BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013794
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FRR|A Chain A, Structure Of Human Ist1(Ntd) - (Residues 1-189)(P21)
Length = 191
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 8 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 67
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 68 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 127
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 128 AKYSKEY---GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 180
>pdb|3FRS|A Chain A, Structure Of Human Ist1(Ntd) (Residues 1-189)(P43212)
Length = 189
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKEY---GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>pdb|3GGY|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
pdb|3GGY|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
pdb|3GGZ|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|C Chain C, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|D Chain D, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
Length = 193
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 24 KCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAAN 83
K KT KM + R++ + K++A+ +Q RR +A LL + ++ A RVE +I + +
Sbjct: 11 KLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELL 70
Query: 84 EFIELFCELIVARLSIIAK--------RRECPADLKEGIASVIFAAPRCSEIPELGAIRD 135
E +EL+CEL++AR+ +I + + E I S+I+A E+ EL ++D
Sbjct: 71 EILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKD 130
Query: 136 IFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDTTE 195
+ K +FV+ + + V +I+K S P E+ +KEIAK + + + E
Sbjct: 131 LMAWKINVEFVNGV--IADHIDVPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPYSKLE 188
Query: 196 SEM 198
+ +
Sbjct: 189 NSL 191
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 134 RDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDT 193
R IF++KYGKD VS A ++ + + ML++ + T E L K++ + +ID +
Sbjct: 337 RKIFDEKYGKDLVSKAREVSEDFVKDNMLVDSDLYYSSTWESGLS--KKLKNKKEIDEEK 394
Query: 194 TESEMELLKPAEERIGGPDTFFS 216
+ ++ L A + IG P +++
Sbjct: 395 VKEVVDFLNAAYKEIGNPPKYYA 417
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 134 RDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDT 193
R IF++KYGKD VS A ++ + + ML++ + T E L K++ + +ID +
Sbjct: 322 RKIFDEKYGKDLVSKAREVSEDFVKDNMLVDSDLYYSSTWESGLS--KKLKNKKEIDEEK 379
Query: 194 TESEMELLKPAEERIGGPDTFFS 216
+ ++ L A + IG P +++
Sbjct: 380 VKEVVDFLNAAYKEIGNPPKYYA 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,831,091
Number of Sequences: 62578
Number of extensions: 394799
Number of successful extensions: 855
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 9
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)