|+
T Consensus 135 P~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~-~~em~~ra~ 212 (364)
T cd08210 135 PQ-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGP-PTQLLERAR 212 (364)
T ss_pred cc-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCC-HHHHHHHHH
Confidence 86 999999999984 44778776 34444333332211111111 11 1 11346899999975 778999999
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC-CcEEEEeccCCCCC----CcHHHHHHHHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDH----DSYNQLCDFIY 219 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~-iPvsvKiR~G~~~~----~~~~~~~~~la 219 (436)
.++++|.+++-++.. -||-+ .+..+++..+ +||-. .|.++-.. ..+. ..-.+.
T Consensus 213 ~a~~~Ga~~vMv~~~----------~~G~~----------~~~~l~~~~~~l~i~a-Hra~~ga~~~~~~~is-~~~~~~ 270 (364)
T cd08210 213 FAKEAGAGGVLIAPG----------LTGLD----------TFRELAEDFDFLPILA-HPAFAGAFVSSGDGIS-HALLFG 270 (364)
T ss_pred HHHHcCCCEEEeecc----------cchHH----------HHHHHHhcCCCcEEEE-ccccccccccCCCccc-HHHHHH
Confidence 999999999888742 12321 2333344445 55533 34332110 1111 111246
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhc----C---C-CcEEEEeCCCCCHHHHHHHHH-cCC
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----F---P-DLTFTLNGGINTVDEVNAALR-KGA 290 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~----~---~-~iPVIanGgI~s~~da~~~l~-~Ga 290 (436)
++..-+|+|.++.-+=. ++.. .. -+.+.++.+. . . ..|+. +||+ ++..+.++++ .|-
T Consensus 271 kl~RlaGad~~~~~~~~---g~~~------~~---~e~~~~ia~~~~~~~~~iK~~~Pv~-sgG~-~~~~v~~l~~~~G~ 336 (364)
T cd08210 271 TLFRLAGADAVIFPNYG---GRFG------FS---REECQAIADACRRPMGGLKPILPAP-GGGM-SVERAPEMVELYGP 336 (364)
T ss_pred HHHHHhCCCEEEeCCCc---CCcc------CC---HHHHHHHHHHhcCCccccCCCcCcC-CCCc-CHHHHHHHHHHcCC
Confidence 66677999988653110 0110 11 2223333331 1 1 23444 4565 5678888887 787
Q ss_pred C-eeeehHHHHhCCcc
Q 013789 291 H-HVMVGRAAYQNPWY 305 (436)
Q Consensus 291 d-~VmiGRa~l~~P~l 305 (436)
| .+++|-++++.|+=
T Consensus 337 Dvil~aGGgi~gHp~g 352 (364)
T cd08210 337 DVMLLIGGSLLRAGDD 352 (364)
T ss_pred cEEEEccccccCCCCC
Confidence 7 44668889999984
No 340
>PRK14017 galactonate dehydratase; Provisional
Probab=92.50 E-value=6.5 Score=40.50 Aligned_cols=141 Identities=9% Similarity=0.016 Sum_probs=86.9
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCC--cEEEEec
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCR 202 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i--PvsvKiR 202 (436)
-|+..-+.+.+++.+.+.++.+.+.||..+-+..|-+... .+. ..+++.-.+.++++++.++- .+.+=..
T Consensus 114 i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~---~~~-----~~~~~~d~~~i~avr~~~g~~~~l~vDaN 185 (382)
T PRK14017 114 IRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQY---IDS-----PRKVDAAVARVAAVREAVGPEIGIGVDFH 185 (382)
T ss_pred eeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCccc---ccc-----HHHHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 3555555567888887777766778999998875411110 010 02355667888889888753 3333222
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da 282 (436)
-+|+ ..+..++ .+.+++.|+.+|- + .+++.+++...++.+.. .+||.+.=.+.+.+++
T Consensus 186 ~~w~----~~~A~~~-~~~l~~~~~~~iE----e------------P~~~~d~~~~~~L~~~~-~~pIa~dEs~~~~~~~ 243 (382)
T PRK14017 186 GRVH----KPMAKVL-AKELEPYRPMFIE----E------------PVLPENAEALPEIAAQT-SIPIATGERLFSRWDF 243 (382)
T ss_pred CCCC----HHHHHHH-HHhhcccCCCeEE----C------------CCCcCCHHHHHHHHhcC-CCCEEeCCccCCHHHH
Confidence 2343 3344443 3455667777665 1 12222356666776654 8999888888999999
Q ss_pred HHHHHcC-CCeeee
Q 013789 283 NAALRKG-AHHVMV 295 (436)
Q Consensus 283 ~~~l~~G-ad~Vmi 295 (436)
..+++.| +|.|++
T Consensus 244 ~~li~~~a~d~v~~ 257 (382)
T PRK14017 244 KRVLEAGGVDIIQP 257 (382)
T ss_pred HHHHHcCCCCeEec
Confidence 9999854 777764
No 341
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.47 E-value=4.2 Score=41.61 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=64.9
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE-ccCccccc-CCCCCCCCC
Q 013789 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-HSRKALLN-GISPAENRT 249 (436)
Q Consensus 172 G~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v-hgrt~~~~-G~~~~~~~~ 249 (436)
|+..+.+.+++.++- .+++||-+|.-... +.+++...+..+ .+.|...|++ |.....+. +. .
T Consensus 191 ga~~~~n~~LL~~va-----~t~kPVllk~G~~~----t~ee~~~A~e~i-~~~Gn~~viL~erG~rtf~s~y------~ 254 (352)
T PRK13396 191 GARNMQNFSLLKKVG-----AQDKPVLLKRGMAA----TIDEWLMAAEYI-LAAGNPNVILCERGIRTFDRQY------T 254 (352)
T ss_pred CcccccCHHHHHHHH-----ccCCeEEEeCCCCC----CHHHHHHHHHHH-HHcCCCeEEEEecCCccCcCCC------C
Confidence 667778877655443 35899999976642 344555443333 3578765555 54332111 11 1
Q ss_pred CCCccHHHHHHHHhcCCCcEEEEeC----CCCC--HHHHHHHHHcCCCeeeehH
Q 013789 250 IPPLKYEYYYALLRDFPDLTFTLNG----GINT--VDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 250 i~~~~~~~v~~l~~~~~~iPVIanG----gI~s--~~da~~~l~~Gad~VmiGR 297 (436)
...+++..+..+.+.+ ++|||..- |-.+ +.-+.+++..||||++|=+
T Consensus 255 ~~~~dl~ai~~lk~~~-~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~ 307 (352)
T PRK13396 255 RNTLDLSVIPVLRSLT-HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEV 307 (352)
T ss_pred CCCcCHHHHHHHHHhh-CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEe
Confidence 2345688888876655 89998762 2222 2444556668999999864
No 342
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.44 E-value=0.9 Score=41.61 Aligned_cols=96 Identities=16% Similarity=0.223 Sum_probs=58.0
Q ss_pred HHHHHHHHhhccC-C-cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccH-HHH
Q 013789 182 VGEAMSVIAANTN-V-PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYY 258 (436)
Q Consensus 182 l~eiv~av~~~~~-i-PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~-~~v 258 (436)
+.+.++++++..+ . +|.|-+. +.+++.+. + ++|+|.|-+-.-+ +... +.+
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~-------~~ee~~ea----~-~~g~d~I~lD~~~---------------~~~~~~~v 118 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE-------NLEEAEEA----L-EAGADIIMLDNMS---------------PEDLKEAV 118 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES-------SHHHHHHH----H-HTT-SEEEEES-C---------------HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEcC-------CHHHHHHH----H-HhCCCEEEecCcC---------------HHHHHHHH
Confidence 4566666666542 2 2544332 34454442 2 4899998874221 1011 222
Q ss_pred HHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 259 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 259 ~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
..+....+++.|.++||| +.+.+.++.++|+|.+.+|...+.-|++
T Consensus 119 ~~l~~~~~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~~~ 164 (169)
T PF01729_consen 119 EELRELNPRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSAPPL 164 (169)
T ss_dssp HHHHHHTTTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSBE--
T ss_pred HHHhhcCCcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCCccc
Confidence 333233457999999999 7799999999999999999988777764
No 343
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.43 E-value=0.88 Score=45.92 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 255 ~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
++.+..+++.+ ..|++..|.|.+.++++.+++.|||+|.+|
T Consensus 125 ~~~i~~i~~~~-p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 125 INMIKHIKTHL-PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 56677777766 678899999999999999999999999877
No 344
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.42 E-value=14 Score=37.71 Aligned_cols=79 Identities=10% Similarity=0.141 Sum_probs=50.2
Q ss_pred HHHhhcCCccEEEEccCcc--cccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-----------------
Q 013789 219 YKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV----------------- 279 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~--~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~----------------- 279 (436)
.+..++.|+|.+.+.=.|. .|.+... ...+.++++.+.++.+..+++|++.-|+=..+
T Consensus 179 ~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~---p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~ 255 (347)
T PRK09196 179 ADFVKKTQVDALAIAIGTSHGAYKFTRK---PTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPET 255 (347)
T ss_pred HHHHHHhCcCeEhhhhccccCCCCCCCC---CChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCcccc
Confidence 3445679999997643332 1111000 01123679999888777657999999987554
Q ss_pred -----HHHHHHHHcCCCeeeehHHHH
Q 013789 280 -----DEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 280 -----~da~~~l~~Gad~VmiGRa~l 300 (436)
++++++++.|+.=|=|++.+.
T Consensus 256 ~G~~~e~i~~ai~~GI~KINi~Tdl~ 281 (347)
T PRK09196 256 YGVPVEEIQEGIKHGVRKVNIDTDLR 281 (347)
T ss_pred CCCCHHHHHHHHHCCCceEEeChHHH
Confidence 566777777777777777654
No 345
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.40 E-value=5.3 Score=37.70 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=77.9
Q ss_pred cEEEEEcC----CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 013789 126 PIVLQIGG----SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (436)
Q Consensus 126 pi~vQL~g----~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi 201 (436)
-+.+|+.- .+.....++++.+.+.|...+++ + .+ +.++.+++.+++|+....
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~------------------~~----~~~~~i~~~~~iPil~~~ 67 (219)
T cd04729 12 IVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--N------------------GV----EDIRAIRARVDLPIIGLI 67 (219)
T ss_pred EEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--C------------------CH----HHHHHHHHhCCCCEEEEE
Confidence 34455542 24577888999999999888763 1 11 344555555789986544
Q ss_pred ccCCCCC-----CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCC
Q 013789 202 RIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 276 (436)
Q Consensus 202 R~G~~~~-----~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI 276 (436)
+.+++.. .+.++ + +.+.++|+|.|.+..... .. + + .....+++..+.+.. ++|++. ++
T Consensus 68 ~~~~~~~~~~ig~~~~~----~-~~a~~aGad~I~~~~~~~---~~-p-~----~~~~~~~i~~~~~~g-~~~iiv--~v 130 (219)
T cd04729 68 KRDYPDSEVYITPTIEE----V-DALAAAGADIIALDATDR---PR-P-D----GETLAELIKRIHEEY-NCLLMA--DI 130 (219)
T ss_pred ecCCCCCCceeCCCHHH----H-HHHHHcCCCEEEEeCCCC---CC-C-C----CcCHHHHHHHHHHHh-CCeEEE--EC
Confidence 5444321 11222 2 234469999888753221 00 0 0 001134555555554 688776 68
Q ss_pred CCHHHHHHHHHcCCCeeeeh
Q 013789 277 NTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 277 ~s~~da~~~l~~Gad~VmiG 296 (436)
.+.+++.++.+.|+|.+.+.
T Consensus 131 ~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 131 STLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred CCHHHHHHHHHcCCCEEEcc
Confidence 89999999999999998653
No 346
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=92.40 E-value=1.2 Score=44.09 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHH
Q 013789 181 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (436)
Q Consensus 181 ~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~ 259 (436)
-+.+.++.+++.. ..+|.|-+ ++.+++.+ ++ ++|+|.|.+|.-+. .+ -.+.+.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv-------~tleea~e----a~-~~GaDiI~lDn~~~-------e~-------l~~~v~ 227 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEA-------DTIEQALT----VL-QASPDILQLDKFTP-------QQ-------LHHLHE 227 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC-------CCHHHHHH----HH-HcCcCEEEECCCCH-------HH-------HHHHHH
Confidence 3567777777653 34454433 24555444 22 59999999984332 00 022233
Q ss_pred HHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 260 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 260 ~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
.+....+++.|.++||| +.+.+.++.++|+|.+.+|--..+.|
T Consensus 228 ~l~~~~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 228 RLKFFDHIPTLAAAGGI-NPENIADYIEAGIDLFITSAPYYAAP 270 (277)
T ss_pred HHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcceecCc
Confidence 22222357889999999 88999999999999999987655544
No 347
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.24 E-value=6.6 Score=41.13 Aligned_cols=124 Identities=11% Similarity=0.019 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc--CCCCCCc
Q 013789 133 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDHDS 210 (436)
Q Consensus 133 g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~--G~~~~~~ 210 (436)
+.+++.+.+.++...+.||..+.+..| .+++.-.+.++++|+.+|--+.+.+.. +|+
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg-----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~---- 252 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG-----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWD---- 252 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC-----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----
Confidence 457777877777666789999887643 134445677888888775433333333 333
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC--CcEEEEeCCCCCHHHHHHHHHc
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALRK 288 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~--~iPVIanGgI~s~~da~~~l~~ 288 (436)
..+..++ .+.+++.++.+|- + .+++-+++...++.+... ++||.+.=.+.+..++.++++.
T Consensus 253 ~~~A~~~-~~~L~~~~l~~iE----E------------P~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~ 315 (415)
T cd03324 253 VPEAIEW-VKQLAEFKPWWIE----E------------PTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA 315 (415)
T ss_pred HHHHHHH-HHHhhccCCCEEE----C------------CCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc
Confidence 3333443 4556777877665 1 122223566666666542 5898776679999999999985
Q ss_pred C-CCeee
Q 013789 289 G-AHHVM 294 (436)
Q Consensus 289 G-ad~Vm 294 (436)
| +|.++
T Consensus 316 ~a~dil~ 322 (415)
T cd03324 316 GAIDVVQ 322 (415)
T ss_pred CCCCEEE
Confidence 4 67776
No 348
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=92.24 E-value=6.6 Score=40.69 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEeccCCCCCCcHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 212 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR~G~~~~~~~~ 212 (436)
+++.+.+.++.+.+.||..+-+..| . .+++.-.+.++++++.+| +.+.+=.--+|+ ..
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg----------~------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~----~~ 219 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIG----------G------APLDEDLRRIEAALDVLGDGARLAVDANGRFD----LE 219 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCC----------C------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----HH
Confidence 5677776666666789999988644 1 234445677888888775 333333333343 33
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCC--
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA-- 290 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Ga-- 290 (436)
+..++ .+.+++.++.+|- + .+++-+++...++.+.. ++||.+.=.+.+..++.++++.|+
T Consensus 220 ~A~~~-~~~l~~~~~~~iE----e------------P~~~~d~~~~~~L~~~~-~iPIa~gEs~~~~~~~~~li~~~a~~ 281 (385)
T cd03326 220 TAIAY-AKALAPYGLRWYE----E------------PGDPLDYALQAELADHY-DGPIATGENLFSLQDARNLLRYGGMR 281 (385)
T ss_pred HHHHH-HHHhhCcCCCEEE----C------------CCCccCHHHHHHHHhhC-CCCEEcCCCcCCHHHHHHHHHhCCcc
Confidence 33343 4455667776665 1 12233466677776664 899988888999999999999654
Q ss_pred ---Ceee
Q 013789 291 ---HHVM 294 (436)
Q Consensus 291 ---d~Vm 294 (436)
|.|+
T Consensus 282 ~~~div~ 288 (385)
T cd03326 282 PDRDVLQ 288 (385)
T ss_pred ccCCEEE
Confidence 6665
No 349
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.20 E-value=13 Score=36.68 Aligned_cols=194 Identities=12% Similarity=0.094 Sum_probs=105.9
Q ss_pred EEcCCC---CCChHHHHHHHH---HcCCCcEEEeccccchhhhhcccc----hhhhhccCCCCCcEEEEEcCCCHHHHHH
Q 013789 72 SVAPMM---DWTDNHYRTLAR---LISKHAWLYTEMLAAETIIYQQGN----LDRFLAFSPEQHPIVLQIGGSNLDNLAK 141 (436)
Q Consensus 72 ilAPMa---gvtd~~fr~~~~---~~Gg~gl~~temv~~~~l~~~~~~----~~~~~~~~~~~~pi~vQL~g~~p~~~~~ 141 (436)
++.|+. .+....+++++. ..|-.|+++.+... +...-..+. ++...+......|+++++.+.+.++..+
T Consensus 6 ~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG-E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~ 84 (285)
T TIGR00674 6 LITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTG-ESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAIS 84 (285)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCc-ccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHH
Confidence 455663 356667777763 34534555433222 211111111 1222223345679999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe---ccCCCCCCcHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC---RIGVDDHDSYNQLCDFI 218 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi---R~G~~~~~~~~~~~~~l 218 (436)
.|+.+++.|+|+|-+-. |.. .. ...+-+.+-.+.|.+++++||.+=- +.|.+. +.+. +
T Consensus 85 ~a~~a~~~Gad~v~v~p--P~y--------~~---~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l--~~~~----l 145 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVT--PYY--------NK---PTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSL--YPET----V 145 (285)
T ss_pred HHHHHHHcCCCEEEEcC--CcC--------CC---CCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCC--CHHH----H
Confidence 99999999999987753 331 10 2346677888888888899987643 223322 2222 2
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
.++++.-.+-+|--. ++ +...+.++.+... ++.|+...| ..+...+..|++|.+.|.
T Consensus 146 ~~L~~~~~v~giK~s---------~~---------d~~~~~~l~~~~~~~~~v~~G~d----~~~~~~~~~G~~G~i~~~ 203 (285)
T TIGR00674 146 KRLAEEPNIVAIKEA---------TG---------NLERISEIKAIAPDDFVVLSGDD----ALTLPMMALGGKGVISVT 203 (285)
T ss_pred HHHHcCCCEEEEEeC---------CC---------CHHHHHHHHHhcCCCeEEEECch----HHHHHHHHcCCCEEEehH
Confidence 334332212222111 10 1344445544443 454443322 344566779999999888
Q ss_pred HHHhCCcchhh
Q 013789 298 AAYQNPWYTLG 308 (436)
Q Consensus 298 a~l~~P~lf~~ 308 (436)
+.+ -|.++.+
T Consensus 204 ~~~-~P~~~~~ 213 (285)
T TIGR00674 204 ANV-APKLMKE 213 (285)
T ss_pred HHh-hHHHHHH
Confidence 763 3444433
No 350
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=92.18 E-value=9.5 Score=35.99 Aligned_cols=174 Identities=11% Similarity=0.136 Sum_probs=90.6
Q ss_pred CCCChHHHHHHHHHcCCCcEEEeccc--cchhhhhcccchhhhhc-cCCCCCcEEEEEc-CCCHHHHHHHHHHHHHCCCC
Q 013789 77 MDWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSNLDNLAKATELANAYNYD 152 (436)
Q Consensus 77 agvtd~~fr~~~~~~Gg~gl~~temv--~~~~l~~~~~~~~~~~~-~~~~~~pi~vQL~-g~~p~~~~~aA~~~~~~G~d 152 (436)
+|.|+..=..++.++| ++.+.-=+. ++..+. ......+.+ +.+.-.+ |-+| ..+++. ..+++++.+.|
T Consensus 6 CGit~~eda~~~~~~G-aD~iGfIf~~~SpR~V~--~~~a~~i~~~~~~~~~~--VgVf~~~~~~~---i~~~~~~~~~d 77 (207)
T PRK13958 6 CGFTTIKDVTAASQLP-IDAIGFIHYEKSKRHQT--ITQIKKLASAVPNHIDK--VCVVVNPDLTT---IEHILSNTSIN 77 (207)
T ss_pred cCCCcHHHHHHHHHcC-CCEEEEecCCCCcccCC--HHHHHHHHHhCCCCCCE--EEEEeCCCHHH---HHHHHHhCCCC
Confidence 6889988888888886 554432111 222111 111222322 2222222 3344 344554 44566788999
Q ss_pred EEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEE
Q 013789 153 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (436)
Q Consensus 153 ~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~ 231 (436)
.|+||.. .+++.+. .+++.. ++++..-++. +. . . .+.+... + ..+|++-
T Consensus 78 ~vQLHG~-----------------e~~~~~~----~l~~~~~~~~iika~~~--~~-~---~-~~~~~~~-~-~~~d~~L 127 (207)
T PRK13958 78 TIQLHGT-----------------ESIDFIQ----EIKKKYSSIKIIKALPA--DE-N---I-IQNINKY-K-GFVDLFI 127 (207)
T ss_pred EEEECCC-----------------CCHHHHH----HHhhcCCCceEEEEecc--cH-H---H-HHHHHHH-H-hhCCEEE
Confidence 9999941 2333333 333322 3454433333 11 1 1 1111111 1 2478888
Q ss_pred EccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH--cCCCeeeehHHHH
Q 013789 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGRAAY 300 (436)
Q Consensus 232 vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~--~Gad~VmiGRa~l 300 (436)
+......++|.+- +.+|+.+..+ ...|+|.+||| +++.+.++++ .+..+|=+.+|.-
T Consensus 128 lDs~~~~~GGtG~-------~~dw~~~~~~----~~~p~iLAGGL-~peNV~~a~~~~~~p~gVDvsSGVE 186 (207)
T PRK13958 128 IDTPSVSYGGTGQ-------TYDWTILKHI----KDIPYLIAGGI-NSENIQTVEQLKLSHQGYDIASGIE 186 (207)
T ss_pred EcCCCCCCCcCCc-------EeChHHhhhc----cCCCEEEECCC-CHHHHHHHHhcCCCCCEEEcccccC
Confidence 8753322333321 2247666543 24689999999 7888888774 4677887777764
No 351
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=92.13 E-value=14 Score=36.84 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEec-c-CCCCC--------CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCC
Q 013789 177 LDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDDH--------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 246 (436)
Q Consensus 177 ~~~~~l~eiv~av~~~~~iPvsvKiR-~-G~~~~--------~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~ 246 (436)
.+-+...++++-.. ..|++|-.-+- + |-++. .+.++..+ ..++.|+|++.+.=.|. .|.-.
T Consensus 115 eNi~~Trevv~~Ah-~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~----Fv~~TgvD~LAvaiGt~--HG~Y~-- 185 (285)
T PRK07709 115 ENVETTKKVVEYAH-ARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKH----LVEATGIDCLAPALGSV--HGPYK-- 185 (285)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEEEeccCCccCCcccccccCCCHHHHHH----HHHHhCCCEEEEeeccc--ccCcC--
Confidence 34455555555443 34666555432 1 22111 12334433 45678999998753343 12110
Q ss_pred CCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCeeeehHHHHh
Q 013789 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 247 ~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~VmiGRa~l~ 301 (436)
..+.++++.+.++.+.. ++|++.-||=..+ ++++++++.|+.=|=|++.+-.
T Consensus 186 --~~p~L~~~~L~~I~~~~-~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 238 (285)
T PRK07709 186 --GEPNLGFAEMEQVRDFT-GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQI 238 (285)
T ss_pred --CCCccCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 11446789998887765 9999999987766 7788888999999999998644
No 352
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.01 E-value=14 Score=36.73 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=52.6
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCeeeehHH
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~VmiGRa 298 (436)
+..++.|+|++.+.=.|.. |.-. .-+.++++.+.++.+.. ++|++.-||=..+ ++++++++.|+.=|=|+|.
T Consensus 162 ~Fv~~TgvD~LAvaiGt~H--G~y~----~~p~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~ 234 (284)
T PRK09195 162 EFVEATGIDSLAVAIGTAH--GMYK----GEPKLDFDRLENIRQWV-NIPLVLHGASGLPTKDIQQTIKLGICKVNVATE 234 (284)
T ss_pred HHHHHHCcCEEeeccCccc--cccC----CCCcCCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcH
Confidence 3446789999987543331 2110 01346799998887765 8999988865554 6677888899999999998
Q ss_pred HH
Q 013789 299 AY 300 (436)
Q Consensus 299 ~l 300 (436)
+.
T Consensus 235 l~ 236 (284)
T PRK09195 235 LK 236 (284)
T ss_pred HH
Confidence 76
No 353
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=92.00 E-value=7.1 Score=40.20 Aligned_cols=147 Identities=19% Similarity=0.172 Sum_probs=86.2
Q ss_pred hhhhhccCCCCCcEEEEEc---CCCHHHHHHHHHHHHHCCCCEEEec--CCCCCCccccCCCccccccCChHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG---GSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 188 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~---g~~p~~~~~aA~~~~~~G~d~IdLN--~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~a 188 (436)
+++++.. .++|++.-+. |-+++.+++.+..+...|+|.|--+ .+.+... .+.++.+.+.+.++.
T Consensus 117 ~R~~lgv--~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~---------p~~eRv~~v~~av~~ 185 (364)
T cd08210 117 LRALLGI--PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPFA---------PFEERVKACQEAVAE 185 (364)
T ss_pred HHHHhCC--CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccCC---------CHHHHHHHHHHHHHH
Confidence 3444433 5788887765 7789999999999999999998443 3322211 112445556666666
Q ss_pred HhhccCC--cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC
Q 013789 189 IAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP 266 (436)
Q Consensus 189 v~~~~~i--PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~ 266 (436)
+.+.+|- ++.+- +.. ..+++.+. ++.++++|++++-+..-.. | |..+..+.++.
T Consensus 186 a~~eTG~~~~y~~N----ita--~~~em~~r-a~~a~~~Ga~~vMv~~~~~---G-------------~~~~~~l~~~~- 241 (364)
T cd08210 186 ANAETGGRTLYAPN----VTG--PPTQLLER-ARFAKEAGAGGVLIAPGLT---G-------------LDTFRELAEDF- 241 (364)
T ss_pred HHhhcCCcceEEEe----cCC--CHHHHHHH-HHHHHHcCCCEEEeecccc---h-------------HHHHHHHHhcC-
Confidence 6555553 33332 222 23456554 4556779999988754322 1 44555565654
Q ss_pred C-cEEEEe----CCC------CCH-HHHHHHHH-cCCCeeee
Q 013789 267 D-LTFTLN----GGI------NTV-DEVNAALR-KGAHHVMV 295 (436)
Q Consensus 267 ~-iPVIan----GgI------~s~-~da~~~l~-~Gad~Vmi 295 (436)
. +||.+- |-+ .+. --..++.+ .|+|.+..
T Consensus 242 ~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~ 283 (364)
T cd08210 242 DFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVIF 283 (364)
T ss_pred CCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEEEe
Confidence 6 788765 221 222 22455455 89998754
No 354
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=91.97 E-value=5.5 Score=41.67 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=91.0
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
+++++.. .++|++.-+. |-+|+.+++.+..+..-|+|.|-=.-........ -+.++.+.+.+.++..
T Consensus 135 ~R~~lgv--~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~-------p~~eRv~~~~~a~~~a 205 (412)
T TIGR03326 135 VREFLGI--KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFN-------RFEERVEKLYKVRDKV 205 (412)
T ss_pred HHHHhCC--CCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCCc-------cHHHHHHHHHHHHHHH
Confidence 4444443 5799998886 6689999999998888899987433222211110 1113334444444444
Q ss_pred hhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhc--CCC
Q 013789 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPD 267 (436)
Q Consensus 190 ~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~--~~~ 267 (436)
.+.+|..... -.+++. ..+++.+. ++.+.+.|+.++-+..-+. | |..+..+.+. ..+
T Consensus 206 ~~eTG~~~~y--a~NiT~--~~~em~~r-a~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~~ 264 (412)
T TIGR03326 206 EAETGERKEY--LANITA--PVREMERR-AELVADLGGQYVMVDVVVC---G-------------WSALQYIRELTEDLG 264 (412)
T ss_pred HHHhCCcceE--EEEecC--CHHHHHHH-HHHHHHhCCCeEEEEeecc---c-------------hHHHHHHHHhhccCC
Confidence 4456654222 122222 24566655 3445568998887754332 3 5555566653 347
Q ss_pred cEEEE------------eCCCCCHHHHHHHHH-cCCCeeeehHH
Q 013789 268 LTFTL------------NGGINTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 268 iPVIa------------nGgI~s~~da~~~l~-~Gad~VmiGRa 298 (436)
+||.+ +-||.. .-..++.+ .|||.+.+++.
T Consensus 265 l~ih~Hra~~ga~~~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 265 LAIHAHRAMHAAFTRNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred eEEEEcCCcccccccCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 88887 235644 44666666 89999998876
No 355
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.96 E-value=2.3 Score=42.34 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=34.3
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 265 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 265 ~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
.+++.+.++||| +.+.+.++.++|+|.+.+|.-...-|++
T Consensus 244 ~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~~~ 283 (289)
T PRK07896 244 APTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTHSVPVL 283 (289)
T ss_pred CCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCCCcc
Confidence 457899999999 7899999999999999999977655664
No 356
>PRK15452 putative protease; Provisional
Probab=91.86 E-value=6.4 Score=41.61 Aligned_cols=128 Identities=14% Similarity=0.111 Sum_probs=76.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
.++.+.++|+|.|=+....-.... +... -..+-+.+.++-+++ .|+.|.+.+..-..+ .....+.+.+..+
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~-~~~~------f~~edl~eav~~ah~-~g~kvyvt~n~i~~e-~el~~~~~~l~~l 85 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRV-RNNE------FNHENLALGINEAHA-LGKKFYVVVNIAPHN-AKLKTFIRDLEPV 85 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhh-hccC------CCHHHHHHHHHHHHH-cCCEEEEEecCcCCH-HHHHHHHHHHHHH
Confidence 334556789999988543222110 0111 122445555554433 466776665542222 3344555554443
Q ss_pred hhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC--CCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 222 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 222 ~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG--gI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
.+.|+|+|+|+. +..+.-+.+..+++||.+.- .|++...+..+.+.|++.|.+.|-+
T Consensus 86 -~~~gvDgvIV~d--------------------~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 86 -IAMKPDALIMSD--------------------PGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred -HhCCCCEEEEcC--------------------HHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 469999999963 33333344445688888764 6788888888888999999988854
No 357
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=91.79 E-value=0.77 Score=43.09 Aligned_cols=78 Identities=24% Similarity=0.284 Sum_probs=51.5
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC
Q 013789 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (436)
Q Consensus 196 PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg 275 (436)
++..-+|. ++.+...++ ++.+-+.|+..+.+.-|+. -.++.+..+.++++++ +|+.|-
T Consensus 9 ~iiaVir~--~~~~~a~~~----~~al~~gGi~~iEiT~~t~---------------~a~~~I~~l~~~~p~~-~vGAGT 66 (196)
T PF01081_consen 9 KIIAVIRG--DDPEDAVPI----AEALIEGGIRAIEITLRTP---------------NALEAIEALRKEFPDL-LVGAGT 66 (196)
T ss_dssp SEEEEETT--SSGGGHHHH----HHHHHHTT--EEEEETTST---------------THHHHHHHHHHHHTTS-EEEEES
T ss_pred CEEEEEEc--CCHHHHHHH----HHHHHHCCCCEEEEecCCc---------------cHHHHHHHHHHHCCCC-eeEEEe
Confidence 44445564 222334333 3455579999999976653 1267777787777775 799999
Q ss_pred CCCHHHHHHHHHcCCCeeee
Q 013789 276 INTVDEVNAALRKGAHHVMV 295 (436)
Q Consensus 276 I~s~~da~~~l~~Gad~Vmi 295 (436)
|.|.++++++++.||+.++-
T Consensus 67 V~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 67 VLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp --SHHHHHHHHHHT-SEEEE
T ss_pred ccCHHHHHHHHHcCCCEEEC
Confidence 99999999999999999874
No 358
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=91.75 E-value=12 Score=37.06 Aligned_cols=151 Identities=12% Similarity=0.224 Sum_probs=89.6
Q ss_pred CCcEEEEEcCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 013789 124 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (436)
Q Consensus 124 ~~pi~vQL~g~-~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR 202 (436)
..|++++|=+. +.+...+ +.++||+-|-+..+- . .+..+.+...++++-.++ .|+.|-.-+-
T Consensus 69 ~VPV~lHLDH~~~~~~i~~----ai~~GftSVMiD~S~-l-----------~~eeNi~~t~~vv~~ah~-~gv~VEaElG 131 (276)
T cd00947 69 SVPVALHLDHGSSFELIKR----AIRAGFSSVMIDGSH-L-----------PFEENVAKTKEVVELAHA-YGVSVEAELG 131 (276)
T ss_pred CCCEEEECCCCCCHHHHHH----HHHhCCCEEEeCCCC-C-----------CHHHHHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 45777777644 4444433 345677766555321 1 122455666666665544 3555444321
Q ss_pred -c-CCCCC--------CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEE
Q 013789 203 -I-GVDDH--------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272 (436)
Q Consensus 203 -~-G~~~~--------~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIa 272 (436)
+ |-++. .+.++. ...+++.|+|.+.+.=.|. .|.-.. .-+.++++.+.++.+.. ++|++.
T Consensus 132 ~i~g~e~~~~~~~~~~T~pe~a----~~Fv~~TgvD~LAvsiGt~--HG~Y~~---~~p~L~~~~L~~i~~~~-~vPLVl 201 (276)
T cd00947 132 RIGGEEDGVVGDEGLLTDPEEA----EEFVEETGVDALAVAIGTS--HGAYKG---GEPKLDFDRLKEIAERV-NVPLVL 201 (276)
T ss_pred eecCccCCcccccccCCCHHHH----HHHHHHHCCCEEEeccCcc--ccccCC---CCCccCHHHHHHHHHHh-CCCEEE
Confidence 1 21111 123333 3445678999998743332 111000 01446799999988876 899999
Q ss_pred eCCCCCH-HHHHHHHHcCCCeeeehHHHHh
Q 013789 273 NGGINTV-DEVNAALRKGAHHVMVGRAAYQ 301 (436)
Q Consensus 273 nGgI~s~-~da~~~l~~Gad~VmiGRa~l~ 301 (436)
-||=..+ ++++++.+.|+.=|=+++.+..
T Consensus 202 HGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 202 HGGSGIPDEQIRKAIKLGVCKININTDLRL 231 (276)
T ss_pred eCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 9988777 5588888999999999998744
No 359
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.65 E-value=4 Score=36.56 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHH
Q 013789 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (436)
Q Consensus 137 ~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~ 216 (436)
+...+.++.+.+.|++.|.+-.--+.+.... . ..+ +.+..++...++|+.+.+...-. ... ..
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~------~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~ 74 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--T------DDK----EVLKEVAAETDLPLGVQLAINDA--AAA---VD 74 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--C------ccc----cHHHHHHhhcCCcEEEEEccCCc--hhh---hh
Confidence 5666777778888999887754222211110 1 111 33444455567888777654321 111 11
Q ss_pred HHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 217 ~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
..++.+.++|+|+|.+|+-.... +....+.+.++.+.++++||+..-...+..+...+.+.|+|.+++.
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~ 143 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEc
Confidence 11345567999999999643200 0011445556665544677766544333222222455899999987
Q ss_pred HH
Q 013789 297 RA 298 (436)
Q Consensus 297 Ra 298 (436)
..
T Consensus 144 ~~ 145 (200)
T cd04722 144 NG 145 (200)
T ss_pred CC
Confidence 54
No 360
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=91.46 E-value=18 Score=36.95 Aligned_cols=77 Identities=9% Similarity=0.144 Sum_probs=48.9
Q ss_pred HHhhcCCccEEEEccCcc--cccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH------------------
Q 013789 220 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV------------------ 279 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~--~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~------------------ 279 (436)
...++.|+|.+.+.=.|. .|.+.... .-+.++++.+.++.+..+++|++.-||=..+
T Consensus 180 ~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p---~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~ 256 (347)
T PRK13399 180 DFVQRTGVDALAIAIGTSHGAYKFTRKP---DGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETY 256 (347)
T ss_pred HHHHHHCcCEEhhhhccccCCcCCCCCC---ChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccC
Confidence 345678999997643332 11121000 0022678889888777657999999988766
Q ss_pred ----HHHHHHHHcCCCeeeehHHH
Q 013789 280 ----DEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 280 ----~da~~~l~~Gad~VmiGRa~ 299 (436)
++++++++.|+.=|=|++-+
T Consensus 257 g~~~e~~~kai~~GI~KINi~Tdl 280 (347)
T PRK13399 257 GVPVEEIQRGIKHGVRKVNIDTDI 280 (347)
T ss_pred CCCHHHHHHHHHCCCeEEEeChHH
Confidence 56667777777777766655
No 361
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=91.37 E-value=7.1 Score=39.57 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=83.3
Q ss_pred CcEEEEE-cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec-
Q 013789 125 HPIVLQI-GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 202 (436)
Q Consensus 125 ~pi~vQL-~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR- 202 (436)
-|+-... +..+++.+.+.++.+.+.||..+-+..|... . .+. .+++.-.+.+++|++.++--+.+.+.
T Consensus 109 i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~-~---~~~------~~~~~d~~~v~avr~~~g~~~~l~vDa 178 (341)
T cd03327 109 IPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGP-S---DGH------AGLRKNVELVRAIREAVGYDVDLMLDC 178 (341)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC-C---cch------HHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 3444332 2457888877777777789999988765311 0 011 23456677888888877533333332
Q ss_pred -cCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHH
Q 013789 203 -IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (436)
Q Consensus 203 -~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~d 281 (436)
.+|+ ..+..++ .+.+++.++.+|- ..+++.+++...++.+.. ++||.+.=.+.+..+
T Consensus 179 n~~~~----~~~A~~~-~~~l~~~~~~~iE----------------eP~~~~d~~~~~~l~~~~-~~pIa~gE~~~~~~~ 236 (341)
T cd03327 179 YMSWN----LNYAIKM-ARALEKYELRWIE----------------EPLIPDDIEGYAELKKAT-GIPISTGEHEYTVYG 236 (341)
T ss_pred CCCCC----HHHHHHH-HHHhhhcCCcccc----------------CCCCccCHHHHHHHHhcC-CCCeEeccCccCHHH
Confidence 2332 3333333 3455556655443 112333466666776654 899887667889999
Q ss_pred HHHHHH-cCCCeeee
Q 013789 282 VNAALR-KGAHHVMV 295 (436)
Q Consensus 282 a~~~l~-~Gad~Vmi 295 (436)
+.++++ ..+|.|++
T Consensus 237 ~~~~i~~~a~d~i~~ 251 (341)
T cd03327 237 FKRLLEGRAVDILQP 251 (341)
T ss_pred HHHHHHcCCCCEEec
Confidence 999998 45777763
No 362
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=91.33 E-value=4.5 Score=39.59 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=76.6
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccccc--------------hhhhhcccchhhhhccCCCCCcEEEEE-cC---CCHH
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEMLAA--------------ETIIYQQGNLDRFLAFSPEQHPIVLQI-GG---SNLD 137 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv~~--------------~~l~~~~~~~~~~~~~~~~~~pi~vQL-~g---~~p~ 137 (436)
|.+.-|.++..++.++| ++++..+=... +.+++..+..++- .....+++-+ |+ .+++
T Consensus 20 ~lTaYD~~~A~~~d~ag-vD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rg----a~~~~vv~DmPf~sy~~s~e 94 (261)
T PF02548_consen 20 MLTAYDYPSARIADEAG-VDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRG----APNAFVVADMPFGSYQASPE 94 (261)
T ss_dssp EEE--SHHHHHHHHHTT--SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-----TSSEEEEE--TTSSTSSHH
T ss_pred EEecccHHHHHHHHHcC-CCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhc----CCCceEEecCCcccccCCHH
Confidence 56677889999998885 88876551111 1111111111111 1233344444 22 3455
Q ss_pred H-HHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc---------CCCC
Q 013789 138 N-LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GVDD 207 (436)
Q Consensus 138 ~-~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~---------G~~~ 207 (436)
+ +..|.++++|.|+|.|-|-.|. . ..++++++.++ |+||.--+-+ |+..
T Consensus 95 ~av~nA~rl~ke~GadaVKlEGg~----------------~----~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGyr~ 153 (261)
T PF02548_consen 95 QAVRNAGRLMKEAGADAVKLEGGA----------------E----IAETIKALVDA-GIPVMGHIGLTPQSVHQLGGYRV 153 (261)
T ss_dssp HHHHHHHHHHHTTT-SEEEEEBSG----------------G----GHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS--
T ss_pred HHHHHHHHHHHhcCCCEEEeccch----------------h----HHHHHHHHHHC-CCcEEEEecCchhheeccCCceE
Confidence 4 4455566677999999765332 1 23444444433 8898766533 2222
Q ss_pred ----CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 208 ----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 208 ----~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
.++..++.+. ++.+|++|+-+|.+-.-. -+.-..+.+.. +||+|+-|
T Consensus 154 qGk~~~~a~~l~~~-A~ale~AGaf~ivlE~vp------------------~~la~~It~~l-~IPtIGIG 204 (261)
T PF02548_consen 154 QGKTAEEAEKLLED-AKALEEAGAFAIVLECVP------------------AELAKAITEAL-SIPTIGIG 204 (261)
T ss_dssp CSTSHHHHHHHHHH-HHHHHHHT-SEEEEESBB------------------HHHHHHHHHHS-SS-EEEES
T ss_pred EecCHHHHHHHHHH-HHHHHHcCccEEeeecCH------------------HHHHHHHHHhC-CCCEEecC
Confidence 1234455543 567889999999985422 23334455554 99999877
No 363
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.23 E-value=9.1 Score=37.01 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=74.8
Q ss_pred HHHHHHHHCCCCEEEec-------CCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHH
Q 013789 141 KATELANAYNYDEINLN-------CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 213 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN-------~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~ 213 (436)
-.|++++++||+.+-+. .|.|-. | + -..+.+.+.++.|...+++||++=+..|+-+ +..+
T Consensus 20 ~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~--------~--~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~--~~~~ 86 (238)
T PF13714_consen 20 LSARLAERAGFDAIATSGAGVAASLGYPDG--------G--L-LTLTEMLAAVRRIARAVSIPVIVDADTGYGN--DPEN 86 (238)
T ss_dssp HHHHHHHHTT-SEEEEHHHHHHHHTTS-SS--------S----S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSS--SHHH
T ss_pred HHHHHHHHcCCCEEEechHHHHHHcCCCCC--------C--C-CCHHHHHHHHHHHHhhhcCcEEEEcccccCc--hhHH
Confidence 57889999999998874 344431 1 1 3345566777888888899999999999854 2444
Q ss_pred HHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH---Hh--cCCCcEEEEeCCCCC--HHHHHHHH
Q 013789 214 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LR--DFPDLTFTLNGGINT--VDEVNAAL 286 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l---~~--~~~~iPVIanGgI~s--~~da~~~l 286 (436)
+.+.+. .++++|+.+|.+--... |. .....+++ -+.+.++ ++ .-+++-|++=-|... .++..+++
T Consensus 87 v~~tv~-~~~~aG~agi~IEDq~~---~~--~~~~l~~~--ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI 158 (238)
T PF13714_consen 87 VARTVR-ELERAGAAGINIEDQRC---GH--GGKQLVSP--EEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAI 158 (238)
T ss_dssp HHHHHH-HHHHCT-SEEEEESBST---TT--STT-B--H--HHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHH
T ss_pred HHHHHH-HHHHcCCcEEEeecccc---CC--CCCceeCH--HHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHH
Confidence 555444 44679999999954311 21 11112222 2233332 22 123566777767643 34444333
Q ss_pred -------HcCCCeeee
Q 013789 287 -------RKGAHHVMV 295 (436)
Q Consensus 287 -------~~Gad~Vmi 295 (436)
+.|||+|++
T Consensus 159 ~R~~aY~eAGAD~ifi 174 (238)
T PF13714_consen 159 ERAKAYAEAGADMIFI 174 (238)
T ss_dssp HHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHcCCCEEEe
Confidence 379999985
No 364
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.03 E-value=7.1 Score=38.82 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEec-c-CCCCC--------CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCC
Q 013789 177 LDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDDH--------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 246 (436)
Q Consensus 177 ~~~~~l~eiv~av~~~~~iPvsvKiR-~-G~~~~--------~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~ 246 (436)
.+.+...++++-.. ..|++|-.-+- + |.++. .+.++..+ ..++.|+|++.+.=.|.. |.-.
T Consensus 115 eNi~~T~~vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~----Fv~~TgvD~LAvaiGt~H--G~Y~-- 185 (286)
T PRK08610 115 ENVATTKKVVEYAH-EKGVSVEAELGTVGGQEDDVVADGIIYADPKECQE----LVEKTGIDALAPALGSVH--GPYK-- 185 (286)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEEEeccCCccCCCCCcccccCCHHHHHH----HHHHHCCCEEEeeccccc--cccC--
Confidence 45555666665543 34666544332 1 22111 12344444 446789999987544431 2110
Q ss_pred CCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCeeeehHHHH
Q 013789 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 247 ~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~VmiGRa~l 300 (436)
.-+.++++.+.++.+.. ++|++.-||=..+ ++++++++.|+.=|=|++.+-
T Consensus 186 --~~p~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 186 --GEPKLGFKEMEEIGLST-GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred --CCCCCCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHH
Confidence 01346789898887775 8999999987776 777888889999988888763
No 365
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=90.99 E-value=3 Score=42.11 Aligned_cols=106 Identities=12% Similarity=0.092 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcc-cccCCCCCCCCCCCCccHHHH
Q 013789 180 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYY 258 (436)
Q Consensus 180 ~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~-~~~G~~~~~~~~i~~~~~~~v 258 (436)
+...+-+...++..+.||.+-+- | .+.+++.+. ++.++++|+|+|.+|--.. ...+..+. ..+..-.+.+
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~-g----~~~~~~~~~-a~~~~~~gad~iElN~s~~~~~~~~~g~---~~~~~~~eiv 155 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLN-G----VSAGGWVDY-ARQIEEAGADALELNIYALPTDPDISGA---EVEQRYLDIL 155 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeC-C----CCHHHHHHH-HHHHHhcCCCEEEEeCCCCCCCCCcccc---hHHHHHHHHH
Confidence 44444444445555789888763 2 123444443 4556778999999975321 00011000 1111113445
Q ss_pred HHHHhcCCCcEEEE--eCCCCCHHHHHHHHH-cCCCeeee
Q 013789 259 YALLRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMV 295 (436)
Q Consensus 259 ~~l~~~~~~iPVIa--nGgI~s~~da~~~l~-~Gad~Vmi 295 (436)
..+.+. .++||++ ++++.+..++.++++ .|||+|.+
T Consensus 156 ~~v~~~-~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 156 RAVKSA-VTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHhc-cCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 555554 3789885 456667777776664 89999877
No 366
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.96 E-value=17 Score=35.80 Aligned_cols=155 Identities=17% Similarity=0.116 Sum_probs=89.8
Q ss_pred CCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEE
Q 013789 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (436)
Q Consensus 121 ~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvK 200 (436)
.....|+++++.+.+.++..+.|+.++++|+|+|-+-. |... . ...+-+.+-.++|.+.+++||.+=
T Consensus 67 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~~~-------~----~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 67 VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT--PYYN-------K----PTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC--CcCC-------C----CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567999999999999999999999999999987752 3210 0 234667788888888788998775
Q ss_pred ecc---CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC
Q 013789 201 CRI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 277 (436)
Q Consensus 201 iR~---G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~ 277 (436)
--. |.+- +.+. +.++.+.-.+-++--. ++ +...+.++.+...+--.+.+|.
T Consensus 134 n~P~~~g~~l--~~~~----~~~L~~~p~v~giK~s---------~~---------d~~~~~~~~~~~~~~~~v~~G~-- 187 (292)
T PRK03170 134 NVPGRTGVDI--LPET----VARLAEHPNIVGIKEA---------TG---------DLERVSELIELVPDDFAVYSGD-- 187 (292)
T ss_pred ECccccCCCC--CHHH----HHHHHcCCCEEEEEEC---------CC---------CHHHHHHHHHhCCCCeEEEECC--
Confidence 432 3221 2222 2333221222222211 10 1333444444333212344442
Q ss_pred CHHHHHHHHHcCCCeeeehHHHHhCCcchhhhhhhhhcC
Q 013789 278 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 316 (436)
Q Consensus 278 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 316 (436)
-..+...+..|++|++.|.+- ..|.++.+..+....|
T Consensus 188 -d~~~~~~l~~G~~G~is~~~n-~~P~~~~~l~~~~~~g 224 (292)
T PRK03170 188 -DALALPFLALGGVGVISVAAN-VAPKEMAEMCDAALAG 224 (292)
T ss_pred -hHhHHHHHHcCCCEEEEhHHh-hhHHHHHHHHHHHHCC
Confidence 122445667899999998886 3477655444433334
No 367
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=90.95 E-value=3.8 Score=38.84 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=85.1
Q ss_pred CCcEEEEEcCCCH-HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 013789 124 QHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (436)
Q Consensus 124 ~~pi~vQL~g~~p-~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR 202 (436)
..++++=+--+|. .....+++.+.+.|+|.+.+|.... .+.+...++...+. +.-+.+-+.
T Consensus 49 ~~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~G-----------------~~~l~~~~~~~~~~-~~~~~~v~~ 110 (216)
T cd04725 49 GFLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGG-----------------SDMLKAALEAAEEK-GKGLFAVTV 110 (216)
T ss_pred CCcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcCC-----------------HHHHHHHHHHHhcc-CCeEEEEEc
Confidence 3678888876664 4555566667778999999985322 23455555554432 222222222
Q ss_pred c-CCCCC-------CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 203 I-GVDDH-------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 203 ~-G~~~~-------~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
+ .++.. ....++...+++.+++.|++.+++.+... +.+.+. ..++.+ +..+
T Consensus 111 lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~------------------~~i~~~--~~~~~~-~ltP 169 (216)
T cd04725 111 LSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATEP------------------EALRRA--LGPDFL-ILTP 169 (216)
T ss_pred CCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcch------------------HHHHHh--hCCCCe-EEcC
Confidence 2 22111 12345555667788889988888765432 112111 123554 7778
Q ss_pred CCCC---------HHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 275 GINT---------VDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 275 gI~s---------~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
||.- ..+..++++.|++.+.+||+.+..+.
T Consensus 170 GI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~ 208 (216)
T cd04725 170 GIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAAD 208 (216)
T ss_pred CcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCC
Confidence 8863 23567777889999999999988776
No 368
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.89 E-value=3.8 Score=41.05 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc--CCcEEEEeccCCCCCCcHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~--~iPvsvKiR~G~~~~~~~~ 212 (436)
|.+.+.+..+.+.+.|+++|=++.. .|-...-..+.-.++++.+++.+ .+||.+-+.. .+..
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~Gs-----------tGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-----~~t~ 90 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGT-----------FGECATLTWEEKQAFVATVVETVAGRVPVFVGATT-----LNTR 90 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc-----------cccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-----CCHH
Confidence 6678888889888899999977742 12222233444455555555543 3777665432 1233
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEE------eCCCCCHHHHHHHH
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 286 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIa------nGgI~s~~da~~~l 286 (436)
+.++. ++.+++.|+|++-+.. ..|...+. ..-++++.++.+..+++||+. .|--.+++.+.++.
T Consensus 91 ~ai~~-a~~A~~~Gad~vlv~~--P~y~~~~~-------~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 91 DTIAR-TRALLDLGADGTMLGR--PMWLPLDV-------DTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHH-HHHHHHhCCCEEEECC--CcCCCCCH-------HHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 44443 5677889999998863 11111000 011555666666542467652 23333555555554
No 369
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=90.85 E-value=5.1 Score=39.74 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=53.6
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCeeeehHH
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~VmiGRa 298 (436)
+..++.|+|++.+.=.|.. |.-. ..+.++++.+.++.+.. ++|++.-||=..+ ++++++.+.|+.=|=|++.
T Consensus 160 ~Fv~~TgvD~LAvaiGt~H--G~yk----~~p~Ldf~~L~~I~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~ 232 (282)
T TIGR01858 160 EFVEATGVDSLAVAIGTAH--GLYK----KTPKLDFDRLAEIREVV-DVPLVLHGASDVPDEDVRRTIELGICKVNVATE 232 (282)
T ss_pred HHHHHHCcCEEecccCccc--cCcC----CCCccCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcH
Confidence 3456799999988544431 2110 12456799999987765 8999988876655 6677788899999999988
Q ss_pred HHh
Q 013789 299 AYQ 301 (436)
Q Consensus 299 ~l~ 301 (436)
+..
T Consensus 233 l~~ 235 (282)
T TIGR01858 233 LKI 235 (282)
T ss_pred HHH
Confidence 754
No 370
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=90.81 E-value=2.8 Score=42.49 Aligned_cols=117 Identities=11% Similarity=0.036 Sum_probs=66.3
Q ss_pred ccccCChHHHHHHHHHHhh-ccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCC
Q 013789 173 VSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251 (436)
Q Consensus 173 ~~Ll~~~~~l~eiv~av~~-~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~ 251 (436)
++.+.+|+...+. ..+++ ..++|+.+-+-..-......+++ .+..+..++|++.+|--....... +...+..
T Consensus 92 ~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~----~~~i~~i~adal~i~ln~~q~~~~-p~g~~~f- 164 (333)
T TIGR02151 92 RAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEA----QEAIDMIEADALAIHLNVLQELVQ-PEGDRNF- 164 (333)
T ss_pred hhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHH----HHHHHHhcCCCEEEcCcccccccC-CCCCcCH-
Confidence 3345578866666 77777 67899876443211100112223 233445578888887422100000 0000000
Q ss_pred CccHHHHHHHHhcCCCcEEEE--eCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 252 PLKYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 252 ~~~~~~v~~l~~~~~~iPVIa--nGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
..-++.+..+++.+ ++||+. +|.-.+.+.++.+.+.|+|+|-++-
T Consensus 165 ~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 165 KGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 00125566777765 899986 5666789999888889999999963
No 371
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=90.80 E-value=18 Score=35.75 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=89.6
Q ss_pred CCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEE
Q 013789 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (436)
Q Consensus 121 ~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvK 200 (436)
....-|+++++.+ +.++..+.++.++++|+|++-+- .|.-. . ...+-+.+-.++|.+++++||.+=
T Consensus 66 ~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~--pP~y~-----~------~~~~~i~~~f~~v~~~~~~pi~lY 131 (289)
T cd00951 66 TAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLL--PPYLT-----E------APQEGLYAHVEAVCKSTDLGVIVY 131 (289)
T ss_pred hCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC--CCCCC-----C------CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3456799999986 78888889999999999998773 23311 0 235678888888888889998887
Q ss_pred eccCCCCCCcHHHHHHHHHHHhhcC-CccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCC
Q 013789 201 CRIGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 278 (436)
Q Consensus 201 iR~G~~~~~~~~~~~~~la~~~e~~-Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s 278 (436)
-+.|.+- +.+. +.++.++. .+.+|--. ++ ++..+.++++... ++ .+.+|. .+
T Consensus 132 n~~g~~l--~~~~----l~~L~~~~pnivgiKds---------~~---------d~~~~~~~~~~~~~~~-~v~~G~-~~ 185 (289)
T cd00951 132 NRANAVL--TADS----LARLAERCPNLVGFKDG---------VG---------DIELMRRIVAKLGDRL-LYLGGL-PT 185 (289)
T ss_pred eCCCCCC--CHHH----HHHHHhcCCCEEEEEeC---------CC---------CHHHHHHHHHhcCCCe-EEEeCC-Cc
Confidence 6666432 2222 23344322 22222211 10 1444445544432 33 344553 21
Q ss_pred HHH-HHHHHHcCCCeeeehHHHHhCCcchhhhhh
Q 013789 279 VDE-VNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (436)
Q Consensus 279 ~~d-a~~~l~~Gad~VmiGRa~l~~P~lf~~~~~ 311 (436)
.+. +...+..||+|++.|.+-+ .|.++.+..+
T Consensus 186 ~d~~~~~~l~~Ga~G~is~~~n~-~P~~~~~l~~ 218 (289)
T cd00951 186 AEVFALAYLAMGVPTYSSAVFNF-VPEIALAFYA 218 (289)
T ss_pred chHhHHHHHHCCCCEEEechhhh-hHHHHHHHHH
Confidence 222 4566778999999887754 4666544443
No 372
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=90.78 E-value=2.9 Score=42.25 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=64.6
Q ss_pred ccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCc
Q 013789 175 LMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL 253 (436)
Q Consensus 175 Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~ 253 (436)
.+.+|+.. +-.+.+++.. +.|+.+-+-.......+.+++. ++.+..++|++.+|--......... ...
T Consensus 93 ~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~----~~i~~~~adalel~l~~~q~~~~~~------~~~ 161 (326)
T cd02811 93 ALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEAR----RAVEMIEADALAIHLNPLQEAVQPE------GDR 161 (326)
T ss_pred hccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHH----HHHHhcCCCcEEEeCcchHhhcCCC------CCc
Confidence 34567755 6677777755 4887664332111011333333 3445567899999852210000000 011
Q ss_pred cH----HHHHHHHhcCCCcEEEE--eCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 254 KY----EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 254 ~~----~~v~~l~~~~~~iPVIa--nGgI~s~~da~~~l~~Gad~VmiG 296 (436)
++ +.+..+++.+ ++||+. +|.-.+.+++..+.+.|+|+|-++
T Consensus 162 df~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 162 DFRGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 13 4566666665 899987 566688999988888999999985
No 373
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.72 E-value=4.3 Score=40.52 Aligned_cols=86 Identities=8% Similarity=0.076 Sum_probs=53.8
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCc-cccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPK-VAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~-v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la 219 (436)
-.|++++++||+.+-+...+-+.. .-..|. | + -..+.+.+.++.|...+++||++=+-.|+-+.. ++.+.+
T Consensus 27 ~SArl~e~aGf~ai~~sg~~~~as~lG~pD~-g--~-l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~---~v~r~V- 98 (294)
T TIGR02319 27 LSAKVIQQAGFPAVHMTGSGTSASMLGLPDL-G--F-TSVSEQAINAKNIVLAVDVPVIMDADAGYGNAM---SVWRAT- 98 (294)
T ss_pred HHHHHHHHcCCCEEEecHHHHHHHHcCCCCc-C--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---HHHHHH-
Confidence 578899999999997632111100 000121 2 2 234455667777778889999999999886533 233433
Q ss_pred HHhhcCCccEEEEcc
Q 013789 220 KVSSLSPTRHFIIHS 234 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhg 234 (436)
+.++++|+.+|++--
T Consensus 99 ~~~~~aGaagi~IED 113 (294)
T TIGR02319 99 REFERVGIVGYHLED 113 (294)
T ss_pred HHHHHcCCeEEEEEC
Confidence 345679999999953
No 374
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=90.72 E-value=19 Score=35.87 Aligned_cols=151 Identities=16% Similarity=0.105 Sum_probs=88.5
Q ss_pred CCCCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEE
Q 013789 121 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (436)
Q Consensus 121 ~~~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvK 200 (436)
.....|+++++.+ +.++..+.++.++++|+|++-+- .|... . ...+-+.+-.+++.+++++||.+=
T Consensus 73 ~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~--pP~y~-----~------~~~~~i~~~f~~va~~~~lpi~lY 138 (303)
T PRK03620 73 TAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLL--PPYLT-----E------APQEGLAAHVEAVCKSTDLGVIVY 138 (303)
T ss_pred hCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC--CCCCC-----C------CCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3456799999976 88888899999999999999773 23311 0 235678888888888889998886
Q ss_pred eccCCCCCCcHHHHHHHHHHHhhcC-CccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCC
Q 013789 201 CRIGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 278 (436)
Q Consensus 201 iR~G~~~~~~~~~~~~~la~~~e~~-Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s 278 (436)
-+.|.+- +.+. +.++.++. .+.+|--.. | +...+.++++... +.. |.+|.=.+
T Consensus 139 n~~g~~l--~~~~----l~~L~~~~pni~giK~s~------~------------d~~~~~~~~~~~~~~f~-vl~G~d~~ 193 (303)
T PRK03620 139 NRDNAVL--TADT----LARLAERCPNLVGFKDGV------G------------DIELMQRIVRALGDRLL-YLGGLPTA 193 (303)
T ss_pred cCCCCCC--CHHH----HHHHHhhCCCEEEEEeCC------C------------CHHHHHHHHHHcCCCeE-EEeCCCcc
Confidence 6665432 2322 23444222 233332210 1 1344445544332 443 44553111
Q ss_pred HHHHHHHHHcCCCeeeehHHHHhCCcchhhhhh
Q 013789 279 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311 (436)
Q Consensus 279 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~ 311 (436)
-..+..++..||+|...|.+-+ .|.++.+..+
T Consensus 194 e~~~~~~~~~G~~G~is~~an~-~P~~~~~l~~ 225 (303)
T PRK03620 194 EVFAAAYLALGVPTYSSAVFNF-VPEIALAFYR 225 (303)
T ss_pred hhhHHHHHhCCCCEEEecHHhh-hHHHHHHHHH
Confidence 1223345568999998887653 3555444333
No 375
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=90.70 E-value=5.3 Score=38.86 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=69.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCC----CCcHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCDF 217 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~----~~~~~~~~~~ 217 (436)
.|..+++.|+|-|||+..-.. | .+--...++.. +++.+++||-|-||+---+ ..+++.+.+-
T Consensus 13 ~a~~A~~~GAdRiELc~~L~~------G----GlTPS~g~i~~----~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~d 78 (248)
T PRK11572 13 CALTAQQAGADRIELCAAPKE------G----GLTPSLGVLKS----VRERVTIPVHPIIRPRGGDFCYSDGEFAAMLED 78 (248)
T ss_pred HHHHHHHcCCCEEEEccCcCC------C----CcCCCHHHHHH----HHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 455677889999999753211 1 12233334444 4455689999888873211 1234444444
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCC---CHHHHHHHH-HcCCCee
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---TVDEVNAAL-RKGAHHV 293 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~---s~~da~~~l-~~Gad~V 293 (436)
+ +.+.+.|+|.|.+=.-+. + ..++.+.+.++++....+|+...=-+. |+..+.+.+ +.|++.|
T Consensus 79 i-~~~~~~GadGvV~G~L~~--------d----g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rI 145 (248)
T PRK11572 79 I-ATVRELGFPGLVTGVLDV--------D----GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARI 145 (248)
T ss_pred H-HHHHHcCCCEEEEeeECC--------C----CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEE
Confidence 3 345679999998732221 1 123455666666555456666543332 344433333 3677766
Q ss_pred e
Q 013789 294 M 294 (436)
Q Consensus 294 m 294 (436)
.
T Consensus 146 L 146 (248)
T PRK11572 146 L 146 (248)
T ss_pred E
Confidence 5
No 376
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=90.64 E-value=3 Score=41.50 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=56.7
Q ss_pred CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 195 iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
.|+.+.+-...+ .+ ...+. .+.+++.|+++|.+|.-... .|. + ..|+.+..+++.. ++||+.-
T Consensus 116 ~~~~~ql~~~~~-~~---~~~~~-i~~~~~~g~~~i~l~~~~p~-~~~-----~----~~~~~i~~l~~~~-~~pvivK- 178 (299)
T cd02809 116 GPRWFQLYVPRD-RE---ITEDL-LRRAEAAGYKALVLTVDTPV-LGR-----R----LTWDDLAWLRSQW-KGPLILK- 178 (299)
T ss_pred CCeEEEEeecCC-HH---HHHHH-HHHHHHcCCCEEEEecCCCC-CCC-----C----CCHHHHHHHHHhc-CCCEEEe-
Confidence 577777654322 12 22232 23445689999999864331 111 1 2377888887765 7898886
Q ss_pred CCCCHHHHHHHHHcCCCeeeeh
Q 013789 275 GINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 275 gI~s~~da~~~l~~Gad~VmiG 296 (436)
++.+.+++..+.+.|+|+|.+.
T Consensus 179 ~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 179 GILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred ecCCHHHHHHHHHCCCCEEEEc
Confidence 4799999999999999999873
No 377
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=90.59 E-value=9.4 Score=37.26 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=82.5
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEec----c----------ccchhhhhcccchhhhhccCCCCCcEE-EEE-c---CCCH
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTE----M----------LAAETIIYQQGNLDRFLAFSPEQHPIV-LQI-G---GSNL 136 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~te----m----------v~~~~l~~~~~~~~~~~~~~~~~~pi~-vQL-~---g~~p 136 (436)
|.+.-|.++.+++.++| ++++..+ | ++.+.+++..+...+ ...+.++ +-+ | ..++
T Consensus 19 ~lTAYD~~~A~~~d~ag-vd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~R-----ga~~~~vv~DmPF~sy~~s~ 92 (268)
T COG0413 19 MLTAYDYPFAKLFDQAG-VDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRR-----GAPNAFVVADLPFGSYEVSP 92 (268)
T ss_pred EEeccccHHHhhhhhcC-CcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHh-----cCCCeeEEeCCCCcccCCCH
Confidence 66778999999999885 7776544 1 122222221111111 0112122 111 2 2234
Q ss_pred -HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc---------CCC
Q 013789 137 -DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GVD 206 (436)
Q Consensus 137 -~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~---------G~~ 206 (436)
+.+..|++++++.|+|.|-+-.| +.+.+.++.+.+. ++||.--+-+ |+.
T Consensus 93 ~~a~~nA~r~~ke~gA~aVKlEGG--------------------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGyk 151 (268)
T COG0413 93 EQALKNAARLMKEAGADAVKLEGG--------------------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGYK 151 (268)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC--------------------HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCee
Confidence 55666777888899999866532 2245555555443 6776554432 222
Q ss_pred C----CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 207 D----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 207 ~----~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
. .++..++.+- ++.+|++|+-++.+-+-. -++-.++-+. .+||+|+-|
T Consensus 152 vqGr~~~~a~~l~~d-A~ale~AGaf~ivlE~Vp------------------~~lA~~IT~~-lsiPtIGIG 203 (268)
T COG0413 152 VQGRTEESAEKLLED-AKALEEAGAFALVLECVP------------------AELAKEITEK-LSIPTIGIG 203 (268)
T ss_pred eecCCHHHHHHHHHH-HHHHHhcCceEEEEeccH------------------HHHHHHHHhc-CCCCEEeec
Confidence 1 1234444433 567899999999875421 2222344444 489998876
No 378
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=90.56 E-value=7.5 Score=39.66 Aligned_cols=122 Identities=9% Similarity=-0.002 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCC--cEEEEeccCCCCCCcHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYN 212 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i--PvsvKiR~G~~~~~~~~ 212 (436)
+++.+.+-++...+.||..+-+..| .+++.-.+.++++|+.+|- .+.+=.--+|+ ..
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg-----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~----~~ 196 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG-----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYS----RK 196 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC-----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC----HH
Confidence 5777777666666789999877543 1234556778888887753 33332222343 33
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHHcC-C
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKG-A 290 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~~G-a 290 (436)
+..++ .+.+++.++.++- ..+++-+++...++.+.. .++||.+.=.+.+..++.++++.| +
T Consensus 197 ~A~~~-~~~l~~~~~~~~E----------------eP~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~ 259 (352)
T cd03328 197 QALAL-ARAFADEGVTWFE----------------EPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAV 259 (352)
T ss_pred HHHHH-HHHHHHhCcchhh----------------CCCChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCC
Confidence 33443 4455666665443 122333466677777662 279988877789999999999954 6
Q ss_pred Ceee
Q 013789 291 HHVM 294 (436)
Q Consensus 291 d~Vm 294 (436)
|.|+
T Consensus 260 div~ 263 (352)
T cd03328 260 DVLQ 263 (352)
T ss_pred CEEe
Confidence 7765
No 379
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=90.54 E-value=1 Score=44.01 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=54.7
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++..+++|+++|.+..-....+|. ++.+..+.+. +++||+.--=|.++.++.++.+.|||+|.+.=.
T Consensus 76 A~~~~~~GA~aisvlte~~~f~g~------------~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~ 142 (260)
T PRK00278 76 AKAYEAGGAACLSVLTDERFFQGS------------LEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIVA 142 (260)
T ss_pred HHHHHhCCCeEEEEecccccCCCC------------HHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEec
Confidence 556678999999887544433331 6777777665 499999988888999999999999999998877
Q ss_pred HHhC
Q 013789 299 AYQN 302 (436)
Q Consensus 299 ~l~~ 302 (436)
++..
T Consensus 143 ~l~~ 146 (260)
T PRK00278 143 ALDD 146 (260)
T ss_pred cCCH
Confidence 7543
No 380
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=90.50 E-value=6.1 Score=39.30 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=53.9
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCeeeehH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~VmiGR 297 (436)
.+..++.|+|++.+.=.|.. |.-. .-|.++++.+.++.+.. ++|++.-||=..+ ++++++.+.|..=|=|++
T Consensus 161 ~~Fv~~TgvD~LAvaiGt~H--G~Y~----~~p~Ldfd~l~~I~~~~-~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T 233 (286)
T PRK12738 161 KRFVELTGVDSLAVAIGTAH--GLYS----KTPKIDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKVNVAT 233 (286)
T ss_pred HHHHHHhCCCEEEeccCccc--CCCC----CCCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 34456789999988544431 2110 12456799998888775 9999988876554 667778889999999988
Q ss_pred HHHh
Q 013789 298 AAYQ 301 (436)
Q Consensus 298 a~l~ 301 (436)
.+..
T Consensus 234 ~l~~ 237 (286)
T PRK12738 234 ELKI 237 (286)
T ss_pred HHHH
Confidence 7643
No 381
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=90.49 E-value=1.1 Score=42.71 Aligned_cols=144 Identities=16% Similarity=0.135 Sum_probs=80.5
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 013789 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (436)
Q Consensus 123 ~~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR 202 (436)
.+.++.+=|--+|+..+..-+ +.++|+|.+.+|..++ .+.+.+.++++++. |.-+.|=+-
T Consensus 55 ~~~~v~~DLK~~Di~~~v~~~--~~~~Gad~vTvH~~a~-----------------~~~i~~~~~~~~~~-g~~~~V~ll 114 (216)
T PRK13306 55 PDKIIVADTKIADAGKILAKM--AFEAGADWVTVICAAH-----------------IPTIKAALKVAKEF-NGEIQIELY 114 (216)
T ss_pred CCCEEEEEEeecCCcHHHHHH--HHHCCCCEEEEeCCCC-----------------HHHHHHHHHHHHHc-CCEEEEEEC
Confidence 356788888888876554423 6688999999995322 23455666665542 332222222
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEc-cCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHH
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vh-grt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~d 281 (436)
.++ +.+++ . ...+.|++.+.+| +..+...|.. -.+...+.++++.+. +..+...|||+ ++.
T Consensus 115 ts~----~~~~l----~-~~~~~~~~~~vl~~a~~~~~~G~v------~s~~~~~~ir~~~~~--~~~i~V~gGI~-~~~ 176 (216)
T PRK13306 115 GNW----TWEQA----Q-QWRDAGISQVIYHRSRDAQLAGVA------WGEKDLNKVKKLSDM--GFKVSVTGGLV-VED 176 (216)
T ss_pred CCC----CHHHH----H-HHHcCChhhhhhhhhhhhhhcCCC------CCHHHHHHHHHHhcC--CCeEEEcCCCC-Hhh
Confidence 222 12222 1 2234566666555 3333222211 011123445555432 45589999995 455
Q ss_pred HHHHHHcCCCeeeehHHHHhCCc
Q 013789 282 VNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 282 a~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
+....+.|||.+.+||++...++
T Consensus 177 ~~~~~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 177 LKLFKGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred HHHHhcCCCCEEEECCcccCCCC
Confidence 55555579999999999876665
No 382
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.42 E-value=20 Score=35.56 Aligned_cols=200 Identities=11% Similarity=0.026 Sum_probs=107.5
Q ss_pred EEEcCCC---CCChHHHHHHHH---HcC-CCcEEEeccccchhhhhccc---chhhhhccCCCCCcEEEEEcCCCHHHHH
Q 013789 71 FSVAPMM---DWTDNHYRTLAR---LIS-KHAWLYTEMLAAETIIYQQG---NLDRFLAFSPEQHPIVLQIGGSNLDNLA 140 (436)
Q Consensus 71 iilAPMa---gvtd~~fr~~~~---~~G-g~gl~~temv~~~~l~~~~~---~~~~~~~~~~~~~pi~vQL~g~~p~~~~ 140 (436)
.++.|+. .+....++.+++ ..| -.|+++.+...-.......+ -++...+.....-|+++++.+.+.++..
T Consensus 7 ~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i 86 (290)
T TIGR00683 7 ALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAV 86 (290)
T ss_pred eeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHH
Confidence 3555664 355667777763 344 23444443222111111111 1122223334557999999999999999
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCC-CcHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDH-DSYNQLCDFI 218 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~-~~~~~~~~~l 218 (436)
+.++.+++.|+|+|-+- -|... . ...+-+.+-.++|.++. ++|+.+=--++.... -+.+. +
T Consensus 87 ~la~~a~~~Gad~v~v~--~P~y~-------~----~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~----i 149 (290)
T TIGR00683 87 ELGKYATELGYDCLSAV--TPFYY-------K----FSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQ----F 149 (290)
T ss_pred HHHHHHHHhCCCEEEEe--CCcCC-------C----CCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHH----H
Confidence 99999999999998873 24421 1 23456777777776655 789876543322111 12222 2
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
.++.+.-.+-+|--. ++ +...+.++.+..+++- |.+|. -+.+...+..|++|.+.|.+
T Consensus 150 ~~L~~~pnv~giK~s---------~~---------d~~~~~~~~~~~~~~~-v~~G~---d~~~~~~l~~G~~G~i~~~~ 207 (290)
T TIGR00683 150 GELYKNPKVLGVKFT---------AG---------DFYLLERLKKAYPNHL-IWAGF---DEMMLPAASLGVDGAIGSTF 207 (290)
T ss_pred HHHhcCCCEEEEEeC---------CC---------CHHHHHHHHHhCCCCE-EEECc---hHHHHHHHHCCCCEEEecHH
Confidence 334331112222111 10 1344455555554664 45664 24455666789999998766
Q ss_pred HHhCCcchhhhh
Q 013789 299 AYQNPWYTLGHV 310 (436)
Q Consensus 299 ~l~~P~lf~~~~ 310 (436)
-+. |..+.+-.
T Consensus 208 n~~-P~~~~~i~ 218 (290)
T TIGR00683 208 NVN-GVRARQIF 218 (290)
T ss_pred HhC-HHHHHHHH
Confidence 543 65543333
No 383
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=90.40 E-value=7.1 Score=40.76 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=90.2
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
+++++.. .++|++.-+. |-+|+++++.+..+..-|.|.|-=.-.+...... -+.++.+.+.+.++..
T Consensus 134 ~R~llgv--~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~-------p~~eRv~~~~~a~~~a 204 (406)
T cd08207 134 TRRLTGV--EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYS-------PLDERVRAVMRVINDH 204 (406)
T ss_pred HHHHhCC--CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCC-------cHHHHHHHHHHHHHHH
Confidence 4555444 6799999886 6689999999998888898876332221111100 1113334444444444
Q ss_pred hhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcE
Q 013789 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 269 (436)
Q Consensus 190 ~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iP 269 (436)
.+.+|..... -.+++. +.+++.+. ++.+.+.|++++-+..-+. | |..+..+.++ .++|
T Consensus 205 ~~eTG~~~~y--~~NiT~--~~~em~~r-a~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~-~~l~ 262 (406)
T cd08207 205 AQRTGRKVMY--AFNITD--DIDEMRRN-HDLVVEAGGTCVMVSLNSV---G-------------LSGLAALRRH-SQLP 262 (406)
T ss_pred HHhhCCcceE--EEecCC--CHHHHHHH-HHHHHHhCCCeEEEecccc---c-------------hHHHHHHHhc-CCce
Confidence 4456654322 222332 25566665 3444579999887754332 2 5566677665 4888
Q ss_pred EE----EeC--------CCCCHHHHHHHHH-cCCCeeeehHH
Q 013789 270 FT----LNG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 270 VI----anG--------gI~s~~da~~~l~-~Gad~VmiGRa 298 (436)
|. +.| ||.. .-..++.+ .|+|.+.++.-
T Consensus 263 IhaHra~~ga~~r~p~~Gis~-~vl~kl~RLaGaD~~~~~~~ 303 (406)
T cd08207 263 IHGHRNGWGMLTRSPALGISF-QAYQKLWRLAGVDHLHVNGL 303 (406)
T ss_pred EEECCCcceecccCCCCCCcH-HHHHHHHHHcCCCccccCCC
Confidence 87 344 4433 34556666 89999998774
No 384
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.34 E-value=0.6 Score=50.07 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=45.8
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
.+.++|+|.|.|. .. .|.+. ...+.+..+++.++.--.|..|.|.++++++.+++.|||+|.+|.
T Consensus 249 ~Lv~aGvd~i~vd-~a---~g~~~--------~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~ 313 (502)
T PRK07107 249 ALVEAGADVLCID-SS---EGYSE--------WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGI 313 (502)
T ss_pred HHHHhCCCeEeec-Cc---ccccH--------HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECC
Confidence 3446999999885 21 12211 015567777776643235788999999999999999999998843
No 385
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.33 E-value=2.2 Score=40.50 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=56.2
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC
Q 013789 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (436)
Q Consensus 196 PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg 275 (436)
++..-+|. .+.++..+ +++.+.+.|++.|-+.-++. ...+.+.++.+++++ -+|+.|-
T Consensus 16 ~~iaV~r~-----~~~~~a~~-i~~al~~~Gi~~iEitl~~~---------------~~~~~I~~l~~~~p~-~~IGAGT 73 (212)
T PRK05718 16 PVVPVIVI-----NKLEDAVP-LAKALVAGGLPVLEVTLRTP---------------AALEAIRLIAKEVPE-ALIGAGT 73 (212)
T ss_pred CEEEEEEc-----CCHHHHHH-HHHHHHHcCCCEEEEecCCc---------------cHHHHHHHHHHHCCC-CEEEEee
Confidence 45444664 23344444 34455679999999864432 126778888888876 4799999
Q ss_pred CCCHHHHHHHHHcCCCeeee
Q 013789 276 INTVDEVNAALRKGAHHVMV 295 (436)
Q Consensus 276 I~s~~da~~~l~~Gad~Vmi 295 (436)
|.+.++++.+++.||+.++.
T Consensus 74 Vl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 74 VLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred ccCHHHHHHHHHcCCCEEEC
Confidence 99999999999999999874
No 386
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=90.24 E-value=0.97 Score=45.00 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHH---
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAAL--- 286 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l--- 286 (436)
.+.+.+.+. .+.+.|++.|.+.|-+.....++..+ +.+.+..+++.. .++|||+.=+-.+.+++.+..
T Consensus 20 ~~~l~~lv~-~~~~~Gv~gi~v~GstGE~~~Ls~~E-------r~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A 91 (294)
T TIGR02313 20 EEALRELIE-FQIEGGSHAISVGGTSGEPGSLTLEE-------RKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFA 91 (294)
T ss_pred HHHHHHHHH-HHHHcCCCEEEECccCcccccCCHHH-------HHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHH
Confidence 444444443 44469999999998775322232211 133444444433 268998666656666665444
Q ss_pred -HcCCCeeeehHHHHhCCc
Q 013789 287 -RKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 287 -~~Gad~VmiGRa~l~~P~ 304 (436)
+.|||+||+....+..|.
T Consensus 92 ~~~Gad~v~v~pP~y~~~~ 110 (294)
T TIGR02313 92 EEAGADAAMVIVPYYNKPN 110 (294)
T ss_pred HHcCCCEEEEcCccCCCCC
Confidence 379999999999887774
No 387
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=90.15 E-value=2.5 Score=39.88 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=57.4
Q ss_pred CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeC
Q 013789 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274 (436)
Q Consensus 195 iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanG 274 (436)
.++..-+|.- +.+++.+. ++.+-+.|+..|.+.-++. ...+.+..+.+++++--+|+.|
T Consensus 10 ~~~~~v~r~~-----~~~~~~~~-~~a~~~gGi~~iEvt~~~~---------------~~~~~i~~l~~~~~~~~~iGaG 68 (206)
T PRK09140 10 LPLIAILRGI-----TPDEALAH-VGALIEAGFRAIEIPLNSP---------------DPFDSIAALVKALGDRALIGAG 68 (206)
T ss_pred CCEEEEEeCC-----CHHHHHHH-HHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHcCCCcEEeEE
Confidence 3555556652 34444443 3344569999999864432 1156777887777543479999
Q ss_pred CCCCHHHHHHHHHcCCCeeeehH
Q 013789 275 GINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 275 gI~s~~da~~~l~~Gad~VmiGR 297 (436)
-|.+.+++..+++.||++++.+-
T Consensus 69 TV~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 69 TVLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred ecCCHHHHHHHHHcCCCEEECCC
Confidence 99999999999999999999853
No 388
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.13 E-value=2.3 Score=40.40 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=56.5
Q ss_pred CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCc--EEEE
Q 013789 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL--TFTL 272 (436)
Q Consensus 195 iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~i--PVIa 272 (436)
.++..-+|.. +.++..+ +++.+.+.|+..+.|.-|+. ..++.+.++.+++++- -+|+
T Consensus 13 ~~vi~vir~~-----~~~~a~~-~~~al~~~Gi~~iEit~~~~---------------~a~~~i~~l~~~~~~~p~~~vG 71 (213)
T PRK06552 13 NGVVAVVRGE-----SKEEALK-ISLAVIKGGIKAIEVTYTNP---------------FASEVIKELVELYKDDPEVLIG 71 (213)
T ss_pred CCEEEEEECC-----CHHHHHH-HHHHHHHCCCCEEEEECCCc---------------cHHHHHHHHHHHcCCCCCeEEe
Confidence 3555556652 3334443 34556679999999976653 1267788887776322 3799
Q ss_pred eCCCCCHHHHHHHHHcCCCeee
Q 013789 273 NGGINTVDEVNAALRKGAHHVM 294 (436)
Q Consensus 273 nGgI~s~~da~~~l~~Gad~Vm 294 (436)
.|-|.|.++++++++.||++++
T Consensus 72 aGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 72 AGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred eeeCCCHHHHHHHHHcCCCEEE
Confidence 9999999999999999999998
No 389
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=90.13 E-value=4.5 Score=38.15 Aligned_cols=123 Identities=12% Similarity=0.176 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHH
Q 013789 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (436)
Q Consensus 137 ~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~ 216 (436)
+.+.+-.+.+.++|+|++-+.+--+. +. -|.+.+.+++++.. +.|++. .|. +|...+..+..
T Consensus 72 ~~M~~dI~~~~~~GadG~VfG~L~~d------g~------iD~~~~~~Li~~a~---~~~~tF-HRA-fD~~~d~~~al- 133 (201)
T PF03932_consen 72 EIMKEDIRMLRELGADGFVFGALTED------GE------IDEEALEELIEAAG---GMPVTF-HRA-FDEVPDPEEAL- 133 (201)
T ss_dssp HHHHHHHHHHHHTT-SEEEE--BETT------SS------B-HHHHHHHHHHHT---TSEEEE--GG-GGGSSTHHHHH-
T ss_pred HHHHHHHHHHHHcCCCeeEEEeECCC------CC------cCHHHHHHHHHhcC---CCeEEE-eCc-HHHhCCHHHHH-
Confidence 45566677888999999877643232 12 46677888887754 678877 443 34433333332
Q ss_pred HHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHH-cCCCee
Q 013789 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHV 293 (436)
Q Consensus 217 ~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~-~Gad~V 293 (436)
..+. +.|++.|--+|... .+. ...+.+.++++.. .++.|++-|||. .+.+...++ +|+..+
T Consensus 134 --~~L~-~lG~~rVLTSGg~~------~a~------~g~~~L~~lv~~a~~~i~Im~GgGv~-~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 134 --EQLI-ELGFDRVLTSGGAP------TAL------EGIENLKELVEQAKGRIEIMPGGGVR-AENVPELVEETGVREI 196 (201)
T ss_dssp --HHHH-HHT-SEEEESTTSS------STT------TCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEE
T ss_pred --HHHH-hcCCCEEECCCCCC------CHH------HHHHHHHHHHHHcCCCcEEEecCCCC-HHHHHHHHHhhCCeEE
Confidence 3333 46999998776442 110 1155566665543 368999999995 577777777 888765
No 390
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=90.11 E-value=6.5 Score=39.10 Aligned_cols=80 Identities=16% Similarity=0.335 Sum_probs=54.4
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHH-HHHHHHHcCCCeeeehH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD-EVNAALRKGAHHVMVGR 297 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~-da~~~l~~Gad~VmiGR 297 (436)
.+..++.|+|.+.+.=.|.. |.-.. ...+.++++.+.++.+..+++|++.-||=..++ ++.++++.|+.=|=++|
T Consensus 161 ~~Fv~~TgvD~LAvaiGt~H--G~y~~--~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 236 (287)
T PF01116_consen 161 KEFVEETGVDALAVAIGTAH--GMYKG--GKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIGT 236 (287)
T ss_dssp HHHHHHHTTSEEEE-SSSBS--SSBSS--SSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEESH
T ss_pred HHHHHHhCCCEEEEecCccc--cccCC--CCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEeh
Confidence 34456799999988544431 11000 012456799998888764489999999887775 88888999999999999
Q ss_pred HHHhC
Q 013789 298 AAYQN 302 (436)
Q Consensus 298 a~l~~ 302 (436)
.+..-
T Consensus 237 ~~~~a 241 (287)
T PF01116_consen 237 ELRRA 241 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 391
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=90.07 E-value=0.19 Score=46.30 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=40.7
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
+.+++...|+|.+-+... -..+.++.+. .++|||+.|=|.+.+++.++++.||++|.-..--
T Consensus 111 ~~i~~~~PD~vEilPg~~-----------------p~vi~~i~~~-~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~ 172 (175)
T PF04309_consen 111 KQIEQSKPDAVEILPGVM-----------------PKVIKKIREE-TNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKE 172 (175)
T ss_dssp HHHHHHT-SEEEEESCCH-----------------HHHHCCCCCC-CSS-EEEESS--SHHHHHHHCCTTCEEEEE--HH
T ss_pred HHHhhcCCCEEEEchHHH-----------------HHHHHHHHHh-cCCCEEeecccCCHHHHHHHHHcCCEEEEcCChH
Confidence 345678899999864321 1222222333 3799999999999999999999999999877654
Q ss_pred H
Q 013789 300 Y 300 (436)
Q Consensus 300 l 300 (436)
|
T Consensus 173 L 173 (175)
T PF04309_consen 173 L 173 (175)
T ss_dssp H
T ss_pred h
Confidence 4
No 392
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=90.04 E-value=14 Score=37.83 Aligned_cols=124 Identities=11% Similarity=0.086 Sum_probs=76.5
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCC--cEEEEec
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCR 202 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i--PvsvKiR 202 (436)
.|+-..+.+.+++.+.+.++.+.+.||..+-+.. .+.++++++.+|- .+.+-..
T Consensus 116 v~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv------------------------~~~v~avre~~G~~~~l~vDaN 171 (361)
T cd03322 116 IMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL------------------------PKLFEAVREKFGFEFHLLHDVH 171 (361)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH------------------------HHHHHHHHhccCCCceEEEECC
Confidence 3444334456677776666666667998886522 5668888887753 3433333
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da 282 (436)
.+|+ .++..++ .+.+++.++.++- + .+++.+++...++.+.. ++||.+.=.+.+.+++
T Consensus 172 ~~w~----~~~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~~-~~pia~gE~~~~~~~~ 229 (361)
T cd03322 172 HRLT----PNQAARF-GKDVEPYRLFWME----D------------PTPAENQEAFRLIRQHT-ATPLAVGEVFNSIWDW 229 (361)
T ss_pred CCCC----HHHHHHH-HHHhhhcCCCEEE----C------------CCCcccHHHHHHHHhcC-CCCEEeccCCcCHHHH
Confidence 3343 3343443 3455667776655 1 12333466677777664 8998876678899999
Q ss_pred HHHHHcC-CCeee
Q 013789 283 NAALRKG-AHHVM 294 (436)
Q Consensus 283 ~~~l~~G-ad~Vm 294 (436)
..+++.| +|.++
T Consensus 230 ~~~i~~~a~di~~ 242 (361)
T cd03322 230 QNLIQERLIDYIR 242 (361)
T ss_pred HHHHHhCCCCEEe
Confidence 9999854 67765
No 393
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=89.96 E-value=0.76 Score=44.88 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=49.3
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHH
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa 298 (436)
++..+++|+++|.|-.-....+| .++.+..+.+.+ ++||...-=|.|+.++.++...|||+|.+=-+
T Consensus 74 a~~y~~~GA~aiSVlTe~~~F~G------------s~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~ 140 (254)
T PF00218_consen 74 AKAYEEAGAAAISVLTEPKFFGG------------SLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIAA 140 (254)
T ss_dssp HHHHHHTT-SEEEEE--SCCCHH------------HHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEEEEEGG
T ss_pred HHHHHhcCCCEEEEECCCCCCCC------------CHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEeehhHH
Confidence 55677899999999755444444 277777777765 89999999999999999999999999987555
Q ss_pred HHhC
Q 013789 299 AYQN 302 (436)
Q Consensus 299 ~l~~ 302 (436)
+|.+
T Consensus 141 ~L~~ 144 (254)
T PF00218_consen 141 ILSD 144 (254)
T ss_dssp GSGH
T ss_pred hCCH
Confidence 5544
No 394
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=89.86 E-value=2.1 Score=43.75 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=35.7
Q ss_pred ccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 253 ~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
..|+.+..+++.. ++|||.- +|.+.+++..+.+.|||+|.+.
T Consensus 200 ~~~~~i~~l~~~~-~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 200 LTWDDIKWLRKHT-KLPIVLK-GVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred CCHHHHHHHHHhc-CCcEEEE-cCCCHHHHHHHHHcCCCEEEEE
Confidence 4588888887765 8999887 7789999999999999999875
No 395
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=89.62 E-value=23 Score=35.17 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=53.1
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCeeeehHH
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~VmiGRa 298 (436)
+..++.|+|++.|.=.|. .|.-. ..+.++|+.+.++.+.. ++|++.-||=..+ ++++++++.|+.=|=|++.
T Consensus 162 ~Fv~~TgvD~LAvaiGt~--HG~y~----~~p~Ld~~~L~~I~~~~-~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~ 234 (284)
T PRK12737 162 EFVERTGIDSLAVAIGTA--HGLYK----GEPKLDFERLAEIREKV-SIPLVLHGASGVPDEDVKKAISLGICKVNVATE 234 (284)
T ss_pred HHHHHhCCCEEeeccCcc--ccccC----CCCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcH
Confidence 345679999998754343 12110 12446799998887765 8999988876655 6677788899999999998
Q ss_pred HHh
Q 013789 299 AYQ 301 (436)
Q Consensus 299 ~l~ 301 (436)
+-.
T Consensus 235 l~~ 237 (284)
T PRK12737 235 LKI 237 (284)
T ss_pred HHH
Confidence 754
No 396
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=89.62 E-value=2.8 Score=39.64 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=56.4
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC
Q 013789 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 275 (436)
Q Consensus 196 PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg 275 (436)
|+..-+|. + +.++... +++.+-+.|++.|.+.=|+. ...+.++.+++++++ -+|+.|=
T Consensus 14 ~vI~Vlr~--~---~~e~a~~-~a~Ali~gGi~~IEITl~sp---------------~a~e~I~~l~~~~p~-~lIGAGT 71 (211)
T COG0800 14 PVVPVIRG--D---DVEEALP-LAKALIEGGIPAIEITLRTP---------------AALEAIRALAKEFPE-ALIGAGT 71 (211)
T ss_pred CeeEEEEe--C---CHHHHHH-HHHHHHHcCCCeEEEecCCC---------------CHHHHHHHHHHhCcc-cEEcccc
Confidence 44444554 2 2333333 34455679999999976653 127788888888864 4899999
Q ss_pred CCCHHHHHHHHHcCCCeee
Q 013789 276 INTVDEVNAALRKGAHHVM 294 (436)
Q Consensus 276 I~s~~da~~~l~~Gad~Vm 294 (436)
|-|++++.++.+.||+.+.
T Consensus 72 VL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 72 VLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred ccCHHHHHHHHHcCCCEEE
Confidence 9999999999999999876
No 397
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=89.62 E-value=13 Score=38.40 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=86.0
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
+++++.. .++|++.-++ |-+++.+++.+..+.+.|+|+|-..-..-... =....++.+.+.+.++.+
T Consensus 121 ~R~~~gv--~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~-------~~~~eER~~~v~~av~~a 191 (367)
T cd08205 121 LRRLLGV--HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP-------YAPFEERVRACMEAVRRA 191 (367)
T ss_pred HHHHhCC--CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc-------cCCHHHHHHHHHHHHHHH
Confidence 4445443 5789998887 45689999999999999999885433222111 111224556666667666
Q ss_pred hhccCC-c-EEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCC
Q 013789 190 AANTNV-P-VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 267 (436)
Q Consensus 190 ~~~~~i-P-vsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~ 267 (436)
.+.+|- + +..- ... +..++.+. ++.++++|+|++-+..-.. | +..+..+.++. +
T Consensus 192 ~~~TG~~~~y~~n----it~--~~~e~i~~-a~~a~~~Gad~vmv~~~~~---g-------------~~~~~~l~~~~-~ 247 (367)
T cd08205 192 NEETGRKTLYAPN----ITG--DPDELRRR-ADRAVEAGANALLINPNLV---G-------------LDALRALAEDP-D 247 (367)
T ss_pred HHhhCCcceEEEE----cCC--CHHHHHHH-HHHHHHcCCCEEEEecccc---c-------------ccHHHHHHhcC-C
Confidence 655543 2 2222 221 23455554 5566789999988753221 2 11223344443 6
Q ss_pred cEEEEe----C-------CCCCHHHHHHHHH-cCCCeeeehH
Q 013789 268 LTFTLN----G-------GINTVDEVNAALR-KGAHHVMVGR 297 (436)
Q Consensus 268 iPVIan----G-------gI~s~~da~~~l~-~Gad~VmiGR 297 (436)
+||.+- | .+.+..-..++.+ .|+|.+..+.
T Consensus 248 lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~ 289 (367)
T cd08205 248 LPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFPG 289 (367)
T ss_pred CeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccCC
Confidence 666542 1 1344455555555 7888887554
No 398
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.58 E-value=4.5 Score=38.74 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=52.8
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHH----hcCCCcEEE
Q 013789 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL----RDFPDLTFT 271 (436)
Q Consensus 196 PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~----~~~~~iPVI 271 (436)
+|..-+|. + +.++..+ +++.+.+.|+..|.|.-|+.. ..+.+.+++ ++++++ +|
T Consensus 16 ~vi~Vvr~--~---~~~~a~~-~~~al~~gGi~~iEiT~~tp~---------------a~~~i~~l~~~~~~~~p~~-~v 73 (222)
T PRK07114 16 GMVPVFYH--A---DVEVAKK-VIKACYDGGARVFEFTNRGDF---------------AHEVFAELVKYAAKELPGM-IL 73 (222)
T ss_pred CEEEEEEc--C---CHHHHHH-HHHHHHHCCCCEEEEeCCCCc---------------HHHHHHHHHHHHHhhCCCe-EE
Confidence 44444664 2 2333333 344556799999999866530 145555554 333444 79
Q ss_pred EeCCCCCHHHHHHHHHcCCCeeee
Q 013789 272 LNGGINTVDEVNAALRKGAHHVMV 295 (436)
Q Consensus 272 anGgI~s~~da~~~l~~Gad~Vmi 295 (436)
+.|-|.|.++++++++.||+.++-
T Consensus 74 GaGTVl~~e~a~~a~~aGA~FiVs 97 (222)
T PRK07114 74 GVGSIVDAATAALYIQLGANFIVT 97 (222)
T ss_pred eeEeCcCHHHHHHHHHcCCCEEEC
Confidence 999999999999999999999873
No 399
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.58 E-value=5.3 Score=39.63 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=57.3
Q ss_pred HHHHHHHhhccC--CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHH
Q 013789 183 GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (436)
Q Consensus 183 ~eiv~av~~~~~--iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~ 260 (436)
.+.++++++..+ .+|.|-+ ++.+++.+. + ++|+|.|-+-.-+ .+.+.+
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv-------~tleea~ea----~-~~gaDiI~LDn~s------------------~e~l~~ 230 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEV-------DTLDQLEEA----L-ELGVDAVLLDNMT------------------PDTLRE 230 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEe-------CCHHHHHHH----H-HcCCCEEEeCCCC------------------HHHHHH
Confidence 345555555443 3343322 345555442 2 5899998874221 222333
Q ss_pred HHhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 261 LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 261 l~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
.++.. ...|+-++||| +.+.+.++.++|+|.+.+|.-...-|++
T Consensus 231 av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galthsa~~~ 275 (281)
T PRK06106 231 AVAIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLTHSAPVL 275 (281)
T ss_pred HHHHhCCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCCCcc
Confidence 33322 25789999999 7899999999999999999966644553
No 400
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=89.47 E-value=17 Score=37.83 Aligned_cols=142 Identities=11% Similarity=0.168 Sum_probs=82.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCc--c-ccCC---Ccccc--c-------c---CChHHHHHHHHHHhhcc
Q 013789 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPK--V-AGHG---CFGVS--L-------M---LDPKFVGEAMSVIAANT 193 (436)
Q Consensus 132 ~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~--v-~r~g---~yG~~--L-------l---~~~~~l~eiv~av~~~~ 193 (436)
.+.+++.+.+-++.+.+.||..+-+..|-|... . ..++ .++-. . . ...+...+.+++|++.+
T Consensus 124 ~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~ 203 (404)
T PRK15072 124 NGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF 203 (404)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh
Confidence 455777776666666678999999987643210 0 0000 00000 0 0 11244567899999887
Q ss_pred CCcEEEEecc--CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEE
Q 013789 194 NVPVSVKCRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 271 (436)
Q Consensus 194 ~iPvsvKiR~--G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVI 271 (436)
+--+.+.+-. +|+ .++..++ .+.+++.++.+|- + .+++-+++...++.+.. ++||.
T Consensus 204 G~~~~l~vDaN~~w~----~~~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~~-~iPIa 261 (404)
T PRK15072 204 GFDLHLLHDVHHRLT----PIEAARL-GKSLEPYRLFWLE----D------------PTPAENQEAFRLIRQHT-TTPLA 261 (404)
T ss_pred CCCceEEEECCCCCC----HHHHHHH-HHhccccCCcEEE----C------------CCCccCHHHHHHHHhcC-CCCEE
Confidence 5333333333 332 3444443 4455667766654 1 12222356666776654 89988
Q ss_pred EeCCCCCHHHHHHHHHcC-CCeeee
Q 013789 272 LNGGINTVDEVNAALRKG-AHHVMV 295 (436)
Q Consensus 272 anGgI~s~~da~~~l~~G-ad~Vmi 295 (436)
+.=.+.+..+++++++.| +|.|++
T Consensus 262 ~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 262 VGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred eCcCccCHHHHHHHHHcCCCCEEec
Confidence 877789999999999854 787774
No 401
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=89.37 E-value=15 Score=37.56 Aligned_cols=136 Identities=14% Similarity=0.141 Sum_probs=78.5
Q ss_pred CCcEEEEEcCCCHH-HHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 013789 124 QHPIVLQIGGSNLD-NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (436)
Q Consensus 124 ~~pi~vQL~g~~p~-~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR 202 (436)
.-|+...+...+++ .+.++.....+.||..+-+..|- .+++.-.+.++++++.++--+ +++
T Consensus 130 ~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~~~re~~g~~~--~l~ 191 (368)
T TIGR02534 130 SVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGA----------------RDPADDVAHVVAIAKALGDRA--SVR 191 (368)
T ss_pred ceEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeCC----------------CCcHHHHHHHHHHHHhcCCCc--EEE
Confidence 34555445555554 34444444556799988765431 234445667777877765333 333
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da 282 (436)
+..+..=+..+..++ .+.+++.++.+|- ..+++-+++.+.++.+.. .+||.+.=-+.+..++
T Consensus 192 ~DaN~~~~~~~A~~~-~~~l~~~~~~~iE----------------eP~~~~d~~~~~~l~~~~-~~pia~dE~~~~~~~~ 253 (368)
T TIGR02534 192 VDVNAAWDERTALHY-LPQLADAGVELIE----------------QPTPAENREALARLTRRF-NVPIMADESVTGPADA 253 (368)
T ss_pred EECCCCCCHHHHHHH-HHHHHhcChhheE----------------CCCCcccHHHHHHHHHhC-CCCEEeCcccCCHHHH
Confidence 322211123344443 3455666665443 112223366666776654 8999988889999999
Q ss_pred HHHHH-cCCCeeee
Q 013789 283 NAALR-KGAHHVMV 295 (436)
Q Consensus 283 ~~~l~-~Gad~Vmi 295 (436)
.++++ .++|.|++
T Consensus 254 ~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 254 LAIAKASAADVFAL 267 (368)
T ss_pred HHHHHhCCCCEEEE
Confidence 99998 56888774
No 402
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=89.34 E-value=12 Score=37.94 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=38.0
Q ss_pred HHhhcCCccEEEEccCcccccCCCCC-CCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPA-ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~-~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~ 283 (436)
+.+++.|+|.+.+.=.|.. |.-.. +...-+.++++.+.++.+..+++|++.-||=..+++..
T Consensus 171 ~Fv~~TgvD~LAvaiGt~H--G~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~ 233 (321)
T PRK07084 171 DFVKKTGVDSLAISIGTSH--GAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYV 233 (321)
T ss_pred HHHHHhCCCEEeecccccc--ccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHH
Confidence 3446789999987544431 11100 00002456799998888776579999999885554333
No 403
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=89.32 E-value=9.5 Score=38.41 Aligned_cols=129 Identities=13% Similarity=0.104 Sum_probs=77.8
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccC
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G 204 (436)
-|+...+...+++++.+.++.+.+.||..+.+..+ | . .+ .+.++++++.+ | .+++++.
T Consensus 122 i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~--------~------~d----~~~v~~vr~~~--~-~~~l~vD 179 (324)
T TIGR01928 122 APAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-P--------Q------IM----HQLVKLRRLRF--P-QIPLVID 179 (324)
T ss_pred EEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C--------c------hh----HHHHHHHHHhC--C-CCcEEEE
Confidence 34554455667888877777777789998877642 1 0 12 25566677665 3 2344442
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH
Q 013789 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 284 (436)
Q Consensus 205 ~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~ 284 (436)
.+..=+.++ +.. .+.+++.++.+|- + .+++-+++...++.+.. ++||.+.=.+.+..++..
T Consensus 180 aN~~~~~~~-a~~-~~~l~~~~~~~iE----e------------P~~~~~~~~~~~l~~~~-~~pia~dEs~~~~~~~~~ 240 (324)
T TIGR01928 180 ANESYDLQD-FPR-LKELDRYQLLYIE----E------------PFKIDDLSMLDELAKGT-ITPICLDESITSLDDARN 240 (324)
T ss_pred CCCCCCHHH-HHH-HHHHhhCCCcEEE----C------------CCChhHHHHHHHHHhhc-CCCEeeCCCcCCHHHHHH
Confidence 221112223 233 3556667766654 1 12222356666776654 899988888999999999
Q ss_pred HHHc-CCCeee
Q 013789 285 ALRK-GAHHVM 294 (436)
Q Consensus 285 ~l~~-Gad~Vm 294 (436)
+++. .+|.++
T Consensus 241 ~~~~~~~dvi~ 251 (324)
T TIGR01928 241 LIELGNVKVIN 251 (324)
T ss_pred HHHcCCCCEEE
Confidence 9984 477775
No 404
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=89.30 E-value=22 Score=37.42 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=106.6
Q ss_pred CCCCCChHHHHHHHH--HcCCCcEEE-eccccchhhhhcccchhhhh----cc-CCC--CCcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDRFL----AF-SPE--QHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~~--~~Gg~gl~~-temv~~~~l~~~~~~~~~~~----~~-~~~--~~pi~vQL~g~~p~~~~~aA~ 144 (436)
|-.|.+..++..++. ..||++++= -|-+.......-.+.+.... +. .++ ..-..+||.+ +++++.+-++
T Consensus 169 PklGLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~em~~ra~ 247 (424)
T cd08208 169 PNIGLPPGEFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-EVDRLMELHD 247 (424)
T ss_pred ccccCCHHHHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHH
Confidence 667899999999874 457777541 12221111111011111111 11 112 2347799998 6999999999
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCC----C-cHHHHHHHHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----D-SYNQLCDFIY 219 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~----~-~~~~~~~~la 219 (436)
++.++|.+.+-+|.. . +| ...++.+++..++||-. .|.++-.. . -+.- ..+.
T Consensus 248 ~a~~~G~~~vmv~~~-----~-----~G----------~~al~~L~~~~~l~iha-Hra~~ga~~r~~~~Gis~--~vl~ 304 (424)
T cd08208 248 VAVRNGANALLINAM-----P-----VG----------LSAVRMLRKHAQVPLIA-HFPFIASFSRLEKYGIHS--RVMT 304 (424)
T ss_pred HHHHhCCCEEEEeee-----c-----cc----------HHHHHHHHhcCCCeEEe-ccCccccccCCCCCCCcH--HHHH
Confidence 999999987777631 1 13 12344555556777643 34333210 0 1111 1246
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-------C-CcEEEEeCCCCCHHHHHHHHH-cC-
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-------P-DLTFTLNGGINTVDEVNAALR-KG- 289 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-------~-~iPVIanGgI~s~~da~~~l~-~G- 289 (436)
+++.-+|+|.+++.+- .|. ... . .+.+.+..+.. . -+|| .+||+ ++..+.+.++ .|
T Consensus 305 Kl~RLaGaD~ih~~~~----gg~---~~~--~---~~~~~~~~~~~~~~~~~~k~~~Pv-~SGG~-~~~~~p~~~~~~G~ 370 (424)
T cd08208 305 KLQRLAGLDVVIMPGF----GPR---MMT--P---EEEVLECVIACLEPMGPIKPCLPV-PGGSD-SALTLQTVYEKVGN 370 (424)
T ss_pred HHHHHcCCCeeeccCC----CCC---ccc--h---HHHHHHHHHHHhCcccCCCCceEe-cccCC-CHhHHHHHHHHhCC
Confidence 7777799999987321 111 000 0 12222222111 1 2444 56777 6777888887 89
Q ss_pred CCee-eehHHHHhCCcc
Q 013789 290 AHHV-MVGRAAYQNPWY 305 (436)
Q Consensus 290 ad~V-miGRa~l~~P~l 305 (436)
.|.| ++|-|.++.||=
T Consensus 371 ~Dvil~~GGGi~gHP~G 387 (424)
T cd08208 371 VDFGFVPGRGVFGHPMG 387 (424)
T ss_pred CCEEEecCccccCCCCC
Confidence 5877 889999999995
No 405
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=89.24 E-value=12 Score=37.58 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHH
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 281 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~d 281 (436)
+..++.|+|++.+.=.|. .|.-.. ...+.++|+.+.++.+.. ++|++.-||=..+++
T Consensus 162 ~Fv~~TgvD~LAvaiGt~--HG~Yk~--~~~p~L~f~~L~~I~~~~-~iPLVLHGgSGip~e 218 (307)
T PRK05835 162 QFVKESQVDYLAPAIGTS--HGAFKF--KGEPKLDFERLQEVKRLT-NIPLVLHGASAIPDD 218 (307)
T ss_pred HHHHhhCCCEEEEccCcc--ccccCC--CCCCccCHHHHHHHHHHh-CCCEEEeCCCCCchH
Confidence 345679999998754333 121100 012457799999987775 999999998888874
No 406
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=89.24 E-value=25 Score=34.92 Aligned_cols=200 Identities=15% Similarity=0.101 Sum_probs=109.3
Q ss_pred EEEcCCC---CCChHHHHHHHH---HcCCCcEEEeccccchhhhhcccc---hhhhhccCCCCCcEEEEEcCCCHHHHHH
Q 013789 71 FSVAPMM---DWTDNHYRTLAR---LISKHAWLYTEMLAAETIIYQQGN---LDRFLAFSPEQHPIVLQIGGSNLDNLAK 141 (436)
Q Consensus 71 iilAPMa---gvtd~~fr~~~~---~~Gg~gl~~temv~~~~l~~~~~~---~~~~~~~~~~~~pi~vQL~g~~p~~~~~ 141 (436)
.++.|+. .+....+|+++. ..|-.|+++.+...--......++ ++...+......|+++++.+ +.++-.+
T Consensus 12 a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~ 90 (296)
T TIGR03249 12 FPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIE 90 (296)
T ss_pred eeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHH
Confidence 4556663 366677888863 344344554443221111111111 12222334456799999975 6888889
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 221 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~ 221 (436)
.++.+++.|+|++-+- .|... . ...+-+.+-.++|.+++++||.+=-+.|.+- +.+. +.++
T Consensus 91 ~a~~a~~~Gadav~~~--pP~y~-------~----~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l--~~~~----~~~L 151 (296)
T TIGR03249 91 IARLAEKAGADGYLLL--PPYLI-------N----GEQEGLYAHVEAVCESTDLGVIVYQRDNAVL--NADT----LERL 151 (296)
T ss_pred HHHHHHHhCCCEEEEC--CCCCC-------C----CCHHHHHHHHHHHHhccCCCEEEEeCCCCCC--CHHH----HHHH
Confidence 9999999999998763 34321 1 2346677788888888899988766666432 2322 2334
Q ss_pred hhc-CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeC-CCCCHHHHHHHHHcCCCeeeehHH
Q 013789 222 SSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNG-GINTVDEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 222 ~e~-~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanG-gI~s~~da~~~l~~Gad~VmiGRa 298 (436)
+++ -.+.+|--.. | +...+.++.+... ++ .|.+| |..+ ..+...+..|++|++.|-+
T Consensus 152 a~~~~nvvgiKds~------~------------d~~~~~~~~~~~~~~~-~v~~G~~~~d-~~~~~~~~~Ga~G~is~~~ 211 (296)
T TIGR03249 152 ADRCPNLVGFKDGI------G------------DMEQMIEITQRLGDRL-GYLGGMPTAE-VTAPAYLPLGVTSYSSAIF 211 (296)
T ss_pred HhhCCCEEEEEeCC------C------------CHHHHHHHHHHcCCCe-EEEeCCCcch-hhHHHHHhCCCCEEEecHH
Confidence 432 2333333211 1 1444445544432 34 34444 2222 3345566689999998866
Q ss_pred HHhCCcchhhhhh
Q 013789 299 AYQNPWYTLGHVD 311 (436)
Q Consensus 299 ~l~~P~lf~~~~~ 311 (436)
-+ .|.++.+.++
T Consensus 212 n~-~P~~~~~~~~ 223 (296)
T TIGR03249 212 NF-IPHIARAFYE 223 (296)
T ss_pred Hh-hHHHHHHHHH
Confidence 43 4555443333
No 407
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.09 E-value=4.7 Score=40.14 Aligned_cols=73 Identities=8% Similarity=0.019 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHH
Q 013789 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR 287 (436)
Q Consensus 209 ~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~ 287 (436)
++.+++.+. + ++|+|.|-+-.-+ .+.+.+.++.. .++.+.++||| +.+.+.+..+
T Consensus 205 ~tleea~~a----~-~agaDiImLDnms------------------pe~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~ 260 (290)
T PRK06559 205 ESLAAAEEA----A-AAGADIIMLDNMS------------------LEQIEQAITLIAGRSRIECSGNI-DMTTISRFRG 260 (290)
T ss_pred CCHHHHHHH----H-HcCCCEEEECCCC------------------HHHHHHHHHHhcCceEEEEECCC-CHHHHHHHHh
Confidence 345555442 2 5899998874321 22233333321 26789999999 7899999999
Q ss_pred cCCCeeeehHHHHhCCcc
Q 013789 288 KGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 288 ~Gad~VmiGRa~l~~P~l 305 (436)
+|+|.+.+|.-...-|++
T Consensus 261 tGVD~Is~galthsa~~~ 278 (290)
T PRK06559 261 LAIDYVSSGSLTHSAKSL 278 (290)
T ss_pred cCCCEEEeCccccCCccc
Confidence 999999999966655654
No 408
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=89.07 E-value=4.4 Score=40.46 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=58.6
Q ss_pred HHHHHHHhhcc-CCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHH
Q 013789 183 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261 (436)
Q Consensus 183 ~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l 261 (436)
.+.++.+++.. ..+|.|-+ ++.+++.+. + ++|+|.|-+-.-+ .+.+.++
T Consensus 196 ~~av~~~r~~~~~~kIeVEv-------~sleea~ea----~-~~gaDiI~LDn~s------------------~e~~~~a 245 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEV-------ENLDELDQA----L-KAGADIIMLDNFT------------------TEQMREA 245 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEe-------CCHHHHHHH----H-HcCCCEEEeCCCC------------------hHHHHHH
Confidence 34444444432 34555433 345555442 2 4899988864221 2223333
Q ss_pred HhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 262 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 262 ~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
++.. .++.+.++||| +.+.+.+..++|+|.+.+|.-...-||+
T Consensus 246 v~~~~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galthsa~~l 289 (296)
T PRK09016 246 VKRTNGRALLEVSGNV-TLETLREFAETGVDFISVGALTKHVQAL 289 (296)
T ss_pred HHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCCCcc
Confidence 3322 27889999999 7899999999999999999977766775
No 409
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=89.03 E-value=13 Score=37.76 Aligned_cols=130 Identities=13% Similarity=0.148 Sum_probs=77.1
Q ss_pred CcEEEEEcCCCH-HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc
Q 013789 125 HPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (436)
Q Consensus 125 ~pi~vQL~g~~p-~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~ 203 (436)
.|+...+...++ +++.+.++.+.+.||..+-+..+ | +.-.+.+++|++.++ .+++++
T Consensus 126 v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~-~------------------~~d~~~l~~vr~~~g---~~~l~l 183 (354)
T cd03317 126 IPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-P------------------GWDVEPLKAVRERFP---DIPLMA 183 (354)
T ss_pred EEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC-h------------------HHHHHHHHHHHHHCC---CCeEEE
Confidence 344444443443 77777777777789999877643 0 112355677777654 344444
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~ 283 (436)
..+..=+..+. .+ .+.+++.++.+|- + .+++.+++...++.+.. .+||.+.=.+.+.+++.
T Consensus 184 DaN~~~~~~~a-~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~~pia~dEs~~~~~~~~ 244 (354)
T cd03317 184 DANSAYTLADI-PL-LKRLDEYGLLMIE----Q------------PLAADDLIDHAELQKLL-KTPICLDESIQSAEDAR 244 (354)
T ss_pred ECCCCCCHHHH-HH-HHHhhcCCccEEE----C------------CCChhHHHHHHHHHhhc-CCCEEeCCccCCHHHHH
Confidence 22221122332 33 3456666665554 1 12233355566666654 89998877889999999
Q ss_pred HHHHcC-CCeeee
Q 013789 284 AALRKG-AHHVMV 295 (436)
Q Consensus 284 ~~l~~G-ad~Vmi 295 (436)
++++.| +|.+++
T Consensus 245 ~~~~~~~~d~~~i 257 (354)
T cd03317 245 KAIELGACKIINI 257 (354)
T ss_pred HHHHcCCCCEEEe
Confidence 999854 687764
No 410
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=88.80 E-value=11 Score=39.17 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=88.9
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
+++++.+ .++|++..+. |-+|+.+++.+..+..-|.|.|-=.-+...... +-+.++.+.+.+.++..
T Consensus 115 ~R~~lgv--~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~-------~p~~eRv~a~~~a~~~a 185 (391)
T cd08209 115 IRQRLGV--HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPL-------APALERIRACRPVLQEV 185 (391)
T ss_pred HHHHhCC--CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC-------CCHHHHHHHHHHHHHHH
Confidence 4455443 6799999986 668999999999888889887632211111100 01113334444444444
Q ss_pred hhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCc
Q 013789 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDL 268 (436)
Q Consensus 190 ~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~i 268 (436)
.+.+|.....- .+++. +.+++.+.. +.+.+.|++++-+..-+. | |..+..+.++. .++
T Consensus 186 ~~eTG~~~~ya--~NiT~--~~~em~~ra-~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~l 244 (391)
T cd08209 186 YEQTGRRTLYA--VNLTG--PVFTLKEKA-RRLVEAGANALLFNVFAY---G-------------LDVLEALASDPEINV 244 (391)
T ss_pred HHhhCCcceEE--EEcCC--CHHHHHHHH-HHHHHhCCCEEEEecccc---c-------------hHHHHHHHhcCcCCc
Confidence 44566543221 22222 345666653 444569999887754332 2 55556666631 267
Q ss_pred EEEE----eC--------CCCCHHHHHHHHH-cCCCeeeehHH
Q 013789 269 TFTL----NG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 269 PVIa----nG--------gI~s~~da~~~l~-~Gad~VmiGRa 298 (436)
||.+ .| ||....-..++.+ .|||.+.+++.
T Consensus 245 pIhaHra~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 245 PIFAHPAFAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred EEEecCCcccccccCCCCCCcHHHHHHHHHHHcCCCccccCCc
Confidence 8873 23 4433344556666 89999998885
No 411
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.66 E-value=4.2 Score=41.23 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=61.3
Q ss_pred CCCCcEEEEEc-------CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC
Q 013789 122 PEQHPIVLQIG-------GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 194 (436)
Q Consensus 122 ~~~~pi~vQL~-------g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~ 194 (436)
..+-++.+=+. |.++++..+.++.++++|+|.|+++.|........ +..-......+..-.+..+.++++++
T Consensus 214 G~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ik~~v~ 292 (338)
T cd04733 214 GPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMA-GAKKESTIAREAYFLEFAEKIRKVTK 292 (338)
T ss_pred CCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCcccc-ccccCCccccchhhHHHHHHHHHHcC
Confidence 34557777664 56788888999999999999999998864322110 00000011122233566777888889
Q ss_pred CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccC
Q 013789 195 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (436)
Q Consensus 195 iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgr 235 (436)
+||.+--++ .+.++. .+++++.++|.|.+ ||
T Consensus 293 iPVi~~G~i-----~t~~~a----~~~l~~g~aD~V~l-gR 323 (338)
T cd04733 293 TPLMVTGGF-----RTRAAM----EQALASGAVDGIGL-AR 323 (338)
T ss_pred CCEEEeCCC-----CCHHHH----HHHHHcCCCCeeee-Ch
Confidence 998774332 233333 33455666887655 44
No 412
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=88.51 E-value=15 Score=35.74 Aligned_cols=125 Identities=8% Similarity=0.033 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHH
Q 013789 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216 (436)
Q Consensus 137 ~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~ 216 (436)
+.+.+-++.+.++|+|+|-+.+--|.. . -|.+.+.+++++. -++|++.-... |...+..+..
T Consensus 73 ~~M~~di~~~~~~GadGvV~G~L~~dg------~------vD~~~~~~Li~~a---~~~~vTFHRAf--D~~~d~~~al- 134 (248)
T PRK11572 73 AAMLEDIATVRELGFPGLVTGVLDVDG------H------VDMPRMRKIMAAA---GPLAVTFHRAF--DMCANPLNAL- 134 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeECCCC------C------cCHHHHHHHHHHh---cCCceEEechh--hccCCHHHHH-
Confidence 445566678889999998776543332 2 4667777777765 25777665443 3322222222
Q ss_pred HHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeee
Q 013789 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (436)
Q Consensus 217 ~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~Vmi 295 (436)
. .+.+.|++.|--||... .+ ....+.+.++++...+.-|++-||| +.+.+.+..++|+..|=.
T Consensus 135 --~-~l~~lG~~rILTSGg~~------~a------~~g~~~L~~lv~~a~~~~Im~GgGV-~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 135 --K-QLADLGVARILTSGQQQ------DA------EQGLSLIMELIAASDGPIIMAGAGV-RLSNLHKFLDAGVREVHS 197 (248)
T ss_pred --H-HHHHcCCCEEECCCCCC------CH------HHHHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHHHcCCCEEee
Confidence 2 23357999998776542 11 0125666777765544447888888 578888877799887754
No 413
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=88.32 E-value=41 Score=36.99 Aligned_cols=281 Identities=14% Similarity=0.131 Sum_probs=135.9
Q ss_pred EEcCCC-CCChHHHHHHHHHcCCCcEEEecccc----chhhhh--ccc--chhhhhccCCCCCcEEE-----EEcC--CC
Q 013789 72 SVAPMM-DWTDNHYRTLARLISKHAWLYTEMLA----AETIIY--QQG--NLDRFLAFSPEQHPIVL-----QIGG--SN 135 (436)
Q Consensus 72 ilAPMa-gvtd~~fr~~~~~~Gg~gl~~temv~----~~~l~~--~~~--~~~~~~~~~~~~~pi~v-----QL~g--~~ 135 (436)
-|+|++ .++...+..++..+-.+|+-.-|+-. ...+.. ..+ .++.+.+.-+ +.++.. |+.| +-
T Consensus 16 ~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~-~~~lqml~Rg~n~vg~~~y 94 (593)
T PRK14040 16 HQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMP-NTPQQMLLRGQNLLGYRHY 94 (593)
T ss_pred cccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCC-CCeEEEEecCcceeccccC
Confidence 577764 67888877776444334444444421 111111 111 1222222222 233321 2222 22
Q ss_pred HHHH-HHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHH
Q 013789 136 LDNL-AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 214 (436)
Q Consensus 136 p~~~-~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~ 214 (436)
|++. ....+.+.+.|.|.|-+-. + +++.+.+...++.+++. |.-+.+-+..-.....+.+.+
T Consensus 95 pddvv~~~v~~a~~~Gid~~rifd--~--------------lnd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~ 157 (593)
T PRK14040 95 ADDVVERFVERAVKNGMDVFRVFD--A--------------MNDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTW 157 (593)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEee--e--------------CCcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHH
Confidence 4543 4456677889999876652 1 14456677778877764 443222222111122344445
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH---HHHHHHHHcCCC
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV---DEVNAALRKGAH 291 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~---~da~~~l~~Gad 291 (436)
.+. ++.++++|+|.|.+---. |... |..-.+++..+++.+ ++||-.-+==..+ ....++++.|||
T Consensus 158 ~~~-a~~l~~~Gad~i~i~Dt~----G~l~------P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~ 225 (593)
T PRK14040 158 VDL-AKQLEDMGVDSLCIKDMA----GLLK------PYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGID 225 (593)
T ss_pred HHH-HHHHHHcCCCEEEECCCC----CCcC------HHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCC
Confidence 553 445667999999885322 2211 112256677776665 7888655433333 334455568998
Q ss_pred eeee-----hHHHHhCCcchhhhhhhhh-cCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCC
Q 013789 292 HVMV-----GRAAYQNPWYTLGHVDTAI-YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 365 (436)
Q Consensus 292 ~Vmi-----GRa~l~~P~lf~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~y~~~~~g 365 (436)
.|.. |.++ +||.+ ..-+.... .+..+ ..+. +.+....+|...+...|..-.+.... -.-.-|.|.+||
T Consensus 226 ~vD~ai~glG~~~-Gn~~l-e~vv~~L~~~~~~~-gidl-~~l~~is~~~~~v~~~Y~~~~~~~~~--~~~~v~~~e~PG 299 (593)
T PRK14040 226 GVDTAISSMSMTY-GHSAT-ETLVATLEGTERDT-GLDI-LKLEEIAAYFREVRKKYAKFEGQLKG--VDSRILVAQVPG 299 (593)
T ss_pred EEEeccccccccc-cchhH-HHHHHHHHhcCCCc-CCCH-HHHHHHHHHHHHHHHHhccCCccccc--CcccEEEEcCCC
Confidence 8764 4433 66665 22222111 12111 1222 33444455555555555421111100 011235778899
Q ss_pred C--hHHHHHHHHHHHhhhhHHHHHHH
Q 013789 366 N--GLFKRKADAAFQTCKTVKSFLEE 389 (436)
Q Consensus 366 ~--~~~r~~l~~~~~~~~~~~~~l~~ 389 (436)
. +.+..++.+ +.-...+.+++++
T Consensus 300 G~~Snl~~ql~~-~g~~~~~~evl~e 324 (593)
T PRK14040 300 GMLTNMESQLKE-QGAADKLDEVLAE 324 (593)
T ss_pred chHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 8 788777743 2333345555554
No 414
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=88.16 E-value=15 Score=38.92 Aligned_cols=174 Identities=10% Similarity=0.157 Sum_probs=94.0
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccc--cchhhhhcccchhhhhccCCCCCcEEEEEc-CCCHHHHHHHHHHHHHCCCC
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GSNLDNLAKATELANAYNYD 152 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv--~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~-g~~p~~~~~aA~~~~~~G~d 152 (436)
.+|.|+..-..++.++| ++.+.--+. ++..+. ......+.+..+ -. .|=+| ..+++. ..++++++++|
T Consensus 261 ICGit~~eda~~a~~~G-aD~lGfIf~~~SpR~V~--~~~a~~i~~~l~-v~--~VgVfv~~~~~~---i~~i~~~~~lD 331 (454)
T PRK09427 261 VCGLTRPQDAKAAYDAG-AVYGGLIFVEKSPRYVS--LEQAQEIIAAAP-LR--YVGVFRNADIED---IVDIAKQLSLA 331 (454)
T ss_pred cCCCCCHHHHHHHHhCC-CCEEeeEeCCCCCCCCC--HHHHHHHHHhCC-CC--EEEEEeCCCHHH---HHHHHHHcCCC
Confidence 47999999988888886 554432111 222121 111223332222 22 24445 344554 44567788999
Q ss_pred EEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE
Q 013789 153 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 232 (436)
Q Consensus 153 ~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v 232 (436)
.|+||.- ..++++.++.+.. ..++++.--++.. +.. +. . +..++|++-+
T Consensus 332 ~vQLHG~-----------------e~~~~~~~l~~~~--~~~~~iikai~v~--~~~---~~----~---~~~~~d~~Ll 380 (454)
T PRK09427 332 AVQLHGD-----------------EDQAYIDALREAL--PKTCQIWKAISVG--DTL---PA----R---DLQHVDRYLL 380 (454)
T ss_pred EEEeCCC-----------------CCHHHHHHHHhhc--CCCCeEEEEeecC--chh---hh----h---hhcCCCEEEE
Confidence 9999841 2344444332221 1123443333332 111 11 1 1245888888
Q ss_pred ccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 233 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 233 hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
... .+|.+- +.+|..+.. ....|++.+||| +++.+.+++..+..||=+.+|.-..|-
T Consensus 381 Ds~---~GGtG~-------~~DW~~l~~----~~~~p~iLAGGL-~peNV~~ai~~~P~gVDVsSGVE~~pG 437 (454)
T PRK09427 381 DNG---QGGTGQ-------TFDWSLLPG----QSLDNVLLAGGL-NPDNCQQAAQLGCAGLDFNSGVESAPG 437 (454)
T ss_pred cCC---CCCCCC-------ccChHHhhh----cccCCEEEECCC-CHHHHHHHHhcCCCEEEeCCcccCCCC
Confidence 752 233321 223654432 125799999999 788888887778888888888765554
No 415
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=88.08 E-value=9 Score=36.26 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=78.6
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~-G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR 202 (436)
++++.+|+.+.+.+.+.+.|+.+.+. |--.|.| |... . -.+.++.+++. |+++.+-
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~-----~-----------gl~ai~~L~~~-gi~v~~T-- 107 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE-----D-----------GLKAIKKLSEE-GIKTNVT-- 107 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH-----h-----------HHHHHHHHHHc-CCceeeE--
Confidence 57899999999999999999888775 3223332 2211 1 13344444333 5444331
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcCCccEEEEc-cCcccccCCCCCCCCCCCCccHHHHHHH---HhcCCCc-EEEEeCCCC
Q 013789 203 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYAL---LRDFPDL-TFTLNGGIN 277 (436)
Q Consensus 203 ~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vh-grt~~~~G~~~~~~~~i~~~~~~~v~~l---~~~~~~i-PVIanGgI~ 277 (436)
..-+..+. .++.++|+++|... ||-... |. .+ .+.+.++ .+.. ++ .=|...+++
T Consensus 108 ----~V~s~~Qa-----~~Aa~AGA~yvsP~vgR~~~~-g~--------dg--~~~i~~i~~~~~~~-~~~tkil~As~r 166 (211)
T cd00956 108 ----AIFSAAQA-----LLAAKAGATYVSPFVGRIDDL-GG--------DG--MELIREIRTIFDNY-GFDTKILAASIR 166 (211)
T ss_pred ----EecCHHHH-----HHHHHcCCCEEEEecChHhhc-CC--------CH--HHHHHHHHHHHHHc-CCCceEEecccC
Confidence 11123332 23346899998775 553321 11 11 4444433 3333 32 246677899
Q ss_pred CHHHHHHHHHcCCCeeeehHHHH
Q 013789 278 TVDEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 278 s~~da~~~l~~Gad~VmiGRa~l 300 (436)
++.++.++...|||.|-+.-.++
T Consensus 167 ~~~ei~~a~~~Gad~vTv~~~vl 189 (211)
T cd00956 167 NPQHVIEAALAGADAITLPPDVL 189 (211)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHH
Confidence 99999999999999998875443
No 416
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=88.03 E-value=20 Score=36.51 Aligned_cols=134 Identities=10% Similarity=0.044 Sum_probs=76.6
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G-~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~ 203 (436)
-|+...+...++++..+.++...+.| |..+.+..|- .+++.-.+.++++++.++--+ ++++
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~----------------~~~~~d~~~v~avr~~~g~~~--~l~i 193 (365)
T cd03318 132 LPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA----------------RPPADDLAHVEAIAKALGDRA--SVRV 193 (365)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC----------------CChHHHHHHHHHHHHHcCCCc--EEEE
Confidence 34544454556555555444455668 9988776441 123334566777777765222 3333
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~ 283 (436)
..+..=+..+..++ .+.+++.++.+|- + .+++.+++.+.++.+.. .+||.+.=.+.+.+++.
T Consensus 194 DaN~~~~~~~A~~~-~~~l~~~~~~~iE----e------------P~~~~~~~~~~~l~~~~-~~pia~dE~~~~~~~~~ 255 (365)
T cd03318 194 DVNQAWDESTAIRA-LPRLEAAGVELIE----Q------------PVPRENLDGLARLRSRN-RVPIMADESVSGPADAF 255 (365)
T ss_pred ECCCCCCHHHHHHH-HHHHHhcCcceee----C------------CCCcccHHHHHHHHhhc-CCCEEcCcccCCHHHHH
Confidence 21111123344443 3455667765543 1 12222366666776664 89988766788999999
Q ss_pred HHHHc-CCCeee
Q 013789 284 AALRK-GAHHVM 294 (436)
Q Consensus 284 ~~l~~-Gad~Vm 294 (436)
++++. .+|.++
T Consensus 256 ~~i~~~~~d~~~ 267 (365)
T cd03318 256 ELARRGAADVFS 267 (365)
T ss_pred HHHHhCCCCeEE
Confidence 99985 467775
No 417
>PRK06256 biotin synthase; Validated
Probab=87.99 E-value=7.7 Score=39.09 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=77.4
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
+.++.++++|++.+.+|.-. +..+.++=+ . -...+...+.++.+++ .|+++..-+=.|.. ++.++..+.+ .
T Consensus 153 e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~--~--~~t~~~~i~~i~~a~~-~Gi~v~~~~I~Glg--Et~ed~~~~~-~ 223 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNLET-SRSYFPNVV--T--THTYEDRIDTCEMVKA-AGIEPCSGGIIGMG--ESLEDRVEHA-F 223 (336)
T ss_pred HHHHHHHHhCCCEEecCCcc-CHHHHhhcC--C--CCCHHHHHHHHHHHHH-cCCeeccCeEEeCC--CCHHHHHHHH-H
Confidence 34566888999998887655 433222111 0 0344555566666554 47776555555552 4555666544 3
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHH--HHh-cCCCcEEEEeCCC-CCHHHHH-HHHHcCCCeeee
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA--LLR-DFPDLTFTLNGGI-NTVDEVN-AALRKGAHHVMV 295 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~--l~~-~~~~iPVIanGgI-~s~~da~-~~l~~Gad~Vmi 295 (436)
.+.+.|++.+.++.-... .|..-.+...+++ .+++.. +.+ ..++..|..+||= ....+.+ .++ .||+++|+
T Consensus 224 ~l~~l~~~~v~i~~l~P~-pGT~l~~~~~~~~--~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~ 299 (336)
T PRK06256 224 FLKELDADSIPINFLNPI-PGTPLENHPELTP--LECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIV 299 (336)
T ss_pred HHHhCCCCEEeecccccC-CCCCCCCCCCCCH--HHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeE
Confidence 556789999888744321 2221111111222 333221 222 2467777666664 3344443 344 69999999
Q ss_pred hHH
Q 013789 296 GRA 298 (436)
Q Consensus 296 GRa 298 (436)
|==
T Consensus 300 g~~ 302 (336)
T PRK06256 300 GNY 302 (336)
T ss_pred CCc
Confidence 854
No 418
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=87.77 E-value=9.5 Score=35.41 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=72.2
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-C--CcEEEEecc
Q 013789 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-N--VPVSVKCRI 203 (436)
Q Consensus 127 i~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~--iPvsvKiR~ 203 (436)
+++-|=+.++++..+.++.+ +.|++.|++.. |.. . .+| .++++.+++.. + +.+.+|+.
T Consensus 2 l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~--~l~--~---~~g----------~~~i~~l~~~~~~~~i~~d~k~~- 62 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKV-ADYVDIIEIGT--PLI--K---NEG----------IEAVKEMKEAFPDRKVLADLKTM- 62 (206)
T ss_pred eEEEecCCCHHHHHHHHHHc-ccCeeEEEeCC--HHH--H---HhC----------HHHHHHHHHHCCCCEEEEEEeec-
Confidence 34445567788888888877 67889998842 111 1 112 34555555542 3 33344433
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe-CCCCC-HHH
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINT-VDE 281 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan-GgI~s-~~d 281 (436)
+.+++ + .+.+.++|+|+|++|+-.. +.....+.+..++. +++++.. =+..+ .++
T Consensus 63 ---d~~~~-~-----~~~~~~~Gad~i~vh~~~~--------------~~~~~~~i~~~~~~-g~~~~~~~~~~~t~~~~ 118 (206)
T TIGR03128 63 ---DAGEY-E-----AEQAFAAGADIVTVLGVAD--------------DATIKGAVKAAKKH-GKEVQVDLINVKDKVKR 118 (206)
T ss_pred ---cchHH-H-----HHHHHHcCCCEEEEeccCC--------------HHHHHHHHHHHHHc-CCEEEEEecCCCChHHH
Confidence 22221 1 1223469999999996431 00012222334444 7888764 24444 478
Q ss_pred HHHHHHcCCCeeeehH
Q 013789 282 VNAALRKGAHHVMVGR 297 (436)
Q Consensus 282 a~~~l~~Gad~VmiGR 297 (436)
+..+.+.|+|.|.+..
T Consensus 119 ~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 119 AKELKELGADYIGVHT 134 (206)
T ss_pred HHHHHHcCCCEEEEcC
Confidence 8888888999998743
No 419
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=87.62 E-value=10 Score=36.60 Aligned_cols=83 Identities=11% Similarity=0.128 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCC-----CCcH
Q 013789 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HDSY 211 (436)
Q Consensus 137 ~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~-----~~~~ 211 (436)
..+.+..+.+.+.|||.|||+-|.=.- ..+...++++.+++. + +.||--.|..+ ..+.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~i--------------~~~~~~rlI~~~~~~-g--~~v~~EvG~K~~~~~~~~~~ 133 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSMEI--------------SLEERCNLIERAKDN-G--FMVLSEVGKKSPEKDSELTP 133 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccCC--------------CHHHHHHHHHHHHhC-C--CeEeccccccCCcccccCCH
Confidence 345556678889999999999764321 223345555555542 1 22222222222 1234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCcc
Q 013789 212 NQLCDFIYKVSSLSPTRHFIIHSRKA 237 (436)
Q Consensus 212 ~~~~~~la~~~e~~Gvd~I~vhgrt~ 237 (436)
.+..+.+.+-++ +|++.|++-+|+.
T Consensus 134 ~~~i~~~~~~Le-AGA~~ViiEarEs 158 (237)
T TIGR03849 134 DDRIKLINKDLE-AGADYVIIEGRES 158 (237)
T ss_pred HHHHHHHHHHHH-CCCcEEEEeehhc
Confidence 555555555564 9999999999986
No 420
>PLN02363 phosphoribosylanthranilate isomerase
Probab=87.58 E-value=30 Score=33.87 Aligned_cols=182 Identities=10% Similarity=0.082 Sum_probs=92.9
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccc--cchhhhhcccchhhhhccCCCCCcEEEEEcC-CCHHHHHHHHHHHHHCCCC
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNLDNLAKATELANAYNYD 152 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv--~~~~l~~~~~~~~~~~~~~~~~~pi~vQL~g-~~p~~~~~aA~~~~~~G~d 152 (436)
.+|.|+..=..++.++| ++.+.--+. ++..+. .+....+.+.-+....--|=+|. .+++ +..++++++|+|
T Consensus 51 ICGit~~eda~~a~~~G-aD~iGfIf~~~SpR~Vs--~e~a~~I~~~l~~~~~~~VgVfv~~~~~---~I~~~~~~~~ld 124 (256)
T PLN02363 51 MCGITSARDAAMAVEAG-ADFIGMILWPKSKRSIS--LSVAKEISQVAREGGAKPVGVFVDDDAN---TILRAADSSDLE 124 (256)
T ss_pred ECCCCcHHHHHHHHHcC-CCEEEEecCCCCCCcCC--HHHHHHHHHhccccCccEEEEEeCCCHH---HHHHHHHhcCCC
Confidence 46999999888888885 654432111 111111 11122332211111111244453 4455 445667788999
Q ss_pred EEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEE
Q 013789 153 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 232 (436)
Q Consensus 153 ~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~v 232 (436)
.|+||.. .+++.+.+ ++.. +++.--++.. +. .+..+.+.. .....+|++.+
T Consensus 125 ~VQLHG~-----------------e~~~~~~~----l~~~--~~iikai~v~--~~---~~~~~~~~~-~~~~~~D~~Ll 175 (256)
T PLN02363 125 LVQLHGN-----------------GSRAAFSR----LVRE--RKVIYVLNAN--ED---GKLLNVVPE-EDCHLADWILV 175 (256)
T ss_pred EEEECCC-----------------CCHHHHHH----hhcC--CcEEEEEEEC--ch---HHHHHHHHh-hccccCCEEEE
Confidence 9999831 22333333 2222 4443333432 11 111111111 11234788877
Q ss_pred ccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCCc
Q 013789 233 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 233 hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 304 (436)
-... +|.+- +.+|..+... ......|+|.+||| +++.+.++++ .+..+|=+-+|.-..|-
T Consensus 176 Ds~~---GGtG~-------t~DW~~l~~~-~~~~~~p~iLAGGL-~peNV~~ai~~~~P~GVDVsSGVE~~pG 236 (256)
T PLN02363 176 DSAT---GGSGK-------GFNWQNFKLP-SVRSRNGWLLAGGL-TPENVHEAVSLLKPTGVDVSSGICGPDG 236 (256)
T ss_pred eCCC---CCCCC-------ccCHHHhccc-ccccCCCEEEECCC-CHHHHHHHHHhcCCcEEEeCCcccCCCC
Confidence 6432 23221 1125443210 10124689999999 7899999987 78888888888766554
No 421
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=87.58 E-value=6.4 Score=37.11 Aligned_cols=128 Identities=17% Similarity=0.173 Sum_probs=67.5
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCC----CCcHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCDF 217 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~----~~~~~~~~~~ 217 (436)
.+..+++.|+|-|||+..-- .| | |--.. ..++.+++..++||-|-||+---+ ..+.+.+.+-
T Consensus 12 ~a~~A~~~GAdRiELc~~l~------~G--G--lTPS~----g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~d 77 (201)
T PF03932_consen 12 DALAAEAGGADRIELCSNLE------VG--G--LTPSL----GLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKED 77 (201)
T ss_dssp HHHHHHHTT-SEEEEEBTGG------GT-----B---H----HHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCcc------CC--C--cCcCH----HHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHH
Confidence 45566789999999985211 12 1 22222 344455557789999999872211 1234445554
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCC---CCCHHHHHHHH-HcCCCee
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG---INTVDEVNAAL-RKGAHHV 293 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGg---I~s~~da~~~l-~~Gad~V 293 (436)
+. .+.+.|+|.+.+=.-+. + ..++.+.+.++++.....|+...=- +.|+..+.+.+ +.|++.|
T Consensus 78 I~-~~~~~GadG~VfG~L~~--------d----g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 78 IR-MLRELGADGFVFGALTE--------D----GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRV 144 (201)
T ss_dssp HH-HHHHTT-SEEEE--BET--------T----SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEE
T ss_pred HH-HHHHcCCCeeEEEeECC--------C----CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEE
Confidence 43 45669999998732221 1 1245667777766555778877643 34455555444 3788888
Q ss_pred eeh
Q 013789 294 MVG 296 (436)
Q Consensus 294 miG 296 (436)
.-.
T Consensus 145 LTS 147 (201)
T PF03932_consen 145 LTS 147 (201)
T ss_dssp EES
T ss_pred ECC
Confidence 643
No 422
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=87.56 E-value=15 Score=34.66 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=71.5
Q ss_pred EEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCC
Q 013789 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD 207 (436)
Q Consensus 128 ~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~ 207 (436)
-++++|-... +-|+.+.++|+|.+=+.+...++. . -.++.+.++.+.+.... .+|.|- .
T Consensus 4 ~vKICGi~~~---eda~~~~~~Gad~iGfI~~~~S~R-----~------V~~~~a~~i~~~~~~~i-~~VgVf------~ 62 (210)
T PRK01222 4 RVKICGITTP---EDAEAAAELGADAIGFVFYPKSPR-----Y------VSPEQAAELAAALPPFV-KVVGVF------V 62 (210)
T ss_pred eEEECCCCcH---HHHHHHHHcCCCEEEEccCCCCCC-----c------CCHHHHHHHHHhCCCCC-CEEEEE------e
Confidence 4788875432 235566778999877764333321 1 34677777777654221 234332 2
Q ss_pred CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH
Q 013789 208 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 287 (436)
Q Consensus 208 ~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~ 287 (436)
..+.+++ .+++++.+.|.|.+||-.. .+++..+.+.. +++||-.=.|.+..++..+.+
T Consensus 63 ~~~~~~i----~~~~~~~~~d~vQLHg~e~-----------------~~~~~~l~~~~-~~~iik~i~v~~~~~l~~~~~ 120 (210)
T PRK01222 63 NASDEEI----DEIVETVPLDLLQLHGDET-----------------PEFCRQLKRRY-GLPVIKALRVRSAGDLEAAAA 120 (210)
T ss_pred CCCHHHH----HHHHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCCHHHHHHHHh
Confidence 2334444 3355789999999997321 33444554443 567766656666555555444
Q ss_pred --cCCCeeeeh
Q 013789 288 --KGAHHVMVG 296 (436)
Q Consensus 288 --~Gad~VmiG 296 (436)
..||.+.+=
T Consensus 121 ~~~~~d~~L~D 131 (210)
T PRK01222 121 YYGDADGLLLD 131 (210)
T ss_pred hhccCCEEEEc
Confidence 357777654
No 423
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=87.56 E-value=21 Score=36.44 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=51.6
Q ss_pred HHHhhcCCccEEEEccCcc--cccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-----------------
Q 013789 219 YKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV----------------- 279 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~--~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~----------------- 279 (436)
.+..++.|+|.+.+.=.|. .|.+.... .-+.++++.+.++.+..+++|++.-||=..+
T Consensus 177 ~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p---~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~ 253 (347)
T TIGR01521 177 ADFVKKTKVDALAVAIGTSHGAYKFTRKP---TGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKET 253 (347)
T ss_pred HHHHHHHCcCEEehhcccccCCcCCCCCC---ChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccccccc
Confidence 3445678999998753332 11110000 0012678988888776547999999988765
Q ss_pred -----HHHHHHHHcCCCeeeehHHHH
Q 013789 280 -----DEVNAALRKGAHHVMVGRAAY 300 (436)
Q Consensus 280 -----~da~~~l~~Gad~VmiGRa~l 300 (436)
++++++++.|+.=|=|++.+-
T Consensus 254 ~g~p~e~i~~ai~~GI~KVNi~Tdl~ 279 (347)
T TIGR01521 254 YGVPVEEIVEGIKYGVRKVNIDTDLR 279 (347)
T ss_pred CCCCHHHHHHHHHCCCeeEEeChHHH
Confidence 677777778877777777663
No 424
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=87.47 E-value=2.7 Score=41.62 Aligned_cols=84 Identities=8% Similarity=0.020 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHH--
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-- 287 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~-- 287 (436)
.+.+.+.+. .+.+.|++.|.+-|-+.....++..+ +.+.+..+++.. .++|||+.-+- +.+++.++.+
T Consensus 20 ~~~l~~l~~-~l~~~Gv~gi~v~GstGE~~~Ls~eE-------r~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a 90 (289)
T cd00951 20 EDAYRAHVE-WLLSYGAAALFAAGGTGEFFSLTPDE-------YAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAA 90 (289)
T ss_pred HHHHHHHHH-HHHHcCCCEEEECcCCcCcccCCHHH-------HHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHH
Confidence 444444443 34469999999988664322222211 133444444433 36899986665 6666665443
Q ss_pred --cCCCeeeehHHHHhCC
Q 013789 288 --KGAHHVMVGRAAYQNP 303 (436)
Q Consensus 288 --~Gad~VmiGRa~l~~P 303 (436)
.|||+||+-...+..|
T Consensus 91 ~~~Gad~v~~~pP~y~~~ 108 (289)
T cd00951 91 EKAGADGILLLPPYLTEA 108 (289)
T ss_pred HHhCCCEEEECCCCCCCC
Confidence 7999999977776555
No 425
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=87.22 E-value=24 Score=36.87 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=108.0
Q ss_pred cEEEc---CCCCCChHHHHHHHH--HcCCCcEEE-eccccchhhhhcccchhhhhc-------cCCCCCcEEEEEcCCCH
Q 013789 70 WFSVA---PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDRFLA-------FSPEQHPIVLQIGGSNL 136 (436)
Q Consensus 70 ~iilA---PMagvtd~~fr~~~~--~~Gg~gl~~-temv~~~~l~~~~~~~~~~~~-------~~~~~~pi~vQL~g~~p 136 (436)
|++.+ |-.|.|..+++.++. ..||++++= -|.+.......-.+.+....+ -+-+..-..+||.+. .
T Consensus 135 PL~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~ 213 (407)
T PRK09549 135 PLLMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTGR-T 213 (407)
T ss_pred ceEEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-H
Confidence 45544 678999999999984 457777652 122222111111111111111 112234588999976 5
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh--ccCCcEEEEeccCCCCC------
Q 013789 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDDH------ 208 (436)
Q Consensus 137 ~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~--~~~iPvsvKiR~G~~~~------ 208 (436)
+++.+-++++.+.|...+-+|.. . +|- ..++.+++ ..++||-. .|.++-..
T Consensus 214 ~em~~ra~~a~~~G~~~~m~~~~-----~-----~G~----------~al~~l~~~~~~~lpIha-Hra~~ga~~r~~~~ 272 (407)
T PRK09549 214 FELKEKAKRAAEAGADALLFNVF-----A-----YGL----------DVLQSLAEDPEIPVPIMA-HPAVSGAYTPSPLY 272 (407)
T ss_pred HHHHHHHHHHHHcCCCeEEEecc-----c-----cch----------HHHHHHHhcCCCCcEEEe-cCCcccccccCCCC
Confidence 77888999999999998877741 1 131 12334444 34566543 33332210
Q ss_pred -CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC---C-CcEEEEeCCCCCHHHHH
Q 013789 209 -DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---P-DLTFTLNGGINTVDEVN 283 (436)
Q Consensus 209 -~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~---~-~iPVIanGgI~s~~da~ 283 (436)
-+.. -.+.++..-+|+|.+++.+--..+.+. . .........+.+.. . -.| +.+||+ ++..+.
T Consensus 273 Gis~~---~~l~kl~RLaGaD~~~~~~~~Gk~~~~---~-----~~~~~~~~~~~~~~~~~k~~~P-v~sGG~-~~~~~p 339 (407)
T PRK09549 273 GISSP---LLLGKLLRYAGADFSLFPSPYGSVALE---K-----EEALAIAKELTEDDDPFKRSFP-VPSAGI-HPGLVP 339 (407)
T ss_pred cCcHH---HHHHHHHHHcCCCccccCCCcCCcCCC---H-----HHHHHHHHHHhccccCCCccEE-eecCCC-ChhHHH
Confidence 1111 124566667999998875321111111 0 00012222222221 1 234 456777 678888
Q ss_pred HHHH-cCCCe-eeehHHHHhCCcch
Q 013789 284 AALR-KGAHH-VMVGRAAYQNPWYT 306 (436)
Q Consensus 284 ~~l~-~Gad~-VmiGRa~l~~P~lf 306 (436)
++++ .|-|. .++|-|+++.||=.
T Consensus 340 ~~~~~~G~D~il~~GGgi~gHp~G~ 364 (407)
T PRK09549 340 LLIRDFGKDVVINAGGGIHGHPNGA 364 (407)
T ss_pred HHHHHhCCceEEecCCceecCCCCc
Confidence 8887 89874 46799999999853
No 426
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=87.17 E-value=1.1 Score=44.68 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH----
Q 013789 212 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---- 287 (436)
Q Consensus 212 ~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~---- 287 (436)
.+..+.+.+.+.+.|+|.|.+-|-|....-++..+...+ .+.+.+.+.. ++|||+--|=.+.+++.+.-+
T Consensus 24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v----~~~~v~~~~g--rvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 24 EEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEV----LEAVVEAVGG--RVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHH----HHHHHHHHCC--CCcEEEecCCCcHHHHHHHHHHHHh
Q ss_pred cCCCeeeehHHHHhCC
Q 013789 288 KGAHHVMVGRAAYQNP 303 (436)
Q Consensus 288 ~Gad~VmiGRa~l~~P 303 (436)
.|+|++|+-...+..|
T Consensus 98 ~Gad~il~v~PyY~k~ 113 (299)
T COG0329 98 LGADGILVVPPYYNKP 113 (299)
T ss_pred cCCCEEEEeCCCCcCC
No 427
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=87.17 E-value=16 Score=36.26 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=52.9
Q ss_pred HHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH-HHHHHHHHcCCCeeeehHH
Q 013789 220 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRA 298 (436)
Q Consensus 220 ~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~-~da~~~l~~Gad~VmiGRa 298 (436)
+.+++.|+|++.|.=.|. .|.-. ..+.++++.+.++.+.. ++|++.-||=..+ ++++++.+.|+.=|=|++.
T Consensus 162 ~Fv~~TgvD~LAvaiGt~--HG~y~----~~p~Ld~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~ 234 (284)
T PRK12857 162 RFVEETGVDALAIAIGTA--HGPYK----GEPKLDFDRLAKIKELV-NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTN 234 (284)
T ss_pred HHHHHHCCCEEeeccCcc--ccccC----CCCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcH
Confidence 345678999998754332 12110 12456799998887765 8999988876655 6677788899999999988
Q ss_pred HHh
Q 013789 299 AYQ 301 (436)
Q Consensus 299 ~l~ 301 (436)
+..
T Consensus 235 ~~~ 237 (284)
T PRK12857 235 IRE 237 (284)
T ss_pred HHH
Confidence 744
No 428
>PLN02417 dihydrodipicolinate synthase
Probab=87.13 E-value=3.4 Score=40.73 Aligned_cols=86 Identities=14% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHH---
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAAL--- 286 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l--- 286 (436)
.+.+.+.+..+ .+.|++.|.+-|-+....-++..+ +.+.+...++.. .++|||+.=+=.+.+++.+..
T Consensus 21 ~~~~~~~i~~l-~~~Gv~Gi~~~GstGE~~~ls~~E-------r~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a 92 (280)
T PLN02417 21 LEAYDSLVNMQ-IENGAEGLIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQG 92 (280)
T ss_pred HHHHHHHHHHH-HHcCCCEEEECccCcchhhCCHHH-------HHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHH
Confidence 33444444333 458999999988764322222111 133343344433 258988655544555555443
Q ss_pred -HcCCCeeeehHHHHhCCc
Q 013789 287 -RKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 287 -~~Gad~VmiGRa~l~~P~ 304 (436)
+.|||+||+.-..+..|.
T Consensus 93 ~~~Gadav~~~~P~y~~~~ 111 (280)
T PLN02417 93 FAVGMHAALHINPYYGKTS 111 (280)
T ss_pred HHcCCCEEEEcCCccCCCC
Confidence 389999999988777663
No 429
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=87.09 E-value=5.8 Score=37.27 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhC
Q 013789 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302 (436)
Q Consensus 255 ~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 302 (436)
++++..+... ..-||+..|||.-.+|...+...|+++|.+||++..-
T Consensus 170 ~E~l~~~~~~-s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 170 YELLTKVLEL-SEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred HHHHHHHHHh-ccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 6666665543 3679999999999999999999999999999998653
No 430
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.09 E-value=1.9 Score=43.12 Aligned_cols=84 Identities=7% Similarity=0.008 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHH--
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-- 287 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~-- 287 (436)
.+.+.+.+. .+.+.|++.|.+-|-+.....++..+ +.+.+..+++.. .++|||+.-+- +.+++.+..+
T Consensus 27 ~~~l~~li~-~l~~~Gv~Gi~~~GstGE~~~Lt~eE-------r~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a 97 (303)
T PRK03620 27 EAAYREHLE-WLAPYGAAALFAAGGTGEFFSLTPDE-------YSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAA 97 (303)
T ss_pred HHHHHHHHH-HHHHcCCCEEEECcCCcCcccCCHHH-------HHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHH
Confidence 444545444 44569999999988764332232211 233444444433 26899865553 5555555443
Q ss_pred --cCCCeeeehHHHHhCC
Q 013789 288 --KGAHHVMVGRAAYQNP 303 (436)
Q Consensus 288 --~Gad~VmiGRa~l~~P 303 (436)
.|||+||+-...+..|
T Consensus 98 ~~~Gadav~~~pP~y~~~ 115 (303)
T PRK03620 98 ERAGADGILLLPPYLTEA 115 (303)
T ss_pred HHhCCCEEEECCCCCCCC
Confidence 7999999977665544
No 431
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.01 E-value=7.9 Score=38.40 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=57.9
Q ss_pred HHHHHHHHhhccC--CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHH
Q 013789 182 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 259 (436)
Q Consensus 182 l~eiv~av~~~~~--iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~ 259 (436)
+.+.++.+++..+ .+|.|-+ ++.+++.+. + ++|+|.|-+-.-+ .+-+.
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv-------~slee~~ea----~-~~gaDiImLDn~s------------------~e~l~ 228 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEV-------DRLDQIEPV----L-AAGVDTIMLDNFS------------------LDDLR 228 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEe-------CCHHHHHHH----H-hcCCCEEEECCCC------------------HHHHH
Confidence 3445555555433 3344322 345555442 2 5899998874221 22222
Q ss_pred HHHhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 260 ALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 260 ~l~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
+.++.. ....+.++||| +.+.+.++.++|+|.+.+|.-...-||+
T Consensus 229 ~av~~~~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~galths~~~~ 274 (281)
T PRK06543 229 EGVELVDGRAIVEASGNV-NLNTVGAIASTGVDVISVGALTHSVRAL 274 (281)
T ss_pred HHHHHhCCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCCccc
Confidence 332221 14679999999 7899999999999999999976666665
No 432
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=86.92 E-value=1.9 Score=39.42 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=43.9
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeee
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~Vmi 295 (436)
.+++.+.|+|.+-+ |.. -..+..+.++. ++|||+.|=|.+-+++.++++.||-+|--
T Consensus 116 ~i~~~~pD~iEvLP------Gv~-----------Pkvi~~i~~~t-~~piIAGGLi~t~Eev~~Al~aGA~avST 172 (181)
T COG1954 116 QIEKSEPDFIEVLP------GVM-----------PKVIKEITEKT-HIPIIAGGLIETEEEVREALKAGAVAVST 172 (181)
T ss_pred HHHHcCCCEEEEcC------ccc-----------HHHHHHHHHhc-CCCEEeccccccHHHHHHHHHhCcEEEee
Confidence 34568899999864 221 23455565654 89999999999999999999999988863
No 433
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=86.88 E-value=17 Score=38.14 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=88.9
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
+++++.. .++|++.-+. |-+|+.+++.+..+..-|+|.|-=.-....... +-+.++.+.+.+.++..
T Consensus 122 ~R~~lgv--~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~-------~p~~~Rv~~~~~a~~~a 192 (412)
T cd08213 122 VREILGI--KDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPF-------NRFEERAKESLKARDKA 192 (412)
T ss_pred HHHHhCC--CCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCC-------CCHHHHHHHHHHHHHHH
Confidence 4445443 5799998886 668999999999888889887632211111100 01113344444444444
Q ss_pred hhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC--CC
Q 013789 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PD 267 (436)
Q Consensus 190 ~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~--~~ 267 (436)
.+.+|.....- .+++. ..+++.+. ++.+.+.|++++-+..-+. | |..+..+.+.. .+
T Consensus 193 ~~eTG~~~~y~--~NiT~--~~~em~~r-a~~a~e~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~~ 251 (412)
T cd08213 193 EAETGERKAYL--ANITA--PVREMERR-AELVADLGGKYVMIDVVVA---G-------------WSALQYLRDLAEDYG 251 (412)
T ss_pred HHhhCCcceEE--EEecC--CHHHHHHH-HHHHHHhCCCeEEeecccc---C-------------hHHHHHHHHhccccC
Confidence 45566543222 22232 25566665 3455668998887754332 3 44455555532 25
Q ss_pred cEEEE----eC--------CCCCHHHHHHHHH-cCCCeeeehHH
Q 013789 268 LTFTL----NG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 268 iPVIa----nG--------gI~s~~da~~~l~-~Gad~VmiGRa 298 (436)
+||.+ .| ||.- .-..++.+ .|+|.+.+++.
T Consensus 252 l~ihaHra~~ga~~r~~~~Gis~-~~l~kl~RLaGaD~ih~~t~ 294 (412)
T cd08213 252 LAIHAHRAMHAAFTRNPRHGISM-LVLAKLYRLIGVDQLHIGTA 294 (412)
T ss_pred eEEEECCCcceecccCCcCcCcH-HHHHHHHHHcCCCccccCCc
Confidence 78876 12 5543 45556666 89999998886
No 434
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=86.88 E-value=17 Score=37.99 Aligned_cols=195 Identities=14% Similarity=0.143 Sum_probs=106.3
Q ss_pred CCCCCChHHHHHHHH--HcCCCcEEE-eccccchhhhhcccchhhhhc----c-CC--CCCcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDRFLA----F-SP--EQHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~~--~~Gg~gl~~-temv~~~~l~~~~~~~~~~~~----~-~~--~~~pi~vQL~g~~p~~~~~aA~ 144 (436)
|-.|.|..+++.++. ..||++++= -|.+..+....-.+......+ . .+ +..-..+||.+. ++++.+-++
T Consensus 140 P~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~ 218 (412)
T cd08213 140 PKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANITAP-VREMERRAE 218 (412)
T ss_pred cccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecCC-HHHHHHHHH
Confidence 778999999999984 457777642 122221111111111111111 1 11 233488999976 999999999
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh---ccCCcEEEEeccCCCCC-------CcHHHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDDH-------DSYNQL 214 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~---~~~iPvsvKiR~G~~~~-------~~~~~~ 214 (436)
++.++|.+.+-+|.. . +|- ..+..+++ ..++||-. .|.++... -+.
T Consensus 219 ~a~e~G~~~~mv~~~-----~-----~G~----------~~l~~l~~~~~~~~l~iha-Hra~~ga~~r~~~~Gis~--- 274 (412)
T cd08213 219 LVADLGGKYVMIDVV-----V-----AGW----------SALQYLRDLAEDYGLAIHA-HRAMHAAFTRNPRHGISM--- 274 (412)
T ss_pred HHHHhCCCeEEeecc-----c-----cCh----------HHHHHHHHhccccCeEEEE-CCCcceecccCCcCcCcH---
Confidence 999999988777631 1 121 12344444 34566644 33333211 122
Q ss_pred HHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhc--------------C---C-CcEEEEeCCC
Q 013789 215 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------------F---P-DLTFTLNGGI 276 (436)
Q Consensus 215 ~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~--------------~---~-~iPVIanGgI 276 (436)
..+.++..-+|+|.+++.+--..+.+. ... -......+... . . -.|| .+||+
T Consensus 275 -~~l~kl~RLaGaD~ih~~t~~Gk~~~~---~~~-----~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv-~sGG~ 344 (412)
T cd08213 275 -LVLAKLYRLIGVDQLHIGTAVGKMEGD---KEE-----VLRIADILREQKYKPDEEDFHLAQDWGGIKPVFPV-ASGGL 344 (412)
T ss_pred -HHHHHHHHHcCCCccccCCccCCcCCC---HHH-----HHHHHHHHHhccccccchhccccCccccCCCceEe-cCCCC
Confidence 134667777999999875322111111 000 01111222211 0 1 2344 56777
Q ss_pred CCHHHHHHHHH-cCCCe-eeehHHHHhCCcc
Q 013789 277 NTVDEVNAALR-KGAHH-VMVGRAAYQNPWY 305 (436)
Q Consensus 277 ~s~~da~~~l~-~Gad~-VmiGRa~l~~P~l 305 (436)
++..+.+.++ .|-|. .++|-|+++.||=
T Consensus 345 -~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G 374 (412)
T cd08213 345 -HPGLVPDVIDILGKDIVIQVGGGVHGHPDG 374 (412)
T ss_pred -ChhHHHHHHHHhCCceEEecCCceecCCCC
Confidence 6788888887 89884 4678999999985
No 435
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=86.71 E-value=9.1 Score=37.10 Aligned_cols=133 Identities=14% Similarity=0.184 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEe-----------cCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc
Q 013789 135 NLDNLAKATELANAYNYDEINL-----------NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 203 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdL-----------N~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~ 203 (436)
..+++.+..+++.+.|.+.+-- ..++|.-|+ +|.-+.+..++..+.+ .++||.+ ..
T Consensus 54 ~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KI------aS~dl~n~~lL~~~A~-----tgkPvIl--ST 120 (241)
T PF03102_consen 54 SEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKI------ASGDLTNLPLLEYIAK-----TGKPVIL--ST 120 (241)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-------GGGTT-HHHHHHHHT-----T-S-EEE--E-
T ss_pred CHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEe------ccccccCHHHHHHHHH-----hCCcEEE--EC
Confidence 3578888888888888765433 346777775 4555577777766543 6899765 45
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q 013789 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 283 (436)
Q Consensus 204 G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~ 283 (436)
|.. +.+|+.+.+..+-+..+.+.+.+|+-.. +..+.+ ..++..+..+.+.+ ++||-.++=-....-..
T Consensus 121 G~s---tl~EI~~Av~~~~~~~~~~l~llHC~s~---YP~~~e-----~~NL~~i~~L~~~f-~~~vG~SDHt~g~~~~~ 188 (241)
T PF03102_consen 121 GMS---TLEEIERAVEVLREAGNEDLVLLHCVSS---YPTPPE-----DVNLRVIPTLKERF-GVPVGYSDHTDGIEAPI 188 (241)
T ss_dssp TT-----HHHHHHHHHHHHHHCT--EEEEEE-SS---SS--GG-----G--TTHHHHHHHHS-TSEEEEEE-SSSSHHHH
T ss_pred CCC---CHHHHHHHHHHHHhcCCCCEEEEecCCC---CCCChH-----HcChHHHHHHHHhc-CCCEEeCCCCCCcHHHH
Confidence 543 3445555443333445566667787654 322222 13356677777788 59997777666555555
Q ss_pred HHHHcCCCe
Q 013789 284 AALRKGAHH 292 (436)
Q Consensus 284 ~~l~~Gad~ 292 (436)
.+...||..
T Consensus 189 ~AvalGA~v 197 (241)
T PF03102_consen 189 AAVALGARV 197 (241)
T ss_dssp HHHHTT-SE
T ss_pred HHHHcCCeE
Confidence 666677654
No 436
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=86.63 E-value=3.4 Score=40.97 Aligned_cols=86 Identities=9% Similarity=-0.013 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhc-CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHH--
Q 013789 211 YNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAAL-- 286 (436)
Q Consensus 211 ~~~~~~~la~~~e~-~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l-- 286 (436)
.+.+.+.+. .+.+ .|++.|.+-|-+....-++..+ +.+.+...++... ++|||+.=+-.+.+++.++.
T Consensus 23 ~~~~~~li~-~l~~~~Gv~gi~v~GstGE~~~Ls~eE-------r~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~ 94 (293)
T PRK04147 23 EQGLRRLVR-FNIEKQGIDGLYVGGSTGEAFLLSTEE-------KKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKY 94 (293)
T ss_pred HHHHHHHHH-HHHhcCCCCEEEECCCccccccCCHHH-------HHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHH
Confidence 444444444 4445 9999999988764322222211 2333444444332 58998765556666665543
Q ss_pred --HcCCCeeeehHHHHhCCc
Q 013789 287 --RKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 287 --~~Gad~VmiGRa~l~~P~ 304 (436)
+.|||+||+-...+..|.
T Consensus 95 a~~~Gad~v~v~~P~y~~~~ 114 (293)
T PRK04147 95 ATELGYDAISAVTPFYYPFS 114 (293)
T ss_pred HHHcCCCEEEEeCCcCCCCC
Confidence 389999999998887763
No 437
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=86.50 E-value=8.6 Score=37.48 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=33.9
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 266 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 266 ~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.++||+.-|+|....+...+.+.++||+.||+|.+.-..
T Consensus 201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~ 239 (251)
T COG0149 201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADD 239 (251)
T ss_pred CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchh
Confidence 489999999998888877777899999999999987555
No 438
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=86.43 E-value=17 Score=35.88 Aligned_cols=126 Identities=15% Similarity=0.126 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc--CCcEEEEeccCCCCCCcHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 212 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~--~iPvsvKiR~G~~~~~~~~ 212 (436)
|.+.+.+..+.+.+.|+++|=+|.. .|+ +.. -..+.=.++++.+++.+ .+||.+-+. . .+..
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs--------~GE-~~~--ls~~Er~~~~~~~~~~~~~~~~vi~gv~----~-~~~~ 83 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGT--------TGE-SPT--LTHEEHEELIRAVVEAVNGRVPVIAGTG----S-NSTA 83 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCc--------CCc-ccc--CCHHHHHHHHHHHHHHhCCCCcEEeecC----C-chHH
Confidence 5688888899999999999987632 122 211 22222334444444433 367654322 2 2344
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEE------EeCCCCCHHHHHHHH
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT------LNGGINTVDEVNAAL 286 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVI------anGgI~s~~da~~~l 286 (436)
+..+. ++.+++.|+|++.+..= .+...+. . .-.+++.++.+.. ++||+ ..|--.+++.+.++.
T Consensus 84 ~~i~~-a~~a~~~G~d~v~~~pP--~~~~~~~---~----~i~~~~~~ia~~~-~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 84 EAIEL-TKFAEKAGADGALVVTP--YYNKPTQ---E----GLYQHFKAIAEAT-DLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred HHHHH-HHHHHHcCCCEEEECCC--cCCCCCH---H----HHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHH
Confidence 44543 56678899999998631 1111110 0 1155666777664 78876 245556777777665
Q ss_pred H
Q 013789 287 R 287 (436)
Q Consensus 287 ~ 287 (436)
+
T Consensus 153 ~ 153 (292)
T PRK03170 153 E 153 (292)
T ss_pred c
Confidence 4
No 439
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.42 E-value=2.1 Score=42.87 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHH--
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALR-- 287 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~-- 287 (436)
.+.+.+.+.. +.+.|++.|.+-|-+.....++..+ +.+.+...++... ++|||+.=+=.+.+++.++.+
T Consensus 28 ~~~l~~lv~~-li~~Gv~Gi~v~GstGE~~~Lt~eE-------r~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 28 LDETARLVER-LIAAGVDGILTMGTFGECATLTWEE-------KQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred HHHHHHHHHH-HHHcCCCEEEECcccccchhCCHHH-------HHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHH
Confidence 3444444443 3459999999988764322222211 1333444444332 589886655555566555443
Q ss_pred --cCCCeeeehHHHHhCC
Q 013789 288 --KGAHHVMVGRAAYQNP 303 (436)
Q Consensus 288 --~Gad~VmiGRa~l~~P 303 (436)
.|||+||+-...+..|
T Consensus 100 ~~~Gad~vlv~~P~y~~~ 117 (309)
T cd00952 100 LDLGADGTMLGRPMWLPL 117 (309)
T ss_pred HHhCCCEEEECCCcCCCC
Confidence 7999999998877666
No 440
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=28 Score=35.63 Aligned_cols=127 Identities=14% Similarity=0.112 Sum_probs=72.7
Q ss_pred HHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHh
Q 013789 143 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 222 (436)
Q Consensus 143 A~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~ 222 (436)
.+.+.++|+|.|=+..- . ...| . -++--..+-+.+.++-+.++ |..+.|-+..-... +..+.+.+.+..+
T Consensus 19 l~~ai~~GADaVY~G~~--~-~~~R-~---~a~nfs~~~l~e~i~~ah~~-gkk~~V~~N~~~~~-~~~~~~~~~l~~l- 88 (347)
T COG0826 19 LKAAIAAGADAVYIGEK--E-FGLR-R---RALNFSVEDLAEAVELAHSA-GKKVYVAVNTLLHN-DELETLERYLDRL- 88 (347)
T ss_pred HHHHHHcCCCEEEeCCc--c-cccc-c---ccccCCHHHHHHHHHHHHHc-CCeEEEEecccccc-chhhHHHHHHHHH-
Confidence 34455678998877642 1 1111 1 11112234466777666554 55555554443322 2344444554444
Q ss_pred hcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe--CCCCCHHHHHHHHHcCCCeeeehHHH
Q 013789 223 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--GGINTVDEVNAALRKGAHHVMVGRAA 299 (436)
Q Consensus 223 e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan--GgI~s~~da~~~l~~Gad~VmiGRa~ 299 (436)
.+.|+|+|++.. ..++.-+.+..|++||.++ -.|.+++.++-+-+.|+.-|++.|-+
T Consensus 89 ~e~GvDaviv~D--------------------pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 89 VELGVDAVIVAD--------------------PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPREL 147 (347)
T ss_pred HHcCCCEEEEcC--------------------HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccC
Confidence 469999999851 3334444455667777655 67788888877777778888877743
No 441
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=86.35 E-value=8.9 Score=37.87 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=65.7
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCC
Q 013789 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251 (436)
Q Consensus 172 G~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~ 251 (436)
|+.++++.+++. ++. .++.||-+|.-.... .+++.-.+.++ ...|...|.+.=|-... |.. --
T Consensus 113 gAr~~rntdLL~----a~~-~t~kpV~lKrGqf~s----~~e~~~aae~i-~~~Gn~~vilcERG~~f-gy~------~~ 175 (281)
T PRK12457 113 PAFLARQTDLVV----AIA-KTGKPVNIKKPQFMS----PTQMKHVVSKC-REAGNDRVILCERGSSF-GYD------NL 175 (281)
T ss_pred CchhhchHHHHH----HHh-ccCCeEEecCCCcCC----HHHHHHHHHHH-HHcCCCeEEEEeCCCCC-CCC------Cc
Confidence 555556665554 432 358999999775443 23444433333 45888888886553211 211 12
Q ss_pred CccHHHHHHHHhcCCCcEEEEe---------------CCCCC--HHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 252 PLKYEYYYALLRDFPDLTFTLN---------------GGINT--VDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 252 ~~~~~~v~~l~~~~~~iPVIan---------------GgI~s--~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.+++..+..+.+..+++|||.- ||.++ +.-+.+++..||||+++=. .-||.
T Consensus 176 ~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv--HpdP~ 243 (281)
T PRK12457 176 VVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA--HPDPD 243 (281)
T ss_pred ccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe--cCCcc
Confidence 3446666666554458999863 44433 2334556668999999863 44554
No 442
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=86.33 E-value=8.6 Score=38.88 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=60.9
Q ss_pred CChHHHHHHHHHHhhc-cCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccH
Q 013789 177 LDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255 (436)
Q Consensus 177 ~~~~~l~eiv~av~~~-~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~ 255 (436)
..++.+.+.++.+++. .+.|+.|-+-. +.......+..+ ++.+.+++.++.++... .
T Consensus 37 ~~~e~l~~~i~~~~~l~tdkPfGVnl~~-~~~~~~~~~~l~----vi~e~~v~~V~~~~G~P-----------------~ 94 (320)
T cd04743 37 MRGEQVKALLEETAELLGDKPWGVGILG-FVDTELRAAQLA----VVRAIKPTFALIAGGRP-----------------D 94 (320)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEec-cCCCcchHHHHH----HHHhcCCcEEEEcCCCh-----------------H
Confidence 3578899999999885 68999887733 322222333333 23357999998875211 1
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeee
Q 013789 256 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (436)
Q Consensus 256 ~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~Vmi 295 (436)
. +.++. +. .+.|+ .-+.|.+.++++.+.|||+|.+
T Consensus 95 ~-~~~lk-~~-Gi~v~--~~v~s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 95 Q-ARALE-AI-GISTY--LHVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred H-HHHHH-HC-CCEEE--EEeCCHHHHHHHHHcCCCEEEE
Confidence 1 23433 33 67777 5678999999999999999873
No 443
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=86.19 E-value=23 Score=37.04 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=87.2
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
+++++.+ .++|++.-+. |-+|+.+++++..+..-|.|.|-=.-+...... +-+.++.+.+.+.++..
T Consensus 125 ~R~~lgv--~~RPL~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~-------~p~~eRv~~~~~a~~~a 195 (407)
T PRK09549 125 IRNLLGV--HDRPLLMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENAL-------TPFEKRIVAGKEVLQEV 195 (407)
T ss_pred HHHHhCC--CCCceEEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCC-------cCHHHHHHHHHHHHHHH
Confidence 4445443 6799998876 668999999999888888887633211111100 01113334444444444
Q ss_pred hhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCc
Q 013789 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDL 268 (436)
Q Consensus 190 ~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~i 268 (436)
.+.+|..... -.+++. ...++.+. ++.+.+.|+.++-+..-+. | |..+..+.++. .++
T Consensus 196 ~~eTG~~~~y--~~NiT~--~~~em~~r-a~~a~~~G~~~~m~~~~~~---G-------------~~al~~l~~~~~~~l 254 (407)
T PRK09549 196 YETTGHKTLY--AVNLTG--RTFELKEK-AKRAAEAGADALLFNVFAY---G-------------LDVLQSLAEDPEIPV 254 (407)
T ss_pred HHhhCCcceE--EEecCC--CHHHHHHH-HHHHHHcCCCeEEEecccc---c-------------hHHHHHHHhcCCCCc
Confidence 4456654322 222232 23456655 3445569998887754332 2 45555665531 257
Q ss_pred EEEE----eC--------CCCCHHHHHHHHH-cCCCeeeehHH
Q 013789 269 TFTL----NG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 269 PVIa----nG--------gI~s~~da~~~l~-~Gad~VmiGRa 298 (436)
||.+ .| ||...--..++.+ .|+|.+.++..
T Consensus 255 pIhaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 297 (407)
T PRK09549 255 PIMAHPAVSGAYTPSPLYGISSPLLLGKLLRYAGADFSLFPSP 297 (407)
T ss_pred EEEecCCcccccccCCCCcCcHHHHHHHHHHHcCCCccccCCC
Confidence 7763 23 4433333555666 89999999864
No 444
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.13 E-value=10 Score=37.98 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=58.6
Q ss_pred CCCcEEEEEcC-------CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCC
Q 013789 123 EQHPIVLQIGG-------SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (436)
Q Consensus 123 ~~~pi~vQL~g-------~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i 195 (436)
.+.|+.+=+.. .++++..+.++.++++|+|.|++..+......... +... .....-.+.++.+++.+++
T Consensus 207 ~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~---~~~~-~~~~~~~~~~~~ir~~~~i 282 (327)
T cd02803 207 PDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPII---PPPY-VPEGYFLELAEKIKKAVKI 282 (327)
T ss_pred CCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc---CCCC-CCcchhHHHHHHHHHHCCC
Confidence 45577776653 35788889999999999999999887654221100 0000 0112334556667777788
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccC
Q 013789 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (436)
Q Consensus 196 PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgr 235 (436)
||.+- -|+. +.++. .+++++.|+|.|.+ ||
T Consensus 283 PVi~~--Ggi~---t~~~a----~~~l~~g~aD~V~i-gR 312 (327)
T cd02803 283 PVIAV--GGIR---DPEVA----EEILAEGKADLVAL-GR 312 (327)
T ss_pred CEEEe--CCCC---CHHHH----HHHHHCCCCCeeee-cH
Confidence 87653 2232 33333 33455568998776 44
No 445
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=86.06 E-value=18 Score=33.31 Aligned_cols=126 Identities=10% Similarity=0.063 Sum_probs=76.8
Q ss_pred EEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcEEE--EeccC
Q 013789 128 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSV--KCRIG 204 (436)
Q Consensus 128 ~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPvsv--KiR~G 204 (436)
++-|=-.+++...+.++.+.+. ++.|+++. |.. . .+| .+.++.+++. .++|+.+ |+..
T Consensus 4 ~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~--~~~--~---~~g----------~~~i~~i~~~~~~~~i~~~~~v~~- 64 (202)
T cd04726 4 QVALDLLDLEEALELAKKVPDG-VDIIEAGT--PLI--K---SEG----------MEAVRALREAFPDKIIVADLKTAD- 64 (202)
T ss_pred EEEEcCCCHHHHHHHHHHhhhc-CCEEEcCC--HHH--H---HhC----------HHHHHHHHHHCCCCEEEEEEEecc-
Confidence 3444345678778888888887 99999952 221 1 123 3566666664 4777765 3331
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe-CCCCCHHHHH
Q 013789 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINTVDEVN 283 (436)
Q Consensus 205 ~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan-GgI~s~~da~ 283 (436)
... .. .+.+.++|+|.+++|+... . ...+.+.+..++. +++++.. =+..|+.++.
T Consensus 65 ---~~~--~~----~~~~~~aGad~i~~h~~~~-------~-------~~~~~~i~~~~~~-g~~~~v~~~~~~t~~e~~ 120 (202)
T cd04726 65 ---AGA--LE----AEMAFKAGADIVTVLGAAP-------L-------STIKKAVKAAKKY-GKEVQVDLIGVEDPEKRA 120 (202)
T ss_pred ---ccH--HH----HHHHHhcCCCEEEEEeeCC-------H-------HHHHHHHHHHHHc-CCeEEEEEeCCCCHHHHH
Confidence 111 11 2233469999999997431 0 0022222333443 6777764 7888999999
Q ss_pred HHHHcCCCeeeeh
Q 013789 284 AALRKGAHHVMVG 296 (436)
Q Consensus 284 ~~l~~Gad~VmiG 296 (436)
+++..|+|.|.++
T Consensus 121 ~~~~~~~d~v~~~ 133 (202)
T cd04726 121 KLLKLGVDIVILH 133 (202)
T ss_pred HHHHCCCCEEEEc
Confidence 8777899999985
No 446
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=85.85 E-value=12 Score=37.93 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=35.2
Q ss_pred HHHHHHH-HHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEE
Q 013789 140 AKATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (436)
Q Consensus 140 ~~aA~~~-~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvK 200 (436)
++.|++. +++|+|.|+||+-...+. +++ ..++.+..+++.|.+.+++|+.+-
T Consensus 78 ~~~Ak~q~~~~GAd~Idl~~~s~dp~--~~d-------~~~~e~~~~Vk~V~eavd~PL~Id 130 (319)
T PRK04452 78 AAWAKKCVEEYGADMITLHLISTDPN--GKD-------KSPEEAAKTVEEVLQAVDVPLIIG 130 (319)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCcc--ccc-------chHHHHHHHHHHHHHhCCCCEEEe
Confidence 3444454 489999999996433321 112 346667789999988899999764
No 447
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=85.72 E-value=8.6 Score=38.55 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHH
Q 013789 178 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 257 (436)
Q Consensus 178 ~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~ 257 (436)
.++.+.+-++.+++..+.|+.+-+..- . ....+..+ ++.+.|++.|.+++ |. | .++
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~-~--~~~~~~~~----~~~~~~v~~v~~~~------g~---------p--~~~ 101 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLL-S--PFVDELVD----LVIEEKVPVVTTGA------GN---------P--GKY 101 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecC-C--CCHHHHHH----HHHhCCCCEEEEcC------CC---------c--HHH
Confidence 578899999999988888887765431 1 22333322 23358999988753 21 1 345
Q ss_pred HHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeee
Q 013789 258 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 295 (436)
Q Consensus 258 v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~Vmi 295 (436)
+.++.+. ++.|++ .|.+.+.+.++.+.|||.|.+
T Consensus 102 i~~lk~~--g~~v~~--~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 102 IPRLKEN--GVKVIP--VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHHc--CCEEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 5555443 677774 889999999999999999987
No 448
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=85.55 E-value=9.8 Score=37.81 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=57.5
Q ss_pred HHHHHHHHhhccC-CcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHH
Q 013789 182 VGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260 (436)
Q Consensus 182 l~eiv~av~~~~~-iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~ 260 (436)
+.+.++.+++..+ .+|.|-+ ++.+++.+ ++ ++|+|.|-+-.-+ .+.+.+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv-------~tleqa~e----a~-~agaDiI~LDn~~------------------~e~l~~ 225 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEA-------DTPKEAIA----AL-RAQPDVLQLDKFS------------------PQQATE 225 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEEC-------CCHHHHHH----HH-HcCCCEEEECCCC------------------HHHHHH
Confidence 4456666665432 3344432 35555544 22 5999998873211 222222
Q ss_pred HH---h-cCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCcc
Q 013789 261 LL---R-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 261 l~---~-~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
.+ + ..+++.+-++||| +.+.+.++.++|+|.+.+|--... |++
T Consensus 226 av~~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal~~a-~~~ 272 (284)
T PRK06096 226 IAQIAPSLAPHCTLSLAGGI-NLNTLKNYADCGIRLFITSAPYYA-APA 272 (284)
T ss_pred HHHHhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECccccC-CCc
Confidence 22 2 2357889999999 789999999999999988876444 554
No 449
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=85.36 E-value=3.9 Score=41.55 Aligned_cols=87 Identities=6% Similarity=-0.031 Sum_probs=54.7
Q ss_pred cEEEEEc----------CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCC
Q 013789 126 PIVLQIG----------GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195 (436)
Q Consensus 126 pi~vQL~----------g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~i 195 (436)
++.+=|. +.+.+++.+.++.+++.|+|.|++..|...... ...-.+..+.+++++++
T Consensus 220 ~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-------------~~~~~~~~~~ik~~~~i 286 (338)
T cd02933 220 RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-------------EDQPPDFLDFLRKAFKG 286 (338)
T ss_pred ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-------------cccchHHHHHHHHHcCC
Confidence 6777664 346788899999999999999999776433211 11223555566677789
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCc
Q 013789 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 236 (436)
Q Consensus 196 PvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt 236 (436)
||.+-=+ ++ .++. .+++++.++|.|.+ ||.
T Consensus 287 pvi~~G~--i~----~~~a----~~~l~~g~~D~V~~-gR~ 316 (338)
T cd02933 287 PLIAAGG--YD----AESA----EAALADGKADLVAF-GRP 316 (338)
T ss_pred CEEEECC--CC----HHHH----HHHHHcCCCCEEEe-CHh
Confidence 9876433 22 2222 33455667888765 443
No 450
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=85.21 E-value=24 Score=33.83 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEeccCCCCCCcHHH
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 213 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKiR~G~~~~~~~~~ 213 (436)
+.++..+.++.+.++|++.||+..+.|.+.+ .+..+ ..++++.+++.. +.++.+-.|.|. +
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~--------p~~~~---~~~~i~~l~~~~~~~~~~~l~~~~~-------~ 78 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAV--------PQMED---DWEVLRAIRKLVPNVKLQALVRNRE-------K 78 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcccc--------ccCCC---HHHHHHHHHhccCCcEEEEEccCch-------h
Confidence 5688888899999999999999988776432 11222 345566666544 566766666541 1
Q ss_pred HHHHHHHHhhcCCccEEEEcc
Q 013789 214 LCDFIYKVSSLSPTRHFIIHS 234 (436)
Q Consensus 214 ~~~~la~~~e~~Gvd~I~vhg 234 (436)
. +. .+.++|++.|.+..
T Consensus 79 ~---i~-~a~~~g~~~i~i~~ 95 (265)
T cd03174 79 G---IE-RALEAGVDEVRIFD 95 (265)
T ss_pred h---HH-HHHhCCcCEEEEEE
Confidence 1 12 23468999998853
No 451
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=85.18 E-value=6.7 Score=39.38 Aligned_cols=71 Identities=8% Similarity=0.101 Sum_probs=45.8
Q ss_pred CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCC
Q 013789 225 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 225 ~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 303 (436)
+|+|.|-+-.-.. ++.+- .. ..+.+.+.++.. ..+|+-++||| +.+.+.++.++|+|.+.+|.-...-|
T Consensus 228 agaDiImLDnm~~-----~~~~~-~~---~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galthsa~ 297 (308)
T PLN02716 228 TSLTRVMLDNMVV-----PLENG-DV---DVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQTGVTYISSGALTHSVK 297 (308)
T ss_pred CCCCEEEeCCCcc-----ccccc-CC---CHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHHcCCCEEEeCccccCCC
Confidence 8999988753310 11100 00 133344443322 25789999999 78999999999999999998665455
Q ss_pred cc
Q 013789 304 WY 305 (436)
Q Consensus 304 ~l 305 (436)
++
T Consensus 298 ~~ 299 (308)
T PLN02716 298 AL 299 (308)
T ss_pred cc
Confidence 54
No 452
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=85.10 E-value=9.4 Score=36.73 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=66.4
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCC
Q 013789 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251 (436)
Q Consensus 172 G~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~ 251 (436)
|=.+..+.+.+.++++.+++. |+.||+=+.+. .+.+ +.+.+.|+|.|-+|...-.. ..... ..
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiDPd------~~qi-----~~A~~~GAd~VELhTG~Ya~-a~~~~---~~- 164 (234)
T cd00003 102 GLDVAGQAEKLKPIIERLKDA-GIRVSLFIDPD------PEQI-----EAAKEVGADRVELHTGPYAN-AYDKA---ER- 164 (234)
T ss_pred cchhhcCHHHHHHHHHHHHHC-CCEEEEEeCCC------HHHH-----HHHHHhCcCEEEEechhhhc-CCCch---hH-
Confidence 666777888888888888654 77777755441 2221 23356899999999543100 00000 00
Q ss_pred CccHHHHHH---HHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCC
Q 013789 252 PLKYEYYYA---LLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 303 (436)
Q Consensus 252 ~~~~~~v~~---l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P 303 (436)
...++-+.. ..... .+-|=+-.|+ +.+.+..... .+..-|-||.+++.+-
T Consensus 165 ~~el~~i~~aa~~a~~~-GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~A 218 (234)
T cd00003 165 EAELERIAKAAKLAREL-GLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRA 218 (234)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHH
Confidence 000222211 12222 6666666676 7787777766 6788888998887654
No 453
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=85.06 E-value=2.2 Score=41.59 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=59.0
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
+++..++.|+++|.|-....+.+|. ++++..+...+ ++||..===|-|+.++.++...|||+|.+=-
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs------------~e~L~~v~~~v-~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~ 137 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGS------------FEDLRAVRAAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIV 137 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCC------------HHHHHHHHHhc-CCCeeeccCCCCHHHHHHHHHcCcccHHHHH
Confidence 4667788999999997666555552 77777776665 9999988889999999999999999998766
Q ss_pred HHHhCCc
Q 013789 298 AAYQNPW 304 (436)
Q Consensus 298 a~l~~P~ 304 (436)
++|.+-.
T Consensus 138 ~~L~~~~ 144 (254)
T COG0134 138 AALDDEQ 144 (254)
T ss_pred HhcCHHH
Confidence 6665553
No 454
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=85.00 E-value=43 Score=33.24 Aligned_cols=200 Identities=13% Similarity=0.088 Sum_probs=110.0
Q ss_pred cEEEcCCC---CCChHHHHHHHH---HcCCCcEEEeccccchhhhhcccc---hhhhhccCCCCCcEEEEEcCCCHHHHH
Q 013789 70 WFSVAPMM---DWTDNHYRTLAR---LISKHAWLYTEMLAAETIIYQQGN---LDRFLAFSPEQHPIVLQIGGSNLDNLA 140 (436)
Q Consensus 70 ~iilAPMa---gvtd~~fr~~~~---~~Gg~gl~~temv~~~~l~~~~~~---~~~~~~~~~~~~pi~vQL~g~~p~~~~ 140 (436)
+.++.|+. .+....+++++. ..|-.|+++.+...--......++ ++...+......|+++++.+++.++..
T Consensus 6 ~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai 85 (294)
T TIGR02313 6 APLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETL 85 (294)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHH
Confidence 34566774 255566666653 334345555443322211111111 112222334567999999999999999
Q ss_pred HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhcc-CCcEEEEe---ccCCCCCCcHHHHHH
Q 013789 141 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKC---RIGVDDHDSYNQLCD 216 (436)
Q Consensus 141 ~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~-~iPvsvKi---R~G~~~~~~~~~~~~ 216 (436)
+.++.+++.|+|++-+-. |.-. . ...+-+.+-.++|.+++ ++||.+=- +.|.+- +.+.
T Consensus 86 ~~a~~A~~~Gad~v~v~p--P~y~-------~----~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l--~~~~--- 147 (294)
T TIGR02313 86 ELTKFAEEAGADAAMVIV--PYYN-------K----PNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEI--APKT--- 147 (294)
T ss_pred HHHHHHHHcCCCEEEEcC--ccCC-------C----CCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCC--CHHH---
Confidence 999999999999987653 3311 0 23466788888888888 89987753 223222 2222
Q ss_pred HHHHHhhc-CCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHHHcCCCeee
Q 013789 217 FIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVM 294 (436)
Q Consensus 217 ~la~~~e~-~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIanGgI~s~~da~~~l~~Gad~Vm 294 (436)
+.++.++ -.+.+|--.. | +...+.++.+... ++ .|.+|. + ..+...+..||+|++
T Consensus 148 -l~~L~~~~pnv~giK~ss------~------------d~~~~~~~~~~~~~~~-~v~~G~--d-~~~~~~l~~Ga~G~i 204 (294)
T TIGR02313 148 -MARLRKDCPNIVGAKESN------K------------DFEHLNHLFLEAGRDF-LLFCGI--E-LLCLPMLAIGAAGSI 204 (294)
T ss_pred -HHHHHhhCCCEEEEEeCC------C------------CHHHHHHHHHhcCCCe-EEEEcc--h-HHHHHHHHCCCCEEE
Confidence 2334332 2233332211 1 1444445544332 44 345553 1 444556678999999
Q ss_pred ehHHHHhCCcchhhhhh
Q 013789 295 VGRAAYQNPWYTLGHVD 311 (436)
Q Consensus 295 iGRa~l~~P~lf~~~~~ 311 (436)
.|.+-+ .|.++.+..+
T Consensus 205 s~~~n~-~P~~~~~l~~ 220 (294)
T TIGR02313 205 AATANV-EPKEVAELCE 220 (294)
T ss_pred ecHHhh-CHHHHHHHHH
Confidence 998753 4665443333
No 455
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=84.96 E-value=37 Score=32.92 Aligned_cols=130 Identities=11% Similarity=0.148 Sum_probs=75.4
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEecc-
Q 013789 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI- 203 (436)
Q Consensus 125 ~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~- 203 (436)
-|+..-+.+.+++.. +.++...+.||..+-+..| . .+++.-.+.++++++.++-.+.+.+..
T Consensus 73 v~~~~~~~~~~~~~~-~~~~~~~~~Gf~~~KiKvg----------~------~~~~~d~~~v~~vr~~~g~~~~l~vDaN 135 (263)
T cd03320 73 IPVNALLPAGDAAAL-GEAKAAYGGGYRTVKLKVG----------A------TSFEEDLARLRALREALPADAKLRLDAN 135 (263)
T ss_pred cceeEEecCCCHHHH-HHHHHHHhCCCCEEEEEEC----------C------CChHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 345555666666444 4455555679999877543 1 233445667778887765333333322
Q ss_pred -CCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q 013789 204 -GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 282 (436)
Q Consensus 204 -G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da 282 (436)
+|+ ..+..++ .+.+++.++.+|- . .+++.+++.+.++. .++||.+.=.+.+..++
T Consensus 136 ~~w~----~~~A~~~-~~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~---~~~PIa~dEs~~~~~~~ 191 (263)
T cd03320 136 GGWS----LEEALAF-LEALAAGRIEYIE----Q------------PLPPDDLAELRRLA---AGVPIALDESLRRLDDP 191 (263)
T ss_pred CCCC----HHHHHHH-HHhhcccCCceEE----C------------CCChHHHHHHHHhh---cCCCeeeCCccccccCH
Confidence 232 3344443 3455666666554 1 11222344444444 37999988788899999
Q ss_pred HHHHHc-CCCeeee
Q 013789 283 NAALRK-GAHHVMV 295 (436)
Q Consensus 283 ~~~l~~-Gad~Vmi 295 (436)
.++++. .+|.|++
T Consensus 192 ~~~~~~~~~d~v~~ 205 (263)
T cd03320 192 LALAAAGALGALVL 205 (263)
T ss_pred HHHHhcCCCCEEEE
Confidence 999985 5777764
No 456
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=84.79 E-value=30 Score=36.15 Aligned_cols=195 Identities=13% Similarity=0.178 Sum_probs=106.7
Q ss_pred CCCCCChHHHHHHHH--HcCCCcEEE-eccccchhhhhcccchhhhhc----c-CCC--CCcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDRFLA----F-SPE--QHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~~--~~Gg~gl~~-temv~~~~l~~~~~~~~~~~~----~-~~~--~~pi~vQL~g~~p~~~~~aA~ 144 (436)
|-.|.|..+++.++. ..||++++= -|.+.......-.+..+...+ . .++ ..-..+||.+. ++++.+-++
T Consensus 152 P~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~ 230 (406)
T cd08207 152 PSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITDD-IDEMRRNHD 230 (406)
T ss_pred cccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-HHHHHHHHH
Confidence 667899999999984 457777642 111111111110111111111 1 112 23478999986 999999999
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCC-------CCcHHHHHHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-------HDSYNQLCDF 217 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~-------~~~~~~~~~~ 217 (436)
++.++|.+.+-+|.. . +|- ..++.+++..++||-. .|.++-. .-+. ..
T Consensus 231 ~~~~~G~~~~mv~~~-----~-----~G~----------~~l~~l~~~~~l~Iha-Hra~~ga~~r~p~~Gis~----~v 285 (406)
T cd08207 231 LVVEAGGTCVMVSLN-----S-----VGL----------SGLAALRRHSQLPIHG-HRNGWGMLTRSPALGISF----QA 285 (406)
T ss_pred HHHHhCCCeEEEecc-----c-----cch----------HHHHHHHhcCCceEEE-CCCcceecccCCCCCCcH----HH
Confidence 999999998888753 1 121 1244455556777654 3443321 1112 12
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-----CCcEEEEeCCCCCHHHHHHHHH-cC-C
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-----PDLTFTLNGGINTVDEVNAALR-KG-A 290 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-----~~iPVIanGgI~s~~da~~~l~-~G-a 290 (436)
+.++..-+|+|.+++.+--. .....+.. .......+.+.. +-.|| .+||+ ++..+.+.++ .| -
T Consensus 286 l~kl~RLaGaD~~~~~~~~G---kf~~~~~~-----~~~~~~~~~~p~~~~~k~~~Pv-~sgG~-~~~~vp~~~~~~G~~ 355 (406)
T cd08207 286 YQKLWRLAGVDHLHVNGLAS---KFWESDDS-----VIESARACLTPLGGPDDAAMPV-FSSGQ-WGGQAPPTYRRLGSV 355 (406)
T ss_pred HHHHHHHcCCCccccCCCcC---CcCCCcHH-----HHHHHHHHhCchhccCCCeeEe-ccCCC-CHhHHHHHHHHhCCC
Confidence 45666779999998853211 11100000 011112222211 12344 46666 6788888887 88 5
Q ss_pred Ceeee-hHHHHhCCcc
Q 013789 291 HHVMV-GRAAYQNPWY 305 (436)
Q Consensus 291 d~Vmi-GRa~l~~P~l 305 (436)
|.|.. |-|+++.|+=
T Consensus 356 Dvi~~aGGGi~gHP~G 371 (406)
T cd08207 356 DLLYLAGGGIMAHPDG 371 (406)
T ss_pred ceEEecCCceecCCCC
Confidence 76654 9999999985
No 457
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=84.50 E-value=3.2 Score=41.01 Aligned_cols=84 Identities=8% Similarity=-0.043 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhcC-CccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEE-eCCCCCHHHHHHHH-
Q 013789 211 YNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAAL- 286 (436)
Q Consensus 211 ~~~~~~~la~~~e~~-Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIa-nGgI~s~~da~~~l- 286 (436)
.+.+.+.+..++ +. |++.|.+.|-+....-++.. .+.+.+...++.. .++|||+ .|+ .+.+++.++.
T Consensus 20 ~~~~~~~i~~l~-~~~Gv~gi~~~GstGE~~~Lt~~-------Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai~~a~ 90 (288)
T cd00954 20 EDVLRAIVDYLI-EKQGVDGLYVNGSTGEGFLLSVE-------ERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQELAK 90 (288)
T ss_pred HHHHHHHHHHHH-hcCCCCEEEECcCCcCcccCCHH-------HHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHHHHHH
Confidence 344444444444 47 99999998876432222211 1233344344432 2589886 444 4444444333
Q ss_pred ---HcCCCeeeehHHHHhCC
Q 013789 287 ---RKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 287 ---~~Gad~VmiGRa~l~~P 303 (436)
+.|||+||+-...+..|
T Consensus 91 ~a~~~Gad~v~~~~P~y~~~ 110 (288)
T cd00954 91 HAEELGYDAISAITPFYYKF 110 (288)
T ss_pred HHHHcCCCEEEEeCCCCCCC
Confidence 38999999988877665
No 458
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=84.39 E-value=5.4 Score=39.61 Aligned_cols=85 Identities=13% Similarity=0.025 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhcCC-ccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEEEe-CCCCCHHHHHHHH-
Q 013789 211 YNQLCDFIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLN-GGINTVDEVNAAL- 286 (436)
Q Consensus 211 ~~~~~~~la~~~e~~G-vd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVIan-GgI~s~~da~~~l- 286 (436)
.+.+.+.+. .+.+.| ++.|.+.|-+.....++..+ +.+.+...++... ++||++. |+..+ +++.+..
T Consensus 20 ~~~~~~~i~-~~i~~G~v~gi~~~GstGE~~~Lt~eE-------r~~~~~~~~~~~~~~~pvi~gv~~~~t-~~~i~la~ 90 (290)
T TIGR00683 20 EKGLRQIIR-HNIDKMKVDGLYVGGSTGENFMLSTEE-------KKEIFRIAKDEAKDQIALIAQVGSVNL-KEAVELGK 90 (290)
T ss_pred HHHHHHHHH-HHHhCCCcCEEEECCcccccccCCHHH-------HHHHHHHHHHHhCCCCcEEEecCCCCH-HHHHHHHH
Confidence 344444443 344589 99999988764322222211 1333333444332 6898755 55544 4444333
Q ss_pred ---HcCCCeeeehHHHHhCCc
Q 013789 287 ---RKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 287 ---~~Gad~VmiGRa~l~~P~ 304 (436)
+.|||+||+....+..|.
T Consensus 91 ~a~~~Gad~v~v~~P~y~~~~ 111 (290)
T TIGR00683 91 YATELGYDCLSAVTPFYYKFS 111 (290)
T ss_pred HHHHhCCCEEEEeCCcCCCCC
Confidence 389999999888777664
No 459
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.36 E-value=8.5 Score=38.71 Aligned_cols=92 Identities=11% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCCcEEEEEc-C-CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEE
Q 013789 123 EQHPIVLQIG-G-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (436)
Q Consensus 123 ~~~pi~vQL~-g-~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvK 200 (436)
.+.|+.|=+- | .+.+...+.++.++++|+|.|.+|..... +.|.+.. .++ +.+..+++++++||..
T Consensus 132 ~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~------~~y~g~~-~~~----~~i~~ik~~~~iPVi~- 199 (312)
T PRK10550 132 AHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE------DGYRAEH-INW----QAIGEIRQRLTIPVIA- 199 (312)
T ss_pred CCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc------cCCCCCc-ccH----HHHHHHHhhcCCcEEE-
Confidence 3578888864 3 34455788999999999999999965432 2233211 134 4555666667888744
Q ss_pred eccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccC
Q 013789 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235 (436)
Q Consensus 201 iR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgr 235 (436)
.| +..+.++.. ++++..|+|.|-+ ||
T Consensus 200 --nG--dI~t~~da~----~~l~~~g~DgVmi-GR 225 (312)
T PRK10550 200 --NG--EIWDWQSAQ----QCMAITGCDAVMI-GR 225 (312)
T ss_pred --eC--CcCCHHHHH----HHHhccCCCEEEE-cH
Confidence 22 223444443 3456789998876 44
No 460
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=84.34 E-value=2.7 Score=42.67 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=59.0
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeehH
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiGR 297 (436)
+++..++.|+++|.|-.-....+|. ++++.++.+..+++||+--==|-|+-++.++...|||+|.+==
T Consensus 144 iA~~Ye~~GA~aISVLTd~~~F~Gs------------~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIa 211 (338)
T PLN02460 144 IAQAYEKGGAACLSVLTDEKYFQGS------------FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIA 211 (338)
T ss_pred HHHHHHhCCCcEEEEecCcCcCCCC------------HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHH
Confidence 4667788999999997555444442 7777777665248999998889999999999999999998877
Q ss_pred HHHhCCcc
Q 013789 298 AAYQNPWY 305 (436)
Q Consensus 298 a~l~~P~l 305 (436)
++|.+-.+
T Consensus 212 aiL~~~~L 219 (338)
T PLN02460 212 AVLPDLDI 219 (338)
T ss_pred HhCCHHHH
Confidence 77654443
No 461
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=84.24 E-value=1.9 Score=44.30 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=36.3
Q ss_pred ccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 253 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 253 ~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
..|+.+..+.+.. +.|||.-| |.+++|+.++.+.|||+|.++
T Consensus 223 ~~w~~i~~ir~~~-~~pviiKg-V~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 223 FNWQDLRWLRDLW-PHKLLVKG-IVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CCHHHHHHHHHhC-CCCEEEec-CCCHHHHHHHHHCCcCEEEEC
Confidence 4588888888876 78988886 999999999999999999874
No 462
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=84.17 E-value=26 Score=36.44 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=81.0
Q ss_pred EEEEcCCC--HHHHH-HHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccC
Q 013789 128 VLQIGGSN--LDNLA-KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 204 (436)
Q Consensus 128 ~vQL~g~~--p~~~~-~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G 204 (436)
+.||.|-. +++.+ ..++.+.+.|.|.+-+= |+ +||++-+...+++++++- .-+..-+.--
T Consensus 86 GQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiF-----------DA-----lND~RNl~~ai~a~kk~G-~h~q~~i~YT 148 (472)
T COG5016 86 GQNLVGYRHYADDVVEKFVEKAAENGIDVFRIF-----------DA-----LNDVRNLKTAIKAAKKHG-AHVQGTISYT 148 (472)
T ss_pred cCccccccCCchHHHHHHHHHHHhcCCcEEEec-----------hh-----ccchhHHHHHHHHHHhcC-ceeEEEEEec
Confidence 34555533 45544 46778888898876431 23 588888888888887752 2222222221
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEe----CCCCCHH
Q 013789 205 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN----GGINTVD 280 (436)
Q Consensus 205 ~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIan----GgI~s~~ 280 (436)
.....+++...++ ++.+.+.|+|.|++-.-. |... |...+++|..+++.+ ++||-.- -|+. .-
T Consensus 149 ~sPvHt~e~yv~~-akel~~~g~DSIciKDma----Gllt------P~~ayelVk~iK~~~-~~pv~lHtH~TsG~a-~m 215 (472)
T COG5016 149 TSPVHTLEYYVEL-AKELLEMGVDSICIKDMA----GLLT------PYEAYELVKAIKKEL-PVPVELHTHATSGMA-EM 215 (472)
T ss_pred cCCcccHHHHHHH-HHHHHHcCCCEEEeeccc----ccCC------hHHHHHHHHHHHHhc-CCeeEEecccccchH-HH
Confidence 1223445444443 455667999999985332 3221 223488888888876 7998764 3442 34
Q ss_pred HHHHHHHcCCCeee
Q 013789 281 EVNAALRKGAHHVM 294 (436)
Q Consensus 281 da~~~l~~Gad~Vm 294 (436)
...++.+.|+|++=
T Consensus 216 ~ylkAvEAGvD~iD 229 (472)
T COG5016 216 TYLKAVEAGVDGID 229 (472)
T ss_pred HHHHHHHhCcchhh
Confidence 45566678998764
No 463
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=84.14 E-value=8.4 Score=36.03 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=55.1
Q ss_pred CCcE--EEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 013789 124 QHPI--VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (436)
Q Consensus 124 ~~pi--~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi 201 (436)
+.|+ ++....-+++.+.++++++.++|+|.|-..-|.+.. | ..++-+..+.+.++ .++.||+
T Consensus 116 g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~--------~----at~~~v~~~~~~~~----~~v~ik~ 179 (203)
T cd00959 116 GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPG--------G----ATVEDVKLMKEAVG----GRVGVKA 179 (203)
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCC--------C----CCHHHHHHHHHHhC----CCceEEE
Confidence 4555 555555678999999999999999999988776531 2 34444444444443 5788899
Q ss_pred ccCCCCCCcHHHHHHHHHHHhhcCCccEE
Q 013789 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHF 230 (436)
Q Consensus 202 R~G~~~~~~~~~~~~~la~~~e~~Gvd~I 230 (436)
.-|.. +.++..+++ .+|++.|
T Consensus 180 aGGik---t~~~~l~~~-----~~g~~ri 200 (203)
T cd00959 180 AGGIR---TLEDALAMI-----EAGATRI 200 (203)
T ss_pred eCCCC---CHHHHHHHH-----HhChhhc
Confidence 99887 344544433 3677654
No 464
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=83.82 E-value=32 Score=35.51 Aligned_cols=197 Identities=13% Similarity=0.097 Sum_probs=107.4
Q ss_pred cEEEc---CCCCCChHHHHHHHH--HcCCCcEEEeccccchhhhhccc------chhhhh----cc---CCCCCcEEEEE
Q 013789 70 WFSVA---PMMDWTDNHYRTLAR--LISKHAWLYTEMLAAETIIYQQG------NLDRFL----AF---SPEQHPIVLQI 131 (436)
Q Consensus 70 ~iilA---PMagvtd~~fr~~~~--~~Gg~gl~~temv~~~~l~~~~~------~~~~~~----~~---~~~~~pi~vQL 131 (436)
|++.+ |+.|.|..+++.+|. ..||.+++ ..+....+.. .+.... +. +-+..-..+||
T Consensus 128 Pl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~I-----KDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 202 (366)
T cd08148 128 PLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLI-----KDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNV 202 (366)
T ss_pred ceeEeecccccCCCHHHHHHHHHHHHhCCCCcc-----ccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEc
Confidence 45444 899999999999984 55777764 3222221111 111111 11 11223478999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh--ccCCcEEEEeccCCCCC-
Q 013789 132 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDDH- 208 (436)
Q Consensus 132 ~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~--~~~iPvsvKiR~G~~~~- 208 (436)
.+.. +++.+=++++.++|.+.+-+|.. . +| ...++++++ ..++||-. .|.++-..
T Consensus 203 T~~~-~em~~ra~~~~~~G~~~~mv~~~-----~-----~G----------~~~l~~l~~~~~~~l~Iha-HrA~~ga~~ 260 (366)
T cd08148 203 TAGT-FEIIERAERALELGANMLMVDVL-----T-----AG----------FSALQALAEDFEIDLPIHV-HRAMHGAVT 260 (366)
T ss_pred cCCH-HHHHHHHHHHHHhCCCEEEEecc-----c-----cc----------hHHHHHHHHhCcCCcEEEe-ccccccccc
Confidence 9765 88889999999999988777741 1 12 112344444 24666644 34433210
Q ss_pred ---C-cHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC----CCcEEEEeCCCCCHH
Q 013789 209 ---D-SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVD 280 (436)
Q Consensus 209 ---~-~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~----~~iPVIanGgI~s~~ 280 (436)
. -+.- -.+.++..-+|+|.+++-+--. .....+. ........+.+.. +-.|| .+||+ ++.
T Consensus 261 ~~~~~G~~~--~~l~kl~RLaGaD~~~~~t~~G---k~~~~~~-----~~~~~~~~~~~~~~~~k~~~Pv-~sgG~-~~~ 328 (366)
T cd08148 261 RSKFHGISM--LVLAKLLRMAGGDFIHTGTVVG---KMALERE-----EALGIADALTDDWAGFKRVFPV-ASGGI-HPG 328 (366)
T ss_pred cCCCCCcCH--HHHHHHHHHcCCCccccCCccc---CcCCCHH-----HHHHHHHHHhCcccCCCCceEe-ccCCC-Chh
Confidence 0 0111 2346666779999998743211 1111000 0011111222211 12454 45666 778
Q ss_pred HHHHHHH-cCCCee-eehHHHHhCCcc
Q 013789 281 EVNAALR-KGAHHV-MVGRAAYQNPWY 305 (436)
Q Consensus 281 da~~~l~-~Gad~V-miGRa~l~~P~l 305 (436)
.+.++++ .|-|.| ++|-|+++.|+=
T Consensus 329 ~vp~~~~~~G~Dvil~~GGgi~gHp~G 355 (366)
T cd08148 329 LVPGILRDFGIDVILQAGGGIHGHPDG 355 (366)
T ss_pred HHHHHHHHhCCcEEEEcCccccCCCCC
Confidence 8888887 898844 568889999985
No 465
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=83.68 E-value=12 Score=36.42 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=63.5
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCC
Q 013789 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251 (436)
Q Consensus 172 G~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~ 251 (436)
|+.++++.+++. ++. .++.||-+|.-... +.+++.-.+.+ +...|-+.|.+.=|-... |.+ --
T Consensus 99 gArn~rn~~LL~----a~g-~t~kpV~lKrG~~~----t~~e~l~aaey-i~~~Gn~~viLcERG~tf-~y~------r~ 161 (258)
T TIGR01362 99 PAFLCRQTDLLV----AAA-KTGRIVNVKKGQFL----SPWDMKNVVEK-VLSTGNKNILLCERGTSF-GYN------NL 161 (258)
T ss_pred CchhcchHHHHH----HHh-ccCCeEEecCCCcC----CHHHHHHHHHH-HHHcCCCcEEEEeCCCCc-CCC------Cc
Confidence 455556655444 443 35899999977653 33444443333 345888888886442211 211 11
Q ss_pred CccHHHHHHHHhcCCCcEEEEe---------------CCCCCH--HHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 252 PLKYEYYYALLRDFPDLTFTLN---------------GGINTV--DEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 252 ~~~~~~v~~l~~~~~~iPVIan---------------GgI~s~--~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.+++..+..+.+ . ++|||.- ||.++. .-+++++..||||+||=. .-||.
T Consensus 162 ~~D~~~ip~~k~-~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv--HpdP~ 227 (258)
T TIGR01362 162 VVDMRSLPIMRE-L-GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET--HPDPK 227 (258)
T ss_pred ccchhhhHHHHh-c-CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe--CCCcc
Confidence 234555555544 3 7899863 454442 334456668999999863 44554
No 466
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=83.61 E-value=76 Score=35.03 Aligned_cols=185 Identities=10% Similarity=0.120 Sum_probs=94.6
Q ss_pred CCCCChHHHHHHHHHcCCCcEEEeccc--cchhhhhcccc-hhhhhccCCCCCcEEEEEcCC-CHHHHHHHHHHHHHCCC
Q 013789 76 MMDWTDNHYRTLARLISKHAWLYTEML--AAETIIYQQGN-LDRFLAFSPEQHPIVLQIGGS-NLDNLAKATELANAYNY 151 (436)
Q Consensus 76 Magvtd~~fr~~~~~~Gg~gl~~temv--~~~~l~~~~~~-~~~~~~~~~~~~pi~vQL~g~-~p~~~~~aA~~~~~~G~ 151 (436)
.+|.|+..-..++.+.| ++.+.-=+. ++..+.. +. ...+.+.-+....-.|-+|.+ +++ +..+++++.+.
T Consensus 7 ICGit~~eda~~a~~~g-aD~iGfIf~~~SpR~V~~--~~~a~~i~~~l~~~~v~~VgVfv~~~~~---~i~~~~~~~~l 80 (610)
T PRK13803 7 ICGIKDSALISKAVDML-PDFIGFIFYEKSPRFVGN--KFLAPNLEKAIRKAGGRPVGVFVNESAK---AMLKFSKKNGI 80 (610)
T ss_pred ECCCCcHHHHHHHHHcC-CCEEEEEecCCCCCCCCH--HHHHHHHHHhCCCCCCCEEEEEeCCCHH---HHHHHHHhcCC
Confidence 36889888888888876 554322111 2211111 11 122222111112224666654 444 45556678899
Q ss_pred CEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEE
Q 013789 152 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 231 (436)
Q Consensus 152 d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~ 231 (436)
|.|+||...+. ..++.+..+. + .++++.--++.. +......+ ... + .-+|++.
T Consensus 81 d~vQLHG~e~~--------------~~~~~~~~l~----~-~~~~iika~~v~--~~~~~~~~----~~~-~-~~~d~~L 133 (610)
T PRK13803 81 DFVQLHGAESK--------------AEPAYCQRIY----K-KSIKKIGSFLID--DAFGFEVL----DEY-R-DHVKYFL 133 (610)
T ss_pred CEEEECCCCCc--------------ccHHHHHHhh----h-cCCcEEEEEEeC--ChhhHHHH----Hhh-h-ccCCEEE
Confidence 99999953221 1133333332 2 124543323432 21112221 111 1 2378888
Q ss_pred EccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHH-cCCC--eeeehHHHHhCCc
Q 013789 232 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH--HVMVGRAAYQNPW 304 (436)
Q Consensus 232 vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~-~Gad--~VmiGRa~l~~P~ 304 (436)
+......++|.+- ..+|+.+..+ ..+.|++.+||| +++.+.++++ .... +|=+-+|.-..|-
T Consensus 134 lDs~~~~~GGtG~-------~fdw~~~~~~---~~~~p~iLAGGL-~peNV~~ai~~~~p~~~gVDvsSGvE~~pG 198 (610)
T PRK13803 134 FDNKTKIYGGSGK-------SFDWEKFYNY---NFKFPFFLSGGL-SPTNFDRIINLTHPQILGIDVSSGFEDSPG 198 (610)
T ss_pred EcCCCCCCCCCCC-------ccChHHhhhc---ccCCcEEEEeCC-CHHHHHHHHhhhCCCceEEEccCcccCCCC
Confidence 8765443344321 2236655332 125699999999 7889999997 4555 7777777665554
No 467
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=83.60 E-value=10 Score=35.07 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCC
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 290 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Ga 290 (436)
.++..+. ++.+.+.|++.|.+.-++. ...+.+..+.+.+++ ..|+.|.|.+.+++..+++.||
T Consensus 15 ~~~~~~~-~~~l~~~G~~~vev~~~~~---------------~~~~~i~~l~~~~~~-~~iGag~v~~~~~~~~a~~~Ga 77 (190)
T cd00452 15 AEDALAL-AEALIEGGIRAIEITLRTP---------------GALEAIRALRKEFPE-ALIGAGTVLTPEQADAAIAAGA 77 (190)
T ss_pred HHHHHHH-HHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCC
Confidence 3444443 3344569999999864432 015567777777654 4689999999999999999999
Q ss_pred Ceeeeh
Q 013789 291 HHVMVG 296 (436)
Q Consensus 291 d~VmiG 296 (436)
|+++.+
T Consensus 78 ~~i~~p 83 (190)
T cd00452 78 QFIVSP 83 (190)
T ss_pred CEEEcC
Confidence 999876
No 468
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=83.56 E-value=4.8 Score=42.16 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=56.9
Q ss_pred CcEEEEEcCCCH---HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 013789 125 HPIVLQIGGSNL---DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201 (436)
Q Consensus 125 ~pi~vQL~g~~p---~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi 201 (436)
.+..||++|.+| +++.+..+.+.+.|++.|+||. + |--|.++++++.++..+ |+-...+-
T Consensus 110 ~~~aIq~tGGEPTvr~DL~eiv~~a~e~g~~hVqinT------n------GirlA~~~~~~~~l~~a-----g~~tvYls 172 (475)
T COG1964 110 GANAVQFTGGEPTLRDDLIEIIKIAREEGYDHVQLNT------N------GIRLAFDPEYVKKLREA-----GVNTVYLS 172 (475)
T ss_pred CCceeEecCCCccchhhHHHHHHHHhhcCccEEEEcc------C------ceeeccCHHHHHHHHhc-----CCcEEEEe
Confidence 349999999987 8999999999999999999993 1 44455676665555443 33333444
Q ss_pred ccCCCCCCc---HHHHHHHHHHHhhcCCccEEEEc
Q 013789 202 RIGVDDHDS---YNQLCDFIYKVSSLSPTRHFIIH 233 (436)
Q Consensus 202 R~G~~~~~~---~~~~~~~la~~~e~~Gvd~I~vh 233 (436)
.-|.+.... ..++-. +..-+.++|.+.+.+-
T Consensus 173 FDG~~e~~~~~~~~eIk~-alen~r~~g~~svVLV 206 (475)
T COG1964 173 FDGVTPKTNWKNHWEIKQ-ALENCRKAGLPSVVLV 206 (475)
T ss_pred cCCCCCCchhhHhhhhHH-HHHHHHhcCCCcEEEE
Confidence 445554322 222222 2333455787755554
No 469
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=83.47 E-value=37 Score=32.94 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=75.6
Q ss_pred CCcEEEEEcCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCc--EEEE
Q 013789 124 QHPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP--VSVK 200 (436)
Q Consensus 124 ~~pi~vQL~g~~-p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iP--vsvK 200 (436)
.+++++=+--+| |.....+++.+.++|+|.+.+|. |++ .+.+...+++..+.-... ||+-
T Consensus 62 ~~~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~------------~~G-----~~~~~~~~e~~~~~~~~vl~vT~l 124 (240)
T COG0284 62 GKKVFLDLKLADIPNTVALAAKAAADLGADAVTVHA------------FGG-----FDMLRAAKEALEAGGPFVLAVTSL 124 (240)
T ss_pred CCceEEeeecccchHHHHHHHHHhhhcCCcEEEEeC------------cCC-----HHHHHHHHHHHhhcCceEEEEEeC
Confidence 347888776555 67777888888999999999983 121 123444444443321122 3332
Q ss_pred eccCCCC------CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEE----
Q 013789 201 CRIGVDD------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF---- 270 (436)
Q Consensus 201 iR~G~~~------~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPV---- 270 (436)
...+..+ .....+....+++....+|.|.+.+.+-. .+.+++... ++.++
T Consensus 125 ts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e------------------~~~ir~~~g--~~~~iltPG 184 (240)
T COG0284 125 TSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEE------------------VAAIREILG--PDFLILTPG 184 (240)
T ss_pred CCchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCHHH------------------HHHHHHhcC--CCcEEECCC
Confidence 2222210 11233333344556666788888764321 111222211 12211
Q ss_pred EEe-------CCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 271 TLN-------GGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 271 Ian-------GgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
|.. +++.++.+ +...|+|.+.+||+.+..+.
T Consensus 185 Ig~~~~~gdQ~~~~t~~~---A~~~Gad~ivVGR~I~~a~~ 222 (240)
T COG0284 185 IGAGSQGGDQGRVMTPGE---AVRAGADYIVVGRPITQAGD 222 (240)
T ss_pred cCcCcCCCCcccccCHHH---HHhcCCCEEEEChhhhcCCC
Confidence 222 34444444 45589999999999988765
No 470
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=83.47 E-value=3.3 Score=40.57 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEE
Q 013789 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 199 (436)
Q Consensus 134 ~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsv 199 (436)
.+.+...+-|+...+.|+|.||+|++.+. . ..++.+..+++.+++.+++||++
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~-------~------eE~~r~~~~v~~l~~~~~~plsI 74 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAV-------E------EEPETMEWLVETVQEVVDVPLCI 74 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCc-------h------hHHHHHHHHHHHHHHhCCCCEEE
Confidence 45666777777777889999999988321 1 45788999999998888999876
No 471
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=83.28 E-value=5.1 Score=42.97 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEE
Q 013789 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 200 (436)
Q Consensus 137 ~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvK 200 (436)
+.+.+-|....+.|+|.||||++...+ .++.+..+++++++.+++||++=
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p--------------~~~~v~~~V~~l~~~~~~pISID 214 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDD--------------DPDVVKEKVKTALDALDSPVIAD 214 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCC--------------cHHHHHHHHHHHHhhCCCcEEEe
Confidence 555666666677899999999876532 23468889999988878898773
No 472
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=83.25 E-value=4.2 Score=39.96 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCC-CcEEE-EeCCCCCHHHHHHHH--
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFT-LNGGINTVDEVNAAL-- 286 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~-~iPVI-anGgI~s~~da~~~l-- 286 (436)
.+.+.+.+.. +.+.|++.|.+-|-+.....++..+ +.+.+..+++... ++||+ +.|+- +.+++.+..
T Consensus 20 ~~~~~~~i~~-l~~~Gv~gl~v~GstGE~~~lt~~E-------r~~l~~~~~~~~~~~~~vi~gv~~~-~~~~~~~~a~~ 90 (284)
T cd00950 20 FDALERLIEF-QIENGTDGLVVCGTTGESPTLSDEE-------HEAVIEAVVEAVNGRVPVIAGTGSN-NTAEAIELTKR 90 (284)
T ss_pred HHHHHHHHHH-HHHcCCCEEEECCCCcchhhCCHHH-------HHHHHHHHHHHhCCCCcEEeccCCc-cHHHHHHHHHH
Confidence 4444454443 4459999999987664322222211 1333434444332 57876 44554 444444433
Q ss_pred --HcCCCeeeehHHHHhCC
Q 013789 287 --RKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 287 --~~Gad~VmiGRa~l~~P 303 (436)
+.|+|+||+....+..|
T Consensus 91 a~~~G~d~v~~~~P~~~~~ 109 (284)
T cd00950 91 AEKAGADAALVVTPYYNKP 109 (284)
T ss_pred HHHcCCCEEEEcccccCCC
Confidence 38999999998876554
No 473
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=83.24 E-value=24 Score=34.28 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=53.6
Q ss_pred CcEEEEEcCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe-c
Q 013789 125 HPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-R 202 (436)
Q Consensus 125 ~pi~vQL~g~~-p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi-R 202 (436)
+|+++|=.... ...+.++.+.+.++|||+|||..+-+..... . +...+..+.++.+.+.+ .|+.|+.-. .
T Consensus 3 ~~~~~~~~~~~~~~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~---~----~~~~~~~~~~~~~~l~~-~gl~i~~~~~~ 74 (279)
T TIGR00542 3 HPLGIYEKALPKGECWLERLQLAKTCGFDFVEMSVDETDDRLS---R----LDWSREQRLALVNAIIE-TGVRIPSMCLS 74 (279)
T ss_pred cccceehhhCCCCCCHHHHHHHHHHcCCCEEEEecCCccchhh---c----cCCCHHHHHHHHHHHHH-cCCCceeeecC
Confidence 34554443333 2446788889999999999996543221110 1 01234555555555543 466654322 1
Q ss_pred c----CCCCCCc--HH---HHHHHHHHHhhcCCccEEEEccCc
Q 013789 203 I----GVDDHDS--YN---QLCDFIYKVSSLSPTRHFIIHSRK 236 (436)
Q Consensus 203 ~----G~~~~~~--~~---~~~~~la~~~e~~Gvd~I~vhgrt 236 (436)
. .+...+. .. +..+...+++...|+..|.++++.
T Consensus 75 ~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~ 117 (279)
T TIGR00542 75 AHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYD 117 (279)
T ss_pred CCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcc
Confidence 1 1111111 11 112223445667899999988753
No 474
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=83.08 E-value=33 Score=31.87 Aligned_cols=113 Identities=14% Similarity=0.197 Sum_probs=60.5
Q ss_pred HHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhc-cCCcEEEEeccCCCCCCcHHHHHHHHHH
Q 013789 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYK 220 (436)
Q Consensus 142 aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~-~~iPvsvKiR~G~~~~~~~~~~~~~la~ 220 (436)
-++.+.+.|+|.|.+-+-.+++. . -+++.+.++.+.+... ..++|.+ .++.+++.+
T Consensus 11 d~~~a~~~Gvd~ig~i~~~~s~R-----~------v~~~~a~~l~~~~~~~~~~V~v~v--------n~~~~~i~~---- 67 (203)
T cd00405 11 DALAAAEAGADAIGFIFAPKSPR-----Y------VSPEQAREIVAALPPFVKRVGVFV--------NEDLEEILE---- 67 (203)
T ss_pred HHHHHHHcCCCEEEEecCCCCCC-----C------CCHHHHHHHHHhCCCCCcEEEEEe--------CCCHHHHHH----
Confidence 34556688999998875433321 1 2466667776665442 1223322 123444333
Q ss_pred HhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH--HHHcCCCeeee
Q 013789 221 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA--ALRKGAHHVMV 295 (436)
Q Consensus 221 ~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~--~l~~Gad~Vmi 295 (436)
++.+.|+|.|++||-+. .+.+..+.+.. ..++|-.=++.+..+... ....++|.+.+
T Consensus 68 ia~~~~~d~Vqlhg~e~-----------------~~~~~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~ 126 (203)
T cd00405 68 IAEELGLDVVQLHGDES-----------------PEYCAQLRARL-GLPVIKAIRVKDEEDLEKAAAYAGEVDAILL 126 (203)
T ss_pred HHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCChhhHHHhhhccccCCEEEE
Confidence 44578999999997431 23334444333 444553334445555443 33368999854
No 475
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=83.00 E-value=13 Score=36.42 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=63.0
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCC
Q 013789 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251 (436)
Q Consensus 172 G~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~ 251 (436)
|+.++++.+++. ++. .++.||-+|.-... +.+++.-.+.++ ...|-..|.+.=|-... |.. --
T Consensus 107 gArn~rn~~LL~----a~g-~t~kpV~lKrG~~~----t~~e~~~aaeyi-~~~Gn~~vilcERG~tf-~y~------r~ 169 (264)
T PRK05198 107 PAFLCRQTDLLV----AAA-KTGKVVNIKKGQFL----APWDMKNVVDKV-REAGNDKIILCERGTSF-GYN------NL 169 (264)
T ss_pred CchhcchHHHHH----HHh-ccCCeEEecCCCcC----CHHHHHHHHHHH-HHcCCCeEEEEeCCCCc-CCC------Ce
Confidence 555556665544 433 34899999977643 344444433344 35788888886553221 211 11
Q ss_pred CccHHHHHHHHhcCCCcEEEEe---------------CCCCCH--HHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 252 PLKYEYYYALLRDFPDLTFTLN---------------GGINTV--DEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 252 ~~~~~~v~~l~~~~~~iPVIan---------------GgI~s~--~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
.+++..++.+.+ . ++|||.- ||-++. .-+++++..||||+++=. .-||.
T Consensus 170 ~~D~~~vp~~k~-~-~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv--HpdP~ 235 (264)
T PRK05198 170 VVDMRGLPIMRE-T-GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET--HPDPD 235 (264)
T ss_pred eechhhhHHHhh-C-CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe--CCCcc
Confidence 233555554443 3 6899863 444432 334456668999999863 44554
No 476
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=82.97 E-value=65 Score=33.78 Aligned_cols=196 Identities=13% Similarity=0.154 Sum_probs=105.8
Q ss_pred CCCCCChHHHHHHHH--HcCCCcEEE-eccccchhhhhcccchhhhhc----c-CCC--CCcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDRFLA----F-SPE--QHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~~--~~Gg~gl~~-temv~~~~l~~~~~~~~~~~~----~-~~~--~~pi~vQL~g~~p~~~~~aA~ 144 (436)
|-.|.|..+++.++. ..||++++= -|.+..+....-.+......+ . .++ ..-..+||.+. ++++.+-++
T Consensus 153 P~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~~-~~em~~ra~ 231 (412)
T TIGR03326 153 PKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITAP-VREMERRAE 231 (412)
T ss_pred ccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEecCC-HHHHHHHHH
Confidence 667899999999984 457777652 122221111111111111111 0 112 23478999976 899999999
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh---ccCCcEEEEeccCCCCC----C-cHHHHHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDDH----D-SYNQLCD 216 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~---~~~iPvsvKiR~G~~~~----~-~~~~~~~ 216 (436)
++.++|.+.+-+|.. . +|- ..++.+++ ..++||-. .|.++-.. . -+.- .
T Consensus 232 ~~~~~G~~~~mv~~~-----~-----~G~----------~~l~~l~~~~~~~~l~ih~-Hra~~ga~~~~~~~Gis~--~ 288 (412)
T TIGR03326 232 LVADLGGQYVMVDVV-----V-----CGW----------SALQYIRELTEDLGLAIHA-HRAMHAAFTRNPKHGISM--F 288 (412)
T ss_pred HHHHhCCCeEEEEee-----c-----cch----------HHHHHHHHhhccCCeEEEE-cCCcccccccCCCCcCcH--H
Confidence 999999988777631 1 131 12344443 34677654 34333210 0 0111 1
Q ss_pred HHHHHhhcCCccEEEEccC-cccccCCCCCCCCCCCCccHHHHHHHHh-cC----CCcEEEEeCCCCCHHHHHHHHH-cC
Q 013789 217 FIYKVSSLSPTRHFIIHSR-KALLNGISPAENRTIPPLKYEYYYALLR-DF----PDLTFTLNGGINTVDEVNAALR-KG 289 (436)
Q Consensus 217 ~la~~~e~~Gvd~I~vhgr-t~~~~G~~~~~~~~i~~~~~~~v~~l~~-~~----~~iPVIanGgI~s~~da~~~l~-~G 289 (436)
.+.++..-+|+|.+++.+- -..+.+. ......+.+..+ .. +-.|| .+||+ ++..+.+.++ .|
T Consensus 289 vl~kl~RLaGaD~~~~~t~~~Gk~~~~---------~~~~~~~~~~~~~~~~~~k~~~Pv-~sGG~-~~~~vp~~~~~~G 357 (412)
T TIGR03326 289 ALAKLYRLIGVDQLHTGTAGVGKLEGG---------KEDTKQINDFLRQKWHHIKPVFPV-SSGGL-HPGLVPPLIDALG 357 (412)
T ss_pred HHHHHHHHcCCCeeeeCCCccCCCCCC---------HHHHHHHHHHHhCcccCCCCceEe-cCCCC-ChhHHHHHHHhcC
Confidence 2466667799999998543 1111111 000111111111 11 12454 45666 6788888887 89
Q ss_pred CCe-eeehHHHHhCCcc
Q 013789 290 AHH-VMVGRAAYQNPWY 305 (436)
Q Consensus 290 ad~-VmiGRa~l~~P~l 305 (436)
-|. .++|-|+++.|+=
T Consensus 358 ~Dvil~~GGGi~gHp~G 374 (412)
T TIGR03326 358 KDLVIQAGGGVHGHPDG 374 (412)
T ss_pred CceEEecCCccccCCCC
Confidence 884 4578999999985
No 477
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=82.89 E-value=28 Score=36.42 Aligned_cols=198 Identities=13% Similarity=0.091 Sum_probs=104.3
Q ss_pred CCCCCChHHHHHHHH--HcCCCcEEE-eccccchhhhhcccchhhhhc-------cCCCCCcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDRFLA-------FSPEQHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~~--~~Gg~gl~~-temv~~~~l~~~~~~~~~~~~-------~~~~~~pi~vQL~g~~p~~~~~aA~ 144 (436)
|-.|.+...++.++. ..||++++= -|.+.......-.+......+ -+-+..-..+||.+.. +++.+=|+
T Consensus 148 p~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~-~em~~ra~ 226 (407)
T TIGR03332 148 GMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTGRT-FDLKDKAK 226 (407)
T ss_pred CccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCCCH-HHHHHHHH
Confidence 667888888887763 457777642 111111111100001111110 1112344889998764 46888899
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh--ccCCcEEEEeccCCCCCC-----cHHHHHHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDDHD-----SYNQLCDF 217 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~--~~~iPvsvKiR~G~~~~~-----~~~~~~~~ 217 (436)
++.+.|...+-+|.. . +| ...++.+++ ..++|| .-.|.++-... -+. ..-.
T Consensus 227 ~a~~~G~~~~mv~~~-----~-----~G----------~~~~~~l~~~~~~~lpi-haHra~~ga~~r~~~~Gis-~~~~ 284 (407)
T TIGR03332 227 RAAELGADVLLFNVF-----A-----YG----------LDVLQSLAEDDEIPVPI-MAHPAVSGAYTSSPFYGFS-HSLL 284 (407)
T ss_pred HHHHhCCCEEEEecc-----c-----cC----------hHHHHHHHhcCCCCcEE-EEecCcccccccCCCCccc-HHHH
Confidence 999999998877742 1 12 112344444 456777 44555443210 111 1123
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC----CCcEEEEeCCCCCHHHHHHHHH-cCCCe
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALR-KGAHH 292 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~----~~iPVIanGgI~s~~da~~~l~-~Gad~ 292 (436)
+.++..-+|+|.+++.+--..+.+. . .........+.+.. +-.|| .+||+ ++..+.++++ .|-|.
T Consensus 285 l~kl~RLaGaD~~~~~~~~Gk~~~~---~-----~~~~~~~~~~~~p~~~~k~~~Pv-~sGG~-~~~~~p~~~~~~G~Dv 354 (407)
T TIGR03332 285 LGKLLRYAGADFSLFPSPYGSVALE---R-----EDALAISKELTEDDAPFKKTFAV-PSAGI-HPGMVPLIMRDFGIDH 354 (407)
T ss_pred HHHHHHhcCcCccccCCcccCCCCC---H-----HHHHHHHHHHhccccCCCccEEe-cCCCc-ChhHHHHHHHHhCCce
Confidence 4667777999999874321111111 0 00012222222211 12344 56777 6788888887 89874
Q ss_pred -eeehHHHHhCCcc
Q 013789 293 -VMVGRAAYQNPWY 305 (436)
Q Consensus 293 -VmiGRa~l~~P~l 305 (436)
+++|-|+++.|+=
T Consensus 355 il~~GGGi~gHP~G 368 (407)
T TIGR03332 355 IINAGGGIHGHPNG 368 (407)
T ss_pred EEecCcccccCCCC
Confidence 4678899999985
No 478
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=82.82 E-value=31 Score=35.95 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=105.6
Q ss_pred CCCCCChHHHHHHHH--HcCCCcEEE-eccccchhhhhcccchhhhhc-----cCCCC--CcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQ--HPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~~--~~Gg~gl~~-temv~~~~l~~~~~~~~~~~~-----~~~~~--~pi~vQL~g~~p~~~~~aA~ 144 (436)
|-.|.|...+..++. ..||.+++= -|.+.......-.+......+ -.+++ .-..+||.+. ++++.+=++
T Consensus 133 P~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~-~~em~~ra~ 211 (391)
T cd08209 133 GVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTGP-VFTLKEKAR 211 (391)
T ss_pred cccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC-HHHHHHHHH
Confidence 778999999999984 457777642 112211111110111111111 11122 3478999975 799999999
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh--ccCCcEEEEeccCCCCC----C-cHHHHHHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDDH----D-SYNQLCDF 217 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~--~~~iPvsvKiR~G~~~~----~-~~~~~~~~ 217 (436)
++.++|.+.+-+|.. . +| ...++++++ ..++||-. .|.++-.. . -+. ..-.
T Consensus 212 ~~~~~G~~~~mv~~~-----~-----~G----------~~~l~~l~~~~~~~lpIha-Hra~~ga~~~~~~~Gis-~~~~ 269 (391)
T cd08209 212 RLVEAGANALLFNVF-----A-----YG----------LDVLEALASDPEINVPIFA-HPAFAGALYGSPDYGIA-ASVL 269 (391)
T ss_pred HHHHhCCCEEEEecc-----c-----cc----------hHHHHHHHhcCcCCcEEEe-cCCcccccccCCCCCCc-HHHH
Confidence 999999998877741 1 23 122344444 45666644 33333210 0 011 1112
Q ss_pred HHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhc--C-CCcEEEEeCCCCCHHHHHHHHH-cCCCe-
Q 013789 218 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--F-PDLTFTLNGGINTVDEVNAALR-KGAHH- 292 (436)
Q Consensus 218 la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~--~-~~iPVIanGgI~s~~da~~~l~-~Gad~- 292 (436)
+.++..-+|+|.+++.+--..+.+. .. ........+.+. . +-.|| .+||+ ++..+.+.++ .|-|.
T Consensus 270 l~kl~RLaGaD~~~~~~~~Gk~~~~---~~-----~~~~~~~~~~~~~~~k~~~Pv-~sgG~-~~g~vp~~~~~~G~Dvi 339 (391)
T cd08209 270 LGTLMRLAGADAVLFPSPYGSVALS---KE-----EALAIAEALRRGGAFKGVFPV-PSAGI-HPGLVPQLLRDFGTDVI 339 (391)
T ss_pred HHHHHHHcCCCccccCCccCCcCCC---HH-----HHHHHHHHHhCcCCCCCceEe-cCCCC-ChhHHHHHHHHhCCceE
Confidence 4566677999999875421111110 00 001111122211 1 12454 46666 6788888887 89884
Q ss_pred eeehHHHHhCCcc
Q 013789 293 VMVGRAAYQNPWY 305 (436)
Q Consensus 293 VmiGRa~l~~P~l 305 (436)
+++|-|+++.|+=
T Consensus 340 ~~~GGGi~gHp~G 352 (391)
T cd08209 340 LNAGGGIHGHPDG 352 (391)
T ss_pred EecCcceecCCCC
Confidence 4568889999985
No 479
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.81 E-value=6.4 Score=39.26 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHHH
Q 013789 209 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR 287 (436)
Q Consensus 209 ~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l~ 287 (436)
++.+++.+. + ++|+|.|-+-.-+ .+.+.+.++.. .++.+-++||| +.+.+.++.+
T Consensus 213 etleea~eA----~-~aGaDiImLDnms------------------pe~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~ 268 (294)
T PRK06978 213 ETLAQLETA----L-AHGAQSVLLDNFT------------------LDMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAE 268 (294)
T ss_pred CCHHHHHHH----H-HcCCCEEEECCCC------------------HHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHh
Confidence 345555442 2 5999998874322 22233333222 26789999999 7899999999
Q ss_pred cCCCeeeehHHHHhCCcc
Q 013789 288 KGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 288 ~Gad~VmiGRa~l~~P~l 305 (436)
+|+|.+.+|.-...-||+
T Consensus 269 tGVD~IS~galthsa~~l 286 (294)
T PRK06978 269 TGVDRISIGALTKDVRAT 286 (294)
T ss_pred cCCCEEEeCccccCCccc
Confidence 999999999987777775
No 480
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=82.74 E-value=46 Score=34.36 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=86.6
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
+++++.. .++|++.-+. |-+|+.+++.+..+..-|.|.|-=.-+..+.. ...-.+.+..+.+++
T Consensus 118 ~R~~lgv--~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~----------~~p~~eRv~~~~~a~ 185 (366)
T cd08148 118 IRKLLGV--YGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQP----------FCPLRDRITEVAAAL 185 (366)
T ss_pred HHHHhCC--CCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccccccccCCCC----------CCcHHHHHHHHHHHH
Confidence 4555544 5799998876 66799999999988888988763222111110 011223444444444
Q ss_pred ---hhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-
Q 013789 190 ---AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF- 265 (436)
Q Consensus 190 ---~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~- 265 (436)
.+.+|....- -.+++. ...++.+. ++.+.+.|+.++-+..-+. | |..+..+.+..
T Consensus 186 ~~a~~eTG~~~~y--~~NiT~--~~~em~~r-a~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~ 244 (366)
T cd08148 186 DRVQEETGEKKLY--AVNVTA--GTFEIIER-AERALELGANMLMVDVLTA---G-------------FSALQALAEDFE 244 (366)
T ss_pred HHHHHhhCCcceE--EEEccC--CHHHHHHH-HHHHHHhCCCEEEEecccc---c-------------hHHHHHHHHhCc
Confidence 4456644221 222232 23566655 3455679998887754332 2 45555666532
Q ss_pred CCcEEEEe----CCC-------CCHHHHHHHHH-cCCCeeeehHH
Q 013789 266 PDLTFTLN----GGI-------NTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 266 ~~iPVIan----GgI-------~s~~da~~~l~-~Gad~VmiGRa 298 (436)
.++||.+- |-+ .+..-..++.+ .|||.+.+++.
T Consensus 245 ~~l~IhaHrA~~ga~~~~~~~G~~~~~l~kl~RLaGaD~~~~~t~ 289 (366)
T cd08148 245 IDLPIHVHRAMHGAVTRSKFHGISMLVLAKLLRMAGGDFIHTGTV 289 (366)
T ss_pred CCcEEEeccccccccccCCCCCcCHHHHHHHHHHcCCCccccCCc
Confidence 26777542 311 34455556666 89999988765
No 481
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=82.71 E-value=16 Score=34.46 Aligned_cols=141 Identities=16% Similarity=0.066 Sum_probs=74.6
Q ss_pred CcEEEEEcCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEe--
Q 013789 125 HPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-- 201 (436)
Q Consensus 125 ~pi~vQL~g~~-p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKi-- 201 (436)
.++++=+--+| ++.....++.+.++|+|.+.+|.... .+.+...++..++. +.-+.+-+
T Consensus 50 ~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g-----------------~~~l~~~~~~~~~~-~~~v~~v~~l 111 (213)
T TIGR01740 50 KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG-----------------SESVEAAKEAASEG-GRGLLAVTEL 111 (213)
T ss_pred CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC-----------------HHHHHHHHHHhhcC-CCeEEEEEcC
Confidence 36666664344 34445556666789999999985221 23355555554432 32122222
Q ss_pred -ccCCCC-CCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH
Q 013789 202 -RIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (436)
Q Consensus 202 -R~G~~~-~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~ 279 (436)
..|..+ .....+..-.+++...+.|++.+..++ +.+..+.+...+ -++..+||.-.
T Consensus 112 ss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~~---------------------~~~~~ir~~~~~-~~~vtPGI~~~ 169 (213)
T TIGR01740 112 TSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCSA---------------------EEAKEIRKFTGD-FLILTPGIRLQ 169 (213)
T ss_pred CCCChhhhCcCHHHHHHHHHHHhhhcCCeEEEeCH---------------------HHHHHHHHhcCC-ceEEeCCcCCC
Confidence 222111 112222222234445556777665321 112222232223 36888888632
Q ss_pred -H-H--------HHHHHHcCCCeeeehHHHHhCCcc
Q 013789 280 -D-E--------VNAALRKGAHHVMVGRAAYQNPWY 305 (436)
Q Consensus 280 -~-d--------a~~~l~~Gad~VmiGRa~l~~P~l 305 (436)
. . +..+.+.|||.+.+||+++..++.
T Consensus 170 g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~ 205 (213)
T TIGR01740 170 SKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDP 205 (213)
T ss_pred CCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCH
Confidence 1 1 156667999999999999887763
No 482
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=82.50 E-value=28 Score=36.09 Aligned_cols=119 Identities=12% Similarity=0.052 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHH-HCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccC-CcEEEEeccCCCCCCcHH
Q 013789 135 NLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYN 212 (436)
Q Consensus 135 ~p~~~~~aA~~~~-~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~-iPvsvKiR~G~~~~~~~~ 212 (436)
+++.+.+.++.+. +.||..+-+..|- .+++.-.+.++++++.++ +.+.+-.--+|+ .+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~----------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~----~~ 227 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV----------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWS----LE 227 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC----------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcC----HH
Confidence 6777777666554 4699999886431 234445567888888763 223222222332 33
Q ss_pred HHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcC-CC
Q 013789 213 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 291 (436)
Q Consensus 213 ~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~G-ad 291 (436)
+..++ .+.+++ ++.++- + .++ +++.+.++.+.. ++||.+.=-+.+.+++.++++.| +|
T Consensus 228 ~A~~~-~~~l~~-~l~~iE----e------------P~~--d~~~~~~L~~~~-~~PIa~dEs~~~~~~~~~~i~~~avd 286 (395)
T cd03323 228 TAIRL-AKELEG-VLAYLE----D------------PCG--GREGMAEFRRAT-GLPLATNMIVTDFRQLGHAIQLNAVD 286 (395)
T ss_pred HHHHH-HHhcCc-CCCEEE----C------------CCC--CHHHHHHHHHhc-CCCEEcCCcccCHHHHHHHHHcCCCc
Confidence 44443 344555 655443 1 111 366666776664 89988876788999999999854 66
Q ss_pred eee
Q 013789 292 HVM 294 (436)
Q Consensus 292 ~Vm 294 (436)
.++
T Consensus 287 il~ 289 (395)
T cd03323 287 IPL 289 (395)
T ss_pred EEe
Confidence 663
No 483
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=82.36 E-value=7.9 Score=38.42 Aligned_cols=57 Identities=21% Similarity=0.160 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCcccccc---CChHHHHHHHHHHhhccCCcEEE
Q 013789 135 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM---LDPKFVGEAMSVIAANTNVPVSV 199 (436)
Q Consensus 135 ~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll---~~~~~l~eiv~av~~~~~iPvsv 199 (436)
+++...+-|....+.|+|.|||+.-+-.+ |+... ...+.+..+++++++.+++||+|
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrP--------g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISI 95 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRP--------GAAEVSVEEELDRVIPVVEAIAQRFEVWISV 95 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCC--------CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 56666666666677899999999644322 22211 23345666778887777888877
No 484
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=82.25 E-value=3.8 Score=39.95 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEE
Q 013789 134 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 199 (436)
Q Consensus 134 ~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsv 199 (436)
.+++...+-|....+.|+|.||||++...+....- +.....+.+..+++++++.+++||++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~-----~~~~E~~rl~~~v~~l~~~~~~piSI 81 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPV-----SVEEELERVIPVLRALAGEPDVPISV 81 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcC-----CHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 46777777777777889999999988765421110 01133466778888888777888876
No 485
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=82.20 E-value=7.2 Score=37.06 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=34.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHHcCCCeeeehHHHHhCCc
Q 013789 267 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 267 ~iPVIanGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 304 (436)
++-+++-.||++++|++...+.|+.+|.+|..++..-+
T Consensus 237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sD 274 (289)
T KOG4201|consen 237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSD 274 (289)
T ss_pred ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccC
Confidence 67889999999999999999999999999999997654
No 486
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=82.19 E-value=74 Score=33.96 Aligned_cols=199 Identities=16% Similarity=0.198 Sum_probs=106.6
Q ss_pred CCCCCChHHHHHHHH--HcCCCcEEE-eccccchhhhhcccchhhhh----cc-CCC--CCcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDRFL----AF-SPE--QHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~~--~~Gg~gl~~-temv~~~~l~~~~~~~~~~~----~~-~~~--~~pi~vQL~g~~p~~~~~aA~ 144 (436)
|-.|.+..+|+.++. ..||++++= -|.+..+....-.+.+.... +. .++ ..-..+||.+.+++++.+=++
T Consensus 169 P~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~em~~ra~ 248 (468)
T PRK04208 169 PKLGLSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEEMYKRAE 248 (468)
T ss_pred cccCCCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHHHHHHHH
Confidence 778999999999984 457777653 22222221111111111111 11 112 234789999988999999999
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh---ccCCcEEEEeccCCCCC-----CcHHHHHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDDH-----DSYNQLCD 216 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~---~~~iPvsvKiR~G~~~~-----~~~~~~~~ 216 (436)
++.+.|.+.+-+|.. . +|- ..+..+++ ..++||-. .|.++-.. .-+.- .
T Consensus 249 ~~~e~G~~~~mv~~~-----~-----~G~----------~~l~~l~~~~~~~~l~Iha-HrA~~ga~~r~~~~Gis~--~ 305 (468)
T PRK04208 249 FAKELGSPIVMIDVV-----T-----AGW----------TALQSLREWCRDNGLALHA-HRAMHAAFTRNPNHGISF--R 305 (468)
T ss_pred HHHHhCCCEEEEecc-----c-----ccc----------HHHHHHHHhhhcCCcEEEe-cCCcccccccCcCCCCCH--H
Confidence 999999988777742 1 121 11233333 34677644 33332210 01111 1
Q ss_pred HHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhc---------------C----CCcEEEEeCCCC
Q 013789 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD---------------F----PDLTFTLNGGIN 277 (436)
Q Consensus 217 ~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~---------------~----~~iPVIanGgI~ 277 (436)
.+.++..-+|+|.+++.+--....+. .... ......+... . +-+|| .+||+
T Consensus 306 vl~Kl~RLaGaD~ih~~t~~Gk~~~~---~~~~-----~~~~~~l~~~~~~~~~~~~~~~~q~~~~~k~~~Pv-~SGG~- 375 (468)
T PRK04208 306 VLAKLLRLIGVDHLHTGTVVGKLEGD---RAEV-----LGYYDILREDFVPEDRSRGIFFDQDWGSIKPVFPV-ASGGI- 375 (468)
T ss_pred HHHHHHHHcCCCccccCCccCCccCC---HHHH-----HHHHHHHhhhhccccccccccccccccCCCCceEe-cCCCC-
Confidence 24666777999999875321111111 0000 1111111110 0 12444 46777
Q ss_pred CHHHHHHHHH-cCCCe-eeehHHHHhCCcch
Q 013789 278 TVDEVNAALR-KGAHH-VMVGRAAYQNPWYT 306 (436)
Q Consensus 278 s~~da~~~l~-~Gad~-VmiGRa~l~~P~lf 306 (436)
++..+.++++ .|-|. .++|-|+++.|+=.
T Consensus 376 ~~g~vp~~~~~~G~Dvil~~GGGi~gHP~G~ 406 (468)
T PRK04208 376 HPGHMPALLDIFGDDVVLQFGGGTHGHPDGT 406 (468)
T ss_pred ChhHHHHHHHHhCCceEEecCCceecCCCCh
Confidence 6778888887 88774 46788999999853
No 487
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=81.96 E-value=33 Score=34.83 Aligned_cols=164 Identities=12% Similarity=0.194 Sum_probs=75.6
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEecC-------CCCCCccccCCCccccccCCh----HHHHHHHHHHhh-
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNC-------GCPSPKVAGHGCFGVSLMLDP----KFVGEAMSVIAA- 191 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~-------gcP~~~v~r~g~yG~~Ll~~~----~~l~eiv~av~~- 191 (436)
..|+++ =.| .+...+..+.+.+.||.+|.+.- |-|.+.+.+..+ ..++++.. .=+...++.+++
T Consensus 56 ~NPi~l-AsG--~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~-~~~~iN~~Gl~n~G~~~~l~~i~~~ 131 (335)
T TIGR01036 56 PNPLGL-AAG--FDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIE-DEALINRMGFNNHGADVLVERLKRA 131 (335)
T ss_pred CCCcEe-CCc--cCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECcc-ccccccCCCCCChhHHHHHHHHhhc
Confidence 346655 222 34445566777788999999853 333333222111 12222221 123334444433
Q ss_pred ccCCcEEEEeccC--CCCCCcHHHHHHHHHHHhhcCCccEEEE--ccCcccccCCCCCCCCCCCCccHHHHHHHHhcC--
Q 013789 192 NTNVPVSVKCRIG--VDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDF-- 265 (436)
Q Consensus 192 ~~~iPvsvKiR~G--~~~~~~~~~~~~~la~~~e~~Gvd~I~v--hgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-- 265 (436)
..+.||.|-+... .......++.++.+.++ .+ .+|+|.+ +.-.. .|.... +.+..-.+.+..+++..
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~-~~-~ad~iElNlScPn~--~~~~~~---~~~~~~~~i~~~V~~~~~~ 204 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKL-GP-LADYLVVNVSSPNT--PGLRDL---QYKAELRDLLTAVKQEQDG 204 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHH-hh-hCCEEEEEccCCCC--CCcccc---cCHHHHHHHHHHHHHHHHh
Confidence 3356665544221 11223455555543333 22 4899987 22111 121111 11111123333433322
Q ss_pred ----CCcEEEE--eCCCC--CHHHHHHHH-HcCCCeeeehHH
Q 013789 266 ----PDLTFTL--NGGIN--TVDEVNAAL-RKGAHHVMVGRA 298 (436)
Q Consensus 266 ----~~iPVIa--nGgI~--s~~da~~~l-~~Gad~VmiGRa 298 (436)
.++||++ .-++. +..++.+++ +.|||||.+---
T Consensus 205 ~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT 246 (335)
T TIGR01036 205 LRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNT 246 (335)
T ss_pred hhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECC
Confidence 1288874 44554 355555544 489999986443
No 488
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=81.92 E-value=9.4 Score=36.32 Aligned_cols=155 Identities=14% Similarity=0.190 Sum_probs=94.8
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHCCCCEEEec-CCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 013789 124 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLN-CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 202 (436)
Q Consensus 124 ~~pi~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN-~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR 202 (436)
+..+.|-|++.||+++...+.++.+.....|+=- -|+. |-.+++... ..++.++.+-+|.|=.||+.
T Consensus 55 ~~avSVGLGaGdp~Q~~~Va~Ia~~~~P~HVNQvFtgag---------~sr~~Lg~~---~T~vN~LvsPTG~~G~VkIS 122 (236)
T TIGR03581 55 DNAVSVGLGAGDPNQSAMVADISAHTQPQHINQVFTGVG---------TSRALLGQA---DTVINGLVSPTGTPGLVNIS 122 (236)
T ss_pred CCceEEecCCCCHHHHHHHHHHHHHcCCccccccccchH---------HHHHHhCCc---cceEEEeecCCCccceEEec
Confidence 4458999999999999999999988755444311 1111 122222221 23667777778999999999
Q ss_pred cCCCCCCc---HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCH
Q 013789 203 IGVDDHDS---YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 279 (436)
Q Consensus 203 ~G~~~~~~---~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~ 279 (436)
.|...... ...+.. ...++.+.|++.|-...- +|+...+ .+..+.+...+. ++++==.||| |.
T Consensus 123 TGp~Ss~~~~~iV~vet-Aiaml~dmG~~SiKffPM----~Gl~~le-------E~~avA~aca~~-g~~lEPTGGI-dl 188 (236)
T TIGR03581 123 TGPLSSQGKEAIVPIET-AIAMLKDMGGSSVKFFPM----GGLKHLE-------EYAAVAKACAKH-GFYLEPTGGI-DL 188 (236)
T ss_pred cCcccccCCCceeeHHH-HHHHHHHcCCCeeeEeec----CCcccHH-------HHHHHHHHHHHc-CCccCCCCCc-cH
Confidence 98543211 111111 233567789888876532 2332110 133444433333 6777889999 77
Q ss_pred HHHHHHHH----cCCCeeeehHHHHhCCcchhhhhhh
Q 013789 280 DEVNAALR----KGAHHVMVGRAAYQNPWYTLGHVDT 312 (436)
Q Consensus 280 ~da~~~l~----~Gad~VmiGRa~l~~P~lf~~~~~~ 312 (436)
+.+.+.++ .|+.-|| |-++...+|.
T Consensus 189 ~Nf~~I~~i~ldaGv~kvi--------PHIYssiIDk 217 (236)
T TIGR03581 189 DNFEEIVQIALDAGVEKVI--------PHVYSSIIDK 217 (236)
T ss_pred HhHHHHHHHHHHcCCCeec--------cccceecccc
Confidence 77766554 7999988 8887666653
No 489
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=81.90 E-value=41 Score=35.24 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=87.0
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
+++++.+ .++|++..+. |-+++.+++.+..+..-|.|.|-=.-+...... +-+.++.+.+.+.++..
T Consensus 130 ~R~~lgv--~~RPL~~tiiKp~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~-------~p~~~Rv~~~~~a~~~a 200 (407)
T TIGR03332 130 IRKLLGV--HERPLLMSIFKGMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGL-------APFEKRITEGKEVLQEV 200 (407)
T ss_pred HHHHhCC--CCCceeEeEeCCccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCC-------CCHHHHHHHHHHHHHHH
Confidence 4444443 6789988886 567888888888777778887632221111100 01113444455555555
Q ss_pred hhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCc
Q 013789 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDL 268 (436)
Q Consensus 190 ~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~i 268 (436)
.+.+|..... -.+++. ...++.+. ++.+.+.|+.++-+.--+. | |..+..+.++. .++
T Consensus 201 ~~eTG~~~~y--~~NiT~--~~~em~~r-a~~a~~~G~~~~mv~~~~~---G-------------~~~~~~l~~~~~~~l 259 (407)
T TIGR03332 201 YEQTGHKTLY--AVNLTG--RTFDLKDK-AKRAAELGADVLLFNVFAY---G-------------LDVLQSLAEDDEIPV 259 (407)
T ss_pred HHHHCCcceE--eecCCC--CHHHHHHH-HHHHHHhCCCEEEEecccc---C-------------hHHHHHHHhcCCCCc
Confidence 5556654322 223332 23456655 3455679998887753322 2 45555665531 256
Q ss_pred EEEE----eC--------CCCCHHHHHHHHH-cCCCeeeehHH
Q 013789 269 TFTL----NG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 269 PVIa----nG--------gI~s~~da~~~l~-~Gad~VmiGRa 298 (436)
||.+ .| ||....-..++.+ .|||.+.+++.
T Consensus 260 pihaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 302 (407)
T TIGR03332 260 PIMAHPAVSGAYTSSPFYGFSHSLLLGKLLRYAGADFSLFPSP 302 (407)
T ss_pred EEEEecCcccccccCCCCcccHHHHHHHHHHhcCcCccccCCc
Confidence 7743 23 4544455566666 89999999875
No 490
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=81.85 E-value=5.3 Score=39.40 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHH---
Q 013789 211 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAAL--- 286 (436)
Q Consensus 211 ~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-~~iPVIanGgI~s~~da~~~l--- 286 (436)
.+.+.+.+..+ .+.|++.|.+.|-+....-++..+ +.+.+...++.. .++|||+.=+=.+.+++.+..
T Consensus 18 ~~~~~~~i~~l-~~~Gv~Gi~~~GstGE~~~Ls~~E-------r~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a 89 (285)
T TIGR00674 18 FAALEKLIDFQ-IENGTDAIVVVGTTGESPTLSHEE-------HKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFA 89 (285)
T ss_pred HHHHHHHHHHH-HHcCCCEEEECccCcccccCCHHH-------HHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHH
Confidence 33444444433 459999999987654222222111 233343344432 258888554434455544333
Q ss_pred -HcCCCeeeehHHHHhCC
Q 013789 287 -RKGAHHVMVGRAAYQNP 303 (436)
Q Consensus 287 -~~Gad~VmiGRa~l~~P 303 (436)
+.|||+||+.-..+..|
T Consensus 90 ~~~Gad~v~v~pP~y~~~ 107 (285)
T TIGR00674 90 EDVGADGFLVVTPYYNKP 107 (285)
T ss_pred HHcCCCEEEEcCCcCCCC
Confidence 37999999998877665
No 491
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=81.79 E-value=21 Score=35.63 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEec-CCCCCCccccCCCccccccCChHHHHHHHHHHhhccC--CcEEEEeccCCCC---
Q 013789 134 SNLDNLAKATELANAYNYDEINLN-CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDD--- 207 (436)
Q Consensus 134 ~~p~~~~~aA~~~~~~G~d~IdLN-~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~--iPvsvKiR~G~~~--- 207 (436)
..||.+.+.-+...++|+|.|+-| +||-..+-.+.+- .....+--....+|.+++....+ .|..|-=.+|...
T Consensus 50 T~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~l-ed~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~ 128 (311)
T COG0646 50 TKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGL-EDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTL 128 (311)
T ss_pred CCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhCh-HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcC
Q ss_pred ------CCcHHHHHHHHHHHhh---cCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCC-----cEEEEe
Q 013789 208 ------HDSYNQLCDFIYKVSS---LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-----LTFTLN 273 (436)
Q Consensus 208 ------~~~~~~~~~~la~~~e---~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~-----iPVIan 273 (436)
..+++++.+......+ +.|+|.|-+-.-.-.+. ....-..+++..+ +|||.+
T Consensus 129 ~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~--------------~KaA~~a~~~~~~~~~~~LPv~~s 194 (311)
T COG0646 129 SISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLN--------------AKAAVFAAREVFEELGVRLPVMIS 194 (311)
T ss_pred CcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHH--------------HHHHHHHHHHHHHhcCCcccEEEE
Q ss_pred CCCCC---------HHHHHHHHH-cCCCeeee
Q 013789 274 GGINT---------VDEVNAALR-KGAHHVMV 295 (436)
Q Consensus 274 GgI~s---------~~da~~~l~-~Gad~Vmi 295 (436)
|-|.+ ++++...++ .|++.|.+
T Consensus 195 ~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGl 226 (311)
T COG0646 195 GTITDSGRTLSGQTIEAFLNSLEHLGPDAVGL 226 (311)
T ss_pred EEEecCceecCCCcHHHHHHHhhccCCcEEee
No 492
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=81.71 E-value=74 Score=33.94 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred EEcCC--CHHHHHHH-HHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCC
Q 013789 130 QIGGS--NLDNLAKA-TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (436)
Q Consensus 130 QL~g~--~p~~~~~a-A~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~ 206 (436)
|+.|. .++++.+. .+.+.+.|+|.|.+-..+-. .+.+.+.++.+++. |.-+..-+.....
T Consensus 85 N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd----------------~~n~~~~i~~ak~~-G~~v~~~i~~t~~ 147 (467)
T PRK14041 85 NLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALND----------------IRNLEKSIEVAKKH-GAHVQGAISYTVS 147 (467)
T ss_pred cccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCH----------------HHHHHHHHHHHHHC-CCEEEEEEEeccC
Q ss_pred CCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHH
Q 013789 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286 (436)
Q Consensus 207 ~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l 286 (436)
...+.+.+.+ +++.++++|+|.|.+---. |... |..-.+++..+++.+ ++||-.-+==..+-.....+
T Consensus 148 p~~t~e~~~~-~a~~l~~~Gad~I~i~Dt~----G~l~------P~~v~~Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~l 215 (467)
T PRK14041 148 PVHTLEYYLE-FARELVDMGVDSICIKDMA----GLLT------PKRAYELVKALKKKF-GVPVEVHSHCTTGLASLAYL 215 (467)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEECCcc----CCcC------HHHHHHHHHHHHHhc-CCceEEEecCCCCcHHHHHH
Q ss_pred H---cCCCeee-----ehHHHHhCCcchhhhhhhhhcCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 013789 287 R---KGAHHVM-----VGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLH 358 (436)
Q Consensus 287 ~---~Gad~Vm-----iGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~k~~~~ 358 (436)
+ .|||.|- +|.++= ||.+ +.+-..+.+..-...--.+.+....+|.+.+..+|..-.... .----.-
T Consensus 216 aAieaGad~vD~sv~~~g~gag-N~at--E~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~~y~~~~~~~--~~~~~~v 290 (467)
T PRK14041 216 AAVEAGADMFDTAISPFSMGTS-QPPF--ESMYYAFRENGKETDFDRKALKFLVEYFTKVREKYSEYDVGM--KSPDSRI 290 (467)
T ss_pred HHHHhCCCEEEeeccccCCCCC-ChhH--HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCC--CCCCcCe
Q ss_pred hhcCCCCC--hHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 013789 359 FFHSEPGN--GLFKRKADAAFQTCKTVKSFLEETIVA 393 (436)
Q Consensus 359 y~~~~~g~--~~~r~~l~~~~~~~~~~~~~l~~~~~~ 393 (436)
|.|.+||. +.+++++.+. ...+.+.++++++-+.
T Consensus 291 ~~~q~PGG~~snl~~Ql~~~-g~~~~~~~v~~e~~~v 326 (467)
T PRK14041 291 LVSQIPGGMYSNLVKQLKEQ-KMLHKLDKVLEEVPRV 326 (467)
T ss_pred eeCCCCcchHHHHHHHHHHC-CcHhHHHHHHHHHHHH
No 493
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=81.71 E-value=12 Score=36.27 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCC-----cH
Q 013789 137 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD-----SY 211 (436)
Q Consensus 137 ~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~-----~~ 211 (436)
..+.+..+.+++.||+.|||+-|+=.- ..+.-.++++.+++. -+.|+.-.|..+.. +.
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~l--------------~~~~r~~~I~~~~~~---Gf~v~~EvG~K~~~~~~~~~~ 146 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTIDL--------------PEEERLRLIRKAKEE---GFKVLSEVGKKDPESDFSLDP 146 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS-----------------HHHHHHHHHHHCCT---TSEEEEEES-SSHHHHTT--C
T ss_pred ChHHHHHHHHHHcCCCEEEecCCceeC--------------CHHHHHHHHHHHHHC---CCEEeecccCCCchhcccCCH
Confidence 345566677889999999999764321 123344555554432 25566666655421 13
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCcc
Q 013789 212 NQLCDFIYKVSSLSPTRHFIIHSRKA 237 (436)
Q Consensus 212 ~~~~~~la~~~e~~Gvd~I~vhgrt~ 237 (436)
.++.+.+.+-++ +|++.|++-+|+.
T Consensus 147 ~~~i~~~~~dLe-AGA~~ViiEarEs 171 (244)
T PF02679_consen 147 EELIEQAKRDLE-AGADKVIIEARES 171 (244)
T ss_dssp CHHHHHHHHHHH-HTECEEEE--TTT
T ss_pred HHHHHHHHHHHH-CCCCEEEEeeecc
Confidence 355555555554 8999999999986
No 494
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=81.64 E-value=38 Score=36.14 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=86.3
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEec--CCCCCCccccCCCccccccCChHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 187 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN--~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~ 187 (436)
+++++.+ .++|++.-+. |-+|+.+++.+..+..-|+|.|-=. .+.+.. +-+.++.+.+.+.++
T Consensus 158 ~R~llgv--~~RPLigtiiKP~~GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~---------~p~~eRv~~~~~a~~ 226 (475)
T CHL00040 158 ERDKLNK--YGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPF---------MRWRDRFLFCAEAIY 226 (475)
T ss_pred HHHHhCC--CCCceEEEecccccCCCHHHHHHHHHHHHcCCCcccccCccCCCCCC---------CCHHHHHHHHHHHHH
Confidence 4455444 6799999986 6689999999888888888876322 211110 011133344444444
Q ss_pred HHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHH---hc
Q 013789 188 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RD 264 (436)
Q Consensus 188 av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~---~~ 264 (436)
...+.+|..... -.++.. ++..++.+. ++.+.+.|+.++-+.--+. | |..+..+. ++
T Consensus 227 ~a~~eTG~~~~y--~~NiTa-~~~~em~~r-a~~a~e~G~~~~mv~~~~~---G-------------~~al~~l~~~~~~ 286 (475)
T CHL00040 227 KAQAETGEIKGH--YLNATA-GTCEEMYKR-AVFARELGVPIVMHDYLTG---G-------------FTANTSLAHYCRD 286 (475)
T ss_pred HHHHhhCCccee--eeccCC-CCHHHHHHH-HHHHHHcCCceEEEecccc---c-------------cchHHHHHHHhhh
Confidence 444456654322 223331 245566665 3445568998887653332 3 22333343 34
Q ss_pred CCCcEEEEe----C--------CCCCHHHHHHHHH-cCCCeeeehHH
Q 013789 265 FPDLTFTLN----G--------GINTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 265 ~~~iPVIan----G--------gI~s~~da~~~l~-~Gad~VmiGRa 298 (436)
.++||.+- | ||.- .-..++.+ .|||.+.+|+.
T Consensus 287 -~~l~IhaHrA~~ga~~r~~~~Gis~-~vl~KL~RLaGaD~ih~~t~ 331 (475)
T CHL00040 287 -NGLLLHIHRAMHAVIDRQKNHGIHF-RVLAKALRMSGGDHIHAGTV 331 (475)
T ss_pred -cCceEEeccccccccccCccCCCcH-HHHHHHHHHcCCCccccCCc
Confidence 37777542 3 4533 44566666 89999988886
No 495
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=81.49 E-value=32 Score=36.07 Aligned_cols=198 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHH--HHcCCCcEEE-eccccchhhhhcccchhhhhc-------cCCCCCcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-------FSPEQHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~--~~~Gg~gl~~-temv~~~~l~~~~~~~~~~~~-------~~~~~~pi~vQL~g~~p~~~~~aA~ 144 (436)
|=.|.|..+++.++ ...||++++= -|.+.......-.+......+ -+-+..-..+||.+.+++++.+=++
T Consensus 141 P~~Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~em~~ra~ 220 (414)
T cd08206 141 PKLGLSPKEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPEEMIKRAE 220 (414)
T ss_pred cccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHHHHHHHHH
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh---ccCCcEEEEeccCCCCCCcHHH-----HHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDDHDSYNQ-----LCD 216 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~---~~~iPvsvKiR~G~~~~~~~~~-----~~~ 216 (436)
++.++|...+-+|. .-+| ...++++++ ..++||-. .|.++-....-.+ .+
T Consensus 221 ~~~~~G~~~~mv~~----------~~~G----------~~~l~~l~~~~~~~~l~ih~-HrA~~ga~~~~~~~Gis~~v- 278 (414)
T cd08206 221 FAKELGSVIVMVDG----------VTAG----------WTAIQSARRWCPDNGLALHA-HRAGHAAFTRQKNHGISMRV- 278 (414)
T ss_pred HHHHhCCcEEEEee----------eccc----------HHHHHHHHHhccccCeEEEE-ccccceecccCCCCcCcHHH-
Q ss_pred HHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcC-----------------CCcEEEEeCCCCCH
Q 013789 217 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-----------------PDLTFTLNGGINTV 279 (436)
Q Consensus 217 ~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~-----------------~~iPVIanGgI~s~ 279 (436)
+.++..-+|+|.+++-+--..+.+..... ......+.+.. ..+-=+.+||+ ++
T Consensus 279 -l~kl~RLaGaD~ih~~t~~Gk~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv~sGG~-~~ 348 (414)
T cd08206 279 -LAKLARLIGVDHIHTGTVVGKLEGDPSEV--------KGIADMLREDEVEGDLSRIFFNQDWGGMKPVFPVASGGL-HP 348 (414)
T ss_pred -HHHHHHHcCCCccccCCCccCCCCCHHHH--------HHHHHHhhcccccCCccccccccccccCCCcEEecCCcc-Ch
Q ss_pred HHHHHHHH-cCCC-eeeehHHHHhCCc
Q 013789 280 DEVNAALR-KGAH-HVMVGRAAYQNPW 304 (436)
Q Consensus 280 ~da~~~l~-~Gad-~VmiGRa~l~~P~ 304 (436)
..+.++++ .|-| ..++|-|+++.|+
T Consensus 349 ~~~p~~~~~~G~Dvil~~GGGi~gHP~ 375 (414)
T cd08206 349 GRMPALIEILGDDVILQFGGGTHGHPD 375 (414)
T ss_pred hHHHHHHHHhCCceEEecCCceecCCC
No 496
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=81.48 E-value=31 Score=32.39 Aligned_cols=139 Identities=12% Similarity=0.186 Sum_probs=86.7
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhhccCCcEEEEeccCCC
Q 013789 127 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 206 (436)
Q Consensus 127 i~vQL~g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~ 206 (436)
|=+-+.-.+|+++.. -...+|++.+.+|+- .+ ++ ..++++.+++. |..+.+-+.+|.
T Consensus 67 fD~HmMV~~Peq~V~---~~a~agas~~tfH~E-----~~----------q~---~~~lv~~ir~~-Gmk~G~alkPgT- 123 (224)
T KOG3111|consen 67 FDVHMMVENPEQWVD---QMAKAGASLFTFHYE-----AT----------QK---PAELVEKIREK-GMKVGLALKPGT- 123 (224)
T ss_pred eeEEEeecCHHHHHH---HHHhcCcceEEEEEe-----ec----------cC---HHHHHHHHHHc-CCeeeEEeCCCC-
Confidence 567777889987653 345678888877741 11 11 56777777664 555555555553
Q ss_pred CCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHH
Q 013789 207 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286 (436)
Q Consensus 207 ~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l 286 (436)
+.+.+.. ++ .-+|.+-|..-+...+|.+- ... -..-+..+.+.++++-|=.-||| +++.+.++.
T Consensus 124 ---~Ve~~~~----~~--~~~D~vLvMtVePGFGGQkF-----me~-mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a 187 (224)
T KOG3111|consen 124 ---PVEDLEP----LA--EHVDMVLVMTVEPGFGGQKF-----MED-MMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAA 187 (224)
T ss_pred ---cHHHHHH----hh--ccccEEEEEEecCCCchhhh-----HHH-HHHHHHHHHHhCCCceEEecCCc-CcchHHHHH
Confidence 2333322 22 24677766655552233211 000 13345566667777777799999 678999999
Q ss_pred HcCCCeeeehHHHHhCCc
Q 013789 287 RKGAHHVMVGRAAYQNPW 304 (436)
Q Consensus 287 ~~Gad~VmiGRa~l~~P~ 304 (436)
+.||+.+..|++.+.-++
T Consensus 188 ~AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 188 EAGANMIVAGSAVFGAAD 205 (224)
T ss_pred HcCCCEEEecceeecCCC
Confidence 999999999999876655
No 497
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=81.47 E-value=40 Score=35.91 Aligned_cols=155 Identities=17% Similarity=0.088 Sum_probs=87.6
Q ss_pred hhhhhccCCCCCcEEEEEc----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHH
Q 013789 114 LDRFLAFSPEQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 189 (436)
Q Consensus 114 ~~~~~~~~~~~~pi~vQL~----g~~p~~~~~aA~~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av 189 (436)
+++++.. .++|++.-+. |-+|+.+++.+..+..-|.|.|-=.-...+... +-+.++...+.+.+...
T Consensus 151 iR~~lgv--~~RPL~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f-------~p~~~Rv~~~~~a~~~a 221 (468)
T PRK04208 151 ERERLDK--YGRPLLGTTPKPKLGLSAKNYGRVVYEALRGGLDFTKDDENLNSQPF-------NRWRDRFLFVMEAIDKA 221 (468)
T ss_pred HHHHhCC--CCCceEEEeeccccCCCHHHHHHHHHHHHhcCCceeeCCCCCCCCCC-------ccHHHHHHHHHHHHHHH
Confidence 4445443 5799998886 668999999999888889888743211111000 01113334444444444
Q ss_pred hhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhc--CCC
Q 013789 190 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPD 267 (436)
Q Consensus 190 ~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~--~~~ 267 (436)
.+.+|..... -.++.. ++..++.+.. +.+.+.|+.++-+..-+. | |..+..+.+. ..+
T Consensus 222 ~~eTG~~k~y--~~NiT~-~~~~em~~ra-~~~~e~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~~ 281 (468)
T PRK04208 222 EAETGERKGH--YLNVTA-PTMEEMYKRA-EFAKELGSPIVMIDVVTA---G-------------WTALQSLREWCRDNG 281 (468)
T ss_pred HHhhCCcceE--EEecCC-CCHHHHHHHH-HHHHHhCCCEEEEecccc---c-------------cHHHHHHHHhhhcCC
Confidence 4456654221 123332 2355666653 344568998887764432 3 3444455542 247
Q ss_pred cEEEE----eC--------CCCCHHHHHHHHH-cCCCeeeehHH
Q 013789 268 LTFTL----NG--------GINTVDEVNAALR-KGAHHVMVGRA 298 (436)
Q Consensus 268 iPVIa----nG--------gI~s~~da~~~l~-~Gad~VmiGRa 298 (436)
+||.+ .| ||.- .-..++.+ .|||.+.+++.
T Consensus 282 l~IhaHrA~~ga~~r~~~~Gis~-~vl~Kl~RLaGaD~ih~~t~ 324 (468)
T PRK04208 282 LALHAHRAMHAAFTRNPNHGISF-RVLAKLLRLIGVDHLHTGTV 324 (468)
T ss_pred cEEEecCCcccccccCcCCCCCH-HHHHHHHHHcCCCccccCCc
Confidence 88843 33 4433 34556666 89999998875
No 498
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=81.41 E-value=16 Score=35.31 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=67.1
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEeccCCCCCCcHHHHHHHHHHHhhcCCccEEEEccCcccccCCCCCCCCCCC
Q 013789 172 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 251 (436)
Q Consensus 172 G~~Ll~~~~~l~eiv~av~~~~~iPvsvKiR~G~~~~~~~~~~~~~la~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~ 251 (436)
|=.+..+.+.+.++++.+++. |+.|+.=+.+ +.+.+ +.+.+.|+|.|-+|...-... .....
T Consensus 105 Gldv~~~~~~l~~~i~~L~~~-gIrVSLFidP------~~~qi-----~~A~~~GAd~VELhTG~yA~a-~~~~~----- 166 (239)
T PRK05265 105 GLDVAGQFDKLKPAIARLKDA-GIRVSLFIDP------DPEQI-----EAAAEVGADRIELHTGPYADA-KTEAE----- 166 (239)
T ss_pred cchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC------CHHHH-----HHHHHhCcCEEEEechhhhcC-CCcch-----
Confidence 666777888888888888554 7777776532 12221 234568999999995431100 00000
Q ss_pred CccHHHHHHH---HhcCCCcEEEEeCCCCCHHHHHHHHH-cCCCeeeehHHHHhCC
Q 013789 252 PLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 303 (436)
Q Consensus 252 ~~~~~~v~~l---~~~~~~iPVIanGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P 303 (436)
.-.++.+... ..+. .+-|=+-.|+ +.+.+..... .+..=|-||.+++.+-
T Consensus 167 ~~el~~~~~aa~~a~~l-GL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~A 220 (239)
T PRK05265 167 AAELERIAKAAKLAASL-GLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARA 220 (239)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHH
Confidence 0012222222 2222 6767777777 7788777655 6788899999887765
No 499
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=81.38 E-value=2.8 Score=43.42 Aligned_cols=43 Identities=30% Similarity=0.356 Sum_probs=37.0
Q ss_pred CccHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHHHcCCCeeeeh
Q 013789 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296 (436)
Q Consensus 252 ~~~~~~v~~l~~~~~~iPVIanGgI~s~~da~~~l~~Gad~VmiG 296 (436)
.+.|+.+..+++.. ++|||.- ||.+.+|+..+.+.|||+|.|.
T Consensus 239 ~~tW~~i~~lr~~~-~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 239 SLTWEDLAFLREWT-DLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCCHHHHHHHHHhc-CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 45699998888865 7898876 7899999999999999999975
No 500
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=81.38 E-value=31 Score=36.54 Aligned_cols=194 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHH--HHcCCCcEEE-eccccchhhhhcccchhhhhc-------cCCCCCcEEEEEcCCCHHHHHHHHH
Q 013789 75 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-------FSPEQHPIVLQIGGSNLDNLAKATE 144 (436)
Q Consensus 75 PMagvtd~~fr~~~--~~~Gg~gl~~-temv~~~~l~~~~~~~~~~~~-------~~~~~~pi~vQL~g~~p~~~~~aA~ 144 (436)
|-.|.+..+++.++ ...||++++= -|.+.......-.+.+....+ -+-+..-..+||.+.+++++.+-++
T Consensus 154 P~iGlsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~ 233 (450)
T cd08212 154 PKLGLSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAE 233 (450)
T ss_pred CccCCCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHH
Q ss_pred HHHHCCCCEEEecCCCCCCccccCCCccccccCChHHHHHHHHHHhh---ccCCcEEEEeccCCCCCCcHHHHH---HHH
Q 013789 145 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDDHDSYNQLC---DFI 218 (436)
Q Consensus 145 ~~~~~G~d~IdLN~gcP~~~v~r~g~yG~~Ll~~~~~l~eiv~av~~---~~~iPvsvKiR~G~~~~~~~~~~~---~~l 218 (436)
++.++|.+.+-+| .+. |- ..++++++ ..++||-. .|.++-....-...- ..+
T Consensus 234 ~a~~~G~~~~mv~------~~~--G~-------------~~l~~l~~~a~~~~l~Iha-HrA~~ga~~r~~~~Gis~~vl 291 (450)
T cd08212 234 FAKELGSPIIMHD------LLT--GF-------------TAIQSLAKWCRDNGMLLHL-HRAGHATYDRQKNHGIHFRVL 291 (450)
T ss_pred HHHHhCCCeEeee------ccc--cc-------------chHHHHHHHhhhcCceEEe-ccccceecccCccCCcCHHHH
Q ss_pred HHHhhcCCccEEEEccCcccccCCCCCCCCCCCCccHHHHHHHHhc-----------------------CCCcEEEEeCC
Q 013789 219 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-----------------------FPDLTFTLNGG 275 (436)
Q Consensus 219 a~~~e~~Gvd~I~vhgrt~~~~G~~~~~~~~i~~~~~~~v~~l~~~-----------------------~~~iPVIanGg 275 (436)
.+++.-+|+|.+++.+--....+. -+.+.++++. .+-.||...|
T Consensus 292 ~kl~RLaGaD~ih~~t~~Gk~~~~------------~~~~~~~~~~~~~~~~~~d~~~~~~~~q~~~~~k~~~Pv~sGG- 358 (450)
T cd08212 292 AKWLRLSGVDHIHAGTVVGKLEGD------------PLVTLGFYDLLRDDYIEKDRSRGIFFTQDWASLPGVMPVASGG- 358 (450)
T ss_pred HHHHHHcCCCccccCCCcCCcCCC------------HHHHHHHHHHHhhhhcccccccccccccccccCCCceEecCCC-
Q ss_pred CCCHHHHHHHHH-cCCC-eeeehHHHHhCCc
Q 013789 276 INTVDEVNAALR-KGAH-HVMVGRAAYQNPW 304 (436)
Q Consensus 276 I~s~~da~~~l~-~Gad-~VmiGRa~l~~P~ 304 (436)
.++..+.++++ .|-| ..++|-|+++.|+
T Consensus 359 -~~~~~vp~~~~~~G~Dvil~~GGGi~gHP~ 388 (450)
T cd08212 359 -IHVGQMHQLIEIFGDDVVLQFGGGTIGHPW 388 (450)
T ss_pred -CCHHHHHHHHHhcCCceEEecCcceecCCC
Done!