Query 013792
Match_columns 436
No_of_seqs 224 out of 693
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnf_A CMP-N-acetylneuraminate 100.0 2.3E-49 7.8E-54 391.4 14.8 202 134-346 59-298 (298)
2 1ro7_A Alpha-2,3/8-sialyltrans 99.8 2E-19 6.8E-24 174.6 13.6 169 172-344 2-210 (259)
3 2p2v_A Alpha-2,3-sialyltransfe 99.8 1.9E-18 6.5E-23 170.4 12.3 170 168-344 16-227 (288)
4 2wqq_A Alpha-2,3-/2,8-sialyltr 99.7 1.2E-17 4E-22 164.7 11.7 169 172-344 2-210 (291)
5 1jb0_M Photosystem 1 reaction 17.3 80 0.0027 21.3 2.2 16 6-21 10-25 (31)
6 3sok_A Fimbrial protein; pilus 7.6 1.4E+02 0.0047 25.7 1.3 53 3-57 3-55 (151)
7 2xvc_A ESCRT-III, SSO0910; cel 6.3 3E+02 0.01 21.0 2.4 16 328-343 43-58 (59)
8 3qkg_A Protein AMBP; beta barr 6.0 3.9E+02 0.013 23.4 3.5 49 37-89 138-192 (193)
9 2ook_A Hypothetical protein; s 5.7 2.1E+02 0.0071 23.8 1.4 17 168-184 82-98 (127)
10 2dwv_A Salvador homolog 1 prot 5.1 3.2E+02 0.011 19.5 1.9 9 80-88 2-10 (49)
No 1
>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A
Probab=100.00 E-value=2.3e-49 Score=391.40 Aligned_cols=202 Identities=26% Similarity=0.437 Sum_probs=153.0
Q ss_pred hhhhcccccccccCchhHHHHHhhhcCCCCCC-CCC---CCccceEEEcCCcCCCCCCCCCcccccceeeeecCCcccCc
Q 013792 134 WRRINKGVLLNRCQNKTLCMEKLSLVLPETPP-YSP---RQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNY 209 (436)
Q Consensus 134 w~~i~~~l~L~~~~n~~~~~e~L~~~lP~~~p-~~~---~~~~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~gf 209 (436)
|.+++... ...+...+.++|++++|+.+| +.. .+|++||||||||||+||+||+|||+||||||||+||++||
T Consensus 59 w~~l~~~~---~~~~~~~v~~~l~~~lP~~~~~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eIDs~D~ViR~N~aP~~gy 135 (298)
T 2wnf_A 59 WLRLQREK---QPNNLNDTIRELFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGF 135 (298)
T ss_dssp HHHHHCCS---SCCCHHHHHHHHTTTSCSCCCTTTTGGGCSCCEEEEECCBGGGTTCCCHHHHHTSSEEEEETTCCCTTC
T ss_pred HHhccccc---ccccHHHHHHHHHHhCCCccccccccccCCCCeEEEECCccccCCCCccccccchhheeccCcCCcCcc
Confidence 66665431 223455667889999998877 765 79999999999999999999999999999999999999999
Q ss_pred cccCCccceEEEecccchhhhhhhccccccceeEEEEcch--hHHHHH--------------------hhhccccccchH
Q 013792 210 TDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTT--IHDIMS--------------------KMIQEIPIKNPV 267 (436)
Q Consensus 210 e~DVG~KTt~~~~np~s~~~l~~~~~l~~~~~~vl~vk~t--~~d~~~--------------------~~~~~v~i~nP~ 267 (436)
|+|||+|||++++||+++..+.+.. ..+++... ...++. ....++.+.||.
T Consensus 136 e~DVG~KTt~~~~n~~s~~~~~~~~-------~~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~P~ 208 (298)
T 2wnf_A 136 EADVGSKTTHHFVYPESFRELAQEV-------SMILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPA 208 (298)
T ss_dssp HHHHCSCCSEEEEBTTBCCCCCTTC-------EEEECCSSHHHHHHHHHHTTTCCCCBSSSBCCSCCCCCGGGEEEBCHH
T ss_pred cccCccCceeEEeccccccccCCCc-------eEEEeecCccchhhhhHhhcCCcccchhhhhhHHhhccCCeEEEeCHH
Confidence 9999999999999999876432211 11111110 001111 112457789999
Q ss_pred HHHhhhccC----CCCCChHHHHHHHHHhcCCeEEEeccccCCCCCcccccccCCCC--------CCCcchhHHHHHHHH
Q 013792 268 YLMLGAAFG----SAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRK--------GHTPLHGRAYYHMME 335 (436)
Q Consensus 268 fl~~~~~f~----~~~pSTGll~v~lAL~lCDeVslYGF~pd~~y~~~~HYYd~~~~--------~h~~~He~~~~q~LH 335 (436)
|+++...+| ..+||||++++++||++||||+||||++|. ++.|+||||+... .|+...|+.+++.||
T Consensus 209 ~~~~~~~~w~~~~~~~pSTG~~~v~lAl~~CDeV~lYGF~~d~-~~~~~HYyd~~~~~~~~~~~~~H~~~~E~~~~~~Lh 287 (298)
T 2wnf_A 209 FIKYVFDRWLQGHGRYPSTGILSVIFSLHICDEVDLYGFGADS-KGNWHHYWENNPSAGAFRKTGVHDGDFESNVTTILA 287 (298)
T ss_dssp HHHHHHHHTSTTCSSSCCHHHHHHHHHHHHCSEEEEESCSCCT-TSCCCBTTC-----------CCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhCCEEEEeeeccCC-CCCceecccCccccccccCCCCCCcHHHHHHHHHHH
Confidence 998765432 358999999999999999999999999875 5678999998853 233333788999999
Q ss_pred hcCcEEEEcCC
Q 013792 336 CLGLVKIHSPM 346 (436)
Q Consensus 336 ~~GVIrLh~g~ 346 (436)
++|+|+||+|+
T Consensus 288 ~~G~i~l~~g~ 298 (298)
T 2wnf_A 288 SINKIRIFKGR 298 (298)
T ss_dssp HTTSSEEECCC
T ss_pred HCCCEEEEeCC
Confidence 99999999985
No 2
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*
Probab=99.80 E-value=2e-19 Score=174.59 Aligned_cols=169 Identities=12% Similarity=0.140 Sum_probs=110.6
Q ss_pred cceEEEcCCcCCCCCCCCCcccccceeeeecCCcccC-ccccCCccceEEEecccchhh-hhhhcccc-c--cceeEEEE
Q 013792 172 GRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQN-YTDYVGKKSTFRLLNRGSAKA-LDKVVELD-E--TRKEVLIV 246 (436)
Q Consensus 172 ~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~g-fe~DVG~KTt~~~~np~s~~~-l~~~~~l~-~--~~~~vl~v 246 (436)
++|+||||||+|++..++. |+..+.|||||+++... | |||+||++.++||+.+.. ......+. . ...+.++.
T Consensus 2 k~c~ivGNGpsL~~id~~~-l~~~~~v~r~N~~~~~d~y--~VG~kt~~v~~NPsv~~~~~~~l~~~~~~~~~~~~~i~~ 78 (259)
T 1ro7_A 2 KKVIIAGNGPSLKEIDYSR-LPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMC 78 (259)
T ss_dssp CEEEEECCSGGGGCCCTTS-CCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred ceEEEEeCcHHHhhhhhhh-hccCCeEEEEeChhhcCcc--ccccccceEEECcHHHHHHHHHHHHHHhhcccccceEee
Confidence 5899999999999887775 77767799999998764 5 699999999999987643 11111011 1 11122322
Q ss_pred cc----h-----hHHHHHhhhccccccchHHHHhhhc----------cCCCCCChHHHHHHHHHhc-CCeEEEecc----
Q 013792 247 KT----T-----IHDIMSKMIQEIPIKNPVYLMLGAA----------FGSAAKGTGLKALEFALSI-CDSVDMYGF---- 302 (436)
Q Consensus 247 k~----t-----~~d~~~~~~~~v~i~nP~fl~~~~~----------f~~~~pSTGll~v~lAL~l-CDeVslYGF---- 302 (436)
.. . ..+.+.+....+ ..++.++..... +...++|||++|+.+|+.+ ||||++|||
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l~~f~~~~~~~~~~~~~r~stGl~~~~lA~~lGckeIyLyG~D~~~ 157 (259)
T 1ro7_A 79 SNYNQAHLENENFVKTFYDYFPDA-HLGYDFFKQLKDFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQ 157 (259)
T ss_dssp CCCSCTTTSCHHHHHTHHHHSTTC-EETHHHHTTSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTCCEEEEESCCTTT
T ss_pred ecccccccchHHHHHHHHHhcCcc-ccCchhhhHHHHHHHhhhhcccccccCcCHHHHHHHHHHHCCCCEEEEEeEcCCC
Confidence 11 0 111122222233 345555433222 1256889999999999999 999999999
Q ss_pred ----ccCCCCC-----cccccccCCCC--CCCcchhHHHHHHHHhcCcEEEEc
Q 013792 303 ----TVDPGYK-----EWTRYFSESRK--GHTPLHGRAYYHMMECLGLVKIHS 344 (436)
Q Consensus 303 ----~pd~~y~-----~~~HYYd~~~~--~h~~~He~~~~q~LH~~GVIrLh~ 344 (436)
|++..-. ..+|||++... .|+...|+..++.||++|-++++.
T Consensus 158 ~~~~~~Y~~~~~~~~~i~~hy~d~~~~~~~H~m~~Ef~al~~Lh~~g~v~I~n 210 (259)
T 1ro7_A 158 NGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKTYKIKLYC 210 (259)
T ss_dssp TSSCCSSCCCCHHHHHHCGGGGSSCCCCTTCCHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCcCCCCCcccccccCcccccccCCccccCchHHHHHHHHHHHhCCeEEEE
Confidence 7765322 24689987753 244333445579999999888875
No 3
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=99.76 E-value=1.9e-18 Score=170.42 Aligned_cols=170 Identities=15% Similarity=0.160 Sum_probs=108.2
Q ss_pred CCCccceEEEcCCcCCCCCCCCCcccccceeeeecCCccc-CccccCCccceEEEecccchhh-hhhhccc--c-cccee
Q 013792 168 PRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQ-NYTDYVGKKSTFRLLNRGSAKA-LDKVVEL--D-ETRKE 242 (436)
Q Consensus 168 ~~~~~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~-gfe~DVG~KTt~~~~np~s~~~-l~~~~~l--~-~~~~~ 242 (436)
....++|+||||||+|+++. |.+||+.|+|||||.++.. .| ++|++|.+.+++|+.+.. .+....+ . ....+
T Consensus 16 ~~~~~~c~IvGNGPSL~~~~-~~~i~~~~~v~rvN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~l~~~~~y~~~ 92 (288)
T 2p2v_A 16 SKNMQNIIIAGNGPSLKNIN-YKRLPREYDVFRCNQFYFEDKY--YLGKKIKAVFFNPGVFLQQYHTAKQLILKNEYEIK 92 (288)
T ss_dssp CTTCCEEEEECCSGGGGGCC-GGGSCSSCEEEEETTGGGCSBC--TTCSEESEEEECGGGHHHHHHHHHHHHHTTSCEEC
T ss_pred cCCCCeEEEEecChhhcCCC-chhhccCCEEEEEcChHhcCcc--cccccceEEEECcHHHHHHHHHHHhhhhccccccc
Confidence 45689999999999999998 9999999999999999996 47 599999999999987653 1111100 0 00111
Q ss_pred EEEEcc---------hhHHHHHhhhccccccchHHHHhh----------hccCCCCCChHHHHHHHHHhc-CCeEEEecc
Q 013792 243 VLIVKT---------TIHDIMSKMIQEIPIKNPVYLMLG----------AAFGSAAKGTGLKALEFALSI-CDSVDMYGF 302 (436)
Q Consensus 243 vl~vk~---------t~~d~~~~~~~~v~i~nP~fl~~~----------~~f~~~~pSTGll~v~lAL~l-CDeVslYGF 302 (436)
.++... ...+.+......+.+.. .++... ..+...++|||++|+.+|+.+ ||||++|||
T Consensus 93 ~i~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~l~~l~~fw~~~~~~~~~~~~r~StGl~~l~iA~~lGckeIyLyGf 171 (288)
T 2p2v_A 93 NIFCSTFNLPFIESNDFLHQFYNFFPDAKLGY-EVIENLKEFYAYIKYNEIYFNKRITSGVYMCAIAIALGYKTIYLCGI 171 (288)
T ss_dssp CEEECCCCCTTTSCHHHHHHHHHHCTTCEETH-HHHTTSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTCCEEEEESC
T ss_pred EEEeeecccccchHHHHHHHHHHhCCCceEee-hhhhHHHHHhhhhhhcccccccCcchHHHHHHHHHHcCCCEEEEeee
Confidence 121111 01112222211221112 232211 122357999999999999999 999999999
Q ss_pred ccCC-CCCcccccccCCCC------------CCCcchh----HHHHHHHHhcCcEEEEc
Q 013792 303 TVDP-GYKEWTRYFSESRK------------GHTPLHG----RAYYHMMECLGLVKIHS 344 (436)
Q Consensus 303 ~pd~-~y~~~~HYYd~~~~------------~h~~~He----~~~~q~LH~~GVIrLh~ 344 (436)
|. +....+| ||+... .+...|. +.-++.||++|=|+++.
T Consensus 172 --D~~~~~~~yh-Yd~~~~~~~~~~~~~~~~k~~~~H~m~~e~~al~~Lh~~g~v~iyn 227 (288)
T 2p2v_A 172 --DFYEGDVIYP-FEAMSTNIKTIFPGIKDFKPSNCHSKEYDIEALKLLKSIYKVNIYA 227 (288)
T ss_dssp --CTTCSSCCCS-SCSSCHHHHHHSCC--CCCCCTTCCHHHHHHHHHHHHHHHTCEEEE
T ss_pred --cCCCCCCccc-ccCccccccccccccccccCCcccCCHHHHHHHHHHHHhcCceEEE
Confidence 43 2233456 554311 1234553 44478999998777775
No 4
>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}
Probab=99.73 E-value=1.2e-17 Score=164.74 Aligned_cols=169 Identities=13% Similarity=0.140 Sum_probs=107.4
Q ss_pred cceEEEcCCcCCCCCCCCCcccccceeeeecCCcccC-ccccCCccceEEEecccchhh-hhhhccc--ccc-ceeEEEE
Q 013792 172 GRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQN-YTDYVGKKSTFRLLNRGSAKA-LDKVVEL--DET-RKEVLIV 246 (436)
Q Consensus 172 ~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~g-fe~DVG~KTt~~~~np~s~~~-l~~~~~l--~~~-~~~vl~v 246 (436)
++|+||||||+|.++. +.+||++|+|||||.++... | ++|++|.+.+++|+.... +.....+ ... ..+.++.
T Consensus 2 ~~c~IvGNGpSL~~~~-~~~i~~~~~vi~vN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~~~~~~~~~~~~i~~ 78 (291)
T 2wqq_A 2 KKVIIAGNGPSLKEID-YSRLPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMC 78 (291)
T ss_dssp CEEEEECCSGGGGCCC-GGGCCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred CcEEEEeCchhhccCc-hhhhccCCeEEEEcCccccccc--ccccCccEEEEchHHHHHHHHHHHHHHhccccccceeee
Confidence 5899999999999997 99999999999999999964 6 499999999999986643 1111000 111 1122222
Q ss_pred cch-h-----HHH---HHhhhccccccchHHHHhhhcc----------CCCCCChHHHHHHHHHhc-CCeEEEecc----
Q 013792 247 KTT-I-----HDI---MSKMIQEIPIKNPVYLMLGAAF----------GSAAKGTGLKALEFALSI-CDSVDMYGF---- 302 (436)
Q Consensus 247 k~t-~-----~d~---~~~~~~~v~i~nP~fl~~~~~f----------~~~~pSTGll~v~lAL~l-CDeVslYGF---- 302 (436)
... . ... +......+ ...+.++.....| ...+||||++|+.+|+.+ |+||++|||
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~v-~~~~~~l~~l~~~~~~~~~~~~~~~~r~stGl~~lslA~~lGckeIyLyGfD~~~ 157 (291)
T 2wqq_A 79 SNYNQAHLENENFVKTFYDYFPDA-HLGYDFFKQLKDFNAYFKFHEIQFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQ 157 (291)
T ss_dssp CCCSCTTTSCHHHHHTHHHHSTTC-EETHHHHTTCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTCCEEEEESCCCC-
T ss_pred eeccchhhHHHHHHHHHHhhcCce-eccHhhhhhHHHHhhhhhccccccccCccHHHHHHHHHHHcCCCEEEEEeecCCC
Confidence 111 0 011 11111222 2333444222211 246899999999999999 999999999
Q ss_pred ----ccCCCCC-----cccccccCCCC--CCCcchhHHHHHHHHhcCcEEEEc
Q 013792 303 ----TVDPGYK-----EWTRYFSESRK--GHTPLHGRAYYHMMECLGLVKIHS 344 (436)
Q Consensus 303 ----~pd~~y~-----~~~HYYd~~~~--~h~~~He~~~~q~LH~~GVIrLh~ 344 (436)
|++.... ..+|||++... .|+--.|+..++.||++|-++++.
T Consensus 158 ~~~~~~y~~~~~~~~~i~~hy~d~~~~~~~H~mp~ef~al~~Lh~~g~v~vyn 210 (291)
T 2wqq_A 158 NGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKTYKIKLYC 210 (291)
T ss_dssp ----CCSCCCCHHHHHHCGGGC-------CCCHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCcCcCCccccccCCCccccccCCCCCcCCHHHHHHHHHHHHhcCeeEEE
Confidence 6554211 23688887742 233333555689999999888875
No 5
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=17.32 E-value=80 Score=21.32 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.9
Q ss_pred HHHHHHHHhhHHHHHH
Q 013792 6 FAFLLALASGFAAILI 21 (436)
Q Consensus 6 ~~ll~A~~SGi~~i~~ 21 (436)
.+|++|+..||+|+=+
T Consensus 10 iAL~~Al~~~iLA~rL 25 (31)
T 1jb0_M 10 VALVIALLPAVLAFRL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999999543
No 6
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=7.60 E-value=1.4e+02 Score=25.66 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHhhccccccCCCCccchHHHHHHHHHHhhhhhccC
Q 013792 3 LLQFAFLLALASGFAAILIYITGVSNLYYNRISDEDYEALESLQNAFRKCVSANG 57 (436)
Q Consensus 3 ~l~~~ll~A~~SGi~~i~~y~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (436)
|+-|..++|+ -||++ .+-+-.++++-...-..+....++.++..++.+...+|
T Consensus 3 LiEllvviaI-igiLa-aia~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g 55 (151)
T 3sok_A 3 LIELMIVVAI-IGILA-AFAIPAYNDYIARSQAAEGLTLADGLKVRISDHLESGE 55 (151)
T ss_dssp HHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTC
T ss_pred HHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556666666 45555 33334555543332223444556666667777766555
No 7
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=6.27 E-value=3e+02 Score=21.02 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCcEEEE
Q 013792 328 RAYYHMMECLGLVKIH 343 (436)
Q Consensus 328 ~~~~q~LH~~GVIrLh 343 (436)
+..+++|.++|+|+|-
T Consensus 43 ~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 43 VKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCeecc
Confidence 4568899999999984
No 8
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens}
Probab=6.05 E-value=3.9e+02 Score=23.40 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHHhhhhhccCCcccc---ccccccccccccCCC---CCCCCCCCCCCC
Q 013792 37 EDYEALESLQNAFRKCVSANGLGLEA---VSGEDYCQVKINFPK---DTVPKWRDPNTG 89 (436)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~c~~~l~~~~---~~~~~w~~~~~~ 89 (436)
-+-++++.|++..+ ..|+.... ....+.|+..-+-++ -.-|.|.||+|.
T Consensus 138 l~~e~~~~f~~~~~----~~G~~~~~i~~~~q~~~C~~~~~~~~~~~~~~~~~~~~~~~ 192 (193)
T 3qkg_A 138 LRETLLQDFRVVAQ----GVGIPEDSIFTMADRGECVPGEQEPEPILIPRSAWSHPQFE 192 (193)
T ss_dssp CCHHHHHHHHHHHH----HTTCCSTTEEECBCCCCCCC---------------------
T ss_pred CCHHHHHHHHHHHH----HcCCCHHHEEECCCCCccCCcccccCccccccccccCcccc
Confidence 33456666554433 36766554 235679987777666 356899999984
No 9
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=5.74 E-value=2.1e+02 Score=23.82 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=13.8
Q ss_pred CCCccceEEEcCCcCCC
Q 013792 168 PRQFGRCAVIGNSGDLL 184 (436)
Q Consensus 168 ~~~~~~CAVVGNsGiL~ 184 (436)
...+.||||||+..-+.
T Consensus 82 ~~~~~RiAvV~d~~W~~ 98 (127)
T 2ook_A 82 KSEFERVAILGNKDWQE 98 (127)
T ss_dssp SCCEEEEEEECCSSCCT
T ss_pred HhcCCEEEEEcChHHHH
Confidence 45799999999987654
No 10
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=5.12 E-value=3.2e+02 Score=19.52 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q 013792 80 VPKWRDPNT 88 (436)
Q Consensus 80 ~~~w~~~~~ 88 (436)
.++|-+|+.
T Consensus 2 tt~W~~P~~ 10 (49)
T 2dwv_A 2 SSGSSGPLE 10 (49)
T ss_dssp CSSSCCSCC
T ss_pred eecCcCCCC
Confidence 356777764
Done!