Query 013791
Match_columns 436
No_of_seqs 162 out of 302
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:11:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rht_A (gatase1)-like protein; 97.6 0.00066 2.3E-08 65.5 13.3 105 29-137 4-114 (259)
2 2gk3_A Putative cytoplasmic pr 96.8 0.017 5.9E-07 55.1 13.8 92 44-137 41-155 (256)
3 3soz_A ORF 245 protein, cytopl 95.2 0.011 3.6E-07 56.7 3.4 90 48-137 38-148 (248)
4 1t0b_A THUA-like protein; treh 94.1 0.098 3.3E-06 49.9 7.3 104 28-135 6-121 (252)
5 4e5v_A Putative THUA-like prot 92.8 0.31 1.1E-05 47.2 8.5 85 29-115 4-93 (281)
6 2p9r_A Alpha-2-M, alpha-2-macr 91.2 0.77 2.6E-05 36.9 7.9 72 306-382 9-86 (102)
7 3fni_A Putative diflavin flavo 89.8 1.1 3.8E-05 39.1 8.3 107 28-137 3-120 (159)
8 3f6r_A Flavodoxin; FMN binding 89.3 2.5 8.5E-05 35.7 10.0 103 30-137 2-122 (148)
9 3nrp_A Periplasmic protein-pro 88.9 0.8 2.7E-05 40.6 6.5 70 312-384 39-120 (160)
10 2o6f_A 34 kDa membrane antigen 88.4 1 3.5E-05 40.9 7.0 70 313-384 70-152 (189)
11 2fz5_A Flavodoxin; alpha/beta 87.4 3.3 0.00011 34.0 9.4 98 32-136 2-113 (137)
12 3hly_A Flavodoxin-like domain; 87.1 2.2 7.6E-05 37.0 8.4 104 31-137 2-115 (161)
13 5nul_A Flavodoxin; electron tr 87.1 1.6 5.6E-05 36.4 7.2 100 32-137 1-113 (138)
14 3ff4_A Uncharacterized protein 85.5 3.4 0.00012 34.7 8.4 82 47-136 22-110 (122)
15 2zuv_A Lacto-N-biose phosphory 84.9 0.67 2.3E-05 50.0 4.4 92 43-137 466-570 (759)
16 1ydg_A Trp repressor binding p 83.6 3.8 0.00013 36.7 8.4 105 29-137 6-152 (211)
17 2a5l_A Trp repressor binding p 80.8 7.7 0.00026 34.1 9.3 104 30-137 6-145 (200)
18 1f4p_A Flavodoxin; electron tr 80.3 8.8 0.0003 32.0 9.1 101 31-137 2-121 (147)
19 3tty_A Beta-GAL, beta-galactos 78.9 3.9 0.00013 44.2 7.8 81 27-118 394-489 (675)
20 2q9u_A A-type flavoprotein; fl 78.5 5.9 0.0002 39.3 8.5 105 29-137 256-375 (414)
21 2ohh_A Type A flavoprotein FPR 78.2 4.5 0.00015 39.9 7.5 105 28-136 255-375 (404)
22 2vzf_A NADH-dependent FMN redu 77.4 4.5 0.00015 36.1 6.6 109 31-144 4-144 (197)
23 2zki_A 199AA long hypothetical 74.0 11 0.00038 33.1 8.2 103 30-137 5-144 (199)
24 1ykg_A SIR-FP, sulfite reducta 73.7 7.2 0.00025 33.8 6.8 109 24-137 4-130 (167)
25 3b6i_A Flavoprotein WRBA; flav 71.7 17 0.00057 31.7 8.9 103 31-137 3-141 (198)
26 1bvy_F Protein (cytochrome P45 69.6 19 0.00066 32.2 8.8 104 28-137 20-141 (191)
27 2ark_A Flavodoxin; FMN, struct 68.8 19 0.00065 31.5 8.6 100 30-137 5-125 (188)
28 1e5d_A Rubredoxin\:oxygen oxid 68.4 23 0.00079 34.6 9.9 105 29-137 252-369 (402)
29 3pjl_A 34 kDa membrane antigen 68.2 21 0.00073 32.7 8.6 70 313-384 93-175 (212)
30 3ej6_A Catalase-3; heme, hydro 67.3 30 0.001 37.4 11.0 104 26-135 534-651 (688)
31 2hna_A Protein MIOC, flavodoxi 67.2 43 0.0015 27.8 10.2 101 30-137 2-119 (147)
32 2amj_A Modulator of drug activ 67.0 28 0.00096 31.2 9.4 74 29-106 12-94 (204)
33 3lzq_A P19 protein; copper bin 65.6 26 0.0009 30.8 8.4 71 312-384 37-125 (159)
34 2d59_A Hypothetical protein PH 62.8 38 0.0013 28.7 9.0 82 47-135 40-128 (144)
35 4hcj_A THIJ/PFPI domain protei 62.7 14 0.00049 32.6 6.5 85 26-110 5-103 (177)
36 2hr0_A Complement C3 beta chai 62.5 18 0.00062 38.4 8.3 70 306-381 113-189 (645)
37 1ycg_A Nitric oxide reductase; 62.5 20 0.00067 35.0 8.1 106 29-137 251-368 (398)
38 1sqs_A Conserved hypothetical 62.4 14 0.00048 33.9 6.6 103 31-137 3-151 (242)
39 1y81_A Conserved hypothetical 61.6 30 0.001 29.2 8.1 84 47-137 32-122 (138)
40 2vrn_A Protease I, DR1199; cys 61.0 20 0.00067 31.4 7.0 87 26-112 6-112 (190)
41 2iuf_A Catalase; oxidoreductas 60.6 31 0.0011 37.4 9.6 104 27-136 527-654 (688)
42 2fex_A Conserved hypothetical 60.0 30 0.001 30.3 8.1 97 30-132 2-112 (188)
43 1t5b_A Acyl carrier protein ph 59.6 37 0.0013 29.4 8.7 103 30-136 2-170 (201)
44 1obo_A Flavodoxin; electron tr 59.3 35 0.0012 29.0 8.2 99 30-137 2-119 (169)
45 2ds4_A Tripartite motif protei 58.9 37 0.0013 27.1 7.8 72 309-382 23-97 (113)
46 3l18_A Intracellular protease 58.3 19 0.00066 30.7 6.4 98 29-132 2-113 (168)
47 3rgh_A Filamin-A; cell adhesio 56.5 22 0.00076 28.3 6.0 33 349-382 53-85 (100)
48 1t0i_A YLR011WP; FMN binding p 56.0 30 0.001 30.1 7.3 103 31-137 2-150 (191)
49 1oi4_A Hypothetical protein YH 55.9 39 0.0013 29.8 8.2 85 28-112 22-122 (193)
50 1czn_A Flavodoxin; FMN binding 55.7 39 0.0013 28.7 7.9 100 30-137 1-119 (169)
51 4e08_A DJ-1 beta; flavodoxin-l 54.5 28 0.00095 30.6 6.9 110 29-148 5-130 (190)
52 2hpv_A FMN-dependent NADH-azor 54.5 35 0.0012 30.1 7.6 102 31-136 3-176 (208)
53 3ttv_A Catalase HPII; heme ori 53.4 25 0.00087 38.4 7.4 102 26-133 597-711 (753)
54 2q62_A ARSH; alpha/beta, flavo 52.3 53 0.0018 30.6 8.8 106 28-137 33-171 (247)
55 2b39_A C3; thioester, immune d 50.4 50 0.0017 39.3 10.0 70 306-381 134-210 (1661)
56 1iuk_A Hypothetical protein TT 50.1 36 0.0012 28.7 6.6 83 47-136 31-122 (140)
57 2zay_A Response regulator rece 49.5 42 0.0014 27.0 6.8 94 28-132 7-105 (147)
58 1vhq_A Enhancing lycopene bios 49.4 34 0.0012 31.2 6.8 37 30-66 7-48 (232)
59 3uk7_A Class I glutamine amido 49.0 24 0.00082 34.9 6.1 43 24-66 200-242 (396)
60 3fvw_A Putative NAD(P)H-depend 48.3 97 0.0033 27.1 9.5 104 30-137 3-145 (192)
61 3ot1_A 4-methyl-5(B-hydroxyeth 47.7 29 0.00098 31.1 5.9 59 29-87 9-80 (208)
62 1rtt_A Conserved hypothetical 46.8 36 0.0012 29.7 6.4 110 30-144 7-150 (193)
63 3uk7_A Class I glutamine amido 46.1 41 0.0014 33.2 7.3 40 27-66 10-49 (396)
64 3efe_A THIJ/PFPI family protei 45.8 65 0.0022 28.8 8.1 94 30-132 6-123 (212)
65 3f2v_A General stress protein 45.2 27 0.00092 31.3 5.3 74 30-107 2-83 (192)
66 3gfs_A FMN-dependent NADPH-azo 44.0 84 0.0029 26.8 8.2 62 77-144 62-137 (174)
67 2ab0_A YAJL; DJ-1/THIJ superfa 43.8 34 0.0012 30.5 5.8 38 30-67 3-40 (205)
68 2pn5_A TEP1R, thioester-contai 43.8 43 0.0015 38.8 7.9 71 306-381 107-184 (1325)
69 3eod_A Protein HNR; response r 43.8 45 0.0015 26.1 6.0 94 28-132 6-102 (130)
70 1u9c_A APC35852; structural ge 43.4 77 0.0026 28.3 8.2 37 30-66 6-52 (224)
71 3hr4_A Nitric oxide synthase, 42.9 1.6E+02 0.0053 27.0 10.2 104 28-137 39-159 (219)
72 1rw7_A YDR533CP; alpha-beta sa 42.6 45 0.0016 30.6 6.6 37 30-66 4-52 (243)
73 3kht_A Response regulator; PSI 41.9 77 0.0026 25.2 7.3 93 30-131 6-103 (144)
74 4dik_A Flavoprotein; TM0755, e 41.0 82 0.0028 31.6 8.6 108 27-137 263-385 (410)
75 1rli_A Trp repressor binding p 40.9 86 0.003 26.6 7.8 57 76-136 69-152 (184)
76 2fzv_A Putative arsenical resi 40.7 1E+02 0.0036 29.3 8.9 107 28-137 57-196 (279)
77 3lcm_A SMU.1420, putative oxid 40.7 1.5E+02 0.0052 25.9 9.6 71 31-106 2-97 (196)
78 3cu7_A Complement C5; Mg domai 40.7 39 0.0013 40.2 7.0 70 306-382 131-207 (1676)
79 2duw_A Putative COA-binding pr 39.9 62 0.0021 27.3 6.5 82 47-136 31-122 (145)
80 3ha2_A NADPH-quinone reductase 39.1 80 0.0027 27.7 7.4 73 31-107 2-76 (177)
81 2d7n_A Filamin-C; beta-sandwic 37.6 55 0.0019 25.9 5.4 46 336-382 22-68 (93)
82 1ka9_H Imidazole glycerol phos 37.6 1.8E+02 0.0063 25.3 9.7 71 31-112 4-79 (200)
83 3m3p_A Glutamine amido transfe 37.1 1.2E+02 0.004 28.2 8.5 99 29-136 3-105 (250)
84 2di7_A BK158_1; beta-sandwich, 37.0 12 0.00042 31.5 1.5 30 353-382 77-106 (124)
85 2rk3_A Protein DJ-1; parkinson 36.3 58 0.002 28.6 6.0 98 29-132 3-117 (197)
86 3gt7_A Sensor protein; structu 36.1 1.5E+02 0.005 24.0 8.3 94 28-132 6-104 (154)
87 2d7p_A Filamin-C; beta-sandwic 35.9 46 0.0016 27.1 4.8 61 310-382 24-87 (112)
88 3n7t_A Macrophage binding prot 35.5 88 0.003 29.1 7.4 37 30-66 10-58 (247)
89 2dj4_A Filamin-B; beta-sandwic 35.4 64 0.0022 25.8 5.6 42 340-382 45-89 (108)
90 3l3b_A ES1 family protein; ssg 35.2 55 0.0019 30.4 5.8 37 30-66 24-65 (242)
91 1k68_A Phytochrome response re 35.1 1.3E+02 0.0043 23.3 7.5 93 29-132 2-108 (140)
92 3l7n_A Putative uncharacterize 34.4 1.5E+02 0.0052 26.8 8.8 95 31-135 2-106 (236)
93 3gl9_A Response regulator; bet 33.9 1.6E+02 0.0055 22.6 8.1 92 30-132 3-99 (122)
94 1k66_A Phytochrome response re 33.0 1.2E+02 0.0042 23.8 7.1 96 27-131 4-114 (149)
95 3r6w_A FMN-dependent NADH-azor 33.0 1.3E+02 0.0045 26.5 7.9 37 31-67 3-46 (212)
96 2pln_A HP1043, response regula 32.1 52 0.0018 26.0 4.6 90 28-131 17-108 (137)
97 2qip_A Protein of unknown func 32.1 50 0.0017 28.5 4.7 75 43-125 61-151 (165)
98 3klb_A Putative flavoprotein; 31.2 1.5E+02 0.0051 25.1 7.7 57 75-135 75-139 (162)
99 3qe2_A CPR, P450R, NADPH--cyto 31.1 1.7E+02 0.0057 30.9 9.5 109 28-137 17-143 (618)
100 3jte_A Response regulator rece 30.6 1.2E+02 0.0041 23.9 6.6 93 31-132 5-100 (143)
101 4hs4_A Chromate reductase; tri 30.6 1.8E+02 0.0062 25.7 8.4 108 30-144 7-151 (199)
102 2e9j_A Filamin-B; beta-sandwic 30.5 36 0.0012 27.9 3.3 61 311-382 37-100 (119)
103 2d7m_A Filamin-C; beta-sandwic 30.4 69 0.0024 25.9 5.1 61 311-382 27-90 (115)
104 1n57_A Chaperone HSP31, protei 29.5 1E+02 0.0034 29.3 6.8 39 29-67 48-100 (291)
105 3tem_A Ribosyldihydronicotinam 28.6 1.2E+02 0.0042 27.5 7.0 39 29-67 1-43 (228)
106 2xvc_A ESCRT-III, SSO0910; cel 28.4 40 0.0014 24.7 2.8 31 96-135 10-40 (59)
107 3svl_A Protein YIEF; E. coli C 28.4 2.5E+02 0.0086 24.5 8.9 111 30-144 5-150 (193)
108 3hzh_A Chemotaxis response reg 28.4 1.1E+02 0.0037 24.9 6.2 93 31-132 38-134 (157)
109 3snk_A Response regulator CHEY 28.3 1.3E+02 0.0044 23.6 6.4 94 30-131 15-109 (135)
110 3grc_A Sensor protein, kinase; 28.1 56 0.0019 25.9 4.1 69 29-107 6-74 (140)
111 3p0r_A Azoreductase; structura 28.0 1.5E+02 0.0052 26.3 7.5 37 30-66 5-49 (211)
112 3rpe_A MDAB, modulator of drug 27.9 43 0.0015 30.8 3.7 60 30-89 26-94 (218)
113 1d4a_A DT-diaphorase, quinone 27.6 2.9E+02 0.0098 25.6 9.6 38 30-67 3-44 (273)
114 4fxk_A Complement C4 beta chai 27.4 1.9E+02 0.0065 30.1 9.1 70 306-382 127-202 (656)
115 2rjn_A Response regulator rece 27.2 1.7E+02 0.0057 23.5 7.1 90 28-127 6-98 (154)
116 1qkk_A DCTD, C4-dicarboxylate 26.8 1.6E+02 0.0056 23.6 6.9 93 29-132 3-98 (155)
117 3lte_A Response regulator; str 26.8 1.2E+02 0.0041 23.4 5.9 93 29-132 6-102 (132)
118 3k1y_A Oxidoreductase; structu 26.8 1E+02 0.0036 27.3 6.0 109 29-142 11-158 (191)
119 3lua_A Response regulator rece 26.7 1.5E+02 0.0053 23.2 6.7 92 30-131 5-103 (140)
120 3f5d_A Protein YDEA; unknow pr 26.7 2E+02 0.0069 25.5 8.0 96 30-132 4-111 (206)
121 3lpm_A Putative methyltransfer 26.7 1.1E+02 0.0039 27.7 6.4 102 32-136 74-197 (259)
122 4gdh_A DJ-1, uncharacterized p 26.2 48 0.0017 29.3 3.6 35 30-64 5-39 (194)
123 2ld4_A Anamorsin; methyltransf 26.1 63 0.0021 27.2 4.3 106 26-132 10-128 (176)
124 2ee9_A Filamin-B; beta-sandwic 26.0 86 0.003 24.9 4.7 46 336-382 30-76 (95)
125 2dia_A Filamin-B; beta-sandwic 26.0 1.5E+02 0.0052 23.6 6.4 32 350-382 57-88 (113)
126 3dmg_A Probable ribosomal RNA 25.6 30 0.001 34.4 2.3 72 48-130 78-152 (381)
127 3kkl_A Probable chaperone prot 24.6 1.8E+02 0.006 26.8 7.4 37 30-66 4-52 (244)
128 2qxy_A Response regulator; reg 24.4 1.4E+02 0.005 23.3 6.0 91 30-132 5-98 (142)
129 2dmb_A Filamin-B; beta-sandwic 24.3 1E+02 0.0036 25.4 5.1 29 353-382 61-89 (124)
130 3hv2_A Response regulator/HD d 24.1 97 0.0033 25.0 5.0 92 29-131 14-108 (153)
131 2bpo_A CPR, P450R, NADPH-cytoc 23.8 2.7E+02 0.0092 29.7 9.5 110 29-145 49-178 (682)
132 3cnb_A DNA-binding response re 23.7 2E+02 0.0069 22.3 6.8 94 28-132 7-107 (143)
133 2ab1_A Hypothetical protein; H 23.7 1.8E+02 0.0061 24.1 6.5 43 95-137 48-95 (122)
134 4dad_A Putative pilus assembly 23.4 1.7E+02 0.0058 23.1 6.3 93 29-132 20-118 (146)
135 4gi5_A Quinone reductase; prot 23.4 1.4E+02 0.0049 28.3 6.6 36 28-63 21-60 (280)
136 2e0n_A Precorrin-2 C20-methylt 23.2 2.7E+02 0.0092 25.4 8.4 96 28-131 95-196 (259)
137 3hrz_A Cobra venom factor; ser 22.5 89 0.003 33.2 5.4 67 306-382 111-183 (627)
138 3v0r_A Major allergen ALT A 1; 22.5 1.3E+02 0.0046 25.5 5.4 83 285-369 10-102 (133)
139 2klu_A T-cell surface glycopro 22.5 27 0.00091 26.3 0.9 27 408-434 3-29 (70)
140 2j48_A Two-component sensor ki 22.4 1.3E+02 0.0045 22.2 5.2 81 30-120 2-87 (119)
141 1i3c_A Response regulator RCP1 22.1 2.9E+02 0.0098 21.9 7.6 94 30-132 9-114 (149)
142 3u7r_A NADPH-dependent FMN red 21.9 4E+02 0.014 23.3 11.7 103 30-137 3-140 (190)
143 3kto_A Response regulator rece 21.9 1.3E+02 0.0046 23.5 5.3 94 30-132 7-103 (136)
144 1o1y_A Conserved hypothetical 21.5 2.3E+02 0.0079 25.7 7.4 94 29-132 12-112 (239)
145 4b7l_A Filamin-B; structural p 21.5 1.2E+02 0.004 29.7 5.7 62 310-382 269-335 (347)
146 3i4a_A N(G),N(G)-dimethylargin 21.2 2.5E+02 0.0085 26.8 7.9 87 42-130 67-181 (308)
147 3gra_A Transcriptional regulat 21.1 2E+02 0.007 25.3 6.8 60 29-88 5-81 (202)
148 4e7p_A Response regulator; DNA 20.9 3E+02 0.01 21.7 7.5 91 31-132 22-117 (150)
149 1ag9_A Flavodoxin; electron tr 20.7 2E+02 0.007 24.4 6.6 98 31-136 2-117 (175)
150 3f6p_A Transcriptional regulat 20.5 1.7E+02 0.0059 22.3 5.6 92 30-132 3-96 (120)
151 1sy7_A Catalase 1; heme oxidat 20.3 1.6E+02 0.0055 31.9 6.9 99 28-132 533-647 (715)
152 1yob_A Flavodoxin 2, flavodoxi 20.3 1.4E+02 0.0048 25.6 5.4 101 30-136 1-126 (179)
153 3klj_A NAD(FAD)-dependent dehy 20.2 55 0.0019 32.1 3.0 81 52-132 72-170 (385)
No 1
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=97.60 E-value=0.00066 Score=65.50 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=68.5
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G 108 (436)
-.|+|+| +++.....-.-|.+.|++.||+|++..+.+...+ ...-..||.+|+.......+.+ -..+.|.+||.+|
T Consensus 4 m~~vLiV-~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~--~~~L~~yDvIIl~d~~~~~l~~-~~~~~L~~yV~~G 79 (259)
T 3rht_A 4 MTRVLYC-GDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDV--GELLAKQDLVILSDYPAERMTA-QAIDQLVTMVKAG 79 (259)
T ss_dssp --CEEEE-ESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCS--SHHHHTCSEEEEESCCGGGBCH-HHHHHHHHHHHTT
T ss_pred CceEEEE-CCCCchhHHHHHHHHHHhCCceEEEecccccccC--hhHHhcCCEEEEcCCccccCCH-HHHHHHHHHHHhC
Confidence 3688888 5544445556688899999999999866654211 1223456998887554443421 3348999999999
Q ss_pred CcEEEEeCCCCcH----HHH--HHHHHcCceecCC
Q 013791 109 HDLIVAADSNASD----LIR--EVATECGVDFDED 137 (436)
Q Consensus 109 GNiLi~~~~~~~~----~lr--~ll~ElGI~~~~~ 137 (436)
|.+++++++..-. .+. +|.+-+.+++.+.
T Consensus 80 GgLi~~gG~~s~~g~~g~~~~t~L~~vLPv~~~~~ 114 (259)
T 3rht_A 80 CGLVMLGGWESYHGLGGNWDQTLLAEVLPVDIKSA 114 (259)
T ss_dssp CEEEEECSTTSSSTTTTCGGGSGGGGTSSEECCSS
T ss_pred CeEEEecCccccccccCcccccchhhhCCcccccc
Confidence 9999888754321 221 4666778887764
No 2
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=96.81 E-value=0.017 Score=55.12 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=60.5
Q ss_pred chhHHHHHHHhCCceEEEecCC----CCCcccccccccccCEEEEeCCCCCcCCC-----------CCCHHHHHHHHHCC
Q 013791 44 SHSLYFGSLTSRGFQLEFKLAD----DPNIGLQRYGQYLYDALVLFCPSVERFGG-----------SIDVASIVDFVDSG 108 (436)
Q Consensus 44 ~~S~f~~~L~~rGf~v~~~~~~----d~~~~L~~~ge~~yd~LII~~p~~~~~~~-----------~l~~~~L~~Fvd~G 108 (436)
....+.+.|+..|+++++..+. +-...+ ..-..||.||+.......+.+ .-..+.|.+|+.+|
T Consensus 41 ~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~--~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~G 118 (256)
T 2gk3_A 41 GATWLLECLRKGGVDIDYMPAHTVQIAFPESI--DELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNG 118 (256)
T ss_dssp SCHHHHHHHHHTTCEEEEECHHHHHHCCCCSH--HHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhcCceEEEEecccchhhCCcCh--hHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhC
Confidence 3446888999999999987332 110011 123457998888755544432 23459999999999
Q ss_pred CcEEEEeCCCCc-------HHHH-HHHHHcCceecCC
Q 013791 109 HDLIVAADSNAS-------DLIR-EVATECGVDFDED 137 (436)
Q Consensus 109 GNiLi~~~~~~~-------~~lr-~ll~ElGI~~~~~ 137 (436)
|.+++++++... ...+ ++.+-+++++.++
T Consensus 119 Ggll~igG~~s~~~~~g~g~~~~t~l~~vLPv~~~~~ 155 (256)
T 2gk3_A 119 GGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDG 155 (256)
T ss_dssp CEEEEECSTTSSSCGGGTTCGGGSTTGGGSSEEECSS
T ss_pred CEEEEECChhhhhccccCCccccCChHhhCCeeeccC
Confidence 999988876432 1112 3677789998875
No 3
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=95.17 E-value=0.011 Score=56.68 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=62.9
Q ss_pred HHHHHHhCCceEEEecCCCC--CcccccccccccCEEEEeCCCCCcCC-----------CCCCHHHHHHHHHCCCcEEEE
Q 013791 48 YFGSLTSRGFQLEFKLADDP--NIGLQRYGQYLYDALVLFCPSVERFG-----------GSIDVASIVDFVDSGHDLIVA 114 (436)
Q Consensus 48 f~~~L~~rGf~v~~~~~~d~--~~~L~~~ge~~yd~LII~~p~~~~~~-----------~~l~~~~L~~Fvd~GGNiLi~ 114 (436)
+.+.|+..|++|++...++. .+-....+-..||.+|+.......+. ..-..+.|.+||.+||-++++
T Consensus 38 ~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgLi~~ 117 (248)
T 3soz_A 38 LLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLLMI 117 (248)
T ss_dssp HHHHHTTTTCEEEEEETTHHHHSCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCceeEEeCchhhhhhCCCChHHHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHhCCEEEEE
Confidence 78889999999999866553 11222344467799999877764441 123359999999999999998
Q ss_pred eCCCC------cHHHH--HHHHHcCceecCC
Q 013791 115 ADSNA------SDLIR--EVATECGVDFDED 137 (436)
Q Consensus 115 ~~~~~------~~~lr--~ll~ElGI~~~~~ 137 (436)
+++.. ..... +|.+-|++++.+.
T Consensus 118 gG~~~f~g~~~~g~~~~t~l~~vLPV~~~~~ 148 (248)
T 3soz_A 118 GGYLSFTGIEAKANYKNTVLAEVLPVDMLDV 148 (248)
T ss_dssp CSTTSSSCGGGCSCGGGSTHHHHSSEECCSS
T ss_pred cCchhccccccccccccCcHHHhCCcccccc
Confidence 88653 11222 4778889998754
No 4
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=94.08 E-value=0.098 Score=49.90 Aligned_cols=104 Identities=23% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCCeEEEEEcCcccc-----------cchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCC-CCCcCCCC
Q 013791 28 TDRRVLVLVDDFAIK-----------SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCP-SVERFGGS 95 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~-----------~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p-~~~~~~~~ 95 (436)
...|+||.-+.+-++ ..+..+.+.|++.||+|++...+|..-.+...--..||.||++.. ....+..
T Consensus 6 ~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~l~~- 84 (252)
T 1t0b_A 6 TPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKD- 84 (252)
T ss_dssp CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCH-
T ss_pred CCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCcCCH-
Confidence 357999998654332 123456889999999999975444321122222346799987632 3332311
Q ss_pred CCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceec
Q 013791 96 IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFD 135 (436)
Q Consensus 96 l~~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~ 135 (436)
--.+.|.+|+++||.++.+=..... ..+.+-+|..+.
T Consensus 85 ~~~~al~~~V~~GgG~vgiH~a~~~---~~y~~llGg~f~ 121 (252)
T 1t0b_A 85 EVVERVHRRVLEGMGLIVLHSGHFS---KIFKKLMGTTCN 121 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEGGGGGS---HHHHHHHCSCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcccCCc---HHHHhhhCCccc
Confidence 1237899999999998865332212 345555676653
No 5
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=92.80 E-value=0.31 Score=47.21 Aligned_cols=85 Identities=14% Similarity=0.270 Sum_probs=52.5
Q ss_pred CCeEEEEEcC--cccccchhHHHHHHHhCC-ceEEEecCCC--CCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHH
Q 013791 29 DRRVLVLVDD--FAIKSSHSLYFGSLTSRG-FQLEFKLADD--PNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (436)
Q Consensus 29 ~~r~LVl~d~--~~~~~~~S~f~~~L~~rG-f~v~~~~~~d--~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~ 103 (436)
.-|+||+--. +........+.+.|++.| |+|+.....+ ++..++...-..||.||+.. ....+. .--.+.|.+
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~-~~~~l~-~~~~~~l~~ 81 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDY-NGDSWP-EETNRRFLE 81 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECC-CSSCCC-HHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeC-CCCcCC-HHHHHHHHH
Confidence 4578888632 333445557888899999 9999863210 11122222345689988544 333231 122388999
Q ss_pred HHHCCCcEEEEe
Q 013791 104 FVDSGHDLIVAA 115 (436)
Q Consensus 104 Fvd~GGNiLi~~ 115 (436)
||++||.++.+=
T Consensus 82 yV~~Ggglv~~H 93 (281)
T 4e5v_A 82 YVQNGGGVVIYH 93 (281)
T ss_dssp HHHTTCEEEEEG
T ss_pred HHHcCCCEEEEe
Confidence 999999998664
No 6
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=91.21 E-value=0.77 Score=36.95 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=52.9
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce----EeeccccCCCceEEEEEecCCc--eeeeEEEEe
Q 013791 306 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTLSTDQKGHYSAEFKVPDV--YGVFQFKVE 379 (436)
Q Consensus 306 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~----~R~~L~~~~~~~y~~~f~~PD~--hGvf~f~v~ 379 (436)
+...||-.|.|.|.+=+- +..+.|... .-+.+...||- .|..+.....|.|+..|+||+. -|.|+.++.
T Consensus 9 Dr~iYrPGetV~~~~~~~---~~~~~p~~~--~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~ 83 (102)
T 2p9r_A 9 DKSIYKPGQTVKFRVVSM---DENFHPLNE--LIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQ 83 (102)
T ss_dssp SCSEECTTCEEEEEEEEE---CGGGCBCCC--EEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEE
T ss_pred CCcccCCCCEEEEEEEEE---CCCCcCCCC--CceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEE
Confidence 345799999999998774 456778643 22455566994 2333444578999999999997 699999998
Q ss_pred eee
Q 013791 380 YQR 382 (436)
Q Consensus 380 Y~R 382 (436)
+..
T Consensus 84 ~~~ 86 (102)
T 2p9r_A 84 KKS 86 (102)
T ss_dssp CTT
T ss_pred ECC
Confidence 853
No 7
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=89.77 E-value=1.1 Score=39.05 Aligned_cols=107 Identities=7% Similarity=-0.007 Sum_probs=65.9
Q ss_pred CCCeEEEEEcCc--ccccchhHHHHHHHhCCceEEEecCCCC-CcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHH
Q 013791 28 TDRRVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDP-NIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDF 104 (436)
Q Consensus 28 ~~~r~LVl~d~~--~~~~~~S~f~~~L~~rGf~v~~~~~~d~-~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~F 104 (436)
..++++|+|.+. +.+.--....+.|++.|.+++.....+. +..-.......||.|||-+|... +.+..+.+.+.
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~---g~~p~~~~l~~ 79 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAA---SAASIQGALST 79 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTT---SHHHHHHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCC---CCccHHHHHHH
Confidence 357899999885 2233444577889999999887655544 32211122344799999988754 22332333333
Q ss_pred HH----CCCcEEEEeCC----CCcHHHHHHHHHcCceecCC
Q 013791 105 VD----SGHDLIVAADS----NASDLIREVATECGVDFDED 137 (436)
Q Consensus 105 vd----~GGNiLi~~~~----~~~~~lr~ll~ElGI~~~~~ 137 (436)
+. +|-.+.+.++. .....++..++++|+.+-..
T Consensus 80 l~~~~~~~k~va~fgs~g~~~~a~~~l~~~l~~~G~~~v~~ 120 (159)
T 3fni_A 80 ILGSVNEKQAVGIFETGGGDDEPIDPLLSKFRNLGLTTAFP 120 (159)
T ss_dssp HHHHCCTTSEEEEECCSSSCBCCHHHHHHHHHHTTCEESSS
T ss_pred HHhhcccCCEEEEEEcCCCCcHHHHHHHHHHHHCCCEEecC
Confidence 32 34444455542 23478899999999998764
No 8
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=89.30 E-value=2.5 Score=35.69 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=64.9
Q ss_pred CeEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCccccccccc-ccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQY-LYDALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~-~yd~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
.|++|++.+.. .+.-=..+.+.|+++|++++....++.+.. ... .||.+|+..|....-.+.+ +..+.+|++
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~~d~ii~g~pty~~~~G~~-p~~~~~fl~ 76 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAE----NLADGYDAVLFGCSAWGMEDLEM-QDDFLSLFE 76 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCT----TTTTTCSEEEEEECEECSSSCEE-CHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHh----HhcccCCEEEEEecccCCCCCCC-cHHHHHHHH
Confidence 47899997752 233333467778889999988766554221 122 6799999998743100222 456777776
Q ss_pred C-------CCcEEEEeC--CC------CcHHHHHHHHHcCceecCC
Q 013791 107 S-------GHDLIVAAD--SN------ASDLIREVATECGVDFDED 137 (436)
Q Consensus 107 ~-------GGNiLi~~~--~~------~~~~lr~ll~ElGI~~~~~ 137 (436)
. |-.+.+.+. .. ....++..++++|...-..
T Consensus 77 ~l~~~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 122 (148)
T 3f6r_A 77 EFDRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAE 122 (148)
T ss_dssp TGGGTCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSC
T ss_pred HhhccCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeec
Confidence 5 344444432 21 1578899999999998865
No 9
>3nrp_A Periplasmic protein-probably involved in high-AFF transport; immunoglobulin-like fold, iron transporter, copper binding; 1.60A {Escherichia coli} PDB: 3nrq_A
Probab=88.90 E-value=0.8 Score=40.60 Aligned_cols=70 Identities=19% Similarity=0.337 Sum_probs=44.8
Q ss_pred eCCceEEEEEEEEEeC-------CeeeecccCCeEEEEEEeC--ceEeecc---ccCCCceEEEEEecCCceeeeEEEEe
Q 013791 312 INDDLEYSVEIYEWSG-------TSWEPYVSDDVQVQFYMMS--PYVLKTL---STDQKGHYSAEFKVPDVYGVFQFKVE 379 (436)
Q Consensus 312 i~d~v~y~i~i~e~~~-------~~W~P~~~ddiQlEf~mld--P~~R~~L---~~~~~~~y~~~f~~PD~hGvf~f~v~ 379 (436)
=.++|+-+++|....+ |.|+||- +|..|++..| .-..-++ ...+.-+|-.+.|+|.. |-|+-++.
T Consensus 39 ~~sdiHLEAdI~a~e~n~~Gf~~G~~vPyL--~v~y~i~~~~~~~v~~g~~mPMvA~dGpHYG~NvkL~G~-G~Y~v~~~ 115 (160)
T 3nrp_A 39 AKADVHLEADIHAVEGNKNGFGAGEWIPYL--TISYTLVNNDTGEKQEGTFMPMVASDGPHYGANIKMMGV-GNYKVTYH 115 (160)
T ss_dssp GGCSEEEEEEEEECTTCSSSCCTTCBCCSC--EEEEEEEETTTCCEEEEECEEEEETTEEEEEEEECCCSS-EEEEEEEE
T ss_pred ccCCeEEEEEeeccccCcCcCcCCCCCCCc--eeEEEEEeCCCCeEEEeeccceecCCCCccccccCCCCC-ccEEEEEE
Confidence 4688999999998876 8999995 5777777553 2222222 12233356667777544 66666655
Q ss_pred eeecc
Q 013791 380 YQRLG 384 (436)
Q Consensus 380 Y~R~G 384 (436)
..-|+
T Consensus 116 I~pPs 120 (160)
T 3nrp_A 116 IEPPS 120 (160)
T ss_dssp EECGG
T ss_pred ECCCc
Confidence 55443
No 10
>2o6f_A 34 kDa membrane antigen; IG-fold, syphilis, metal-ION binding, dimer, membrane protei protein binding; 1.63A {Treponema pallidum} PDB: 2o6d_A 2o6e_A 2o6c_A
Probab=88.42 E-value=1 Score=40.94 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=44.5
Q ss_pred CCceEEEEEEEEEe--------CCeeeecccCCeEEEEEEeCc-e--Eeec--cccCCCceEEEEEecCCceeeeEEEEe
Q 013791 313 NDDLEYSVEIYEWS--------GTSWEPYVSDDVQVQFYMMSP-Y--VLKT--LSTDQKGHYSAEFKVPDVYGVFQFKVE 379 (436)
Q Consensus 313 ~d~v~y~i~i~e~~--------~~~W~P~~~ddiQlEf~mldP-~--~R~~--L~~~~~~~y~~~f~~PD~hGvf~f~v~ 379 (436)
.++|+-+++|.... .|.|+||- .|+.+.+..+. . .++. |...+.-.|-.+.||+.--|-|+-++.
T Consensus 70 ~sDiHLEADIha~~~~n~~Gf~~G~wvPyL--~V~~~i~k~g~~~v~~gtfmPM~A~DGPHYG~NvkL~G~~G~Y~vt~~ 147 (189)
T 2o6f_A 70 EADCHIEADIHANEAGKDLGYGVGDFVPYL--RVVAFLQKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVRFE 147 (189)
T ss_dssp TCSEEEEEEEEECGGGGGGTCCTTSBCCSC--EEEEEEEETTCCCCEEEECEEEEETTEEEEEEEECCTTCSEEEEEEEE
T ss_pred cCceEEEEEcchhhcCCccccccCCCcCce--EEEEEEEeCCCceEEEEeccccccCCCcccccccccCCCCccEEEEEE
Confidence 57899999999877 78999985 56666666652 1 1221 222334456667777554566666655
Q ss_pred eeecc
Q 013791 380 YQRLG 384 (436)
Q Consensus 380 Y~R~G 384 (436)
..-|+
T Consensus 148 I~pP~ 152 (189)
T 2o6f_A 148 IAAPS 152 (189)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 55543
No 11
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=87.43 E-value=3.3 Score=34.03 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=60.1
Q ss_pred EEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHH-HHHHHHHC-
Q 013791 32 VLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVA-SIVDFVDS- 107 (436)
Q Consensus 32 ~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~-~L~~Fvd~- 107 (436)
+||++.+.. .+.--..+.+.|+++|++++....++.+. .....||.+||..|.-- ....+. .+++|++.
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~----~~l~~~d~vi~g~p~y~---~~~~~~~~~~~fl~~l 74 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNV----DDVASKDVILLGCPAMG---SEELEDSVVEPFFTDL 74 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCH----HHHHTCSEEEEECCCBT---TTBCCHHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCH----HHHhcCCEEEEEccccC---CCCCCHHHHHHHHHHh
Confidence 577776642 12233356677888999998775555322 12345799999999653 224444 46777764
Q ss_pred -----CCcEEEEeC--CC---CcHHHHHHHHHcCceecC
Q 013791 108 -----GHDLIVAAD--SN---ASDLIREVATECGVDFDE 136 (436)
Q Consensus 108 -----GGNiLi~~~--~~---~~~~lr~ll~ElGI~~~~ 136 (436)
|-.+.+.+. .. ....++.++.++|..+.+
T Consensus 75 ~~~l~~k~~~~~~t~g~~~~~~~~~l~~~l~~~g~~~~~ 113 (137)
T 2fz5_A 75 APKLKGKKVGLFGSYGWGSGEWMDAWKQRTEDTGATVIG 113 (137)
T ss_dssp GGGCSSCEEEEEEEESSCCSHHHHHHHHHHHHTTCEEEE
T ss_pred hhhcCCCEEEEEEecCCCCchHHHHHHHHHHHCCCEEcC
Confidence 445554432 21 236778888888988773
No 12
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=87.15 E-value=2.2 Score=37.04 Aligned_cols=104 Identities=13% Similarity=-0.039 Sum_probs=63.4
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH--
Q 013791 31 RVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-- 106 (436)
Q Consensus 31 r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd-- 106 (436)
|++|+|.+.. .+.--....+.|++.|.+++.....+.+..-.......||.|||-+|... +....+.+.+.+.
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~---g~~p~~~fl~~l~~~ 78 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQ---PSEAVATALSTIFAA 78 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSS---CCHHHHHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcC---CchhHHHHHHHHHhh
Confidence 6889997752 23333457788999999988765555432211112235799999999763 2232233333332
Q ss_pred --CCCcEEEEeCC----CCcHHHHHHHHHcCceecCC
Q 013791 107 --SGHDLIVAADS----NASDLIREVATECGVDFDED 137 (436)
Q Consensus 107 --~GGNiLi~~~~----~~~~~lr~ll~ElGI~~~~~ 137 (436)
+|-.+.+.+.. .....++.+++++|+.+-.+
T Consensus 79 ~l~gk~v~~fgs~g~~g~a~~~l~~~l~~~G~~~v~~ 115 (161)
T 3hly_A 79 AHNKQAIGLFDSYGGDDEPIDALLAQFRNLGLHTAFP 115 (161)
T ss_dssp CCTTSEEEEECCCCSSBCCHHHHHHHHHHTTCEESSS
T ss_pred hhCCCEEEEEEcCCCCcHHHHHHHHHHHHCCCEEecC
Confidence 34445555532 23578999999999998754
No 13
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=87.07 E-value=1.6 Score=36.39 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=61.6
Q ss_pred EEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC---CHHHHHHHHH
Q 013791 32 VLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI---DVASIVDFVD 106 (436)
Q Consensus 32 ~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l---~~~~L~~Fvd 106 (436)
++|+|.+.. .+.--....+.|+++|++++....++.+.. .-..||.+||..|... ++.. ..+.+.+.+.
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~d~iiig~pty~--~g~~p~~~~~~fl~~l~ 74 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNID----ELLNEDILILGCSAMT--DEVLEESEFEPFIEEIS 74 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHH----HHTTCSEEEEEECCBT--TTBCCTTTHHHHHHHHG
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHH----HHhhCCEEEEEcCccC--CCCCChHHHHHHHHHHH
Confidence 367776642 233334577889999999987655444221 2346799999988653 1211 3455555554
Q ss_pred ---CCCcEEEEeC--CC---CcHHHHHHHHHcCceecCC
Q 013791 107 ---SGHDLIVAAD--SN---ASDLIREVATECGVDFDED 137 (436)
Q Consensus 107 ---~GGNiLi~~~--~~---~~~~lr~ll~ElGI~~~~~ 137 (436)
+|-.+.+.+. .. ....++..++++|..+-..
T Consensus 75 ~~l~~k~~~~f~t~g~~~~~a~~~l~~~l~~~G~~~v~~ 113 (138)
T 5nul_A 75 TKISGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVET 113 (138)
T ss_dssp GGCTTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSC
T ss_pred hhcCCCEEEEEEecCCCCChHHHHHHHHHHHCCCEEECC
Confidence 4556665543 21 2467888999999998754
No 14
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=85.46 E-value=3.4 Score=34.73 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=57.1
Q ss_pred HHHHHHHhCCceEEEecCCCCCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCC
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA 119 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~~ 119 (436)
..++.|.+.||+|-...|+..++ +|..-.+ -|.++|+-|... .++.+.+-.+.|=..+|+.....
T Consensus 22 ~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~--vDlavi~~p~~~------v~~~v~e~~~~g~k~v~~~~G~~ 93 (122)
T 3ff4_A 22 LAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG--VDTVTLYINPQN------QLSEYNYILSLKPKRVIFNPGTE 93 (122)
T ss_dssp HHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT--CCEEEECSCHHH------HGGGHHHHHHHCCSEEEECTTCC
T ss_pred HHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC--CCEEEEEeCHHH------HHHHHHHHHhcCCCEEEECCCCC
Confidence 46678888999988777765432 1222222 488888877544 45667777788866666655445
Q ss_pred cHHHHHHHHHcCceecC
Q 013791 120 SDLIREVATECGVDFDE 136 (436)
Q Consensus 120 ~~~lr~ll~ElGI~~~~ 136 (436)
.+.+.+.+++.||.+-+
T Consensus 94 ~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 94 NEELEEILSENGIEPVI 110 (122)
T ss_dssp CHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHcCCeEEC
Confidence 78899999999999874
No 15
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=84.90 E-value=0.67 Score=49.95 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=62.7
Q ss_pred cchhH--HHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCC---CC---HHHHHHHHHCCCcEEEE
Q 013791 43 SSHSL--YFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS---ID---VASIVDFVDSGHDLIVA 114 (436)
Q Consensus 43 ~~~S~--f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~---l~---~~~L~~Fvd~GGNiLi~ 114 (436)
+.||. +.++|.+.+++|++..-+|. +....-..||.||-.......+.+. .. .+.|++||.+||.++.+
T Consensus 466 q~ysy~GilEALsg~~~dV~FIsfdDI---~e~e~L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgV 542 (759)
T 2zuv_A 466 QTYSYYGILESLSGMRVNVRFISFDDV---LAHGIDSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGV 542 (759)
T ss_dssp TTHHHHHHHHHHHTSSSEEEEEEHHHH---HHHCCCTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccHHHHHHHHhcCCCceEEecHHHh---ccccccccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEe
Confidence 34455 99999999999999844332 1112236679988655443334332 11 28899999999999988
Q ss_pred eCCCCc-----HHHHHHHHHcCceecCC
Q 013791 115 ADSNAS-----DLIREVATECGVDFDED 137 (436)
Q Consensus 115 ~~~~~~-----~~lr~ll~ElGI~~~~~ 137 (436)
+++..- .....|+.=||++..++
T Consensus 543 GepSsfqg~g~gryFqLADVLGVd~e~g 570 (759)
T 2zuv_A 543 GEPSSAPRFQTGRFFQLADVIGVDEERY 570 (759)
T ss_dssp ESTTEEEEEETTEEETTHHHHSEEECCS
T ss_pred CCccccccccCcccccHHhhcCcccccC
Confidence 887531 12234888899999997
No 16
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=83.60 E-value=3.8 Score=36.72 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=64.7
Q ss_pred CCeEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCC--------------------Cc-ccccccccccCEEEEe
Q 013791 29 DRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDP--------------------NI-GLQRYGQYLYDALVLF 85 (436)
Q Consensus 29 ~~r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~--------------------~~-~L~~~ge~~yd~LII~ 85 (436)
-.|+||++-+.. .+..-..+.+.|++.|.+++.....+. +. .-.......+|.|||.
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~g 85 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFS 85 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEE
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEE
Confidence 358999997762 123334577888889999987655442 11 1112233457999999
Q ss_pred CCCCCcCCCCCCHHHHHHHHHC-----------CCcEEEE--eCCC---C---cHHHHHHHHHcCceecCC
Q 013791 86 CPSVERFGGSIDVASIVDFVDS-----------GHDLIVA--ADSN---A---SDLIREVATECGVDFDED 137 (436)
Q Consensus 86 ~p~~~~~~~~l~~~~L~~Fvd~-----------GGNiLi~--~~~~---~---~~~lr~ll~ElGI~~~~~ 137 (436)
+|.-- +.++ ..++.|+|. |..+.++ .+.. . ...++.++..+|+.+.+.
T Consensus 86 sP~y~---~~~~-~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 86 SPTRF---GGAT-SQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEET---TEEC-HHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred cCccc---cCcc-HHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 99653 2233 457778876 3343332 2221 1 247888899999988875
No 17
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=80.85 E-value=7.7 Score=34.09 Aligned_cols=104 Identities=14% Similarity=0.037 Sum_probs=62.9
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHhCCceEEEecCCCCCc---------------ccccccccccCEEEEeCCCCCcC
Q 013791 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNI---------------GLQRYGQYLYDALVLFCPSVERF 92 (436)
Q Consensus 30 ~r~LVl~d~~~~--~~~~S~f~~~L~~rGf~v~~~~~~d~~~---------------~L~~~ge~~yd~LII~~p~~~~~ 92 (436)
.|+||++-+..- +..-..+.+.|++.|++++.....+... .........+|.|||..|.--
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-- 83 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRF-- 83 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBT--
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhc--
Confidence 489999987521 2233357788888999998765444100 011223346799999999654
Q ss_pred CCCCCHHHHHHHHHC-----------CCcEEEEe--CC--CC----cHHHHHHHHHcCceecCC
Q 013791 93 GGSIDVASIVDFVDS-----------GHDLIVAA--DS--NA----SDLIREVATECGVDFDED 137 (436)
Q Consensus 93 ~~~l~~~~L~~Fvd~-----------GGNiLi~~--~~--~~----~~~lr~ll~ElGI~~~~~ 137 (436)
+.+ +..++.|+|. |..+.+.+ +. +. ...++.++.++|+.+.+.
T Consensus 84 -~~~-~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 84 -GNM-ASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp -TBC-CHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred -cCc-cHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 223 4567777775 34444333 21 11 135778888999998875
No 18
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=80.33 E-value=8.8 Score=32.04 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=58.8
Q ss_pred eEEEEEcCccc--ccchhHHHHHHHhCCceEEEecCCCCCcccccccccc-cCEEEEeCCCCCcCCCC-CCHHHHHHHHH
Q 013791 31 RVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYL-YDALVLFCPSVERFGGS-IDVASIVDFVD 106 (436)
Q Consensus 31 r~LVl~d~~~~--~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~-yd~LII~~p~~~~~~~~-l~~~~L~~Fvd 106 (436)
|++|++-+..- +.--..+.+.|+++|++++....++.+.. .... ||.+|+..|..- . +. .-+..+.+|++
T Consensus 2 ki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~----~l~~~~d~ii~~~p~y~-~-g~~~~p~~~~~fl~ 75 (147)
T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAG----GLFEGFDLVLLGCSTWG-D-DSIELQDDFIPLFD 75 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCST----TTTTTCSEEEEEECEEC-S-SSCEECTTTHHHHH
T ss_pred eEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHH----HhcCcCCEEEEEeCCCC-C-CCcCCChhHHHHHH
Confidence 78899976521 22223456678888999987644433211 1234 799999998762 1 11 01234555655
Q ss_pred C-------CCcEEEEeC--C---CC---cHHHHHHHHHcCceecCC
Q 013791 107 S-------GHDLIVAAD--S---NA---SDLIREVATECGVDFDED 137 (436)
Q Consensus 107 ~-------GGNiLi~~~--~---~~---~~~lr~ll~ElGI~~~~~ 137 (436)
. |-.+.+.+. . .. ...++..++++|...-..
T Consensus 76 ~l~~~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 121 (147)
T 1f4p_A 76 SLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQD 121 (147)
T ss_dssp TGGGSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSC
T ss_pred HHHhcccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhc
Confidence 3 444444332 1 11 367888888999987664
No 19
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=78.91 E-value=3.9 Score=44.18 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=56.0
Q ss_pred CCCCeEEEEEcCccc---------------ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCc
Q 013791 27 PTDRRVLVLVDDFAI---------------KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER 91 (436)
Q Consensus 27 ~~~~r~LVl~d~~~~---------------~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~ 91 (436)
....++-||+|..+. .+....+.+.|.++|..+++..+++ .|. .|+.||+ |..-.
T Consensus 394 ~~~a~VAil~d~~s~wa~~~~~~~~~~~~y~~~~~~~y~aL~~~gi~vD~v~~~~---dL~-----~Yklvv~--P~~~~ 463 (675)
T 3tty_A 394 RSEAKVAVMYDWENRWALELSSGPSIALNYVNEVHKYYDALYKQNIQTDMISVEE---DLS-----KYKVVIA--PVMYM 463 (675)
T ss_dssp BCCCSEEEECCHHHHHHHHHCCCSBTTCCHHHHHHHHHHHHHTTTCCEEEECTTS---CCT-----TCSEEEE--TTCCB
T ss_pred CCCCCEEEEEchhhhhhhhcccCCCccccHHHHHHHHHHHHHHcCceEEEecCcC---Ccc-----cCCEEEE--eccEe
Confidence 346788888875441 0123468889999999999987664 233 4677665 54443
Q ss_pred CCCCCCHHHHHHHHHCCCcEEEEeCCC
Q 013791 92 FGGSIDVASIVDFVDSGHDLIVAADSN 118 (436)
Q Consensus 92 ~~~~l~~~~L~~Fvd~GGNiLi~~~~~ 118 (436)
+ +.-..+.|.+|+++||++++..-++
T Consensus 464 ~-~~~~~~~L~~yV~~GG~lv~t~~sG 489 (675)
T 3tty_A 464 V-KPGFAERVERFVAQGGTFVTTFFSG 489 (675)
T ss_dssp C-CTTHHHHHHHHHHTTCEEEEETTCS
T ss_pred c-CHHHHHHHHHHHhcCCEEEEEccCC
Confidence 4 3345699999999999999776443
No 20
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=78.46 E-value=5.9 Score=39.27 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCeEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 29 DRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 29 ~~r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
-.|+++++-+.. .+..-..+.+.|+++|++++.....+.++.-.......||.+||.+|.-. +..+. .+++|++
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~---~~~~~-~~k~fld 331 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLN---NTMMP-SVAAALN 331 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBT---TBCCH-HHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccC---cCchH-HHHHHHH
Confidence 468999997752 23333457778888999998765544432211123446799999999654 33444 3666665
Q ss_pred --------CCCcEEEEeC-C---CCcHHHHHHHHH-cCceecCC
Q 013791 107 --------SGHDLIVAAD-S---NASDLIREVATE-CGVDFDED 137 (436)
Q Consensus 107 --------~GGNiLi~~~-~---~~~~~lr~ll~E-lGI~~~~~ 137 (436)
+|-.+.+.+. . ...+.++.++.+ +|..+...
T Consensus 332 ~l~~~~~~~~K~~~~~~t~g~~~~a~~~l~~~l~~~~g~~~~~~ 375 (414)
T 2q9u_A 332 YVRGLTLIKGKPAFAFGAFGWSNRAVPDIVAELRDGCKADVYDE 375 (414)
T ss_dssp HHHHHTTTTTSBEEEEEEESSSCCHHHHHHHHHHHTSCCBCCCS
T ss_pred HHHhhcccCCCEEEEEEecCCCchhHHHHHHHHHhhcCcEEccC
Confidence 3555554432 1 124678899999 99988765
No 21
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=78.22 E-value=4.5 Score=39.86 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCCeEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHH
Q 013791 28 TDRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFV 105 (436)
Q Consensus 28 ~~~r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fv 105 (436)
...|+++++-+.. .+..-..+.+.|++.|.+++.....+.+..-.......||.+||..|.-. +..+. .+++|+
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~---~~~~~-~~k~~l 330 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIY---DEPYP-SVGDLL 330 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEET---TEECT-HHHHHH
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECcccc---ccchH-HHHHHH
Confidence 3578999997642 23333456777888999998876665543322223456799999999654 22333 356666
Q ss_pred H----------CCCcEEEEeC-C---CCcHHHHHHHHHcCceecC
Q 013791 106 D----------SGHDLIVAAD-S---NASDLIREVATECGVDFDE 136 (436)
Q Consensus 106 d----------~GGNiLi~~~-~---~~~~~lr~ll~ElGI~~~~ 136 (436)
+ +|-.+.+.+. . ...+.++.++.++|..+..
T Consensus 331 d~l~~~~~~~l~~k~~~~~~~~g~~~~a~~~l~~~l~~~g~~~~~ 375 (404)
T 2ohh_A 331 MYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVAC 375 (404)
T ss_dssp HHHHHHCGGGTCCEEEEEEEEESSSCCHHHHHHHHHHHTTEEEEE
T ss_pred HHhhhccccccCCCEEEEEEecCCCChhHHHHHHHHHHCCCEEEe
Confidence 4 2334443332 1 2246889999999988765
No 22
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=77.42 E-value=4.5 Score=36.09 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=64.8
Q ss_pred eEEEEEcCccc----ccchhHHHHH-HHhCCceEEEecCCCCCc-------------ccccccccccCEEEEeCCCCCcC
Q 013791 31 RVLVLVDDFAI----KSSHSLYFGS-LTSRGFQLEFKLADDPNI-------------GLQRYGQYLYDALVLFCPSVERF 92 (436)
Q Consensus 31 r~LVl~d~~~~----~~~~S~f~~~-L~~rGf~v~~~~~~d~~~-------------~L~~~ge~~yd~LII~~p~~~~~ 92 (436)
|+|+++-+... +..-..+.+. |+++|.+++.....+..+ .-.......+|.||+..|.-.
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~-- 81 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYK-- 81 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBT--
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccC--
Confidence 68888877421 2222335567 888899998764443321 001122345799999999654
Q ss_pred CCCCCHHHHHHHHHC-------CCcEEEEeCCC-Cc------HHHHHHHHHcCceecCCCCeEEEe
Q 013791 93 GGSIDVASIVDFVDS-------GHDLIVAADSN-AS------DLIREVATECGVDFDEDPAAMVID 144 (436)
Q Consensus 93 ~~~l~~~~L~~Fvd~-------GGNiLi~~~~~-~~------~~lr~ll~ElGI~~~~~~~~~VvD 144 (436)
+.+ +..++.|+|. |..+.+++..+ .. ..++.++..+|+.+.+. +..+.+
T Consensus 82 -~~~-p~~lK~~ld~l~~~~~~gK~~~~~~tgg~~~~~~a~~~~l~~~l~~~g~~~v~~-~v~~~~ 144 (197)
T 2vzf_A 82 -ASY-TGLLKAFLDILPQFALAGKAALPLATGGSPAHVLALDYGLRPVLHSMGVRHVVQ-SFFLVQ 144 (197)
T ss_dssp -TBC-CHHHHHHHTTSCTTTTTTCEEEEEEEESSGGGGGHHHHTHHHHHHTTTCSEECC-CEEEES
T ss_pred -CCC-CHHHHHHHHhccccccCCCEEEEEEECCCcchhhHHHHHHHHHHHHcCCEeccc-eEEEec
Confidence 223 3557777774 44455433211 11 25899999999999886 544443
No 23
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=74.05 E-value=11 Score=33.13 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=62.1
Q ss_pred CeEEEEEcCccc-ccchhHHHHHHHhCCceEEEecCCCCCc----------------cc-ccccccccCEEEEeCCCCCc
Q 013791 30 RRVLVLVDDFAI-KSSHSLYFGSLTSRGFQLEFKLADDPNI----------------GL-QRYGQYLYDALVLFCPSVER 91 (436)
Q Consensus 30 ~r~LVl~d~~~~-~~~~S~f~~~L~~rGf~v~~~~~~d~~~----------------~L-~~~ge~~yd~LII~~p~~~~ 91 (436)
.|+||++-+.+. +..-..+.+.|++.|.+++.....+. + .+ .......+|.|||.+|.--
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y~- 82 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRY- 82 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBT-
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHh-CChhhhhccCCCcccccccccHHHHHhCCEEEEECCccc-
Confidence 489999987111 22233467778888999987654443 1 01 0223345799999999654
Q ss_pred CCCCCCHHHHHHHHHC-----------CCcEEEEe--CC---CC---cHHHHHHHHHcCceecCC
Q 013791 92 FGGSIDVASIVDFVDS-----------GHDLIVAA--DS---NA---SDLIREVATECGVDFDED 137 (436)
Q Consensus 92 ~~~~l~~~~L~~Fvd~-----------GGNiLi~~--~~---~~---~~~lr~ll~ElGI~~~~~ 137 (436)
+.++ ..++.|+|. |..+.+.+ +. +. .+.++.++..+|+.+.+.
T Consensus 83 --~~~~-~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 83 --GNMA-GGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp --TBCC-HHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred --cCcc-HHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 2233 456777775 33343322 22 12 346888999999998875
No 24
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=73.68 E-value=7.2 Score=33.80 Aligned_cols=109 Identities=10% Similarity=0.030 Sum_probs=59.1
Q ss_pred cCCCCCCeEEEEEcCccc--ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCC-CcCCCCCCHHH
Q 013791 24 PENPTDRRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVAS 100 (436)
Q Consensus 24 ~~~~~~~r~LVl~d~~~~--~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~-~~~~~~l~~~~ 100 (436)
+.+....|++|+|.+..- +.-=....+.|.++|++++....++.+. .....||.+||..|.. ..-.+ -..+.
T Consensus 4 ~~~~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~----~~l~~~d~ii~g~pt~g~G~~p-~~~~~ 78 (167)
T 1ykg_A 4 APAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKF----KQIASEKLLIVVTSTQGEGEPP-EEAVA 78 (167)
T ss_dssp --------CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCG----GGGGGCSEEEEEEECBGGGBCC-GGGHH
T ss_pred CCCCCCCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCH----HHhccCCeEEEEEcccCCCcCC-hhHHH
Confidence 344445689999977522 2223345667888899887664444321 1223579999998876 32111 12355
Q ss_pred HHHHHHC-------CCcEEEEe-C-C------CCcHHHHHHHHHcCceecCC
Q 013791 101 IVDFVDS-------GHDLIVAA-D-S------NASDLIREVATECGVDFDED 137 (436)
Q Consensus 101 L~~Fvd~-------GGNiLi~~-~-~------~~~~~lr~ll~ElGI~~~~~ 137 (436)
+.+.+.. |-.+.+.+ + . .....+...++++|......
T Consensus 79 f~~~l~~~~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~ 130 (167)
T 1ykg_A 79 LHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLD 130 (167)
T ss_dssp HHHHHTSTTCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSC
T ss_pred HHHHHHhccccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 5565543 33344443 2 1 12467888899999987654
No 25
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=71.71 E-value=17 Score=31.74 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=60.7
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHh-CCceEEEecCCCCC---------------cccccccccccCEEEEeCCCCCcC
Q 013791 31 RVLVLVDDFA--IKSSHSLYFGSLTS-RGFQLEFKLADDPN---------------IGLQRYGQYLYDALVLFCPSVERF 92 (436)
Q Consensus 31 r~LVl~d~~~--~~~~~S~f~~~L~~-rGf~v~~~~~~d~~---------------~~L~~~ge~~yd~LII~~p~~~~~ 92 (436)
|+||++-+.. .+..-..+.+.|++ +|.+++.....+.. ..........+|.||+..|.--
T Consensus 3 kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-- 80 (198)
T 3b6i_A 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRF-- 80 (198)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEET--
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChhc--
Confidence 7899997741 12333457778888 89999876554420 0011334456799999999653
Q ss_pred CCCCCHHHHHHHHHC-----------CCcEEEEe--CC-CC-c---HHHHHHHHHcCceecCC
Q 013791 93 GGSIDVASIVDFVDS-----------GHDLIVAA--DS-NA-S---DLIREVATECGVDFDED 137 (436)
Q Consensus 93 ~~~l~~~~L~~Fvd~-----------GGNiLi~~--~~-~~-~---~~lr~ll~ElGI~~~~~ 137 (436)
+.+ +..++.|+|. |..+.+.+ +. +. . ..++.++.++|+.+.+.
T Consensus 81 -~~~-~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~g~~~~~l~~l~~~l~~~g~~~v~~ 141 (198)
T 3b6i_A 81 -GNM-SGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPI 141 (198)
T ss_dssp -TEE-CHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSSTTHHHHHHHHHHHHHHTTCEECCC
T ss_pred -CCc-hHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCCccHHHHHHHHHHHHHHCCcEEECC
Confidence 223 3456667664 33444333 22 11 1 34556777889988875
No 26
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=69.57 E-value=19 Score=32.21 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCCeEEEEEcCcc-c-ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHH
Q 013791 28 TDRRVLVLVDDFA-I-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFV 105 (436)
Q Consensus 28 ~~~r~LVl~d~~~-~-~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fv 105 (436)
...+++|+|.+.. . +.-=..+.+.|.++|++++....++.. .....||.+||..|....= ..-+...+.+++
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~-----~~l~~~d~vi~g~~Ty~G~-~p~~~~~fl~~L 93 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA-----GNLPREGAVLIVTASYNGH-PPDNAKQFVDWL 93 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST-----TCCCSSSEEEEEECCBTTB-CCTTTHHHHHHH
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhh-----hhhhhCCeEEEEEeecCCC-cCHHHHHHHHHH
Confidence 4688999998752 2 222234667788889998876544421 1234579999998876311 112446677777
Q ss_pred HC-------CCcEEEEe--CCCC-------cHHHHHHHHHcCceecCC
Q 013791 106 DS-------GHDLIVAA--DSNA-------SDLIREVATECGVDFDED 137 (436)
Q Consensus 106 d~-------GGNiLi~~--~~~~-------~~~lr~ll~ElGI~~~~~ 137 (436)
+. |-.+-+.+ +..- ...+...++++|...-..
T Consensus 94 ~~~~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~ 141 (191)
T 1bvy_F 94 DQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIAD 141 (191)
T ss_dssp HTCCSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEE
T ss_pred HhccchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeec
Confidence 53 22333433 2222 367889999999876553
No 27
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=68.78 E-value=19 Score=31.52 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=59.1
Q ss_pred CeEEEEEcCcc--cccchhHHHHHHHh-CCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 30 RRVLVLVDDFA--IKSSHSLYFGSLTS-RGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~f~~~L~~-rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
.|+||++-+.. .+..-..+.+.|++ .|.+++.....+.+. .....+|.||+.+|.-. +.++ ..+++|++
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~----~~l~~aD~ii~gsP~y~---g~~~-~~lk~fld 76 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATK----EDVLWADGLAVGSPTNM---GLVS-WKMKRFFD 76 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCH----HHHHHCSEEEEEEECBT---TBCC-HHHHHHHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCH----HHHHhCCEEEEEeCccC---CcCC-HHHHHHHH
Confidence 47899997742 12233346777888 899998876655431 22335699999999763 2233 35666766
Q ss_pred ----------CCCcEEEEeC---CC--CcH---HHHHHHHHcCceecCC
Q 013791 107 ----------SGHDLIVAAD---SN--ASD---LIREVATECGVDFDED 137 (436)
Q Consensus 107 ----------~GGNiLi~~~---~~--~~~---~lr~ll~ElGI~~~~~ 137 (436)
+|..+.+.+. .. ... .+...+.++|+.+...
T Consensus 77 ~~~~~~~~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~~~~~ 125 (188)
T 2ark_A 77 DVLGDLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGV 125 (188)
T ss_dssp HTGGGTTTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCE
T ss_pred HHhhhhHHHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcEEeCC
Confidence 3444444332 11 112 3444455789887763
No 28
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=68.42 E-value=23 Score=34.58 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=64.2
Q ss_pred CCeEEEEEcCccc--ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013791 29 DRRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 29 ~~r~LVl~d~~~~--~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd 106 (436)
..|++|++-+..- +..-..+.+.|++.|.+++.....+.+..-.......||.+|+-.|.-- +...+ .+.+|++
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~---~~~~~-~~~~~l~ 327 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHN---NGILP-YVAGTLQ 327 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBT---TBCCH-HHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccC---CCchH-HHHHHHH
Confidence 5899999977521 2223346677888999988765554322211112246799999888653 22333 4666665
Q ss_pred C-------CCcEEEEeCC-C---CcHHHHHHHHHcCceecCC
Q 013791 107 S-------GHDLIVAADS-N---ASDLIREVATECGVDFDED 137 (436)
Q Consensus 107 ~-------GGNiLi~~~~-~---~~~~lr~ll~ElGI~~~~~ 137 (436)
. |..+.+.+.. . ..+.++..+.++|..+-..
T Consensus 328 ~l~~~~l~~k~~~~f~t~g~~~~a~~~l~~~l~~~G~~~~~~ 369 (402)
T 1e5d_A 328 YIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPAT 369 (402)
T ss_dssp HHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSC
T ss_pred HhhhcccCCCEEEEEEcCCCccHHHHHHHHHHHHCCCEEecC
Confidence 3 4455544432 2 2467889999999988764
No 29
>3pjl_A 34 kDa membrane antigen; IG fold, metal binding, human lactoferrin, membrane protein; 1.70A {Treponema pallidum} PDB: 3pjn_A
Probab=68.16 E-value=21 Score=32.69 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=51.2
Q ss_pred CCceEEEEEEEEEeC--------CeeeecccCCeEEEEEEeC--ceEeecc---ccCCCceEEEEEecCCceeeeEEEEe
Q 013791 313 NDDLEYSVEIYEWSG--------TSWEPYVSDDVQVQFYMMS--PYVLKTL---STDQKGHYSAEFKVPDVYGVFQFKVE 379 (436)
Q Consensus 313 ~d~v~y~i~i~e~~~--------~~W~P~~~ddiQlEf~mld--P~~R~~L---~~~~~~~y~~~f~~PD~hGvf~f~v~ 379 (436)
+.+|+.+.+|+-..+ |.|+||- .|..|++..| .-..-+| ...+.-.|-.++|+|+-=|-|+-++.
T Consensus 93 ~sDiHLEADIhA~~~~n~~Gf~~G~wvPYL--tV~y~Itk~d~~~v~eGtfmPMvAsDGPHYGdNVKL~~G~G~Y~vt~~ 170 (212)
T 3pjl_A 93 EADCHIEADIHANEAGKDLGYGVGDFVPYL--RVVAFLQKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVRFE 170 (212)
T ss_dssp TCSEEEEEEEEECGGGGGGTCCTTCBCCSC--EEEEEEEETTCCCCEEEECEEEEETTEEEEEEEECCTTCSEEEEEEEE
T ss_pred hCCeEEEEeccccccCCcccccCCCCCcCc--eeEEEEEeCCCCeEEEeeccccccCcCCccceeeccCCCCccEEEEEE
Confidence 357999999998853 7999995 6888888754 3333332 23445579999999877799988877
Q ss_pred eeecc
Q 013791 380 YQRLG 384 (436)
Q Consensus 380 Y~R~G 384 (436)
..-|+
T Consensus 171 I~pPs 175 (212)
T 3pjl_A 171 IAAPS 175 (212)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 77664
No 30
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=67.27 E-value=30 Score=37.44 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=68.0
Q ss_pred CCCCCeEEEEEcCc-ccccchhHHHHHHHhCCceEEEecCCC---CCcccccccccccCEEEEeCCCC---------CcC
Q 013791 26 NPTDRRVLVLVDDF-AIKSSHSLYFGSLTSRGFQLEFKLADD---PNIGLQRYGQYLYDALVLFCPSV---------ERF 92 (436)
Q Consensus 26 ~~~~~r~LVl~d~~-~~~~~~S~f~~~L~~rGf~v~~~~~~d---~~~~L~~~ge~~yd~LII~~p~~---------~~~ 92 (436)
+..+.|++||+.+- .+........+.|++.|.++....++. .+..+..-..-.||.|||-.... +.+
T Consensus 534 ~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~L 613 (688)
T 3ej6_A 534 TIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPL 613 (688)
T ss_dssp CCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTT
T ss_pred CccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhh
Confidence 34578999999765 455677788999999999999987754 23334444566789999955432 223
Q ss_pred CCCCCH-HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceec
Q 013791 93 GGSIDV-ASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFD 135 (436)
Q Consensus 93 ~~~l~~-~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~ 135 (436)
-.+-.+ +-+++|.+.|.=|-.... -..+|.+.||...
T Consensus 614 r~~~~a~~fV~e~~~hgKpIAAIch------gp~lL~~AGI~~~ 651 (688)
T 3ej6_A 614 FPAGRPSQILTDGYRWGKPVAAVGS------AKKALQSIGVEEK 651 (688)
T ss_dssp SCTTHHHHHHHHHHHTTCCEEEEGG------GHHHHHHTTCCSS
T ss_pred ccCHHHHHHHHHHHHcCCEEEEeCc------cHHHHHHcCCCCC
Confidence 211122 556777777775553321 1267888999754
No 31
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=67.18 E-value=43 Score=27.83 Aligned_cols=101 Identities=7% Similarity=-0.033 Sum_probs=58.9
Q ss_pred CeEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCC-CcCCCCCCHHHHHHHHH
Q 013791 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVDFVD 106 (436)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~-~~~~~~l~~~~L~~Fvd 106 (436)
.|++|+|.+.. .+.-=....+.|.++|+++......+ ......||.+||..|.. ..- .+-..+.+.+.+.
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~------~~~l~~~d~vi~g~pt~g~g~-~p~~~~~f~~~l~ 74 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPL------LEDLPASGIWLVISSTHGAGD-IPDNLSPFYEALQ 74 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCTT------SCSSCSEEEEEEECCTTTTCC-TTSSCHHHHHHHH
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCCC------HHHcccCCeEEEEECccCCCC-CChhHHHHHHHHH
Confidence 36889997642 23333356677888899987642211 11234579999999876 321 1123355555553
Q ss_pred -----CCCcEE-EEeC--------CCCcHHHHHHHHHcCceecCC
Q 013791 107 -----SGHDLI-VAAD--------SNASDLIREVATECGVDFDED 137 (436)
Q Consensus 107 -----~GGNiL-i~~~--------~~~~~~lr~ll~ElGI~~~~~ 137 (436)
-.|..+ +.+- ......+...++++|......
T Consensus 75 ~~~~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (147)
T 2hna_A 75 EQKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGE 119 (147)
T ss_dssp HHCCCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSS
T ss_pred hhccccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeee
Confidence 123333 4331 134568999999999887654
No 32
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=67.01 E-value=28 Score=31.22 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=45.8
Q ss_pred CCeEEEEEcCccc---c-----cchhHHHHHHHhCCceEEEecCCCC-CcccccccccccCEEEEeCCCCCcCCCCCCHH
Q 013791 29 DRRVLVLVDDFAI---K-----SSHSLYFGSLTSRGFQLEFKLADDP-NIGLQRYGQYLYDALVLFCPSVERFGGSIDVA 99 (436)
Q Consensus 29 ~~r~LVl~d~~~~---~-----~~~S~f~~~L~~rGf~v~~~~~~d~-~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~ 99 (436)
..|+|||.-++.. + ..-..+.+.|+++|++++.....+. ++.-........|.|||..|--- + --+.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y~-~---s~pa 87 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWW-M---GAPW 87 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECBT-T---BCCH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEECCccc-c---CCCH
Confidence 4689999866542 1 1223577778888999998766542 22222333445599999999654 2 1345
Q ss_pred HHHHHHH
Q 013791 100 SIVDFVD 106 (436)
Q Consensus 100 ~L~~Fvd 106 (436)
.|+.|+|
T Consensus 88 ~LK~~iD 94 (204)
T 2amj_A 88 TVKKYID 94 (204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6777777
No 33
>3lzq_A P19 protein; copper binding, iron transport, iron uptake, P19 delition, T protein; 1.41A {Campylobacter jejuni} PDB: 3lzn_A 3lzo_A 3lzp_A 3lzl_A 3lzr_A
Probab=65.57 E-value=26 Score=30.83 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=50.3
Q ss_pred eCCceEEEEEEEEEeC-------CeeeecccCCeEEEEEEeC--ceEeecc---ccCCCceEEEEEecC------Cceee
Q 013791 312 INDDLEYSVEIYEWSG-------TSWEPYVSDDVQVQFYMMS--PYVLKTL---STDQKGHYSAEFKVP------DVYGV 373 (436)
Q Consensus 312 i~d~v~y~i~i~e~~~-------~~W~P~~~ddiQlEf~mld--P~~R~~L---~~~~~~~y~~~f~~P------D~hGv 373 (436)
=..+|+.+.+|+...+ |.|+||- .|..|++..| .-.+-+| ...+.-.|-.++|+| +-=|-
T Consensus 37 ~~sdiHlEaDIha~~~n~~Gf~~G~wvPyL--~v~y~i~~~~~~~v~~g~~mPMvA~dGpHYG~NvkL~~~~~~~~G~G~ 114 (159)
T 3lzq_A 37 SLADIHLEADIHALKNNPNGFPEGFWMPYL--TIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGN 114 (159)
T ss_dssp GGCSEEEEEEEEECTTCTTCCCTTCBCCSC--EEEEEEEETTTCCEEEEECEEEEETTEEEEEEEECSTTCTTCCCSSEE
T ss_pred hhCCeEEEEecccccCCCCcccCCcCCcCc--eEEEEEEeCCCCeEEEeecceeecCCCCccccceeccccccCCCCCcc
Confidence 3578999999999865 4999995 6888888654 3344443 223445788889998 66788
Q ss_pred eEEEEeeeecc
Q 013791 374 FQFKVEYQRLG 384 (436)
Q Consensus 374 f~f~v~Y~R~G 384 (436)
|+-++...-|+
T Consensus 115 Y~v~~~I~pP~ 125 (159)
T 3lzq_A 115 YELTFYISNPE 125 (159)
T ss_dssp EEEEEEEECGG
T ss_pred EEEEEEECCcc
Confidence 87777766554
No 34
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=62.77 E-value=38 Score=28.66 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=55.2
Q ss_pred HHHHHHHhCCceEEEecCCCCCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCC
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA 119 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~~ 119 (436)
...+.|.+.||++--..|+.+.+ ++.+- +..-|.+||+-|... -++.+.+-++.|-..+|......
T Consensus 40 ~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l-~~~vDlvvi~vp~~~------~~~vv~~~~~~gi~~i~~~~g~~ 112 (144)
T 2d59_A 40 IVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDI-PDKIEVVDLFVKPKL------TMEYVEQAIKKGAKVVWFQYNTY 112 (144)
T ss_dssp HHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGC-SSCCSEEEECSCHHH------HHHHHHHHHHHTCSEEEECTTCC
T ss_pred HHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHc-CCCCCEEEEEeCHHH------HHHHHHHHHHcCCCEEEECCCch
Confidence 45567899999987676664322 11111 112488888776522 45667777888877777665555
Q ss_pred cHHHHHHHHHcCceec
Q 013791 120 SDLIREVATECGVDFD 135 (436)
Q Consensus 120 ~~~lr~ll~ElGI~~~ 135 (436)
.+.+.+.+++.|+.+-
T Consensus 113 ~~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 113 NREASKKADEAGLIIV 128 (144)
T ss_dssp CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCEEE
Confidence 7889999999999887
No 35
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=62.69 E-value=14 Score=32.65 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=50.9
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCC------------cccccccccccCEEEEeCCC-CCcC
Q 013791 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN------------IGLQRYGQYLYDALVLFCPS-VERF 92 (436)
Q Consensus 26 ~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~------------~~L~~~ge~~yd~LII~~p~-~~~~ 92 (436)
..++++++|++.+.-+...+..-.+-|++.||+++...++... ..+.+-....||.|||-... .+.+
T Consensus 5 ~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l 84 (177)
T 4hcj_A 5 GKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITL 84 (177)
T ss_dssp CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGG
T ss_pred ccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHH
Confidence 3456777777755444566778889999999999987655321 22334445678998885321 1223
Q ss_pred CCCCCH-HHHHHHHHCCCc
Q 013791 93 GGSIDV-ASIVDFVDSGHD 110 (436)
Q Consensus 93 ~~~l~~-~~L~~Fvd~GGN 110 (436)
..+-.. +-|++|.++|.-
T Consensus 85 ~~~~~~~~~l~~~~~~~k~ 103 (177)
T 4hcj_A 85 WDDWRTQGLAKLFLDNQKI 103 (177)
T ss_dssp TTCHHHHHHHHHHHHTTCE
T ss_pred hhCHHHHHHHHHHHHhCCE
Confidence 221111 455666666653
No 36
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=62.53 E-value=18 Score=38.35 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=53.5
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce----EeeccccC-CCceEEEEEecCCc--eeeeEEEE
Q 013791 306 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTLSTD-QKGHYSAEFKVPDV--YGVFQFKV 378 (436)
Q Consensus 306 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~----~R~~L~~~-~~~~y~~~f~~PD~--hGvf~f~v 378 (436)
+...||-.|.|.|.+=+- +.++.|.. +. +.+...||- .|..++.+ ..|.|+..|+||+. -|.|+.++
T Consensus 113 DR~iYrPGqtV~~r~i~~---d~~~~p~~-~~--v~v~l~dP~g~~i~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~I~v 186 (645)
T 2hr0_A 113 DKTIYTPGSTVLYRIFTV---NHKLLPVG-RT--VMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRA 186 (645)
T ss_dssp SCSBCCTTSEEEEEEEEE---CTTSCBCC-CE--EEEEEECTTSCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEEEEE
T ss_pred CCccCCCCCEEEEEEEEE---CCCCcccC-ce--EEEEEECCCCCEEEEEEeeccccCCeEEEEEECCCccccccEEEEE
Confidence 455799999999998764 35688854 43 455667995 34455544 78999999999997 79999999
Q ss_pred eee
Q 013791 379 EYQ 381 (436)
Q Consensus 379 ~Y~ 381 (436)
.+.
T Consensus 187 ~~~ 189 (645)
T 2hr0_A 187 YYE 189 (645)
T ss_dssp EET
T ss_pred EEC
Confidence 884
No 37
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=62.52 E-value=20 Score=35.03 Aligned_cols=106 Identities=8% Similarity=0.081 Sum_probs=61.6
Q ss_pred CCeEEEEEcCcc--cccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCH--HHHHHH
Q 013791 29 DRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDV--ASIVDF 104 (436)
Q Consensus 29 ~~r~LVl~d~~~--~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~--~~L~~F 104 (436)
..++++++.+.. .+..-....+.|.+.|.+++.....+.+..-.......||.+||..|... +...+ +.+++.
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~---~~~~~~~~~~l~~ 327 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTIN---NDILPVVSPLLDD 327 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBT---TBCCGGGHHHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccC---ccchHHHHHHHHH
Confidence 468888887642 22333346677888899888654433322111112246799999888653 22233 333333
Q ss_pred HH----CCCcEEEEeCC----CCcHHHHHHHHHcCceecCC
Q 013791 105 VD----SGHDLIVAADS----NASDLIREVATECGVDFDED 137 (436)
Q Consensus 105 vd----~GGNiLi~~~~----~~~~~lr~ll~ElGI~~~~~ 137 (436)
+. +|..+.+.+.. .....++.++.++|+.+...
T Consensus 328 l~~~~~~~k~~~~~~s~g~~~~a~~~l~~~l~~~g~~~~~~ 368 (398)
T 1ycg_A 328 LVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAE 368 (398)
T ss_dssp HHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCS
T ss_pred HhccccCCCEEEEEEeCCCchHHHHHHHHHHHHCCeEEecC
Confidence 32 34444444321 22467999999999998875
No 38
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=62.40 E-value=14 Score=33.87 Aligned_cols=103 Identities=10% Similarity=0.215 Sum_probs=61.7
Q ss_pred eEEEEEcCccc----ccchhHHHHHHHhC-CceEEEecCCCCCccc------------------------ccccccccCE
Q 013791 31 RVLVLVDDFAI----KSSHSLYFGSLTSR-GFQLEFKLADDPNIGL------------------------QRYGQYLYDA 81 (436)
Q Consensus 31 r~LVl~d~~~~----~~~~S~f~~~L~~r-Gf~v~~~~~~d~~~~L------------------------~~~ge~~yd~ 81 (436)
|+||++.++.. ...-..+.+.|+++ |.+++.....|..+.. .......+|.
T Consensus 3 kIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (242)
T 1sqs_A 3 KIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDI 82 (242)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCE
Confidence 78888877532 22233467778877 9999886554432210 0111245699
Q ss_pred EEEeCCCCCcCCCCCCHHHHHHHHHC-----------CCcEEEEe--C-CC---CcHHHHHHHHHcCceecCC
Q 013791 82 LVLFCPSVERFGGSIDVASIVDFVDS-----------GHDLIVAA--D-SN---ASDLIREVATECGVDFDED 137 (436)
Q Consensus 82 LII~~p~~~~~~~~l~~~~L~~Fvd~-----------GGNiLi~~--~-~~---~~~~lr~ll~ElGI~~~~~ 137 (436)
|||..|.-- . .++ ..|+.|+|. |..+++++ + ++ ....++.++..+|+.+.+.
T Consensus 83 iI~~sP~y~-~--~~p-~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g~~~~~~~l~~~l~~~G~~~v~~ 151 (242)
T 1sqs_A 83 IIISSPVYL-Q--NVS-VDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGSDNVSEYLRDIFSYMGGQILHQ 151 (242)
T ss_dssp EEEEEEECS-S--SCC-HHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCCSCCHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEccccc-c--CCC-HHHHHHHHHHHHhccccccCCCEEEEEEeCCCCchhhHHHHHHHHHHHCCCeeeeE
Confidence 999999654 2 233 345666653 33444332 2 22 2467889999999998774
No 39
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=61.58 E-value=30 Score=29.16 Aligned_cols=84 Identities=18% Similarity=0.307 Sum_probs=54.9
Q ss_pred HHHHHHHhCCceEEEecCCCCCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCC
Q 013791 47 LYFGSLTSRGFQLEFKLADDPNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA 119 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~~~ 119 (436)
...+.|.+.||+|.-..|+.+.+ ++.+- ...-|.+||+-|. + .-.+.+.+-++.|=..+|....+.
T Consensus 32 ~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el-~~~vDlvii~vp~-~-----~v~~v~~~~~~~g~~~i~~~~~~~ 104 (138)
T 1y81_A 32 IILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVREL-PKDVDVIVFVVPP-K-----VGLQVAKEAVEAGFKKLWFQPGAE 104 (138)
T ss_dssp HHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGS-CTTCCEEEECSCH-H-----HHHHHHHHHHHTTCCEEEECTTSC
T ss_pred HHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHh-CCCCCEEEEEeCH-H-----HHHHHHHHHHHcCCCEEEEcCccH
Confidence 46677889999987776654322 11111 1124888887773 3 244566677777755565555556
Q ss_pred cHHHHHHHHHcCceecCC
Q 013791 120 SDLIREVATECGVDFDED 137 (436)
Q Consensus 120 ~~~lr~ll~ElGI~~~~~ 137 (436)
.+.+.+.+++.|+.+-..
T Consensus 105 ~~~l~~~a~~~Gi~~igp 122 (138)
T 1y81_A 105 SEEIRRFLEKAGVEYSFG 122 (138)
T ss_dssp CHHHHHHHHHHTCEEECS
T ss_pred HHHHHHHHHHCCCEEEcC
Confidence 788999999999988764
No 40
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=61.00 E-value=20 Score=31.40 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcc-----------------cccccccccCEEEEeCCC
Q 013791 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIG-----------------LQRYGQYLYDALVLFCPS 88 (436)
Q Consensus 26 ~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~-----------------L~~~ge~~yd~LII~~p~ 88 (436)
+....|++||+-+.-.........+-|+..||++++..++...+. +..-....||.|||-...
T Consensus 6 ~~~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~ 85 (190)
T 2vrn_A 6 DLTGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGT 85 (190)
T ss_dssp CCTTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCT
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCc
Confidence 345678888886655566777888999999999998877653221 111122478998886653
Q ss_pred --CCcCCCCC-CHHHHHHHHHCCCcEE
Q 013791 89 --VERFGGSI-DVASIVDFVDSGHDLI 112 (436)
Q Consensus 89 --~~~~~~~l-~~~~L~~Fvd~GGNiL 112 (436)
.+.+..+- -.+-|+++.++|.-|.
T Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~gk~i~ 112 (190)
T 2vrn_A 86 VNPDKLRLEEGAMKFVRDMYDAGKPIA 112 (190)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCEE
T ss_pred hhHHHHhhCHHHHHHHHHHHHcCCEEE
Confidence 12121111 1155666777776554
No 41
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=60.61 E-value=31 Score=37.36 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=66.7
Q ss_pred CCCCeEEEEEc--CcccccchhHHHHHHHhCCceEEEecCCCC---CcccccccccccCEEEEeCCC-------------
Q 013791 27 PTDRRVLVLVD--DFAIKSSHSLYFGSLTSRGFQLEFKLADDP---NIGLQRYGQYLYDALVLFCPS------------- 88 (436)
Q Consensus 27 ~~~~r~LVl~d--~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~---~~~L~~~ge~~yd~LII~~p~------------- 88 (436)
..+.|++||+. +..+........+.|++.|.+++...++.. +..+..-..-.||.|||-...
T Consensus 527 l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~ 606 (688)
T 2iuf_A 527 LDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP 606 (688)
T ss_dssp CTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred CCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence 44789999998 666677888999999999999998776542 223444456778998887653
Q ss_pred -----CCcCCCCCCH-HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 013791 89 -----VERFGGSIDV-ASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDE 136 (436)
Q Consensus 89 -----~~~~~~~l~~-~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~~ 136 (436)
.+.+-.+-.+ +-|+++.+.|.=|-.. ..+ + .+|.+.||.-.+
T Consensus 607 ~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAI-c~a-p----~vL~~aGi~~~d 654 (688)
T 2iuf_A 607 SAGSGASTLYPAGRPLNILLDAFRFGKTVGAL-GSG-S----DALESGQISSER 654 (688)
T ss_dssp CTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEE-GGG-H----HHHHHTTCCTTS
T ss_pred ccccchhhcccChHHHHHHHHHHHcCCEEEEE-Cch-H----HHHHHcCCCCCC
Confidence 1222221122 5666777666644432 221 1 367788996433
No 42
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=60.04 E-value=30 Score=30.30 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=56.6
Q ss_pred CeEEEEEcCcccccchhHHHHHHHh-CCceEEEecCCCCC------cc------cccccccccCEEEEeCCCCCcCCC-C
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTS-RGFQLEFKLADDPN------IG------LQRYGQYLYDALVLFCPSVERFGG-S 95 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~-rGf~v~~~~~~d~~------~~------L~~~ge~~yd~LII~~p~~~~~~~-~ 95 (436)
.|+++++-+.-.........+.|+. .||++++..++... +. +..-....||.|||-......+.. .
T Consensus 2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (188)
T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA 81 (188)
T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccH
Confidence 3677777554455666778889998 99999987766431 11 222222368998886543211211 1
Q ss_pred CCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 96 IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 96 l~~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
--.+-|+++.++|.-|. +...+ -.+|.+.|+
T Consensus 82 ~l~~~l~~~~~~~k~i~-aiC~G-----~~~La~aGl 112 (188)
T 2fex_A 82 DLGGLVKRFRDRDRLVA-GICAA-----ASALGGTGV 112 (188)
T ss_dssp CCHHHHHHHHHTTCEEE-EETHH-----HHHHHHTTT
T ss_pred HHHHHHHHHHHCCCEEE-EECHH-----HHHHHHCCC
Confidence 23467788877776443 32221 136677775
No 43
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=59.57 E-value=37 Score=29.43 Aligned_cols=103 Identities=13% Similarity=0.195 Sum_probs=59.9
Q ss_pred CeEEEEEcCccc-----ccchhHHHHHHHhCC--ceEEEecCCCCCccc-----------------------------cc
Q 013791 30 RRVLVLVDDFAI-----KSSHSLYFGSLTSRG--FQLEFKLADDPNIGL-----------------------------QR 73 (436)
Q Consensus 30 ~r~LVl~d~~~~-----~~~~S~f~~~L~~rG--f~v~~~~~~d~~~~L-----------------------------~~ 73 (436)
.|+|+++-++.. +..-..+.+.|+++| .+++.....+..+.. ..
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 81 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELI 81 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHH
Confidence 378888877642 122235777888876 899887655543210 01
Q ss_pred ccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH--------------------CCCcEEEEe-CCC---------CcHHH
Q 013791 74 YGQYLYDALVLFCPSVERFGGSIDVASIVDFVD--------------------SGHDLIVAA-DSN---------ASDLI 123 (436)
Q Consensus 74 ~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd--------------------~GGNiLi~~-~~~---------~~~~l 123 (436)
.....+|.|||..|--- + .++ ..|+.|+| +|..+++++ ..+ ....+
T Consensus 82 ~~l~~aD~iv~~~P~y~-~--~~p-~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l 157 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYN-F--NIP-TQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYL 157 (201)
T ss_dssp HHHHHCSEEEEECCCBT-T--BCC-HHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHH
T ss_pred HHHHhCCEEEEEeCccc-C--cCC-HHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHH
Confidence 12335699999999654 2 233 34455554 233454333 111 12458
Q ss_pred HHHHHHcCceecC
Q 013791 124 REVATECGVDFDE 136 (436)
Q Consensus 124 r~ll~ElGI~~~~ 136 (436)
+.++..+|+...+
T Consensus 158 ~~~l~~~G~~~~~ 170 (201)
T 1t5b_A 158 KVFLGFIGITDVN 170 (201)
T ss_dssp HHHHHHTTCCCEE
T ss_pred HHHHhhcCcceeE
Confidence 8899999998765
No 44
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=59.26 E-value=35 Score=29.01 Aligned_cols=99 Identities=9% Similarity=0.119 Sum_probs=55.1
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013791 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (436)
Q Consensus 30 ~r~LVl~d~~~~--~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd- 106 (436)
.|+||++-+..- +.-=..+.+.|... +++....++.+. .....||.+||..|.-- . + ..+..+.+|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~--~v~~~~~~~~~~----~~l~~~d~ii~g~p~y~-~-g-~~p~~~~~fl~~ 72 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND--VVTLHDVSQAEV----TDLNDYQYLIIGCPTLN-I-G-ELQSDWEGLYSE 72 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEETTTCCG----GGGGGCSEEEEEEEEET-T-T-EECHHHHHHHTT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC--CcEEEEcccCCH----HHHhhCCEEEEEEeeCC-C-C-cCCHHHHHHHHH
Confidence 478999977521 11112334444433 455544444322 12345799999988742 1 2 23355666765
Q ss_pred ------CCCcEEEEeC-CC------C---cHHHHHHHHHcCceecCC
Q 013791 107 ------SGHDLIVAAD-SN------A---SDLIREVATECGVDFDED 137 (436)
Q Consensus 107 ------~GGNiLi~~~-~~------~---~~~lr~ll~ElGI~~~~~ 137 (436)
+|..+.+.+. .. . ...++.++.++|..+...
T Consensus 73 l~~~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 119 (169)
T 1obo_A 73 LDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGY 119 (169)
T ss_dssp GGGCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCC
T ss_pred hhhcCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 3555555442 11 1 257888888889888764
No 45
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.87 E-value=37 Score=27.06 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=47.7
Q ss_pred ceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeC---ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 309 IYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS---PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 309 ~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mld---P~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
.++++...+|.|+-..-. |+=..+-.|.++++..--| .-+...+...++|+|.++|+.+. -|-|+..|.|.-
T Consensus 23 ~~~~g~~~~F~V~~~d~~-G~~~~~Gg~~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~-~G~y~i~V~~~g 97 (113)
T 2ds4_A 23 RAREKQTASFTLLCKDAA-GEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKE-PGVYTVWVCIKE 97 (113)
T ss_dssp EEETTCCEEEEEECBBTT-SSBCCCCCCCEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSS-SEEEEEEEEESS
T ss_pred ceecCCcEEEEEEEECCC-CCCcccCCceEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCC-CeEEEEEEEECC
Confidence 377888888888766532 3322333567777775443 12333444467899999998655 699999998863
No 46
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=58.34 E-value=19 Score=30.75 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=57.2
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCC------cc------cccccccccCEEEEeCCCC-CcCCCC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN------IG------LQRYGQYLYDALVLFCPSV-ERFGGS 95 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~------~~------L~~~ge~~yd~LII~~p~~-~~~~~~ 95 (436)
+.|+++++-+.-...+.....+.|+..||++++..++... +. +..-....||.|||-.... +.+..+
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLN 81 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccC
Confidence 4688888876666677888999999999999987765422 11 1121223589988855432 112111
Q ss_pred CC-HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 96 ID-VASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 96 l~-~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
-. .+-|+++.++|.-|. +...+. .+|.+.|+
T Consensus 82 ~~l~~~l~~~~~~~k~i~-aiC~G~-----~~La~aGl 113 (168)
T 3l18_A 82 EKAVMITRRMFEDDKPVA-SICHGP-----QILISAKV 113 (168)
T ss_dssp HHHHHHHHHHHHTTCCEE-EETTTH-----HHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEE-EECHhH-----HHHHHCCc
Confidence 11 145666777776554 333221 34556664
No 47
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=56.51 E-value=22 Score=28.26 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=26.2
Q ss_pred EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 349 VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 349 ~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
++..++..++|+|.++|+ |..-|.|+..|.|.-
T Consensus 53 ~~~~v~d~~dGty~V~Y~-p~~~G~y~i~V~~~g 85 (100)
T 3rgh_A 53 AEVYIQDHGDGTHTITYI-PLCPGAYTVTIKYGG 85 (100)
T ss_dssp CEEEEEECSSSEEEEEEE-CCSSEEEEEEEEETT
T ss_pred eEEEEEeCCCCEEEEEEE-eCCCeeEEEEEEECC
Confidence 445555567899999999 667799999999863
No 48
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=55.96 E-value=30 Score=30.13 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=61.0
Q ss_pred eEEEEEcCcccc----cchhHHHHHHHhC------CceEEEecCCCCCcc-------------------------ccccc
Q 013791 31 RVLVLVDDFAIK----SSHSLYFGSLTSR------GFQLEFKLADDPNIG-------------------------LQRYG 75 (436)
Q Consensus 31 r~LVl~d~~~~~----~~~S~f~~~L~~r------Gf~v~~~~~~d~~~~-------------------------L~~~g 75 (436)
|+||++-+.... ..-..+.+.|+++ |++++.....+..+. -....
T Consensus 2 kilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (191)
T 1t0i_A 2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRI 81 (191)
T ss_dssp EEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHH
T ss_pred eEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHH
Confidence 688888765321 2223466777776 799887533221110 01122
Q ss_pred ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC------CCcEEEEe-CC-C---CcHHHHHHHHHcCceecCC
Q 013791 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDS------GHDLIVAA-DS-N---ASDLIREVATECGVDFDED 137 (436)
Q Consensus 76 e~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~------GGNiLi~~-~~-~---~~~~lr~ll~ElGI~~~~~ 137 (436)
...+|.||+..|.-- ..+ +..|+.|+|. |..+++++ +. . ....++.++..+|+...+.
T Consensus 82 l~~aD~iI~~sP~y~---~~~-p~~lK~~iD~~~~~l~gK~~~~~~~G~~~~~~~~~~l~~~l~~~G~~~~~~ 150 (191)
T 1t0i_A 82 VNALDIIVFVTPQYN---WGY-PAALKNAIDRLYHEWHGKPALVVSYGGHGGSKCNDQLQEVLHGLKMNVIGG 150 (191)
T ss_dssp HHTCSEEEEEEECBT---TBC-CHHHHHHHHTCSTTTTTCEEEEEEEETTTTHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhCCEEEEEeceEC---CCC-CHHHHHHHHHHHhhcCCCEEEEEEeCCcchhhHHHHHHHHHHHCCCEEcce
Confidence 346799999999654 223 4568888885 44455433 22 1 1356888999999988773
No 49
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=55.87 E-value=39 Score=29.79 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=52.0
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCC-c-------c------cccccccccCEEEEeCCCC-CcC
Q 013791 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-I-------G------LQRYGQYLYDALVLFCPSV-ERF 92 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~-~-------~------L~~~ge~~yd~LII~~p~~-~~~ 92 (436)
...|++||+-+.....+.....+.|+..||++++..++... + . +..-....||.|||-.... +.+
T Consensus 22 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~~l 101 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYL 101 (193)
T ss_dssp CCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHH
T ss_pred cCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHHHh
Confidence 35688888866555667778899999999999988776532 1 1 1111234689988865421 112
Q ss_pred CCC-CCHHHHHHHHHCCCcEE
Q 013791 93 GGS-IDVASIVDFVDSGHDLI 112 (436)
Q Consensus 93 ~~~-l~~~~L~~Fvd~GGNiL 112 (436)
..+ --.+-|+++.++|.-|.
T Consensus 102 ~~~~~l~~~l~~~~~~gk~i~ 122 (193)
T 1oi4_A 102 RGDNRFVTFTRDFVNSGKPVF 122 (193)
T ss_dssp TTSHHHHHHHHHHHHTTCCEE
T ss_pred hhCHHHHHHHHHHHHcCCEEE
Confidence 110 11255667777776555
No 50
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=55.67 E-value=39 Score=28.67 Aligned_cols=100 Identities=11% Similarity=0.130 Sum_probs=54.1
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013791 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (436)
Q Consensus 30 ~r~LVl~d~~~~--~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd- 106 (436)
.|+||+|-+..- +.--..+.+.|... ++++....++.+ ......||.+||..|.-. . +. -+..+++|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~~----~~~l~~~d~ii~g~pty~-~-g~-~p~~~~~f~~~ 72 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE-SIVDLNDIANAD----ASDLNAYDYLIIGCPTWN-V-GE-LQSDWEGIYDD 72 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGGCC----GGGGGGCSEEEEECCEET-T-TE-ECHHHHHHGGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc-cceEEEEhhhCC----HhHHhhCCEEEEEecccC-C-Cc-CCHHHHHHHHH
Confidence 478999977521 22222344555444 556654333321 122345799999988643 1 21 2334555555
Q ss_pred ------CCCcEEEEe-C-C-----CC---cHHHHHHHHHcCceecCC
Q 013791 107 ------SGHDLIVAA-D-S-----NA---SDLIREVATECGVDFDED 137 (436)
Q Consensus 107 ------~GGNiLi~~-~-~-----~~---~~~lr~ll~ElGI~~~~~ 137 (436)
+|-.+.+.+ . . .. ...++.++.++|..+...
T Consensus 73 l~~~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 119 (169)
T 1czn_A 73 LDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGY 119 (169)
T ss_dssp GGGSCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCC
T ss_pred hhhhccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 244555444 2 1 11 357778888889887763
No 51
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=54.55 E-value=28 Score=30.55 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=63.1
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCC-CCcc------------cccccccccCEEEEeCCC--CCcCC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD-PNIG------------LQRYGQYLYDALVLFCPS--VERFG 93 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d-~~~~------------L~~~ge~~yd~LII~~p~--~~~~~ 93 (436)
.+|++|++-+.-+..+.....+-|+..||++++..++. ..+. +..-....||.|||-... ...+.
T Consensus 5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 84 (190)
T 4e08_A 5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMG 84 (190)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHH
T ss_pred CcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhh
Confidence 47899988766566777888999999999999987765 2211 222223468998885541 11121
Q ss_pred CCCC-HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCc
Q 013791 94 GSID-VASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINY 148 (436)
Q Consensus 94 ~~l~-~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~~~~~~~VvDhf~~ 148 (436)
.+-. .+-|+++.++|. .+.+...+. .+|.+-|+ .++ ..+.-|-..
T Consensus 85 ~~~~~~~~l~~~~~~~k-~i~aiC~G~-----~~La~aGl--L~g--~~~T~~~~~ 130 (190)
T 4e08_A 85 ESSLVGDLLRSQESGGG-LIAAICAAP-----TVLAKHGV--ASG--KSLTSYPSM 130 (190)
T ss_dssp HCHHHHHHHHHHHHTTC-EEEEETTTH-----HHHHHTTC--STT--CEECCCGGG
T ss_pred hCHHHHHHHHHHHHCCC-EEEEECHHH-----HHHHHCCC--cCC--CeEEeCcCH
Confidence 1001 144566666655 443443332 35667773 342 245555433
No 52
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=54.52 E-value=35 Score=30.12 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=60.0
Q ss_pred eEEEEEcCccc-ccch-----hHHHHHHHhCC--ceEEEecCC--CCCcccc----------------------------
Q 013791 31 RVLVLVDDFAI-KSSH-----SLYFGSLTSRG--FQLEFKLAD--DPNIGLQ---------------------------- 72 (436)
Q Consensus 31 r~LVl~d~~~~-~~~~-----S~f~~~L~~rG--f~v~~~~~~--d~~~~L~---------------------------- 72 (436)
|+|+++-++.. .... ..+.+.|+++| .+++..... +..+...
T Consensus 3 kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 82 (208)
T 2hpv_A 3 KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKV 82 (208)
T ss_dssp EEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHH
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhH
Confidence 78888876642 1233 35888899887 999987655 4332211
Q ss_pred ------cccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--------------------CCcEEEEe--C-CCC----
Q 013791 73 ------RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS--------------------GHDLIVAA--D-SNA---- 119 (436)
Q Consensus 73 ------~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~--------------------GGNiLi~~--~-~~~---- 119 (436)
......+|.|||..|--- + .+ +..|+.|+|. |..+++++ + +..
T Consensus 83 ~~~~~~~~~l~~aD~iv~~~P~y~-~--~~-pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~ 158 (208)
T 2hpv_A 83 ARFNELTDQFLSADKVVIANPMWN-L--NV-PTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDF 158 (208)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECBT-T--BC-CHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSH
T ss_pred HHHHHHHHHHHhCCEEEEEecccc-C--CC-CHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcch
Confidence 001235699999999654 2 22 3445666653 33444332 2 111
Q ss_pred -cHHHHHHHHHcCceecC
Q 013791 120 -SDLIREVATECGVDFDE 136 (436)
Q Consensus 120 -~~~lr~ll~ElGI~~~~ 136 (436)
...++.++..+|+...+
T Consensus 159 ~~~~l~~~~~~~G~~~~~ 176 (208)
T 2hpv_A 159 ASQYIKAILNFIGVDQVD 176 (208)
T ss_dssp HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCCCeee
Confidence 24578889999998765
No 53
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=53.38 E-value=25 Score=38.38 Aligned_cols=102 Identities=11% Similarity=0.175 Sum_probs=64.1
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCc------------ccccccccccCEEEEeCCCCCcCC
Q 013791 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------------GLQRYGQYLYDALVLFCPSVERFG 93 (436)
Q Consensus 26 ~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~------------~L~~~ge~~yd~LII~~p~~~~~~ 93 (436)
+..+.|++||+.+--+........+.|+..|.++....++...+ .+..-..-.||.|||-....+.+-
T Consensus 597 ti~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGGg~~~Lr 676 (753)
T 3ttv_A 597 DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIA 676 (753)
T ss_dssp CCTTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCGGGTT
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCCChHHhh
Confidence 45578999999776666778889999999999999876654321 122223345899999665334342
Q ss_pred CCCCH-HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce
Q 013791 94 GSIDV-ASIVDFVDSGHDLIVAADSNASDLIREVATECGVD 133 (436)
Q Consensus 94 ~~l~~-~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~ 133 (436)
.+-.. +-|+++.+.|.=|--.. .+ + .+|.+.||.
T Consensus 677 ~d~~vl~~Vre~~~~gKpIAAIC-~G-p----~lLa~AGL~ 711 (753)
T 3ttv_A 677 DNGDANYYLMEAYKHLKPIALAG-DA-R----KFKATIKIA 711 (753)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEEG-GG-G----GGGGGGTCC
T ss_pred hCHHHHHHHHHHHhcCCeEEEEC-ch-H----HHHHHcCCC
Confidence 21112 55666666666444222 21 1 467888984
No 54
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=52.32 E-value=53 Score=30.56 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCccc----ccchhHHHHHHHhCCceEEEecCCCCCcc-----------cccccccccCEEEEeCCCCCcC
Q 013791 28 TDRRVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNIG-----------LQRYGQYLYDALVLFCPSVERF 92 (436)
Q Consensus 28 ~~~r~LVl~d~~~~----~~~~S~f~~~L~~rGf~v~~~~~~d~~~~-----------L~~~ge~~yd~LII~~p~~~~~ 92 (436)
...|+|+++-+... +..-..+.+.|++.|.+++.....+-.+. -........|.|||..|.--
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn-- 110 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERH-- 110 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSS--
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCC--
Confidence 34689999877532 12223467778888999998655443211 01122334599999999654
Q ss_pred CCCCCHHHHHHHHHCC-----------Cc-EEEE-eC--CC---CcHHHHHHHHHcCceecCC
Q 013791 93 GGSIDVASIVDFVDSG-----------HD-LIVA-AD--SN---ASDLIREVATECGVDFDED 137 (436)
Q Consensus 93 ~~~l~~~~L~~Fvd~G-----------GN-iLi~-~~--~~---~~~~lr~ll~ElGI~~~~~ 137 (436)
.+++ ..|+.|||.- |. +.++ +. .+ ..+.++.++..+|+...++
T Consensus 111 -~sip-a~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~gg~~a~~~Lr~~l~~lg~~~v~~ 171 (247)
T 2q62_A 111 -GAMT-GIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPN 171 (247)
T ss_dssp -SSCC-HHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSCCCHHHHHHHHHHHHTTCEECSC
T ss_pred -CCcc-HHHHHHHHHhhhccCcccccCCCEEEEEEeCCCccHHHHHHHHHHHHHHCCCEEeCC
Confidence 2233 3455555532 22 3333 22 11 2468999999999998875
No 55
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=50.42 E-value=50 Score=39.30 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=52.7
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCceE----eecccc-CCCceEEEEEecCCc--eeeeEEEE
Q 013791 306 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYV----LKTLST-DQKGHYSAEFKVPDV--YGVFQFKV 378 (436)
Q Consensus 306 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~~----R~~L~~-~~~~~y~~~f~~PD~--hGvf~f~v 378 (436)
+...||-.|.|.|.+-+- +..+.|.. ..+.+ ...||-- |..++. +..|.|+.+|+||+. -|.|+.++
T Consensus 134 DR~iYrPGqtV~~r~i~~---d~~~~p~~-~~v~v--~l~dP~g~~i~~~~~~~t~~~G~~~~~f~Lp~~~~~G~w~I~v 207 (1661)
T 2b39_A 134 DKTIYTPGSTVLYRVFTV---DHKLLPVG-QTVFI--TIETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVWKIKA 207 (1661)
T ss_dssp SCSEECTTSEEEEEEEEE---CTTSCCCC-CCEEE--EEEETTEEEEEEEEECTTTTTSCCEEEEECCSSCCCEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEE---CCCCcccC-ceEEE--EEECCCCCEEeeeeecccccCCeEeeeeeCCCCccccceEEEE
Confidence 455799999999998665 36688854 45554 4569953 344552 478999999999997 79999999
Q ss_pred eee
Q 013791 379 EYQ 381 (436)
Q Consensus 379 ~Y~ 381 (436)
.+.
T Consensus 208 ~~~ 210 (1661)
T 2b39_A 208 YYE 210 (1661)
T ss_dssp EET
T ss_pred Eee
Confidence 885
No 56
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=50.08 E-value=36 Score=28.69 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=52.1
Q ss_pred HHHHHHHhCCceEEEecCC--CCCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCC
Q 013791 47 LYFGSLTSRGFQLEFKLAD--DPNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADS 117 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~--d~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~GGNiLi~~~~ 117 (436)
...+.|.+.||++--..|+ -+.+ ++.+- +..-|..||+-|... .++.+.+-++.|=..+|....
T Consensus 31 ~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el-~~~vDlavi~vp~~~------~~~v~~~~~~~gi~~i~~~~g 103 (140)
T 1iuk_A 31 YVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDL-KEPVDILDVFRPPSA------LMDHLPEVLALRPGLVWLQSG 103 (140)
T ss_dssp HHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGC-CSCCSEEEECSCHHH------HTTTHHHHHHHCCSCEEECTT
T ss_pred HHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHC-CCCCCEEEEEeCHHH------HHHHHHHHHHcCCCEEEEcCC
Confidence 4566799999998777676 3322 11111 113488888877633 223344555666444555555
Q ss_pred CCcHHHHHHHHHcCceecC
Q 013791 118 NASDLIREVATECGVDFDE 136 (436)
Q Consensus 118 ~~~~~lr~ll~ElGI~~~~ 136 (436)
...+.+.+.+++.|+.+-.
T Consensus 104 ~~~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 104 IRHPEFEKALKEAGIPVVA 122 (140)
T ss_dssp CCCHHHHHHHHHTTCCEEE
T ss_pred cCHHHHHHHHHHcCCEEEc
Confidence 5578899999999998764
No 57
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=49.49 E-value=42 Score=26.95 Aligned_cols=94 Identities=7% Similarity=0.093 Sum_probs=46.9
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013791 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~ 107 (436)
...|+||+=|+..... .+...|+..||++... .+..-.+.......+|.+|+ ..... ..+.-.+.+.+.+
T Consensus 7 ~~~~iLivd~~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlii~-d~~l~----~~~g~~~~~~l~~ 76 (147)
T 2zay_A 7 KWWRIMLVDTQLPALA---ASISALSQEGFDIIQC--GNAIEAVPVAVKTHPHLIIT-EANMP----KISGMDLFNSLKK 76 (147)
T ss_dssp -CEEEEEECTTGGGGH---HHHHHHHHHTEEEEEE--SSHHHHHHHHHHHCCSEEEE-ESCCS----SSCHHHHHHHHHT
T ss_pred CCceEEEEeCCHHHHH---HHHHHHHHcCCeEEEe--CCHHHHHHHHHcCCCCEEEE-cCCCC----CCCHHHHHHHHHc
Confidence 3456666655554443 4556677789998743 22211222222234677665 33222 1344555666654
Q ss_pred -----CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 108 -----GHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 108 -----GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
.-.++++++....+..... -+.|+
T Consensus 77 ~~~~~~~pii~ls~~~~~~~~~~~-~~~g~ 105 (147)
T 2zay_A 77 NPQTASIPVIALSGRATAKEEAQL-LDMGF 105 (147)
T ss_dssp STTTTTSCEEEEESSCCHHHHHHH-HHHTC
T ss_pred CcccCCCCEEEEeCCCCHHHHHHH-HhCCC
Confidence 3346666665554444333 34554
No 58
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=49.40 E-value=34 Score=31.18 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=28.3
Q ss_pred CeEEEEEc-----CcccccchhHHHHHHHhCCceEEEecCCC
Q 013791 30 RRVLVLVD-----DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 30 ~r~LVl~d-----~~~~~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
+|+++|+- +...........+-|+..||++++..++.
T Consensus 7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g 48 (232)
T 1vhq_A 7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDK 48 (232)
T ss_dssp CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 57888886 44455667778889999999999877653
No 59
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=48.97 E-value=24 Score=34.92 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=34.0
Q ss_pred cCCCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCC
Q 013791 24 PENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 24 ~~~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
.......|++|++-+..+........+.|+..||++++..|+.
T Consensus 200 ~~~~~~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~ 242 (396)
T 3uk7_A 200 KITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEK 242 (396)
T ss_dssp EEECCCCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTC
T ss_pred cchhccceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCC
Confidence 3345678999998766566677888999999999999987764
No 60
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=48.29 E-value=97 Score=27.15 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=61.1
Q ss_pred CeEEEEEcCccccc----chhHHHHHHHhCCceEEEecCCCCCc-------------ccccccccccCEEEEeCCCCCcC
Q 013791 30 RRVLVLVDDFAIKS----SHSLYFGSLTSRGFQLEFKLADDPNI-------------GLQRYGQYLYDALVLFCPSVERF 92 (436)
Q Consensus 30 ~r~LVl~d~~~~~~----~~S~f~~~L~~rGf~v~~~~~~d~~~-------------~L~~~ge~~yd~LII~~p~~~~~ 92 (436)
.|+|++.-+..... .-..+.+.|+ .|.+++.....|-.. .-........|.+|+..|.--
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~-- 79 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYN-- 79 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBT--
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccc--
Confidence 47888886654211 1223555565 688988765443211 011223445699999999654
Q ss_pred CCCCC--HHHHHHHHHC--------------CCcEEEEe-CCC-----CcHHHHHHHHHcCceecCC
Q 013791 93 GGSID--VASIVDFVDS--------------GHDLIVAA-DSN-----ASDLIREVATECGVDFDED 137 (436)
Q Consensus 93 ~~~l~--~~~L~~Fvd~--------------GGNiLi~~-~~~-----~~~~lr~ll~ElGI~~~~~ 137 (436)
.+++ .+...|.+.. |..+++++ ..+ ....++.++..+|+..-+.
T Consensus 80 -~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 80 -YAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp -TBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC---CCSHHHHHHHHHTTCEECCC
T ss_pred -cCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchhHHHHHHHHHHHHcCCeeecc
Confidence 2233 3666666653 12344332 222 3478999999999999986
No 61
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=47.72 E-value=29 Score=31.12 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=41.4
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCC-CCcc------------cccccccccCEEEEeCC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD-PNIG------------LQRYGQYLYDALVLFCP 87 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d-~~~~------------L~~~ge~~yd~LII~~p 87 (436)
..|+++++-+.-.........+-|+..||++++..++. ..+. +..-....||.|||-..
T Consensus 9 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG 80 (208)
T 3ot1_A 9 SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGG 80 (208)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCC
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCC
Confidence 57888888666567777888999999999999987763 2211 22222347899888544
No 62
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=46.77 E-value=36 Score=29.70 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=60.3
Q ss_pred CeEEEEEcCcccccchhHHHH----HHHhCCceEEEecCCCCCc--------------ccccccccccCEEEEeCCCCCc
Q 013791 30 RRVLVLVDDFAIKSSHSLYFG----SLTSRGFQLEFKLADDPNI--------------GLQRYGQYLYDALVLFCPSVER 91 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~----~L~~rGf~v~~~~~~d~~~--------------~L~~~ge~~yd~LII~~p~~~~ 91 (436)
.|+|+++-+......-....+ .|+ .|.+++.....+-+. .-.......+|.|||..|.--
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~- 84 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYN- 84 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEET-
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccc-
Confidence 489999977642222223333 344 588888765544110 001123345699999999654
Q ss_pred CCCCCCH--HHHHHHHH-------CCCcEEEEeCC-C------CcHHHHHHHHHcCceecCCCCeEEEe
Q 013791 92 FGGSIDV--ASIVDFVD-------SGHDLIVAADS-N------ASDLIREVATECGVDFDEDPAAMVID 144 (436)
Q Consensus 92 ~~~~l~~--~~L~~Fvd-------~GGNiLi~~~~-~------~~~~lr~ll~ElGI~~~~~~~~~VvD 144 (436)
..++. +.+.|.+. +|..+.+++.. + ....++.++..+|+.+.+. ..+.+.
T Consensus 85 --~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g~~~~~~~l~~~l~~~g~~~~~~-~~~~~~ 150 (193)
T 1rtt_A 85 --YSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFGTARAQYHLRQTLVFLDVHPLNK-PEVMIS 150 (193)
T ss_dssp --TEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHHTCEECCS-SCEEEC
T ss_pred --cCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCccHHHHHHHHHHHHHcCCEEcCC-CeEEec
Confidence 22333 34444443 24445543322 2 1367889999999999873 134544
No 63
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=46.09 E-value=41 Score=33.21 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCC
Q 013791 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
...+|++||+-+.-+........+.|+..||++++..++.
T Consensus 10 ~~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~ 49 (396)
T 3uk7_A 10 ANSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGK 49 (396)
T ss_dssp -CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred hcCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3468999999766566777888999999999999987764
No 64
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=45.84 E-value=65 Score=28.82 Aligned_cols=94 Identities=13% Similarity=0.030 Sum_probs=54.3
Q ss_pred CeEEEEEcCcccccchhHHHHHHH--------hCCceEEEecCCCCCc------c------cccccccccCEEEEeCCCC
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLT--------SRGFQLEFKLADDPNI------G------LQRYGQYLYDALVLFCPSV 89 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~--------~rGf~v~~~~~~d~~~------~------L~~~ge~~yd~LII~~p~~ 89 (436)
.|+++++-+.-.........+-|+ ..||++++..++...+ . +..-....||.|||-....
T Consensus 6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~ 85 (212)
T 3efe_A 6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTT 85 (212)
T ss_dssp CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSC
T ss_pred cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCc
Confidence 578888866656677788888888 6799999877664321 1 1222223789988855433
Q ss_pred CcCCCCCCH----HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 90 ERFGGSIDV----ASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 90 ~~~~~~l~~----~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
..+ ... +-|+++.++|. .+.+...+ -.+|.+.|+
T Consensus 86 ~~~---~~~~~l~~~l~~~~~~gk-~iaaiC~G-----~~~La~aGl 123 (212)
T 3efe_A 86 WSE---EIHQPILERIGQALKIGT-IVAAICGA-----TDALANMGY 123 (212)
T ss_dssp TTS---GGGHHHHHHHHHHHHHTC-EEEEETHH-----HHHHHHTTT
T ss_pred ccc---ccCHHHHHHHHHHHHCCC-EEEEEcHH-----HHHHHHcCC
Confidence 222 122 34455555555 44333221 145666664
No 65
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=45.19 E-value=27 Score=31.33 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=44.8
Q ss_pred CeEEEEEcCcccc--cchhHHHHHHHhCCceEEEec-----CC-CCCcccccccccccCEEEEeCCCCCcCCCCCCHHHH
Q 013791 30 RRVLVLVDDFAIK--SSHSLYFGSLTSRGFQLEFKL-----AD-DPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASI 101 (436)
Q Consensus 30 ~r~LVl~d~~~~~--~~~S~f~~~L~~rGf~v~~~~-----~~-d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L 101 (436)
.|+|||.-++... ..-..+.+.+++.|.+++... ++ +.++.-........|.||+..|--- + --+..|
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~-~---~~pa~l 77 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYW-F---NCPPLL 77 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBT-T---BCCHHH
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhh-c---CCCHHH
Confidence 3789988765433 233457788888899888752 21 1122222333455699999988544 2 134577
Q ss_pred HHHHHC
Q 013791 102 VDFVDS 107 (436)
Q Consensus 102 ~~Fvd~ 107 (436)
+.|+|+
T Consensus 78 K~~iDr 83 (192)
T 3f2v_A 78 KQWLDE 83 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777775
No 66
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=44.05 E-value=84 Score=26.77 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=40.2
Q ss_pred cccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-------CCcEEEEe-CCCC------cHHHHHHHHHcCceecCCCCeEE
Q 013791 77 YLYDALVLFCPSVERFGGSIDVASIVDFVDS-------GHDLIVAA-DSNA------SDLIREVATECGVDFDEDPAAMV 142 (436)
Q Consensus 77 ~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~-------GGNiLi~~-~~~~------~~~lr~ll~ElGI~~~~~~~~~V 142 (436)
..+|.+||..|.-. .. -+..|+.|+|. |..+.+++ +.+. ...+|.++.++|+.+-+. + +.
T Consensus 62 ~~aD~ii~~tP~y~---~~-~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g~~~a~~~l~~~l~~~g~~~v~~-~-v~ 135 (174)
T 3gfs_A 62 TKADAIVLLSPEYH---SG-MSGALKNALDFLSSEQFKYKPVALLAVAGGGDGGINALNNMRTVMRGVYANVIPK-Q-LV 135 (174)
T ss_dssp HHCSSEEEEEECSS---SS-CCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTCSHHHHHHHHHHHHHTTCEEEEE-E-EE
T ss_pred HHCCEEEEEcCCcC---CC-CCHHHHHHHHHhCHhhhCCCcEEEEEECCCChhHHHHHHHHHHHHHHcCCEEecc-e-EE
Confidence 46799999999764 22 23556666663 44455443 3221 367999999999999885 3 44
Q ss_pred Ee
Q 013791 143 ID 144 (436)
Q Consensus 143 vD 144 (436)
+.
T Consensus 136 i~ 137 (174)
T 3gfs_A 136 LK 137 (174)
T ss_dssp EC
T ss_pred ec
Confidence 44
No 67
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=43.81 E-value=34 Score=30.45 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=29.7
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCC
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDP 67 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~ 67 (436)
.|++||+-+...........+-|+..||++++..++..
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~ 40 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASD 40 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSST
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57888886655566777888999999999998877653
No 68
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=43.80 E-value=43 Score=38.75 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=51.1
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccC-CeEEEEEEeCceE----eeccccCCCceEEEEEecCCc--eeeeEEEE
Q 013791 306 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSD-DVQVQFYMMSPYV----LKTLSTDQKGHYSAEFKVPDV--YGVFQFKV 378 (436)
Q Consensus 306 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~d-diQlEf~mldP~~----R~~L~~~~~~~y~~~f~~PD~--hGvf~f~v 378 (436)
+...||-.|.|.|.+=+-. ....|-... .+.+| .+||-- |..+.....|.++.+|+||+. -|.|+.++
T Consensus 107 Dr~iYrPGqtV~~r~~~~~---~~~~p~~~~~~v~v~--l~dp~g~~i~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~I~~ 181 (1325)
T 2pn5_A 107 DKPVFKPGDTVNFRVIVLD---TELKPPARVKSVYVT--IRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISV 181 (1325)
T ss_dssp SCSEECTTCEEEEEEEEEE---TTSSCCSSCCEEEEE--EECTTCCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEec---CCccccccCccEEEE--EECCCCCEEEEEecccCCCCeEecceECCCCccccceEEEE
Confidence 4557999999999987654 235676532 34554 469853 333333568999999999997 79999999
Q ss_pred eee
Q 013791 379 EYQ 381 (436)
Q Consensus 379 ~Y~ 381 (436)
.+.
T Consensus 182 ~~~ 184 (1325)
T 2pn5_A 182 EVE 184 (1325)
T ss_dssp EET
T ss_pred EeC
Confidence 985
No 69
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=43.78 E-value=45 Score=26.08 Aligned_cols=94 Identities=16% Similarity=0.252 Sum_probs=44.3
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHH-H
Q 013791 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFV-D 106 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fv-d 106 (436)
.+.|+|++=|+...+ ..+.+.|+..||++... .+..-.+..-....+|.+|+ +...... +--.+.+.+ +
T Consensus 6 ~~~~ilivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-d~~l~~~----~g~~~~~~l~~ 75 (130)
T 3eod_A 6 VGKQILIVEDEQVFR---SLLDSWFSSLGATTVLA--ADGVDALELLGGFTPDLMIC-DIAMPRM----NGLKLLEHIRN 75 (130)
T ss_dssp TTCEEEEECSCHHHH---HHHHHHHHHTTCEEEEE--SCHHHHHHHHTTCCCSEEEE-CCC---------CHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHH---HHHHHHHHhCCceEEEe--CCHHHHHHHHhcCCCCEEEE-ecCCCCC----CHHHHHHHHHh
Confidence 456666666655443 34666778889998753 22211233333344676554 4332211 222222222 2
Q ss_pred C--CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 107 S--GHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 107 ~--GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
. ...++++++....+..... .+.|+
T Consensus 76 ~~~~~~ii~~t~~~~~~~~~~~-~~~g~ 102 (130)
T 3eod_A 76 RGDQTPVLVISATENMADIAKA-LRLGV 102 (130)
T ss_dssp TTCCCCEEEEECCCCHHHHHHH-HHHCC
T ss_pred cCCCCCEEEEEcCCCHHHHHHH-HHcCC
Confidence 3 3456666665554444333 34553
No 70
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=43.45 E-value=77 Score=28.29 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=27.8
Q ss_pred CeEEEEEc----------CcccccchhHHHHHHHhCCceEEEecCCC
Q 013791 30 RRVLVLVD----------DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 30 ~r~LVl~d----------~~~~~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
+|+|||+- +--.........+-|+..||++++..++.
T Consensus 6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~ 52 (224)
T 1u9c_A 6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQG 52 (224)
T ss_dssp CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred ceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 58888886 22233567788889999999999977654
No 71
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=42.90 E-value=1.6e+02 Score=27.00 Aligned_cols=104 Identities=11% Similarity=-0.046 Sum_probs=61.1
Q ss_pred CCCeEEEEEcCc-ccccchh-HHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCC-CcCCCCCCHHHHHHH
Q 013791 28 TDRRVLVLVDDF-AIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVDF 104 (436)
Q Consensus 28 ~~~r~LVl~d~~-~~~~~~S-~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~-~~~~~~l~~~~L~~F 104 (436)
...+++|+|.+. +..+... .+.+.| .+|++++....++.++. ....++.+|+..|+. +.- .+-+.+.+.++
T Consensus 39 ~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~~~~----~l~~~~~vI~~tsTyG~Ge-~Pdna~~F~~~ 112 (219)
T 3hr4_A 39 SRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKYRLS----CLEEERLLLVVTSTFGNGD-CPGNGEKLKKS 112 (219)
T ss_dssp TSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGCCGG----GGGTCSEEEEEEECBTTTB-CCGGGHHHHHH
T ss_pred cCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccCCHh----HhccCCeEEEEEeccCCCc-CCHHHHHHHHH
Confidence 567899999875 2222222 344445 57998887655554322 123568888888876 321 11234567777
Q ss_pred HHC------CCcEEEEe--CCC------CcHHHHHHHHHcCceecCC
Q 013791 105 VDS------GHDLIVAA--DSN------ASDLIREVATECGVDFDED 137 (436)
Q Consensus 105 vd~------GGNiLi~~--~~~------~~~~lr~ll~ElGI~~~~~ 137 (436)
+.+ |-+.-|++ +.. ....+...++++|...--.
T Consensus 113 L~~~~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~ 159 (219)
T 3hr4_A 113 LFMLKELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTP 159 (219)
T ss_dssp HHHCCCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSC
T ss_pred HHhcchhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeC
Confidence 764 22233443 222 1577889999999887654
No 72
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=42.62 E-value=45 Score=30.59 Aligned_cols=37 Identities=16% Similarity=0.410 Sum_probs=27.2
Q ss_pred CeEEEEEcCcc------------cccchhHHHHHHHhCCceEEEecCCC
Q 013791 30 RRVLVLVDDFA------------IKSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 30 ~r~LVl~d~~~------------~~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
+|+||++-+.. .........+.|+..||+|++..++.
T Consensus 4 ~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g 52 (243)
T 1rw7_A 4 KKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETG 52 (243)
T ss_dssp CEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999995422 12466678888999999999987654
No 73
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=41.94 E-value=77 Score=25.20 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=47.1
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~-- 107 (436)
.|+||+=|+...+ ..+...|+..|+........+..-.+.......+|.+|+ +.... ..+--.+.+.+.+
T Consensus 6 ~~ILivdd~~~~~---~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~-D~~l~----~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 6 KRVLVVEDNPDDI---ALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIIL-DIGLP----IANGFEVMSAVRKPG 77 (144)
T ss_dssp EEEEEECCCHHHH---HHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEE-CTTCG----GGCHHHHHHHHHSSS
T ss_pred CEEEEEeCCHHHH---HHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEE-eCCCC----CCCHHHHHHHHHhcc
Confidence 4555554544333 346667788899844333333322333333445676554 44332 2345556666665
Q ss_pred ---CCcEEEEeCCCCcHHHHHHHHHcC
Q 013791 108 ---GHDLIVAADSNASDLIREVATECG 131 (436)
Q Consensus 108 ---GGNiLi~~~~~~~~~lr~ll~ElG 131 (436)
+-.++++++....+..... -+.|
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~-~~~g 103 (144)
T 3kht_A 78 ANQHTPIVILTDNVSDDRAKQC-MAAG 103 (144)
T ss_dssp TTTTCCEEEEETTCCHHHHHHH-HHTT
T ss_pred cccCCCEEEEeCCCCHHHHHHH-HHcC
Confidence 2246666665554444333 3455
No 74
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=41.01 E-value=82 Score=31.56 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=66.8
Q ss_pred CCCCeEEEEEcCc--ccccchhHHHHHHHhCCceEEE-ecCCCCC--cccccccccccCEEEEeCCCCCcCCCCCCH--H
Q 013791 27 PTDRRVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEF-KLADDPN--IGLQRYGQYLYDALVLFCPSVERFGGSIDV--A 99 (436)
Q Consensus 27 ~~~~r~LVl~d~~--~~~~~~S~f~~~L~~rGf~v~~-~~~~d~~--~~L~~~ge~~yd~LII~~p~~~~~~~~l~~--~ 99 (436)
...++++|+|++. +.+.--....+.|+++|.++.. +..+.+. .+-.......||.|||-+|+.. +.+-+ +
T Consensus 263 ~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~---~~~~p~~~ 339 (410)
T 4dik_A 263 PKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE---AEIHPLMR 339 (410)
T ss_dssp CCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTT---SSSCHHHH
T ss_pred ccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcC---CcCCHHHH
Confidence 3456899999985 2233445688899999988764 3333222 2211234566799999999764 22333 3
Q ss_pred HHHHHHH---CCCc-EEEEeC----CCCcHHHHHHHHHcCceecCC
Q 013791 100 SIVDFVD---SGHD-LIVAAD----SNASDLIREVATECGVDFDED 137 (436)
Q Consensus 100 ~L~~Fvd---~GGN-iLi~~~----~~~~~~lr~ll~ElGI~~~~~ 137 (436)
.++..+. ..|+ +.+.++ ....+.+++.++++|+++-+.
T Consensus 340 ~~l~~l~~~~~~~K~~~~FGSyGWsg~a~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 340 FTLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHHHHHHHCCCCCEEEEEEECCCCCTTSCCHHHHHTTSSCEEEEE
T ss_pred HHHHHHHhcccCCCEEEEEECCCCCcHHHHHHHHHHHHCCCEEECc
Confidence 3444333 2344 445554 344578999999999988663
No 75
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=40.92 E-value=86 Score=26.60 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=34.7
Q ss_pred ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC------------------CCcEEEEeC-CC--------CcHHHHHHHH
Q 013791 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDS------------------GHDLIVAAD-SN--------ASDLIREVAT 128 (436)
Q Consensus 76 e~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~------------------GGNiLi~~~-~~--------~~~~lr~ll~ 128 (436)
...+|.||+..|.-- ..++ ..|+.|+|. |..+.+++. .. ....++.++.
T Consensus 69 l~~aD~ii~~~P~y~---~~~p-~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~ 144 (184)
T 1rli_A 69 ILQCHILIFATPIYW---FGMS-GTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFH 144 (184)
T ss_dssp HHTCSEEEEEEECBT---TBCC-HHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHH
T ss_pred HHhCCEEEEEeCccc---cCCc-HHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHH
Confidence 446799999999654 2233 445555553 344553332 11 1356788899
Q ss_pred HcCceecC
Q 013791 129 ECGVDFDE 136 (436)
Q Consensus 129 ElGI~~~~ 136 (436)
.+|+...+
T Consensus 145 ~~G~~~~~ 152 (184)
T 1rli_A 145 FMGMSFKG 152 (184)
T ss_dssp HHTCEEEE
T ss_pred HcCCccce
Confidence 99998875
No 76
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=40.72 E-value=1e+02 Score=29.26 Aligned_cols=107 Identities=16% Similarity=0.064 Sum_probs=63.3
Q ss_pred CCCeEEEEEcCccc----ccchhHHHHHHHhCCceEEEecCCCCCccc------------ccccccccCEEEEeCCCCCc
Q 013791 28 TDRRVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNIGL------------QRYGQYLYDALVLFCPSVER 91 (436)
Q Consensus 28 ~~~r~LVl~d~~~~----~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L------------~~~ge~~yd~LII~~p~~~~ 91 (436)
...|+|+++-+... +..-..+.+.|++.|.+++.....+..+.- ........|.|||.+|.--
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn- 135 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH- 135 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET-
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccc-
Confidence 45789999977542 122234677788889999986555432110 0112233599999999654
Q ss_pred CCCCCCH--HHHHHHHHC--------CCc-EEEE-eC--CC---CcHHHHHHHHHcCceecCC
Q 013791 92 FGGSIDV--ASIVDFVDS--------GHD-LIVA-AD--SN---ASDLIREVATECGVDFDED 137 (436)
Q Consensus 92 ~~~~l~~--~~L~~Fvd~--------GGN-iLi~-~~--~~---~~~~lr~ll~ElGI~~~~~ 137 (436)
.+++. +.+.|++.. .|. +.++ +. .+ ..+.+|.++..+|+..-++
T Consensus 136 --~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~gg~~a~~~Lr~~l~~lg~~vv~~ 196 (279)
T 2fzv_A 136 --GQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQSFNAVNTLRLLGRWMRMFTIPN 196 (279)
T ss_dssp --TEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSCCCHHHHHHHHHHHHTTCEECSC
T ss_pred --cCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCccHHHHHHHHHHHHHhcCcEEeCC
Confidence 22333 455555532 133 3333 22 11 1367999999999998875
No 77
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=40.72 E-value=1.5e+02 Score=25.91 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=39.0
Q ss_pred eEEEEEcCccccc----chhHHHHHHHhCCceEEEecCCCCCcc--cc-------------------cccccccCEEEEe
Q 013791 31 RVLVLVDDFAIKS----SHSLYFGSLTSRGFQLEFKLADDPNIG--LQ-------------------RYGQYLYDALVLF 85 (436)
Q Consensus 31 r~LVl~d~~~~~~----~~S~f~~~L~~rGf~v~~~~~~d~~~~--L~-------------------~~ge~~yd~LII~ 85 (436)
|+|++.-++.... .-..+.+.| +.|.+++.....+..+. +. .......|.|||.
T Consensus 2 kiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~ 80 (196)
T 3lcm_A 2 KILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFI 80 (196)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEE
T ss_pred EEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEE
Confidence 6788876653321 222355556 67999998655433221 10 1112346999999
Q ss_pred CCCCCcCCCCCCHHHHHHHHH
Q 013791 86 CPSVERFGGSIDVASIVDFVD 106 (436)
Q Consensus 86 ~p~~~~~~~~l~~~~L~~Fvd 106 (436)
.|--- + + -+..|+.|+|
T Consensus 81 ~P~y~-~--~-~pa~LK~~iD 97 (196)
T 3lcm_A 81 FPIWW-S--G-MPAILKGFID 97 (196)
T ss_dssp EECBT-T--B-CCHHHHHHHH
T ss_pred Cchhh-c--c-ccHHHHHHHH
Confidence 88554 2 1 3355666666
No 78
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=40.69 E-value=39 Score=40.23 Aligned_cols=70 Identities=19% Similarity=0.408 Sum_probs=52.3
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCceE----eeccccCCCceEE-EEEecCCc--eeeeEEEE
Q 013791 306 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYV----LKTLSTDQKGHYS-AEFKVPDV--YGVFQFKV 378 (436)
Q Consensus 306 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~~----R~~L~~~~~~~y~-~~f~~PD~--hGvf~f~v 378 (436)
+...||-.|.|.|.+-+- +..+.|.. +.+. +...||-- |..++. ..|.|+ .+|+||+. -|.|+.++
T Consensus 131 DR~iYrPGqtV~~r~i~~---d~~~~p~~-~~v~--v~l~dP~G~~i~~~~~~~-~~G~~~~~~f~Lp~~~~~G~w~I~v 203 (1676)
T 3cu7_A 131 DKPVYTPDQSVKVRVYSL---NDDLKPAK-RETV--LTFIDPEGSEVDMVEEID-HIGIISFPDFKIPSNPRYGMWTIKA 203 (1676)
T ss_dssp SCSEECTTCEECEEEEEE---CTTCSCCC-CCEE--EEEEETTTEECCCEEECC-SSSEEECCCEECCSSCCCEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEE---CCCCcccc-cceE--EEEECCCCCEEEEEeeec-CCCceecceeeCCCCccccceEEEE
Confidence 455799999999998654 36788965 4555 44569953 233343 789999 99999997 79999999
Q ss_pred eeee
Q 013791 379 EYQR 382 (436)
Q Consensus 379 ~Y~R 382 (436)
.+..
T Consensus 204 ~~~~ 207 (1676)
T 3cu7_A 204 KYKE 207 (1676)
T ss_dssp EBSS
T ss_pred EecC
Confidence 9853
No 79
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=39.87 E-value=62 Score=27.33 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHHHHhCCceEEEecCCC--CCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC-CcEEEEeC
Q 013791 47 LYFGSLTSRGFQLEFKLADD--PNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG-HDLIVAAD 116 (436)
Q Consensus 47 ~f~~~L~~rGf~v~~~~~~d--~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G-GNiLi~~~ 116 (436)
...+.|.+.||+|....|+. +.+ ++..- ...-|.+||+-|. + .-.+.+.+-++.| +.+++. .
T Consensus 31 ~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el-~~~~Dlvii~vp~-~-----~v~~v~~~~~~~g~~~i~i~-~ 102 (145)
T 2duw_A 31 RVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADV-PEKVDMVDVFRNS-E-----AAWGVAQEAIAIGAKTLWLQ-L 102 (145)
T ss_dssp HHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTC-SSCCSEEECCSCS-T-----HHHHHHHHHHHHTCCEEECC-T
T ss_pred HHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHc-CCCCCEEEEEeCH-H-----HHHHHHHHHHHcCCCEEEEc-C
Confidence 46677889999987777765 221 11111 1234888887773 2 2345566666777 555443 3
Q ss_pred CCCcHHHHHHHHHcCceecC
Q 013791 117 SNASDLIREVATECGVDFDE 136 (436)
Q Consensus 117 ~~~~~~lr~ll~ElGI~~~~ 136 (436)
....+.+.+.+++.|+.+--
T Consensus 103 ~~~~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 103 GVINEQAAVLAREAGLSVVM 122 (145)
T ss_dssp TCCCHHHHHHHHTTTCEEEC
T ss_pred ChHHHHHHHHHHHcCCEEEc
Confidence 44578899999999999884
No 80
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=39.11 E-value=80 Score=27.74 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=43.7
Q ss_pred eEEEEEcCcc-cccchhHHHHHHHhCCceEEEecCCC-CCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013791 31 RVLVLVDDFA-IKSSHSLYFGSLTSRGFQLEFKLADD-PNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (436)
Q Consensus 31 r~LVl~d~~~-~~~~~S~f~~~L~~rGf~v~~~~~~d-~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~ 107 (436)
|+||+.-.+. ..+.-.+++....+...+++.....+ .++.-....-...|.||+..|--- + --+..|+.|+|+
T Consensus 2 kiLii~ghP~~~~S~~~~~l~~~~~~~~~v~v~dL~~~~D~~~~~~~l~~aD~iV~~~P~y~-~---~~pa~lK~~iDr 76 (177)
T 3ha2_A 2 QTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVADFNVEQEQSLLLQNDRIILEFPLYW-Y---SAPALLKQWMDT 76 (177)
T ss_dssp CEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCTTCCHHHHHHHHHTCSEEEEEEECBT-T---BCCHHHHHHHHH
T ss_pred eEEEEEcCCCcccCHHHHHHHHHHhcCCCEEEEECCCcccHHHHHHHHHhCCEEEEECChhh-c---cCCHHHHHHHHH
Confidence 6888887765 34444456666655567787765443 222222333445599999988643 2 134667777765
No 81
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=37.61 E-value=55 Score=25.86 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCeEEEEEEeCc-eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 336 DDVQVQFYMMSP-YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 336 ddiQlEf~mldP-~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
+|+..|..+-+- -.+..++..++|+|.++|+ |..-|.|+..|.|.-
T Consensus 22 ~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~yt-P~e~G~h~v~V~~~g 68 (93)
T 2d7n_A 22 GELTGEVRMPSGKTARPNITDNKDGTITVRYA-PTEKGLHQMGIKYDG 68 (93)
T ss_dssp SCEEEEEECTTSCEECCEEEECSSSCEEEEEC-CSSCEEEEEEEEESS
T ss_pred CCEEEEEECCCCCccceEEEECCCCEEEEEEE-ccCCEEEEEEEEECC
Confidence 666666654331 2334455567899999997 555699999999975
No 82
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=37.58 E-value=1.8e+02 Score=25.29 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=42.9
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCC--C---cCCCCCCHHHHHHHH
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV--E---RFGGSIDVASIVDFV 105 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~--~---~~~~~l~~~~L~~Fv 105 (436)
|++|+ |.. ...+..+.+.|+..|.++....+ ++ ....+|.|||-.+.. + .+......+.|++++
T Consensus 4 ~I~ii-d~~--~~~~~~~~~~l~~~G~~~~~~~~-~~-------~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~ 72 (200)
T 1ka9_H 4 KALLI-DYG--SGNLRSAAKALEAAGFSVAVAQD-PK-------AHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHL 72 (200)
T ss_dssp EEEEE-CSS--CSCHHHHHHHHHHTTCEEEEESS-TT-------SCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHH
T ss_pred EEEEE-eCC--CccHHHHHHHHHHCCCeEEEecC-hH-------HcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHH
Confidence 55555 532 34556789999999999987643 22 123579988844222 1 111122457788888
Q ss_pred HCCCcEE
Q 013791 106 DSGHDLI 112 (436)
Q Consensus 106 d~GGNiL 112 (436)
++|.-||
T Consensus 73 ~~~~Pil 79 (200)
T 1ka9_H 73 ERGLPFL 79 (200)
T ss_dssp HTTCCEE
T ss_pred HcCCeEE
Confidence 8876665
No 83
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=37.10 E-value=1.2e+02 Score=28.23 Aligned_cols=99 Identities=11% Similarity=-0.006 Sum_probs=55.5
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCC--CC--CHHHHHHH
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG--SI--DVASIVDF 104 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~--~l--~~~~L~~F 104 (436)
.+|+|||.... -+....+.+.|+.+|++++...+...+. .......||.|||.......... .+ ..+.|.++
T Consensus 3 ~~~vliiqh~~--~e~~~~i~~~l~~~G~~v~v~~~~~~~~--~p~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~ 78 (250)
T 3m3p_A 3 LKPVMIIQFSA--SEGPGHFGDFLAGEHIPFQVLRMDRSDP--LPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDA 78 (250)
T ss_dssp CCCEEEEESSS--SCCCHHHHHHHHHTTCCEEEEEGGGTCC--CCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHH
T ss_pred CCeEEEEECCC--CCCHHHHHHHHHHCCCeEEEEeccCCCc--CcCccccCCEEEECCCCCcccccchHHHHHHHHHHHH
Confidence 46788886442 3455577788999999999765432210 01123457998887654332211 11 12445566
Q ss_pred HHCCCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 013791 105 VDSGHDLIVAADSNASDLIREVATECGVDFDE 136 (436)
Q Consensus 105 vd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~~ 136 (436)
++.|--+|=. =-...-++..+|-.+..
T Consensus 79 ~~~~~PvlGI-----C~G~Qll~~~lGG~V~~ 105 (250)
T 3m3p_A 79 VAQRVPVIGH-----CLGGQLLAKAMGGEVTD 105 (250)
T ss_dssp HHHTCCEEEE-----THHHHHHHHHTTCCEEE
T ss_pred HHcCCCEEEE-----CHHHHHHHHHhCCEEEe
Confidence 7777666622 12455577777744433
No 84
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.04 E-value=12 Score=31.48 Aligned_cols=30 Identities=10% Similarity=0.412 Sum_probs=26.5
Q ss_pred cccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 353 LSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 353 L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
....++|+|.+++++|+..|.|+..|-|+.
T Consensus 77 v~Dn~DGsy~v~Yr~~~~~g~~~I~V~~~~ 106 (124)
T 2di7_A 77 VLDRKDGSFIVRYRMYASYKNLKVEIKFQG 106 (124)
T ss_dssp EECCSSSCCEEECCCCSCCSCCEEEEESSS
T ss_pred EEECCCCeEEEEEECCCCCCCEEEEEEECC
Confidence 334579999999999999999999999985
No 85
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=36.32 E-value=58 Score=28.56 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=56.1
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCC-------c------ccccc-cccccCEEEEeCCC--CCcC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-------I------GLQRY-GQYLYDALVLFCPS--VERF 92 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~-------~------~L~~~-ge~~yd~LII~~p~--~~~~ 92 (436)
..|++||+-+.-.........+-|+..||++++..++... + .+..- ....||.|||-... ...+
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l 82 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL 82 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHH
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHh
Confidence 3678888866556667788889999999999988765421 1 11222 23578988886542 1112
Q ss_pred CCCC-CHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 93 GGSI-DVASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 93 ~~~l-~~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
..+- -.+-|+++.++|. .+.+...+. .+|.+.|+
T Consensus 83 ~~~~~~~~~l~~~~~~gk-~i~aiC~G~-----~~La~aGl 117 (197)
T 2rk3_A 83 SESAAVKEILKEQENRKG-LIATICAGP-----TALLAHEI 117 (197)
T ss_dssp HHCHHHHHHHHHHHHTTC-EEEEETTTH-----HHHHHTTC
T ss_pred hhCHHHHHHHHHHHHcCC-EEEEECHHH-----HHHHHCCC
Confidence 1100 1144555555555 443433331 35666776
No 86
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=36.06 E-value=1.5e+02 Score=24.01 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=47.2
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013791 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~ 107 (436)
...|+|++=|+...+. .+.+.|+..||++... .+..-.+.......+|.+|+ +.... ..+--.+.+.+.+
T Consensus 6 ~~~~ILivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~al~~l~~~~~dlii~-D~~l~----~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAE---HLKHILEETGYQTEHV--RNGREAVRFLSLTRPDLIIS-DVLMP----EMDGYALCRWLKG 75 (154)
T ss_dssp -CCEEEEECSCHHHHH---HHHHHHHTTTCEEEEE--SSHHHHHHHHTTCCCSEEEE-ESCCS----SSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHH---HHHHHHHHCCCEEEEe--CCHHHHHHHHHhCCCCEEEE-eCCCC----CCCHHHHHHHHHh
Confidence 3456776666654443 4666677889998654 22221233333445687555 33222 1344455555543
Q ss_pred C-----CcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 108 G-----HDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 108 G-----GNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
- --++++++....+.... +.+.|+
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~-~~~~g~ 104 (154)
T 3gt7_A 76 QPDLRTIPVILLTILSDPRDVVR-SLECGA 104 (154)
T ss_dssp STTTTTSCEEEEECCCSHHHHHH-HHHHCC
T ss_pred CCCcCCCCEEEEECCCChHHHHH-HHHCCC
Confidence 2 23666665554443333 334553
No 87
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=35.85 E-value=46 Score=27.11 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=42.3
Q ss_pred eEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCceEe---eccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 310 YRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYVL---KTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 310 Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~~R---~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
-+++....|.|+...-. =+|+..+.+|--+ ..++..++|+|.++| .|..-|.|+..|.|..
T Consensus 24 ~~vg~~~~F~V~~~~a~-----------g~l~v~V~~P~g~~~~~~v~d~~~gty~v~y-tP~~~G~h~v~V~~~g 87 (112)
T 2d7p_A 24 LKVNQPASFAVQLNGAR-----------GVIDARVHTPSGAVEECYVSELDSDKHTIRF-IPHENGVHSIDVKFNG 87 (112)
T ss_dssp CCTTCCEEEEEECTTCC-----------SCEEEEEECSSSCBCCCEECSCBTTEEEEEE-CCSSCEEEEEEEEESS
T ss_pred cccCCcEEEEEEeCCCC-----------CCEEEEEECCCCCeeeeEEEeCCCCeEEEEE-EcCCCEeEEEEEEECC
Confidence 46666777777654211 1556666777532 234445789999999 7888999999999875
No 88
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=35.51 E-value=88 Score=29.06 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=27.5
Q ss_pred CeEEEEEcCccc------------ccchhHHHHHHHhCCceEEEecCCC
Q 013791 30 RRVLVLVDDFAI------------KSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 30 ~r~LVl~d~~~~------------~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
+|+||++-+... ......-++.|++.||+|++..|+.
T Consensus 10 kkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g 58 (247)
T 3n7t_A 10 RKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETG 58 (247)
T ss_dssp SEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 789999976311 2345568889999999999976653
No 89
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=35.37 E-value=64 Score=25.78 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=29.1
Q ss_pred EEEEEeCce---EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 340 VQFYMMSPY---VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 340 lEf~mldP~---~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
|+..+.+|- +...++..++|+|.++|+.+ .-|.|+..|.|.-
T Consensus 45 l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~-~~G~y~i~V~~~g 89 (108)
T 2dj4_A 45 LEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPS-QEGPYMVSVKYAD 89 (108)
T ss_dssp EEEEEECSSSCEECCCCEECSSSEEEEEECCS-SCEEEEEEEEESS
T ss_pred EEEEEECCCCCEeeeEEEECCCCEEEEEEEeC-CCeeEEEEEEECC
Confidence 344445664 23334445789999999866 5699999999864
No 90
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=35.18 E-value=55 Score=30.40 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=28.8
Q ss_pred CeEEEEEc-----CcccccchhHHHHHHHhCCceEEEecCCC
Q 013791 30 RRVLVLVD-----DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 30 ~r~LVl~d-----~~~~~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
+|++||+- +-.+........+-|+..||++++..|+.
T Consensus 24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~ 65 (242)
T 3l3b_A 24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNK 65 (242)
T ss_dssp CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 68999995 33445567778899999999999977754
No 91
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=35.11 E-value=1.3e+02 Score=23.31 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=45.4
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCc--eEEEecCCCCC--ccccccc-----ccccCEEEEeCCCCCcCCCCCCHH
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGF--QLEFKLADDPN--IGLQRYG-----QYLYDALVLFCPSVERFGGSIDVA 99 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf--~v~~~~~~d~~--~~L~~~g-----e~~yd~LII~~p~~~~~~~~l~~~ 99 (436)
+.|+||+=|+.... ..+.+.|+..|+ ++... .+.. +.....+ ...+|.+|+ +.... ..+--
T Consensus 2 ~~~ilivdd~~~~~---~~l~~~L~~~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~dlvi~-d~~~~----~~~g~ 71 (140)
T 1k68_A 2 HKKIFLVEDNKADI---RLIQEALANSTVPHEVVTV--RDGMEAMAYLRQEGEYANASRPDLILL-XLNLP----KKDGR 71 (140)
T ss_dssp CCEEEEECCCHHHH---HHHHHHHHTCSSCCEEEEE--CSHHHHHHHHTTCGGGGSCCCCSEEEE-CSSCS----SSCHH
T ss_pred CCeEEEEeCCHHHH---HHHHHHHHhcCCCceEEEE--CCHHHHHHHHHcccccccCCCCcEEEE-ecCCC----cccHH
Confidence 45666665654333 356677888999 66543 2221 2222221 145676555 43322 13443
Q ss_pred HHHHHHHC-----CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 100 SIVDFVDS-----GHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 100 ~L~~Fvd~-----GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
.+.+.+.+ .-.++++++....+.... +.+.|+
T Consensus 72 ~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~-~~~~g~ 108 (140)
T 1k68_A 72 EVLAEIKSDPTLKRIPVVVLSTSINEDDIFH-SYDLHV 108 (140)
T ss_dssp HHHHHHHHSTTGGGSCEEEEESCCCHHHHHH-HHHTTC
T ss_pred HHHHHHHcCcccccccEEEEecCCcHHHHHH-HHHhch
Confidence 44444443 234676666655444433 334553
No 92
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=34.42 E-value=1.5e+02 Score=26.77 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=54.4
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCc--CC---CCC----CHHHH
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER--FG---GSI----DVASI 101 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~--~~---~~l----~~~~L 101 (436)
|++||.... -+....|..-|+++|++++...+.... .+ ......||.|||.+.+... .. +-+ ..+.|
T Consensus 2 ~i~vi~h~~--~e~~g~~~~~l~~~g~~~~~~~~~~~~-~~-p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i 77 (236)
T 3l7n_A 2 RIHFILHET--FEAPGAYLAWAALRGHDVSMTKVYRYE-KL-PKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLI 77 (236)
T ss_dssp EEEEEECCT--TSCCHHHHHHHHHTTCEEEEEEGGGTC-CC-CSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHH
T ss_pred eEEEEeCCC--CCCchHHHHHHHHCCCeEEEEeeeCCC-CC-CCCccccCEEEECCCCCCcccccccCcccchHHHHHHH
Confidence 677777443 355667888899999999875432211 01 1122357999988654321 11 112 23566
Q ss_pred HHHHHCCCcEE-EEeCCCCcHHHHHHHHHcCceec
Q 013791 102 VDFVDSGHDLI-VAADSNASDLIREVATECGVDFD 135 (436)
Q Consensus 102 ~~Fvd~GGNiL-i~~~~~~~~~lr~ll~ElGI~~~ 135 (436)
.+.+++|--|| |-. +..-++..+|-.+.
T Consensus 78 ~~~~~~~~PvLGICl------G~QlL~~~~Gg~v~ 106 (236)
T 3l7n_A 78 QKAAKSEKIIVGVCL------GAQLMGVAYGADYL 106 (236)
T ss_dssp HHHHHTTCEEEEETH------HHHHHHHHTTCCCE
T ss_pred HHHHHcCCCEEEEch------HHHHHHHHhCCEEe
Confidence 67777776666 322 34556666765443
No 93
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=33.94 E-value=1.6e+02 Score=22.65 Aligned_cols=92 Identities=14% Similarity=0.280 Sum_probs=46.9
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC-
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG- 108 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G- 108 (436)
.|+||+=|+...+. .+...|+..||++... .+..-.+.......+|. ||++..-. ..+--.+.+.+.+.
T Consensus 3 ~~ILivdd~~~~~~---~l~~~l~~~g~~v~~~--~~~~~al~~l~~~~~dl-vllD~~~p----~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRK---IVSFNLKKEGYEVIEA--ENGQIALEKLSEFTPDL-IVLXIMMP----VMDGFTVLKKLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SSHHHHHHHHTTBCCSE-EEECSCCS----SSCHHHHHHHHHTST
T ss_pred ceEEEEeCCHHHHH---HHHHHHHHCCcEEEEe--CCHHHHHHHHHhcCCCE-EEEeccCC----CCcHHHHHHHHHhcc
Confidence 46666656554444 4555677889998743 23222233333445676 44444322 23444555555432
Q ss_pred ----CcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 109 ----HDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 109 ----GNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
-.++++++....+ ...-+.+.|.
T Consensus 73 ~~~~~pii~~s~~~~~~-~~~~~~~~Ga 99 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEE-DESLALSLGA 99 (122)
T ss_dssp TTTTSCEEEEESCCSHH-HHHHHHHTTC
T ss_pred cccCCCEEEEecCCchH-HHHHHHhcCh
Confidence 3466666555443 3344455554
No 94
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=32.98 E-value=1.2e+02 Score=23.77 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=47.4
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCc--eEEEecCCCCCcccccc-c-----c--cccCEEEEeCCCCCcCCCCC
Q 013791 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGF--QLEFKLADDPNIGLQRY-G-----Q--YLYDALVLFCPSVERFGGSI 96 (436)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf--~v~~~~~~d~~~~L~~~-g-----e--~~yd~LII~~p~~~~~~~~l 96 (436)
....|+|++=|+...+. .+...|+..|+ ++....-.++.+.+... + . ..+|.+|+ +.... ..
T Consensus 4 ~~~~~iLivdd~~~~~~---~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~-D~~l~----~~ 75 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFS---TFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILL-DLNLP----GT 75 (149)
T ss_dssp CTTSCEEEECCCHHHHH---HHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEE-CSCCS----SS
T ss_pred CCCccEEEEECCHHHHH---HHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEE-ECCCC----CC
Confidence 34567776666554333 46667788898 66543111111222221 1 0 45676555 43322 23
Q ss_pred CHHHHHHHHHCC-----CcEEEEeCCCCcHHHHHHHHHcC
Q 013791 97 DVASIVDFVDSG-----HDLIVAADSNASDLIREVATECG 131 (436)
Q Consensus 97 ~~~~L~~Fvd~G-----GNiLi~~~~~~~~~lr~ll~ElG 131 (436)
+--.+.+.+.+- -.++++++....+..... .+.|
T Consensus 76 ~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~-~~~g 114 (149)
T 1k66_A 76 DGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEIC-YSYS 114 (149)
T ss_dssp CHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHH-HHTT
T ss_pred CHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHH-HHCC
Confidence 445556666543 246666665554444433 3455
No 95
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=32.97 E-value=1.3e+02 Score=26.49 Aligned_cols=37 Identities=5% Similarity=0.070 Sum_probs=24.3
Q ss_pred eEEEEEcCccc-----ccchhHHHHHHHhC--CceEEEecCCCC
Q 013791 31 RVLVLVDDFAI-----KSSHSLYFGSLTSR--GFQLEFKLADDP 67 (436)
Q Consensus 31 r~LVl~d~~~~-----~~~~S~f~~~L~~r--Gf~v~~~~~~d~ 67 (436)
|+|++.-+... ...-..+.+.|+++ |.+++.....+.
T Consensus 3 kiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 3 RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp CEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSS
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 67888866432 12233578888887 999998755443
No 96
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=32.14 E-value=52 Score=26.02 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=44.3
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCC-HHHHHHHHH
Q 013791 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSID-VASIVDFVD 106 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~-~~~L~~Fvd 106 (436)
.+.|+||+=|+...+. .+...|+..||++... .+..-.+.......+|.+| .|..+. ++ .+.|.+.
T Consensus 17 ~~~~ilivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~al~~l~~~~~dlvi--~~~~~g----~~~~~~l~~~-- 83 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGG---EIEKGLNVKGFMADVT--ESLEDGEYLMDIRNYDLVM--VSDKNA----LSFVSRIKEK-- 83 (137)
T ss_dssp TCSEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SCHHHHHHHHHHSCCSEEE--ECSTTH----HHHHHHHHHH--
T ss_pred CCCeEEEEeCCHHHHH---HHHHHHHHcCcEEEEe--CCHHHHHHHHHcCCCCEEE--EcCccH----HHHHHHHHhc--
Confidence 3567666655544343 4566677789998743 2221122222223468777 222221 11 1444443
Q ss_pred C-CCcEEEEeCCCCcHHHHHHHHHcC
Q 013791 107 S-GHDLIVAADSNASDLIREVATECG 131 (436)
Q Consensus 107 ~-GGNiLi~~~~~~~~~lr~ll~ElG 131 (436)
. .-.++++++....+.... +.+.|
T Consensus 84 ~~~~~ii~ls~~~~~~~~~~-~~~~g 108 (137)
T 2pln_A 84 HSSIVVLVSSDNPTSEEEVH-AFEQG 108 (137)
T ss_dssp STTSEEEEEESSCCHHHHHH-HHHTT
T ss_pred CCCccEEEEeCCCCHHHHHH-HHHcC
Confidence 3 556777666554443433 33455
No 97
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=32.09 E-value=50 Score=28.50 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=43.0
Q ss_pred cchhHHHHHHHhCCceEEEecCC---------CCC----cccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--
Q 013791 43 SSHSLYFGSLTSRGFQLEFKLAD---------DPN----IGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (436)
Q Consensus 43 ~~~S~f~~~L~~rGf~v~~~~~~---------d~~----~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~-- 107 (436)
+....|.+.|++.||++..+... +.+ ++..... +.+|++||++.-++ | ..+.+-+.+
T Consensus 61 ~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a-~~~d~~vLvSgD~D-F------~plv~~lr~~~ 132 (165)
T 2qip_A 61 PKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA-PDVDRVILVSGDGD-F------SLLVERIQQRY 132 (165)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG-GGCSEEEEECCCGG-G------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh-ccCCEEEEEECChh-H------HHHHHHHHHHc
Confidence 45678999999999998764321 111 1111222 56788888887555 4 223333333
Q ss_pred CCcEEEEeCCC-CcHHHHH
Q 013791 108 GHDLIVAADSN-ASDLIRE 125 (436)
Q Consensus 108 GGNiLi~~~~~-~~~~lr~ 125 (436)
|-.+.+.+.+. .++.++.
T Consensus 133 G~~V~v~g~~~~~s~~L~~ 151 (165)
T 2qip_A 133 NKKVTVYGVPRLTSQTLID 151 (165)
T ss_dssp CCEEEEEECGGGSCHHHHH
T ss_pred CcEEEEEeCCCcChHHHHH
Confidence 66777776543 3444443
No 98
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=31.21 E-value=1.5e+02 Score=25.13 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=34.9
Q ss_pred cccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC----CCcEEEEeCC---CCcHHHHHHHHHc-Cceec
Q 013791 75 GQYLYDALVLFCPSVERFGGSIDVASIVDFVDS----GHDLIVAADS---NASDLIREVATEC-GVDFD 135 (436)
Q Consensus 75 ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~----GGNiLi~~~~---~~~~~lr~ll~El-GI~~~ 135 (436)
....||.|||-.|.-. +.+ +..+.+|+++ |..+.+.+.. .....++.+-+.+ |..+.
T Consensus 75 ~l~~yd~iilG~P~~~---g~~-~~~~~~fl~~~~l~gk~v~~f~t~g~~~~g~~~~~l~~~l~~~~~~ 139 (162)
T 3klb_A 75 HPEKYEVLFVGFPVWW---YIA-PTIINTFLESYDFAGKIVVPFATSGGSGIGNCEKNLHKAYPDIVWK 139 (162)
T ss_dssp CGGGCSEEEEEEECBT---TBC-CHHHHHHHHTSCCTTCEEEEEEECSSCCSHHHHHHHHHHCTTSEEC
T ss_pred ChhhCCEEEEEccccc---CCC-CHHHHHHHHhcCCCCCEEEEEEEeCCCCccHHHHHHHHHcCCCEee
Confidence 3456899999999764 223 4678899986 5566655432 3345566655555 44443
No 99
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=31.14 E-value=1.7e+02 Score=30.94 Aligned_cols=109 Identities=10% Similarity=0.093 Sum_probs=65.3
Q ss_pred CCCeEEEEEcCc-cc-ccchhHHHHHHHhCCceEEEecCCCCCcc-cccccccccCEEEEeCCCC-CcCCCCCCHHHHHH
Q 013791 28 TDRRVLVLVDDF-AI-KSSHSLYFGSLTSRGFQLEFKLADDPNIG-LQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVD 103 (436)
Q Consensus 28 ~~~r~LVl~d~~-~~-~~~~S~f~~~L~~rGf~v~~~~~~d~~~~-L~~~ge~~yd~LII~~p~~-~~~~~~l~~~~L~~ 103 (436)
.+++++|+|.+. +. +.-=..+.+.|+.+|+++....+++.+.. +.......++.+|+..|+. ..- ..-+.+.+.+
T Consensus 17 ~~~~i~I~YgS~tGnte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~vi~~~sT~G~G~-~pd~~~~F~~ 95 (618)
T 3qe2_A 17 TGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGD-PTDNAQDFYD 95 (618)
T ss_dssp HTCSEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEECBGGGB-CCGGGHHHHH
T ss_pred cCCeEEEEEECChhHHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcEEEEEcCccCCCC-CCHHHHHHHH
Confidence 357899999875 22 22233566778889999887655544332 3222222468888877765 311 1124577888
Q ss_pred HHHC------CCcEEEEe--CCCC------cHHHHHHHHHcCceecCC
Q 013791 104 FVDS------GHDLIVAA--DSNA------SDLIREVATECGVDFDED 137 (436)
Q Consensus 104 Fvd~------GGNiLi~~--~~~~------~~~lr~ll~ElGI~~~~~ 137 (436)
++.+ |-..-|++ +..- ...+...++++|-..--.
T Consensus 96 ~L~~~~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~ 143 (618)
T 3qe2_A 96 WLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFE 143 (618)
T ss_dssp HHHHCCCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred HHhhccccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeec
Confidence 8875 33333444 2222 467788899999887654
No 100
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=30.64 E-value=1.2e+02 Score=23.91 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=43.3
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH---C
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD---S 107 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd---~ 107 (436)
|+||+=|+...+ ..+...|+..||++....-.++.+.........+|.+|+ +..... .+.-.+.+.+. .
T Consensus 5 ~ilivdd~~~~~---~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~-d~~l~~----~~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 5 KILVIDDESTIL---QNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVIT-DMKMPK----LSGMDILREIKKITP 76 (143)
T ss_dssp EEEEECSCHHHH---HHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEE-ESCCSS----SCHHHHHHHHHHHCT
T ss_pred EEEEEcCCHHHH---HHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEE-eCCCCC----CcHHHHHHHHHHhCC
Confidence 555554544333 346666778899987542111112222221345677555 332221 23333333333 2
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 108 GHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 108 GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
.-.++++++....+.... +-+.|+
T Consensus 77 ~~~ii~ls~~~~~~~~~~-~~~~g~ 100 (143)
T 3jte_A 77 HMAVIILTGHGDLDNAIL-AMKEGA 100 (143)
T ss_dssp TCEEEEEECTTCHHHHHH-HHHTTC
T ss_pred CCeEEEEECCCCHHHHHH-HHHhCc
Confidence 345666666554433333 445553
No 101
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=30.59 E-value=1.8e+02 Score=25.67 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=61.6
Q ss_pred CeEEEEEcCcccccchh----HHHHHHHhCCceEE-EecCCCCCcccc----------------cccccccCEEEEeCCC
Q 013791 30 RRVLVLVDDFAIKSSHS----LYFGSLTSRGFQLE-FKLADDPNIGLQ----------------RYGQYLYDALVLFCPS 88 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S----~f~~~L~~rGf~v~-~~~~~d~~~~L~----------------~~ge~~yd~LII~~p~ 88 (436)
.|+|++.-+......-. .+.+.+ ..|.+++ .....| +.+. .......|.|||..|-
T Consensus 7 mkIl~I~GS~r~~s~t~~la~~~~~~~-~~g~~v~~~idL~~--lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~ 83 (199)
T 4hs4_A 7 LHFVTLLGSLRKASFNAAVARALPEIA-PEGIAITPLGSIGT--FPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPE 83 (199)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHHHHHC-CTTEEEEECCCGGG--SCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECC
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHc-cCCCEEEEEEehhh--cCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCc
Confidence 47888886653222111 233334 3588888 543322 1111 1123456999999996
Q ss_pred CCcCCCCCC--HHHHHHHHHC-------CCcEEE-EeCCCC------cHHHHHHHHHcCceecCCCCeEEEe
Q 013791 89 VERFGGSID--VASIVDFVDS-------GHDLIV-AADSNA------SDLIREVATECGVDFDEDPAAMVID 144 (436)
Q Consensus 89 ~~~~~~~l~--~~~L~~Fvd~-------GGNiLi-~~~~~~------~~~lr~ll~ElGI~~~~~~~~~VvD 144 (436)
-. .+++ .+...|++.. |--+++ .++.+. ...+|.++..+|+.+-+. ..+.+.
T Consensus 84 Y~---~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~~~a~~~Lr~il~~lg~~~v~~-~~v~i~ 151 (199)
T 4hs4_A 84 YN---YSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNR-PEAMIG 151 (199)
T ss_dssp BT---TBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCSHHHHHHHHHHHHHTTCEECCS-SCEEEC
T ss_pred cC---CCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcccHHHHHHHHHHHHHcCCEEcCC-CeEEee
Confidence 54 3344 3777777754 233443 333221 368999999999999985 334554
No 102
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.46 E-value=36 Score=27.85 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=38.1
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce---EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 311 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY---VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 311 ~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~---~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
+++...+|.|+-..- | .++++.+ +.+|- ++..++..++|+|.++|+ |+.-|.|+..|.|.-
T Consensus 37 ~~g~~~~F~V~~~da--G------~~~l~v~--v~~p~g~~~~~~v~d~~dGty~v~Y~-p~~~G~y~i~V~~~g 100 (119)
T 2e9j_A 37 PASLPVDFAIDARDA--G------EGLLAVQ--ITDQEGKPKRAIVHDNKDGTYAVTYI-PDKTGRYMIGVTYGG 100 (119)
T ss_dssp ETTSCEEEEEEESSC--C------CCCEECC--EECTTCCCCCEEEEECCSSEEEEEEC-CCSCSEEEECCEESS
T ss_pred ecCCcEEEEEEECCC--C------CCeEEEE--EECCCCCEEEEEEEECCCCEEEEEEE-eCCCEEEEEEEEECC
Confidence 456666666665431 1 1333333 33543 233444457899999999 566999999999864
No 103
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=30.42 E-value=69 Score=25.86 Aligned_cols=61 Identities=11% Similarity=0.281 Sum_probs=38.5
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce---EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 311 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY---VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 311 ~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~---~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
+.+...+|+|+-..- | .+.+++ .+.+|- +...+...++|+|.++|+.+. -|.|+..|.|.-
T Consensus 27 ~~~~~~~F~V~~~da--G------~~~l~V--~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~-~G~y~i~V~~~g 90 (115)
T 2d7m_A 27 PASLPVEFTIDARDA--G------EGLLTV--QILDPEGKPKKANIRDNGDGTYTVSYLPDM-SGRYTITIKYGG 90 (115)
T ss_dssp ESSSCEEEEEEESSS--C------SSCEEE--EEECTTSCBCCEEEEECSSSCEEEEECCCS-CEEEEEEEEESS
T ss_pred ccCCcEEEEEEECCC--C------CCEEEE--EEECCCCCeeeeEEEECCCCEEEEEEEeCC-CceEEEEEEECC
Confidence 456667777765532 1 133444 344553 333444457899999997555 599999999964
No 104
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=29.54 E-value=1e+02 Score=29.27 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCeEEEEEcCcc--------------cccchhHHHHHHHhCCceEEEecCCCC
Q 013791 29 DRRVLVLVDDFA--------------IKSSHSLYFGSLTSRGFQLEFKLADDP 67 (436)
Q Consensus 29 ~~r~LVl~d~~~--------------~~~~~S~f~~~L~~rGf~v~~~~~~d~ 67 (436)
++|+|+|+-+.. .........+-|+..||++++..++..
T Consensus 48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~ 100 (291)
T 1n57_A 48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL 100 (291)
T ss_dssp SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 468999986631 224566778889999999999877543
No 105
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=28.64 E-value=1.2e+02 Score=27.53 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=27.1
Q ss_pred CCeEEEEEcCcccc----cchhHHHHHHHhCCceEEEecCCCC
Q 013791 29 DRRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLADDP 67 (436)
Q Consensus 29 ~~r~LVl~d~~~~~----~~~S~f~~~L~~rGf~v~~~~~~d~ 67 (436)
+.|+|+|.-++... ..-..+.+.|+++|++|+.....+.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 46889998665432 2333588889989999998755443
No 106
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=28.43 E-value=40 Score=24.66 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceec
Q 013791 96 IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFD 135 (436)
Q Consensus 96 l~~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~ 135 (436)
++.++|++||.+-|-++ .++.+++.|||+-+
T Consensus 10 ~~e~~lL~yIr~sGGil---------dI~~~a~kygV~kd 40 (59)
T 2xvc_A 10 ITERELLDYIVNNGGFL---------DIEHFSKVYGVEKQ 40 (59)
T ss_dssp CCHHHHHHHHHHTTSEE---------EHHHHHHHHCCCHH
T ss_pred ccHHHHHHHHHHcCCEE---------eHHHHHHHhCCCHH
Confidence 78899999999877777 36778888887644
No 107
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=28.37 E-value=2.5e+02 Score=24.54 Aligned_cols=111 Identities=11% Similarity=0.147 Sum_probs=61.5
Q ss_pred CeEEEEEcCcccccchhHHHHHHH---hCCceEE-EecCCCCCc---------------ccccccccccCEEEEeCCCCC
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLT---SRGFQLE-FKLADDPNI---------------GLQRYGQYLYDALVLFCPSVE 90 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~---~rGf~v~-~~~~~d~~~---------------~L~~~ge~~yd~LII~~p~~~ 90 (436)
-|+|++.-+......-....+.+. ..|++++ .....|-.+ .-........|.+||..|.-.
T Consensus 5 mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP~y~ 84 (193)
T 3svl_A 5 LQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYN 84 (193)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEECCBT
T ss_pred CEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEecccC
Confidence 477887766543222223444443 3588887 543333110 001222344599999999654
Q ss_pred cCCCCCCH--HHHHHHHHC-------CCcEEEEe-CCCC------cHHHHHHHHHcCceecCCCCeEEEe
Q 013791 91 RFGGSIDV--ASIVDFVDS-------GHDLIVAA-DSNA------SDLIREVATECGVDFDEDPAAMVID 144 (436)
Q Consensus 91 ~~~~~l~~--~~L~~Fvd~-------GGNiLi~~-~~~~------~~~lr~ll~ElGI~~~~~~~~~VvD 144 (436)
.+++. +.+.|++.. |--+.+++ +.+. ...+|.++..+|+.+-|. ....+.
T Consensus 85 ---~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~~a~~~Lr~~l~~lg~~v~~~-~~~~~~ 150 (193)
T 3svl_A 85 ---YSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNK-PEFMGG 150 (193)
T ss_dssp ---TBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHTTCEECCS-SCEEET
T ss_pred ---CCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcchHHHHHHHHHHHHHCCCEEcCC-CeEeec
Confidence 22333 666666653 33344433 3221 367999999999999886 334443
No 108
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.35 E-value=1.1e+02 Score=24.91 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=43.5
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEecCC-CCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH---
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD--- 106 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~-d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd--- 106 (436)
|+||+=|+...+ ..+.+.|++.||++.....+ ++-+.+.....+.+|.+|+ +..... .+--.+.+.+.
T Consensus 38 ~Ilivdd~~~~~---~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliil-D~~l~~----~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 38 NVLIVDDSVFTV---KQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTL-XITMPK----MDGITCLSNIMEFD 109 (157)
T ss_dssp EEEEECSCHHHH---HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEE-CSSCSS----SCHHHHHHHHHHHC
T ss_pred EEEEEeCCHHHH---HHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEE-eccCCC----ccHHHHHHHHHhhC
Confidence 555554554333 34666677889998522111 1112222222225676554 443321 23333333333
Q ss_pred CCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 107 SGHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 107 ~GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
..-.|+++++....+.+. -+.+.|+
T Consensus 110 ~~~~ii~ls~~~~~~~~~-~~~~~g~ 134 (157)
T 3hzh_A 110 KNARVIMISALGKEQLVK-DCLIKGA 134 (157)
T ss_dssp TTCCEEEEESCCCHHHHH-HHHHTTC
T ss_pred CCCcEEEEeccCcHHHHH-HHHHcCC
Confidence 234566666655544433 3445553
No 109
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=28.28 E-value=1.3e+02 Score=23.56 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=43.7
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCC-ceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRG-FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rG-f~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G 108 (436)
.|+||+=|+...+ ..+...|++.| |++... .+..-.+.......+|.+|+ +.......+---.+.|++.- ..
T Consensus 15 ~~ilivdd~~~~~---~~l~~~L~~~g~~~v~~~--~~~~~a~~~l~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~-~~ 87 (135)
T 3snk_A 15 KQVALFSSDPNFK---RDVATRLDALAIYDVRVS--ETDDFLKGPPADTRPGIVIL-DLGGGDLLGKPGIVEARALW-AT 87 (135)
T ss_dssp EEEEEECSCHHHH---HHHHHHHHHTSSEEEEEE--CGGGGGGCCCTTCCCSEEEE-EEETTGGGGSTTHHHHHGGG-TT
T ss_pred cEEEEEcCCHHHH---HHHHHHHhhcCCeEEEEe--ccHHHHHHHHhccCCCEEEE-eCCCCCchHHHHHHHHHhhC-CC
Confidence 3555554554333 34666777889 998743 22222233334455687555 32222121211123343321 23
Q ss_pred CcEEEEeCCCCcHHHHHHHHHcC
Q 013791 109 HDLIVAADSNASDLIREVATECG 131 (436)
Q Consensus 109 GNiLi~~~~~~~~~lr~ll~ElG 131 (436)
--++++++....+.... +-+.|
T Consensus 88 ~~ii~~s~~~~~~~~~~-~~~~g 109 (135)
T 3snk_A 88 VPLIAVSDELTSEQTRV-LVRMN 109 (135)
T ss_dssp CCEEEEESCCCHHHHHH-HHHTT
T ss_pred CcEEEEeCCCCHHHHHH-HHHcC
Confidence 45666666554443333 33455
No 110
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=28.05 E-value=56 Score=25.86 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=35.7
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~ 107 (436)
..|+||+=|+...+ ..+...|++.||++... .+..-.+.......+|.+|+ +.... ..+--.+.+.+.+
T Consensus 6 ~~~iLivdd~~~~~---~~l~~~l~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-d~~l~----~~~g~~~~~~l~~ 74 (140)
T 3grc_A 6 RPRILICEDDPDIA---RLLNLMLEKGGFDSDMV--HSAAQALEQVARRPYAAMTV-DLNLP----DQDGVSLIRALRR 74 (140)
T ss_dssp CSEEEEECSCHHHH---HHHHHHHHHTTCEEEEE--CSHHHHHHHHHHSCCSEEEE-CSCCS----SSCHHHHHHHHHT
T ss_pred CCCEEEEcCCHHHH---HHHHHHHHHCCCeEEEE--CCHHHHHHHHHhCCCCEEEE-eCCCC----CCCHHHHHHHHHh
Confidence 34666655554333 34666777899998653 22211222223344676554 44332 2355556666654
No 111
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=28.00 E-value=1.5e+02 Score=26.30 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=24.4
Q ss_pred CeEEEEEcCcc-cccch-----hHHHHHHHhC--CceEEEecCCC
Q 013791 30 RRVLVLVDDFA-IKSSH-----SLYFGSLTSR--GFQLEFKLADD 66 (436)
Q Consensus 30 ~r~LVl~d~~~-~~~~~-----S~f~~~L~~r--Gf~v~~~~~~d 66 (436)
.|+|+|.-+.. .+..+ ..|.+.|+++ |++++.....+
T Consensus 5 ~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~ 49 (211)
T 3p0r_A 5 TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYK 49 (211)
T ss_dssp CEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGG
T ss_pred CEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 37888886654 12233 3578888887 99999864443
No 112
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=27.89 E-value=43 Score=30.77 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=36.0
Q ss_pred CeEEEEEcCccc--------ccchhHHHHHHHhCCceEEEecCCCC-CcccccccccccCEEEEeCCCC
Q 013791 30 RRVLVLVDDFAI--------KSSHSLYFGSLTSRGFQLEFKLADDP-NIGLQRYGQYLYDALVLFCPSV 89 (436)
Q Consensus 30 ~r~LVl~d~~~~--------~~~~S~f~~~L~~rGf~v~~~~~~d~-~~~L~~~ge~~yd~LII~~p~~ 89 (436)
.|+|||.-.+.. +.....+.+.|++.|++|+...+++. ++.-........|.||+..|--
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~~P~y 94 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAW 94 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEEEECB
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEECChH
Confidence 589999966532 12233567778889999998765431 1221222233447777777744
No 113
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=27.61 E-value=2.9e+02 Score=25.60 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=25.2
Q ss_pred CeEEEEEcCccc----ccchhHHHHHHHhCCceEEEecCCCC
Q 013791 30 RRVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDP 67 (436)
Q Consensus 30 ~r~LVl~d~~~~----~~~~S~f~~~L~~rGf~v~~~~~~d~ 67 (436)
.|+|||+-++.. +..-..+.+.|++.|++|+.....+.
T Consensus 3 mkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 378888866542 22333477778889999998655443
No 114
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=27.44 E-value=1.9e+02 Score=30.06 Aligned_cols=70 Identities=16% Similarity=0.355 Sum_probs=51.4
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce----EeeccccCCCceEEEEEecCCc--eeeeEEEEe
Q 013791 306 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTLSTDQKGHYSAEFKVPDV--YGVFQFKVE 379 (436)
Q Consensus 306 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~----~R~~L~~~~~~~y~~~f~~PD~--hGvf~f~v~ 379 (436)
+...||-.|.|+|.+=+- +.++.|.. + .+.+...||- .|..++ .+.|.|+..|+||+. -|.|+.++.
T Consensus 127 Dr~iYrPGqtV~~r~i~~---d~~~~p~~-~--~~~v~i~dp~g~~v~~~~~~-~~~G~~~~~f~Lp~~~~~G~w~i~v~ 199 (656)
T 4fxk_A 127 DQPIYNPGQRVRYRVFAL---DQKMRPST-D--TITVMVENSHGLRVRKKEVY-MPSSIFQDDFVIPDISEPGTWKISAR 199 (656)
T ss_dssp SCSEECTTCEEEEEEEEE---CSSSSBCC-C--CEEEEEECTTCCEEEEEEEC-CTTSEEEEEEECCTTCCSEEEEEEEE
T ss_pred CCCCcCCCCEEEEEEEEE---CCccCcCc-c--cceEEEECCCCcEEeeeEEe-cCCceEEEEecCCCCCCCcCEEEEEE
Confidence 455899999999998553 45677864 3 4456668993 233443 457999999999975 699999998
Q ss_pred eee
Q 013791 380 YQR 382 (436)
Q Consensus 380 Y~R 382 (436)
+..
T Consensus 200 ~~~ 202 (656)
T 4fxk_A 200 FSD 202 (656)
T ss_dssp ESS
T ss_pred EcC
Confidence 854
No 115
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.23 E-value=1.7e+02 Score=23.45 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=43.3
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013791 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd- 106 (436)
...|+||+=|+.... ..+...|+..||++... .+..-.+.......+|.+|+ +..... .+.-.+.+.+.
T Consensus 6 ~~~~iLivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-d~~l~~----~~g~~~~~~l~~ 75 (154)
T 2rjn_A 6 KNYTVMLVDDEQPIL---NSLKRLIKRLGCNIITF--TSPLDALEALKGTSVQLVIS-DMRMPE----MGGEVFLEQVAK 75 (154)
T ss_dssp SCCEEEEECSCHHHH---HHHHHHHHTTTCEEEEE--SCHHHHHHHHTTSCCSEEEE-ESSCSS----SCHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHH---HHHHHHHHHcCCeEEEe--CCHHHHHHHHhcCCCCEEEE-ecCCCC----CCHHHHHHHHHH
Confidence 345666665654333 34666777889998743 22211222222334677555 332221 23333333333
Q ss_pred --CCCcEEEEeCCCCcHHHHHHH
Q 013791 107 --SGHDLIVAADSNASDLIREVA 127 (436)
Q Consensus 107 --~GGNiLi~~~~~~~~~lr~ll 127 (436)
..-.++++++....+.....+
T Consensus 76 ~~~~~~ii~ls~~~~~~~~~~~~ 98 (154)
T 2rjn_A 76 SYPDIERVVISGYADAQATIDAV 98 (154)
T ss_dssp HCTTSEEEEEECGGGHHHHHHHH
T ss_pred hCCCCcEEEEecCCCHHHHHHHH
Confidence 234466665544444444443
No 116
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=26.82 E-value=1.6e+02 Score=23.56 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=44.0
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH--
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-- 106 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd-- 106 (436)
+.|+||+=|+.... ..+...|+..||++... .+..-.+.......+|.+|+ +..... .+.-.+.+-+.
T Consensus 3 ~~~ILivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dliil-d~~l~~----~~g~~~~~~l~~~ 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLR---KAMQQTLELAGFTVSSF--ASATEALAGLSADFAGIVIS-DIRMPG----MDGLALFRKILAL 72 (155)
T ss_dssp -CEEEEECSCHHHH---HHHHHHHHHTTCEEEEE--SCHHHHHHTCCTTCCSEEEE-ESCCSS----SCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHH---HHHHHHHHHcCcEEEEE--CCHHHHHHHHHhCCCCEEEE-eCCCCC----CCHHHHHHHHHhh
Confidence 34666665554333 34566677889998753 22211222222344676555 433221 23333333332
Q ss_pred -CCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 107 -SGHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 107 -~GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
..--++++++....+.... +-+.|+
T Consensus 73 ~~~~pii~ls~~~~~~~~~~-~~~~g~ 98 (155)
T 1qkk_A 73 DPDLPMILVTGHGDIPMAVQ-AIQDGA 98 (155)
T ss_dssp CTTSCEEEEECGGGHHHHHH-HHHTTC
T ss_pred CCCCCEEEEECCCChHHHHH-HHhcCC
Confidence 2445666665544433333 334553
No 117
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=26.81 E-value=1.2e+02 Score=23.41 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=44.3
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G 108 (436)
+.|+|++=|+...+. .+.+.|++.||++... .+..-.+.......+|.+|+ +.... ..+--.+.+.+.+.
T Consensus 6 ~~~ilivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlii~-d~~l~----~~~g~~~~~~l~~~ 75 (132)
T 3lte_A 6 SKRILVVDDDQAMAA---AIERVLKRDHWQVEIA--HNGFDAGIKLSTFEPAIMTL-DLSMP----KLDGLDVIRSLRQN 75 (132)
T ss_dssp -CEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SSHHHHHHHHHHTCCSEEEE-ESCBT----TBCHHHHHHHHHTT
T ss_pred CccEEEEECCHHHHH---HHHHHHHHCCcEEEEe--CCHHHHHHHHHhcCCCEEEE-ecCCC----CCCHHHHHHHHHhc
Confidence 456666655544443 4556677799998753 22211222223344676544 44332 13455555556543
Q ss_pred C----cEEEEeCCCCcHHHHHHHHHcCc
Q 013791 109 H----DLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 109 G----NiLi~~~~~~~~~lr~ll~ElGI 132 (436)
+ -.+++.+....+.+.. +.+.|+
T Consensus 76 ~~~~~~~ii~~~~~~~~~~~~-~~~~g~ 102 (132)
T 3lte_A 76 KVANQPKILVVSGLDKAKLQQ-AVTEGA 102 (132)
T ss_dssp TCSSCCEEEEECCSCSHHHHH-HHHHTC
T ss_pred CccCCCeEEEEeCCChHHHHH-HHHhCh
Confidence 2 2334444433443333 344453
No 118
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=26.77 E-value=1e+02 Score=27.27 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=59.3
Q ss_pred CCeEEEEEcCcccccch----hHHHH----HHHhC--CceEEEecCCCCCccc---------------ccccccccCEEE
Q 013791 29 DRRVLVLVDDFAIKSSH----SLYFG----SLTSR--GFQLEFKLADDPNIGL---------------QRYGQYLYDALV 83 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~----S~f~~----~L~~r--Gf~v~~~~~~d~~~~L---------------~~~ge~~yd~LI 83 (436)
-.|+|++.-+......- ..+.+ .|+++ |.+++.....|-.+.+ ........|.||
T Consensus 11 ~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iv 90 (191)
T 3k1y_A 11 MRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLV 90 (191)
T ss_dssp SEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEE
T ss_pred hceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEE
Confidence 35667776554432221 23444 56666 7888875433322211 122234569999
Q ss_pred EeCCCCCcCCCCCCHHHHHHHHH-------CCCcEEEEe-C--CCCc----HHHHHHHHHcCceecCCCCeEE
Q 013791 84 LFCPSVERFGGSIDVASIVDFVD-------SGHDLIVAA-D--SNAS----DLIREVATECGVDFDEDPAAMV 142 (436)
Q Consensus 84 I~~p~~~~~~~~l~~~~L~~Fvd-------~GGNiLi~~-~--~~~~----~~lr~ll~ElGI~~~~~~~~~V 142 (436)
|.+|.-- .+++. .|+.|+| .|..+.+++ + +... ..+|.++..+|+.+-|. +..+
T Consensus 91 i~sP~Y~---~~~~~-~lK~~iD~~~~~~l~gK~~~~v~t~G~~~~~~~~~~~L~~il~~lg~~vv~~-~v~~ 158 (191)
T 3k1y_A 91 VATPVFK---ASYTG-LFKMFFDILDTDALTGMPTIIAATAGSARHSLVLDYALRPLLSYMRAVVVPT-GVFA 158 (191)
T ss_dssp EEEECBT---TBSCH-HHHHHHHHSCTTTTTTCEEEEEEEESSSTTTTHHHHTHHHHHHHTTCEECSC-CEEE
T ss_pred EEcCccC---CcCcH-HHHHHHHHhhhhhcCCCEEEEEEeCCCcchhhHHHHHHHHHHHHCCCEEcCc-EEEe
Confidence 9999654 22333 4455554 233444333 2 1112 23999999999999886 5433
No 119
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.73 E-value=1.5e+02 Score=23.16 Aligned_cols=92 Identities=7% Similarity=-0.025 Sum_probs=45.1
Q ss_pred CeEEEEEcCcccccchhHHHHHHHh-CCceEEEecCCCCCcccccccc-cccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTS-RGFQLEFKLADDPNIGLQRYGQ-YLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~-rGf~v~~~~~~d~~~~L~~~ge-~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~ 107 (436)
.|+||+=|+...+. .+...|++ .||++... .+..-.+..... ..+|.+|+ +.... +..+--.+.+.+.+
T Consensus 5 ~~ilivdd~~~~~~---~l~~~L~~~~~~~v~~~--~~~~~a~~~l~~~~~~dlvi~-D~~l~---~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 5 GTVLLIDYFEYERE---KTKIIFDNIGEYDFIEV--ENLKKFYSIFKDLDSITLIIM-DIAFP---VEKEGLEVLSAIRN 75 (140)
T ss_dssp CEEEEECSCHHHHH---HHHHHHHHHCCCEEEEE--CSHHHHHTTTTTCCCCSEEEE-CSCSS---SHHHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHH---HHHHHHHhccCccEEEE--CCHHHHHHHHhcCCCCcEEEE-eCCCC---CCCcHHHHHHHHHh
Confidence 46666555554443 45566677 89998743 222212333333 55687655 33211 01233344444443
Q ss_pred -----CCcEEEEeCCCCcHHHHHHHHHcC
Q 013791 108 -----GHDLIVAADSNASDLIREVATECG 131 (436)
Q Consensus 108 -----GGNiLi~~~~~~~~~lr~ll~ElG 131 (436)
.-.++++++....+.... +.+.|
T Consensus 76 ~~~~~~~~ii~ls~~~~~~~~~~-~~~~g 103 (140)
T 3lua_A 76 NSRTANTPVIIATKSDNPGYRHA-ALKFK 103 (140)
T ss_dssp SGGGTTCCEEEEESCCCHHHHHH-HHHSC
T ss_pred CcccCCCCEEEEeCCCCHHHHHH-HHHcC
Confidence 445666666555444433 33555
No 120
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=26.68 E-value=2e+02 Score=25.53 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=52.4
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhC-CceEEEecCCCC-----Ccccc-----cccccccCEEEEeCCCCCcCCCCCC-
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSR-GFQLEFKLADDP-----NIGLQ-----RYGQYLYDALVLFCPSVERFGGSID- 97 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~r-Gf~v~~~~~~d~-----~~~L~-----~~ge~~yd~LII~~p~~~~~~~~l~- 97 (436)
+|+++++-+.-+..+.....+.|+.+ ||++++..++.. .+.+. ..-...||.|||-....... .+-.
T Consensus 4 ~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~~~-~~~~l 82 (206)
T 3f5d_A 4 KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSN-DNKKL 82 (206)
T ss_dssp EEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCC-CCHHH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCChhh-cCHHH
Confidence 47777775544445666788888887 999998776543 11111 11123689988855432211 1001
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 98 VASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 98 ~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
.+-|+++.++|.-|. +...+ -.+|.+.|+
T Consensus 83 ~~~l~~~~~~gk~ia-aiC~G-----~~~La~aGL 111 (206)
T 3f5d_A 83 LHFVKTAFQKNIPIA-AICGA-----VDFLAKNGL 111 (206)
T ss_dssp HHHHHHHHHTTCCEE-EETHH-----HHHHHHTTT
T ss_pred HHHHHHHHHcCCEEE-EECHH-----HHHHHHcCC
Confidence 144555556665444 32211 146677774
No 121
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=26.68 E-value=1.1e+02 Score=27.67 Aligned_cols=102 Identities=10% Similarity=-0.007 Sum_probs=57.1
Q ss_pred EEEEEcCcccccchhHHHHHHHhCCce--EEEecCCCCCcccccccccccCEEEEeCCCCCcCC-CCCC-----------
Q 013791 32 VLVLVDDFAIKSSHSLYFGSLTSRGFQ--LEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFG-GSID----------- 97 (436)
Q Consensus 32 ~LVl~d~~~~~~~~S~f~~~L~~rGf~--v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~-~~l~----------- 97 (436)
.++-+|-.. .......+.++..|.+ +++...+-.++ ........||.+|..+|=...-+ +..+
T Consensus 74 ~v~gvDi~~--~~~~~a~~n~~~~~~~~~v~~~~~D~~~~-~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~ 150 (259)
T 3lpm_A 74 KIVGVEIQE--RLADMAKRSVAYNQLEDQIEIIEYDLKKI-TDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHE 150 (259)
T ss_dssp EEEEECCSH--HHHHHHHHHHHHTTCTTTEEEECSCGGGG-GGTSCTTCEEEEEECCCC---------------------
T ss_pred cEEEEECCH--HHHHHHHHHHHHCCCcccEEEEECcHHHh-hhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhcc
Confidence 556666532 2233344555555654 66543221111 11123467899888776322100 0001
Q ss_pred --------HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 013791 98 --------VASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDE 136 (436)
Q Consensus 98 --------~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElGI~~~~ 136 (436)
.+.+.+.+..||.+++...+.....+...+++.|+++..
T Consensus 151 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 151 VMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp --HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred ccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence 145566677899999888887777888999999987655
No 122
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=26.21 E-value=48 Score=29.34 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=26.7
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecC
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLA 64 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~ 64 (436)
.|++|++-+--+.-+.....+-|+..|++++...+
T Consensus 5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~ 39 (194)
T 4gdh_A 5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYV 39 (194)
T ss_dssp CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 57888886555555677888899999999987544
No 123
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=26.12 E-value=63 Score=27.24 Aligned_cols=106 Identities=10% Similarity=0.004 Sum_probs=57.8
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCC-ceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCC--HHHHH
Q 013791 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRG-FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSID--VASIV 102 (436)
Q Consensus 26 ~~~~~r~LVl~d~~~~~~~~S~f~~~L~~rG-f~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~--~~~L~ 102 (436)
...|+|+|.|-+....-+.-....+..+++- -.+++...+-.++.+..+.+..||.++.... ...+..+.. .+.+.
T Consensus 10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~-l~~~~~~~~~~l~~~~ 88 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV-PGSTTLHSAEILAEIA 88 (176)
T ss_dssp CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCS-TTCCCCCCHHHHHHHH
T ss_pred CCCCCEEEEecCCceeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECCh-hhhcccCHHHHHHHHH
Confidence 3468999999887644333344555555431 1255543222222221124556898775432 222211122 26777
Q ss_pred HHHHCCCcEEEEeCC----------CCcHHHHHHHHHcCc
Q 013791 103 DFVDSGHDLIVAADS----------NASDLIREVATECGV 132 (436)
Q Consensus 103 ~Fvd~GGNiLi~~~~----------~~~~~lr~ll~ElGI 132 (436)
+-+..||.+++.... ...+.+...+++.|.
T Consensus 89 r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 89 RILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp HHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred HHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 788899988874321 013567888888887
No 124
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.00 E-value=86 Score=24.88 Aligned_cols=46 Identities=13% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCeEEEEEEeCc-eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 336 DDVQVQFYMMSP-YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 336 ddiQlEf~mldP-~~R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
.|+..+.++-+- -.+..++..++|+|.++|+ |..-|.|+..|.|.-
T Consensus 30 ~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~yt-P~e~G~h~v~V~~~G 76 (95)
T 2ee9_A 30 GEITGEVHMPSGKTATPEIVDNKDGTVTVRYA-PTEVGLHEMHIKYMG 76 (95)
T ss_dssp TSEEEEEECTTSCEECCEEEECSSSCEEEECC-CCSSEEEEEEEEESS
T ss_pred CCEEEEEECCCCCccccEEEeCCCCeEEEEEE-ecCCEeEEEEEEECC
Confidence 556555554431 2233344457899999985 888999999999974
No 125
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=25.96 E-value=1.5e+02 Score=23.61 Aligned_cols=32 Identities=13% Similarity=0.410 Sum_probs=24.7
Q ss_pred eeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 350 LKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 350 R~~L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
...++..++|+|.++|+. ..-|.|+..|.|.-
T Consensus 57 ~~~v~d~~dGty~v~Y~p-~~~G~y~i~V~~~g 88 (113)
T 2dia_A 57 EVSIQNNKDGTYAVTYVP-LTAGMYTLTMKYGG 88 (113)
T ss_dssp EEEEEECTTSEEEEEEEC-SSCEEEEEEEEETT
T ss_pred eEEEEECCCCEEEEEEEe-CCCccEEEEEEECC
Confidence 344455678999999975 56799999999864
No 126
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=25.56 E-value=30 Score=34.36 Aligned_cols=72 Identities=24% Similarity=0.241 Sum_probs=44.0
Q ss_pred HHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCH---HHHHHHHHCCCcEEEEeCCCCcHHHH
Q 013791 48 YFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDV---ASIVDFVDSGHDLIVAADSNASDLIR 124 (436)
Q Consensus 48 f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~---~~L~~Fvd~GGNiLi~~~~~~~~~lr 124 (436)
.++.|+.+|++.+...+-+ ..+..||.++|.-|+.+.. ..-. ..+...+..||.|+++++.. +.++
T Consensus 78 ~~~~l~~~~~~~~~~~~~~-------~~~~~~d~v~~~~Pk~k~~--~~~~~~l~~~~~~l~~g~~i~~~g~~~--~g~~ 146 (381)
T 3dmg_A 78 AFRCLTASGLQARLALPWE-------AAAGAYDLVVLALPAGRGT--AYVQASLVAAARALRMGGRLYLAGDKN--KGFE 146 (381)
T ss_dssp HHHHHHHTTCCCEECCGGG-------SCTTCEEEEEEECCGGGCH--HHHHHHHHHHHHHEEEEEEEEEEEEGG--GTHH
T ss_pred HHHHHHHcCCCccccCCcc-------CCcCCCCEEEEECCcchhH--HHHHHHHHHHHHhCCCCCEEEEEEccH--HHHH
Confidence 3445999999986432211 2345679999999987632 0111 44456667899999888543 2344
Q ss_pred HHHHHc
Q 013791 125 EVATEC 130 (436)
Q Consensus 125 ~ll~El 130 (436)
.++.++
T Consensus 147 ~~~~~~ 152 (381)
T 3dmg_A 147 RYFKEA 152 (381)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 127
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=24.65 E-value=1.8e+02 Score=26.82 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=26.7
Q ss_pred CeEEEEEcCc-cc-----------ccchhHHHHHHHhCCceEEEecCCC
Q 013791 30 RRVLVLVDDF-AI-----------KSSHSLYFGSLTSRGFQLEFKLADD 66 (436)
Q Consensus 30 ~r~LVl~d~~-~~-----------~~~~S~f~~~L~~rGf~v~~~~~~d 66 (436)
+|+|+++-+. .. ......-++.|++.|++|++..|+.
T Consensus 4 ~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g 52 (244)
T 3kkl_A 4 KRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETG 52 (244)
T ss_dssp CEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6888888652 10 1355568889999999999976653
No 128
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.35 E-value=1.4e+02 Score=23.34 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=44.2
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~-- 107 (436)
.|+||+=|+...+ ..+...|+..||++... .+..-.+.......+|.+|+-. ... .+.-.+.+.+.+
T Consensus 5 ~~iLivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~d~--~~~----~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 5 PTVMVVDESRITF---LAVKNALEKDGFNVIWA--KNEQEAFTFLRREKIDLVFVDV--FEG----EESLNLIRRIREEF 73 (142)
T ss_dssp CEEEEECSCHHHH---HHHHHHHGGGTCEEEEE--SSHHHHHHHHTTSCCSEEEEEC--TTT----HHHHHHHHHHHHHC
T ss_pred CeEEEEeCCHHHH---HHHHHHHHhCCCEEEEE--CCHHHHHHHHhccCCCEEEEeC--CCC----CcHHHHHHHHHHHC
Confidence 4666665554333 34666777889998743 2221123322334568766643 221 222233333332
Q ss_pred -CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 108 -GHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 108 -GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
.-.++++++....+... -+.+.|+
T Consensus 74 ~~~pii~ls~~~~~~~~~-~~~~~g~ 98 (142)
T 2qxy_A 74 PDTKVAVLSAYVDKDLII-NSVKAGA 98 (142)
T ss_dssp TTCEEEEEESCCCHHHHH-HHHHHTC
T ss_pred CCCCEEEEECCCCHHHHH-HHHHCCc
Confidence 34466666555443333 3444554
No 129
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=24.30 E-value=1e+02 Score=25.37 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=23.5
Q ss_pred cccCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 353 LSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 353 L~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
++..++|+|.++|+.+. -|-|+..|.|.-
T Consensus 61 v~d~~dGty~V~Y~p~~-~G~y~I~V~~~g 89 (124)
T 2dmb_A 61 VIENEDGTYDIFYTAAK-PGTYVIYVRFGG 89 (124)
T ss_dssp EEECTTSCEEEEEECSS-CEEEEEEEEESS
T ss_pred EEeCCCCEEEEEEEcCC-CEEEEEEEEECC
Confidence 33357899999999775 599999999964
No 130
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=24.12 E-value=97 Score=24.99 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=43.2
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH--
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-- 106 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd-- 106 (436)
..|+||+=|+.... ..+...|+..||++... .+..-.+.......+|.+|+ +..... .+--.+.+.+.
T Consensus 14 ~~~ILivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-D~~l~~----~~g~~~~~~l~~~ 83 (153)
T 3hv2_A 14 RPEILLVDSQEVIL---QRLQQLLSPLPYTLHFA--RDATQALQLLASREVDLVIS-AAHLPQ----MDGPTLLARIHQQ 83 (153)
T ss_dssp CCEEEEECSCHHHH---HHHHHHHTTSSCEEEEE--SSHHHHHHHHHHSCCSEEEE-ESCCSS----SCHHHHHHHHHHH
T ss_pred CceEEEECCCHHHH---HHHHHHhcccCcEEEEE--CCHHHHHHHHHcCCCCEEEE-eCCCCc----CcHHHHHHHHHhH
Confidence 44555555554333 35667778889998753 22211222223345687555 332221 23323333332
Q ss_pred -CCCcEEEEeCCCCcHHHHHHHHHcC
Q 013791 107 -SGHDLIVAADSNASDLIREVATECG 131 (436)
Q Consensus 107 -~GGNiLi~~~~~~~~~lr~ll~ElG 131 (436)
..-.++++++....+..... -+.|
T Consensus 84 ~~~~~ii~~s~~~~~~~~~~~-~~~g 108 (153)
T 3hv2_A 84 YPSTTRILLTGDPDLKLIAKA-INEG 108 (153)
T ss_dssp CTTSEEEEECCCCCHHHHHHH-HHTT
T ss_pred CCCCeEEEEECCCCHHHHHHH-HhCC
Confidence 23345555555544444333 3444
No 131
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=23.77 E-value=2.7e+02 Score=29.73 Aligned_cols=110 Identities=11% Similarity=0.016 Sum_probs=67.0
Q ss_pred CCeEEEEEcCcc-c-ccchhHHHHHHH-hCCceEEEecCCCCCccccccccccc-CEEEEeCCCC-CcCCCCCCHHHHHH
Q 013791 29 DRRVLVLVDDFA-I-KSSHSLYFGSLT-SRGFQLEFKLADDPNIGLQRYGQYLY-DALVLFCPSV-ERFGGSIDVASIVD 103 (436)
Q Consensus 29 ~~r~LVl~d~~~-~-~~~~S~f~~~L~-~rGf~v~~~~~~d~~~~L~~~ge~~y-d~LII~~p~~-~~~~~~l~~~~L~~ 103 (436)
..+++|+|.+.. . +.-=..+.+.|+ ..|+++.....++.+..- ...| |.+|+..|+. ..- ..-+.+.+.+
T Consensus 49 ~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~----l~~~~~~vi~~~sT~G~G~-~p~~~~~F~~ 123 (682)
T 2bpo_A 49 NKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFES----LNDVPVIVSIFISTYGEGD-FPDGAVNFED 123 (682)
T ss_dssp TCSEEEEEECSSSHHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGG----GGGCCSEEEEEEECBTTTB-CCSSCHHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHhHHhcCCceEEeehHHCCHHH----HhhcCCeEEEEeCccCCCC-CCHHHHHHHH
Confidence 568999998752 2 222234566777 779999877666643321 1245 8888888876 311 1234577788
Q ss_pred HHHCC-------CcEEEEe-C-CC------CcHHHHHHHHHcCceecCCCCeEEEec
Q 013791 104 FVDSG-------HDLIVAA-D-SN------ASDLIREVATECGVDFDEDPAAMVIDH 145 (436)
Q Consensus 104 Fvd~G-------GNiLi~~-~-~~------~~~~lr~ll~ElGI~~~~~~~~~VvDh 145 (436)
++.+. -+.-+.+ + .. ....+...++++|...--. . ..+|-
T Consensus 124 ~l~~~~~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~-~-~~~D~ 178 (682)
T 2bpo_A 124 FICNAEAGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGK-L-GEADD 178 (682)
T ss_dssp HHHTCCTTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSC-C-EEEET
T ss_pred HHHhccchhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeEC-c-EEEec
Confidence 87642 2333433 2 21 1468889999999987765 2 34553
No 132
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.74 E-value=2e+02 Score=22.28 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=44.9
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHh-CCce-EEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHH
Q 013791 28 TDRRVLVLVDDFAIKSSHSLYFGSLTS-RGFQ-LEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFV 105 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~f~~~L~~-rGf~-v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fv 105 (436)
...|+||+=|+...+ ..+...|+. .||+ +... .+..-.+.......+|.+|+ +.... ..+.-.+.+.+
T Consensus 7 ~~~~iLivdd~~~~~---~~l~~~L~~~~~~~~v~~~--~~~~~a~~~l~~~~~dlii~-d~~l~----~~~g~~~~~~l 76 (143)
T 3cnb_A 7 NDFSILIIEDDKEFA---DMLTQFLENLFPYAKIKIA--YNPFDAGDLLHTVKPDVVML-DLMMV----GMDGFSICHRI 76 (143)
T ss_dssp --CEEEEECSCHHHH---HHHHHHHHHHCTTCEEEEE--CSHHHHHHHHHHTCCSEEEE-ETTCT----TSCHHHHHHHH
T ss_pred CCceEEEEECCHHHH---HHHHHHHHhccCccEEEEE--CCHHHHHHHHHhcCCCEEEE-ecccC----CCcHHHHHHHH
Confidence 345666665554333 356667777 8999 6543 12111122222234576555 43222 23455566666
Q ss_pred HC---C--CcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 106 DS---G--HDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 106 d~---G--GNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
.+ . --++++++....+.... +.+.|+
T Consensus 77 ~~~~~~~~~~ii~~s~~~~~~~~~~-~~~~g~ 107 (143)
T 3cnb_A 77 KSTPATANIIVIAMTGALTDDNVSR-IVALGA 107 (143)
T ss_dssp HTSTTTTTSEEEEEESSCCHHHHHH-HHHTTC
T ss_pred HhCccccCCcEEEEeCCCCHHHHHH-HHhcCC
Confidence 55 2 23555555554443333 335553
No 133
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=23.71 E-value=1.8e+02 Score=24.07 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHCCCcEEEEeC-C----CCcHHHHHHHHHcCceecCC
Q 013791 95 SIDVASIVDFVDSGHDLIVAAD-S----NASDLIREVATECGVDFDED 137 (436)
Q Consensus 95 ~l~~~~L~~Fvd~GGNiLi~~~-~----~~~~~lr~ll~ElGI~~~~~ 137 (436)
+++.+.+..+++.+=.++|.+. . ..++.++..+++.||.++.-
T Consensus 48 ~l~~~~l~~ll~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m 95 (122)
T 2ab1_A 48 GVQPADVKEVVEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVL 95 (122)
T ss_dssp CCCHHHHHHHHTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEE
T ss_pred HCCHHHHHHHhhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEe
Confidence 4888999999999989997763 1 24689999999999887653
No 134
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=23.41 E-value=1.7e+02 Score=23.13 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=43.4
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCC-ceEEEecCCCCCcccccccc--cccCEEEEeCCCCCcCCCCCCHHHHHHHH
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRG-FQLEFKLADDPNIGLQRYGQ--YLYDALVLFCPSVERFGGSIDVASIVDFV 105 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rG-f~v~~~~~~d~~~~L~~~ge--~~yd~LII~~p~~~~~~~~l~~~~L~~Fv 105 (436)
+.|+||+=|+...+. .+...|+..| |++... .+..-.+..... ..+|.+|+ +.... ..+--.+.+.+
T Consensus 20 ~~~ilivdd~~~~~~---~l~~~L~~~g~~~v~~~--~~~~~~~~~~~~~~~~~dlvi~-D~~l~----~~~g~~~~~~l 89 (146)
T 4dad_A 20 MINILVASEDASRLA---HLARLVGDAGRYRVTRT--VGRAAQIVQRTDGLDAFDILMI-DGAAL----DTAELAAIEKL 89 (146)
T ss_dssp GCEEEEECSCHHHHH---HHHHHHHHHCSCEEEEE--CCCHHHHTTCHHHHTTCSEEEE-ECTTC----CHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHH---HHHHHHhhCCCeEEEEe--CCHHHHHHHHHhcCCCCCEEEE-eCCCC----CccHHHHHHHH
Confidence 456665555544443 4556677778 998764 222112222222 45676555 33222 12222233333
Q ss_pred H-C--CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 106 D-S--GHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 106 d-~--GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
. . .-.++++++....+.....+ +.|+
T Consensus 90 ~~~~~~~~ii~lt~~~~~~~~~~~~-~~ga 118 (146)
T 4dad_A 90 SRLHPGLTCLLVTTDASSQTLLDAM-RAGV 118 (146)
T ss_dssp HHHCTTCEEEEEESCCCHHHHHHHH-TTTE
T ss_pred HHhCCCCcEEEEeCCCCHHHHHHHH-HhCC
Confidence 2 2 34466666655544443333 4554
No 135
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=23.40 E-value=1.4e+02 Score=28.26 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCcccc----cchhHHHHHHHhCCceEEEec
Q 013791 28 TDRRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKL 63 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~----~~~S~f~~~L~~rGf~v~~~~ 63 (436)
+.-|+|||+-.+..+ .....+.+.|+++|++|+...
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 467999999765432 233468899999999999864
No 136
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=23.22 E-value=2.7e+02 Score=25.42 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=58.6
Q ss_pred CCCeEEEEEcC-cccccchhHHHHHHHhCCceEEEecCCCCCc--cccccccccc---CEEEEeCCCCCcCCCCCCHHHH
Q 013791 28 TDRRVLVLVDD-FAIKSSHSLYFGSLTSRGFQLEFKLADDPNI--GLQRYGQYLY---DALVLFCPSVERFGGSIDVASI 101 (436)
Q Consensus 28 ~~~r~LVl~d~-~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~--~L~~~ge~~y---d~LII~~p~~~~~~~~l~~~~L 101 (436)
.|+++.+|..+ +..-...+...+.|.++|++++.. |.=+++ ....-|.+.+ +.+.+++.+ . ..+.|
T Consensus 95 ~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~vi-PGiSs~~aa~a~~G~pl~~~~~~~~~~~~~-~------~~~~l 166 (259)
T 2e0n_A 95 AGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMT-PGIPAFIAAGSAAGMPLALQSDSVLVLAQI-D------EIGEL 166 (259)
T ss_dssp TTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEE-CCCCHHHHHHHHTTCCSBCTTCCEEEECSC-S------STHHH
T ss_pred CCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEe-CChhHHHHHHHhcCCCCcCCCceEEEEcCC-C------CHHHH
Confidence 35666666632 345566777888999999998864 332222 2346666653 344444332 2 13567
Q ss_pred HHHHHCCCcEEEEeCCCCcHHHHHHHHHcC
Q 013791 102 VDFVDSGHDLIVAADSNASDLIREVATECG 131 (436)
Q Consensus 102 ~~Fvd~GGNiLi~~~~~~~~~lr~ll~ElG 131 (436)
.+.++.++.+.+..++.....+...+.+.|
T Consensus 167 ~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g 196 (259)
T 2e0n_A 167 ERALVTHSTVVVMKLSTVRDELVSFLERYA 196 (259)
T ss_dssp HHHHTTCSEEEECCTTSSGGGHHHHHHHHC
T ss_pred HHHhhcCCEEEEEcccccHHHHHHHHHhCC
Confidence 788887776666666666566666666777
No 137
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=22.54 E-value=89 Score=33.16 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=42.5
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCceE----eeccccCCCceEEEEEecCCc--eeeeEEEEe
Q 013791 306 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYV----LKTLSTDQKGHYSAEFKVPDV--YGVFQFKVE 379 (436)
Q Consensus 306 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~~----R~~L~~~~~~~y~~~f~~PD~--hGvf~f~v~ 379 (436)
+...||-.|.|.|.+=.- +.+|.|. ...+ .+...||-- |..++. . |+..|+||+. -|.|+.++.
T Consensus 111 Dr~iYrPGqtV~~r~i~~---d~~~~p~-~~~~--~v~i~dP~g~~i~~~~~~~---~-~~~~f~Lp~~~~~G~w~i~v~ 180 (627)
T 3hrz_A 111 DKGIYTPGSPVLYRVFSM---DHNTSKM-NKTV--IVEFQTPEGILVSSNSVDL---N-FFWPYNLPDLVSLGTWRIVAK 180 (627)
T ss_dssp SCSEECTTCEECEEEEES---CC--------CE--EEEEECTTCCEEEEEEEBT---T-BCCCEECCSSCCCEEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEE---CCCCccc-CccE--EEEEECCCCCEEEEEEecc---c-eEEEEECCCCCCCeeEEEEEE
Confidence 344699999999987664 3577887 3444 455678843 333332 2 8889999995 799999998
Q ss_pred eee
Q 013791 380 YQR 382 (436)
Q Consensus 380 Y~R 382 (436)
+..
T Consensus 181 ~~~ 183 (627)
T 3hrz_A 181 YEH 183 (627)
T ss_dssp ETT
T ss_pred ECC
Confidence 864
No 138
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=22.50 E-value=1.3e+02 Score=25.47 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=56.8
Q ss_pred cCcCceeEeeeeEEeecCCCC-CCcceEeCC----ceEEEEE--EEEEeCCeeeecccCC-eEEEEEEeCceEeecccc-
Q 013791 285 FHERGHLKAVNVRHHKVGESD-EPAIYRIND----DLEYSVE--IYEWSGTSWEPYVSDD-VQVQFYMMSPYVLKTLST- 355 (436)
Q Consensus 285 F~e~gvLr~~~~~H~~~~~~~-~~~~Y~i~d----~v~y~i~--i~e~~~~~W~P~~~dd-iQlEf~mldP~~R~~L~~- 355 (436)
.|.+-|+||+++.-+|.+++. +...+.|+- .+.++-. =.++.+++|-|.-.+. +++-|.. | ...+.|++
T Consensus 10 ~~gd~vwkIs~F~~RKpeGty~nsvsFnI~aTn~gtldftCsa~ad~~eD~~~Y~CGens~~sFsf~s-d-~~gLll~~~ 87 (133)
T 3v0r_A 10 TEGDYVWKISEFYGRKPEGTYYNSLGFNIKATNGGTLDFTCSAQADKLEDHKWYSCGENSFMDFSFDS-D-RSGLLLKQK 87 (133)
T ss_dssp CCCTTEEEEEEEEEEETTSSSCSEEEEEEEESSSCCCEEEEEEECSSCCTTCCEESSSSCSCEEEEEG-G-GTEEEEEEE
T ss_pred cCCceEEEeeeeeeEcCCCCceeeEEEEEEecCCCceeeeEeccCCCCccCceEECCCCceEEEEEEc-c-cccEEEEee
Confidence 356679999999999998765 555566643 3333333 3456778999997777 8998887 2 22355554
Q ss_pred -CCCceEEEEEecCC
Q 013791 356 -DQKGHYSAEFKVPD 369 (436)
Q Consensus 356 -~~~~~y~~~f~~PD 369 (436)
...-.|..+-.||+
T Consensus 88 ~s~~~~~~Gt~~iP~ 102 (133)
T 3v0r_A 88 VSDDITYVATATLPN 102 (133)
T ss_dssp CSSSCEEEEEEECCE
T ss_pred cCCCeeEEEeeccch
Confidence 34567888888986
No 139
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.47 E-value=27 Score=26.34 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=19.8
Q ss_pred ccCCcchhhHHHHHHHHHhhheeeeec
Q 013791 408 LPAAYPYYGSAFSMMAGFFIFTIVHLY 434 (436)
Q Consensus 408 i~~a~pyy~s~~s~~~g~~~F~~~~L~ 434 (436)
+..+||.+.-+...++|+++|..+.++
T Consensus 3 l~~~~p~~LivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 3 LVPRGSMALIVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 467899887677777788777665543
No 140
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.42 E-value=1.3e+02 Score=22.20 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=39.0
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~-- 107 (436)
.|+|++=|+.... ..+.+.|+..||++... .+..-.+..-....+|.+|+- .... ..+.-.+.+-+.+
T Consensus 2 ~~iliv~~~~~~~---~~l~~~l~~~g~~v~~~--~~~~~~~~~l~~~~~dlii~d-~~~~----~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 2 GHILLLEEEDEAA---TVVCEMLTAAGFKVIWL--VDGSTALDQLDLLQPIVILMA-WPPP----DQSCLLLLQHLREHQ 71 (119)
T ss_dssp CEEEEECCCHHHH---HHHHHHHHHTTCEEEEE--SCHHHHHHHHHHHCCSEEEEE-CSTT----CCTHHHHHHHHHHTC
T ss_pred CEEEEEeCCHHHH---HHHHHHHHhCCcEEEEe--cCHHHHHHHHHhcCCCEEEEe-cCCC----CCCHHHHHHHHHhcc
Confidence 4556555544333 35666777889998753 222111222222346776653 3222 1344444555543
Q ss_pred ---CCcEEEEeCCCCc
Q 013791 108 ---GHDLIVAADSNAS 120 (436)
Q Consensus 108 ---GGNiLi~~~~~~~ 120 (436)
.-.++++++....
T Consensus 72 ~~~~~~ii~~~~~~~~ 87 (119)
T 2j48_A 72 ADPHPPLVLFLGEPPV 87 (119)
T ss_dssp CCSSCCCEEEESSCCS
T ss_pred ccCCCCEEEEeCCCCc
Confidence 2345655554433
No 141
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=22.11 E-value=2.9e+02 Score=21.93 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=42.0
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCC--cccccc-c----ccccCEEEEeCCCCCcCCCCCCHHHHH
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN--IGLQRY-G----QYLYDALVLFCPSVERFGGSIDVASIV 102 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~--~~L~~~-g----e~~yd~LII~~p~~~~~~~~l~~~~L~ 102 (436)
.|+|++=|+...+. .+...|+..|+........+.. +.+... + ...+|.+| ++-.-.. .+--.+.
T Consensus 9 ~~ILivdd~~~~~~---~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlil-lD~~lp~----~~g~~l~ 80 (149)
T 1i3c_A 9 KVILLVEDSKADSR---LVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLIL-LDLNLPK----KDGREVL 80 (149)
T ss_dssp EEEEEECCCHHHHH---HHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEE-ECSCCSS----SCHHHHH
T ss_pred CeEEEEECCHHHHH---HHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEE-EeCCCCC----CcHHHHH
Confidence 45555445443333 4556677788833322233321 222221 1 13467644 4443321 3333444
Q ss_pred HHHHCC-----CcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 103 DFVDSG-----HDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 103 ~Fvd~G-----GNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
+.+.+. --++++++....+.+...+ +.|.
T Consensus 81 ~~l~~~~~~~~~piiils~~~~~~~~~~~~-~~ga 114 (149)
T 1i3c_A 81 AEIKQNPDLKRIPVVVLTTSHNEDDVIASY-ELHV 114 (149)
T ss_dssp HHHHHCTTTTTSCEEEEESCCCHHHHHHHH-HTTC
T ss_pred HHHHhCcCcCCCeEEEEECCCChHHHHHHH-HcCC
Confidence 444432 2466666655544444333 4553
No 142
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.94 E-value=4e+02 Score=23.32 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=59.2
Q ss_pred CeEEEEEcCcccc---cchhHHHHHHHhCCceEEEecCCCCCcccc---------------cccccccCEEEEeCCCCCc
Q 013791 30 RRVLVLVDDFAIK---SSHSLYFGSLTSRGFQLEFKLADDPNIGLQ---------------RYGQYLYDALVLFCPSVER 91 (436)
Q Consensus 30 ~r~LVl~d~~~~~---~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~---------------~~ge~~yd~LII~~p~~~~ 91 (436)
++++|+.-+.... ....++...+-..|.+++.....| +.++ ..-....|.+||..|.-.
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~d--LP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn- 79 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGD--LPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYN- 79 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGG--SCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBT-
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEeccc--CCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhc-
Confidence 3566666543221 122345556666788888754332 2221 112334699999999554
Q ss_pred CCCCCCH--HHHHHHHHC--------CCcEEEE-eCCCC------cHHHHHHHHHcCceecCC
Q 013791 92 FGGSIDV--ASIVDFVDS--------GHDLIVA-ADSNA------SDLIREVATECGVDFDED 137 (436)
Q Consensus 92 ~~~~l~~--~~L~~Fvd~--------GGNiLi~-~~~~~------~~~lr~ll~ElGI~~~~~ 137 (436)
++++. +...|++.. |.-++++ .+++. ...+|.++..+|..+-+.
T Consensus 80 --~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a~~~Lr~vl~~lg~~v~~~ 140 (190)
T 3u7r_A 80 --RSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALAQARLKNDLLHVGTVMMSM 140 (190)
T ss_dssp --TBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHHHHHHHHHHHTTTCEECCC
T ss_pred --ccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHHHHHHHHHHHHcCCEEccC
Confidence 44544 666666632 3334443 33332 467999999999988875
No 143
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.93 E-value=1.3e+02 Score=23.53 Aligned_cols=94 Identities=7% Similarity=-0.029 Sum_probs=43.8
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~-- 107 (436)
.|+||+=|+...+. .+...|++.||++... .+..-.+.......+|.+|+ +..... +..+--.+.+.+.+
T Consensus 7 ~~ilivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-D~~l~~--~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 7 PIIYLVDHQKDARA---ALSKLLSPLDVTIQCF--ASAESFMRQQISDDAIGMII-EAHLED--KKDSGIELLETLVKRG 78 (136)
T ss_dssp CEEEEECSCHHHHH---HHHHHHTTSSSEEEEE--SSHHHHTTSCCCTTEEEEEE-ETTGGG--BTTHHHHHHHHHHHTT
T ss_pred CeEEEEcCCHHHHH---HHHHHHHHCCcEEEEe--CCHHHHHHHHhccCCCEEEE-eCcCCC--CCccHHHHHHHHHhCC
Confidence 45666555544333 4556677789998743 22211222233344676544 443221 00233333333332
Q ss_pred -CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 108 -GHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 108 -GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
.-.++++++....+.... +-+.|+
T Consensus 79 ~~~~ii~~s~~~~~~~~~~-~~~~ga 103 (136)
T 3kto_A 79 FHLPTIVMASSSDIPTAVR-AMRASA 103 (136)
T ss_dssp CCCCEEEEESSCCHHHHHH-HHHTTC
T ss_pred CCCCEEEEEcCCCHHHHHH-HHHcCh
Confidence 335666666555443333 334553
No 144
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=21.47 E-value=2.3e+02 Score=25.71 Aligned_cols=94 Identities=10% Similarity=0.086 Sum_probs=52.9
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCC-C-----CHHHHH
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS-I-----DVASIV 102 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~-l-----~~~~L~ 102 (436)
.-|+||+-.... .....+.+.|+..|.++.....++. .........+|.|||-+.....++.. . ..+.|+
T Consensus 12 ~~~~~~i~~~~~--~~~~~i~~~l~~~G~~v~v~~~~~~--~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~ 87 (239)
T 1o1y_A 12 HVRVLAIRHVEI--EDLGMMEDIFREKNWSFDYLDTPKG--EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIE 87 (239)
T ss_dssp CCEEEEECSSTT--SSCTHHHHHHHHTTCEEEEECGGGT--CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHH
T ss_pred eeEEEEEECCCC--CCchHHHHHHHhCCCcEEEeCCcCc--cccccchhcCCEEEECCCCccccCCccChhHHHHHHHHH
Confidence 457888865443 3334688888999999985433321 11111223569988876443333221 1 235666
Q ss_pred HHHHCCCcEE-EEeCCCCcHHHHHHHHHcCc
Q 013791 103 DFVDSGHDLI-VAADSNASDLIREVATECGV 132 (436)
Q Consensus 103 ~Fvd~GGNiL-i~~~~~~~~~lr~ll~ElGI 132 (436)
+++++|--+| |- -...-++..+|-
T Consensus 88 ~~~~~~~PiLGIC------~G~QlL~~alGG 112 (239)
T 1o1y_A 88 EILKKEIPFLGIC------LGSQMLAKVLGA 112 (239)
T ss_dssp HHHHHTCCEEEET------HHHHHHHHHTTC
T ss_pred HHHHCCCCEEEEc------hhHHHHHHHcCC
Confidence 7777776666 32 245556666653
No 145
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=21.47 E-value=1.2e+02 Score=29.73 Aligned_cols=62 Identities=18% Similarity=0.404 Sum_probs=45.5
Q ss_pred eEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce---Eeeccc--cCCCceEEEEEecCCceeeeEEEEeeee
Q 013791 310 YRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY---VLKTLS--TDQKGHYSAEFKVPDVYGVFQFKVEYQR 382 (436)
Q Consensus 310 Y~i~d~v~y~i~i~e~~~~~W~P~~~ddiQlEf~mldP~---~R~~L~--~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 382 (436)
=+++...+|+|+-.+ |..=+|+....+|- ....++ ..++|+|.++| .|..-|.|+..|.|..
T Consensus 269 ~~vg~p~~F~Vdt~~----------AG~g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y-~P~~~G~~~I~V~~~g 335 (347)
T 4b7l_A 269 NMVKQPAKFTVDTIS----------AGQGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEY-LPKVTGLHKVTVLFAG 335 (347)
T ss_dssp CCTTSCEEEEEECTT----------TCSCCEEEEEECTTSCEEECEEEESSTTCSEEEEEE-CCCSSSEEEEEEEETT
T ss_pred ceeCCEEEEEEEeCC----------CCCCceEEEEECCCCCeecCEEEEEcCCCCEEEEEE-EECCCEeEEEEEEECC
Confidence 467888888887653 33446777888883 333333 45689999999 6899999999999864
No 146
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=21.23 E-value=2.5e+02 Score=26.83 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=53.9
Q ss_pred ccchhHHHHHHH-hCCceEEEecCCCCCcc-cccc--cccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC----------
Q 013791 42 KSSHSLYFGSLT-SRGFQLEFKLADDPNIG-LQRY--GQYLYDALVLFCPSVERFGGSIDVASIVDFVDS---------- 107 (436)
Q Consensus 42 ~~~~S~f~~~L~-~rGf~v~~~~~~d~~~~-L~~~--ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~---------- 107 (436)
...+..|.+.|+ +.|.+|....|.+...+ ++.. .--..+.+|+..+... ....+...+..++++
T Consensus 67 ~~q~~~l~~~Lr~~~Gv~V~~l~~~~~~Pd~vF~rD~~~vi~~~vii~~m~~~--~Rr~E~~~~~~~l~~~g~~i~~~~~ 144 (308)
T 3i4a_A 67 ERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP--SRRKEVDMMKEALEKLQLNIVEMKD 144 (308)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECCCTTCTTTTCGGGGEEEETTEEEECCCSSG--GGGGGHHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCCCCCCeEeecCeEEEECCEEEEeCCCch--hhhhhHHHHHHHHHHCCCeEEEccC
Confidence 468889999999 99999988766554333 3322 2223467777666432 123455555555543
Q ss_pred ------CCcEEEEeC-------C-CCcHHHHHHHHHc
Q 013791 108 ------GHDLIVAAD-------S-NASDLIREVATEC 130 (436)
Q Consensus 108 ------GGNiLi~~~-------~-~~~~~lr~ll~El 130 (436)
||++|+... . +....++.|++.+
T Consensus 145 ~~~~lEGGDvl~~g~~v~vG~s~RTn~~gi~~l~~~l 181 (308)
T 3i4a_A 145 ENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTF 181 (308)
T ss_dssp TTCCCCGGGEEECSSCEEEEESSSCCHHHHHHHHHHT
T ss_pred CCCcCccceEEEECCEEEEEEchhcCHHHHHHHHHHc
Confidence 578775542 1 2356888888877
No 147
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=21.08 E-value=2e+02 Score=25.25 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=35.3
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhC------CceEEEecCCCCCc-----------ccccccccccCEEEEeCCC
Q 013791 29 DRRVLVLVDDFAIKSSHSLYFGSLTSR------GFQLEFKLADDPNI-----------GLQRYGQYLYDALVLFCPS 88 (436)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~f~~~L~~r------Gf~v~~~~~~d~~~-----------~L~~~ge~~yd~LII~~p~ 88 (436)
..|+.|++-+.-...+.....+-|+.. +|++++..++...+ .+..-....||.|||-+..
T Consensus 5 ~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~ 81 (202)
T 3gra_A 5 PYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGL 81 (202)
T ss_dssp CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCT
T ss_pred cEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCC
Confidence 467878775544455555555566543 49999876664321 1112124678998886553
No 148
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.93 E-value=3e+02 Score=21.74 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=42.3
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCC--ceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-
Q 013791 31 RVLVLVDDFAIKSSHSLYFGSLTSRG--FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS- 107 (436)
Q Consensus 31 r~LVl~d~~~~~~~~S~f~~~L~~rG--f~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~- 107 (436)
|+||+=|+...+ ..+...|+..| +.+... .+..-.+.......+|.+|+ +.... ..+--.+.+.+.+
T Consensus 22 ~iLivdd~~~~~---~~l~~~L~~~~~~~~v~~~--~~~~~al~~l~~~~~dlii~-D~~l~----~~~g~~~~~~l~~~ 91 (150)
T 4e7p_A 22 KVLVAEDQSMLR---DAMCQLLTLQPDVESVLQA--KNGQEAIQLLEKESVDIAIL-DVEMP----VKTGLEVLEWIRSE 91 (150)
T ss_dssp EEEEECSCHHHH---HHHHHHHHTSTTEEEEEEE--SSHHHHHHHHTTSCCSEEEE-CSSCS----SSCHHHHHHHHHHT
T ss_pred EEEEEcCCHHHH---HHHHHHHHhCCCcEEEEEE--CCHHHHHHHhhccCCCEEEE-eCCCC----CCcHHHHHHHHHHh
Confidence 455544544333 34566677777 555543 22221233333344676554 44322 1344444444443
Q ss_pred --CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 108 --GHDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 108 --GGNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
.-.++++++....+.... +-+.|+
T Consensus 92 ~~~~~ii~ls~~~~~~~~~~-~~~~g~ 117 (150)
T 4e7p_A 92 KLETKVVVVTTFKRAGYFER-AVKAGV 117 (150)
T ss_dssp TCSCEEEEEESCCCHHHHHH-HHHTTC
T ss_pred CCCCeEEEEeCCCCHHHHHH-HHHCCC
Confidence 334666666555444433 345553
No 149
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=20.71 E-value=2e+02 Score=24.39 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=48.1
Q ss_pred eEEEEEcCccc--ccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCC--HHHHHHHHH
Q 013791 31 RVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSID--VASIVDFVD 106 (436)
Q Consensus 31 r~LVl~d~~~~--~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~--~~~L~~Fvd 106 (436)
|++|+|-+..- +.-=....+.|... .++....++... .....||.|||..|.-- . +.+. .+.+.+++.
T Consensus 2 ki~IvY~S~tGnT~~iA~~Ia~~l~~~--~v~i~~~~~~~~----~~l~~~d~ii~g~pt~~-~-G~~p~~~~~f~~~l~ 73 (175)
T 1ag9_A 2 ITGIFFGSDTGNTENIAKMIQKQLGKD--VADVHDIAKSSK----EDLEAYDILLLGIPTWY-Y-GEAQCDWDDFFPTLE 73 (175)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEEGGGCCH----HHHHTCSEEEEECCEET-T-TEECHHHHHHHHHHT
T ss_pred EEEEEEECCCchHHHHHHHHHHHhccC--ceEEEEcccCCh----hHhhhCCEEEEEEeecC-C-CcChHHHHHHHhhhh
Confidence 68899876521 22222344445443 344333232211 12335799999988632 1 2222 233444443
Q ss_pred ----CCCcEEEEeC-CC--C-------cHHHHHHHHHcCceecC
Q 013791 107 ----SGHDLIVAAD-SN--A-------SDLIREVATECGVDFDE 136 (436)
Q Consensus 107 ----~GGNiLi~~~-~~--~-------~~~lr~ll~ElGI~~~~ 136 (436)
+|..+.+.+. .. - ...++..+.+.|..+-.
T Consensus 74 ~~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~ 117 (175)
T 1ag9_A 74 EIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVG 117 (175)
T ss_dssp TCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECC
T ss_pred hcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEE
Confidence 2444554432 11 1 24566777777877765
No 150
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.46 E-value=1.7e+02 Score=22.32 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=44.0
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC-
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG- 108 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l~~~~L~~Fvd~G- 108 (436)
.|+||+=|+...+. .+...|+..||++... .+..-.+.......+|.+|+ +..-. ..+--.+.+.+.+.
T Consensus 3 ~~ilivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~al~~~~~~~~dlii~-D~~~p----~~~g~~~~~~lr~~~ 72 (120)
T 3f6p_A 3 KKILVVDDEKPIAD---ILEFNLRKEGYEVHCA--HDGNEAVEMVEELQPDLILL-DIMLP----NKDGVEVCREVRKKY 72 (120)
T ss_dssp CEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SSHHHHHHHHHTTCCSEEEE-ETTST----TTHHHHHHHHHHTTC
T ss_pred CeEEEEECCHHHHH---HHHHHHHhCCEEEEEe--CCHHHHHHHHhhCCCCEEEE-eCCCC----CCCHHHHHHHHHhcC
Confidence 46666656554443 4556677889998753 22221233223345676555 43322 12333444444443
Q ss_pred -CcEEEEeCCCCcHHHHHHHHHcCc
Q 013791 109 -HDLIVAADSNASDLIREVATECGV 132 (436)
Q Consensus 109 -GNiLi~~~~~~~~~lr~ll~ElGI 132 (436)
--++++++....... .-+-+.|.
T Consensus 73 ~~~ii~~t~~~~~~~~-~~~~~~ga 96 (120)
T 3f6p_A 73 DMPIIMLTAKDSEIDK-VIGLEIGA 96 (120)
T ss_dssp CSCEEEEEESSCHHHH-HHHHHTTC
T ss_pred CCCEEEEECCCChHHH-HHHHhCCc
Confidence 345555554443322 23345553
No 151
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=20.35 E-value=1.6e+02 Score=31.91 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=57.6
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEecCCCCCc------c------cccccccccCEEEEeCCC--CCcCC
Q 013791 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------G------LQRYGQYLYDALVLFCPS--VERFG 93 (436)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~f~~~L~~rGf~v~~~~~~d~~~------~------L~~~ge~~yd~LII~~p~--~~~~~ 93 (436)
.+.|++||+-+...........+.|+..||++++..++...+ . +..-....||.|||-... .+.+.
T Consensus 533 ~~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~ 612 (715)
T 1sy7_A 533 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLS 612 (715)
T ss_dssp TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHH
T ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhc
Confidence 457899998766666777889999999999999877654211 1 112223468988886541 12121
Q ss_pred CCCC-HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHc-Cc
Q 013791 94 GSID-VASIVDFVDSGHDLIVAADSNASDLIREVATEC-GV 132 (436)
Q Consensus 94 ~~l~-~~~L~~Fvd~GGNiLi~~~~~~~~~lr~ll~El-GI 132 (436)
.+-. .+-|.++.++|. .+.+...+. .+|.+. |+
T Consensus 613 ~~~~l~~~Lr~~~~~gK-~IaAIC~G~-----~lLA~AlGL 647 (715)
T 1sy7_A 613 KNGRALHWIREAFGHLK-AIGATGEAV-----DLVAKAIAL 647 (715)
T ss_dssp TCHHHHHHHHHHHHTTC-EEEEETTHH-----HHHHHHHCC
T ss_pred cCHHHHHHHHHHHhCCC-EEEEECHHH-----HHHHHccCc
Confidence 1111 145666666666 443333221 345555 77
No 152
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=20.26 E-value=1.4e+02 Score=25.58 Aligned_cols=101 Identities=9% Similarity=0.047 Sum_probs=49.9
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhC---CceEEEecCCCCCcccccccccccCEEEEeCCCCC--cCCCC------CCH
Q 013791 30 RRVLVLVDDFAIKSSHSLYFGSLTSR---GFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE--RFGGS------IDV 98 (436)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~f~~~L~~r---Gf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~--~~~~~------l~~ 98 (436)
+|+||+|-+.. .+-..+.+.+.+. +++++....++.+. .....||.|||..|.-. .+++- -..
T Consensus 1 ~kilI~Y~S~t--GnT~~iA~~ia~~l~~~~~v~~~~~~~~~~----~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~ 74 (179)
T 1yob_A 1 AKIGLFFGSNT--GKTRKVAKSIKKRFDDETMSDALNVNRVSA----EDFAQYQFLILGTPTLGEGELPGLSSDAENESW 74 (179)
T ss_dssp CCEEEEECCSS--SHHHHHHHHHHTTSCTTTBCCCEEGGGCCH----HHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCH
T ss_pred CeEEEEEECCC--cHHHHHHHHHHHHhCCCCceEEEEhhhCCH----HHHhcCCEEEEEeccCCCCcCCcccccccchHH
Confidence 47899997752 2222344444432 44444333332211 12235799999998743 22200 123
Q ss_pred HHHHHHHHC----CCcEEEEeC--CC-----C---cHHHHHHHHHcCceecC
Q 013791 99 ASIVDFVDS----GHDLIVAAD--SN-----A---SDLIREVATECGVDFDE 136 (436)
Q Consensus 99 ~~L~~Fvd~----GGNiLi~~~--~~-----~---~~~lr~ll~ElGI~~~~ 136 (436)
+.+.+.++. |-.+.+.+. .. . ...+..++.++|..+..
T Consensus 75 ~~fl~~l~~~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~ 126 (179)
T 1yob_A 75 EEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVG 126 (179)
T ss_dssp HHHHHHHTTCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEEC
T ss_pred HHHHHHhhhcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEE
Confidence 444444432 334444432 11 1 25667777778877665
No 153
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=20.21 E-value=55 Score=32.13 Aligned_cols=81 Identities=9% Similarity=0.094 Sum_probs=46.7
Q ss_pred HHhCCceEE------EecCCCCCcccccccccccCEEEEeCCCCCc---CCCC---C---CH---HHHHHHHHCCCcEEE
Q 013791 52 LTSRGFQLE------FKLADDPNIGLQRYGQYLYDALVLFCPSVER---FGGS---I---DV---ASIVDFVDSGHDLIV 113 (436)
Q Consensus 52 L~~rGf~v~------~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~---~~~~---l---~~---~~L~~Fvd~GGNiLi 113 (436)
+++.|.++. ...+++..+.+....+..||.|||+...... +.+. . +. ..+.+.+..|.+++|
T Consensus 72 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~~~~~vvV 151 (385)
T 3klj_A 72 YEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFI 151 (385)
T ss_dssp HHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHHHHSCEEE
T ss_pred HHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhhcCCeEEE
Confidence 445555543 2344444444544446678999998654322 1110 0 12 456677777999998
Q ss_pred EeCCCCcHHHHHHHHHcCc
Q 013791 114 AADSNASDLIREVATECGV 132 (436)
Q Consensus 114 ~~~~~~~~~lr~ll~ElGI 132 (436)
.++....-.+-..+.+.|.
T Consensus 152 IGgG~~g~E~A~~l~~~g~ 170 (385)
T 3klj_A 152 IGGGILGIELAQAIIDSGT 170 (385)
T ss_dssp ECCSHHHHHHHHHHHHHTC
T ss_pred ECCCHHHHHHHHHHHhCCC
Confidence 8766555445556666664
Done!