Query 013792
Match_columns 436
No_of_seqs 224 out of 693
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:26:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00777 Glyco_transf_29: Glyc 100.0 2.6E-48 5.7E-53 377.3 11.1 193 151-346 34-266 (266)
2 KOG2692 Sialyltransferase [Car 100.0 9.1E-43 2E-47 355.5 13.0 260 90-349 40-375 (376)
3 PF06002 CST-I: Alpha-2,3-sial 95.6 0.15 3.3E-06 51.6 11.9 167 172-344 2-211 (291)
4 PF01973 MAF_flag10: Protein o 52.4 31 0.00068 31.4 5.4 129 172-302 25-163 (170)
5 KOG4120 G/T mismatch-specific 32.9 34 0.00074 35.9 2.6 34 344-377 206-239 (426)
6 CHL00190 psaM photosystem I su 21.4 88 0.0019 21.9 2.2 15 6-20 9-23 (30)
7 PF06258 Mito_fiss_Elm1: Mitoc 19.5 1.9E+02 0.0041 29.6 5.2 45 328-374 265-310 (311)
8 TIGR03053 PS_I_psaM photosyste 18.4 1.1E+02 0.0024 21.2 2.2 16 6-21 8-23 (29)
9 PRK11878 psaM photosystem I re 18.0 1.1E+02 0.0024 22.0 2.2 17 5-21 11-27 (34)
10 PF07465 PsaM: Photosystem I p 16.9 1.3E+02 0.0029 20.9 2.2 15 6-20 8-22 (29)
No 1
>PF00777 Glyco_transf_29: Glycosyltransferase family 29 (sialyltransferase); InterPro: IPR001675 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 29 (GT29 from CAZY) comprises enzymes with a number of known activities; sialyltransferase (2.4.99 from EC), beta-galactosamide alpha-2,6-sialyltransferase (2.4.99.1 from EC), alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (2.4.99.3 from EC), beta-galactoside alpha-2,3-sialyltransferase (2.4.99.4 from EC), N-acetyllactosaminide alpha-2,3-sialyltransferase (2.4.99.6 from EC), alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase (2.4.99.8 from EC); lactosylceramide alpha-2,3-sialyltransferase (2.4.99.9 from EC). These enzymes use a nucleotide monophosphosugar as the donor (CMP-NeuA) instead of a nucleotide diphosphosugar. Sialyltransferase may be responsible for the synthesis of the sequence NEUAC-Alpha-2,3-GAL-Beta-1,3-GALNAC-, found on sugar chains O-linked to thr or ser and also as a terminal sequenec on certain gagnliosides. These enzymes catalyse sialyltransfer reactions during glycosylation, and are type II membrane proteins.; GO: 0008373 sialyltransferase activity, 0006486 protein glycosylation, 0030173 integral to Golgi membrane; PDB: 2WNF_A 2WML_A 2WNB_A.
Probab=100.00 E-value=2.6e-48 Score=377.28 Aligned_cols=193 Identities=31% Similarity=0.443 Sum_probs=114.0
Q ss_pred HHHHHhhhcCCCCCCCCCCC----ccceEEEcCCcCCCCCCCCCcccccceeeeecCCcccCccccCCccceEEEecccc
Q 013792 151 LCMEKLSLVLPETPPYSPRQ----FGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGS 226 (436)
Q Consensus 151 ~~~e~L~~~lP~~~p~~~~~----~~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~gfe~DVG~KTt~~~~np~s 226 (436)
.+.+.|..++|..+|+...+ |+|||||||||||++|+||+|||+||||||||+||++|||+|||+|||++++||++
T Consensus 34 ~i~~~l~~l~~~~~p~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~aP~~gfe~DVG~kT~~~~~n~~~ 113 (266)
T PF00777_consen 34 KISKELYKLLPESSPFSLKHFKRRCRTCAVVGNSGILLGSGCGKEIDSHDFVIRMNLAPVKGFEKDVGSKTTLRTMNPSS 113 (266)
T ss_dssp -HHHHHHHHTTT-S-S---TTTTG--EEEEE--BGGGTT---HHHHHTSSEEEEETT---TT-HHHH-S--SEEEEBTTB
T ss_pred hHHHHHHHhCcccCccccccccCCCCeEEEEcCChHhccCccccccccCeeEEecCCccccccccccCccccccccChhH
Confidence 45678899999888876555 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccceeEEEEcchhHH--H---------------------HHhhhccccccchHHHHhhhccC------C
Q 013792 227 AKALDKVVELDETRKEVLIVKTTIHD--I---------------------MSKMIQEIPIKNPVYLMLGAAFG------S 277 (436)
Q Consensus 227 ~~~l~~~~~l~~~~~~vl~vk~t~~d--~---------------------~~~~~~~v~i~nP~fl~~~~~f~------~ 277 (436)
+...-+. .++. .....+.....+ + ......++.+.||.+++....+| .
T Consensus 114 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (266)
T PF00777_consen 114 LQRRYNL--LDKD-TFLVLLPFKGSDLVWLPAFSSKKNTRKSFWAYKALEKKYPNQKVRILHPEFLRYIWRFWLRRGGRG 190 (266)
T ss_dssp -----------TT--EEEE--SSHHHHHHHHHHTTT-----BSSSB--S-----GGGEEEB-HHHHHHHHHHTSTT---S
T ss_pred hhhhccc--cccc-cceeccccccchhhhhhhhhccccccccccchhhhhhccCcceeeecCHHHHhhHHHHhhhhhccc
Confidence 8431011 1111 111111110000 0 01123467899999998776542 4
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeccccCCCCCcccccccCCCC-------CCCcchhHHHHHHHHhcCcEEEEcCC
Q 013792 278 AAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRK-------GHTPLHGRAYYHMMECLGLVKIHSPM 346 (436)
Q Consensus 278 ~~pSTGll~v~lAL~lCDeVslYGF~pd~~y~~~~HYYd~~~~-------~h~~~He~~~~q~LH~~GVIrLh~g~ 346 (436)
.+||||++++++||++||||+||||||..+...++||||+... .|+...|+.+|++||++|||++|+|+
T Consensus 191 ~~pSTG~~~~~~Al~~CD~V~lYGF~p~~~~~~~~HYyd~~~~~~~~~~~~H~~~~E~~~~~~L~~~Gvi~l~~g~ 266 (266)
T PF00777_consen 191 NRPSTGLMAVSLALHFCDEVHLYGFWPPDNRTVPYHYYDNVKPKPCFFYKNHDMPAEFRLLKRLHKQGVIKLHTGK 266 (266)
T ss_dssp SS--HHHHHHHHHHHH-SEEEEES-S---TTS---BTTB------------S-HHHHHHHHHHHHHTTSSEEE---
T ss_pred cCCCccHHHHHHHhcCCCeEEEEEEEecCCCCCccccccCccccccCCCCCCCCHHHHHHHHHHHHCCCeEEecCC
Confidence 6899999999999999999999999995556678999998531 25555688899999999999999985
No 2
>KOG2692 consensus Sialyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.1e-43 Score=355.45 Aligned_cols=260 Identities=28% Similarity=0.455 Sum_probs=174.3
Q ss_pred CcccccccchhhHHHHHHhhhccccccchHHHhhhCCCC---cccchhhhhcccccccccC-------------------
Q 013792 90 ELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNG---WEEYAWRRINKGVLLNRCQ------------------- 147 (436)
Q Consensus 90 ~~~~~~~~f~~~~~vl~W~~~~~~~~~~t~e~~~~lp~g---~~~~~w~~i~~~l~L~~~~------------------- 147 (436)
.+.++...+.+++.+..|+...+-....+.++++.++.+ |++..+..+....+...+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (376)
T KOG2692|consen 40 LLPGLSNGLLVAAQRLPKEVVKRLSVVLRNELLQRLASGRSLWKDNSFLAREQRQLQLRCKDALKNFSRSKPSLPLGDSM 119 (376)
T ss_pred hhhccCCceeeeeeecccccccceeeehHhhhhhhccccCccccccchhHHHHHHHHHhccchhhcceeccccccchhhh
Confidence 334444446666667777776665566688888888888 8777774321000000000
Q ss_pred -------ch-hHHHHHhhhcCCCCCCCC---CCCccceEEEcCCcCCCCCCCCCcccccceeeeecCCcccCccccCCcc
Q 013792 148 -------NK-TLCMEKLSLVLPETPPYS---PRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKK 216 (436)
Q Consensus 148 -------n~-~~~~e~L~~~lP~~~p~~---~~~~~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~gfe~DVG~K 216 (436)
.. ......++..+|..+|+. ...|++||||||||+|++|+||+|||+||+|||||+|||+|||+|||+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~c~~CAVVGNsG~L~~S~~G~eID~~D~ViR~N~APt~gye~DVGsK 199 (376)
T KOG2692|consen 120 LYSRSRWRRLEVIDPPLFLLLPGVSPLFPLLFKRCRRCAVVGNSGILLNSRLGREIDSHDFVIRLNLAPTKGYEKDVGSK 199 (376)
T ss_pred eecccccccccccCcchhhhccccCCCcccccccCceEEEECCcceeCCCccccccccccEEEECCCCCccchhcccccc
Confidence 00 011112466777776642 2338999999999999999999999999999999999999999999999
Q ss_pred ceEEEecccchhhhhhhccccccceeEEEEcchhHH--H--H----H----------------hhhccccccchHHHHhh
Q 013792 217 STFRLLNRGSAKALDKVVELDETRKEVLIVKTTIHD--I--M----S----------------KMIQEIPIKNPVYLMLG 272 (436)
Q Consensus 217 Tt~~~~np~s~~~l~~~~~l~~~~~~vl~vk~t~~d--~--~----~----------------~~~~~v~i~nP~fl~~~ 272 (436)
||++++||+++................++++.+..+ . + . .-..++.+.||.|+.+.
T Consensus 200 Tt~r~~n~~Sv~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 279 (376)
T KOG2692|consen 200 TTLRTVNPPSVPTLLRNYLLDEPKRVTFVVWLPFKNMSLLWLPAFYNTVNLRTGYWPVPRLYPVKPDKILLLDPLFILYT 279 (376)
T ss_pred eeEEEEcchhhhhccccccccccccceEEEEcCccchhhhhhhhhccccccccceeecceeccCCcCeEeecChHHHHHH
Confidence 999999999887644322211111134444332211 0 0 0 01135778899888764
Q ss_pred h-ccC------CCCCChHHHHHHHHHhcCCeEEEeccccCCCCCc----ccccccCCCCC--CCcch----hHHHHHHHH
Q 013792 273 A-AFG------SAAKGTGLKALEFALSICDSVDMYGFTVDPGYKE----WTRYFSESRKG--HTPLH----GRAYYHMME 335 (436)
Q Consensus 273 ~-~f~------~~~pSTGll~v~lAL~lCDeVslYGF~pd~~y~~----~~HYYd~~~~~--h~~~H----e~~~~q~LH 335 (436)
. .|+ ..+||||++++++|||+|||||+|||||++.... .+||||+.... ....| |...+++||
T Consensus 280 ~~~~~~s~~~~~~~pSTG~l~~~lAl~lCdeV~lyGF~~~~~~~~~~~~~~hYyd~~~~~~~~~~~H~~~~e~~~~~~l~ 359 (376)
T KOG2692|consen 280 VDRYLKSHGVQPKRPSTGLLAVTLALHLCDEVHLYGFGPDNRCRNSHYVPYHYYDNAKPDELFYGLHDMPLEGEALRKLH 359 (376)
T ss_pred HHHHhhCCCCCCCCCChhHHHHHHHHhhcCeEEEEEecCCCCCccCCCCccccccccccchhhhhhhhchhHHHHHHHHH
Confidence 3 221 3689999999999999999999999999873221 35888887542 34455 455799999
Q ss_pred hcC--cEEEEcCCCCC
Q 013792 336 CLG--LVKIHSPMRAN 349 (436)
Q Consensus 336 ~~G--VIrLh~g~~~~ 349 (436)
+.| ..++..+.|..
T Consensus 360 ~~g~~~~~~~~~~c~~ 375 (376)
T KOG2692|consen 360 EKGVIILLLRLGPCEF 375 (376)
T ss_pred hccccccccccCCCCC
Confidence 999 55566677753
No 3
>PF06002 CST-I: Alpha-2,3-sialyltransferase (CST-I); InterPro: IPR009251 This entry represents several alpha-2,3-sialyltransferase (2.4.99 from EC) proteins, most of which are found in the food-borne pathogen Campylobacter jejuni. Sialyltransferases transfer a sialic acid moiety from cytidine-5'-monophospho-N-acetyl-neuraminic acid (CMP-NeuAc) to terminal positions of various key glycoconjugates, which play critical roles in cell recognition and adherence []. The structure of Cst-II alpha-2,3-sialyltransferase from C. jejuni consists of a 3-layer alpha/beta/alpha topology. Cst-II catalytic mechanism involves an essential histidine (general base) and two tyrosine residues (coordination of the phosphate leaving group) to carry out substrate binding and glycosyl transfer. ; PDB: 2X63_A 2X61_B 1RO7_B 2WQQ_A 2X62_B 1RO8_A 2DRJ_A 2P56_A 2P2V_A.
Probab=95.61 E-value=0.15 Score=51.64 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=81.6
Q ss_pred cceEEEcCCcCCCCCCCCCcccccceeeeecCCcccC-ccccCCccceEEEecccchhh-h---hhhccccccc-eeEEE
Q 013792 172 GRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQN-YTDYVGKKSTFRLLNRGSAKA-L---DKVVELDETR-KEVLI 245 (436)
Q Consensus 172 ~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~g-fe~DVG~KTt~~~~np~s~~~-l---~~~~~l~~~~-~~vl~ 245 (436)
++|.|.|||-.|..-..|. +-.-+.|||||.--.+. | -.|.+..-+++||..... . .....-++.. +.++.
T Consensus 2 k~~~i~gngps~~~~~~~~-~~~~~~~fr~n~fy~e~~~--~lg~~~~~VFFn~~vf~~Qy~T~~~Li~n~EY~~e~i~c 78 (291)
T PF06002_consen 2 KPAIIAGNGPSLKEIDYSL-LPKDFDVFRCNQFYFEDKY--YLGKKVKAVFFNPCVFFEQYYTAKQLIQNGEYEIENIYC 78 (291)
T ss_dssp SEEEEE-SSGGGGC--GGG-S-SSEEEEEETTGGG-SBE--TT-SEECEEEE-GGGHHHHHHHHHHHHHTTS-EECEEEE
T ss_pred CceEEeCCCCchhhcchhh-CCCcccEEEecceecchhh--hcccceeEEEechHHHHHHHHHHHHHHhcCceeeeeeEE
Confidence 5788999999997766665 33445599999875532 3 489999999999986532 0 0111111111 12222
Q ss_pred Ecc--h------hHHHHHhhhccccccc------hHHHH---hhhccCCCCCChHHHHHHHHHhcC-CeEEEeccccCCC
Q 013792 246 VKT--T------IHDIMSKMIQEIPIKN------PVYLM---LGAAFGSAAKGTGLKALEFALSIC-DSVDMYGFTVDPG 307 (436)
Q Consensus 246 vk~--t------~~d~~~~~~~~v~i~n------P~fl~---~~~~f~~~~pSTGll~v~lAL~lC-DeVslYGF~pd~~ 307 (436)
... . ..+.+.+....+...| +.|.. +...+-..+.|||.+|+.+|+.+- .++-+-|. |=
T Consensus 79 s~~~~~~~e~~~f~~~~~~~yp~~~~~y~~l~~l~~f~~~~ky~~~y~~q~~TSGVyM~~vAIAlGYKEIYLaGI--DF- 155 (291)
T PF06002_consen 79 STINFEDFENKYFDDYFDKHYPDARLTYSYLKKLKPFYAHIKYNEIYYNQRITSGVYMCAVAIALGYKEIYLAGI--DF- 155 (291)
T ss_dssp ---S-TTTS-HHHHHHHHHHSTT-EETHHHHTTSHHHHHHHHHHHHHH-----HHHHHHHHHHHCT--EEEEES----T-
T ss_pred eccccccccchhhhhHHHHhCCCchhHHHHHHhcHHHHHHHHHHHhhcCCCcchHHHHHHHHHHcCcceEEEeee--ee-
Confidence 211 0 0111222222222222 22322 222234568899999999999984 67999997 22
Q ss_pred C-CcccccccCCCC--------------CCCcchhH----HHHHHHHhcCcEEEEc
Q 013792 308 Y-KEWTRYFSESRK--------------GHTPLHGR----AYYHMMECLGLVKIHS 344 (436)
Q Consensus 308 y-~~~~HYYd~~~~--------------~h~~~He~----~~~q~LH~~GVIrLh~ 344 (436)
| ..+.|||.+..+ .++..|.. .-.+.|.+.+=++++.
T Consensus 156 Y~~~~~hy~fe~k~~ni~~l~~~~~~~~~~~~~Hsk~~Dlqal~~lqk~y~v~iYa 211 (291)
T PF06002_consen 156 YQNGGGHYAFENKSENIINLLPDFENRKSSDIQHSKDYDLQALEFLQKYYDVKIYA 211 (291)
T ss_dssp T-TTSSSSSS-SSTHHHHHHSGGGGSS--STTT--HHHHHHHHHHHHHHHT-EEEE
T ss_pred ecCCCCcccccccccchhhhCcccccccccccccchhhCHHHHHHHHHhcCeeEEE
Confidence 3 346678544432 23456643 3467788887888884
No 4
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=52.43 E-value=31 Score=31.35 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=64.7
Q ss_pred cceEEEcCCcCCCCC-CCCCcccccceeeeecCCcccCccccCCccceEEEecccchhhhhhhccccccceeEEEEcchh
Q 013792 172 GRCAVIGNSGDLLKT-RFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTTI 250 (436)
Q Consensus 172 ~~CAVVGNsGiL~~S-~~G~eID~hD~ViR~N~ap~~gfe~DVG~KTt~~~~np~s~~~l~~~~~l~~~~~~vl~vk~t~ 250 (436)
++|.|||||=.|... ..=++.-..-++|=+|.+... ..+-|-+.++++...................+-.++.....
T Consensus 25 ~~~~IvgaGPSL~~~i~~lk~~~~~~~iia~~sa~~~--L~~~gI~Pd~~v~~D~~~~~~~~~~~~~~~~~i~l~~~~~~ 102 (170)
T PF01973_consen 25 KPAIIVGAGPSLDKNIELLKENRNKAIIIAVNSALKA--LLKNGIKPDFVVSIDPQFWNYEHFKEINKEFDIPLFFASSA 102 (170)
T ss_pred CeEEEEecCCCHHHHHHHHHhcccCcEEEEecHHHHH--HHHcCceEEEEEEcCCCcchHHHHhhcccccceEEEEeccc
Confidence 689999998888653 111222345566667765331 24567777777764442221111111111112233333322
Q ss_pred -HHHHHhhhccccc-cch--H-HHHhhhcc---CCCCCChHHHHHHHHHhc-CCeEEEecc
Q 013792 251 -HDIMSKMIQEIPI-KNP--V-YLMLGAAF---GSAAKGTGLKALEFALSI-CDSVDMYGF 302 (436)
Q Consensus 251 -~d~~~~~~~~v~i-~nP--~-fl~~~~~f---~~~~pSTGll~v~lAL~l-CDeVslYGF 302 (436)
...++.......+ ..+ . +-+....+ -...+|.+..++.+|+++ |++|-+.|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sV~~~a~~lA~~lG~~~I~L~G~ 163 (170)
T PF01973_consen 103 NPNILRKFKGPKIFFFSNSYQYFAWFSKDFGYILYSGGSVANTALQLAYYLGFKPIYLIGQ 163 (170)
T ss_pred CHHHHHHcCCceEEEecCCccchhhhhccccccCCCCccHHHHHHHHHHHHCCCcEEEEee
Confidence 2222222221111 111 1 11111111 124568999999999988 999999998
No 5
>KOG4120 consensus G/T mismatch-specific thymine DNA glycosylase [Replication, recombination and repair]
Probab=32.87 E-value=34 Score=35.92 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=30.2
Q ss_pred cCCCCCCCCcccccCCHHHHHHHHHHHHHHhccc
Q 013792 344 SPMRANPNRVVKWVPSRDKIRAARAASEKLLGMV 377 (436)
Q Consensus 344 ~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 377 (436)
+.||+-+...-.+.-+.+|-.-||.+.+||+|-+
T Consensus 206 TNmvaR~t~gsaDL~~kE~~eG~RIL~eKlqryr 239 (426)
T KOG4120|consen 206 TNMVARPTSGSADLRKKEMQEGARILYEKLQRYR 239 (426)
T ss_pred hheeccCCCCcccccHHHHhcchHHHHHHHHhhC
Confidence 4589999888899999999999999999999754
No 6
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=21.38 E-value=88 Score=21.92 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=12.6
Q ss_pred HHHHHHHHhhHHHHH
Q 013792 6 FAFLLALASGFAAIL 20 (436)
Q Consensus 6 ~~ll~A~~SGi~~i~ 20 (436)
.+|++|+..||+|+=
T Consensus 9 iAL~~Al~~~iLA~r 23 (30)
T CHL00190 9 IALFLALTTGILAIR 23 (30)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999999953
No 7
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=19.53 E-value=1.9e+02 Score=29.62 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCcEEEEcCCCCCCCCccc-ccCCHHHHHHHHHHHHHHh
Q 013792 328 RAYYHMMECLGLVKIHSPMRANPNRVVK-WVPSRDKIRAARAASEKLL 374 (436)
Q Consensus 328 ~~~~q~LH~~GVIrLh~g~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~ 374 (436)
..+.+.|++.|+++...+.+.-.. |. ..|=.|+.+.|.+.-+++.
T Consensus 265 ~r~~~~L~~~g~~r~~~~~~~~~~--~~~~~pl~et~r~A~~i~~r~~ 310 (311)
T PF06258_consen 265 RRFHQSLEERGAVRPFTGWRDLEQ--WTPYEPLDETDRVAAEIRERLA 310 (311)
T ss_pred HHHHHHHHHCCCEEECCCcccccc--cccCCCccHHHHHHHHHHHHhh
Confidence 458999999999999999977644 55 7788888877777776653
No 8
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=18.37 E-value=1.1e+02 Score=21.18 Aligned_cols=16 Identities=31% Similarity=0.602 Sum_probs=13.0
Q ss_pred HHHHHHHHhhHHHHHH
Q 013792 6 FAFLLALASGFAAILI 21 (436)
Q Consensus 6 ~~ll~A~~SGi~~i~~ 21 (436)
.+|++|+..||+|+=+
T Consensus 8 iaL~~Al~~~iLA~rL 23 (29)
T TIGR03053 8 IALVIALIAGILALRL 23 (29)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999999543
No 9
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=18.02 E-value=1.1e+02 Score=21.97 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhHHHHHH
Q 013792 5 QFAFLLALASGFAAILI 21 (436)
Q Consensus 5 ~~~ll~A~~SGi~~i~~ 21 (436)
-++|++|+..||+|+=+
T Consensus 11 ~iaL~~Al~~giLA~RL 27 (34)
T PRK11878 11 FVALVVALHAGVLALRL 27 (34)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36789999999999543
No 10
>PF07465 PsaM: Photosystem I protein M (PsaM); InterPro: IPR010010 Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction centre. PsaM forms part of the photosystem I complex and its binding is stabilised by PsaI []. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0030094 plasma membrane-derived photosystem I; PDB: 3PCQ_M 1JB0_M.
Probab=16.89 E-value=1.3e+02 Score=20.90 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.5
Q ss_pred HHHHHHHHhhHHHHH
Q 013792 6 FAFLLALASGFAAIL 20 (436)
Q Consensus 6 ~~ll~A~~SGi~~i~ 20 (436)
.+|++|+..||+|+=
T Consensus 8 iAL~~Al~~~iLA~r 22 (29)
T PF07465_consen 8 IALVIALITGILALR 22 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999999953
Done!