BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013794
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54I39|IST1L_DICDI IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3
SV=1
Length = 369
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 13 IFLFFKKFNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEH 72
+F F ++S K K K+AV+RI++L+NK+ +VR +R++A LL+ K + +ARIRVE
Sbjct: 1 MFGFGPSYDSYKLKVQLKLAVSRIQILKNKKANIVRDEKRNVAELLRKKNEESARIRVET 60
Query: 73 VIREQNVLAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELGA 132
+IR++ ++ + IE+ CEL+ AR+++I E P ++KE I ++++++ R +IPEL
Sbjct: 61 IIRDEYLIECFQIIEVLCELLHARINLINATTEMPLEMKESIFTLVYSSQRI-QIPELEQ 119
Query: 133 IRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDW 191
I++ + KYGK + A + ++ VN ++ KLS TP + + + EIA++F +DW
Sbjct: 120 IKNQLKAKYGKGLENEA-NCHCSTHVNPKIVHKLSYATPDPSIIFQTLSEIAEKFNVDW 177
>sp|P53990|IST1_HUMAN IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1
Length = 364
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 106/190 (55%), Gaps = 6/190 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDTTES 196
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKEYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSV 182
Query: 197 EMELLKPAEE 206
M P E
Sbjct: 183 VMAEAPPGVE 192
>sp|Q568Z6|IST1_RAT IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1
Length = 366
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKEYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|Q9CX00|IST1_MOUSE IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1
Length = 362
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKEYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|Q5R6G8|IST1_PONAB IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1
Length = 364
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDTTES 196
KY K + R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKGYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSV 182
Query: 197 EMELLKPAEE 206
M P E
Sbjct: 183 VMAEAPPGVE 192
>sp|Q3ZBV1|IST1_BOVIN IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1
Length = 364
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
+ + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 IKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKEYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|P53843|IST1_YEAST Vacuolar protein sorting-associated protein IST1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IST1 PE=1
SV=1
Length = 298
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 10/178 (5%)
Query: 22 SSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLA 81
+ K KT KM + R++ + K++A+ +Q RR +A LL + ++ A RVE +I + +
Sbjct: 9 TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIE 68
Query: 82 ANEFIELFCELIVARLSIIAK--------RRECPADLKEGIASVIFAAPRCSEIPELGAI 133
E +EL+CEL++AR+ +I + + E I S+I+A E+ EL +
Sbjct: 69 LLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQL 128
Query: 134 RDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDW 191
+D+ K +FV+ + + V +I+K S P E+ +KEIAK + + +
Sbjct: 129 KDLMAWKINVEFVNGV--IADHIDVPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPY 184
>sp|O74490|IST1_SCHPO Vacuolar protein sorting-associated protein ist1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ist1 PE=3 SV=1
Length = 271
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAA 82
S+ + K+A +RI++LR K EA+ +Q RR++AL L+S A A+ R+E +I + +
Sbjct: 2 SRLQIQLKLAASRIEILRQKEEALAKQARRNVALGLKSYSPALAKARIEPLIMQDIYIEL 61
Query: 83 NEFIELFCELIVARLSIIAKRR-ECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKY 141
E +++ E++ R ++ KR K + V+ AAP+ +I EL + D K Y
Sbjct: 62 LELLQVDVEILANRCVVLEKRAFNDSMSFKSSLYHVMAAAPQL-QIKELRFVHDFLVKLY 120
Query: 142 GKDF 145
GK+F
Sbjct: 121 GKEF 124
>sp|Q8U1S6|CMR2_PYRFU CRISPR system Cmr subunit Cmr2 OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=cmr2 PE=1 SV=1
Length = 871
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 134 RDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDT 193
R IF++KYGKD VS A ++ + + ML++ + T E L K++ + +ID +
Sbjct: 515 RKIFDEKYGKDLVSKAREVSEDFVKDNMLVDSDLYYSSTWESGLS--KKLKNKKEIDEEK 572
Query: 194 TESEMELLKPAEERIGGPDTFFS 216
+ ++ L A + IG P +++
Sbjct: 573 VKEVVDFLNAAYKEIGNPPKYYA 595
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98
PE=1 SV=4
Length = 1817
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 247 GTMQFEDTASAAEA------AADSAKKAVAAAQAAAYLASRDSKQFTQ----AFGNFHMS 296
GT F A++ + +A A L S + F Q FGNF S
Sbjct: 64 GTSSFSQPATSTSTGFGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGTS 123
Query: 297 QSSYGSHYLSHEEKRPTDVGSGNFHRRNSYNASSANSDIKFD 338
SS G ++ P SG+ +S+ A+ + IKF+
Sbjct: 124 TSSGGLFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFN 165
>sp|Q14F97|YCF2_POPAL Protein ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1
Length = 2282
Score = 32.3 bits (72), Expect = 7.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 319 NFHRRNSYNASSANSDIKFDVCDHDQDN 346
+FH RN+ S N+D F + HDQDN
Sbjct: 973 SFHTRNNRRKSFDNTDSSFSMISHDQDN 1000
>sp|A4GYV4|YCF2_POPTR Protein ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3 SV=1
Length = 2285
Score = 32.3 bits (72), Expect = 7.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 319 NFHRRNSYNASSANSDIKFDVCDHDQDN 346
+FH RN+ S N+D F + HDQDN
Sbjct: 976 SFHTRNNRRKSFDNTDSSFSMISHDQDN 1003
>sp|P27558|VL2_HPV41 Minor capsid protein L2 OS=Human papillomavirus type 41 GN=L2 PE=3
SV=1
Length = 554
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 307 HEEKRPTDVGSGNFHRRNS--------YNASSANSDIKFDVCDHDQDNKMEGPPGGKVLR 358
HE++ PTD + F N+ Y+ S DI+ D PG V+
Sbjct: 141 HEQRFPTD--AAPFDNGNTEITTIPSQYDVSGGGVDIQIIELPSVND------PGPSVVT 192
Query: 359 RHSYNAPTAHSDIQWD---ESDYDEEIEVEAPSGCTSL 393
R YN PT ++ D E+ + I V A SG TS+
Sbjct: 193 RTQYNNPTFEVEVSTDISGETSSTDNIIVGAESGGTSV 230
>sp|Q8R086|SUOX_MOUSE Sulfite oxidase, mitochondrial OS=Mus musculus GN=Suox PE=1 SV=2
Length = 546
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 191 WDTTESEM-ELLKPAEERIGGPDTFFSASSLPVKHVPVQSVEQNRPHTRSVVSNRERGTM 249
W T SE+ ++ K + GGP A+ P++ N+PH R +++ + G +
Sbjct: 102 WVTLGSEVFDVTKFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQPHVRELLAEYKIGEL 161
Query: 250 QFEDTASAAEAAAD 263
ED+ S + A+D
Sbjct: 162 NPEDSMSPSVEASD 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,563,898
Number of Sequences: 539616
Number of extensions: 6616311
Number of successful extensions: 26192
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 26112
Number of HSP's gapped (non-prelim): 116
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)