Query 013791
Match_columns 436
No_of_seqs 162 out of 302
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:26:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2754 Oligosaccharyltransfer 100.0 4E-137 9E-142 1007.9 37.7 419 13-436 11-430 (443)
2 PF03345 DDOST_48kD: Oligosacc 100.0 1E-132 2E-137 1023.4 42.1 398 32-436 1-411 (423)
3 TIGR03521 GldG gliding-associa 99.7 4.5E-16 9.7E-21 167.6 18.1 259 27-296 180-505 (552)
4 KOG3861 Sensory cilia assembly 99.1 4.4E-10 9.5E-15 110.2 11.1 168 80-287 54-242 (438)
5 PF09822 ABC_transp_aux: ABC-t 98.9 4.8E-09 1E-13 103.2 10.2 107 26-144 142-271 (271)
6 COG3225 GldG ABC-type uncharac 96.4 0.04 8.6E-07 58.4 12.6 59 236-302 431-489 (538)
7 PF14258 DUF4350: Domain of un 95.3 0.065 1.4E-06 41.7 6.6 65 43-115 5-70 (70)
8 PF09960 DUF2194: Uncharacteri 95.1 0.057 1.2E-06 59.1 7.7 95 31-137 55-155 (585)
9 PF01835 A2M_N: MG2 domain; I 93.9 0.94 2E-05 37.3 10.7 73 307-382 8-87 (99)
10 cd03142 GATase1_ThuA Type 1 gl 93.2 0.24 5.1E-06 47.6 6.7 72 43-115 23-95 (215)
11 KOG4266 Subtilisin kexin isozy 91.3 2.1 4.5E-05 46.8 11.4 93 47-149 653-772 (1033)
12 PF08532 Glyco_hydro_42M: Beta 91.0 0.5 1.1E-05 44.7 6.0 60 45-118 32-94 (207)
13 COG5426 Uncharacterized membra 90.9 0.45 9.8E-06 44.8 5.4 70 47-116 36-118 (254)
14 PF06283 ThuA: Trehalose utili 89.8 0.89 1.9E-05 43.1 6.7 204 31-284 1-216 (217)
15 cd03143 A4_beta-galactosidase_ 89.4 0.91 2E-05 40.5 6.0 60 43-113 26-85 (154)
16 PRK05568 flavodoxin; Provision 89.3 5.1 0.00011 35.0 10.7 102 30-137 2-116 (142)
17 PF00630 Filamin: Filamin/ABP2 85.5 2.9 6.3E-05 34.2 6.4 68 311-382 18-92 (101)
18 PF07090 DUF1355: Protein of u 83.2 0.95 2.1E-05 42.2 2.8 73 47-119 31-112 (177)
19 PRK05569 flavodoxin; Provision 82.0 16 0.00034 31.9 10.0 101 30-136 2-116 (141)
20 PF10634 Iron_transport: Fe2+ 81.4 4.8 0.0001 36.5 6.4 70 312-384 39-120 (151)
21 TIGR01753 flav_short flavodoxi 81.2 20 0.00043 30.8 10.3 101 32-137 1-116 (140)
22 PF13115 YtkA: YtkA-like 79.5 9.8 0.00021 30.4 7.2 62 311-378 18-85 (86)
23 PF13380 CoA_binding_2: CoA bi 79.1 20 0.00044 30.7 9.5 82 47-135 18-106 (116)
24 PRK06703 flavodoxin; Provision 77.0 32 0.00069 30.4 10.5 102 31-137 3-119 (151)
25 PRK06756 flavodoxin; Provision 76.7 27 0.00058 30.8 9.9 102 30-137 2-120 (148)
26 TIGR01755 flav_wrbA NAD(P)H:qu 74.5 27 0.00059 32.7 9.8 103 31-137 2-142 (197)
27 cd03132 GATase1_catalase Type 71.3 43 0.00094 29.1 9.8 105 29-140 1-120 (142)
28 PRK11780 isoprenoid biosynthes 70.2 19 0.00042 34.5 7.8 37 30-66 2-43 (217)
29 smart00557 IG_FLMN Filamin-typ 69.6 26 0.00057 28.5 7.5 63 311-382 15-78 (93)
30 cd05879 Ig_P0 Immunoglobulin ( 66.9 9.8 0.00021 32.8 4.5 20 353-372 87-107 (116)
31 PRK09271 flavodoxin; Provision 66.8 26 0.00056 31.6 7.5 85 31-116 2-93 (160)
32 PRK07308 flavodoxin; Validated 64.7 41 0.00089 29.6 8.3 101 31-137 3-119 (146)
33 cd01653 GATase1 Type 1 glutami 64.7 30 0.00065 26.7 6.8 55 33-88 2-56 (115)
34 cd03128 GAT_1 Type 1 glutamine 64.3 33 0.00073 25.1 6.7 78 34-112 3-83 (92)
35 COG4635 HemG Flavodoxin [Energ 62.0 12 0.00026 34.5 4.2 67 31-107 2-72 (175)
36 PRK03767 NAD(P)H:quinone oxido 60.5 75 0.0016 29.6 9.7 103 31-137 3-143 (200)
37 PF03358 FMN_red: NADPH-depend 60.3 46 0.001 29.1 7.8 110 31-144 2-148 (152)
38 PRK07053 glutamine amidotransf 54.0 85 0.0019 30.3 9.1 98 30-137 3-107 (234)
39 cd03134 GATase1_PfpI_like A ty 52.6 51 0.0011 29.2 6.9 96 31-132 1-112 (165)
40 COG2998 TupB ABC-type tungstat 52.3 34 0.00073 33.5 5.7 57 234-296 205-261 (280)
41 PF13344 Hydrolase_6: Haloacid 52.1 45 0.00097 27.8 5.9 31 99-133 68-101 (101)
42 TIGR00566 trpG_papA glutamine 52.0 55 0.0012 30.3 7.2 92 33-136 2-95 (188)
43 PF10354 DUF2431: Domain of un 51.9 89 0.0019 28.6 8.4 101 36-137 29-150 (166)
44 PRK06490 glutamine amidotransf 51.7 75 0.0016 30.8 8.3 100 27-136 5-109 (239)
45 PF06051 DUF928: Domain of Unk 51.4 28 0.00061 32.7 5.1 41 330-379 41-81 (189)
46 PRK11070 ssDNA exonuclease Rec 50.3 1.5E+02 0.0032 32.9 11.1 52 90-149 111-163 (575)
47 PRK06934 flavodoxin; Provision 47.4 1.2E+02 0.0026 29.3 8.8 54 74-131 125-185 (221)
48 PF08468 MTS_N: Methyltransfer 47.3 20 0.00044 32.6 3.3 55 76-131 67-122 (155)
49 cd03147 GATase1_Ydr533c_like T 46.9 75 0.0016 30.7 7.4 69 43-112 25-130 (231)
50 PRK06774 para-aminobenzoate sy 46.7 73 0.0016 29.4 7.1 92 33-136 2-95 (191)
51 PRK06242 flavodoxin; Provision 46.5 1.5E+02 0.0032 25.8 8.8 58 76-137 41-108 (150)
52 TIGR00537 hemK_rel_arch HemK-r 46.2 1.4E+02 0.003 27.0 8.7 37 99-135 124-161 (179)
53 PRK07649 para-aminobenzoate/an 46.0 79 0.0017 29.6 7.3 94 33-137 2-96 (195)
54 cd08374 C2F_Ferlin C2 domain s 45.6 35 0.00075 30.3 4.5 39 343-381 23-63 (133)
55 PF13709 DUF4159: Domain of un 45.1 59 0.0013 30.9 6.2 52 78-130 53-108 (207)
56 PRK05452 anaerobic nitric oxid 44.6 1.9E+02 0.0042 31.0 10.8 105 28-136 250-369 (479)
57 PLN02931 nucleoside diphosphat 44.4 49 0.0011 30.9 5.5 102 11-127 8-116 (177)
58 TIGR01754 flav_RNR ribonucleot 44.4 2.1E+02 0.0046 24.8 9.7 96 31-131 2-111 (140)
59 TIGR01382 PfpI intracellular p 44.0 2.1E+02 0.0045 25.3 9.4 84 31-115 1-98 (166)
60 PLN02335 anthranilate synthase 43.5 47 0.001 31.8 5.4 61 25-89 13-73 (222)
61 COG3019 Predicted metal-bindin 42.3 2.1E+02 0.0045 26.0 8.7 70 47-118 41-113 (149)
62 cd02071 MM_CoA_mut_B12_BD meth 41.7 81 0.0017 27.0 6.1 84 47-133 18-104 (122)
63 PF05753 TRAP_beta: Translocon 41.6 2.4E+02 0.0053 26.3 9.6 112 310-433 47-169 (181)
64 cd03169 GATase1_PfpI_1 Type 1 40.6 1.5E+02 0.0033 26.8 8.1 36 31-66 1-36 (180)
65 PF03633 Glyco_hydro_65C: Glyc 39.4 29 0.00062 25.4 2.5 34 366-399 2-35 (54)
66 PF12724 Flavodoxin_5: Flavodo 39.2 1.2E+02 0.0026 26.5 7.0 53 33-90 1-55 (143)
67 PRK11921 metallo-beta-lactamas 38.1 2.6E+02 0.0055 29.1 10.3 106 28-137 246-366 (394)
68 PRK11104 hemG protoporphyrinog 37.9 82 0.0018 29.0 5.9 67 31-106 2-70 (177)
69 PHA02909 hypothetical protein; 37.9 10 0.00022 28.8 -0.2 23 412-434 24-47 (72)
70 PRK10569 NAD(P)H-dependent FMN 37.8 2.4E+02 0.0053 26.2 9.1 110 31-144 2-141 (191)
71 PRK11574 oxidative-stress-resi 37.1 1.6E+02 0.0035 26.9 7.9 36 29-64 2-37 (196)
72 PHA03392 egt ecdysteroid UDP-g 37.0 35 0.00076 36.9 3.7 38 28-65 19-58 (507)
73 PRK08007 para-aminobenzoate sy 36.8 1.2E+02 0.0026 28.0 6.9 93 33-136 2-95 (187)
74 PRK04155 chaperone protein Hch 36.7 1.7E+02 0.0037 29.4 8.3 38 29-66 49-100 (287)
75 PF04244 DPRP: Deoxyribodipyri 36.6 68 0.0015 31.0 5.3 40 28-67 20-73 (224)
76 cd01750 GATase1_CobQ Type 1 gl 35.6 85 0.0018 29.2 5.7 61 42-112 9-76 (194)
77 PRK11249 katE hydroperoxidase 35.3 1.8E+02 0.0038 33.4 8.9 106 26-137 594-716 (752)
78 cd02858 Esterase_N_term Estera 34.9 70 0.0015 25.7 4.4 45 330-378 13-58 (85)
79 PF00919 UPF0004: Uncharacteri 34.9 76 0.0017 26.5 4.7 52 44-108 15-66 (98)
80 PRK06895 putative anthranilate 34.7 79 0.0017 29.2 5.3 50 33-88 4-53 (190)
81 CHL00101 trpG anthranilate syn 34.6 1.1E+02 0.0025 28.2 6.3 93 33-136 2-95 (190)
82 COG0626 MetC Cystathionine bet 34.6 1.2E+02 0.0026 31.9 7.1 91 27-121 100-190 (396)
83 PF10611 DUF2469: Protein of u 34.3 29 0.00062 29.0 1.9 44 369-414 23-67 (101)
84 TIGR01465 cobM_cbiF precorrin- 34.2 1.9E+02 0.0042 27.2 8.0 102 29-133 71-180 (229)
85 PRK00170 azoreductase; Reviewe 34.2 2.9E+02 0.0062 25.3 9.0 38 31-68 3-47 (201)
86 TIGR01467 cobI_cbiL precorrin- 33.8 2.3E+02 0.005 26.9 8.5 98 28-132 89-191 (230)
87 PF03698 UPF0180: Uncharacteri 33.3 68 0.0015 26.1 3.9 41 42-90 7-47 (80)
88 COG2248 Predicted hydrolase (m 33.2 2.5E+02 0.0054 28.1 8.4 96 42-147 117-248 (304)
89 PRK01077 cobyrinic acid a,c-di 32.9 1.1E+02 0.0024 32.5 6.7 75 30-112 246-326 (451)
90 PRK13527 glutamine amidotransf 32.8 77 0.0017 29.6 4.9 76 31-112 2-81 (200)
91 COG2247 LytB Putative cell wal 32.7 2.4E+02 0.0051 29.0 8.5 42 96-137 63-106 (337)
92 PF11896 DUF3416: Domain of un 32.3 55 0.0012 30.8 3.8 67 307-382 20-90 (187)
93 PRK04165 acetyl-CoA decarbonyl 32.1 92 0.002 33.4 5.8 82 83-165 264-346 (450)
94 PF11869 DUF3389: Protein of u 31.5 50 0.0011 26.5 2.8 31 103-134 36-74 (75)
95 COG4090 Uncharacterized protei 30.9 64 0.0014 28.8 3.6 30 80-111 87-117 (154)
96 cd02861 E_set_proteins_like E 30.9 52 0.0011 26.1 3.0 28 352-379 29-56 (82)
97 PF02922 CBM_48: Carbohydrate- 30.6 1.1E+02 0.0023 24.0 4.7 53 329-382 17-74 (85)
98 TIGR00644 recJ single-stranded 30.6 4.3E+02 0.0093 28.8 10.9 92 28-148 53-146 (539)
99 TIGR02336 1,3-beta-galactosyl- 29.8 1.1E+02 0.0024 34.4 6.0 95 44-144 469-574 (719)
100 PRK08857 para-aminobenzoate sy 29.7 2.1E+02 0.0045 26.5 7.3 93 33-136 2-95 (193)
101 cd01741 GATase1_1 Subgroup of 29.6 2.8E+02 0.006 25.2 8.0 65 45-112 13-85 (188)
102 COG0426 FpaA Uncharacterized f 29.6 4.2E+02 0.0091 27.9 10.0 106 31-137 248-363 (388)
103 TIGR00768 rimK_fam alpha-L-glu 29.5 1.7E+02 0.0037 27.9 6.9 97 31-136 1-105 (277)
104 TIGR03567 FMN_reduc_SsuE FMN r 29.2 4.3E+02 0.0093 23.8 9.8 88 47-137 21-134 (171)
105 COG4567 Response regulator con 29.1 40 0.00087 31.0 2.1 51 29-81 8-58 (182)
106 PRK00107 gidB 16S rRNA methylt 29.0 1.6E+02 0.0035 27.4 6.4 97 31-137 70-167 (187)
107 cd02067 B12-binding B12 bindin 29.0 1.4E+02 0.0031 25.0 5.6 83 47-133 18-104 (119)
108 PF09825 BPL_N: Biotin-protein 28.8 1.5E+02 0.0033 30.9 6.6 157 31-201 2-179 (367)
109 PRK01372 ddl D-alanine--D-alan 28.6 2.1E+02 0.0046 28.0 7.6 84 46-137 26-116 (304)
110 PRK08811 uroporphyrinogen-III 28.2 3E+02 0.0066 27.0 8.5 63 23-89 12-80 (266)
111 PF05175 MTS: Methyltransferas 28.1 66 0.0014 29.1 3.5 82 30-119 55-144 (170)
112 COG3470 Tpd Uncharacterized pr 27.9 81 0.0018 29.0 3.9 22 313-334 64-92 (179)
113 PRK09754 phenylpropionate diox 27.7 1.8E+02 0.004 29.9 7.2 70 64-133 86-169 (396)
114 COG0512 PabA Anthranilate/para 27.6 2.1E+02 0.0045 27.2 6.7 93 32-137 3-98 (191)
115 CHL00197 carA carbamoyl-phosph 26.5 1.8E+02 0.004 30.4 6.8 92 30-134 192-284 (382)
116 PRK10653 D-ribose transporter 26.2 4.2E+02 0.0091 25.5 9.1 49 13-62 11-62 (295)
117 COG1438 ArgR Arginine represso 26.0 2.1E+02 0.0045 26.1 6.2 85 44-133 22-117 (150)
118 TIGR01680 Veg_Stor_Prot vegeta 25.9 2E+02 0.0044 28.8 6.6 71 47-117 152-230 (275)
119 PF02310 B12-binding: B12 bind 25.8 2.3E+02 0.005 23.4 6.3 86 45-133 17-106 (121)
120 KOG4434 Molecular chaperone SE 25.6 63 0.0014 33.6 3.1 77 330-410 414-498 (520)
121 COG1587 HemD Uroporphyrinogen- 25.1 1.7E+02 0.0036 28.3 5.9 89 29-133 123-224 (248)
122 PRK06015 keto-hydroxyglutarate 25.0 3.8E+02 0.0083 25.5 8.1 100 29-137 3-103 (201)
123 TIGR00379 cobB cobyrinic acid 24.7 1.3E+02 0.0028 32.1 5.4 74 31-112 246-325 (449)
124 PF00781 DAGK_cat: Diacylglyce 24.7 1.8E+02 0.0039 24.8 5.5 97 31-137 1-107 (130)
125 PF00072 Response_reg: Respons 24.7 2.5E+02 0.0054 22.2 6.1 79 47-133 13-95 (112)
126 cd04413 NDPk_I Nucleoside diph 24.1 3.3E+02 0.0072 23.7 7.1 83 30-127 1-87 (130)
127 PRK08105 flavodoxin; Provision 24.0 2.7E+02 0.0059 24.8 6.6 102 30-136 2-120 (149)
128 cd03135 GATase1_DJ-1 Type 1 gl 24.0 2.8E+02 0.0062 24.1 6.8 54 34-87 3-69 (163)
129 PF15260 FAM219A: Protein fami 23.7 55 0.0012 28.7 1.9 48 24-72 41-104 (125)
130 cd06167 LabA_like LabA_like pr 23.5 2.7E+02 0.0058 24.1 6.5 79 43-127 52-143 (149)
131 PRK14582 pgaB outer membrane N 23.2 5.5E+02 0.012 29.1 10.1 39 96-134 89-135 (671)
132 PF15020 CATSPERD: Cation chan 23.1 1.6E+02 0.0035 33.4 5.9 41 364-406 643-683 (733)
133 PF15284 PAGK: Phage-encoded v 22.8 60 0.0013 25.0 1.7 30 1-30 1-32 (61)
134 TIGR00288 conserved hypothetic 22.7 1.3E+02 0.0028 27.7 4.3 74 47-129 70-151 (160)
135 PTZ00093 nucleoside diphosphat 22.6 2.4E+02 0.0052 25.4 6.0 83 30-127 3-89 (149)
136 PRK11914 diacylglycerol kinase 22.5 1.4E+02 0.0031 29.5 5.1 96 29-134 8-110 (306)
137 TIGR01675 plant-AP plant acid 22.5 2.6E+02 0.0055 27.2 6.5 70 47-117 127-204 (229)
138 PLN02617 imidazole glycerol ph 22.5 2.4E+02 0.0051 31.0 7.0 75 26-112 2-83 (538)
139 PRK15408 autoinducer 2-binding 22.3 5E+02 0.011 26.2 9.0 80 28-112 22-109 (336)
140 TIGR00640 acid_CoA_mut_C methy 22.0 2E+02 0.0043 25.3 5.2 83 48-133 22-107 (132)
141 cd03084 phosphohexomutase The 21.9 3E+02 0.0065 27.9 7.3 56 80-137 186-245 (355)
142 smart00562 NDK These are enzym 21.9 2.5E+02 0.0053 24.5 5.8 84 30-127 1-87 (135)
143 COG0716 FldA Flavodoxins [Ener 21.9 2.9E+02 0.0063 24.3 6.4 74 30-110 2-77 (151)
144 COG2813 RsmC 16S RNA G1207 met 21.8 2.2E+02 0.0047 28.9 6.0 79 30-116 182-267 (300)
145 PRK03094 hypothetical protein; 21.8 1.7E+02 0.0037 23.9 4.3 40 42-90 7-47 (80)
146 PRK14541 nucleoside diphosphat 21.7 5.7E+02 0.012 22.7 8.3 83 30-127 2-88 (140)
147 smart00675 DM11 Domains in hyp 21.5 96 0.0021 28.6 3.2 22 312-333 58-79 (164)
148 PHA02692 hypothetical protein; 21.5 30 0.00064 27.4 -0.1 39 396-434 27-66 (70)
149 PF05751 FixH: FixH; InterPro 21.2 1.8E+02 0.004 25.3 4.9 41 350-391 103-143 (146)
150 PRK01175 phosphoribosylformylg 21.0 5.3E+02 0.011 25.4 8.5 97 29-135 3-110 (261)
151 PRK08114 cystathionine beta-ly 20.9 2.4E+02 0.0051 29.6 6.4 89 27-119 99-188 (395)
152 PF06144 DNA_pol3_delta: DNA p 20.7 4.2E+02 0.0092 23.2 7.3 52 81-137 93-147 (172)
153 PRK07765 para-aminobenzoate sy 20.7 3.9E+02 0.0085 25.3 7.4 84 47-136 15-99 (214)
154 PRK09004 FMN-binding protein M 20.6 5.9E+02 0.013 22.4 10.2 100 31-137 3-119 (146)
155 cd05803 PGM_like4 This PGM-lik 20.6 3.8E+02 0.0083 28.2 8.0 56 80-137 245-304 (445)
156 PF13778 DUF4174: Domain of un 20.4 4.8E+02 0.01 22.3 7.2 34 29-62 9-42 (118)
157 PLN02625 uroporphyrin-III C-me 20.3 4.8E+02 0.01 25.4 8.2 117 28-149 91-216 (263)
158 TIGR01451 B_ant_repeat conserv 20.3 1.3E+02 0.0028 22.1 3.1 31 306-341 4-34 (53)
159 PF00590 TP_methylase: Tetrapy 20.3 3.8E+02 0.0082 24.5 7.1 98 28-130 75-180 (210)
160 cd03130 GATase1_CobB Type 1 gl 20.2 2.3E+02 0.005 26.4 5.6 68 38-112 6-79 (198)
161 PRK09489 rsmC 16S ribosomal RN 20.0 2.6E+02 0.0057 28.6 6.4 54 77-131 75-129 (342)
162 PRK09739 hypothetical protein; 20.0 2.2E+02 0.0048 26.3 5.5 37 30-66 4-44 (199)
No 1
>KOG2754 consensus Oligosaccharyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-137 Score=1007.91 Aligned_cols=419 Identities=56% Similarity=0.947 Sum_probs=401.3
Q ss_pred HHhhhhccccccCCCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcC
Q 013791 13 SLIPLFSVAFSPENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERF 92 (436)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~ 92 (436)
+||++..++.+ .+.|+|||+|+..++++||.|+++|++|||+++++.++|+++.|++||+++|||||||+|+++.|
T Consensus 11 llla~~~~v~~----~~~RtLVL~d~~~~~ethSvFl~sLkdRgf~L~~~~a~dssl~L~~Ygq~LyDnlIifap~~e~f 86 (443)
T KOG2754|consen 11 LLLALIGFVLS----QAARTLVLLDNLAVKETHSVFLKSLKDRGFKLTYKLADDSSLALFKYGQRLYDNLIIFAPSVENF 86 (443)
T ss_pred HHHHHHHHHhc----ccCcEEEEeeccccccchhhhhhhHHhcCceeEEEecCCchhHHHHhhhHhhccEEEecCchhhc
Confidence 55666654333 34599999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccceec
Q 013791 93 GGSIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKADVIL 172 (436)
Q Consensus 93 ~~~l~~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~~~~~~~VvDhf~~~~~~~~~~~~~iv~~~~i~~~~i~ 172 (436)
|++++++.|.+|+|+|||||+++++..++.||+|++||||+++|+ ++.||||++|+..++.++|+++.++++++++.|+
T Consensus 87 gg~is~k~l~~Fvd~gGnvlv~ass~~~d~iRe~~~E~g~~~~e~-~~~ViDH~~~d~s~~sgdhtli~~~nl~~~~~Iv 165 (443)
T KOG2754|consen 87 GGSISVKSLAKFVDSGGNVLVAASSAIGDAIREFASECGIEFDEE-GAAVIDHHNYDVSSDSGDHTLIVADNLLKAPYIV 165 (443)
T ss_pred CCCCCHHHHHHHHhCCCcEEEEcCCcccHHHHHHHHHhCcccCcc-cceeeeeeeccccCCCCCeEEEeecccccCceee
Confidence 999999999999999999999999999999999999999999999 8999999999987788899999998899999999
Q ss_pred cCCcccCceeeeceeEEeecCCceEEeeeEeCCcceecCCCCCCCCCCCCCCCceeeEEEEEecCCcEEEEEeccccccc
Q 013791 173 GSKKIEAPVLFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGSLSMFSN 252 (436)
Q Consensus 173 ~~~~~~~~vl~~g~g~~l~~~n~l~~pIL~a~~tsys~~~~~~~~~~~~~~G~~~~LvaalQ~~nnaRivv~GS~d~fSn 252 (436)
+..+...|++|+|+||.++|+||++.|||+|++|||+++|+.+....||++|+|+.||+++|+||||||+|+||.|||||
T Consensus 166 g~~~~~~piLfrgig~~l~~~n~lvl~IL~a~~TsYs~np~a~~s~np~a~Gs~~~LV~~lQarNNARvv~sGS~d~fsd 245 (443)
T KOG2754|consen 166 GKSKRAAPILFRGIGHVLGPTNPLVLPILRASPTSYSYNPEAKVSCNPWAAGSQTLLVSGLQARNNARVVFSGSSDFFSD 245 (443)
T ss_pred ccccccCCeeeecchhhcCCCCcceeeeecCCCcceecCcccccccCccccccceEEEEeeeccCCceEEEeccHHhhhc
Confidence 88765689999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred ccccccccccCCCccccccccHHHHHHHhhcccCcCceeEeeeeEEeecCCCCCCc-ceEeCCceEEEEEEEEEeCCeee
Q 013791 253 RFFRSGVQKAGSSIKHEKSGNEQFLTEISKWVFHERGHLKAVNVRHHKVGESDEPA-IYRINDDLEYSVEIYEWSGTSWE 331 (436)
Q Consensus 253 ~~~~~~v~~~~~~~~~~~~~N~~f~~~l~~W~F~e~gvLr~~~~~H~~~~~~~~~~-~Y~i~d~v~y~i~i~e~~~~~W~ 331 (436)
++|.+.++..++.....++||++|+.+|.+|+|+|+||||+.++.|||++|+.+|. .|||||+|+|||+|+||++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~sgN~~fA~~lskWvF~E~gvLr~~~~~hhkvget~~p~e~Y~IkD~viySI~i~el~~g~w~ 325 (443)
T KOG2754|consen 246 EFFSSQVQSASSSVQYEQSGNQEFATELSKWVFKEKGVLRVGNVVHHKVGETLPPEEAYRIKDDVIYSIGISELSGGEWV 325 (443)
T ss_pred ccccccccccCCcchhhccccHHHHHHHHHhhhcccceEEeeeceecccCCcCCCccceeecccEEEEEEEEEecCCeee
Confidence 99999999887777788999999999999999999999999999999999998766 89999999999999999999999
Q ss_pred ecccCCeEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcccccccCC
Q 013791 332 PYVSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEYERFLPAA 411 (436)
Q Consensus 332 P~~~ddiQlEf~mldP~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey~Rfi~~a 411 (436)
||+||||||||+|||||+|++|++.+.|.|++.||+||+||||||+|||||+|||+|.+++|++||||+||||||||++|
T Consensus 326 P~~adDvQlEfv~iDPyvR~tL~~~~~g~~~~~FklPDvyGvFqFkvdY~r~GyT~l~~~~qvsvRpl~h~eYeRfIpsA 405 (443)
T KOG2754|consen 326 PFVADDVQLEFVRIDPYVRTTLKPSGQGYYSAEFKLPDVYGVFQFKVDYRRLGYTHLYDKTQVSVRPLAHTEYERFIPSA 405 (443)
T ss_pred eecccceEEEEEEeCchheeEEecCCCceEEEEEecCCeeceEEEEEecccccceeeeccceEeeeeccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhheeeeeccC
Q 013791 412 YPYYGSAFSMMAGFFIFTIVHLYSK 436 (436)
Q Consensus 412 ~pyy~s~~s~~~g~~~F~~~~L~~~ 436 (436)
||||+|||+||+|||+|+++||+||
T Consensus 406 ypYyas~fs~m~g~~~Fs~vfL~~k 430 (443)
T KOG2754|consen 406 YPYYASCFSMMAGFFLFSFVFLYHK 430 (443)
T ss_pred chHHHHHHHHHHHHheeeEEEEEec
Confidence 9999999999999999999999987
No 2
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=100.00 E-value=1e-132 Score=1023.44 Aligned_cols=398 Identities=53% Similarity=0.933 Sum_probs=378.1
Q ss_pred EEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcE
Q 013791 32 VLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDL 111 (436)
Q Consensus 32 ~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNi 111 (436)
||||+|+..++.+||+||++|++|||+|+++.++|++++|+++||++|||||||+|+.+.||++++++.|++|+|+||||
T Consensus 1 ~LVllD~~~~~~~yS~Ff~~L~~rg~~l~~~~~~d~~l~L~~~ge~~YD~LIif~~~~k~~g~~ls~~~ll~Fvd~GgNi 80 (423)
T PF03345_consen 1 TLVLLDNRAIKETYSTFFNSLKERGYELTFKSADDESLSLFKYGERLYDHLIIFPPSVKEFGGSLSPKTLLDFVDNGGNI 80 (423)
T ss_pred CEEEecCccchhhHHHHHHHHHhCCCEEEEecCCCCCcchhhCChhhcceEEEeCCcccccCCCCCHHHHHHHHhCCCcE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-CcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEe--eccccccceeccCCcccCceeeeceeE
Q 013791 112 IVAADSN-ASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIA--SDDFIKADVILGSKKIEAPVLFQGIGH 188 (436)
Q Consensus 112 Li~~~~~-~~~~lr~ll~ElGI~~~~~~~~~VvDhf~~~~~~~~~~~~~iv--~~~~i~~~~i~~~~~~~~~vl~~g~g~ 188 (436)
|+++++. .++.+|.||+||||+++|+ |+.|+|||+++..++.++|+.++ .++.+.+..+.+... .|++|+|+||
T Consensus 81 lv~~s~~~~~~~ir~~~~E~gi~~~~~-~~~viDHf~~~~~~~~~~h~~i~~~~~~~i~~~~~~~~~~--~pilf~G~g~ 157 (423)
T PF03345_consen 81 LVAGSSDAIPDSIREFANELGIEFDPK-GSKVIDHFNYDSSSDSEDHTVIVLSSNNLIKSSVIVGFKT--KPILFRGVGH 157 (423)
T ss_pred EEEeCCCcCcHHHHHHHHHCCeEECCC-CCEEEcCCCCcccccccCcceEEecCCccccCcccccCCC--CcEEEEeEEE
Confidence 9999998 8999999999999999998 99999999999876777898887 456777777765533 6899999999
Q ss_pred EeecCCceEEeeeEeCCcceecCCCCCCCC--CCCCCCCceeeEEEEEecCCcEEEEEecccccccccccccccccCCCc
Q 013791 189 SLNPANSLVLKVLSASSSAYSANPKSKLSN--PPSLTGSAISLVSVVQARNNARILITGSLSMFSNRFFRSGVQKAGSSI 266 (436)
Q Consensus 189 ~l~~~n~l~~pIL~a~~tsys~~~~~~~~~--~~~~~G~~~~LvaalQ~~nnaRivv~GS~d~fSn~~~~~~v~~~~~~~ 266 (436)
+++ +||+++|||+|++|||+++++++... +||++|+|++||+|+|+|||||++|+||.|||||+||+++++.+ .
T Consensus 158 ~l~-~n~l~~pIL~a~~Tays~~~~~~~~~~~~~~~~G~q~~LVsa~QarNNARv~~~GS~d~fsd~~f~~~v~~~---~ 233 (423)
T PF03345_consen 158 LLD-NNPLVFPILRAPSTAYSYDPKEPIEEYDDPWAAGSQISLVSAFQARNNARVVFSGSLDMFSDEFFDSKVQKA---G 233 (423)
T ss_pred Eec-CCCceeeeeccCCceeccccccccccccchhhccccceEEEEEecccCcEEEEEecHHHhccHHHhhhhhhc---c
Confidence 999 59999999999999999999877664 49999999999999999999999999999999999999988876 3
Q ss_pred cccccccHHHHHHHhhcccCcCceeEeeeeEEeecCCCC--CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEE
Q 013791 267 KHEKSGNEQFLTEISKWVFHERGHLKAVNVRHHKVGESD--EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYM 344 (436)
Q Consensus 267 ~~~~~~N~~f~~~l~~W~F~e~gvLr~~~~~H~~~~~~~--~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~m 344 (436)
+..+++|++||++|++|+|||+||||+.+++|||+++++ +|.+|||||+|+|+|+|+||++|+|+||++|||||||+|
T Consensus 234 ~~~~~~N~~f~~~l~~WtF~e~gvLr~~~~~H~~~~~~~~~~p~~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~m 313 (423)
T PF03345_consen 234 KKSKSGNREFAKELSKWTFQEKGVLRVSNVKHHKVGETEYSNPEMYRIKDDVEYSIEISEWNNGKWVPFKADDIQLEFVM 313 (423)
T ss_pred cccchhHHHHHHHHHHhHHhhcCeEeecceEEEeCCCcCcCCCcceEECCcEEEEEEEEEEeCCeEecCCCCcEEEEEEE
Confidence 346899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred eCceEeecccc----CCCceEEEEEecCCceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcccc--cccCCcchhhHH
Q 013791 345 MSPYVLKTLST----DQKGHYSAEFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEYER--FLPAAYPYYGSA 418 (436)
Q Consensus 345 ldP~~R~~L~~----~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey~R--fi~~a~pyy~s~ 418 (436)
||||+|++|++ .++|+|+++||+|||||||||+|||||+|||+|++++|||||||||||||| ||++|||||+||
T Consensus 314 LDPy~R~~L~~~~~~~~~~~Y~~~FklPD~hGVF~F~vdY~R~G~t~l~~~~~v~VRpl~Hdey~Rs~fI~~A~PYyas~ 393 (423)
T PF03345_consen 314 LDPYVRLTLKPSYSTDDNGTYSTTFKLPDVHGVFTFKVDYKRPGYTFLEEKTQVSVRPLAHDEYPRSWFITNAYPYYASA 393 (423)
T ss_pred cCcEEEcccccccccCCCCEEEEEEECCCccceEEEEEEEecCceeeEEEEEEEeccCCccccCccccccccccHHHHHH
Confidence 99999999998 789999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhhheeeeeccC
Q 013791 419 FSMMAGFFIFTIVHLYSK 436 (436)
Q Consensus 419 ~s~~~g~~~F~~~~L~~~ 436 (436)
||||+|||+|+++||||+
T Consensus 394 ~s~m~gf~lF~~~fL~~~ 411 (423)
T PF03345_consen 394 FSMMIGFFLFVFVFLYHK 411 (423)
T ss_pred HHHHHHHHhheeeEEEec
Confidence 999999999999999985
No 3
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.70 E-value=4.5e-16 Score=167.56 Aligned_cols=259 Identities=11% Similarity=0.117 Sum_probs=164.6
Q ss_pred CCCCeEEEEEcCcccccc--hhHHHHHHHhCCceEEEecCCCCCcccccccc----cccCEEEEeCCCCCcCCCCCCHHH
Q 013791 27 PTDRRVLVLVDDFAIKSS--HSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQ----YLYDALVLFCPSVERFGGSIDVAS 100 (436)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~--~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge----~~yd~LII~~p~~~~~~~~l~~~~ 100 (436)
....+++.++.++++... ...+.+.|+ ++|++....++.. ....... ..+|.|||..|+.+ |. .-+...
T Consensus 180 ~~~~~~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~--~~~~~~ip~~l~d~d~LvI~~P~~~-ls-~~e~~~ 254 (552)
T TIGR03521 180 NPREKRIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSV--AANPAKTLADLKKFDLIVIAKPTEA-FS-EREKYI 254 (552)
T ss_pred CccCceEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhc--ccCcccccccccCcCEEEEeCCCcc-CC-HHHHHH
Confidence 345678888888877533 468889998 8999976433211 0001111 24699999999877 52 357799
Q ss_pred HHHHHHCCCcEEEEeCCCC------------------cHHHHHHHHHcCceecCCCCeEEEeccCccccCCCC---C---
Q 013791 101 IVDFVDSGHDLIVAADSNA------------------SDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDG---D--- 156 (436)
Q Consensus 101 L~~Fvd~GGNiLi~~~~~~------------------~~~lr~ll~ElGI~~~~~~~~~VvDhf~~~~~~~~~---~--- 156 (436)
|.+|+++||++|++++|.. ..++..|++++||.+.++ +|+|..........+ +
T Consensus 255 Ldqfl~~GG~ll~~~dp~~~~~~~~~~~~g~~~~~~~~~~L~~Ll~~~Gi~~~~~---~V~D~~~~~~~~~~g~~g~~~~ 331 (552)
T TIGR03521 255 LDQYIMNGGKALFLVDAVAMEMDSLYNGDGATFALPRDLNLDDLLFKYGIRINPD---LVEDLNSAPIVLATGNQGNNTQ 331 (552)
T ss_pred HHHHHHcCCeEEEEecCcccccccccccCCccccCCCCCCHHHHHHHhCeEeCcC---eEecCcCCceeeecCCcCCcce
Confidence 9999999999999998732 158999999999999997 789944321100000 0
Q ss_pred ---ceEEeec--cccccceeccCCcccCceeeeceeEEeecCCceEEeeeEeCCcceecCCCC-------CCCC--CCCC
Q 013791 157 ---HTLIASD--DFIKADVILGSKKIEAPVLFQGIGHSLNPANSLVLKVLSASSSAYSANPKS-------KLSN--PPSL 222 (436)
Q Consensus 157 ---~~~iv~~--~~i~~~~i~~~~~~~~~vl~~g~g~~l~~~n~l~~pIL~a~~tsys~~~~~-------~~~~--~~~~ 222 (436)
++....+ ..-.+++|+.+. ...+++.+.++...+++-...|+|++++.||...... +... ....
T Consensus 332 ~~~~~~~~~p~~~~~~~~piT~~l--~~v~~~~a~~i~~~~~~~~~tpLL~TS~~s~~~~~~~~i~~~~~~~~~dp~~~~ 409 (552)
T TIGR03521 332 YQPLPWPYYPQVYSFNKHPITKNL--DAVKFEFASTIDTLKNGIKKTPLLQTSPYSKIEGTPAQISLSEVTEEPDPESYN 409 (552)
T ss_pred ecccCcccccccccCCCCccccCc--ccEEEeccceeEecCCCeEEEEeEEeChhhhccCCCccccHHHhhcCCChhHcC
Confidence 1111122 111346666432 1234666666665444458999999999998432100 0000 1122
Q ss_pred CCCceeeEEEEEe---------------------cCCcEEEEEeccccccccccccccccc-CC-CccccccccHHHHHH
Q 013791 223 TGSAISLVSVVQA---------------------RNNARILITGSLSMFSNRFFRSGVQKA-GS-SIKHEKSGNEQFLTE 279 (436)
Q Consensus 223 ~G~~~~LvaalQ~---------------------~nnaRivv~GS~d~fSn~~~~~~v~~~-~~-~~~~~~~~N~~f~~~ 279 (436)
.| ...|++++++ .+++||+|+||.||++|.++...-.-+ |- .......+|.+|++|
T Consensus 410 ~g-~~~la~~l~g~~~s~f~~~~~~~~~~~~~~~~~~~rvvvvgd~d~l~d~~~~~~~~~~~g~~~~~~~~~~N~df~lN 488 (552)
T TIGR03521 410 LG-NLPLAVLLEGSFTSAYKNRILPFEIPFKRDQGKPTKMIVVADGDVIRNQLDNNGKPLELGYDRFTGNLYGNKEFLLN 488 (552)
T ss_pred CC-CeEEEEEEEeccccccCCCCCccccccccccCCCceEEEEechHHhhhhHhhcCCccccccchhccccCccHHHHHH
Confidence 23 5567788764 257899999999999999873210000 00 001123589999999
Q ss_pred HhhcccCcCceeEeeee
Q 013791 280 ISKWVFHERGHLKAVNV 296 (436)
Q Consensus 280 l~~W~F~e~gvLr~~~~ 296 (436)
++.|+.++++.|.+.+-
T Consensus 489 ~vd~L~~~~~li~IR~k 505 (552)
T TIGR03521 489 AVNYLLDDTGLINIRSK 505 (552)
T ss_pred HHHHhcCCchhhhcccc
Confidence 99999999999866543
No 4
>KOG3861 consensus Sensory cilia assembly protein [Extracellular structures]
Probab=99.11 E-value=4.4e-10 Score=110.18 Aligned_cols=168 Identities=17% Similarity=0.268 Sum_probs=114.6
Q ss_pred CEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCC----CcHHHHHHHHHcCceecCCCCeEEEeccC-ccccCCC
Q 013791 80 DALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSN----ASDLIREVATECGVDFDEDPAAMVIDHIN-YAVSNFD 154 (436)
Q Consensus 80 d~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~----~~~~lr~ll~ElGI~~~~~~~~~VvDhf~-~~~~~~~ 154 (436)
-.+|+..|+.+ |+. -+.+.|..|++.||.++|+++.+ ...+++.+++||||.+..+ ++|-.++. |-+ +
T Consensus 54 k~~i~agP~~~-Ft~-~Efevlkkyve~GGsl~vllGEGGE~rf~tnvNf~le~YGI~vN~D--tVvR~vy~KyFh---P 126 (438)
T KOG3861|consen 54 KIFILAGPQDR-FTE-DEFEVLKKYVEVGGSLVVLLGEGGEPRFNTNVNFFLEQYGIYVNGD--TVVRPVYYKYFH---P 126 (438)
T ss_pred eEEEecCcccc-cch-hHHHHHHHHHhcCCeEEEEecCCCCccccccHHHHHHHhCeEecCC--ceeehhhhhccC---h
Confidence 46777777755 854 78899999999999999887643 3479999999999999996 43444432 221 1
Q ss_pred CCceEEeeccccccce--------e--ccCC--cccCc---eeeeceeEEeecCCceEEeeeEeCCcceecCCCCCCCCC
Q 013791 155 GDHTLIASDDFIKADV--------I--LGSK--KIEAP---VLFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNP 219 (436)
Q Consensus 155 ~~~~~iv~~~~i~~~~--------i--~~~~--~~~~~---vl~~g~g~~l~~~n~l~~pIL~a~~tsys~~~~~~~~~~ 219 (436)
+ +.+++...++.+. + +... ..... +.|.|+.+.+ +..+.-+|++++++|..++
T Consensus 127 -K-EalV~~GVvnr~i~raa~K~v~~~v~~~~~~n~qal~F~YPyGaTL~V---~~panvvLstGsv~fP~nR------- 194 (438)
T KOG3861|consen 127 -K-EALVGGGVVNRSIWRAALKLVIEKVYYDFSDNKQALHFQYPYGATLNV---SEPANVVLSTGSVVFPFNR------- 194 (438)
T ss_pred -H-HhhhccceeeHHHHHHHHhhhHHHHHhhcccchheEEEecccCceeec---cccceeEeccCceeccCCC-------
Confidence 2 4555554433210 0 1110 11122 3445555443 4668889999999997654
Q ss_pred CCCCCCceeeEEEEEec-CCcEEEEEecccccccccccccccccCCCccccccccHHHHHHHhhcccCc
Q 013791 220 PSLTGSAISLVSVVQAR-NNARILITGSLSMFSNRFFRSGVQKAGSSIKHEKSGNEQFLTEISKWVFHE 287 (436)
Q Consensus 220 ~~~~G~~~~LvaalQ~~-nnaRivv~GS~d~fSn~~~~~~v~~~~~~~~~~~~~N~~f~~~l~~W~F~e 287 (436)
| +++-+.+. .++||.++||..||+|+|+++ ..|.+..+-+++|+...
T Consensus 195 P--------~~af~~~kN~gGki~vvGS~~mfhD~Yldk-------------eeN~kifd~~v~~L~~g 242 (438)
T KOG3861|consen 195 P--------LVAFFTNKNKGGKILVVGSGYMFHDKYLDK-------------EENDKIFDYLVKLLGGG 242 (438)
T ss_pred c--------ceeeeeccCcCceEEEeeeeeeechhhccc-------------cccchHHHHHHHHhcCC
Confidence 1 33444444 468999999999999999986 57999999999999765
No 5
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=98.92 E-value=4.8e-09 Score=103.22 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCCCCeEEEEEcCcccc----------cchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCC
Q 013791 26 NPTDRRVLVLVDDFAIK----------SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS 95 (436)
Q Consensus 26 ~~~~~r~LVl~d~~~~~----------~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ 95 (436)
+....+++.++.++++. ..++.|.+.|+++ |+|........ .-+..+|.|||+.|+.+ |. .
T Consensus 142 ~~~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~~------~IP~~~d~Lvi~~P~~~-ls-~ 212 (271)
T PF09822_consen 142 TSDEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLANE------EIPDDADVLVIAGPKTD-LS-E 212 (271)
T ss_pred hcccCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCccc------ccCCCCCEEEEECCCCC-CC-H
Confidence 34468888999888887 8999999999999 99987522211 11234499999999987 52 3
Q ss_pred CCHHHHHHHHHCCCcEEEEeCCCCc-------------HHHHHHHHHcCceecCCCCeEEEe
Q 013791 96 IDVASIVDFVDSGHDLIVAADSNAS-------------DLIREVATECGVDFDEDPAAMVID 144 (436)
Q Consensus 96 l~~~~L~~Fvd~GGNiLi~~~~~~~-------------~~lr~ll~ElGI~~~~~~~~~VvD 144 (436)
-+...|.+|+++|||+||++++... .+|.+||+++||.+.++ +|+|
T Consensus 213 ~e~~~l~~yl~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi~~~~~---~V~D 271 (271)
T PF09822_consen 213 EELYALDQYLMNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGIRINPG---LVVD 271 (271)
T ss_pred HHHHHHHHHHHcCCeEEEEECCcccccccccccccccccCHHHHHHHcCCEeCCC---EecC
Confidence 5779999999999999999998643 49999999999999997 7876
No 6
>COG3225 GldG ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility and secretion]
Probab=96.45 E-value=0.04 Score=58.36 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=46.1
Q ss_pred cCCcEEEEEecccccccccccccccccCCCccccccccHHHHHHHhhcccCcCceeEeeeeEEeecC
Q 013791 236 RNNARILITGSLSMFSNRFFRSGVQKAGSSIKHEKSGNEQFLTEISKWVFHERGHLKAVNVRHHKVG 302 (436)
Q Consensus 236 ~nnaRivv~GS~d~fSn~~~~~~v~~~~~~~~~~~~~N~~f~~~l~~W~F~e~gvLr~~~~~H~~~~ 302 (436)
+.|..+.++++.+++|+.-.... + .+-.+|.+|+.+.+.|..+.++.|-+.+--|.+..
T Consensus 431 ~~ns~~~lv~ds~~~s~~~~~q~-~-------~v~~~N~~fv~N~~d~l~g~D~fln~~Sr~~~~~p 489 (538)
T COG3225 431 RENSPAILVADSDLLSAYMANQS-Q-------QVVAGNFEFVTNIFDYLSGGDAFLNSKSRLEVRRP 489 (538)
T ss_pred ccCCceeecCcccccchhhhhcC-C-------ceeeccHHHHHHHHHHHhCCcceEeeecccccccc
Confidence 33666999999999999865531 0 12377999999999999999999988877665554
No 7
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=95.32 E-value=0.065 Score=41.70 Aligned_cols=65 Identities=17% Similarity=0.351 Sum_probs=45.3
Q ss_pred cchhHHHHHHHhCCceEEEe-cCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEe
Q 013791 43 SSHSLYFGSLTSRGFQLEFK-LADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAA 115 (436)
Q Consensus 43 ~~~S~f~~~L~~rGf~v~~~-~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~ 115 (436)
..+..|.+.|+++|.+|+.. .|.+ .|. ..-..||+.+|... +...-+.+.|.+|+++||+++|++
T Consensus 5 ~G~~a~~~~L~~~g~~v~~~~~~~~---~l~----~~~~tll~i~~~~~-~~~~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 5 NGTYALYQLLEEQGVKVERWRKPYE---ALE----ADDGTLLVIGPDLR-LSEPEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred hHHHHHHHHHHHCCCeeEEecccHH---HhC----CCCCEEEEEeCCCC-CCchHHHHHHHHHHHcCCEEEEeC
Confidence 45678999999999999843 2211 121 13368888888755 321245689999999999999863
No 8
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=95.14 E-value=0.057 Score=59.06 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=59.1
Q ss_pred eEEEEEcCcccc--cchhHHHHHHHh--CCceEEE-e-cCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHH
Q 013791 31 RVLVLVDDFAIK--SSHSLYFGSLTS--RGFQLEF-K-LADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDF 104 (436)
Q Consensus 31 r~LVl~d~~~~~--~~~S~f~~~L~~--rGf~v~~-~-~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~F 104 (436)
+.|+++|+.+.. .-.-+|.+.|+. .+|+.-. . ..++....+. .|+.+||..+..+.+ ..+.|++|
T Consensus 55 ~l~~l~d~~~~~s~~~~~n~~kil~~~K~~~~~id~~~~~~~~~p~l~-----~Y~~vII~~~~l~~l----~~~~i~~y 125 (585)
T PF09960_consen 55 KLLILYDSNGELSMDIKENFKKILEYMKIPYDTIDIAEFIKSSIPSLS-----DYRGVIILTTDLDPL----GNEAIMNY 125 (585)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHHHhccccEeeeccccccccCCccc-----ceeEEEEEecccccc----ChHHHHHH
Confidence 455599886542 223344444443 3455221 1 1122222222 358889988877755 44999999
Q ss_pred HHCCCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 013791 105 VDSGHDLIVAADSNASDLIREVATECGVDFDED 137 (436)
Q Consensus 105 vd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~~~ 137 (436)
+++|||++++..+...+.++.+ +||.-..+
T Consensus 126 V~~GG~vif~~~~~~~~~~~~I---lGI~~~~e 155 (585)
T PF09960_consen 126 VENGGTVIFATTPEKTPWLNFI---LGIRSVGE 155 (585)
T ss_pred HHcCCeEEEEeccccCcchhhe---eeeeeccc
Confidence 9999999999887766666666 77766553
No 9
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=93.92 E-value=0.94 Score=37.31 Aligned_cols=73 Identities=19% Similarity=0.465 Sum_probs=53.3
Q ss_pred CcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce----Eeecc-ccCCCceEEEEEecCCc--eeeeEEEEe
Q 013791 307 PAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTL-STDQKGHYSAEFKVPDV--YGVFQFKVE 379 (436)
Q Consensus 307 ~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~----~R~~L-~~~~~~~y~~~f~~PD~--hGvf~f~v~ 379 (436)
...||-+|.|.+.+-+-..++ +..|. .+..+++...||- .+... ..+..|.|+.+|+||+. .|.|+.++.
T Consensus 8 r~iYrPGetV~~~~~~~~~~~-~~~~~--~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDN-DFKPP--ANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECT-TCSCE--SSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred ccCcCCCCEEEEEEEEecccc-ccccc--cCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 457999999999999998883 22333 4577788889993 33344 44679999999999998 699999999
Q ss_pred eee
Q 013791 380 YQR 382 (436)
Q Consensus 380 Y~R 382 (436)
+..
T Consensus 85 ~~~ 87 (99)
T PF01835_consen 85 TDD 87 (99)
T ss_dssp ETT
T ss_pred Ecc
Confidence 953
No 10
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=93.22 E-value=0.24 Score=47.64 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=49.8
Q ss_pred cchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCC-CcCCCCCCHHHHHHHHHCCCcEEEEe
Q 013791 43 SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVDFVDSGHDLIVAA 115 (436)
Q Consensus 43 ~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~-~~~~~~l~~~~L~~Fvd~GGNiLi~~ 115 (436)
.-+..+...|+++||+|+....+|..-.|....=..||.||..+... +.+.. -..+.|.+||++||.++..=
T Consensus 23 ~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~~-eq~~~l~~~V~~GgGlv~lH 95 (215)
T cd03142 23 GMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVKD-EIVERVHRRVLDGMGLIVLH 95 (215)
T ss_pred hHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCCH-HHHHHHHHHHHcCCCEEEEC
Confidence 34667889999999999977666653223333344679999875554 43421 23388999999999999653
No 11
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=2.1 Score=46.83 Aligned_cols=93 Identities=16% Similarity=0.300 Sum_probs=63.9
Q ss_pred HHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-CCcEEEEeC---------
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-GHDLIVAAD--------- 116 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~-GGNiLi~~~--------- 116 (436)
.-.+.|++.||-++.... .+.-++-..|-.|++.++..+-|. -+.++|.+=+.+ |=++.|.++
T Consensus 653 dMY~hLR~~GYyievLg~-----PfTCFdAsqYGtLLmVD~E~~yfp--EEI~kLr~dV~n~GL~lVvF~dWYNt~vM~K 725 (1033)
T KOG4266|consen 653 DMYNHLRDAGYYIEVLGS-----PFTCFDASQYGTLLMVDLEDDYFP--EEIEKLRDDVINTGLGLVVFADWYNTDVMVK 725 (1033)
T ss_pred HHHHHHHhcceehhhhcC-----CceeccHhHCceEEEEccccccCH--HHHHHHHHHHHhcCceEEEEeccccceeeee
Confidence 344569999999986411 122234455668888888877553 477899988888 668877775
Q ss_pred -------------CCC----cHHHHHHHHHcCceecCCCCeEEEeccCcc
Q 013791 117 -------------SNA----SDLIREVATECGVDFDEDPAAMVIDHINYA 149 (436)
Q Consensus 117 -------------~~~----~~~lr~ll~ElGI~~~~~~~~~VvDhf~~~ 149 (436)
|.. -..|+.||+.+||-|.++ +.--||.-+
T Consensus 726 ~kFfDeNTRqWWtPdTGGANIPALN~LL~~fgiaFgD~---i~eG~F~l~ 772 (1033)
T KOG4266|consen 726 MKFFDENTRQWWTPDTGGANIPALNNLLASFGIAFGDK---ILEGDFSLD 772 (1033)
T ss_pred eeeeccCcceeccCCCCCcCcHhHHHHHhhhccccccc---eecceeeec
Confidence 111 268999999999999986 444466544
No 12
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=91.00 E-value=0.5 Score=44.71 Aligned_cols=60 Identities=25% Similarity=0.457 Sum_probs=33.5
Q ss_pred hhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCH---HHHHHHHHCCCcEEEEeCCC
Q 013791 45 HSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDV---ASIVDFVDSGHDLIVAADSN 118 (436)
Q Consensus 45 ~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~---~~L~~Fvd~GGNiLi~~~~~ 118 (436)
-..+.+.|.++|..+++..+++ +|.. |..||+ |.... +++ +.|.+|+++||++++..-++
T Consensus 32 ~~~~y~al~~~gi~vDvv~~~~---dL~~-----Ykllv~--P~~~~----l~~~~~~~L~~yV~~GG~li~~~~tg 94 (207)
T PF08532_consen 32 VRGWYRALRELGIPVDVVSPDD---DLSG-----YKLLVL--PSLYI----LSPEFAERLRAYVENGGTLILTPRTG 94 (207)
T ss_dssp HHHHHHHHHTTT--EEEE-TTS-----TT------SEEEE--S--SC------HHH---HHHHHT-SS-EEE-TTTT
T ss_pred HHHHHHHHHHcCCceEEecCcC---Cccc-----CcEEEE--eeEEE----EChHHHHHHHHHHHCCCEEEEEcccC
Confidence 3467889999999999997776 3444 576554 54442 345 56999999999998765443
No 13
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=90.95 E-value=0.45 Score=44.82 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=49.0
Q ss_pred HHHHHHHhCCceEEEecCCCCC--cccccccccccCEEEEeCCCCCcC--------CCCCCH---HHHHHHHHCCCcEEE
Q 013791 47 LYFGSLTSRGFQLEFKLADDPN--IGLQRYGQYLYDALVLFCPSVERF--------GGSIDV---ASIVDFVDSGHDLIV 113 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~--~~L~~~ge~~yd~LII~~p~~~~~--------~~~l~~---~~L~~Fvd~GGNiLi 113 (436)
-+++.|++-+|+|++-.+.+.. +.....+-..||.+||-+.-+..| ...+.+ +.|++|+++||-+|+
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLLM 115 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLLM 115 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEEE
Confidence 3788999999999997655543 223455667789988865543322 122333 789999999999998
Q ss_pred EeC
Q 013791 114 AAD 116 (436)
Q Consensus 114 ~~~ 116 (436)
.++
T Consensus 116 iGG 118 (254)
T COG5426 116 IGG 118 (254)
T ss_pred Ecc
Confidence 776
No 14
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=89.83 E-value=0.89 Score=43.10 Aligned_cols=204 Identities=16% Similarity=0.176 Sum_probs=95.3
Q ss_pred eEEEEEcC-cccc-----cchhHHHHHHH-hCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHH
Q 013791 31 RVLVLVDD-FAIK-----SSHSLYFGSLT-SRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (436)
Q Consensus 31 r~LVl~d~-~~~~-----~~~S~f~~~L~-~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~ 103 (436)
|+||+..+ .... .....|.+.|+ +.||+++... |. -.+....=..||.||++....+.+ ..-..+.|.+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~--~~-~~~~~~~L~~~Dvvv~~~~~~~~l-~~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTE--DP-DDLTPENLKGYDVVVFYNTGGDEL-TDEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECC--SG-GCTSHHCHCT-SEEEEE-SSCCGS--HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEe--Cc-ccCChhHhcCCCEEEEECCCCCcC-CHHHHHHHHH
Confidence 78888876 2322 23334666677 6899998652 21 011111234669999998874333 1123388999
Q ss_pred HHHCCCcEEEEe-CC-CCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccceeccCCcccCce
Q 013791 104 FVDSGHDLIVAA-DS-NASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKADVILGSKKIEAPV 181 (436)
Q Consensus 104 Fvd~GGNiLi~~-~~-~~~~~lr~ll~ElGI~~~~~~~~~VvDhf~~~~~~~~~~~~~iv~~~~i~~~~i~~~~~~~~~v 181 (436)
|+++||.++.+= .. ........+.+=+|-.+.. |-.. .+.-+.. .-.+++|+..-...-.+
T Consensus 77 ~v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~--------h~~~--------~~~~v~~-~~~~HPi~~gl~~~f~~ 139 (217)
T PF06283_consen 77 YVENGGGLVGLHGAATDSFPDWPEYNELLGGYFKG--------HPPP--------QPFTVRV-EDPDHPITRGLPESFTI 139 (217)
T ss_dssp HHHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEE--------EECE--------EEEEEEE-SSTTSCCCTTS-SEEEE
T ss_pred HHHcCCCEEEEcccccccchhHHHHHHeeCccccC--------CCCC--------ceEEEEE-cCCCChhhcCCCCCceE
Confidence 999999999664 22 2233455666666743322 1111 1111111 11346665321100000
Q ss_pred ---eeeceeEEeecCCceEEeeeEeCCcceecCCCCCCCCCCCCCCCceeeEEEEEecCCcEEEEEeccccccccccccc
Q 013791 182 ---LFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGSLSMFSNRFFRSG 258 (436)
Q Consensus 182 ---l~~g~g~~l~~~n~l~~pIL~a~~tsys~~~~~~~~~~~~~~G~~~~LvaalQ~~nnaRivv~GS~d~fSn~~~~~~ 258 (436)
+|...- . ..+.+.+|+++..++|.... ..| ....++=.....++|+..+.=..--+ .| +
T Consensus 140 ~DE~Y~~~~---~-~~~~~~vL~~~~~~~~~~~~---------~~~-~~~Pv~W~~~~GkGRvf~~~lGH~~~-~~-~-- 201 (217)
T PF06283_consen 140 YDEWYYFLR---D-PRPNVTVLLTADESSYDPEG---------GEG-GDHPVAWTREYGKGRVFYTTLGHDEE-TW-E-- 201 (217)
T ss_dssp EEEEEES-B---S----CEEEEEEEE--GGG--T---------TTS-SEEEEEEEEECTTEEEEEE----TTS-HH-H--
T ss_pred ccccccccc---C-CCCCEEEEEEEEeccccccc---------cCC-CeEEEEEEEEeCCeeEEEECCCCChh-hc-C--
Confidence 121110 1 12248888888866553210 011 11233433456779999887665332 11 1
Q ss_pred ccccCCCccccccccHHHHHHHhhcc
Q 013791 259 VQKAGSSIKHEKSGNEQFLTEISKWV 284 (436)
Q Consensus 259 v~~~~~~~~~~~~~N~~f~~~l~~W~ 284 (436)
...=++++.+-+.|+
T Consensus 202 -----------~~~~~~ll~ngi~Wa 216 (217)
T PF06283_consen 202 -----------DPDFRRLLRNGIRWA 216 (217)
T ss_dssp -----------BHHHHHHHHHHHHHC
T ss_pred -----------CHHHHHHHHHHHHhh
Confidence 134566888889996
No 15
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=89.42 E-value=0.91 Score=40.54 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=41.5
Q ss_pred cchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEE
Q 013791 43 SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIV 113 (436)
Q Consensus 43 ~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi 113 (436)
+..-.+.+.|.+.|..+++..+++. |. .|+.||+-.. ..+ +.-..+.|.+|+++||.++.
T Consensus 26 ~~~~~~~~~l~~~gi~~d~v~~~~~---l~-----~y~~vi~P~~--~~~-~~~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 26 DLALALYRALRELGIPVDVVPPDAD---LS-----GYKLVVLPDL--YLL-SDATAAALRAYVENGGTLVA 85 (154)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC---cc-----cCCEEEECch--hcC-CHHHHHHHHHHHHCCCEEEE
Confidence 4555788999999999998864432 22 5788777333 322 22346999999999995554
No 16
>PRK05568 flavodoxin; Provisional
Probab=89.32 E-value=5.1 Score=34.99 Aligned_cols=102 Identities=11% Similarity=0.148 Sum_probs=62.6
Q ss_pred CeEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013791 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (436)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd- 106 (436)
++++|+|.+.. .+.--..+.+.|++.|.+++.....+.+. .....||.||+.+|.-. ++-..+..+.+|++
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~----~~~~~~d~iilgsp~y~--~~~~~~~~~~~f~~~ 75 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASV----DDVKGADVVALGSPAMG--DEVLEEGEMEPFVES 75 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCH----HHHHhCCEEEEECCccC--cccccchhHHHHHHH
Confidence 36899998752 23333457788888999998765555432 13456799999999742 12111123333332
Q ss_pred -----CCCcEEEEeCCC-----CcHHHHHHHHHcCceecCC
Q 013791 107 -----SGHDLIVAADSN-----ASDLIREVATECGVDFDED 137 (436)
Q Consensus 107 -----~GGNiLi~~~~~-----~~~~lr~ll~ElGI~~~~~ 137 (436)
+|..+.+.+..+ ..+.+.+.++++|+.....
T Consensus 76 ~~~~~~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 76 ISSLVKGKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred hhhhhCCCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCC
Confidence 466676665422 2356677888899888775
No 17
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=85.46 E-value=2.9 Score=34.18 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=47.5
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCc-------eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 311 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSP-------YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 311 ~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP-------~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
+++...+|.|+...- +|...+-..+++|+++ .+| -+...+...++|+|.++|+ |.+.|-|+..|.|..
T Consensus 18 ~~g~~~~F~V~~~d~-~g~~~~~~~~~~~v~i--~~p~~~~~~~~~~~~v~~~~~G~y~v~y~-p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 18 VVGEPATFTVDTRDA-GGNPVSSGGDEFQVTI--TSPDGKEEPVPVPVEVIDNGDGTYTVSYT-PTEPGKYKISVKING 92 (101)
T ss_dssp ETTSEEEEEEEETTT-TSSBEESTSSEEEEEE--ESSSSESS--EEEEEEEEESSSEEEEEEE-ESSSEEEEEEEEESS
T ss_pred ECCCcEEEEEEEccC-CCCccccCCceeEEEE--eCCCCCccccccceEEEECCCCEEEEEEE-eCccEeEEEEEEECC
Confidence 677778888877632 2333333446777665 555 3445555568999999999 777899999999865
No 18
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=83.21 E-value=0.95 Score=42.21 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=44.6
Q ss_pred HHHHHHHhCCceEEEecCCCC-----CcccccccccccCEEEEeCCCCCcCC----CCCCHHHHHHHHHCCCcEEEEeCC
Q 013791 47 LYFGSLTSRGFQLEFKLADDP-----NIGLQRYGQYLYDALVLFCPSVERFG----GSIDVASIVDFVDSGHDLIVAADS 117 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~-----~~~L~~~ge~~yd~LII~~p~~~~~~----~~l~~~~L~~Fvd~GGNiLi~~~~ 117 (436)
.+...|...+++++....+++ .-.|+..+-..||.+|+-.-....+- +.-..+.|.+||++||-+++++++
T Consensus 31 ~l~~~l~~~~~~~~~~p~~~~~~~fP~~~lf~~~L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG~ 110 (177)
T PF07090_consen 31 LLHFALLRPGIEVDYIPAHEALIAFPTTLLFDEELNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIGGP 110 (177)
T ss_dssp HHHHHHHHTT-EEEEEEHHHHHHH--SSC--SHHHCT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-ST
T ss_pred HHHHHHhcCCccccccccchhhhhCCCchhhhhHHhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEeCh
Confidence 467788888999987644321 11244466678899888877666450 112348999999999999988876
Q ss_pred CC
Q 013791 118 NA 119 (436)
Q Consensus 118 ~~ 119 (436)
..
T Consensus 111 ~s 112 (177)
T PF07090_consen 111 RS 112 (177)
T ss_dssp TS
T ss_pred hh
Confidence 54
No 19
>PRK05569 flavodoxin; Provisional
Probab=82.02 E-value=16 Score=31.88 Aligned_cols=101 Identities=14% Similarity=0.202 Sum_probs=60.7
Q ss_pred CeEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC---CHHHHHHH
Q 013791 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI---DVASIVDF 104 (436)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l---~~~~L~~F 104 (436)
.+++++|.+.. .+.-=..+.+.|++.|.+++.....+.+. .....||.||+-+|.-. ++.. ..+.+.+.
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~----~~~~~~d~iilgsPty~--~~~~~~~~~~~~~~~ 75 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKV----EDVLEADAVAFGSPSMD--NNNIEQEEMAPFLDQ 75 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCH----HHHhhCCEEEEECCCcC--CCcCChHHHHHHHHH
Confidence 47899998752 22333456777888899988765555432 13346799999999753 1112 23444444
Q ss_pred HH----CCCcEEEEeCCCC-----cHHHHHHHHHcCceecC
Q 013791 105 VD----SGHDLIVAADSNA-----SDLIREVATECGVDFDE 136 (436)
Q Consensus 105 vd----~GGNiLi~~~~~~-----~~~lr~ll~ElGI~~~~ 136 (436)
+. +|..+.+.+..+- .+.++.++++.|+.+..
T Consensus 76 l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~ 116 (141)
T PRK05569 76 FKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIG 116 (141)
T ss_pred hhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEee
Confidence 43 3455665554321 24567788888887755
No 20
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=81.35 E-value=4.8 Score=36.52 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=35.5
Q ss_pred eCCceEEEEEEEEEeC-------CeeeecccCCeEEEEEEeCc--eEeec---cccCCCceEEEEEecCCceeeeEEEEe
Q 013791 312 INDDLEYSVEIYEWSG-------TSWEPYVSDDVQVQFYMMSP--YVLKT---LSTDQKGHYSAEFKVPDVYGVFQFKVE 379 (436)
Q Consensus 312 i~d~v~y~i~i~e~~~-------~~W~P~~~ddiQlEf~mldP--~~R~~---L~~~~~~~y~~~f~~PD~hGvf~f~v~ 379 (436)
=+.+|+-+++|+-..+ |.|+||- .|..|++..|= -..-+ |...+.-.|-.+.|+ +-=|-|+-++.
T Consensus 39 ~~sdiHLEADIhA~~~n~~Gf~~G~wvPyL--~v~y~i~~~~~~~~~~G~~mPM~A~DGpHYG~Nvkl-~g~G~Y~v~~~ 115 (151)
T PF10634_consen 39 SESDIHLEADIHATEGNPNGFGEGDWVPYL--TVSYEITKKGSGKVQEGTFMPMVASDGPHYGDNVKL-DGPGKYKVTFT 115 (151)
T ss_dssp GG-SEEEEEEEEE-TTGCCS--TTSB--S---EEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEE-S-TSSEEEEEEEE
T ss_pred hhCCeEEEEecccccCCCCcccCCcccCCc--EEEEEEEeCCCCeEEEEecceeecCcCccccccccC-CCCccEEEEEE
Confidence 4678999999998853 6999995 25555555431 11111 122334456666666 45556655555
Q ss_pred eeecc
Q 013791 380 YQRLG 384 (436)
Q Consensus 380 Y~R~G 384 (436)
..-|+
T Consensus 116 I~pP~ 120 (151)
T PF10634_consen 116 IGPPS 120 (151)
T ss_dssp EE-GG
T ss_pred EcCcc
Confidence 54443
No 21
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=81.19 E-value=20 Score=30.76 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=59.0
Q ss_pred EEEEEcCccc--ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCC-C-CCHHHHHHHHH-
Q 013791 32 VLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG-S-IDVASIVDFVD- 106 (436)
Q Consensus 32 ~LVl~d~~~~--~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~-~-l~~~~L~~Fvd- 106 (436)
++|+|.+..- +.-=..+.+.|++.|++++.....+.+.. ....||.||+..|... .+. + -..+.+.+.+.
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~----~l~~~d~iilgspty~-~g~~p~~~~~~f~~~l~~ 75 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAE----DLLSYDAVLLGCSTWG-DEDLEQDDFEPFFEELED 75 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHH----HHhcCCEEEEEcCCCC-CCCCCcchHHHHHHHhhh
Confidence 4677776421 22223466778888999987655554321 1234799999999753 111 1 23455555554
Q ss_pred ---CCCcEEEEeCCC-------CcHHHHHHHHHcCceecCC
Q 013791 107 ---SGHDLIVAADSN-------ASDLIREVATECGVDFDED 137 (436)
Q Consensus 107 ---~GGNiLi~~~~~-------~~~~lr~ll~ElGI~~~~~ 137 (436)
+|-.+.+.+..+ ....++.+++++|...-..
T Consensus 76 ~~~~gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~~v~~ 116 (140)
T TIGR01753 76 IDLGGKKVALFGSGDWGYEFCEAVDDWEERLKEAGATIIAE 116 (140)
T ss_pred CCCCCCEEEEEecCCCCchhhHHHHHHHHHHHHCCCEEecC
Confidence 344555554322 2346778888899887554
No 22
>PF13115 YtkA: YtkA-like
Probab=79.55 E-value=9.8 Score=30.37 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=43.5
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeC----c--eEeeccccCCCceEEEEEecCCceeeeEEEE
Q 013791 311 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS----P--YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKV 378 (436)
Q Consensus 311 ~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mld----P--~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v 378 (436)
+.++. + |.+. ......|....+||+|+.|-+ + ..-..+...+.|.|.++.+++. =|.|+.+|
T Consensus 18 ~~g~~-~--i~v~--~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m-~G~W~i~v 85 (86)
T PF13115_consen 18 KVGEN-T--ITVT--VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSM-AGTWQITV 85 (86)
T ss_pred cCCce-E--EEEE--ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCC-CeeEEEEE
Confidence 55555 3 4444 556667998777999999997 3 2344455567999999977765 78887766
No 23
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=79.15 E-value=20 Score=30.68 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=52.9
Q ss_pred HHHHHHHhCCceEEEecCCCCCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCC
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA 119 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~~ 119 (436)
+.++.|+++||++-...|+...+ +|.+ .+..-|.++|+-|... .++.+.+-.+.|=+-+|+-+...
T Consensus 18 ~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e-~p~~iDlavv~~~~~~------~~~~v~~~~~~g~~~v~~~~g~~ 90 (116)
T PF13380_consen 18 RVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAE-IPEPIDLAVVCVPPDK------VPEIVDEAAALGVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGG-CSST-SEEEE-S-HHH------HHHHHHHHHHHT-SEEEE-TTS-
T ss_pred HHHHHHHhCCCEEEEECCCceEECcEEeeccccC-CCCCCCEEEEEcCHHH------HHHHHHHHHHcCCCEEEEEcchH
Confidence 46778888999999877776432 2222 2344499888887654 56777777778866666655577
Q ss_pred cHHHHHHHHHcCceec
Q 013791 120 SDLIREVATECGVDFD 135 (436)
Q Consensus 120 ~~~lr~ll~ElGI~~~ 135 (436)
.+.+..++++.||.+.
T Consensus 91 ~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 91 SEELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHcCCEEE
Confidence 7899999999999988
No 24
>PRK06703 flavodoxin; Provisional
Probab=77.01 E-value=32 Score=30.42 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=60.2
Q ss_pred eEEEEEcCcc-c-ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCC-CCCHHHHHHHHHC
Q 013791 31 RVLVLVDDFA-I-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG-SIDVASIVDFVDS 107 (436)
Q Consensus 31 r~LVl~d~~~-~-~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~-~l~~~~L~~Fvd~ 107 (436)
|++|+|.+.. . +.-=..+.+.|+..|++++....++... .....||.|||.+|... .|. +-+.+.+.+.+++
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~----~~l~~~d~viigspt~~-~g~~p~~~~~f~~~l~~ 77 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDA----EELLAYDGIILGSYTWG-DGDLPYEAEDFHEDLEN 77 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCH----HHHhcCCcEEEEECCCC-CCcCcHHHHHHHHHHhc
Confidence 7899997742 1 2222346677888999988664444321 12456799999888653 221 1134555555552
Q ss_pred ----CCcEEEEeCCCC--------cHHHHHHHHHcCceecCC
Q 013791 108 ----GHDLIVAADSNA--------SDLIREVATECGVDFDED 137 (436)
Q Consensus 108 ----GGNiLi~~~~~~--------~~~lr~ll~ElGI~~~~~ 137 (436)
|-.+.+.+..+. ...+...++++|..+...
T Consensus 78 ~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (151)
T PRK06703 78 IDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQE 119 (151)
T ss_pred CCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEccc
Confidence 334445442211 234888999999988764
No 25
>PRK06756 flavodoxin; Provisional
Probab=76.74 E-value=27 Score=30.75 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=59.0
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013791 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (436)
Q Consensus 30 ~r~LVl~d~~~~--~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd- 106 (436)
.|++|+|.+..- +.-=....+.|+++|.+++.....+... ......||.+|+-+|... .+. + +..+.+|++
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~---~~~~~~~d~vi~gspt~~-~g~-~-p~~~~~fl~~ 75 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPE---ASILEQYDGIILGAYTWG-DGD-L-PDDFLDFYDA 75 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCC---HHHHhcCCeEEEEeCCCC-CCC-C-cHHHHHHHHH
Confidence 378999987522 2222345677888999988654433210 122345799888888653 111 2 233555543
Q ss_pred ------CCCcEEEEeCCC--------CcHHHHHHHHHcCceecCC
Q 013791 107 ------SGHDLIVAADSN--------ASDLIREVATECGVDFDED 137 (436)
Q Consensus 107 ------~GGNiLi~~~~~--------~~~~lr~ll~ElGI~~~~~ 137 (436)
+|-.+.+.+..+ ..+.+...+++.|+.+-..
T Consensus 76 l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~ 120 (148)
T PRK06756 76 MDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLE 120 (148)
T ss_pred HhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCC
Confidence 244555554422 1356777888889888665
No 26
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=74.49 E-value=27 Score=32.70 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=60.0
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHhC-CceEEEecCCCCCc---------------c-cccccccccCEEEEeCCCCCc
Q 013791 31 RVLVLVDDFA--IKSSHSLYFGSLTSR-GFQLEFKLADDPNI---------------G-LQRYGQYLYDALVLFCPSVER 91 (436)
Q Consensus 31 r~LVl~d~~~--~~~~~S~f~~~L~~r-Gf~v~~~~~~d~~~---------------~-L~~~ge~~yd~LII~~p~~~~ 91 (436)
|+||++.+.. .+..-..+.+.+++. |.+++.....+... . .....-..||.||+.+|..-
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~- 80 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRF- 80 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccc-
Confidence 6899998751 233334577788875 99988643322110 0 01122346799999998743
Q ss_pred CCCCCCHHHHHHHHHCC----------CcEE-EEeCCCC----c----HHHHHHHHHcCceecCC
Q 013791 92 FGGSIDVASIVDFVDSG----------HDLI-VAADSNA----S----DLIREVATECGVDFDED 137 (436)
Q Consensus 92 ~~~~l~~~~L~~Fvd~G----------GNiL-i~~~~~~----~----~~lr~ll~ElGI~~~~~ 137 (436)
+.+. ..++.|+|.= |... +.++.+. . ..++.++.+.|+.+-+.
T Consensus 81 --g~~~-~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~ 142 (197)
T TIGR01755 81 --GNMA-SQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL 142 (197)
T ss_pred --cCcc-HHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence 2233 3577777754 3333 4443221 1 45666778999998875
No 27
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=71.25 E-value=43 Score=29.05 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=59.6
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCC------cc------cccccccccCEEEEeCCCCCc--CCC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN------IG------LQRYGQYLYDALVLFCPSVER--FGG 94 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~------~~------L~~~ge~~yd~LII~~p~~~~--~~~ 94 (436)
+.|+.+|+-+......+....+-|+..|+++.+..++... +. +.......||.|||.+..... +..
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~ 80 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAP 80 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHcc
Confidence 4577777755556677888999999999999987655332 11 112122258998886542210 101
Q ss_pred C-CCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCe
Q 013791 95 S-IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAA 140 (436)
Q Consensus 95 ~-l~~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~~~~~~ 140 (436)
+ --.+-|.++.++|. .+.+...+. .+|.+.|+-..+. |.
T Consensus 81 ~~~l~~~l~~~~~~~~-~I~aic~G~-----~~La~aGll~~~~-gv 120 (142)
T cd03132 81 SGRALHFVTEAFKHGK-PIGAVGEGS-----DLLEAAGIPLEDP-GV 120 (142)
T ss_pred ChHHHHHHHHHHhcCC-eEEEcCchH-----HHHHHcCCCCCCC-cE
Confidence 0 11144556666565 443333321 4677788865543 54
No 28
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=70.19 E-value=19 Score=34.49 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=28.5
Q ss_pred CeEEEEEc-----CcccccchhHHHHHHHhCCceEEEecCCC
Q 013791 30 RRVLVLVD-----DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 30 ~r~LVl~d-----~~~~~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
+|+||++. +-.+......-++.|++.|+++++..|+.
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 58999996 33345566678899999999999977643
No 29
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=69.56 E-value=26 Score=28.54 Aligned_cols=63 Identities=14% Similarity=0.293 Sum_probs=42.4
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeC-ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 311 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS-PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 311 ~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mld-P~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
+++...+|.|+-..- -.++++.+...=| --+...++..++|+|.++|+ |.+-|.|+..|.|..
T Consensus 15 ~vg~~~~f~v~~~d~--------G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~-P~~~G~~~i~V~~~g 78 (93)
T smart00557 15 VVGEPAEFTIDTRGA--------GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYT-PTEPGDYTVTVKFGG 78 (93)
T ss_pred ecCCCEEEEEEcCCC--------CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEE-eCCCEeEEEEEEECC
Confidence 666666666665542 1355555554333 12455556667899999999 888899999998874
No 30
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=66.90 E-value=9.8 Score=32.77 Aligned_cols=20 Identities=30% Similarity=0.713 Sum_probs=16.9
Q ss_pred cccCCCceEEEEEe-cCCcee
Q 013791 353 LSTDQKGHYSAEFK-VPDVYG 372 (436)
Q Consensus 353 L~~~~~~~y~~~f~-~PD~hG 372 (436)
++..+.|+|.-.|+ .||++|
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred CCcccCEEEEEEEEcCCCcCC
Confidence 56678999999999 888776
No 31
>PRK09271 flavodoxin; Provisional
Probab=66.82 E-value=26 Score=31.58 Aligned_cols=85 Identities=11% Similarity=0.103 Sum_probs=47.3
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC-CHHHHHHHHHC
Q 013791 31 RVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI-DVASIVDFVDS 107 (436)
Q Consensus 31 r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l-~~~~L~~Fvd~ 107 (436)
|++|++.+.. .+.-=....+.|+.+|+++.....++..++=.......||.+||.+|... -|..- +...+.+.+..
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~-~G~~p~~~~~f~~~l~~ 80 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDN-AGRTPPEMKRFIAELAE 80 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccC-CCcCCHHHHHHHHHHHH
Confidence 7889997742 23333356788999999987543333322111222345799999888653 12211 24556555643
Q ss_pred ----CCcEEEEeC
Q 013791 108 ----GHDLIVAAD 116 (436)
Q Consensus 108 ----GGNiLi~~~ 116 (436)
|-.+.+.+.
T Consensus 81 ~~~~~k~~avfgs 93 (160)
T PRK09271 81 TIGKPPNVAVFGT 93 (160)
T ss_pred HhccCCeEEEEec
Confidence 334555543
No 32
>PRK07308 flavodoxin; Validated
Probab=64.73 E-value=41 Score=29.55 Aligned_cols=101 Identities=7% Similarity=0.032 Sum_probs=57.4
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCC--HHHHHHHHH
Q 013791 31 RVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSID--VASIVDFVD 106 (436)
Q Consensus 31 r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~--~~~L~~Fvd 106 (436)
++.|+|.+.. .+.-=....+.|+++|++++....++.+.. ....||.+|+.+|... . +.+. ...+.+.+.
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~----~l~~~d~vi~g~~t~g-~-G~~p~~~~~fl~~l~ 76 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDAS----DFEDADIAIVATYTYG-D-GELPDEIVDFYEDLA 76 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHh----HhccCCEEEEEeCccC-C-CCCCHHHHHHHHHHh
Confidence 6788887642 223333466788889998876544444221 1245689888777653 1 2122 344444443
Q ss_pred C---CC-cEEEEeC-C-------CCcHHHHHHHHHcCceecCC
Q 013791 107 S---GH-DLIVAAD-S-------NASDLIREVATECGVDFDED 137 (436)
Q Consensus 107 ~---GG-NiLi~~~-~-------~~~~~lr~ll~ElGI~~~~~ 137 (436)
. .| .+.+.+. . ...+.+...+.++|..+-..
T Consensus 77 ~~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~ 119 (146)
T PRK07308 77 DLDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAE 119 (146)
T ss_pred cCCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccC
Confidence 2 23 3334433 1 11356778889999988654
No 33
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=64.73 E-value=30 Score=26.74 Aligned_cols=55 Identities=16% Similarity=0.060 Sum_probs=35.5
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCC
Q 013791 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPS 88 (436)
Q Consensus 33 LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~ 88 (436)
.+++.+......+....+.|+..|++++....+...... ......||.|||-...
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lii~g~~ 56 (115)
T cd01653 2 AVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVES-DVDLDDYDGLILPGGP 56 (115)
T ss_pred EEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceec-cCChhccCEEEECCCC
Confidence 344444444556778899999999999987665542211 2345677998776543
No 34
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=64.26 E-value=33 Score=25.12 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=44.4
Q ss_pred EEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCC---CCCHHHHHHHHHCCCc
Q 013791 34 VLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG---SIDVASIVDFVDSGHD 110 (436)
Q Consensus 34 Vl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~---~l~~~~L~~Fvd~GGN 110 (436)
++.++......+..+.+.++..|+++....+.+..... ......||.||+.......... .-..+.+.++..+|+-
T Consensus 3 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (92)
T cd03128 3 VLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVES-DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKP 81 (92)
T ss_pred EEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcccc-cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCE
Confidence 44444444445667888899999999887665542211 2334567898887664432211 0112556666666544
Q ss_pred EE
Q 013791 111 LI 112 (436)
Q Consensus 111 iL 112 (436)
++
T Consensus 82 i~ 83 (92)
T cd03128 82 VL 83 (92)
T ss_pred EE
Confidence 44
No 35
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=62.01 E-value=12 Score=34.51 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=44.6
Q ss_pred eEEEEEcCc--ccccchhHHHHHHHhCCceEEEecCCCC-CcccccccccccCEEEEeCCCCC-cCCCCCCHHHHHHHHH
Q 013791 31 RVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDP-NIGLQRYGQYLYDALVLFCPSVE-RFGGSIDVASIVDFVD 106 (436)
Q Consensus 31 r~LVl~d~~--~~~~~~S~f~~~L~~rGf~v~~~~~~d~-~~~L~~~ge~~yd~LII~~p~~~-~~~~~l~~~~L~~Fvd 106 (436)
|+|++|-.+ +.+.--+.....|+++|++++....... .++| ..||.+||.+|-.- ++ .+.+.+||.
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l-----~~ydavVIgAsI~~~h~-----~~~~~~Fv~ 71 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPAL-----EDYDAVVIGASIRYGHF-----HEAVQSFVK 71 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccCh-----hhCceEEEecchhhhhh-----HHHHHHHHH
Confidence 789999553 3455667788999999999998733221 1233 34599999988653 22 355666665
Q ss_pred C
Q 013791 107 S 107 (436)
Q Consensus 107 ~ 107 (436)
+
T Consensus 72 k 72 (175)
T COG4635 72 K 72 (175)
T ss_pred H
Confidence 4
No 36
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=60.47 E-value=75 Score=29.64 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=60.6
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHh-CCceEEEecCCCCCcc-c---------------ccccccccCEEEEeCCCCCc
Q 013791 31 RVLVLVDDFA--IKSSHSLYFGSLTS-RGFQLEFKLADDPNIG-L---------------QRYGQYLYDALVLFCPSVER 91 (436)
Q Consensus 31 r~LVl~d~~~--~~~~~S~f~~~L~~-rGf~v~~~~~~d~~~~-L---------------~~~ge~~yd~LII~~p~~~~ 91 (436)
|+|||+.+.. .+..-..+.+.+++ .|.+++.....+.... + ....-..||.||+-+|..-
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~- 81 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRF- 81 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccC-
Confidence 7899997752 23334457778887 8999886533221100 0 0223346799999998753
Q ss_pred CCCCCCHHHHHHHHHCC----------CcEE-EEeCC-----CC---cHHHHHHHHHcCceecCC
Q 013791 92 FGGSIDVASIVDFVDSG----------HDLI-VAADS-----NA---SDLIREVATECGVDFDED 137 (436)
Q Consensus 92 ~~~~l~~~~L~~Fvd~G----------GNiL-i~~~~-----~~---~~~lr~ll~ElGI~~~~~ 137 (436)
+. -...++.|+|.- |... +.+.. +. ...++.++.++|+.+-+.
T Consensus 82 -g~--~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~ 143 (200)
T PRK03767 82 -GN--MAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGL 143 (200)
T ss_pred -CC--chHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCC
Confidence 22 335677777764 3332 33332 12 245666668999998775
No 37
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=60.31 E-value=46 Score=29.07 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=66.2
Q ss_pred eEEEEEcCccc----ccchhHHHHHHHhCCceEEEecCCCCCcccc-----------------cccccccCEEEEeCCCC
Q 013791 31 RVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQ-----------------RYGQYLYDALVLFCPSV 89 (436)
Q Consensus 31 r~LVl~d~~~~----~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~-----------------~~ge~~yd~LII~~p~~ 89 (436)
|+|++.-+... ...-..+.+.|+++|++++...+.|-.+... ...-...|.+|+.+|..
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y 81 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY 81 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE
Confidence 67777755432 2333457778888899999876665322221 12234569999999965
Q ss_pred CcCCCCCCH--HHHHHHHH-------CCCcEEEE-eCCC------CcHHHHHHHHHcCceecCCCCeEEEe
Q 013791 90 ERFGGSIDV--ASIVDFVD-------SGHDLIVA-ADSN------ASDLIREVATECGVDFDEDPAAMVID 144 (436)
Q Consensus 90 ~~~~~~l~~--~~L~~Fvd-------~GGNiLi~-~~~~------~~~~lr~ll~ElGI~~~~~~~~~VvD 144 (436)
. +.++. +.+.|.+. +|.-+.++ .+.+ ....++.++..+|+...|. +...++
T Consensus 82 ~---~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 148 (152)
T PF03358_consen 82 N---GSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRGGLRALEQLRQILDYLGMIVVPS-GVFAVS 148 (152)
T ss_dssp T---TBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSSTTHHHHHHHHHHHHHTTBEEECC-SEEEET
T ss_pred c---CcCChhhhHHHHHhccccccccCCCEEEEEEEecCCcHHHHHHHHHHHHHHHCCCEEcCC-cEEEEe
Confidence 5 22333 66666664 23333332 2221 1478899999999999996 555544
No 38
>PRK07053 glutamine amidotransferase; Provisional
Probab=54.04 E-value=85 Score=30.32 Aligned_cols=98 Identities=10% Similarity=0.159 Sum_probs=58.8
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCC----C--CHHHHHH
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS----I--DVASIVD 103 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~----l--~~~~L~~ 103 (436)
+|+||+--.. .+....+.+.|+.+|+++++..+.+..... -....||.|||........... + ..+.|.+
T Consensus 3 ~~ilviqh~~--~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~--~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~ 78 (234)
T PRK07053 3 KTAVAIRHVA--FEDLGSFEQVLGARGYRVRYVDVGVDDLET--LDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQ 78 (234)
T ss_pred ceEEEEECCC--CCCChHHHHHHHHCCCeEEEEecCCCccCC--CCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHH
Confidence 4677775432 345567999999999999987554432211 1223579999987543322111 1 1255666
Q ss_pred HHHCCCcEE-EEeCCCCcHHHHHHHHHcCceecCC
Q 013791 104 FVDSGHDLI-VAADSNASDLIREVATECGVDFDED 137 (436)
Q Consensus 104 Fvd~GGNiL-i~~~~~~~~~lr~ll~ElGI~~~~~ 137 (436)
+++.|.-+| |-. ...-++..+|-.+.+.
T Consensus 79 ~~~~~~PvlGIC~------G~Qlla~alGg~V~~~ 107 (234)
T PRK07053 79 RLAAGLPTLGICL------GAQLIARALGARVYPG 107 (234)
T ss_pred HHHCCCCEEEECc------cHHHHHHHcCCcEecC
Confidence 777887777 332 3456777777666553
No 39
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=52.55 E-value=51 Score=29.24 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=54.7
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCC-CCCc-------cc------ccccccccCEEEEeCCCC-CcCCCC
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNI-------GL------QRYGQYLYDALVLFCPSV-ERFGGS 95 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~-d~~~-------~L------~~~ge~~yd~LII~~p~~-~~~~~~ 95 (436)
|++|++-+.-.........+.|+..||++++..++ .... .+ .......||.|+|-.... +.+..+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~ 80 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRD 80 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccC
Confidence 56777766666777788888999999999998777 4322 11 111123589888866432 212111
Q ss_pred CC-HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 96 ID-VASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 96 l~-~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
-. .+-|.++.++|..|. +...+. .+|.+.|+
T Consensus 81 ~~~~~~l~~~~~~~~~i~-~ic~G~-----~~La~agl 112 (165)
T cd03134 81 PDAVAFVRAFAEAGKPVA-AICHGP-----WVLISAGV 112 (165)
T ss_pred HHHHHHHHHHHHcCCeEE-EEchHH-----HHHHhcCc
Confidence 11 134556666666544 332221 34556665
No 40
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=52.32 E-value=34 Score=33.46 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=37.5
Q ss_pred EecCCcEEEEEecccccccccccccccccCCCccccccccHHHHHHHhhcccCcCceeEeeee
Q 013791 234 QARNNARILITGSLSMFSNRFFRSGVQKAGSSIKHEKSGNEQFLTEISKWVFHERGHLKAVNV 296 (436)
Q Consensus 234 Q~~nnaRivv~GS~d~fSn~~~~~~v~~~~~~~~~~~~~N~~f~~~l~~W~F~e~gvLr~~~~ 296 (436)
.++-+=-|++-|+.+||.=--+ ..+ .++..++-|..=+..++.|...++|.=-+.++
T Consensus 205 r~r~~L~iv~~gd~~L~N~Ysv-i~v-----NP~r~~~vny~~A~kfi~w~~s~~gq~~Ia~f 261 (280)
T COG2998 205 RNRPTLVIVLEGDPSLFNPYSV-IAV-----NPKRVKGVNYTAATKFIEWLMSEKGQNLIAEF 261 (280)
T ss_pred cCccceEEEecCCccccCceeE-EEE-----chhcCCCcCchHHHHHHHHHhhHHHHHHHhhc
Confidence 3455566788898888864321 112 12235677888899999999999987444433
No 41
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=52.09 E-value=45 Score=27.76 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=22.7
Q ss_pred HHHHHHHHC---CCcEEEEeCCCCcHHHHHHHHHcCce
Q 013791 99 ASIVDFVDS---GHDLIVAADSNASDLIREVATECGVD 133 (436)
Q Consensus 99 ~~L~~Fvd~---GGNiLi~~~~~~~~~lr~ll~ElGI~ 133 (436)
..+.+|+.+ ++.++++++ +.+++.++++|++
T Consensus 68 ~~~~~~l~~~~~~~~v~vlG~----~~l~~~l~~~G~e 101 (101)
T PF13344_consen 68 MAAAEYLKEHKGGKKVYVLGS----DGLREELREAGFE 101 (101)
T ss_dssp HHHHHHHHHHTTSSEEEEES-----HHHHHHHHHTTEE
T ss_pred HHHHHHHHhcCCCCEEEEEcC----HHHHHHHHHcCCC
Confidence 455566654 778888764 4799999999985
No 42
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=51.99 E-value=55 Score=30.32 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=50.1
Q ss_pred EEEEcCcccccchh-HHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcE
Q 013791 33 LVLVDDFAIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDL 111 (436)
Q Consensus 33 LVl~d~~~~~~~~S-~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNi 111 (436)
+.++|+. ++|+ .+.+.|+++|+++.....++.+ +.......+|.|||.+...+--....+.+.|.++ +++--|
T Consensus 2 il~id~~---dsft~~~~~~l~~~g~~v~v~~~~~~~--~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~-~~~~Pv 75 (188)
T TIGR00566 2 VLMIDNY---DSFTYNLVQYFCELGAEVVVKRNDSLT--LQEIEALLPLLIVISPGPCTPNEAGISLEAIRHF-AGKLPI 75 (188)
T ss_pred EEEEECC---cCHHHHHHHHHHHcCCceEEEECCCCC--HHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHh-ccCCCE
Confidence 4566764 3333 3777888899999876545443 3333334568988865543311111233444444 544444
Q ss_pred E-EEeCCCCcHHHHHHHHHcCceecC
Q 013791 112 I-VAADSNASDLIREVATECGVDFDE 136 (436)
Q Consensus 112 L-i~~~~~~~~~lr~ll~ElGI~~~~ 136 (436)
| |- -+..-++..+|=++.+
T Consensus 76 LGIC------~G~Qll~~~~GG~v~~ 95 (188)
T TIGR00566 76 LGVC------LGHQAMGQAFGGDVVR 95 (188)
T ss_pred EEEC------HHHHHHHHHcCCEEee
Confidence 4 22 3456677777754443
No 43
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=51.88 E-value=89 Score=28.61 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=64.7
Q ss_pred EcCccc-ccchh---HHHHHHHhCCceEEEecCCCCCccc-ccccccccCEEEEeCCCCCcCCC--C----CCHHHHHHH
Q 013791 36 VDDFAI-KSSHS---LYFGSLTSRGFQLEFKLADDPNIGL-QRYGQYLYDALVLFCPSVERFGG--S----IDVASIVDF 104 (436)
Q Consensus 36 ~d~~~~-~~~~S---~f~~~L~~rGf~v~~~~~~d~~~~L-~~~ge~~yd~LII~~p~~~~~~~--~----l~~~~L~~F 104 (436)
+|...+ ...|. .-.+.|++.|-.|-+- .|-.++.- .......||.+|..=|-.-.... . ...+.|.+|
T Consensus 29 ~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~F 107 (166)
T PF10354_consen 29 YDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGF 107 (166)
T ss_pred cCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHH
Confidence 366533 45666 7788899999888653 23222221 12245568998888885531111 0 122567777
Q ss_pred HHC-------CCcEEEEeCCCCc---HHHHHHHHHcCceecCC
Q 013791 105 VDS-------GHDLIVAADSNAS---DLIREVATECGVDFDED 137 (436)
Q Consensus 105 vd~-------GGNiLi~~~~~~~---~~lr~ll~ElGI~~~~~ 137 (436)
+.+ +|.|.|+.-.+.+ =+|..++++.|+.+...
T Consensus 108 f~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 108 FKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred HHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEE
Confidence 776 9999999865544 37889999999888764
No 44
>PRK06490 glutamine amidotransferase; Provisional
Probab=51.66 E-value=75 Score=30.83 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCC--CC--HHHHH
Q 013791 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS--ID--VASIV 102 (436)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~--l~--~~~L~ 102 (436)
+...|+|||.+... +....+-+.|+++|+++++..+.+... + ......||.+||.+....-.-.. +. .+.|.
T Consensus 5 ~~~~~vlvi~h~~~--~~~g~l~~~l~~~g~~~~v~~~~~~~~-~-p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~ 80 (239)
T PRK06490 5 RDKRPVLIVLHQER--STPGRVGQLLQERGYPLDIRRPRLGDP-L-PDTLEDHAGAVIFGGPMSANDPDDFIRREIDWIS 80 (239)
T ss_pred CCCceEEEEecCCC--CCChHHHHHHHHCCCceEEEeccCCCC-C-CCcccccCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 45679999987653 445568888999999999865543211 1 11233579999987654311110 11 24455
Q ss_pred HHHHCCCcEE-EEeCCCCcHHHHHHHHHcCceecC
Q 013791 103 DFVDSGHDLI-VAADSNASDLIREVATECGVDFDE 136 (436)
Q Consensus 103 ~Fvd~GGNiL-i~~~~~~~~~lr~ll~ElGI~~~~ 136 (436)
+.++.|--+| |- -...-++..+|=.+.+
T Consensus 81 ~~~~~~~PvLGIC------~G~Qlla~alGG~V~~ 109 (239)
T PRK06490 81 VPLKENKPFLGIC------LGAQMLARHLGARVAP 109 (239)
T ss_pred HHHHCCCCEEEEC------HhHHHHHHHcCCEeec
Confidence 5667777766 33 2455666777755443
No 45
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=51.42 E-value=28 Score=32.70 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=31.7
Q ss_pred eeecccCCeEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEEEEe
Q 013791 330 WEPYVSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVE 379 (436)
Q Consensus 330 W~P~~~ddiQlEf~mldP~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~ 379 (436)
++|+...+.. ||+..|+ .++-.|.++|.+|++-||..+.+-
T Consensus 41 YvP~~~~~~~-eF~L~d~--------~~~~iy~~~~~l~~~~GIv~i~LP 81 (189)
T PF06051_consen 41 YVPYTSAETV-EFVLQDE--------QGNPIYQTTFPLPQQPGIVSITLP 81 (189)
T ss_pred EecCCCCcce-EEEEecC--------CCCEEeEEEEecCCCCCEEEEECC
Confidence 5677755444 9996664 245689999999999999999887
No 46
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=50.33 E-value=1.5e+02 Score=32.88 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=39.4
Q ss_pred CcCCCCCCHHHHHHHHHCCCcEEEEeCCCCcH-HHHHHHHHcCceecCCCCeEEEeccCcc
Q 013791 90 ERFGGSIDVASIVDFVDSGHDLIVAADSNASD-LIREVATECGVDFDEDPAAMVIDHINYA 149 (436)
Q Consensus 90 ~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~~~~-~lr~ll~ElGI~~~~~~~~~VvDhf~~~ 149 (436)
+.. .++...+.+..+.|.+++|+.|.+++. ..-..++++||++ +|+||+...
T Consensus 111 eGY--Gl~~~~i~~~~~~~~~LiItvD~Gi~~~e~i~~a~~~gidv------IVtDHH~~~ 163 (575)
T PRK11070 111 DGY--GLSPEVVDQAHARGAQLIVTVDNGISSHAGVAHAHALGIPV------LVTDHHLPG 163 (575)
T ss_pred CCC--CCCHHHHHHHHhcCCCEEEEEcCCcCCHHHHHHHHHCCCCE------EEECCCCCC
Confidence 444 379999999999999999999988752 2336789999854 677877543
No 47
>PRK06934 flavodoxin; Provisional
Probab=47.44 E-value=1.2e+02 Score=29.28 Aligned_cols=54 Identities=24% Similarity=0.169 Sum_probs=32.4
Q ss_pred ccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH----CCCcEEEEe---CCCCcHHHHHHHHHcC
Q 013791 74 YGQYLYDALVLFCPSVERFGGSIDVASIVDFVD----SGHDLIVAA---DSNASDLIREVATECG 131 (436)
Q Consensus 74 ~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd----~GGNiLi~~---~~~~~~~lr~ll~ElG 131 (436)
.+...||.|+|--|-=- + --+..+..|++ .|.+|.... +++....++.+.+.|+
T Consensus 125 ~dl~~YD~I~IG~PIWw--g--~~P~~V~tFLe~~d~~GK~I~pF~T~ggsg~g~s~~~i~~l~~ 185 (221)
T PRK06934 125 QNLADYDQIFIGYPIWW--Y--KMPMVMYSFFEQHDFSGKTLIPFTTHGGSRFSDSLREIKRLQP 185 (221)
T ss_pred HhHHhCCEEEEEcchhh--c--cccHHHHHHHHhcCCCCCEEEEEEecCCCCccchHHHHHHHcC
Confidence 34556788888777432 1 24466777776 466666433 2344566777777664
No 48
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=47.27 E-value=20 Score=32.59 Aligned_cols=55 Identities=15% Similarity=0.340 Sum_probs=31.9
Q ss_pred ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCCc-HHHHHHHHHcC
Q 013791 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNAS-DLIREVATECG 131 (436)
Q Consensus 76 e~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~~~-~~lr~ll~ElG 131 (436)
...+|.+|++=||.|... ..=...|..-+..||.|+|.++...+ +++..+++++|
T Consensus 67 ~~~~D~vvly~PKaK~e~-~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 67 DQDFDTVVLYWPKAKAEA-QYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG 122 (155)
T ss_dssp HTT-SEEEEE--SSHHHH-HHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS
T ss_pred ccCCCEEEEEccCcHHHH-HHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC
Confidence 346799999999998330 01114444555679999999986542 45666666664
No 49
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=46.90 E-value=75 Score=30.69 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=42.1
Q ss_pred cchhHHHHHHHhCCceEEEecCCCC----------------------------------CcccccccccccCEEEEeCCC
Q 013791 43 SSHSLYFGSLTSRGFQLEFKLADDP----------------------------------NIGLQRYGQYLYDALVLFCPS 88 (436)
Q Consensus 43 ~~~S~f~~~L~~rGf~v~~~~~~d~----------------------------------~~~L~~~ge~~yd~LII~~p~ 88 (436)
.....-++-|++.||+|++.+|+.. +..+.+-....||.|+|-...
T Consensus 25 ~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~ 104 (231)
T cd03147 25 SEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGH 104 (231)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCC
Confidence 4556678889999999999877532 012222234578998886542
Q ss_pred C--CcCCCCCCH-HHHHHHHHCCCcEE
Q 013791 89 V--ERFGGSIDV-ASIVDFVDSGHDLI 112 (436)
Q Consensus 89 ~--~~~~~~l~~-~~L~~Fvd~GGNiL 112 (436)
. ..|..+-.. +.|.+|.++|+ ++
T Consensus 105 g~~~dl~~~~~l~~ll~~f~~~gK-~i 130 (231)
T cd03147 105 GTLFDFPHATNLQKIAQQIYANGG-VV 130 (231)
T ss_pred chhhhcccCHHHHHHHHHHHHcCC-EE
Confidence 2 234332223 56777777766 44
No 50
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=46.68 E-value=73 Score=29.42 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=53.6
Q ss_pred EEEEcCcccccchh-HHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcE
Q 013791 33 LVLVDDFAIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDL 111 (436)
Q Consensus 33 LVl~d~~~~~~~~S-~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNi 111 (436)
+.|+|+. ++|+ .+.+.|+.+|++++....+..+ +.......+|.|||.+....---... ...+.+.++.+.-|
T Consensus 2 il~id~~---dsf~~nl~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~~iilsgGP~~~~~~~~-~~~~i~~~~~~~Pi 75 (191)
T PRK06774 2 LLLIDNY---DSFTYNLYQYFCELGTEVMVKRNDELQ--LTDIEQLAPSHLVISPGPCTPNEAGI-SLAVIRHFADKLPI 75 (191)
T ss_pred EEEEECC---CchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHhcCCCeEEEcCCCCChHhCCC-chHHHHHhcCCCCE
Confidence 4567775 3333 3778889999999876544332 33333346799888866543111112 23444556666555
Q ss_pred E-EEeCCCCcHHHHHHHHHcCceecC
Q 013791 112 I-VAADSNASDLIREVATECGVDFDE 136 (436)
Q Consensus 112 L-i~~~~~~~~~lr~ll~ElGI~~~~ 136 (436)
| |- -+.+.++..+|=.+.+
T Consensus 76 LGIC------~G~Qlla~~~GG~v~~ 95 (191)
T PRK06774 76 LGVC------LGHQALGQAFGARVVR 95 (191)
T ss_pred EEEC------HHHHHHHHHhCCEEEe
Confidence 5 32 3566777778865555
No 51
>PRK06242 flavodoxin; Provisional
Probab=46.47 E-value=1.5e+02 Score=25.77 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=35.6
Q ss_pred ccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-----CCCcEEEEeCCC-----CcHHHHHHHHHcCceecCC
Q 013791 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVD-----SGHDLIVAADSN-----ASDLIREVATECGVDFDED 137 (436)
Q Consensus 76 e~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd-----~GGNiLi~~~~~-----~~~~lr~ll~ElGI~~~~~ 137 (436)
...||.||+.+|.-. +.+. ..+.+|++ +|..+.+.+..+ ..+.++.++++.|..+...
T Consensus 41 ~~~~d~ii~g~pvy~---~~~~-~~~~~fl~~~~~~~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 41 LSEYDLIGFGSGIYF---GKFH-KSLLKLIEKLPPVSGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEIVGE 108 (150)
T ss_pred HhHCCEEEEeCchhc---CCcC-HHHHHHHHhhhhhcCCeEEEEECCCCCcchHHHHHHHHHHHCCCEEEEE
Confidence 346699999998543 2232 34555654 355666554321 2367778888888887653
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=46.18 E-value=1.4e+02 Score=27.03 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=25.5
Q ss_pred HHHHHHHHCCCcEEEEeCCCC-cHHHHHHHHHcCceec
Q 013791 99 ASIVDFVDSGHDLIVAADSNA-SDLIREVATECGVDFD 135 (436)
Q Consensus 99 ~~L~~Fvd~GGNiLi~~~~~~-~~~lr~ll~ElGI~~~ 135 (436)
+.+.+.+..||.+.+...... ...+..++++.|.+..
T Consensus 124 ~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 124 DELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred HhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 444567778998876655443 5677888899886544
No 53
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=46.01 E-value=79 Score=29.58 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=52.4
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEE
Q 013791 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (436)
Q Consensus 33 LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiL 112 (436)
++++|+. +..+| .+.+.|+++|+++.....+..+ +.......+|.|||.+....-.-.....+.+..+ +++--+|
T Consensus 2 il~idn~-dsft~-nl~~~l~~~g~~v~v~~~~~~~--~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~-~~~~PvL 76 (195)
T PRK07649 2 ILMIDNY-DSFTF-NLVQFLGELGQELVVKRNDEVT--ISDIENMKPDFLMISPGPCSPNEAGISMEVIRYF-AGKIPIF 76 (195)
T ss_pred EEEEeCC-CccHH-HHHHHHHHCCCcEEEEeCCCCC--HHHHhhCCCCEEEECCCCCChHhCCCchHHHHHh-cCCCCEE
Confidence 4667875 22333 3788999999999887544332 2222334579888876544311111233444443 3343444
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecCC
Q 013791 113 -VAADSNASDLIREVATECGVDFDED 137 (436)
Q Consensus 113 -i~~~~~~~~~lr~ll~ElGI~~~~~ 137 (436)
|- =+...++..+|-.+.+.
T Consensus 77 GIC------lG~Qlla~~lGg~V~~~ 96 (195)
T PRK07649 77 GVC------LGHQSIAQVFGGEVVRA 96 (195)
T ss_pred EEc------HHHHHHHHHcCCEEeeC
Confidence 22 35667777788777653
No 54
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=45.55 E-value=35 Score=30.29 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=24.9
Q ss_pred EEeCceEeeccccCCCceEEE--EEecCCceeeeEEEEeee
Q 013791 343 YMMSPYVLKTLSTDQKGHYSA--EFKVPDVYGVFQFKVEYQ 381 (436)
Q Consensus 343 ~mldP~~R~~L~~~~~~~y~~--~f~~PD~hGvf~f~v~Y~ 381 (436)
.|.|||++..|.+.+..+.+| ..+-.|--|+|+.+.-|.
T Consensus 23 ~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~ 63 (133)
T cd08374 23 KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP 63 (133)
T ss_pred cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe
Confidence 499999999998743222222 445555557777665554
No 55
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=45.05 E-value=59 Score=30.95 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=30.6
Q ss_pred ccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeC----CCCcHHHHHHHHHc
Q 013791 78 LYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAAD----SNASDLIREVATEC 130 (436)
Q Consensus 78 ~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~----~~~~~~lr~ll~El 130 (436)
.|-.|.+-....-.| .+-+.+.|.+|+++||=|++=.. ......+|.+++++
T Consensus 53 ~yP~ly~~g~~~~~~-s~~e~~~Lr~Yl~~GGfl~~D~~~~~~~~~~~~~r~~~~~v 108 (207)
T PF13709_consen 53 FYPFLYWPGHGDFPL-SDEEIANLRRYLENGGFLLFDDRDCGSAGFDASFRRLMKRV 108 (207)
T ss_pred hCCEEEEeCCCCCCC-CHHHHHHHHHHHHcCCEEEEECCCcccccccHHHHHHHHHh
Confidence 445555544433333 22455899999999997775443 23345666666553
No 56
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=44.64 E-value=1.9e+02 Score=31.04 Aligned_cols=105 Identities=6% Similarity=0.092 Sum_probs=63.7
Q ss_pred CCCeEEEEEcCc--ccccchhHHHHHHHhC--CceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHH
Q 013791 28 TDRRVLVLVDDF--AIKSSHSLYFGSLTSR--GFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (436)
Q Consensus 28 ~~~r~LVl~d~~--~~~~~~S~f~~~L~~r--Gf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~ 103 (436)
..+|++|+|++. +.+..=....+.|++. |.+++....++.+.+-.......||.+|+-+|+.. +...+ .+.+
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~~---~~~~p-~~~~ 325 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTMN---NVMMP-KIAG 325 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCccC---CcchH-HHHH
Confidence 468999999875 2334444577788877 56766554444433322223345799999888753 22333 3555
Q ss_pred HHHC------CCcEE-EEeCCC----CcHHHHHHHHHcCceecC
Q 013791 104 FVDS------GHDLI-VAADSN----ASDLIREVATECGVDFDE 136 (436)
Q Consensus 104 Fvd~------GGNiL-i~~~~~----~~~~lr~ll~ElGI~~~~ 136 (436)
|++. .|... +.++-+ ..+.+.+.++++|+.+.+
T Consensus 326 fl~~l~~~~l~gK~~~vFGSygw~g~a~~~~~~~l~~~g~~~~~ 369 (479)
T PRK05452 326 LLEEITGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSL 369 (479)
T ss_pred HHHHhhccCcCCCEEEEEECCCcCcHHHHHHHHHHHHCCCEEec
Confidence 5443 34444 444422 246788888899999965
No 57
>PLN02931 nucleoside diphosphate kinase family protein
Probab=44.42 E-value=49 Score=30.88 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=57.0
Q ss_pred HHHHhhhhccccc---cCCCCCCeEEEEEcCcccccc-hhHHHHHHHhCCceEEEecCCCCCccccccc-cccc-CEEEE
Q 013791 11 ATSLIPLFSVAFS---PENPTDRRVLVLVDDFAIKSS-HSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLY-DALVL 84 (436)
Q Consensus 11 ~~~~~~~~~~~~~---~~~~~~~r~LVl~d~~~~~~~-~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~g-e~~y-d~LII 84 (436)
++||++.+.|--. .......|||+++-..+.+.. -....+.++++||+|.-. + ...|.+.. +..| +|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~--K--~~~Lt~e~a~~fY~~h--- 80 (177)
T PLN02931 8 PLFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKE--M--TTQLDEDRASLFYAEH--- 80 (177)
T ss_pred HHHHHHHcccccccCCCCCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEee--e--eecCCHHHHHHHHHHh---
Confidence 4456666654333 333346799999977766433 367899999999999853 1 11222111 1222 22
Q ss_pred eCCCCCcCCCCCCHHHHHHHHHCCCcEE-EEeCCCCcHHHHHHH
Q 013791 85 FCPSVERFGGSIDVASIVDFVDSGHDLI-VAADSNASDLIREVA 127 (436)
Q Consensus 85 ~~p~~~~~~~~l~~~~L~~Fvd~GGNiL-i~~~~~~~~~lr~ll 127 (436)
+.+ ---+.|++|+-.|--+. ++.+.+.-+.+|.++
T Consensus 81 ---~gk-----~ff~~Lv~~mtSGP~vam~L~g~naV~~~R~li 116 (177)
T PLN02931 81 ---SSR-----SFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLI 116 (177)
T ss_pred ---CCC-----ccHHHHHHHHHhCCeEEEEEecCCHHHHHHHHh
Confidence 111 12467999998765433 333443334556655
No 58
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=44.39 E-value=2.1e+02 Score=24.80 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=49.4
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHhCCceEEE-ecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013791 31 RVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEF-KLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (436)
Q Consensus 31 r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~-~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd- 106 (436)
|+||+|.+.. .+.-=....+.|+.+|++++. ....+ +.-.......||.+||.+|..- .|. -+..+.+|++
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~d~iilgs~t~~-~g~--~p~~~~~fl~~ 76 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGT--LADAPLDPENYDLVFLGTWTWE-RGR--TPDEMKDFIAE 76 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccc--cccCcCChhhCCEEEEEcCeeC-CCc--CCHHHHHHHHH
Confidence 7899997742 122233456778888998862 21111 0000112235799988888642 221 2334444554
Q ss_pred ---CCCcEEEEeCC--CCc-----HHHHHHHHHcC
Q 013791 107 ---SGHDLIVAADS--NAS-----DLIREVATECG 131 (436)
Q Consensus 107 ---~GGNiLi~~~~--~~~-----~~lr~ll~ElG 131 (436)
+|-++.+.+.. .-. ..++.+-+.|.
T Consensus 77 l~~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 77 LGYKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred hcccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 35555555432 221 35666666653
No 59
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=43.99 E-value=2.1e+02 Score=25.28 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=45.4
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCC------cccc------cccccccCEEEEeCCCC-CcCCCC-C
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN------IGLQ------RYGQYLYDALVLFCPSV-ERFGGS-I 96 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~------~~L~------~~ge~~yd~LII~~p~~-~~~~~~-l 96 (436)
|+.+++-+.-....+....+-|+..||++....++... ..+. .-....||.|+|..... +.+..+ -
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~ 80 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNK 80 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHH
Confidence 45666655445566777888899999999886554321 1121 11223589988866422 111111 1
Q ss_pred CHHHHHHHHHCCCcEEEEe
Q 013791 97 DVASIVDFVDSGHDLIVAA 115 (436)
Q Consensus 97 ~~~~L~~Fvd~GGNiLi~~ 115 (436)
-.+.|+++.++|. .+.+.
T Consensus 81 l~~~l~~~~~~~~-~i~~i 98 (166)
T TIGR01382 81 AVRLVREFVEKGK-PVAAI 98 (166)
T ss_pred HHHHHHHHHHcCC-EEEEE
Confidence 1255566665555 44333
No 60
>PLN02335 anthranilate synthase
Probab=43.48 E-value=47 Score=31.82 Aligned_cols=61 Identities=7% Similarity=0.077 Sum_probs=36.6
Q ss_pred CCCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCC
Q 013791 25 ENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV 89 (436)
Q Consensus 25 ~~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~ 89 (436)
.|++..+.++|+|+. +..+| .+.+.|+++|.++....+++. .+.+.....+|.|||.+...
T Consensus 13 ~~~~~~~~ilviD~~-dsft~-~i~~~L~~~g~~~~v~~~~~~--~~~~~~~~~~d~iVisgGPg 73 (222)
T PLN02335 13 NSSKQNGPIIVIDNY-DSFTY-NLCQYMGELGCHFEVYRNDEL--TVEELKRKNPRGVLISPGPG 73 (222)
T ss_pred cccCccCcEEEEECC-CCHHH-HHHHHHHHCCCcEEEEECCCC--CHHHHHhcCCCEEEEcCCCC
Confidence 344555556666863 22222 377788999999998755433 23323334578988876644
No 61
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=42.29 E-value=2.1e+02 Score=25.97 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=47.4
Q ss_pred HHHHHHHhCCceEEEecCCCCCccccccccccc---CEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCC
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLY---DALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSN 118 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~y---d~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~ 118 (436)
.+++.|+..||+|+...++|-..--.++|.+.- =|-.+...+ -+.+.+..+.|.+|++++=|+-=++-|+
T Consensus 41 ~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy--~vEGHVPa~aI~~ll~~~pd~~GlavPg 113 (149)
T COG3019 41 EWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGY--YVEGHVPAEAIARLLAEKPDAKGLAVPG 113 (149)
T ss_pred HHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCE--EEeccCCHHHHHHHHhCCCCcceecCCC
Confidence 599999999999999877775222234565422 255554443 2347789999999999988877333343
No 62
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=41.74 E-value=81 Score=27.02 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=45.5
Q ss_pred HHHHHHHhCCceEEEecCCCCCcc-cccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC-C-cEEEEeCCCCcHHH
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNIG-LQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG-H-DLIVAADSNASDLI 123 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~~-L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G-G-NiLi~~~~~~~~~l 123 (436)
-+...|+..||++.+..++-+.-. +..-.+...|.++|........ -..+.+.+=+.+- - ++.+..+-...+..
T Consensus 18 ~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~---~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 18 VIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHM---TLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhH---HHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 355678999999998765533212 2233344558877755433311 1224444444443 3 45544432334445
Q ss_pred HHHHHHcCce
Q 013791 124 REVATECGVD 133 (436)
Q Consensus 124 r~ll~ElGI~ 133 (436)
.+.+.++||+
T Consensus 95 ~~~~~~~G~d 104 (122)
T cd02071 95 YELLKEMGVA 104 (122)
T ss_pred HHHHHHCCCC
Confidence 5778889973
No 63
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.55 E-value=2.4e+02 Score=26.30 Aligned_cols=112 Identities=19% Similarity=0.357 Sum_probs=65.8
Q ss_pred eEeCCceEEEEEEEEEeCCeeee--c--ccCCeEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEE---EEeeee
Q 013791 310 YRINDDLEYSVEIYEWSGTSWEP--Y--VSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQF---KVEYQR 382 (436)
Q Consensus 310 Y~i~d~v~y~i~i~e~~~~~W~P--~--~~ddiQlEf~mldP~~R~~L~~~~~~~y~~~f~~PD~hGvf~f---~v~Y~R 382 (436)
|-+.+.--|.|.|.. +.|.| | ..-.....+-+|+|.-..++ ....+ |-+.|.|.| .|.|+.
T Consensus 47 yN~G~~~A~dV~l~D---~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh--------~~vv~-p~~~G~f~~~~a~VtY~~ 114 (181)
T PF05753_consen 47 YNVGSSAAYDVKLTD---DSFPPEDFELVSGSLSASWERIPPGENVSH--------SYVVR-PKKSGYFNFTPAVVTYRD 114 (181)
T ss_pred EECCCCeEEEEEEEC---CCCCccccEeccCceEEEEEEECCCCeEEE--------EEEEe-eeeeEEEEccCEEEEEEC
Confidence 555666666666654 55632 2 22456666777777654432 22333 778888887 578855
Q ss_pred c-cceeeeeeeeEeecC---CCCCcccccccCCcchhhHHHHHHHHHhhheeeee
Q 013791 383 L-GYTSLSLSKQIPVRP---YRHNEYERFLPAAYPYYGSAFSMMAGFFIFTIVHL 433 (436)
Q Consensus 383 ~-G~t~l~~~~~v~VR~---~~hdey~Rfi~~a~pyy~s~~s~~~g~~~F~~~~L 433 (436)
. |=+-+.....-+.++ ++-.+|.|-...++-.|....+|++..++|.++..
T Consensus 115 ~~~~~~~~~a~Ss~~~~~~I~~~~~~~k~f~~~~~~w~~f~~~~~~~~~~p~ll~ 169 (181)
T PF05753_consen 115 SEGAKELQVAYSSPPGEGDILAERDYDKKFSSHVMDWGAFAIMTLPVLLIPYLLW 169 (181)
T ss_pred CCCCceeEEEEecCCCcceEEeccccchhhhhhHHHHHhHHHHHHHHHHHHHHhh
Confidence 4 212222323333333 44568888777778888888788777777765443
No 64
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=40.63 E-value=1.5e+02 Score=26.80 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=27.7
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCCC
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
|++|++.+..+........+.|+..|++++...++-
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~ 36 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGK 36 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 567777665567777888889999999999876653
No 65
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=39.43 E-value=29 Score=25.43 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=24.8
Q ss_pred ecCCceeeeEEEEeeeeccceeeeeeeeEeecCC
Q 013791 366 KVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPY 399 (436)
Q Consensus 366 ~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~ 399 (436)
.||++..-++|++.||..=+..--.++.+.|+-.
T Consensus 2 ~LP~~w~~l~F~~~~rg~~l~v~i~~~~v~v~~~ 35 (54)
T PF03633_consen 2 RLPKQWSSLSFRLRYRGHWLEVEITHEKVTVTLL 35 (54)
T ss_dssp ---TT-SEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred cCCCccCEeEEEEEECCEEEEEEEECCEEEEEEc
Confidence 5899999999999999887877777777777644
No 66
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=39.23 E-value=1.2e+02 Score=26.54 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=32.2
Q ss_pred EEEEcCc-cc-ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCC
Q 013791 33 LVLVDDF-AI-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE 90 (436)
Q Consensus 33 LVl~d~~-~~-~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~ 90 (436)
||+|++. +. +.-=..+.+.|.++|..++......... ....||.+|+.+|-..
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~-----~~~~yD~vi~gspiy~ 55 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEEDEP-----DLSDYDAVIFGSPIYA 55 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhccEEEHHhhhhccc-----ccccCCEEEEEEEEEC
Confidence 5777764 22 2222346677887888887664322222 3345599999999654
No 67
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=38.14 E-value=2.6e+02 Score=29.06 Aligned_cols=106 Identities=9% Similarity=0.168 Sum_probs=63.2
Q ss_pred CCCeEEEEEcCc--ccccchhHHHHHHH--hCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHH
Q 013791 28 TDRRVLVLVDDF--AIKSSHSLYFGSLT--SRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (436)
Q Consensus 28 ~~~r~LVl~d~~--~~~~~~S~f~~~L~--~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~ 103 (436)
..+|++|+|.+. +.+.-=....+.|+ +.|.+++.....+.+.+-.......+|.||+-+|+.. . +.+ ..+..
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~GspT~~-~-~~~--~~~~~ 321 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGSSTIN-R-GIL--SSTAA 321 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEECCCcC-c-ccc--HHHHH
Confidence 468899999885 22334445667787 6788888665555433211122335799999999743 1 212 23444
Q ss_pred HHHC------CCcEE-EEeCCC----CcHHHHHHHHHcCceecCC
Q 013791 104 FVDS------GHDLI-VAADSN----ASDLIREVATECGVDFDED 137 (436)
Q Consensus 104 Fvd~------GGNiL-i~~~~~----~~~~lr~ll~ElGI~~~~~ 137 (436)
|++. .|.+. +.++-+ ..+.+...++++|+.+-.+
T Consensus 322 ~l~~l~~~~~~~K~~a~FGsygw~g~a~~~~~~~l~~~g~~~v~~ 366 (394)
T PRK11921 322 ILEEIKGLGFKNKKAAAFGSYGWSGESVKIITERLKKAGFEIVND 366 (394)
T ss_pred HHHHhhccCcCCCEEEEEecCCCccHHHHHHHHHHHHCCCEEccC
Confidence 4432 24444 444422 2466778889999998765
No 68
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=37.95 E-value=82 Score=28.97 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=39.1
Q ss_pred eEEEEEcCc-ccccchh-HHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 31 RVLVLVDDF-AIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 31 r~LVl~d~~-~~~~~~S-~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
|+||+|.+. +...... ...+.|+. |++++....++... .....||.+||-+|... |. . ...+.+|++
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~----~~l~~yD~vIlGspi~~--G~-~-~~~~~~fl~ 70 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEE----PDLSDYDRVVIGASIRY--GH-F-HSALYKFVK 70 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCc----cCHHHCCEEEEECcccc--CC-c-CHHHHHHHH
Confidence 789999874 2223333 34566777 88888664444321 12234799888888643 22 3 355666664
No 69
>PHA02909 hypothetical protein; Provisional
Probab=37.87 E-value=10 Score=28.76 Aligned_cols=23 Identities=35% Similarity=0.774 Sum_probs=17.5
Q ss_pred cchhh-HHHHHHHHHhhheeeeec
Q 013791 412 YPYYG-SAFSMMAGFFIFTIVHLY 434 (436)
Q Consensus 412 ~pyy~-s~~s~~~g~~~F~~~~L~ 434 (436)
-.||+ ..|..|++|++|+++||-
T Consensus 24 kvyytentfcimvsfilfviifls 47 (72)
T PHA02909 24 KVYYTENTFCIMVSFILFVIIFLS 47 (72)
T ss_pred EEEEeccchhHHHHHHHHHHHHHH
Confidence 34554 468889999999999873
No 70
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=37.85 E-value=2.4e+02 Score=26.25 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=61.9
Q ss_pred eEEEEEcCccc----ccchhHHHHHHHhCCceEEEecCCCCCc-----------cc--ccccccccCEEEEeCCCCCcCC
Q 013791 31 RVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNI-----------GL--QRYGQYLYDALVLFCPSVERFG 93 (436)
Q Consensus 31 r~LVl~d~~~~----~~~~S~f~~~L~~rGf~v~~~~~~d~~~-----------~L--~~~ge~~yd~LII~~p~~~~~~ 93 (436)
|+|++.-++.. ......+.+.|++.|++++.....|-.+ .+ ........|.+||..|--.
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~--- 78 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYK--- 78 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccC---
Confidence 45666544432 1223357778888899998653322111 11 1122334599999999654
Q ss_pred CCCCH--HHHHHHHHC---CCc-EEEEeCCCC------c-HHHHHHHHHcCceecCCCCeEEEe
Q 013791 94 GSIDV--ASIVDFVDS---GHD-LIVAADSNA------S-DLIREVATECGVDFDEDPAAMVID 144 (436)
Q Consensus 94 ~~l~~--~~L~~Fvd~---GGN-iLi~~~~~~------~-~~lr~ll~ElGI~~~~~~~~~VvD 144 (436)
++++. +.+.|++.. .|. +++.+..+. . ..+|+++..+|....|. +..+.+
T Consensus 79 ~s~pg~LKn~iD~l~~~~l~~K~v~iiat~G~~~~~~~~~~~lr~~l~~l~a~~~~~-~~~~~~ 141 (191)
T PRK10569 79 ASFSGALKTLLDLLPERALEHKVVLPLATGGSVAHMLAVDYALKPVLSALKAQEILH-GVFADD 141 (191)
T ss_pred CCCCHHHHHHHHhCChhhhCCCEEEEEEecCCchhHHHHHHHHHHHHHHcCCeecCc-eEEEec
Confidence 33333 555555532 233 443332222 1 57889999999998887 665655
No 71
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=37.06 E-value=1.6e+02 Score=26.93 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=29.9
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLA 64 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~ 64 (436)
.+|++|++.+.-+..++....+-|+..|+++++..+
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~ 37 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASV 37 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEc
Confidence 368999997777778888999999999999998554
No 72
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=37.03 E-value=35 Score=36.93 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=27.0
Q ss_pred CCCeEEEEEc--CcccccchhHHHHHHHhCCceEEEecCC
Q 013791 28 TDRRVLVLVD--DFAIKSSHSLYFGSLTSRGFQLEFKLAD 65 (436)
Q Consensus 28 ~~~r~LVl~d--~~~~~~~~S~f~~~L~~rGf~v~~~~~~ 65 (436)
.+.|+|++.- ..+---....+.+.|.+|||+||...|.
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4567887743 2333345567889999999999998665
No 73
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=36.78 E-value=1.2e+02 Score=28.05 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=52.0
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEE
Q 013791 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (436)
Q Consensus 33 LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiL 112 (436)
+.++|+. +..+| .+.+.|+++|.++.....++.+ +.......||.|||.+....---...+ ..+.+.++.+--+|
T Consensus 2 il~idn~-Dsft~-nl~~~l~~~g~~v~v~~~~~~~--~~~~~~~~~d~iils~GPg~p~~~~~~-~~~~~~~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNY-DSFTW-NLYQYFCELGADVLVKRNDALT--LADIDALKPQKIVISPGPCTPDEAGIS-LDVIRHYAGRLPIL 76 (187)
T ss_pred EEEEECC-CccHH-HHHHHHHHCCCcEEEEeCCCCC--HHHHHhcCCCEEEEcCCCCChHHCCcc-HHHHHHhcCCCCEE
Confidence 4566775 23333 3778899999999886554332 333233457998887654431111122 34444455443444
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecC
Q 013791 113 -VAADSNASDLIREVATECGVDFDE 136 (436)
Q Consensus 113 -i~~~~~~~~~lr~ll~ElGI~~~~ 136 (436)
|- =....++..+|=.+..
T Consensus 77 GIC------lG~Q~la~a~Gg~v~~ 95 (187)
T PRK08007 77 GVC------LGHQAMAQAFGGKVVR 95 (187)
T ss_pred EEC------HHHHHHHHHcCCEEEe
Confidence 22 3566788888866654
No 74
>PRK04155 chaperone protein HchA; Provisional
Probab=36.75 E-value=1.7e+02 Score=29.38 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=27.3
Q ss_pred CCeEEEEEcCcccc--------------cchhHHHHHHHhCCceEEEecCCC
Q 013791 29 DRRVLVLVDDFAIK--------------SSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 29 ~~r~LVl~d~~~~~--------------~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
++|+|+|+-+.... ...-.....|++.||+|++.+++.
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 57999999654221 223456888999999999987754
No 75
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=36.64 E-value=68 Score=31.02 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCccc--------------ccchhHHHHHHHhCCceEEEecCCCC
Q 013791 28 TDRRVLVLVDDFAI--------------KSSHSLYFGSLTSRGFQLEFKLADDP 67 (436)
Q Consensus 28 ~~~r~LVl~d~~~~--------------~~~~S~f~~~L~~rGf~v~~~~~~d~ 67 (436)
......++++.... ...--.|.+.|+++||+|.+...+|+
T Consensus 20 ~~~~~v~mvE~~~~~~~~~~HkqKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~ 73 (224)
T PF04244_consen 20 PADDRVLMVEVPEEFTYVPHHKQKLVLFFSAMRHFADELRAKGFRVHYIELDDP 73 (224)
T ss_dssp TTT-EEEEE--HHHHHSS---HHHHHHHHHHHHHHHHHHHHTT--EEEE-TT-T
T ss_pred CCCCEEEEEEchHHhCcCcccHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 34555666666543 13445699999999999999866654
No 76
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=35.63 E-value=85 Score=29.21 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=40.3
Q ss_pred ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCC-------CCHHHHHHHHHCCCcEE
Q 013791 42 KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS-------IDVASIVDFVDSGHDLI 112 (436)
Q Consensus 42 ~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~-------l~~~~L~~Fvd~GGNiL 112 (436)
..++..|...|+.+|.++.+..+.+. ...+|.|||-... .+... --.+.|.+++++|+-||
T Consensus 9 ~gN~~~l~~~~~~~G~~~~~~~~~~~--------~~~~d~lilpGg~--~~~~~~~~~~~~~~~~~i~~~~~~g~pvl 76 (194)
T cd01750 9 ISNFTDLDPLAREPGVDVRYVEVPEG--------LGDADLIILPGSK--DTIQDLAWLRKRGLAEAIKNYARAGGPVL 76 (194)
T ss_pred ccCHHHHHHHHhcCCceEEEEeCCCC--------CCCCCEEEECCCc--chHHHHHHHHHcCHHHHHHHHHHCCCcEE
Confidence 56778899999999999998755433 3456876663332 12111 12367899998888776
No 77
>PRK11249 katE hydroperoxidase II; Provisional
Probab=35.29 E-value=1.8e+02 Score=33.35 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=62.5
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCc------ccc---cc-c--ccccCEEEEeCCCC--Cc
Q 013791 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------GLQ---RY-G--QYLYDALVLFCPSV--ER 91 (436)
Q Consensus 26 ~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~------~L~---~~-g--e~~yd~LII~~p~~--~~ 91 (436)
+..+.|+.||+.+-.+........+.|+..|.++.+..++...+ .+. .+ + .-.||.|+|..... +.
T Consensus 594 ~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~ 673 (752)
T PRK11249 594 DIKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIAD 673 (752)
T ss_pred CccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHH
Confidence 34588999999877778888999999999999999876543211 111 11 1 22589999865321 21
Q ss_pred CCCCC-CHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc--eecCC
Q 013791 92 FGGSI-DVASIVDFVDSGHDLIVAADSNASDLIREVATECGV--DFDED 137 (436)
Q Consensus 92 ~~~~l-~~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI--~~~~~ 137 (436)
+..+- -.+-|.++.+.|. .+-+...+ ..+|.+.|+ +.+++
T Consensus 674 L~~d~~al~fL~eaykHgK-~IAAiCaG-----~~LLaaAGL~~~~~~g 716 (752)
T PRK11249 674 LADNGDARYYLLEAYKHLK-PIALAGDA-----RKLKAALKLPDQGEEG 716 (752)
T ss_pred HhhCHHHHHHHHHHHHcCC-EEEEeCcc-----HHHHHhcCCCCCCCCe
Confidence 21100 1133455554444 44333332 267778999 33653
No 78
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=34.90 E-value=70 Score=25.68 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=24.6
Q ss_pred eeecccCCeEEEEEEeCceEeeccccCCCceEEEEEecCCce-eeeEEEE
Q 013791 330 WEPYVSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVY-GVFQFKV 378 (436)
Q Consensus 330 W~P~~~ddiQlEf~mldP~~R~~L~~~~~~~y~~~f~~PD~h-Gvf~f~v 378 (436)
|-| .|+.|.|-... +.-....|+..++|.++++. |+-. |-|+|++
T Consensus 13 wAP-~A~~V~L~~~~-~~~~~~~m~~~~~G~W~~~v--~~l~~g~Y~Y~~ 58 (85)
T cd02858 13 FAP-KANEVQVRGSW-GGAGSHPMTKDEAGVWSVTT--GPLAPGIYTYSF 58 (85)
T ss_pred ECC-CCCEEEEEeec-CCCccEeCeECCCeEEEEEE--CCCCCcEEEEEE
Confidence 555 34555554332 12234557667789999877 4433 4344443
No 79
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=34.89 E-value=76 Score=26.48 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=35.5
Q ss_pred chhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013791 44 SHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (436)
Q Consensus 44 ~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G 108 (436)
+-....+.|+++||+++.. ++++ |.+||..-....-...-..+.|.++.+.+
T Consensus 15 Dse~i~~~l~~~G~~~~~~-~e~A------------D~iiiNTC~V~~~Ae~k~~~~i~~l~~~~ 66 (98)
T PF00919_consen 15 DSERIASILQAAGYEIVDD-PEEA------------DVIIINTCTVRESAEQKSRNRIRKLKKLK 66 (98)
T ss_pred HHHHHHHHHHhcCCeeecc-cccC------------CEEEEEcCCCCcHHHHHHHHHHHHHHHhc
Confidence 3456889999999998654 4666 99999988776221112226677777766
No 80
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=34.68 E-value=79 Score=29.20 Aligned_cols=50 Identities=6% Similarity=0.169 Sum_probs=32.5
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCC
Q 013791 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPS 88 (436)
Q Consensus 33 LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~ 88 (436)
+.++|+. +..+|. +.+.|+.+|.++....+++.+. . ....||.|||.+..
T Consensus 4 iliid~~-dsf~~~-i~~~l~~~g~~~~v~~~~~~~~--~--~l~~~d~iIi~gGp 53 (190)
T PRK06895 4 LLIINNH-DSFTFN-LVDLIRKLGVPMQVVNVEDLDL--D--EVENFSHILISPGP 53 (190)
T ss_pred EEEEeCC-CchHHH-HHHHHHHcCCcEEEEECCccCh--h--HhccCCEEEECCCC
Confidence 3445654 456666 8899999999999876554321 1 12347998888543
No 81
>CHL00101 trpG anthranilate synthase component 2
Probab=34.62 E-value=1.1e+02 Score=28.24 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=53.6
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEE
Q 013791 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (436)
Q Consensus 33 LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiL 112 (436)
+.++|+. +..+| .+.+.|+++|.++.....+..+ +.......+|.|||.+.... ....-....+.+.++.+--+|
T Consensus 2 iliid~~-dsft~-~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dgiiisgGpg~-~~~~~~~~~i~~~~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNY-DSFTY-NLVQSLGELNSDVLVCRNDEID--LSKIKNLNIRHIIISPGPGH-PRDSGISLDVISSYAPYIPIL 76 (190)
T ss_pred EEEEECC-CchHH-HHHHHHHhcCCCEEEEECCCCC--HHHHhhCCCCEEEECCCCCC-hHHCcchHHHHHHhcCCCcEE
Confidence 3455664 22222 2677899999999865444332 22222345799888766533 211223466777787776666
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecC
Q 013791 113 -VAADSNASDLIREVATECGVDFDE 136 (436)
Q Consensus 113 -i~~~~~~~~~lr~ll~ElGI~~~~ 136 (436)
|- -....++.-+|-++.+
T Consensus 77 GIC------lG~Qlla~~~Gg~V~~ 95 (190)
T CHL00101 77 GVC------LGHQSIGYLFGGKIIK 95 (190)
T ss_pred EEc------hhHHHHHHHhCCEEEE
Confidence 33 2455667777766655
No 82
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=34.57 E-value=1.2e+02 Score=31.93 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=61.6
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
..|+++|+.=| ..-.+|.-|-..|++-|.++++..+.+..-....--+++.+.+.|=+|+...+ .-.+...|.+-.+
T Consensus 100 ~~GD~vl~~~~--~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l-~v~DI~~i~~~A~ 176 (396)
T COG0626 100 KAGDHVLLPDD--LYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLL-EVPDIPAIARLAK 176 (396)
T ss_pred CCCCEEEecCC--ccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCccc-ccccHHHHHHHHH
Confidence 34787776555 34566666777778888999887665542222222225668888888888755 5577799999888
Q ss_pred CCCcEEEEeCCCCcH
Q 013791 107 SGHDLIVAADSNASD 121 (436)
Q Consensus 107 ~GGNiLi~~~~~~~~ 121 (436)
.-| ++++.|.+-..
T Consensus 177 ~~g-~~vvVDNTfat 190 (396)
T COG0626 177 AYG-ALVVVDNTFAT 190 (396)
T ss_pred hcC-CEEEEECCccc
Confidence 888 88888876533
No 83
>PF10611 DUF2469: Protein of unknown function (DUF2469); InterPro: IPR019592 This entry represents a group of proteins often found in Actinomycetes species, clustered with signal peptidase and/or RNAse-HII.
Probab=34.31 E-value=29 Score=28.96 Aligned_cols=44 Identities=32% Similarity=0.492 Sum_probs=35.6
Q ss_pred CceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcc-cccccCCcch
Q 013791 369 DVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEY-ERFLPAAYPY 414 (436)
Q Consensus 369 D~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey-~Rfi~~a~py 414 (436)
|+-|.|+|.|.-.|..| |-..-.+.+|.-.+|-| +=.++.||+|
T Consensus 23 DVv~lF~yvVETeRRFY--LaN~Vd~~~r~~~g~vyfEv~m~DaWVW 67 (101)
T PF10611_consen 23 DVVGLFSYVVETERRFY--LANQVDVQVRSAGGDVYFEVSMSDAWVW 67 (101)
T ss_pred HHHhheeeEEEeeeeeE--eecceEEEEecCCCcEEEEEEecceEEE
Confidence 77899999999999875 56666777888888877 4459999987
No 84
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=34.18 E-value=1.9e+02 Score=27.17 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=57.1
Q ss_pred CCeEEEEEc-CcccccchhHHHHHHHhCCceEEEecCCCCCc--cccccccccc-----CEEEEeCCCCCcCCCCCCHHH
Q 013791 29 DRRVLVLVD-DFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI--GLQRYGQYLY-----DALVLFCPSVERFGGSIDVAS 100 (436)
Q Consensus 29 ~~r~LVl~d-~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~--~L~~~ge~~y-----d~LII~~p~~~~~~~~l~~~~ 100 (436)
|+++.+|.- ++..-..++...+.++++|.+++.. |.=+++ ....-|.+.+ +.+++........ .-..+.
T Consensus 71 g~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~vevi-PGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~--~~~~~~ 147 (229)
T TIGR01465 71 GKLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVV-PGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTP--MPEGEK 147 (229)
T ss_pred CCeEEEEeCcCccccccHHHHHHHHHHCCCCEEEE-CChhHHHHHHHHcCCCccccCCccEEEEEeccCCCC--CCChHH
Confidence 555555552 2233345555667888889888764 332222 2335555543 3444432221111 013356
Q ss_pred HHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce
Q 013791 101 IVDFVDSGHDLIVAADSNASDLIREVATECGVD 133 (436)
Q Consensus 101 L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~ 133 (436)
|.+.++.++.+.+..++.....+...+.+.|+.
T Consensus 148 l~~~~~~~~~~vi~~~~~~~~~i~~~L~~~g~~ 180 (229)
T TIGR01465 148 LADLAKHGATMAIFLSAHILDKVVKELIEGGYS 180 (229)
T ss_pred HHHHhcCCCeEEEECcHHHHHHHHHHHHHcCcC
Confidence 888887777877776666667777777787874
No 85
>PRK00170 azoreductase; Reviewed
Probab=34.16 E-value=2.9e+02 Score=25.27 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=24.4
Q ss_pred eEEEEEcCcccc-----cchhHHHHHHHhC--CceEEEecCCCCC
Q 013791 31 RVLVLVDDFAIK-----SSHSLYFGSLTSR--GFQLEFKLADDPN 68 (436)
Q Consensus 31 r~LVl~d~~~~~-----~~~S~f~~~L~~r--Gf~v~~~~~~d~~ 68 (436)
|+|+|.-++... ..-..|.+.|+++ |++++.....+..
T Consensus 3 kil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~ 47 (201)
T PRK00170 3 KVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEP 47 (201)
T ss_pred eEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 677777554322 1222578889988 9999987555443
No 86
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=33.83 E-value=2.3e+02 Score=26.85 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=58.0
Q ss_pred CCCeEEEEEcC-cccccchhHHHHHHHhCCceEEEecCCCCCc--ccccccccccC--EEEEeCCCCCcCCCCCCHHHHH
Q 013791 28 TDRRVLVLVDD-FAIKSSHSLYFGSLTSRGFQLEFKLADDPNI--GLQRYGQYLYD--ALVLFCPSVERFGGSIDVASIV 102 (436)
Q Consensus 28 ~~~r~LVl~d~-~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~--~L~~~ge~~yd--~LII~~p~~~~~~~~l~~~~L~ 102 (436)
.|+++.+|..+ +..-..+....+.|.++|.+++.. |.=.++ .....|.+.-+ ..+.+-+... ....+.
T Consensus 89 ~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~vevi-PGiSs~~~a~a~~g~~l~~~~~~~~~~~~~~------~~~~~~ 161 (230)
T TIGR01467 89 EGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVV-PGITSFAACASAAGLPLVEGDESLAILPATA------GEAELE 161 (230)
T ss_pred CCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEe-CChhHHHHHHHHhCCCcccCCceEEEEeCCC------CHHHHH
Confidence 46666666632 334455566777777778888764 332222 23355555332 2222223221 234578
Q ss_pred HHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 103 DFVDSGHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 103 ~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
+.++.++.+.++.++...+.+...+.+.|.
T Consensus 162 ~~~~~~~~vvil~~~~~~~~i~~~L~~~g~ 191 (230)
T TIGR01467 162 KALAEFDTVVLMKVGRNLPQIKEALAKLGR 191 (230)
T ss_pred HHhccCCeEEEEecCCCHHHHHHHHHHcCC
Confidence 889999998888777666678888888886
No 87
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=33.30 E-value=68 Score=26.09 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=27.5
Q ss_pred ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCC
Q 013791 42 KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE 90 (436)
Q Consensus 42 ~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~ 90 (436)
.+..|...+.|+++||+|....-.+ +-..+|.+|+-.-...
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~~--------~~~~~daiVvtG~~~n 47 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENEQ--------DLQNVDAIVVTGQDTN 47 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCcc--------ccCCcCEEEEECCCcc
Confidence 4567889999999999998542111 1245688888654443
No 88
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=33.24 E-value=2.5e+02 Score=28.10 Aligned_cols=96 Identities=18% Similarity=0.289 Sum_probs=54.9
Q ss_pred ccchhHHHHHHHhCCceEEEecCCC-----CCccc---cccc---ccc----------cCEEEEeCCCCCcCCCCCCHHH
Q 013791 42 KSSHSLYFGSLTSRGFQLEFKLADD-----PNIGL---QRYG---QYL----------YDALVLFCPSVERFGGSIDVAS 100 (436)
Q Consensus 42 ~~~~S~f~~~L~~rGf~v~~~~~~d-----~~~~L---~~~g---e~~----------yd~LII~~p~~~~~~~~l~~~~ 100 (436)
+...-.|+++|++-+-++++..-+. ..+.. .-+| .++ -+.-|++++-++ |.+..+.
T Consensus 117 ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvq---Gp~~~~~ 193 (304)
T COG2248 117 RRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQ---GPINDEA 193 (304)
T ss_pred HHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEccccc---CCCccHH
Confidence 3445569999999888888631110 00000 0111 111 156677877666 3366666
Q ss_pred HHHHHHCCCcEEEEeCCCC---------------cHHHHHHHHHcCceecCCCCeEEEeccC
Q 013791 101 IVDFVDSGHDLIVAADSNA---------------SDLIREVATECGVDFDEDPAAMVIDHIN 147 (436)
Q Consensus 101 L~~Fvd~GGNiLi~~~~~~---------------~~~lr~ll~ElGI~~~~~~~~~VvDhf~ 147 (436)
|.--++.-=+|+|+++|-+ -.+|+.+.++.+ .++|+||.-
T Consensus 194 l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~-------~~lViDHHl 248 (304)
T COG2248 194 LEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETN-------ATLVIDHHL 248 (304)
T ss_pred HHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCc-------ceEEEeehh
Confidence 6666667778988877543 145555554432 568999863
No 89
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=32.86 E-value=1.1e+02 Score=32.49 Aligned_cols=75 Identities=23% Similarity=0.115 Sum_probs=50.6
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecC-CCCCcccccccccccCEEEEeCCCCC----cCCC-CCCHHHHHH
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLA-DDPNIGLQRYGQYLYDALVLFCPSVE----RFGG-SIDVASIVD 103 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~-~d~~~~L~~~ge~~yd~LII~~p~~~----~~~~-~l~~~~L~~ 103 (436)
-|+-|..|. .....|..-++.|++.|.++.+..| +|+. .+.||.|||=..... .+.. ..-.+.|++
T Consensus 246 ~~iava~d~-af~f~y~e~~~~L~~~g~~~~~~~~~~~~~-------l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~ 317 (451)
T PRK01077 246 VRIAVARDA-AFNFYYPENLELLRAAGAELVFFSPLADEA-------LPDCDGLYLGGGYPELFAAELAANTSMRASIRA 317 (451)
T ss_pred ceEEEEecC-cccccHHHHHHHHHHCCCEEEEeCCcCCCC-------CCCCCEEEeCCCchhhHHHHHhhCchhHHHHHH
Confidence 367777777 7788888889999999999998766 3432 235687766444311 1211 112488999
Q ss_pred HHHCCCcEE
Q 013791 104 FVDSGHDLI 112 (436)
Q Consensus 104 Fvd~GGNiL 112 (436)
|+++|+-|+
T Consensus 318 ~~~~g~~i~ 326 (451)
T PRK01077 318 AAAAGKPIY 326 (451)
T ss_pred HHHcCCCEE
Confidence 999998766
No 90
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=32.83 E-value=77 Score=29.57 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=42.5
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCC---CC-CCHHHHHHHHH
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFG---GS-IDVASIVDFVD 106 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~---~~-l~~~~L~~Fvd 106 (436)
|+.||.=.....+.-..+.+.|+.+|++++....++. .++ ..||.|||-........ .. --.+.|+++++
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-~~l-----~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~ 75 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-GDL-----PDCDALIIPGGESTTIGRLMKREGILDEIKEKIE 75 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-HHh-----ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHH
Confidence 3444443333333334577788899998887655442 122 35798777654322110 00 11477888888
Q ss_pred CCCcEE
Q 013791 107 SGHDLI 112 (436)
Q Consensus 107 ~GGNiL 112 (436)
+|.-+|
T Consensus 76 ~~~pil 81 (200)
T PRK13527 76 EGLPIL 81 (200)
T ss_pred CCCeEE
Confidence 877555
No 91
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=32.70 E-value=2.4e+02 Score=29.00 Aligned_cols=42 Identities=5% Similarity=0.111 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHCCC-cEEEEeCC-CCcHHHHHHHHHcCceecCC
Q 013791 96 IDVASIVDFVDSGH-DLIVAADS-NASDLIREVATECGVDFDED 137 (436)
Q Consensus 96 l~~~~L~~Fvd~GG-NiLi~~~~-~~~~~lr~ll~ElGI~~~~~ 137 (436)
.+...+.++++-+- +|||.++| ..+++...=++.+||...--
T Consensus 63 ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~Ri 106 (337)
T COG2247 63 YNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRI 106 (337)
T ss_pred ccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEe
Confidence 56666777777664 45555554 34666667777777755443
No 92
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=32.28 E-value=55 Score=30.83 Aligned_cols=67 Identities=21% Similarity=0.392 Sum_probs=35.7
Q ss_pred CcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCc----eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 307 PAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSP----YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 307 ~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP----~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
|..=.++|.|+.+.+|- .+|+ |-|--++.--+| ..|..|.+.++-.|.+.|+ |++=|.|.|.|.=.+
T Consensus 20 p~KrvvGe~v~V~Adif--~DGH------D~l~A~l~~r~~~~~~w~~vpM~~~gnDrW~a~f~-~~~~G~~~f~VeAW~ 90 (187)
T PF11896_consen 20 PAKRVVGEPVPVSADIF--RDGH------DALAAELLWRHPGEREWQEVPMTPLGNDRWEASFT-PDRPGRYEFRVEAWV 90 (187)
T ss_dssp -EEEETT-EEEEEEEE----SSS------S-EEEEEEEE-TTS-B----B-EESTS-EEEEEEE---SSEEEEEEEEEEE
T ss_pred cceeecCCeEEEEEEEE--ecCC------CcEEEEEEEECCCCCcceeeccccCCCCEEEEEEE-CCCceeEEEEEEEEe
Confidence 33345677777777774 3331 222222222222 3578888888999999999 889999999997554
No 93
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=32.15 E-value=92 Score=33.38 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=56.5
Q ss_pred EEeCCCCCcC-CCCCCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEe
Q 013791 83 VLFCPSVERF-GGSIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIA 161 (436)
Q Consensus 83 II~~p~~~~~-~~~l~~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~~~~~~~VvDhf~~~~~~~~~~~~~iv 161 (436)
+|..++.+++ +...+.-.-.-|+.+||+|+|+.+...-+.+=.+.--..|+-+|. ....|+.--|.-+....+.++++
T Consensus 264 il~~~s~k~~~~~~~E~~~As~~~~kya~i~Vl~~~~~~~~~p~~~~r~niytdp~-~p~~v~~g~y~~g~p~~~spv~~ 342 (450)
T PRK04165 264 IIAFPIEAWMSDPMKEAAIASTLIAKYADILVLHDIEPWELLPLLTLRQNIYTDPQ-KPVAVEPGIYEIGNPDENSPVLV 342 (450)
T ss_pred EEEcchhhcccchHHHHHHHHHHHHhCCcEEEEcCCCHHHHhhHHHHHHhccCCCC-CCeecCCCceeCCCCCCCCCEEE
Confidence 5555666654 333444556679999999999988776666767777889999998 56677866666543333346777
Q ss_pred eccc
Q 013791 162 SDDF 165 (436)
Q Consensus 162 ~~~~ 165 (436)
+.|+
T Consensus 343 t~nf 346 (450)
T PRK04165 343 TTNF 346 (450)
T ss_pred Eeee
Confidence 6654
No 94
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=31.54 E-value=50 Score=26.47 Aligned_cols=31 Identities=23% Similarity=0.583 Sum_probs=23.6
Q ss_pred HHHHCCCcEEEEeCCCC--------cHHHHHHHHHcCcee
Q 013791 103 DFVDSGHDLIVAADSNA--------SDLIREVATECGVDF 134 (436)
Q Consensus 103 ~Fvd~GGNiLi~~~~~~--------~~~lr~ll~ElGI~~ 134 (436)
.++. |.|++++-+.+. .+.++.+++|+||..
T Consensus 36 ~li~-~anvi~A~g~~vkWSikLD~eeQL~~ia~~lGi~i 74 (75)
T PF11869_consen 36 TLIG-GANVIIANGGEVKWSIKLDNEEQLQAIAEELGIDI 74 (75)
T ss_pred hhcC-CCcEEEEeCcceEEEEEcCCHHHHHHHHHHhCccc
Confidence 3454 888888766433 578999999999975
No 95
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.91 E-value=64 Score=28.80 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=23.0
Q ss_pred CEEEEeCCCC-CcCCCCCCHHHHHHHHHCCCcE
Q 013791 80 DALVLFCPSV-ERFGGSIDVASIVDFVDSGHDL 111 (436)
Q Consensus 80 d~LII~~p~~-~~~~~~l~~~~L~~Fvd~GGNi 111 (436)
|.+|++..-. ... ..+++..+++++.+||=
T Consensus 87 DvvVLlGGLaMP~~--gv~~d~~kel~ee~~~k 117 (154)
T COG4090 87 DVVVLLGGLAMPKI--GVTPDDAKELLEELGNK 117 (154)
T ss_pred cEEEEEcccccCcC--CCCHHHHHHHHHhcCCC
Confidence 8999987644 223 37999999999998875
No 96
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.86 E-value=52 Score=26.08 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=19.6
Q ss_pred ccccCCCceEEEEEecCCceeeeEEEEe
Q 013791 352 TLSTDQKGHYSAEFKVPDVYGVFQFKVE 379 (436)
Q Consensus 352 ~L~~~~~~~y~~~f~~PD~hGvf~f~v~ 379 (436)
.|+..++|.|+++..+|.--=-|+|.||
T Consensus 29 ~m~~~~~G~w~~~~~l~~G~y~Ykf~vd 56 (82)
T cd02861 29 PMEREGDGLWVVTVELRPGRYEYKFVVD 56 (82)
T ss_pred cCEECCCCcEEEEEeCCCCcEEEEEEEC
Confidence 4555567999999988762114888876
No 97
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=30.58 E-value=1.1e+02 Score=24.01 Aligned_cols=53 Identities=15% Similarity=0.401 Sum_probs=34.4
Q ss_pred eeeecccCCeEEEEEEeC--ceEeeccc-cCCCceEEEEEecCCce-e-eeEEEEeeee
Q 013791 329 SWEPYVSDDVQVQFYMMS--PYVLKTLS-TDQKGHYSAEFKVPDVY-G-VFQFKVEYQR 382 (436)
Q Consensus 329 ~W~P~~~ddiQlEf~mld--P~~R~~L~-~~~~~~y~~~f~~PD~h-G-vf~f~v~Y~R 382 (436)
-|.|- |+.|.|-..--+ |..+..|+ ..+.|.++++..-.=.+ + -|+|+|+...
T Consensus 17 vwaP~-A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 17 VWAPN-AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EE-TT-ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EECCC-CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 35553 466666555554 45667777 57899999988742233 3 7899998765
No 98
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=30.55 E-value=4.3e+02 Score=28.81 Aligned_cols=92 Identities=20% Similarity=0.373 Sum_probs=53.5
Q ss_pred CCCeEEEEEcCccc-ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 28 TDRRVLVLVDDFAI-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 28 ~~~r~LVl~d~~~~-~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
.++|++|+-|-..+ -..-+.+...|+..|.++.+..|+. ..+.++ +++..+.+..+
T Consensus 53 ~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r---------------------~~~~yg--~~~~~i~~~~~ 109 (539)
T TIGR00644 53 NNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNR---------------------ITEGYG--LSPEALREAIE 109 (539)
T ss_pred cCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCC---------------------CcccCC--CCHHHHHHHHh
Confidence 35677776655333 2333446667777776665432221 113232 45566677777
Q ss_pred CCCcEEEEeCCCCcHHHH-HHHHHcCceecCCCCeEEEeccCc
Q 013791 107 SGHDLIVAADSNASDLIR-EVATECGVDFDEDPAAMVIDHINY 148 (436)
Q Consensus 107 ~GGNiLi~~~~~~~~~lr-~ll~ElGI~~~~~~~~~VvDhf~~ 148 (436)
.|.+++|++|.+..+-.. ..+.+.|+ ..+++||+..
T Consensus 110 ~~~~LiI~vD~G~~~~~~~~~~~~~g~------~vIviDHH~~ 146 (539)
T TIGR00644 110 NGVSLIITVDNGISAHEEIDYAKELGI------DVIVTDHHEP 146 (539)
T ss_pred cCCCEEEEeCCCcccHHHHHHHHhcCC------CEEEECCCCC
Confidence 788999999987653222 34566565 3588998743
No 99
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=29.84 E-value=1.1e+02 Score=34.39 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=59.3
Q ss_pred chhHHHHHHHhCCceEEEecCCCCCccccccccccc-CEEEEeCCCCCcCCCC------CCHHHHHHHHHCCCcEEEEeC
Q 013791 44 SHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLY-DALVLFCPSVERFGGS------IDVASIVDFVDSGHDLIVAAD 116 (436)
Q Consensus 44 ~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~y-d~LII~~p~~~~~~~~------l~~~~L~~Fvd~GGNiLi~~~ 116 (436)
+|.-.+++|...-++|+|..=+| +.+.|.+.- |.||=.......++|. -..+.|.+|+.+||.++=.++
T Consensus 469 sy~GvlE~LSG~p~dV~FisFdD----i~~~gi~~didViIN~G~a~ta~SGG~~W~d~~~~~aLr~fV~~GGglIGVgD 544 (719)
T TIGR02336 469 SYYGILECLSGMPVEVEFISFDD----ILEHGIDSDIDVIINGGDADTAWSGGDVWTNPKLVETVRAWVRGGGGFVGVGE 544 (719)
T ss_pred hHHHHHHHhcCCCeeEEEecHHH----HhhcCCCcCCcEEEecCcccccccCccccCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 34447888988999999983333 234466555 5544444433445431 122899999999999994455
Q ss_pred CCC----cHHHHHHHHHcCceecCCCCeEEEe
Q 013791 117 SNA----SDLIREVATECGVDFDEDPAAMVID 144 (436)
Q Consensus 117 ~~~----~~~lr~ll~ElGI~~~~~~~~~VvD 144 (436)
+.. ...- .|+.=|||+.+.. .++=.|
T Consensus 545 psa~v~~G~~P-qLadvLGV~~E~f-~tL~~d 574 (719)
T TIGR02336 545 PSAAPQNGRFF-QLADVIGVDKERY-QTLSVD 574 (719)
T ss_pred CccCCcCCCCc-chhhhcceeeeee-eccccc
Confidence 532 1122 6777789999886 444444
No 100
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=29.68 E-value=2.1e+02 Score=26.47 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=51.4
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEE
Q 013791 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (436)
Q Consensus 33 LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiL 112 (436)
++++|+. +.-+| .+.+-|+++|++++...+++.+ +.......+|.+|+.+....-. ..-....+.+.++.+--||
T Consensus 2 il~id~~-dsft~-~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~iilsgGp~~~~-~~~~~~~~i~~~~~~~PiL 76 (193)
T PRK08857 2 LLMIDNY-DSFTY-NLYQYFCELGAQVKVVRNDEID--IDGIEALNPTHLVISPGPCTPN-EAGISLQAIEHFAGKLPIL 76 (193)
T ss_pred EEEEECC-CCcHH-HHHHHHHHCCCcEEEEECCCCC--HHHHhhCCCCEEEEeCCCCChH-HCcchHHHHHHhcCCCCEE
Confidence 4566765 22222 3778889999999987665433 2222233468888876543211 1112234445565554455
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecC
Q 013791 113 -VAADSNASDLIREVATECGVDFDE 136 (436)
Q Consensus 113 -i~~~~~~~~~lr~ll~ElGI~~~~ 136 (436)
|- -+.+.++..+|=.+.+
T Consensus 77 GIC------lG~Qlia~a~Gg~v~~ 95 (193)
T PRK08857 77 GVC------LGHQAIAQVFGGQVVR 95 (193)
T ss_pred EEc------HHHHHHHHHhCCEEEe
Confidence 32 2456677777765554
No 101
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=29.63 E-value=2.8e+02 Score=25.20 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=35.5
Q ss_pred hhHHHHHHHhCC---ceEEEecCCCCCcccccccccccCEEEEeCCCCCc-CCCCC----CHHHHHHHHHCCCcEE
Q 013791 45 HSLYFGSLTSRG---FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER-FGGSI----DVASIVDFVDSGHDLI 112 (436)
Q Consensus 45 ~S~f~~~L~~rG---f~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~-~~~~l----~~~~L~~Fvd~GGNiL 112 (436)
.+.+.+-|+..| ++++...+.+... ......||.+||-...... ....- ..+.|...+++|.-+|
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pil 85 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL---LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVL 85 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC---CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEE
Confidence 456666677777 7888765555432 2233467998887654432 21111 1134455566665444
No 102
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=29.57 E-value=4.2e+02 Score=27.93 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=73.5
Q ss_pred eEEEEEcCc--ccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013791 31 RVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (436)
Q Consensus 31 r~LVl~d~~--~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G 108 (436)
++++++++. .....-....+.|.+.|-++....-.+++.+-.......++.+||-+|+.- -+.....+.++-++..=
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~~-~~~~p~i~~~l~~v~~~ 326 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTIN-GGAHPPIQTALGYVLAL 326 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCccc-CCCCchHHHHHHHHHhc
Confidence 799999864 233344468889999999999765555555544555666799999999742 11224567777777642
Q ss_pred C----cEEEEeC----CCCcHHHHHHHHHcCceecCC
Q 013791 109 H----DLIVAAD----SNASDLIREVATECGVDFDED 137 (436)
Q Consensus 109 G----NiLi~~~----~~~~~~lr~ll~ElGI~~~~~ 137 (436)
. -+.+.++ ....+.++++++++|.++...
T Consensus 327 ~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 327 APKNKLAGVFGSYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred cCcCceEEEEeccCCCCcchHHHHHHHHhcCcEEecc
Confidence 2 2445553 334688999999999999986
No 103
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=29.55 E-value=1.7e+02 Score=27.94 Aligned_cols=97 Identities=10% Similarity=0.127 Sum_probs=59.1
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCccccccc--ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG--QYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~g--e~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G 108 (436)
|+.++.|.... +...+.+.|+++|+++....++|..+.+.... ...+|.++.-. .. ......+.+.++.-
T Consensus 1 ~~~~~~~~~~~--~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~--~~----~~~~~~~~~~l~~~ 72 (277)
T TIGR00768 1 KLAILYDRIRL--DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRI--VS----MFRGLAVARYLESL 72 (277)
T ss_pred CEEEEEcCCCH--HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEec--hh----HhhHHHHHHHHHHC
Confidence 35667776432 66689999999999999888877655443211 23468766544 11 11234666777766
Q ss_pred CcEEEEeCCC-----Cc-HHHHHHHHHcCceecC
Q 013791 109 HDLIVAADSN-----AS-DLIREVATECGVDFDE 136 (436)
Q Consensus 109 GNiLi~~~~~-----~~-~~lr~ll~ElGI~~~~ 136 (436)
|-- +..++. .. .....++++.||...+
T Consensus 73 g~~-~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~ 105 (277)
T TIGR00768 73 GVP-VINSSDAILNAGDKFLTSQLLAKAGLPQPR 105 (277)
T ss_pred CCe-eeCCHHHHHHHhhHHHHHHHHHHCCCCCCC
Confidence 633 333331 11 2457889999997644
No 104
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=29.22 E-value=4.3e+02 Score=23.80 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=46.5
Q ss_pred HHHHHHHhCCceEEEecCCCCCcc-cc------------cccccccCEEEEeCCCCCcCCCCCCH--HHHHHHHHC---C
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNIG-LQ------------RYGQYLYDALVLFCPSVERFGGSIDV--ASIVDFVDS---G 108 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~~-L~------------~~ge~~yd~LII~~p~~~~~~~~l~~--~~L~~Fvd~---G 108 (436)
.+.+.|++.|.+++.....|-.+. +. .......|.+|+..|--- .+++. +.+.|++.. .
T Consensus 21 ~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~---~sip~~LK~~iD~~~~~~l~ 97 (171)
T TIGR03567 21 HVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYK---ASYSGVLKALLDLLPQRALR 97 (171)
T ss_pred HHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCccc---CCCCHHHHHHHHhCChhhhC
Confidence 356677778888776533332111 00 111224599999999654 22332 444444422 1
Q ss_pred Cc-EEEEeCCCC--c-----HHHHHHHHHcCceecCC
Q 013791 109 HD-LIVAADSNA--S-----DLIREVATECGVDFDED 137 (436)
Q Consensus 109 GN-iLi~~~~~~--~-----~~lr~ll~ElGI~~~~~ 137 (436)
|. +.+.+..+. . ..+|.++..+|+...+.
T Consensus 98 ~K~v~~~~~gg~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 98 GKVVLPIATGGSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CCEEEEEEcCCchhHHHHHHHHHHHHHHHcCCccccc
Confidence 33 333222121 1 36899999999965554
No 105
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=29.14 E-value=40 Score=31.05 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=32.1
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCE
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDA 81 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~ 81 (436)
.+|.|.++|+. ..-..++..+|+.|||+++...--.+.+.+.+...|.|-.
T Consensus 8 pd~~lllvdDD--~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAv 58 (182)
T COG4567 8 PDKSLLLVDDD--TPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAV 58 (182)
T ss_pred CCceeEEecCC--hHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEE
Confidence 45678888763 2333467788999999999753333334455555665543
No 106
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=29.03 E-value=1.6e+02 Score=27.39 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=59.1
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCce-EEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCC
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQ-LEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH 109 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~-v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GG 109 (436)
..++-+|.....- ..-.+.++..|.+ +++...+-.++. . +..||.++...- ..+ ..-.+.+.+.+..||
T Consensus 70 ~~V~giD~s~~~l--~~A~~~~~~~~l~~i~~~~~d~~~~~--~--~~~fDlV~~~~~--~~~--~~~l~~~~~~LkpGG 139 (187)
T PRK00107 70 LKVTLVDSLGKKI--AFLREVAAELGLKNVTVVHGRAEEFG--Q--EEKFDVVTSRAV--ASL--SDLVELCLPLLKPGG 139 (187)
T ss_pred CeEEEEeCcHHHH--HHHHHHHHHcCCCCEEEEeccHhhCC--C--CCCccEEEEccc--cCH--HHHHHHHHHhcCCCe
Confidence 3566667643221 1223444455543 555432222221 1 457899886431 111 112377888999999
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCceecCC
Q 013791 110 DLIVAADSNASDLIREVATECGVDFDED 137 (436)
Q Consensus 110 NiLi~~~~~~~~~lr~ll~ElGI~~~~~ 137 (436)
.+++...+.....+.++++++|..+..-
T Consensus 140 ~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 140 RFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred EEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 9998877777888999999999998874
No 107
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.02 E-value=1.4e+02 Score=24.99 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHHhCCceEEEecCCCCCccc-ccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCC--cEE-EEeCCCCcHH
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNIGL-QRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH--DLI-VAADSNASDL 122 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~~L-~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GG--NiL-i~~~~~~~~~ 122 (436)
-+...|+..||++.+..++-..-.+ ..-.+...|.+.|.......+ ...+.+.+-+.+-+ ++. ++++.....
T Consensus 18 ~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~---~~~~~~i~~l~~~~~~~~~i~vGG~~~~~- 93 (119)
T cd02067 18 IVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHM---TLMKEVIEELKEAGLDDIPVLVGGAIVTR- 93 (119)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccH---HHHHHHHHHHHHcCCCCCeEEEECCCCCh-
Confidence 4667889999999876543221122 233344558766655434433 23344444444433 554 444544332
Q ss_pred HHHHHHHcCce
Q 013791 123 IREVATECGVD 133 (436)
Q Consensus 123 lr~ll~ElGI~ 133 (436)
--..+++.|++
T Consensus 94 ~~~~~~~~G~D 104 (119)
T cd02067 94 DFKFLKEIGVD 104 (119)
T ss_pred hHHHHHHcCCe
Confidence 22588999875
No 108
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=28.84 E-value=1.5e+02 Score=30.89 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=72.6
Q ss_pred eEEEEEcCcccccchhHHHHHHHh---CCceEEEecCCCCCcccccc-cccccCEEEEeCCCCC-cCCCCCC---HHHHH
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTS---RGFQLEFKLADDPNIGLQRY-GQYLYDALVLFCPSVE-RFGGSID---VASIV 102 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~---rGf~v~~~~~~d~~~~L~~~-ge~~yd~LII~~p~~~-~~~~~l~---~~~L~ 102 (436)
++||--+.-.....-..-...|+. -.|.|....++ .|... -...++.|| +|.-.+ .....+. .+.|+
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~----~l~~~pw~~~~~LlV-~PGG~d~~y~~~l~~~g~~~Ir 76 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTAD----ELLNEPWQSKCALLV-MPGGADLPYCRSLNGEGNRRIR 76 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHH----HhhcCccccCCcEEE-ECCCcchHHHHhhChHHHHHHH
Confidence 355544444333333445555542 35888876322 12221 123456554 444222 1112223 47999
Q ss_pred HHHHCCCcEE-EEeCC----CC-----cH-HHH-HHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccce
Q 013791 103 DFVDSGHDLI-VAADS----NA-----SD-LIR-EVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKADV 170 (436)
Q Consensus 103 ~Fvd~GGNiL-i~~~~----~~-----~~-~lr-~ll~ElGI~~~~~~~~~VvDhf~~~~~~~~~~~~~iv~~~~i~~~~ 170 (436)
+||++||+-| +-++. .. +. .+. .=-+||++.+---+|. +..-|.|... .+...+-+. +..+.
T Consensus 77 ~fV~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~-~~~gf~Y~se--~Gara~~l~---~~~~~ 150 (367)
T PF09825_consen 77 QFVENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGP-AFPGFQYNSE--SGARAVKLK---VNDSQ 150 (367)
T ss_pred HHHHcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCc-cccCCccCCC--CCeEeEEEE---ecCCC
Confidence 9999999988 54441 11 11 111 1234666665444354 4566667632 111111111 11110
Q ss_pred eccCCcccCceeeeceeEEeecCCc-eEEeee
Q 013791 171 ILGSKKIEAPVLFQGIGHSLNPANS-LVLKVL 201 (436)
Q Consensus 171 i~~~~~~~~~vl~~g~g~~l~~~n~-l~~pIL 201 (436)
.......++|+|.|.-++.++. .-+-||
T Consensus 151 ---~~~~~~~~yynGG~~Fv~~~~~~~~v~vL 179 (367)
T PF09825_consen 151 ---AVPSEFSSYYNGGGVFVDADKYDKNVEVL 179 (367)
T ss_pred ---CCCceeEEEECCceEEeCccccCCCeEEE
Confidence 0001123578888888874443 345555
No 109
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.58 E-value=2.1e+02 Score=27.99 Aligned_cols=84 Identities=8% Similarity=0.007 Sum_probs=50.2
Q ss_pred hHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCC-------C
Q 013791 46 SLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADS-------N 118 (436)
Q Consensus 46 S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~-------~ 118 (436)
..+.+.|+++||++....+++..+.+.+. ..+|.+++.....- + ....+..+++.=| +-+.+.+ .
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~--~~~D~v~~~~~g~~--~---~~~~~~~~le~~g-i~~~g~~~~~~~~~~ 97 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLKE--LGFDRVFNALHGRG--G---EDGTIQGLLELLG-IPYTGSGVLASALAM 97 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhcc--CCCCEEEEecCCCC--C---CccHHHHHHHHcC-CCccCCCHHHHHHHh
Confidence 47999999999999887666654443322 35688777643221 1 1123444555444 3333322 1
Q ss_pred CcHHHHHHHHHcCceecCC
Q 013791 119 ASDLIREVATECGVDFDED 137 (436)
Q Consensus 119 ~~~~lr~ll~ElGI~~~~~ 137 (436)
.-...+.+++++||...+.
T Consensus 98 dK~~~k~~l~~~gIp~p~~ 116 (304)
T PRK01372 98 DKLRTKLVWQAAGLPTPPW 116 (304)
T ss_pred CHHHHHHHHHHCCCCCCCE
Confidence 1245678999999998874
No 110
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=28.18 E-value=3e+02 Score=26.98 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=37.0
Q ss_pred ccCCCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEe------cCCCCCcccccccccccCEEEEeCCCC
Q 013791 23 SPENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFK------LADDPNIGLQRYGQYLYDALVLFCPSV 89 (436)
Q Consensus 23 ~~~~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~------~~~d~~~~L~~~ge~~yd~LII~~p~~ 89 (436)
++.+.+|.|+||-=.. +.-+.+.+.|++.|.++-.. .+++..+.-.-..-..||.||+-++..
T Consensus 12 ~~~~l~g~~IlvTRp~----~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA 80 (266)
T PRK08811 12 AATADAAWTLISLRPS----GEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA 80 (266)
T ss_pred CCcCCCCCEEEEeCCH----HHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH
Confidence 3566788888775432 33467999999999998742 122221110001123678888777644
No 111
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=28.08 E-value=66 Score=29.09 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=42.5
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCce-EEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCH-------HHH
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQ-LEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDV-------ASI 101 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~-v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~-------~~L 101 (436)
+..++.+|-.. .....-...++..+.+ ++... .|. +.......||.+|..||-... ..-.. +.-
T Consensus 55 ~~~v~~vDi~~--~a~~~a~~n~~~n~~~~v~~~~-~d~---~~~~~~~~fD~Iv~NPP~~~~--~~~~~~~~~~~i~~a 126 (170)
T PF05175_consen 55 DAKVTAVDINP--DALELAKRNAERNGLENVEVVQ-SDL---FEALPDGKFDLIVSNPPFHAG--GDDGLDLLRDFIEQA 126 (170)
T ss_dssp CEEEEEEESBH--HHHHHHHHHHHHTTCTTEEEEE-SST---TTTCCTTCEEEEEE---SBTT--SHCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCH--HHHHHHHHHHHhcCcccccccc-ccc---cccccccceeEEEEccchhcc--cccchhhHHHHHHHH
Confidence 43477777642 2223344556666666 66542 221 112225788999999994442 11112 334
Q ss_pred HHHHHCCCcEEEEeCCCC
Q 013791 102 VDFVDSGHDLIVAADSNA 119 (436)
Q Consensus 102 ~~Fvd~GGNiLi~~~~~~ 119 (436)
.++++.||.+++..+...
T Consensus 127 ~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 127 RRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp HHHEEEEEEEEEEEETTS
T ss_pred HHhccCCCEEEEEeecCC
Confidence 556667999977666554
No 112
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=27.90 E-value=81 Score=28.97 Aligned_cols=22 Identities=27% Similarity=0.726 Sum_probs=15.5
Q ss_pred CCceEEEEEEEEEeC-------Ceeeecc
Q 013791 313 NDDLEYSVEIYEWSG-------TSWEPYV 334 (436)
Q Consensus 313 ~d~v~y~i~i~e~~~-------~~W~P~~ 334 (436)
+-|++-+.+|.-..+ |.|+||-
T Consensus 64 ~aDiHlEADIha~~~n~nGfg~Gew~pYL 92 (179)
T COG3470 64 EADIHLEADIHALKGNKNGFGEGEWVPYL 92 (179)
T ss_pred hccceeeeehhccccCCCCcCcccccceE
Confidence 456777777776633 5899984
No 113
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=27.73 E-value=1.8e+02 Score=29.86 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=41.2
Q ss_pred CCCCCcccccccccccCEEEEeCCCCC-cCC---CC----C------CHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHH
Q 013791 64 ADDPNIGLQRYGQYLYDALVLFCPSVE-RFG---GS----I------DVASIVDFVDSGHDLIVAADSNASDLIREVATE 129 (436)
Q Consensus 64 ~~d~~~~L~~~ge~~yd~LII~~p~~~-~~~---~~----l------~~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~E 129 (436)
+++..+.+....+..||.|||+..... .++ .. . +.+.|.+.+..|.+++|.++....-.+-..+.+
T Consensus 86 ~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~ 165 (396)
T PRK09754 86 RDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQ 165 (396)
T ss_pred CCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHH
Confidence 333333344334577899999877553 221 10 1 124466677788899988776555455566666
Q ss_pred cCce
Q 013791 130 CGVD 133 (436)
Q Consensus 130 lGI~ 133 (436)
.|.+
T Consensus 166 ~g~~ 169 (396)
T PRK09754 166 RRCK 169 (396)
T ss_pred cCCe
Confidence 6653
No 114
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.64 E-value=2.1e+02 Score=27.19 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=53.6
Q ss_pred EEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCc-
Q 013791 32 VLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHD- 110 (436)
Q Consensus 32 ~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGN- 110 (436)
-++++|+. +..+| .+.+.|++.|.+++..-.+ .+++......++|+|||-|....---.....+.|.+| .|+
T Consensus 3 ~IL~IDNy-DSFty-NLv~yl~~lg~~v~V~rnd--~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~---~~~~ 75 (191)
T COG0512 3 MILLIDNY-DSFTY-NLVQYLRELGAEVTVVRND--DISLELIEALKPDAIVISPGPGTPKDAGISLELIRRF---AGRI 75 (191)
T ss_pred eEEEEECc-cchHH-HHHHHHHHcCCceEEEECC--ccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHh---cCCC
Confidence 35667774 22222 5677888889888876444 3344445555679988876543211112355666666 444
Q ss_pred -EE-EEeCCCCcHHHHHHHHHcCceecCC
Q 013791 111 -LI-VAADSNASDLIREVATECGVDFDED 137 (436)
Q Consensus 111 -iL-i~~~~~~~~~lr~ll~ElGI~~~~~ 137 (436)
|| |-+ ....++.-||=++...
T Consensus 76 PiLGVCL------GHQai~~~fGg~V~~a 98 (191)
T COG0512 76 PILGVCL------GHQAIAEAFGGKVVRA 98 (191)
T ss_pred CEEEECc------cHHHHHHHhCCEEEec
Confidence 44 332 3456777787666553
No 115
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=26.48 E-value=1.8e+02 Score=30.44 Aligned_cols=92 Identities=9% Similarity=0.072 Sum_probs=52.1
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCC
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH 109 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GG 109 (436)
.+.+||+|. +.+ |+ ..+.|+++|+++... |.+.+.. ......+|.|||-+...+.-.-.-..+.+.++++.+-
T Consensus 192 ~~~I~viD~-g~k--~n-i~~~L~~~G~~v~vv-p~~~~~~--~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~ 264 (382)
T CHL00197 192 QLKIIVIDF-GVK--YN-ILRRLKSFGCSITVV-PATSPYQ--DILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNI 264 (382)
T ss_pred CCEEEEEEC-CcH--HH-HHHHHHHCCCeEEEE-cCCCCHH--HHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCC
Confidence 467888898 334 33 788999999999876 4454322 2223357887775443331000012256677775443
Q ss_pred cEE-EEeCCCCcHHHHHHHHHcCcee
Q 013791 110 DLI-VAADSNASDLIREVATECGVDF 134 (436)
Q Consensus 110 NiL-i~~~~~~~~~lr~ll~ElGI~~ 134 (436)
-|| |- -..+-++.-+|-+.
T Consensus 265 PilGIC------lGhQlLa~a~Gg~v 284 (382)
T CHL00197 265 PIFGIC------MGHQILSLALEAKT 284 (382)
T ss_pred CEEEEc------HHHHHHHHHhCCEE
Confidence 344 22 24556666677544
No 116
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=26.18 E-value=4.2e+02 Score=25.47 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=26.5
Q ss_pred HHhhhhccccccCCCCCCeEEEEEcCccc---ccchhHHHHHHHhCCceEEEe
Q 013791 13 SLIPLFSVAFSPENPTDRRVLVLVDDFAI---KSSHSLYFGSLTSRGFQLEFK 62 (436)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~r~LVl~d~~~~---~~~~S~f~~~L~~rGf~v~~~ 62 (436)
|++++-|++ .+.+-+.+.+.|++.+... ......+-+.++++||++...
T Consensus 11 ~~~~~~~~~-~~~~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~ 62 (295)
T PRK10653 11 SAVALSATV-SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 (295)
T ss_pred HHHHHHHhc-CCccccCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEe
Confidence 455555544 4444445566666654321 223333445667889988765
No 117
>COG1438 ArgR Arginine repressor [Transcription]
Probab=26.02 E-value=2.1e+02 Score=26.10 Aligned_cols=85 Identities=20% Similarity=0.349 Sum_probs=47.5
Q ss_pred chhHHHHHHHhCCceEEEecC-CC-CCcccc----cccccccCEEEEeCCCCCcCCCCCCH-HHHHHH---HHCCCcEEE
Q 013791 44 SHSLYFGSLTSRGFQLEFKLA-DD-PNIGLQ----RYGQYLYDALVLFCPSVERFGGSIDV-ASIVDF---VDSGHDLIV 113 (436)
Q Consensus 44 ~~S~f~~~L~~rGf~v~~~~~-~d-~~~~L~----~~ge~~yd~LII~~p~~~~~~~~l~~-~~L~~F---vd~GGNiLi 113 (436)
+-....+.|+++|++++=... .| ..+.+. ..|.+.|. +++... ....-.. ..+.++ ++..||++|
T Consensus 22 TQ~Elv~~L~~~Gi~vTQaTvSRDlkelglvKv~~~~g~~~Y~----l~~~~~-~~~~~~~~~~~~~~v~~vd~~~~~iv 96 (150)
T COG1438 22 TQEELVELLQEEGIEVTQATVSRDLKELGLVKVRNEKGTYVYS----LPAELG-VPPTSKLKRYLKDLVLSIDRNGNLIV 96 (150)
T ss_pred CHHHHHHHHHHcCCeEehHHHHHHHHHcCCEEecCCCCcEEEE----eCCccC-CCchhhHHHHHHHHheeeccCCcEEE
Confidence 345688999999999883110 01 111111 22444443 333222 2110111 123333 567899885
Q ss_pred E-eCCCCcHHHHHHHHHcCce
Q 013791 114 A-ADSNASDLIREVATECGVD 133 (436)
Q Consensus 114 ~-~~~~~~~~lr~ll~ElGI~ 133 (436)
+ +.|+....+..++..++.+
T Consensus 97 lkT~PG~A~~ia~~lD~~~~~ 117 (150)
T COG1438 97 LKTSPGAAQLIARLLDSLAKD 117 (150)
T ss_pred EEeCCchHHHHHHHHHhcCch
Confidence 5 6788888999999999887
No 118
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=25.94 E-value=2e+02 Score=28.80 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=46.5
Q ss_pred HHHHHHHhCCceEEEecCCCCC-----c-ccccccccccCEEEEeCCCCCcCCCCCCH--HHHHHHHHCCCcEEEEeCC
Q 013791 47 LYFGSLTSRGFQLEFKLADDPN-----I-GLQRYGQYLYDALVLFCPSVERFGGSIDV--ASIVDFVDSGHDLIVAADS 117 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~-----~-~L~~~ge~~yd~LII~~p~~~~~~~~l~~--~~L~~Fvd~GGNiLi~~~~ 117 (436)
.|.+.|.++|++|-+.+-.++. . .|.+.|.+-+++|++=++....-...+.. +.-.+.+++|=+|....+.
T Consensus 152 ~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGD 230 (275)
T TIGR01680 152 KNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGD 230 (275)
T ss_pred HHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECC
Confidence 4788899999999887655542 2 37789998899999876632111111222 3345667788899866543
No 119
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=25.79 E-value=2.3e+02 Score=23.41 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=50.5
Q ss_pred hhHHHHHHHhCCceEEEecCCCCCcccc-cccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCC-c-EEEEeCCCCcH
Q 013791 45 HSLYFGSLTSRGFQLEFKLADDPNIGLQ-RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH-D-LIVAADSNASD 121 (436)
Q Consensus 45 ~S~f~~~L~~rGf~v~~~~~~d~~~~L~-~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GG-N-iLi~~~~~~~~ 121 (436)
.......|+++||++.+...+-..-.+. .-.+..+|.+.+-.+....+ -....+.+.+++.+ + .++++++..+.
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~---~~~~~l~~~~k~~~p~~~iv~GG~~~t~ 93 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNL---PEAKRLARAIKERNPNIPIVVGGPHATA 93 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHH---HHHHHHHHHHHTTCTTSEEEEEESSSGH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcH---HHHHHHHHHHHhcCCCCEEEEECCchhc
Confidence 3467888999999999874443211222 22233568877755333322 23467777777653 3 55677776655
Q ss_pred HHHHHHHH-cCce
Q 013791 122 LIREVATE-CGVD 133 (436)
Q Consensus 122 ~lr~ll~E-lGI~ 133 (436)
.-+.++++ -|++
T Consensus 94 ~~~~~l~~~~~~D 106 (121)
T PF02310_consen 94 DPEEILREYPGID 106 (121)
T ss_dssp HHHHHHHHHHTSE
T ss_pred ChHHHhccCcCcc
Confidence 55666766 5544
No 120
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=63 Score=33.62 Aligned_cols=77 Identities=19% Similarity=0.385 Sum_probs=48.8
Q ss_pred eeecccCC-eEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEEEEeeeeccce---eee----eeeeEeecCCCC
Q 013791 330 WEPYVSDD-VQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQRLGYT---SLS----LSKQIPVRPYRH 401 (436)
Q Consensus 330 W~P~~~dd-iQlEf~mldP~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t---~l~----~~~~v~VR~~~h 401 (436)
|=-|++|- -|-=++| ||+-.||+ +...-...|.+|-+-|+|||.|--|---|- ++. +-.-.+-.|-.|
T Consensus 414 WW~Yi~drKsrtLlt~--PyhV~tL~--d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk~vp~~H 489 (520)
T KOG4434|consen 414 WWLYIADRKSRTLLTM--PYHVCTLK--DTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAKPVPENH 489 (520)
T ss_pred eeeeeecccccceecc--hhhhhccc--ccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCCCCCCCC
Confidence 44577533 1222333 99999997 445567799999999999999988765332 211 111123347788
Q ss_pred CcccccccC
Q 013791 402 NEYERFLPA 410 (436)
Q Consensus 402 dey~Rfi~~ 410 (436)
++|--.|..
T Consensus 490 pqwd~~~~e 498 (520)
T KOG4434|consen 490 PQWDTAIEE 498 (520)
T ss_pred ccccccccc
Confidence 888765543
No 121
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=25.14 E-value=1.7e+02 Score=28.26 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=57.0
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEe-cCCCCCcccc------cccccccCEEEEeCCCCCcCCCCCCHHHH
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFK-LADDPNIGLQ------RYGQYLYDALVLFCPSVERFGGSIDVASI 101 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~-~~~d~~~~L~------~~ge~~yd~LII~~p~~~~~~~~l~~~~L 101 (436)
++|+|++..+.+. ..+.+.|.++|.++... .++.....+. .......|.+++.++ .+.+.+
T Consensus 123 ~~~vl~~~~~~~r----~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~--------~~v~~~ 190 (248)
T COG1587 123 GKRVLILRGNGGR----EVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSS--------SAVRAL 190 (248)
T ss_pred CCeEEEEcCCCch----HHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCH--------HHHHHH
Confidence 7899999877543 57999999999999863 1222211111 333445588777655 256777
Q ss_pred HHHHHCCCc------EEEEeCCCCcHHHHHHHHHcCce
Q 013791 102 VDFVDSGHD------LIVAADSNASDLIREVATECGVD 133 (436)
Q Consensus 102 ~~Fvd~GGN------iLi~~~~~~~~~lr~ll~ElGI~ 133 (436)
.++++.-+. .++.- ++.....+.++|+.
T Consensus 191 ~~~~~~~~~~~~~~~~v~~I----G~~Ta~~l~~~G~~ 224 (248)
T COG1587 191 LALAPESGIEFLERKRVASI----GPRTAETLKELGIT 224 (248)
T ss_pred HHHccccchhHhhCceEEEe----cHHHHHHHHHcCCc
Confidence 888877774 33333 34455778888875
No 122
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.00 E-value=3.8e+02 Score=25.46 Aligned_cols=100 Identities=11% Similarity=0.056 Sum_probs=64.3
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCC-CcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDP-NIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~-~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~ 107 (436)
..+++.++.... .+.--...+.|.+-|+.+-..+-+.+ .+...+.--..|+.++|=+.+ -++.+++.+.++.
T Consensus 3 ~~~vv~Vir~~~-~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGT------Vl~~e~a~~ai~a 75 (201)
T PRK06015 3 LQPVIPVLLIDD-VEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGT------ILNAKQFEDAAKA 75 (201)
T ss_pred CCCEEEEEEcCC-HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEe------CcCHHHHHHHHHc
Confidence 467777775542 23333567788888876544333322 122222111223445553333 3588999999999
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 013791 108 GHDLIVAADSNASDLIREVATECGVDFDED 137 (436)
Q Consensus 108 GGNiLi~~~~~~~~~lr~ll~ElGI~~~~~ 137 (436)
|.+.++ +|...+.+-..++++||-.-|+
T Consensus 76 GA~Fiv--SP~~~~~vi~~a~~~~i~~iPG 103 (201)
T PRK06015 76 GSRFIV--SPGTTQELLAAANDSDVPLLPG 103 (201)
T ss_pred CCCEEE--CCCCCHHHHHHHHHcCCCEeCC
Confidence 999874 5777888999999999999997
No 123
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=24.68 E-value=1.3e+02 Score=32.08 Aligned_cols=74 Identities=22% Similarity=0.146 Sum_probs=48.6
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCC-CCCcccccccccccCEEEEeCCCCCcCCCCCC-----HHHHHHH
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNIGLQRYGQYLYDALVLFCPSVERFGGSID-----VASIVDF 104 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~-d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~-----~~~L~~F 104 (436)
|+-|+.|. ....-|..=++.|+++|.++.+..|- |+++ +.+|.|+|=......+...+. .+.|++|
T Consensus 246 ~Iava~d~-afnFy~~~~~~~L~~~g~~~~~~~~~~d~~l-------~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~ 317 (449)
T TIGR00379 246 RIAVAQDQ-AFNFYYQDNLDALTHNAAELVPFSPLEDTEL-------PDVDAVYIGGGFPELFAEELSQNQALRDSIKTF 317 (449)
T ss_pred EEEEEech-hhceeHHHHHHHHHHCCCEEEEECCccCCCC-------CCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHH
Confidence 77788885 55666677788899999999987653 4421 244776664333222222232 3889999
Q ss_pred HHCCCcEE
Q 013791 105 VDSGHDLI 112 (436)
Q Consensus 105 vd~GGNiL 112 (436)
+++|+-|+
T Consensus 318 ~~~G~pv~ 325 (449)
T TIGR00379 318 IHQGLPIY 325 (449)
T ss_pred HHcCCCEE
Confidence 99998776
No 124
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=24.67 E-value=1.8e+02 Score=24.83 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=54.5
Q ss_pred eEEEEEcCcccccc--hhHHHHHHHhCCceEEEecCCCCC--ccccc-cccccc-CEEEEeCCCCCcCCCCCCHHHHHHH
Q 013791 31 RVLVLVDDFAIKSS--HSLYFGSLTSRGFQLEFKLADDPN--IGLQR-YGQYLY-DALVLFCPSVERFGGSIDVASIVDF 104 (436)
Q Consensus 31 r~LVl~d~~~~~~~--~S~f~~~L~~rGf~v~~~~~~d~~--~~L~~-~ge~~y-d~LII~~p~~~~~~~~l~~~~L~~F 104 (436)
|++|++...+-+.. ..++...|+..|.+++......+. -.+.. .....+ |.+|+.. |+-+...+.+-
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~G-------GDGTl~~vv~~ 73 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVG-------GDGTLNEVVNG 73 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEE-------SHHHHHHHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEc-------CccHHHHHHHH
Confidence 68899988655332 347788888999888765333321 12222 233333 6766643 44577666666
Q ss_pred HHCCCc----EEEEeCCCCcHHHHHHHHHcCceecCC
Q 013791 105 VDSGHD----LIVAADSNASDLIREVATECGVDFDED 137 (436)
Q Consensus 105 vd~GGN----iLi~~~~~~~~~lr~ll~ElGI~~~~~ 137 (436)
+-+-+. -+-..+.+.. +.|+..+|+...+.
T Consensus 74 l~~~~~~~~~~l~iiP~GT~---N~~ar~lg~~~~~~ 107 (130)
T PF00781_consen 74 LMGSDREDKPPLGIIPAGTG---NDFARSLGIPSDPE 107 (130)
T ss_dssp HCTSTSSS--EEEEEE-SSS----HHHHHTT--SSHH
T ss_pred HhhcCCCccceEEEecCCCh---hHHHHHcCCCCCcH
Confidence 655554 3433444433 46778888776664
No 125
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.66 E-value=2.5e+02 Score=22.22 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=41.0
Q ss_pred HHHHHHHhCCc-eEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH---CCCcEEEEeCCCCcHH
Q 013791 47 LYFGSLTSRGF-QLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD---SGHDLIVAADSNASDL 122 (436)
Q Consensus 47 ~f~~~L~~rGf-~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd---~GGNiLi~~~~~~~~~ 122 (436)
.+.+.|+..|+ ++... .+.+-.+.......+|.+++=-.-.+ .+...+.+.+. .+..+++.++....+.
T Consensus 13 ~l~~~l~~~~~~~v~~~--~~~~~~~~~~~~~~~d~iiid~~~~~-----~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~ 85 (112)
T PF00072_consen 13 LLEKLLERAGYEEVTTA--SSGEEALELLKKHPPDLIIIDLELPD-----GDGLELLEQIRQINPSIPIIVVTDEDDSDE 85 (112)
T ss_dssp HHHHHHHHTTEEEEEEE--SSHHHHHHHHHHSTESEEEEESSSSS-----SBHHHHHHHHHHHTTTSEEEEEESSTSHHH
T ss_pred HHHHHHHhCCCCEEEEE--CCHHHHHHHhcccCceEEEEEeeecc-----ccccccccccccccccccEEEecCCCCHHH
Confidence 45566678999 77643 22222233334444687666422211 23333333332 4567777776655555
Q ss_pred HHHHHHHcCce
Q 013791 123 IREVATECGVD 133 (436)
Q Consensus 123 lr~ll~ElGI~ 133 (436)
....+ ++|+.
T Consensus 86 ~~~~~-~~g~~ 95 (112)
T PF00072_consen 86 VQEAL-RAGAD 95 (112)
T ss_dssp HHHHH-HTTES
T ss_pred HHHHH-HCCCC
Confidence 55544 77753
No 126
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=24.09 E-value=3.3e+02 Score=23.66 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=47.7
Q ss_pred CeEEEEEcCcccccc-hhHHHHHHHhCCceEEEecCCCCCccccccc-cccc-CEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 30 RRVLVLVDDFAIKSS-HSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLY-DALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~-~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~g-e~~y-d~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
.|||+++-+...+.. -....+.|.+.||+|.-. + .+.|.... +..| +| +.+ -.-+.|.+|+.
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~--k--~~~ls~~~a~~~y~~~------~~k-----~~~~~l~~~m~ 65 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVAL--K--MLQLTEELAEEHYAEH------KGK-----PFFPELVEFMT 65 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEe--e--eccCCHHHHHHHhhhh------cCC-----chHHHHHHHHh
Confidence 489999977766433 357899999999999853 0 11222111 1222 22 111 23478999999
Q ss_pred CCCcEEEEeC-CCCcHHHHHHH
Q 013791 107 SGHDLIVAAD-SNASDLIREVA 127 (436)
Q Consensus 107 ~GGNiLi~~~-~~~~~~lr~ll 127 (436)
.|.-+.+... .+.-+.+|.+.
T Consensus 66 sgp~~al~l~~~nav~~~r~l~ 87 (130)
T cd04413 66 SGPVVAMVLEGENAVKTVRKLM 87 (130)
T ss_pred cCCEEEEEEeCCcHHHHHHHHh
Confidence 8876654443 32223344443
No 127
>PRK08105 flavodoxin; Provisional
Probab=24.05 E-value=2.7e+02 Score=24.76 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=54.0
Q ss_pred CeEEEEEcCc-cc-ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCC-CCCCHHHHHHHHH
Q 013791 30 RRVLVLVDDF-AI-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFG-GSIDVASIVDFVD 106 (436)
Q Consensus 30 ~r~LVl~d~~-~~-~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~-~~l~~~~L~~Fvd 106 (436)
+|++|+|-.. +. +.-=..+.+.|+++|+++.....++. .....+.++++|+..++.- -| .+-+.+.+.+.++
T Consensus 2 ~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~----~~~~~~~~~~vi~~~sT~G-~Ge~p~~~~~f~~~l~ 76 (149)
T PRK08105 2 AKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPEL----SDWQPYQDELVLVVTSTTG-QGDLPDSIVPLFQALK 76 (149)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhC----CchhcccCCeEEEEECCCC-CCCCChhHHHHHHHHH
Confidence 3678888553 22 23334577888899999986643332 1222233578888877652 22 1123345555555
Q ss_pred CC-----C-cEEEEe--CCC------CcHHHHHHHHHcCceecC
Q 013791 107 SG-----H-DLIVAA--DSN------ASDLIREVATECGVDFDE 136 (436)
Q Consensus 107 ~G-----G-NiLi~~--~~~------~~~~lr~ll~ElGI~~~~ 136 (436)
+. | +.-|.+ ++. ....+...++++|-..--
T Consensus 77 ~~~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 77 DTAGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred hcCcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 42 1 222322 221 135566777777765543
No 128
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=24.02 E-value=2.8e+02 Score=24.07 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=33.1
Q ss_pred EEEcCcccccchhHHHHHHHhCCceEEEecCCCCC-------cccc---cc---cccccCEEEEeCC
Q 013791 34 VLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-------IGLQ---RY---GQYLYDALVLFCP 87 (436)
Q Consensus 34 Vl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~-------~~L~---~~---ge~~yd~LII~~p 87 (436)
+++-+.-....+....+-|+..||++.+..++... +.+. .. ....||.|||...
T Consensus 3 il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg 69 (163)
T cd03135 3 VILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGG 69 (163)
T ss_pred EEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCC
Confidence 34433335566778888999999999986654322 1221 11 1247899888654
No 129
>PF15260 FAM219A: Protein family FAM219A
Probab=23.68 E-value=55 Score=28.72 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=29.9
Q ss_pred cCCCCCCeE-EEEEcCccccc----ch-----------hHHHHHHHhCCceEEEecCCCCCcccc
Q 013791 24 PENPTDRRV-LVLVDDFAIKS----SH-----------SLYFGSLTSRGFQLEFKLADDPNIGLQ 72 (436)
Q Consensus 24 ~~~~~~~r~-LVl~d~~~~~~----~~-----------S~f~~~L~~rGf~v~~~~~~d~~~~L~ 72 (436)
|.+.+++.. ||=+|...+.+ .| ..+...|-.-||.++. +|+|++|.|.
T Consensus 41 al~qs~de~pLVSLDSDSd~e~~~s~~sssg~ssaq~~q~l~~QLlkDGy~LDE-~pDdEdLDLI 104 (125)
T PF15260_consen 41 ALSQSPDENPLVSLDSDSDEELEMSRYSSSGYSSAQVNQDLSQQLLKDGYRLDE-IPDDEDLDLI 104 (125)
T ss_pred ccccCcccCcccccccCchhhhhhhhcccccccHHHHhHHHHHHHHhccccccc-CCchhccccC
Confidence 334445555 99998654421 12 2356677789999986 5888855543
No 130
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=23.45 E-value=2.7e+02 Score=24.06 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=46.0
Q ss_pred cchhHHHHHHHhCCceEEEecC-------CCCCcccc-----cccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCc
Q 013791 43 SSHSLYFGSLTSRGFQLEFKLA-------DDPNIGLQ-----RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHD 110 (436)
Q Consensus 43 ~~~S~f~~~L~~rGf~v~~~~~-------~d~~~~L~-----~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGN 110 (436)
+....|.+.|++.|+++..... +..+..|. .--...+|.+||++.-.+ |.+ -.+.|++ .|-+
T Consensus 52 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~D-f~~--~i~~lr~---~G~~ 125 (149)
T cd06167 52 ERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSD-FVP--LVERLRE---LGKR 125 (149)
T ss_pred hhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCcc-HHH--HHHHHHH---cCCE
Confidence 4567899999999999975432 12222221 111226789888888665 422 2244444 4777
Q ss_pred EEEEeCC-CCcHHHHHHH
Q 013791 111 LIVAADS-NASDLIREVA 127 (436)
Q Consensus 111 iLi~~~~-~~~~~lr~ll 127 (436)
+.+++.+ ..+..++..+
T Consensus 126 V~v~~~~~~~s~~L~~~~ 143 (149)
T cd06167 126 VIVVGFEAKTSRELRKAA 143 (149)
T ss_pred EEEEccCccChHHHHHhC
Confidence 7777665 4455554443
No 131
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=23.21 E-value=5.5e+02 Score=29.06 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHCCC-----cEEEEeCCCC---cHHHHHHHHHcCcee
Q 013791 96 IDVASIVDFVDSGH-----DLIVAADSNA---SDLIREVATECGVDF 134 (436)
Q Consensus 96 l~~~~L~~Fvd~GG-----NiLi~~~~~~---~~~lr~ll~ElGI~~ 134 (436)
++.++|.+++..|+ -|+++-|.+- -+.+-++|+++|+..
T Consensus 89 ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpA 135 (671)
T PRK14582 89 VSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPA 135 (671)
T ss_pred ccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCE
Confidence 56677777777653 2667777653 245668999998853
No 132
>PF15020 CATSPERD: Cation channel sperm-associated protein subunit delta
Probab=23.13 E-value=1.6e+02 Score=33.38 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=34.6
Q ss_pred EEecCCceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcccc
Q 013791 364 EFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEYER 406 (436)
Q Consensus 364 ~f~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey~R 406 (436)
...-|++-|+|.|+|.---|-|||-+.+++.+|+- |-.+||
T Consensus 643 ~ii~~~~~g~YvF~~~ivDP~YSyC~L~t~Fai~v--~G~~P~ 683 (733)
T PF15020_consen 643 HIIWPQRNGIYVFRVKIVDPYYSYCNLTTIFAIYV--YGAIPR 683 (733)
T ss_pred eEEcCCCCeEEEEEEEEeCCCCCccceEEEEEEEE--eccCCc
Confidence 55567999999999999999999999999999974 334454
No 133
>PF15284 PAGK: Phage-encoded virulence factor
Probab=22.78 E-value=60 Score=25.01 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=16.1
Q ss_pred ChhhhHHHHHHHHHhhhhccccc--cCCCCCC
Q 013791 1 MAKLLLYLTLATSLIPLFSVAFS--PENPTDR 30 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 30 (436)
|+.--.+.+.++|+|+.+++|++ |++.++.
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasamAa~~~~~ 32 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAMAADSSPH 32 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHHhhCCC
Confidence 44333344444567777777776 4444443
No 134
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.73 E-value=1.3e+02 Score=27.68 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=38.7
Q ss_pred HHHHHHHhCCceEEEecCCCCCccc--c----cccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-CCCcEEEEe-CCC
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNIGL--Q----RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-SGHDLIVAA-DSN 118 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~~L--~----~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd-~GGNiLi~~-~~~ 118 (436)
+|.+.|.+.||+.-.. ..+.++.| . -| .+.+|+++|++.-++ | ..|.+-+. .|-.+.+.+ ++.
T Consensus 70 ~l~~~l~~~Gf~pv~~-kG~~Dv~laIDame~~~-~~~iD~~vLvSgD~D-F------~~Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 70 KLIEAVVNQGFEPIIV-AGDVDVRMAVEAMELIY-NPNIDAVALVTRDAD-F------LPVINKAKENGKETIVIGAEPG 140 (160)
T ss_pred HHHHHHHHCCceEEEe-cCcccHHHHHHHHHHhc-cCCCCEEEEEeccHh-H------HHHHHHHHHCCCEEEEEeCCCC
Confidence 4666777788875421 11222222 1 12 256788888777655 4 22333333 355666666 344
Q ss_pred CcHHHHHHHHH
Q 013791 119 ASDLIREVATE 129 (436)
Q Consensus 119 ~~~~lr~ll~E 129 (436)
.++.++.-+.+
T Consensus 141 ts~~L~~acd~ 151 (160)
T TIGR00288 141 FSTALQNSADI 151 (160)
T ss_pred ChHHHHHhcCe
Confidence 56666554443
No 135
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=22.55 E-value=2.4e+02 Score=25.41 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=47.9
Q ss_pred CeEEEEEcCccccc-chhHHHHHHHhCCceEEEecCCCCCccccccc-cccc-CEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 30 RRVLVLVDDFAIKS-SHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLY-DALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 30 ~r~LVl~d~~~~~~-~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~g-e~~y-d~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
.||||++-+.+.+. .-....+.+++.||+|.-. + .+.|.+.. +..| +| +.+ ---+.|++|+-
T Consensus 3 e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~--k--~~~lt~~~a~~fY~~~------~gk-----~ff~~Lv~~m~ 67 (149)
T PTZ00093 3 ERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVAL--K--MLQPTPEIAEEHYKEH------KGK-----PFFPGLVKYIS 67 (149)
T ss_pred ceEEEEECcchhhcCchHHHHHHHHHCCCEEEEe--E--eecCCHHHHHHHHHHh------cCC-----chHHHHHHHHh
Confidence 69999997766643 3367899999999999853 0 11222111 1222 11 111 23478999998
Q ss_pred CCCcEEEEeC-CCCcHHHHHHH
Q 013791 107 SGHDLIVAAD-SNASDLIREVA 127 (436)
Q Consensus 107 ~GGNiLi~~~-~~~~~~lr~ll 127 (436)
.|--+.+... .+.-+.+|.++
T Consensus 68 sGp~val~l~g~nav~~~R~l~ 89 (149)
T PTZ00093 68 SGPVVCMVWEGKNVVKQGRKLL 89 (149)
T ss_pred cCCEEEEEEeCCCHHHHHHHHh
Confidence 8876654443 32223445444
No 136
>PRK11914 diacylglycerol kinase; Reviewed
Probab=22.54 E-value=1.4e+02 Score=29.55 Aligned_cols=96 Identities=17% Similarity=0.102 Sum_probs=54.3
Q ss_pred CCeEEEEEcCcccc----cchhHHHHHHHhCCceEEEecCCCC--Ccccc-cccccccCEEEEeCCCCCcCCCCCCHHHH
Q 013791 29 DRRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLADDP--NIGLQ-RYGQYLYDALVLFCPSVERFGGSIDVASI 101 (436)
Q Consensus 29 ~~r~LVl~d~~~~~----~~~S~f~~~L~~rGf~v~~~~~~d~--~~~L~-~~ge~~yd~LII~~p~~~~~~~~l~~~~L 101 (436)
-+|+++++...+-+ ....+..+.|+++|++++....... ...+. +.-+..+|.||+.. |+-+....
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~G-------GDGTi~ev 80 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVG-------GDGVISNA 80 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEEC-------CchHHHHH
Confidence 36889999876433 3455677789999998774322211 11122 22234568777643 44577666
Q ss_pred HHHHHCCCcEEEEeCCCCcHHHHHHHHHcCcee
Q 013791 102 VDFVDSGHDLIVAADSNASDLIREVATECGVDF 134 (436)
Q Consensus 102 ~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~ 134 (436)
.+-+..-+--|-..+.++ -+.|++++|+..
T Consensus 81 v~~l~~~~~~lgiiP~GT---~NdfAr~lg~~~ 110 (306)
T PRK11914 81 LQVLAGTDIPLGIIPAGT---GNDHAREFGIPT 110 (306)
T ss_pred hHHhccCCCcEEEEeCCC---cchhHHHcCCCC
Confidence 665543232232233333 357788888854
No 137
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=22.53 E-value=2.6e+02 Score=27.23 Aligned_cols=70 Identities=9% Similarity=0.008 Sum_probs=45.4
Q ss_pred HHHHHHHhCCceEEEecCCCCC------cccccccccccCEEEEeCCCCCcCCCCCC-H-HHHHHHHHCCCcEEEEeCC
Q 013791 47 LYFGSLTSRGFQLEFKLADDPN------IGLQRYGQYLYDALVLFCPSVERFGGSID-V-ASIVDFVDSGHDLIVAADS 117 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~------~~L~~~ge~~yd~LII~~p~~~~~~~~l~-~-~~L~~Fvd~GGNiLi~~~~ 117 (436)
.|.+.|+++|++|-+.+-.++. -.|.+.|.+-|++|++-++..+ -...+. . +...+-+++|=+|....+.
T Consensus 127 ~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~-~~~~~~yKs~~R~~l~~~GYrIv~~iGD 204 (229)
T TIGR01675 127 KLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDS-NKTVVTYKSEVRKSLMEEGYRIWGNIGD 204 (229)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCC-CchHhHHHHHHHHHHHhCCceEEEEECC
Confidence 3788999999999886655542 2367889888899988764322 111111 2 3344666677888866543
No 138
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=22.47 E-value=2.4e+02 Score=31.03 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=46.3
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC-------CH
Q 013791 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI-------DV 98 (436)
Q Consensus 26 ~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l-------~~ 98 (436)
|.+.++.++++|--. .+.-...+.|+.+|+++......+ ....+|.|||-.+.. ++... -.
T Consensus 2 ~~~~~~~i~iiDyG~--GN~~sl~~al~~~G~~v~~v~~~~--------~l~~~D~lIlpG~gs--~~~~m~~L~~~gl~ 69 (538)
T PLN02617 2 SNSADSEVTLLDYGA--GNVRSVRNAIRHLGFTIKDVQTPE--------DILNADRLIFPGVGA--FGSAMDVLNNRGMA 69 (538)
T ss_pred CCCCCCeEEEEECCC--CCHHHHHHHHHHCCCeEEEECChh--------hhccCCEEEECCCCC--HHHHHHHHHHcCHH
Confidence 445678888998642 233456788999999997653211 124568877733222 21110 13
Q ss_pred HHHHHHHHCCCcEE
Q 013791 99 ASIVDFVDSGHDLI 112 (436)
Q Consensus 99 ~~L~~Fvd~GGNiL 112 (436)
+.|.+|++.|.-+|
T Consensus 70 ~~i~~~i~~g~PvL 83 (538)
T PLN02617 70 EALREYIQNDRPFL 83 (538)
T ss_pred HHHHHHHHcCCCEE
Confidence 67999999888777
No 139
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=22.29 E-value=5e+02 Score=26.16 Aligned_cols=80 Identities=10% Similarity=0.196 Sum_probs=37.2
Q ss_pred CCCeEEEEEcCccc---ccchhHHHHHHHhCCceEEEecCCCCCcc-----cccccccccCEEEEeCCCCCcCCCCCCHH
Q 013791 28 TDRRVLVLVDDFAI---KSSHSLYFGSLTSRGFQLEFKLADDPNIG-----LQRYGQYLYDALVLFCPSVERFGGSIDVA 99 (436)
Q Consensus 28 ~~~r~LVl~d~~~~---~~~~S~f~~~L~~rGf~v~~~~~~d~~~~-----L~~~ge~~yd~LII~~p~~~~~~~~l~~~ 99 (436)
++.++-++.-.... ..-..-.-+..++.|+++.+..+.+.+.. +...-....|.|||.+...+. -..
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~a-----l~~ 96 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDG-----LCP 96 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-----HHH
Confidence 45566566533322 12222344556677888876544332211 122334456776665432221 124
Q ss_pred HHHHHHHCCCcEE
Q 013791 100 SIVDFVDSGHDLI 112 (436)
Q Consensus 100 ~L~~Fvd~GGNiL 112 (436)
.|.+..+.|--++
T Consensus 97 ~l~~a~~~gIpVV 109 (336)
T PRK15408 97 ALKRAMQRGVKVL 109 (336)
T ss_pred HHHHHHHCCCeEE
Confidence 4555555554443
No 140
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.96 E-value=2e+02 Score=25.31 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=45.8
Q ss_pred HHHHHHhCCceEEEecCCCCCcc-cccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-CC-cEEEEeCCCCcHHHH
Q 013791 48 YFGSLTSRGFQLEFKLADDPNIG-LQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-GH-DLIVAADSNASDLIR 124 (436)
Q Consensus 48 f~~~L~~rGf~v~~~~~~d~~~~-L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~-GG-NiLi~~~~~~~~~lr 124 (436)
....|+..||+|.....+.+.-. ...--+...|.++|-+-..... -..+.+.+-+++ |- ++.+..+-..++.-.
T Consensus 22 v~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~---~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~ 98 (132)
T TIGR00640 22 IATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHL---TLVPALRKELDKLGRPDILVVVGGVIPPQDF 98 (132)
T ss_pred HHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhH---HHHHHHHHHHHhcCCCCCEEEEeCCCChHhH
Confidence 45568899999987644432111 2222234457766644433322 124666666665 43 565555533344445
Q ss_pred HHHHHcCce
Q 013791 125 EVATECGVD 133 (436)
Q Consensus 125 ~ll~ElGI~ 133 (436)
.-+.++||.
T Consensus 99 ~~l~~~Gvd 107 (132)
T TIGR00640 99 DELKEMGVA 107 (132)
T ss_pred HHHHHCCCC
Confidence 668899984
No 141
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=21.90 E-value=3e+02 Score=27.93 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=31.1
Q ss_pred CEEEEeCCCCCcCCCCCCHHHHHHHHH-C---CCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 013791 80 DALVLFCPSVERFGGSIDVASIVDFVD-S---GHDLIVAADSNASDLIREVATECGVDFDED 137 (436)
Q Consensus 80 d~LII~~p~~~~~~~~l~~~~L~~Fvd-~---GGNiLi~~~~~~~~~lr~ll~ElGI~~~~~ 137 (436)
|-+++...+..-+.++.-...+.+++- + +|. |+.+...+..+..+++++|+++..-
T Consensus 186 DRl~~vd~~G~~l~~d~~~al~~~~l~~~~~~~~~--vv~~v~ss~~i~~ia~~~g~~v~~t 245 (355)
T cd03084 186 DRLIVVDENGGFLDGDELLALLAVELFLTFNPRGG--VVKTVVSSGALDKVAKKLGIKVIRT 245 (355)
T ss_pred ceeEEECCCCceeCHhHHHHHHHHHHHHhcCCCCC--EEEEccchHHHHHHHHHcCCcEEEe
Confidence 555555554433322111123344443 2 444 4455556678999999999877663
No 142
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=21.88 E-value=2.5e+02 Score=24.47 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=47.7
Q ss_pred CeEEEEEcCcccccc-hhHHHHHHHhCCceEEEecCCCCCccccccc-ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013791 30 RRVLVLVDDFAIKSS-HSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~-~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~g-e~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~ 107 (436)
.|||+++-+...... -....+.|++.||++.-. ..+.|.... +..|. .. + +.-.-+.|.+|+..
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~----k~~~lt~~~a~~~y~------~~-~---~~~~~~~lv~~m~s 66 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAM----KMLQLTEELAEEFYA------EH-K---GKPFFNDLVEFMTS 66 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEE----eeecCCHHHHHHHHH------Hh-c---CCchHHHHHHHhhc
Confidence 479999977766433 367999999999999853 011222111 11221 00 1 11234779999988
Q ss_pred CCcEEEEe-CCCCcHHHHHHH
Q 013791 108 GHDLIVAA-DSNASDLIREVA 127 (436)
Q Consensus 108 GGNiLi~~-~~~~~~~lr~ll 127 (436)
|--+.+.. +.+.-+.+|.++
T Consensus 67 gp~~~l~l~g~nav~~~r~l~ 87 (135)
T smart00562 67 GPVVAMVLEGEDAVKTWRTLM 87 (135)
T ss_pred CCeEEEEEecCCHHHHHHHHh
Confidence 87655444 333334455554
No 143
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=21.87 E-value=2.9e+02 Score=24.35 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=45.4
Q ss_pred CeEEEEEcCc--ccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013791 30 RRVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (436)
Q Consensus 30 ~r~LVl~d~~--~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~ 107 (436)
.|+++++.+. +.+.-=....+.|..+|++++.....+....+ ...||++++-.|... . +.+. ..+.+|++.
T Consensus 2 ~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~~----~~~~d~~~~g~~t~~-~-ge~~-~~~~~f~~~ 74 (151)
T COG0716 2 MKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDL----LESYDELLLGTPTWG-A-GELP-DDWYDFIEE 74 (151)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchhh----hccCCEEEEEeCCCC-C-CcCC-ccHHHHHHH
Confidence 4678888664 23334446888899999999654333221111 135688777776543 2 3355 788888877
Q ss_pred CCc
Q 013791 108 GHD 110 (436)
Q Consensus 108 GGN 110 (436)
+.+
T Consensus 75 ~~~ 77 (151)
T COG0716 75 LEP 77 (151)
T ss_pred hcc
Confidence 655
No 144
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=21.82 E-value=2.2e+02 Score=28.93 Aligned_cols=79 Identities=19% Similarity=0.121 Sum_probs=47.1
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCH-------HHHH
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDV-------ASIV 102 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~-------~~L~ 102 (436)
+.-+.++|.... .-..-...|+..+-+-...-.+ ++....+..||.+|-.||=.+.. .++. ..=.
T Consensus 182 ~~~vtmvDvn~~--Av~~ar~Nl~~N~~~~~~v~~s----~~~~~v~~kfd~IisNPPfh~G~--~v~~~~~~~~i~~A~ 253 (300)
T COG2813 182 QAKLTLVDVNAR--AVESARKNLAANGVENTEVWAS----NLYEPVEGKFDLIISNPPFHAGK--AVVHSLAQEIIAAAA 253 (300)
T ss_pred CCeEEEEecCHH--HHHHHHHhHHHcCCCccEEEEe----cccccccccccEEEeCCCccCCc--chhHHHHHHHHHHHH
Confidence 556777776421 1112344566555554211111 34555556899999999977633 3444 3345
Q ss_pred HHHHCCCcEEEEeC
Q 013791 103 DFVDSGHDLIVAAD 116 (436)
Q Consensus 103 ~Fvd~GGNiLi~~~ 116 (436)
+++..||.+.|.+.
T Consensus 254 ~~L~~gGeL~iVan 267 (300)
T COG2813 254 RHLKPGGELWIVAN 267 (300)
T ss_pred HhhccCCEEEEEEc
Confidence 78999999998887
No 145
>PRK03094 hypothetical protein; Provisional
Probab=21.76 E-value=1.7e+02 Score=23.85 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=27.6
Q ss_pred ccchhHHHHHHHhCCceEEEe-cCCCCCcccccccccccCEEEEeCCCCC
Q 013791 42 KSSHSLYFGSLTSRGFQLEFK-LADDPNIGLQRYGQYLYDALVLFCPSVE 90 (436)
Q Consensus 42 ~~~~S~f~~~L~~rGf~v~~~-~~~d~~~~L~~~ge~~yd~LII~~p~~~ 90 (436)
.+..|..-+.|+++||+|... .++| ...+|.+|+-.-...
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l~~~~~---------~~~~Da~VitG~d~n 47 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQLRSEQD---------AQGCDCCVVTGQDSN 47 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEecCcccc---------cCCcCEEEEeCCCcc
Confidence 456778899999999999743 1111 345689888665544
No 146
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=21.72 E-value=5.7e+02 Score=22.68 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=46.7
Q ss_pred CeEEEEEcCcccc-cchhHHHHHHHhCCceEEEecCCCCCcccccc-ccccc-CEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 30 RRVLVLVDDFAIK-SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRY-GQYLY-DALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 30 ~r~LVl~d~~~~~-~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~-ge~~y-d~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
.|||+++-+.+.+ ..-....+.++++||.|.-. + ...|.+. -+..| +| +.+ ---+.|.+|+-
T Consensus 2 e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~--k--~~~lt~e~a~~~Y~~~------~~k-----~ff~~Lv~~m~ 66 (140)
T PRK14541 2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAM--K--KTRLTKETAGEFYAVH------RER-----PFYGELVEFMS 66 (140)
T ss_pred ceEEEEECcchhhcCchHHHHHHHHHCCCEEEEe--e--eecCCHHHHHHHHHHH------cCC-----ccHHHHHHHHh
Confidence 5899999776664 33468999999999999853 0 1111110 11222 11 112 12477999998
Q ss_pred CCCcEEEEe-CCCCcHHHHHHH
Q 013791 107 SGHDLIVAA-DSNASDLIREVA 127 (436)
Q Consensus 107 ~GGNiLi~~-~~~~~~~lr~ll 127 (436)
.|--+.+.. +...-+.+|.++
T Consensus 67 sgp~va~~l~g~nav~~~R~l~ 88 (140)
T PRK14541 67 SGPCVPMILEKENAVADFRTLI 88 (140)
T ss_pred cCCeEEEEEecCcHHHHHHHHh
Confidence 776544333 333333445544
No 147
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=21.49 E-value=96 Score=28.61 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.1
Q ss_pred eCCceEEEEEEEEEeCCeeeec
Q 013791 312 INDDLEYSVEIYEWSGTSWEPY 333 (436)
Q Consensus 312 i~d~v~y~i~i~e~~~~~W~P~ 333 (436)
-+|-|..++.+..|+.|.|+|=
T Consensus 58 P~DrI~~~~~~~~~eRG~W~PT 79 (164)
T smart00675 58 PTDRISARVSVMHFERGTWQPT 79 (164)
T ss_pred CCCeEEEEEEEEEecCCeeeee
Confidence 3789999999999999999993
No 148
>PHA02692 hypothetical protein; Provisional
Probab=21.46 E-value=30 Score=27.37 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=25.6
Q ss_pred ecCCCCCcccccccCCcchhhHHHH-HHHHHhhheeeeec
Q 013791 396 VRPYRHNEYERFLPAAYPYYGSAFS-MMAGFFIFTIVHLY 434 (436)
Q Consensus 396 VR~~~hdey~Rfi~~a~pyy~s~~s-~~~g~~~F~~~~L~ 434 (436)
||..--|+++-..++.++|+.-++. .+++.++-.+.|||
T Consensus 27 VksVLtDk~~~~~~~~~~~~~~ii~~~~~~~~~vll~flY 66 (70)
T PHA02692 27 VRTVMTEKPACDRSKGVPWTTVFLIGLIAAAIGVLLCFHY 66 (70)
T ss_pred HHHHHcCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4454557777678899999988887 55444444444444
No 149
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=21.17 E-value=1.8e+02 Score=25.29 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=33.0
Q ss_pred eeccccCCCceEEEEEecCCceeeeEEEEeeeeccceeeeee
Q 013791 350 LKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQRLGYTSLSLS 391 (436)
Q Consensus 350 R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t~l~~~ 391 (436)
++.|++..+|.|.+..+.| .-|.+..+|+.++.|=.+-.++
T Consensus 103 ~~~l~~~~~g~y~~~~~~~-~~G~W~l~l~~~~~~~~~~~~~ 143 (146)
T PF05751_consen 103 TLTLTESAPGVYRAPVPLL-KKGRWYLRLDWEPGDKSWRLEQ 143 (146)
T ss_pred eEEeeECCCceEEEEcCCC-CCccEEEEEEEecCCCeEEEEE
Confidence 4556677899999999999 8999999998888776665444
No 150
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=21.01 E-value=5.3e+02 Score=25.45 Aligned_cols=97 Identities=21% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCC--CcCCC------CCC--H
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV--ERFGG------SID--V 98 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~--~~~~~------~l~--~ 98 (436)
..|++|+.-+- ...++ .....|+..|+++......+.. .. ......||.|||-..-. +.+.. .+. .
T Consensus 3 ~~kvaVl~~pG-~n~d~-e~~~Al~~aG~~v~~v~~~~~~-~~-~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l 78 (261)
T PRK01175 3 SIRVAVLRMEG-TNCED-ETVKAFRRLGVEPEYVHINDLA-AE-RKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVL 78 (261)
T ss_pred CCEEEEEeCCC-CCCHH-HHHHHHHHCCCcEEEEeecccc-cc-ccchhhCCEEEECCCCCcccccccchhhHHHHHHHH
Confidence 35778887542 22223 3468899999999876544320 10 11234579988876521 32211 111 1
Q ss_pred -HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceec
Q 013791 99 -ASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFD 135 (436)
Q Consensus 99 -~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~ 135 (436)
+.|++|+++|+=+|=.. ... .+|.+.|+=+.
T Consensus 79 ~~~Ik~f~~~gkpVLGIC-----nG~-QlLa~~GlLpg 110 (261)
T PRK01175 79 RKDIEEFIDEGYPIIGIC-----NGF-QVLVELGLLPG 110 (261)
T ss_pred HHHHHHHHHCCCeEEEEC-----HHH-HHHHHCCCCCC
Confidence 56799999877455221 233 47777887754
No 151
>PRK08114 cystathionine beta-lyase; Provisional
Probab=20.89 E-value=2.4e+02 Score=29.63 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=50.9
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
..|+++++- +......+.-+.+.|+..|-++.+..+.|.. .+.+.-.+....+.+=.|+.. .+.-.+.+.|.+...
T Consensus 99 ~~GD~Vv~~--~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~-~l~~~l~~~TrlV~~EtpsNp-~~~v~DI~~Ia~ia~ 174 (395)
T PRK08114 99 EQGDHVLMT--GTAYEPTQDFCSKILSKLGVTTTWFDPLIGA-DIAKLIQPNTKVVFLESPGSI-TMEVHDVPAIVAAVR 174 (395)
T ss_pred CCCCEEEEe--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHH-HHHHhcCCCceEEEEECCCCC-CCEeecHHHHHHHHH
Confidence 457775543 3334455555556788899999987654421 122111122334444444444 434466788888887
Q ss_pred CCC-cEEEEeCCCC
Q 013791 107 SGH-DLIVAADSNA 119 (436)
Q Consensus 107 ~GG-NiLi~~~~~~ 119 (436)
+-| ++++..|...
T Consensus 175 ~~g~g~~lvVDnT~ 188 (395)
T PRK08114 175 SVNPDAVIMIDNTW 188 (395)
T ss_pred HhCCCCEEEEECCC
Confidence 754 6777777654
No 152
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=20.75 E-value=4.2e+02 Score=23.23 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=31.7
Q ss_pred EEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCC---CcHHHHHHHHHcCceecCC
Q 013791 81 ALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSN---ASDLIREVATECGVDFDED 137 (436)
Q Consensus 81 ~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~---~~~~lr~ll~ElGI~~~~~ 137 (436)
.||+..+ .+ + -....+...+++.|.++-...+. ...-++..+++.|+.++++
T Consensus 93 ~lii~~~-~~-~---~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~ 147 (172)
T PF06144_consen 93 ILIIFSE-EK-L---DKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPD 147 (172)
T ss_dssp EEEEEES--S------HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HH
T ss_pred EEEEEeC-Cc-h---hhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 5666666 22 2 13466899999888776444332 3567889999999999986
No 153
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=20.74 E-value=3.9e+02 Score=25.27 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=48.2
Q ss_pred HHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEE-EEeCCCCcHHHHH
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI-VAADSNASDLIRE 125 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiL-i~~~~~~~~~lr~ 125 (436)
.+.+.|+++|+++.....+...+.....-...||.|||.+.....--...+.+.+.+.++++--|| |-. +...
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~------G~Ql 88 (214)
T PRK07765 15 NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCL------GHQA 88 (214)
T ss_pred HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEcc------CHHH
Confidence 477789999999988655432111111112358999887543221101234466777777776666 332 4556
Q ss_pred HHHHcCceecC
Q 013791 126 VATECGVDFDE 136 (436)
Q Consensus 126 ll~ElGI~~~~ 136 (436)
++..+|-.+..
T Consensus 89 la~a~GG~v~~ 99 (214)
T PRK07765 89 IGVAFGATVDR 99 (214)
T ss_pred HHHHhCCEEee
Confidence 77777766553
No 154
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.64 E-value=5.9e+02 Score=22.45 Aligned_cols=100 Identities=10% Similarity=0.063 Sum_probs=56.2
Q ss_pred eEEEEEcCc-c-cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCC-CCCCHHHHHHHHHC
Q 013791 31 RVLVLVDDF-A-IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFG-GSIDVASIVDFVDS 107 (436)
Q Consensus 31 r~LVl~d~~-~-~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~-~~l~~~~L~~Fvd~ 107 (436)
+++|++-.. + .+.-=..+.+.|+.+|++++.....+ +.. -+.+|.||+..|+.- -| .+-+.+.+.+.+++
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~----~~~--l~~~~~li~~~sT~G-~Ge~p~~~~~f~~~L~~ 75 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL----LDD--LSASGLWLIVTSTHG-AGDLPDNLQPFFEELQE 75 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC----HHH--hccCCeEEEEECCCC-CCCCChhHHHHHHHHHh
Confidence 677887443 2 23333457788889999988653222 111 234588888888762 11 11233445554543
Q ss_pred ------CCcEEEEe-CCC-------CcHHHHHHHHHcCceecCC
Q 013791 108 ------GHDLIVAA-DSN-------ASDLIREVATECGVDFDED 137 (436)
Q Consensus 108 ------GGNiLi~~-~~~-------~~~~lr~ll~ElGI~~~~~ 137 (436)
|-+.-|.+ +.. ....+...++++|-..--.
T Consensus 76 ~~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 119 (146)
T PRK09004 76 QKPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGE 119 (146)
T ss_pred cCCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeec
Confidence 22333433 222 1467888999998876643
No 155
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=20.57 E-value=3.8e+02 Score=28.22 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=31.4
Q ss_pred CEEEEeCCCCCcCCCCCCHHHHHHHHHC----CCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 013791 80 DALVLFCPSVERFGGSIDVASIVDFVDS----GHDLIVAADSNASDLIREVATECGVDFDED 137 (436)
Q Consensus 80 d~LII~~p~~~~~~~~l~~~~L~~Fvd~----GGNiLi~~~~~~~~~lr~ll~ElGI~~~~~ 137 (436)
|-+.+.+++...++++.-...+.+|+-+ +|. |+.+-..+..+..+++++|+++..-
T Consensus 245 DR~~ivd~~G~~i~~d~~~al~a~~ll~~~~~~~~--vv~~v~ss~~i~~ia~~~g~~v~~t 304 (445)
T cd05803 245 DRLALVDEDGRPIGEEYTLALAVDYVLKYGGRKGP--VVVNLSTSRALEDIARKHGVPVFRS 304 (445)
T ss_pred ceEEEECCCCCCcChHHHHHHHHHHHHHhcCCCCC--EEEeccchHHHHHHHHHcCCEEEEe
Confidence 4444444444433221111234455432 454 3455556778999999999988763
No 156
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=20.39 E-value=4.8e+02 Score=22.29 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=25.6
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEe
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFK 62 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~ 62 (436)
.+|.|||.-+......|....+.|+++-..+..+
T Consensus 9 ~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR 42 (118)
T PF13778_consen 9 KNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER 42 (118)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHhhhhccccC
Confidence 5788888876666677788888888876666655
No 157
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=20.33 E-value=4.8e+02 Score=25.37 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=59.9
Q ss_pred CCCeEEEEEcC-cccccchhHHHHHHHhCCceEEEecCCCCCcc--cccccccccC-----EEEEeCCCCCcCCCCCCH-
Q 013791 28 TDRRVLVLVDD-FAIKSSHSLYFGSLTSRGFQLEFKLADDPNIG--LQRYGQYLYD-----ALVLFCPSVERFGGSIDV- 98 (436)
Q Consensus 28 ~~~r~LVl~d~-~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~--L~~~ge~~yd-----~LII~~p~~~~~~~~l~~- 98 (436)
.|+++.+|..+ +..-..++...+.|++.|.+++.. |.=.+++ ..+.|.+..+ .+.+.+...+.- ..+.
T Consensus 91 ~g~~Vvvl~~GDP~~ys~~~~l~~~l~~~~~~veii-PGISS~~aaaA~lg~pl~~~~~~~~~~i~s~h~~~~--~~~~~ 167 (263)
T PLN02625 91 AGKTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVV-PGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREG--GTDPL 167 (263)
T ss_pred CCCeEEEEcCCCchhhhhHHHHHHHHHHCCCCEEEE-CCccHHHHHHHHcCCCcccCCccceEEEEecccCCC--cccch
Confidence 35566655522 233455556667888889888764 3322222 3466666653 566655433211 1111
Q ss_pred HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCcc
Q 013791 99 ASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINYA 149 (436)
Q Consensus 99 ~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~~~~~~~VvDhf~~~ 149 (436)
..+....+.++.+.+..++.....+...+.+.|+..+- -..+..+-.+.
T Consensus 168 ~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~--~v~v~e~l~~~ 216 (263)
T PLN02625 168 DVAEAAADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDT--PAAAVERGTTP 216 (263)
T ss_pred hhHHHHhCCCCeEEEECchhhHHHHHHHHHHcCCCCCC--eEEEEEECCCC
Confidence 22333344444555555555556677777777774222 13455444333
No 158
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=20.30 E-value=1.3e+02 Score=22.10 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEE
Q 013791 306 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQ 341 (436)
Q Consensus 306 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlE 341 (436)
++....+.|.++|+|.++- .+..| +.+++++
T Consensus 4 d~~~~~~Gd~v~Yti~v~N-~g~~~----a~~v~v~ 34 (53)
T TIGR01451 4 DKTVATIGDTITYTITVTN-NGNVP----ATNVVVT 34 (53)
T ss_pred CccccCCCCEEEEEEEEEE-CCCCc----eEeEEEE
Confidence 4556789999999999985 23344 4567665
No 159
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=20.26 E-value=3.8e+02 Score=24.49 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCCeEEEEE-cCcccccchhHHHHHHHh--CCceEEEecCCCCCcc--ccccccccc---CEEEEeCCCCCcCCCCCCHH
Q 013791 28 TDRRVLVLV-DDFAIKSSHSLYFGSLTS--RGFQLEFKLADDPNIG--LQRYGQYLY---DALVLFCPSVERFGGSIDVA 99 (436)
Q Consensus 28 ~~~r~LVl~-d~~~~~~~~S~f~~~L~~--rGf~v~~~~~~d~~~~--L~~~ge~~y---d~LII~~p~~~~~~~~l~~~ 99 (436)
.++++.+|. -++..-...+.+.+.|++ +|++++.. |.=.+++ ....|.+.. ....+..+..+ .....
T Consensus 75 ~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~ii-PGiSs~~~a~a~~g~~~~~~~~~~~~~~~~~~----~~~~~ 149 (210)
T PF00590_consen 75 EGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEII-PGISSFQAAAARLGIPLTDGGFISLHGLRDLD----TEREK 149 (210)
T ss_dssp TTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE---TTHHHHHHHHCTSTSSBTTTBEEEETSSSS----HHHHH
T ss_pred ccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEE-ecCcHHHHHHHHHcCCcccCcEEEEEEecccc----cchHH
Confidence 455666665 334556777888888999 99999874 3322222 235555544 22233212222 12456
Q ss_pred HHHHHHHCCCcEEEEeCCCCcHHHHHHHHHc
Q 013791 100 SIVDFVDSGHDLIVAADSNASDLIREVATEC 130 (436)
Q Consensus 100 ~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~El 130 (436)
.+.+.+++++.++++.++.....+...+.+.
T Consensus 150 ~l~~~~~~~~~~vil~~~~~~~~i~~~L~~~ 180 (210)
T PF00590_consen 150 LLENLLANGDTLVILTDPRRLAEIAELLLER 180 (210)
T ss_dssp HHHHHHTTTSEEEEEESGCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEEccCchHHHHHHHHHhh
Confidence 7777788888888887776666677777666
No 160
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=20.19 E-value=2.3e+02 Score=26.43 Aligned_cols=68 Identities=24% Similarity=0.095 Sum_probs=42.4
Q ss_pred CcccccchhHHHHHHHhCCceEEEecCC-CCCcccccccccccCEEEEeCCCCCcCCCCCC-----HHHHHHHHHCCCcE
Q 013791 38 DFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNIGLQRYGQYLYDALVLFCPSVERFGGSID-----VASIVDFVDSGHDL 111 (436)
Q Consensus 38 ~~~~~~~~S~f~~~L~~rGf~v~~~~~~-d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~-----~~~L~~Fvd~GGNi 111 (436)
+.+..--|..-++.|+..|.++.+..+. ++. .+.||.|||=..........+. .+.|++|+++|+-|
T Consensus 6 d~aF~f~y~e~~~~l~~~G~~v~~~s~~~~~~-------l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pi 78 (198)
T cd03130 6 DEAFNFYYPENLELLEAAGAELVPFSPLKDEE-------LPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPI 78 (198)
T ss_pred cCccccccHHHHHHHHHCCCEEEEECCCCCCC-------CCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCE
Confidence 4456677888899999999999987552 221 1236876664322110001121 37788999999876
Q ss_pred E
Q 013791 112 I 112 (436)
Q Consensus 112 L 112 (436)
+
T Consensus 79 l 79 (198)
T cd03130 79 Y 79 (198)
T ss_pred E
Confidence 6
No 161
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=20.05 E-value=2.6e+02 Score=28.62 Aligned_cols=54 Identities=11% Similarity=0.308 Sum_probs=37.8
Q ss_pred cccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCC-cHHHHHHHHHcC
Q 013791 77 YLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA-SDLIREVATECG 131 (436)
Q Consensus 77 ~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~~-~~~lr~ll~ElG 131 (436)
..+|.+|+.-||.+.... .=...+..-+..||-|+++++... -+.+..+++.++
T Consensus 75 ~~~d~~~~~~pk~k~~~~-~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~ 129 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQ-FQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYA 129 (342)
T ss_pred CCCCEEEEECCCCHHHHH-HHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHhc
Confidence 356999999999984311 112556666778999999887654 356777777775
No 162
>PRK09739 hypothetical protein; Provisional
Probab=20.02 E-value=2.2e+02 Score=26.31 Aligned_cols=37 Identities=14% Similarity=0.006 Sum_probs=24.0
Q ss_pred CeEEEEEcCcccc----cchhHHHHHHHhCCceEEEecCCC
Q 013791 30 RRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 30 ~r~LVl~d~~~~~----~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
.|+|+|.-++... ..-..|.+.|+++|++++.....+
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 4677777554321 223457888999999998764433
Done!