Query 013794
Match_columns 436
No_of_seqs 173 out of 311
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2027 Spindle pole body prot 100.0 4.1E-58 8.8E-63 467.2 27.0 182 31-212 1-183 (388)
2 PF03398 Ist1: Regulator of Vp 100.0 7.1E-57 1.5E-61 411.8 15.6 165 26-191 1-165 (165)
3 KOG3232 Vacuolar assembly/sort 93.0 3.2 6.9E-05 39.9 13.6 124 54-192 39-168 (203)
4 KOG3230 Vacuolar assembly/sort 87.2 32 0.0007 33.9 16.1 164 15-192 3-175 (224)
5 PF03882 KicB: KicB killing fa 71.2 69 0.0015 34.6 12.4 95 23-118 158-257 (440)
6 PF03357 Snf7: Snf7; InterPro 70.7 47 0.001 29.6 9.8 76 27-102 4-79 (171)
7 COG3437 Response regulator con 65.2 1.4E+02 0.0031 31.8 13.2 89 83-194 190-282 (360)
8 COG1405 SUA7 Transcription ini 64.7 40 0.00086 34.4 8.9 118 75-194 93-232 (285)
9 PF08167 RIX1: rRNA processing 62.1 1.3E+02 0.0028 27.7 12.8 128 46-194 22-152 (165)
10 TIGR03321 alt_F1F0_F0_B altern 57.2 89 0.0019 30.6 9.7 77 103-186 157-244 (246)
11 PRK05260 condesin subunit F; P 51.8 1.3E+02 0.0027 32.8 10.3 79 24-103 159-239 (440)
12 PRK00423 tfb transcription ini 49.3 55 0.0012 33.3 7.1 100 76-190 119-233 (310)
13 PF10607 CLTH: CTLH/CRA C-term 48.0 1.3E+02 0.0027 26.3 8.3 25 49-73 3-27 (145)
14 PRK14136 recX recombination re 46.6 1.8E+02 0.0039 30.4 10.2 126 48-188 176-307 (309)
15 PRK13989 cell division topolog 44.1 27 0.00058 29.6 3.3 46 9-60 1-53 (84)
16 PRK13991 cell division topolog 42.0 36 0.00078 29.1 3.8 47 9-60 1-52 (87)
17 COG0851 MinE Septum formation 38.2 35 0.00077 29.5 3.1 45 9-60 1-52 (88)
18 PF12238 MSA-2c: Merozoite sur 35.5 77 0.0017 31.2 5.4 86 10-95 31-116 (205)
19 TIGR01215 minE cell division t 34.1 92 0.002 26.1 5.0 46 9-60 1-51 (81)
20 PF05099 TerB: Tellurite resis 33.6 1.3E+02 0.0028 26.0 6.1 114 92-209 5-129 (140)
21 cd05394 RasGAP_RASA2 RASA2 (or 30.5 1.9E+02 0.0041 30.1 7.5 32 83-116 130-161 (313)
22 KOG1497 COP9 signalosome, subu 30.4 6.6E+02 0.014 27.0 11.4 125 45-187 20-154 (399)
23 PRK00296 minE cell division to 29.7 77 0.0017 26.9 3.8 46 9-60 1-52 (86)
24 PF00570 HRDC: HRDC domain Blo 29.4 38 0.00083 26.0 1.8 63 80-148 2-67 (68)
25 PF00452 Bcl-2: Apoptosis regu 28.9 85 0.0018 26.0 4.0 50 130-193 1-52 (101)
26 PF05928 Zea_mays_MuDR: Zea ma 27.9 61 0.0013 31.2 3.2 29 251-279 9-44 (207)
27 PF08542 Rep_fac_C: Replicatio 26.5 1.8E+02 0.0039 23.3 5.4 41 52-94 9-49 (89)
28 PLN02976 amine oxidase 23.9 1.6E+03 0.034 29.1 14.4 196 29-275 1253-1452(1713)
29 cd05137 RasGAP_CLA2_BUD2 CLA2/ 23.8 3.4E+02 0.0073 29.1 8.2 36 79-116 194-229 (395)
30 PF10475 DUF2450: Protein of u 23.2 5.5E+02 0.012 25.7 9.2 105 8-113 55-176 (291)
31 smart00741 SapB Saposin (B) Do 21.1 3.5E+02 0.0077 20.1 6.4 57 89-150 5-61 (76)
32 PRK13988 cell division topolog 21.0 2.1E+02 0.0046 25.0 5.0 47 8-60 3-54 (97)
33 KOG4572 Predicted DNA-binding 20.9 1.1E+03 0.023 28.6 11.6 90 84-174 467-575 (1424)
34 PF06786 UPF0253: Uncharacteri 20.5 2.9E+02 0.0063 22.8 5.3 47 87-136 2-50 (66)
35 PF11985 DUF3486: Protein of u 20.0 2E+02 0.0043 26.9 5.0 64 105-169 9-83 (180)
No 1
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-58 Score=467.17 Aligned_cols=182 Identities=58% Similarity=0.933 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCChhH
Q 013794 31 MAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARLSIIAKRRECPADL 110 (436)
Q Consensus 31 LAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLlaRl~lIe~~kecP~eL 110 (436)
||++||++|+|||+++++|+|+|||+||+.|+.++|||||||||+|||+|+||||||+|||||++||++|+++++||.||
T Consensus 1 l~~~Rl~lLknKk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l 80 (388)
T KOG2027|consen 1 LAINRLKLLKNKKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDL 80 (388)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 013794 111 KEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQID 190 (436)
Q Consensus 111 kEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~~Ps~elv~kyL~EIAkEy~I~ 190 (436)
+|||+|||||||||+|||||++||++|+.|||++|+..|.+++++|+||++||+||++..|+.++|.+||+|||++|||+
T Consensus 81 ~EAVsSlifAA~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiekLs~~~P~~e~k~k~lkEIA~ey~v~ 160 (388)
T KOG2027|consen 81 KEAVSSLIFAAPRLSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEKLSVEAPPKELKEKYLKEIAKEYNVN 160 (388)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHHhcCCCCcHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHhcCc-hhhhcCCCC
Q 013794 191 WDTTESEMELLKP-AEERIGGPD 212 (436)
Q Consensus 191 w~p~~~e~~l~~~-~e~~l~~~~ 212 (436)
|+++..+.....+ .++.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s 183 (388)
T KOG2027|consen 161 WEPDSLSTSEEKSNHEDLLIDPS 183 (388)
T ss_pred cccCccccccCCCchhhcccccc
Confidence 9999888877776 344444443
No 2
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=100.00 E-value=7.1e-57 Score=411.79 Aligned_cols=165 Identities=53% Similarity=0.923 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 013794 26 KTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARLSIIAKRRE 105 (436)
Q Consensus 26 Kt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLlaRl~lIe~~ke 105 (436)
|++||||++||+++|+||.++++++|+|||+||++|+.++||+|||+||+||+++++||+||+|||+|++|+++|+++++
T Consensus 1 K~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~ 80 (165)
T PF03398_consen 1 KTQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKE 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TS
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 013794 106 CPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAK 185 (436)
Q Consensus 106 cP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~~Ps~elv~kyL~EIAk 185 (436)
||++|+|||+|||||||||+|+|||+.||++|+.|||++|+.+|++|+ +++||++|++||++.+|+.++|.+||.|||+
T Consensus 81 ~p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~-~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~ 159 (165)
T PF03398_consen 81 CPPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENR-DNGVNPRIVEKLSVKPPSEELVEKYLKEIAK 159 (165)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTT-TTTS-HHHHHHCS-S---CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhc-CCCcCHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7899999999999999999999999999999
Q ss_pred HcCCCC
Q 013794 186 EFQIDW 191 (436)
Q Consensus 186 Ey~I~w 191 (436)
+|||+|
T Consensus 160 e~~i~w 165 (165)
T PF03398_consen 160 EYGIPW 165 (165)
T ss_dssp HCT-SH
T ss_pred HcCCCC
Confidence 999999
No 3
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=3.2 Score=39.93 Aligned_cols=124 Identities=21% Similarity=0.272 Sum_probs=81.0
Q ss_pred HHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCchhHH
Q 013794 54 IALLLQSKQDATARIRVEHVIREQNVLAANEFIELF--CELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELG 131 (436)
Q Consensus 54 IAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLEly--CElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlPEL~ 131 (436)
+-.-|+.|..+-|||-+|+-||-.+ +++.+|-+- .+-+.+|+..--+.+.+...+---|-++=-|-.- .. |.
T Consensus 39 ~kkAi~kgN~dvArIyAeNAIRkkn--e~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alkt-mN---Le 112 (203)
T KOG3232|consen 39 LKKAIQKGNMDVARIYAENAIRKKN--EAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKT-MN---LE 112 (203)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC---HH
Confidence 4456889999999999999999876 455555543 6778888877666555544433333332221111 12 33
Q ss_pred HHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcC----CCCCCHHHHHHHHHHHHHHcCCCCC
Q 013794 132 AIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLS----VRTPTGEVKLKVMKEIAKEFQIDWD 192 (436)
Q Consensus 132 ~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLS----v~~Ps~elv~kyL~EIAkEy~I~w~ 192 (436)
.| .+++.||-+.|... .|...++++-- .-..+...|..+|.+.|.|+|+++.
T Consensus 113 ki-s~~MDkFE~qFedl--------dvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlEln 168 (203)
T KOG3232|consen 113 KI-SQLMDKFEKQFEDL--------DVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELN 168 (203)
T ss_pred HH-HHHHHHHHHHhhhh--------hhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhh
Confidence 33 45778899999643 34445555532 2234578899999999999999986
No 4
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.21 E-value=32 Score=33.87 Aligned_cols=164 Identities=17% Similarity=0.227 Sum_probs=110.1
Q ss_pred hhcCCCChhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 013794 15 LFFKKFNSSKC----KTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFC 90 (436)
Q Consensus 15 lf~~~f~~sKc----Kt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyC 90 (436)
+|++..+|.-+ |..|.-|+--|.-=+.+-+.+-|.+-.||=..-++|+.+-.+|-+-+|||--+++.=|...---.
T Consensus 3 lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqi 82 (224)
T KOG3230|consen 3 LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQI 82 (224)
T ss_pred cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887543 34444454444444455555556666777778889999999999999999999999999998888
Q ss_pred HHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHc-----HHHHHHHhhcCCCCCCCHHHHhh
Q 013794 91 ELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYG-----KDFVSAATDLRPNSGVNRMLIEK 165 (436)
Q Consensus 91 ElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYG-----keFv~aa~elr~~~~VN~kIv~K 165 (436)
.-+..|+..+..+...-..++.|- -.+-+-.|-=.+|-++.|-..|..--- .|+...|+++.-+. ...
T Consensus 83 qaVSl~iQtlkss~sma~aMkGaT-kam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~-~ed----- 155 (224)
T KOG3230|consen 83 QAVSLRIQTLKSSTSMAQAMKGAT-KAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGD-DED----- 155 (224)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cch-----
Confidence 999999999987755555555433 234445564599999998888765421 35666666543221 111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCCC
Q 013794 166 LSVRTPTGEVKLKVMKEIAKEFQIDWD 192 (436)
Q Consensus 166 LSv~~Ps~elv~kyL~EIAkEy~I~w~ 192 (436)
.--+.++|.++|.|| ||+..
T Consensus 156 ---EEEtd~lvnqVLDEi----Gvdl~ 175 (224)
T KOG3230|consen 156 ---EEETDDLVNQVLDEI----GVDLA 175 (224)
T ss_pred ---hHHHHHHHHHHHHHH----cccHH
Confidence 112355677777766 66553
No 5
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=71.16 E-value=69 Score=34.60 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhhh
Q 013794 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQ--NVLAANEFIELFCELIVARLSII 100 (436)
Q Consensus 23 sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd--~~ieayEiLElyCElLlaRl~lI 100 (436)
.-+|-.++-...+|.+-|+--..+..+.|.|||.||.+. ...|-..+|+||.|- .+-|+-++|+-=-+-|.+.+--|
T Consensus 158 a~LkySVaeifd~Idl~QR~MDeqQ~~vk~eIA~LL~qd-W~~AI~~Ce~LL~EtsgtLRELqdtL~aagd~lqa~Ll~I 236 (440)
T PF03882_consen 158 APLKYSVAEIFDSIDLNQRAMDEQQQSVKEEIAALLNQD-WRAAIQSCEQLLDETSGTLRELQDTLEAAGDKLQAQLLRI 236 (440)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 347777778889999999999999999999999999887 667999999999974 67889999999999998888888
Q ss_pred hhc---CCCChhHHHHHHHHH
Q 013794 101 AKR---RECPADLKEGIASVI 118 (436)
Q Consensus 101 e~~---kecP~eLkEAVsSLI 118 (436)
+.. +.-..=+.+++.+|.
T Consensus 237 Qe~~~~~~~l~~v~~l~~~Lq 257 (440)
T PF03882_consen 237 QEAVMGRDELEFVDNLIFDLQ 257 (440)
T ss_dssp HHHHHCSSS-HHHHHHHHHHH
T ss_pred HHHHhcCccHHHHHHHHHHHH
Confidence 753 332333455555543
No 6
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=70.70 E-value=47 Score=29.62 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 013794 27 TAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARLSIIAK 102 (436)
Q Consensus 27 t~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLlaRl~lIe~ 102 (436)
..||.++.+|.-...+-+..++.....|-.+++.|+-+.|++-+...++-...++-+.-.-.-.+-+..++.....
T Consensus 4 ~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~ 79 (171)
T PF03357_consen 4 LKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQS 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888899999999999999999999999998888877666665555444444555555544443
No 7
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=65.18 E-value=1.4e+02 Score=31.76 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcH----HHHHHHhhcCCCCCC
Q 013794 83 NEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGK----DFVSAATDLRPNSGV 158 (436)
Q Consensus 83 yEiLElyCElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGk----eFv~aa~elr~~~~V 158 (436)
.+=+..||++|..+++ |.|....+|+-|+.+-||=-+.. =+-.-.|=|+ +|. ++.. ...+
T Consensus 190 ~~Rv~~~~~~lAe~lg-----------Lse~~v~~i~~AapLHDIGKvai-PD~ILlKpg~Lt~ee~~--imk~--H~~~ 253 (360)
T COG3437 190 LERVAQYSELLAELLG-----------LSEEEVDLIKKAAPLHDIGKVAI-PDSILLKPGKLTSEEFE--IMKG--HPIL 253 (360)
T ss_pred HHHHHHHHHHHHHHhC-----------CCHHHHHHHHhccchhhcccccC-ChHHhcCCCCCCHHHHH--HHhc--chHH
Confidence 3447789999999988 55566666666666556511111 0111112222 221 1111 0112
Q ss_pred CHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCc
Q 013794 159 NRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDTT 194 (436)
Q Consensus 159 N~kIv~KLSv~~Ps~elv~kyL~EIAkEy~I~w~p~ 194 (436)
..+++..+.. .++...|||..|.=.||.+
T Consensus 254 G~~il~~s~~-------~mq~a~eIa~~HHErwDGs 282 (360)
T COG3437 254 GAEILKSSER-------LMQVAAEIARHHHERWDGS 282 (360)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHhhhccCCC
Confidence 2233332221 6899999999999999976
No 8
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=64.68 E-value=40 Score=34.43 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=65.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhh---------cCCC--ChhHHHHHHHHHhhCCCCCCch----hHHHHHHHHHH
Q 013794 75 REQNVLAANEFIELFCELIVARLSIIAK---------RREC--PADLKEGIASVIFAAPRCSEIP----ELGAIRDIFEK 139 (436)
Q Consensus 75 rEd~~ieayEiLElyCElLlaRl~lIe~---------~kec--P~eLkEAVsSLIfAApR~sDlP----EL~~IR~~f~~ 139 (436)
.|-|+..++..|+-+|+.|.-=-...+. .+.. .-.+.--++..||++.|...+| |+..+...-..
T Consensus 93 ~ernl~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~prtl~eIa~a~~V~~k 172 (285)
T COG1405 93 KERNLITALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRTLDEIAKALGVSKK 172 (285)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHH
Confidence 5777888888888888776322222211 1111 2334555688999999976555 66666665567
Q ss_pred HHcHHHHHHHhhcCCC-------CCCCHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCc
Q 013794 140 KYGKDFVSAATDLRPN-------SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDTT 194 (436)
Q Consensus 140 KYGkeFv~aa~elr~~-------~~VN~kIv~KLSv~~Ps~elv~kyL~EIAkEy~I~w~p~ 194 (436)
.+|+-|-..+.++... ..| +++..+|... +.-..+-.-|..-|++.|+.|...
T Consensus 173 ei~rtyr~~~~~L~l~~~~~~p~~yi-~rf~s~L~l~-~~v~~~a~ei~~~~~~~g~~~Gk~ 232 (285)
T COG1405 173 EIGRTYRLLVRELKLKIPPVDPSDYI-PRFASKLGLS-DEVRRKAIEIVKKAKRAGLTAGKS 232 (285)
T ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHH-HHHHHHcCCC-HHHHHHHHHHHHHHHHhCcccCCC
Confidence 7777665444443211 112 2456666664 223333334445555666666543
No 9
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=62.07 E-value=1.3e+02 Score=27.66 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHH--HHHHHHHHHHHHHH-HhhhhhcCCCChhHHHHHHHHHhhCC
Q 013794 46 VVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAA--NEFIELFCELIVAR-LSIIAKRRECPADLKEGIASVIFAAP 122 (436)
Q Consensus 46 ~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~iea--yEiLElyCElLlaR-l~lIe~~kecP~eLkEAVsSLIfAAp 122 (436)
.......-|-.||+.+. +..|-.++.-=.-.++. +|++..+|...+.. +.+|++ .+-+.-++-||.+|-.--.
T Consensus 22 ~l~~l~~ri~~LL~s~~---~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKS---AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHhCCCC---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 33444455777886654 55566666665666666 88885555544444 455554 4555556667766655556
Q ss_pred CCCCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCc
Q 013794 123 RCSEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDTT 194 (436)
Q Consensus 123 R~sDlPEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~~Ps~elv~kyL~EIAkEy~I~w~p~ 194 (436)
+....||| .|++.+-+-++ |+..++.+-. + ..-.+.++..|..+-..|--.+.|-
T Consensus 98 ~~~~~p~l--~Rei~tp~l~~-~i~~ll~l~~----------~----~~~~~~~l~~L~~ll~~~ptt~rp~ 152 (165)
T PF08167_consen 98 LIRGKPTL--TREIATPNLPK-FIQSLLQLLQ----------D----SSCPETALDALATLLPHHPTTFRPF 152 (165)
T ss_pred HhcCCCch--HHHHhhccHHH-HHHHHHHHHh----------c----cccHHHHHHHHHHHHHHCCccccch
Confidence 77799999 88888887555 8877765422 1 4456777888888888777666664
No 10
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.18 E-value=89 Score=30.61 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=49.0
Q ss_pred cCCCChhHHHHHHHHHhhCC---CC-C----CchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCCCCCH-
Q 013794 103 RRECPADLKEGIASVIFAAP---RC-S----EIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTG- 173 (436)
Q Consensus 103 ~kecP~eLkEAVsSLIfAAp---R~-s----DlPEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~~Ps~- 173 (436)
-...|++-+.++..++.... ++ + +=.+...|+..|..+||++.. + ...|+|.|+.=+-++..+.
T Consensus 157 l~~l~~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~~~v~-----~--~~~vdp~ligGi~l~~g~~~ 229 (246)
T TIGR03321 157 LRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDTIRETLGPEIR-----L--RFQTEPDLIGGIELTAGGHK 229 (246)
T ss_pred hhcCCHHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHHHHHHHHHCCCee-----E--EeeeCchhcCceEEEECCEE
Confidence 35778888888855555321 11 1 234778999999999997532 1 3578888888777766652
Q ss_pred --HHHHHHHHHHHHH
Q 013794 174 --EVKLKVMKEIAKE 186 (436)
Q Consensus 174 --elv~kyL~EIAkE 186 (436)
..+-.+|.++.+.
T Consensus 230 id~Si~~~L~~l~~~ 244 (246)
T TIGR03321 230 LAWSVDDYLESLEED 244 (246)
T ss_pred EechHHHHHHHHHhh
Confidence 2345566665543
No 11
>PRK05260 condesin subunit F; Provisional
Probab=51.79 E-value=1.3e+02 Score=32.80 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHhhhh
Q 013794 24 KCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIRE--QNVLAANEFIELFCELIVARLSIIA 101 (436)
Q Consensus 24 KcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrE--d~~ieayEiLElyCElLlaRl~lIe 101 (436)
-+|-.++-...+|.+-|+--.++..+.|.|||.||.+. ...|-..+|+++.| .++-|+-++|+-=-+-|.+.+-.|+
T Consensus 159 ~LkySVaeifd~Idl~QR~mDeqQ~~vk~eIA~LL~qd-W~~AI~~Ce~LLdEtsgtLRELqdtL~aagD~lqaqLl~IQ 237 (440)
T PRK05260 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKD-WRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQ 237 (440)
T ss_pred cCcCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35666777888999999999999999999999999987 66799999999997 4678899999999999999988888
Q ss_pred hc
Q 013794 102 KR 103 (436)
Q Consensus 102 ~~ 103 (436)
..
T Consensus 238 ~~ 239 (440)
T PRK05260 238 DA 239 (440)
T ss_pred HH
Confidence 54
No 12
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=49.32 E-value=55 Score=33.25 Aligned_cols=100 Identities=17% Similarity=0.293 Sum_probs=49.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhhh----------cCCC-ChhHHHHHHHHHhhCCCCCCch----hHHHHHHHHHHH
Q 013794 76 EQNVLAANEFIELFCELIVARLSIIAK----------RREC-PADLKEGIASVIFAAPRCSEIP----ELGAIRDIFEKK 140 (436)
Q Consensus 76 Ed~~ieayEiLElyCElLlaRl~lIe~----------~kec-P~eLkEAVsSLIfAApR~sDlP----EL~~IR~~f~~K 140 (436)
|.++..+|..|..+|+.|--.-.+++. .+.. --.+.--++..||.|-|...+| |+..+-..-...
T Consensus 119 er~l~~a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~prtl~eI~~~~~v~~k~ 198 (310)
T PRK00423 119 ERNLAFALSELDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVPRTLDEIAEVSRVSRKE 198 (310)
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCHHH
Confidence 445666666777777654322222221 1111 1123444578899998886666 333332222333
Q ss_pred HcHHHHHHHhhcCCCCCCCHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 013794 141 YGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQID 190 (436)
Q Consensus 141 YGkeFv~aa~elr~~~~VN~kIv~KLSv~~Ps~elv~kyL~EIAkEy~I~ 190 (436)
.|+.|-. |++.|....|.. .-..|+..++...+++
T Consensus 199 i~~~~~~--------------l~k~L~~~~~~~-~p~~~i~r~~~~L~L~ 233 (310)
T PRK00423 199 IGRCYRF--------------LLRELNLKLPPT-DPIDYVPRFASELGLS 233 (310)
T ss_pred HHHHHHH--------------HHHHhCCCCCCC-CHHHHHHHHHHHcCCC
Confidence 4444422 333344333332 1346777777777764
No 13
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=47.96 E-value=1.3e+02 Score=26.34 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHH
Q 013794 49 QMRRDIALLLQSKQDATARIRVEHV 73 (436)
Q Consensus 49 q~RrDIAqLL~~Gk~e~ArIRVE~l 73 (436)
+.|++|-+.|..|+.+.|.-+++..
T Consensus 3 ~~r~~I~~~I~~g~i~~Ai~w~~~~ 27 (145)
T PF10607_consen 3 KERKKIRQAILNGDIDPAIEWLNEN 27 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4688999999999999998888664
No 14
>PRK14136 recX recombination regulator RecX; Provisional
Probab=46.55 E-value=1.8e+02 Score=30.41 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhc-CchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-----hhhhcCCCChhHHHHHHHHHhhC
Q 013794 48 RQMRRDIALLLQS-KQDATARIRVEHVIREQNVLAANEFIELFCELIVARLS-----IIAKRRECPADLKEGIASVIFAA 121 (436)
Q Consensus 48 kq~RrDIAqLL~~-Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLlaRl~-----lIe~~kecP~eLkEAVsSLIfAA 121 (436)
...+.||.+.|+. |-.+..--.|=.-+.+.++|+=..+.+.|+..-..+.+ .--.+|.++.+|.|.+-..+
T Consensus 176 eRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~eLIEqALeei--- 252 (309)
T PRK14136 176 EYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRASRVGSARIVSELKRHAVGDALVESVGAQL--- 252 (309)
T ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCHHHHHHHHHhc---
Confidence 3456777766665 43333333333333455666666666666654332211 11236889988887654422
Q ss_pred CCCCCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 013794 122 PRCSEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQ 188 (436)
Q Consensus 122 pR~sDlPEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~~Ps~elv~kyL~EIAkEy~ 188 (436)
+..|+..++.++..||+. +... ..--.+++.-|.-+=.+.+++.++|+..-.++|
T Consensus 253 ----eEDE~E~A~~L~eKK~~~-~~~d-------~kek~K~iRfL~rRGFS~D~I~~vLk~~~de~~ 307 (309)
T PRK14136 253 ----RETEFERAQAVWRKKFGA-LPQT-------PAERAKQARFLAARGFSSATIVKLLKVGDDEFG 307 (309)
T ss_pred ----cHhHHHHHHHHHHHHhcc-cCcC-------HHHHHHHHHHHHHCCCCHHHHHHHHHhchhccc
Confidence 346788999999999975 2110 011246788889999999999999987766653
No 15
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=44.11 E-value=27 Score=29.59 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=28.5
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHhc
Q 013794 9 MKLSIFLFFKKFNSSKCKTAAKMAVARIKLLR-NKRE------AVVRQMRRDIALLLQS 60 (436)
Q Consensus 9 ~~~~~~lf~~~f~~sKcKt~LKLAisRLklLq-nKr~------a~~kq~RrDIAqLL~~ 60 (436)
|+||+.||+++= ..-..|-.||+++- ..|. ...-++|+||-+.+..
T Consensus 1 M~l~~~f~~~k~------~Sa~vAKeRLqiiLa~dR~~~~~~p~~l~~lk~dil~VIsK 53 (84)
T PRK13989 1 MSILSFLLGEKK------KTASVAKERLQIIIAHERVGGRQPPDYLPALQKELVAVISK 53 (84)
T ss_pred CchHHHhhcCCC------CcHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 788998887632 23344667777632 2232 2567888888776654
No 16
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=41.98 E-value=36 Score=29.12 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=29.1
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHhc
Q 013794 9 MKLSIFLFFKKFNSSKCKTAAKMAVARIKLLRNK-R----EAVVRQMRRDIALLLQS 60 (436)
Q Consensus 9 ~~~~~~lf~~~f~~sKcKt~LKLAisRLklLqnK-r----~a~~kq~RrDIAqLL~~ 60 (436)
|+||+-||+++= +..-..|-.||+++--. | -....++|+||-+.+..
T Consensus 1 M~~l~~~f~~k~-----~~Sa~~AKeRLqliLahdR~~~~p~~l~~lk~eil~VIsK 52 (87)
T PRK13991 1 MSFLDGLFGRKR-----DSSSELAKQRLLTVLVHDRVKLTPEMMEQMKADLAEVIKR 52 (87)
T ss_pred CChHHHhhcCCC-----CCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 788999998631 12345577788774332 2 24666777777665544
No 17
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=38.21 E-value=35 Score=29.45 Aligned_cols=45 Identities=27% Similarity=0.462 Sum_probs=27.1
Q ss_pred HHHHHhhhcCC-CChhhHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHhc
Q 013794 9 MKLSIFLFFKK-FNSSKCKTAAKMAVARIKLLR-NKR-----EAVVRQMRRDIALLLQS 60 (436)
Q Consensus 9 ~~~~~~lf~~~-f~~sKcKt~LKLAisRLklLq-nKr-----~a~~kq~RrDIAqLL~~ 60 (436)
|++|+-||+++ =.++- |-.||+++- +.| -...-++|+||-..+..
T Consensus 1 Msl~dff~~r~~~Sa~~-------AkeRLQiilA~eR~~~~~pd~l~~Lr~eIl~VI~K 52 (88)
T COG0851 1 MSLFDFFFSRKKNSAET-------AKERLQLILAHERAAGLQPDYLEQLRKEILEVISK 52 (88)
T ss_pred CcHHHHHHhcCCCcHHH-------HHHHHHHhhhhhhhcCCCcchHHHHHHHHHHHHHH
Confidence 78999988776 33333 445555532 222 23567888888665543
No 18
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=35.52 E-value=77 Score=31.18 Aligned_cols=86 Identities=10% Similarity=0.139 Sum_probs=68.8
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 013794 10 KLSIFLFFKKFNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELF 89 (436)
Q Consensus 10 ~~~~~lf~~~f~~sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLEly 89 (436)
++||...-+.|....-+-..+..+-||.++..+-..+-..+...=.++|..|+.+-=..==+||..+|.-+.=|+-|-.+
T Consensus 31 ~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m~~~i~~~n~fl~~~~~~~~~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ 110 (205)
T PF12238_consen 31 SLFDETVLSNLSGQSDEEKFKSLFDSVPLMKHKISHMNAFLNDWPPHMLEEGREKMTKYYKKHIYKEDSEVKDYNGLVKF 110 (205)
T ss_pred hhhhHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhccHHHHHHHHHHhccCcccccccHHHHHHH
Confidence 35666666777777788888999999999999999999999977788988887765555668888898888667777778
Q ss_pred HHHHHH
Q 013794 90 CELIVA 95 (436)
Q Consensus 90 CElLla 95 (436)
|.-.+.
T Consensus 111 ck~Fl~ 116 (205)
T PF12238_consen 111 CKDFLD 116 (205)
T ss_pred HHHHhc
Confidence 876643
No 19
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=34.15 E-value=92 Score=26.11 Aligned_cols=46 Identities=26% Similarity=0.422 Sum_probs=26.7
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHhc
Q 013794 9 MKLSIFLFFKKFNSSKCKTAAKMAVARIKLLR-NKR----EAVVRQMRRDIALLLQS 60 (436)
Q Consensus 9 ~~~~~~lf~~~f~~sKcKt~LKLAisRLklLq-nKr----~a~~kq~RrDIAqLL~~ 60 (436)
|+||+-||+++= +.-..|-.||+++- ..| -....++|+||.+.+..
T Consensus 1 M~l~~~f~~~k~------~Sa~~AKeRLq~iL~~dR~~~~p~~l~~mk~dil~VIsk 51 (81)
T TIGR01215 1 MSLLEFFKSRKK------NSAEVAKDRLKLILAHDRAQLAPEYLEELRKEILEVISK 51 (81)
T ss_pred CchHHHhhcCCC------CcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 788988877531 13344666666643 222 24556777777666554
No 20
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=33.59 E-value=1.3e+02 Score=25.95 Aligned_cols=114 Identities=22% Similarity=0.362 Sum_probs=57.7
Q ss_pred HHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCC-C--CchhHHHHHHHHHHHHc------HHHHHHHhhcCCCCCCCHHH
Q 013794 92 LIVARLSIIAKRRECPADLKEGIASVIFAAPRC-S--EIPELGAIRDIFEKKYG------KDFVSAATDLRPNSGVNRML 162 (436)
Q Consensus 92 lLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~-s--DlPEL~~IR~~f~~KYG------keFv~aa~elr~~~~VN~kI 162 (436)
++....+-.......+.. ..++..|++...++ | +-.|+..|+.+|...+| .+....+.+......=-..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 83 (140)
T PF05099_consen 5 LFKSSLQQQFKRLRQPQE-REALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEEL 83 (140)
T ss_dssp ----HHHHHHTTT--STT-HHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHH
T ss_pred chhhhccccccccCCchH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 333444444444444444 88887777776666 3 56699999999999999 33333232221111111346
Q ss_pred HhhcCCCCCC--HHHHHHHHHHHHHHcCCCCCCchhHHHhcCchhhhcC
Q 013794 163 IEKLSVRTPT--GEVKLKVMKEIAKEFQIDWDTTESEMELLKPAEERIG 209 (436)
Q Consensus 163 v~KLSv~~Ps--~elv~kyL~EIAkEy~I~w~p~~~e~~l~~~~e~~l~ 209 (436)
+..|....+. ...++..|..||..-| ...+.|.+++..--..++
T Consensus 84 ~~~l~~~~~~~~r~~ll~~l~~ia~ADG---~~~~~E~~~l~~ia~~L~ 129 (140)
T PF05099_consen 84 LRELRDSLSPEEREDLLRMLIAIAYADG---EISPEEQEFLRRIAEALG 129 (140)
T ss_dssp HHHHCTS--HHHHHHHHHHHHHHCTCTT---C-SCCHHHHHHHHHHHCT
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHcC
Confidence 6666664332 2335556677777655 333345555554444444
No 21
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=30.45 E-value=1.9e+02 Score=30.13 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHH
Q 013794 83 NEFIELFCELIVARLSIIAKRRECPADLKEGIAS 116 (436)
Q Consensus 83 yEiLElyCElLlaRl~lIe~~kecP~eLkEAVsS 116 (436)
.+.|..||+.+.. .++.....||.+|++....
T Consensus 130 ~~~L~~~~~~~~~--~I~~S~~~~P~~lr~i~~~ 161 (313)
T cd05394 130 KENLRYYVDKVFF--CIVKSSMSCPTVMCDIFYS 161 (313)
T ss_pred HHHHHHHHHHHHH--HHHhCcccCcHHHHHHHHH
Confidence 3556667776655 3456666788877765443
No 22
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.42 E-value=6.6e+02 Score=27.00 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHhcCc---hhhhhHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHhh
Q 013794 45 AVVRQMRRDIALLLQSKQ---DATARIRVEHVIREQNVLAANE-FIELFCELIVARLSIIAKRRECPADLKEGIASVIFA 120 (436)
Q Consensus 45 a~~kq~RrDIAqLL~~Gk---~e~ArIRVE~lIrEd~~ieayE-iLElyCElLlaRl~lIe~~kecP~eLkEAVsSLIfA 120 (436)
.++.|.|.=.+..|.+.. .+-++.-+++++.+++.+-.-. ++.++| .+++ -.|+++...|++.+++
T Consensus 20 ~~~~qyr~~l~~~lt~~~~el~e~~k~~id~~~~~~vslvvsrqllsl~~----~~l~------~l~~e~~Kei~~~~l~ 89 (399)
T KOG1497|consen 20 DQAEQYRQLLAKVLTNNGMELLEALKRFIDAIVNENVSLVVSRQLLSLFD----VELS------ILEDELRKEISHFTLE 89 (399)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHH----HHhc------cCCHHHHHHHHHHHHH
Confidence 344555666666666654 3556667888888887544332 334444 3443 5688999999999988
Q ss_pred --CCCCCCch--hHHHHHHHHHHHHcHH--HHHHHhhcCCCCCCCHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 013794 121 --APRCSEIP--ELGAIRDIFEKKYGKD--FVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEF 187 (436)
Q Consensus 121 --ApR~sDlP--EL~~IR~~f~~KYGke--Fv~aa~elr~~~~VN~kIv~KLSv~~Ps~elv~kyL~EIAkEy 187 (436)
-||. .-+ -+..||-+|+.-|-++ |-.+|.-+- +|+..- ..+.-+.+-+..+-..||+-|
T Consensus 90 ~iq~rv-isfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~---~I~~~t----g~~~~d~~~kl~l~iriarly 154 (399)
T KOG1497|consen 90 KIQPRV-ISFEEQVASIRLHLASIYEKEQNWRDAAQVLV---GIPLDT----GQKAYDVEQKLLLCIRIARLY 154 (399)
T ss_pred hccccc-ccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh---ccCccc----chhhhhhHHHHHHHHHHHHHH
Confidence 6786 333 4678999999999884 555554331 222110 123344555556666777766
No 23
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=29.72 E-value=77 Score=26.94 Aligned_cols=46 Identities=26% Similarity=0.432 Sum_probs=26.9
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHhc
Q 013794 9 MKLSIFLFFKKFNSSKCKTAAKMAVARIKLLRN-KR-----EAVVRQMRRDIALLLQS 60 (436)
Q Consensus 9 ~~~~~~lf~~~f~~sKcKt~LKLAisRLklLqn-Kr-----~a~~kq~RrDIAqLL~~ 60 (436)
|+||+-|++++ ++.-..|-.||+++-- .| .....++|+||.+.+..
T Consensus 1 M~l~~~f~~kk------~~Sa~~AKeRLq~iL~~dR~~~~~p~~l~~lk~dIl~VIsK 52 (86)
T PRK00296 1 MSLLDFFRSRK------KSTANVAKERLQIIVAHERSSRGEPDYLPQLRKEILEVIAK 52 (86)
T ss_pred CchHHhhccCC------CCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 77888666543 2244556777776432 11 23567777777766654
No 24
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=29.36 E-value=38 Score=25.96 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCchhHHH---HHHHHHHHHcHHHHHH
Q 013794 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELGA---IRDIFEKKYGKDFVSA 148 (436)
Q Consensus 80 ieayEiLElyCElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlPEL~~---IR~~f~~KYGkeFv~a 148 (436)
.++|.-|-..++-+....+ +....-++.+....|+.. -|. ++.||.. +......+||.+|.+.
T Consensus 2 ~~~~~~L~~~R~~~A~~~~-~~~~~Il~~~~L~~ia~~---~P~--s~~~L~~i~g~~~~~~~~~g~~il~~ 67 (68)
T PF00570_consen 2 LALLKALKEWREELAREED-VPPYRILSDEALLEIAKR---LPT--SIEELLQIPGMGKRKVRKYGDEILEI 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-HHHHS-HHHHHHHHHH-----S--SHHHHHTSTTCGHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-cCcccccCHHHHHHHHHh---CCC--CHHHHHHccCCCHHHHHHHHHHHHhh
Confidence 3566777777777776665 333445666665555543 443 5566655 5678888999999763
No 25
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=28.90 E-value=85 Score=25.99 Aligned_cols=50 Identities=30% Similarity=0.506 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCCCC--CHHHHHHHHHHHHHHcCCCCCC
Q 013794 130 LGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTP--TGEVKLKVMKEIAKEFQIDWDT 193 (436)
Q Consensus 130 L~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~~P--s~elv~kyL~EIAkEy~I~w~p 193 (436)
|+.|-+.|..+|...|-. +++.|....| ..+....++.+|-...+|.|.-
T Consensus 1 L~~i~~~~e~~~~~~f~~--------------~~~~l~~~~~~~~~~~f~~v~~~lf~d~~inWGR 52 (101)
T PF00452_consen 1 LRRIADELERKYEDFFEN--------------MLNQLNINTPDNAYETFNEVAEELFEDGGINWGR 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHCSSSTTTHHHHHHHHHHHHTTTSSTCHHH
T ss_pred CHHHHHHHHHHHHHHHHH--------------HHHHhCCCCcchHHHHHHHHHHHHhccCCCCHHH
Confidence 678889999999999854 4555555444 3455666677776667888853
No 26
>PF05928 Zea_mays_MuDR: Zea mays MURB-like protein (MuDR); InterPro: IPR009227 This family consists of several Zea mays (Maize) specific MURB-like proteins. The transposition of Mu elements underlying Mutator activity in maize requires a transcriptionally active MuDR element. Despite variation in MuDR copy number and RNA levels in Mutator lines, transposition events are consistently late in plant development, and Mu excision frequencies are similar [].
Probab=27.85 E-value=61 Score=31.19 Aligned_cols=29 Identities=38% Similarity=0.359 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHHHHHHHHH-------HHHHHHHh
Q 013794 251 FEDTASAAEAAADSAKKAVAA-------AQAAAYLA 279 (436)
Q Consensus 251 ~~D~~~AA~AA~eSA~~Aa~A-------ArAA~eLs 279 (436)
-.|+-+||+||+-.|+.|.-| ||||++++
T Consensus 9 ia~~v~aaraaavaa~earc~~~vaekea~a~v~fa 44 (207)
T PF05928_consen 9 IADVVDAARAAAVAASEARCVVFVAEKEARAGVRFA 44 (207)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Confidence 467888999888877776655 45555544
No 27
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=26.46 E-value=1.8e+02 Score=23.34 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=32.6
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013794 52 RDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIV 94 (436)
Q Consensus 52 rDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLl 94 (436)
++|.+.+.+|....++..++.++.+ =+.+.+||...-+.|.
T Consensus 9 ~~i~~~~~~~~~~~~~~~~~~l~~~--G~s~~~Il~~l~~~l~ 49 (89)
T PF08542_consen 9 EEILESCLNGDFKEARKKLYELLVE--GYSASDILKQLHEVLV 49 (89)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT--T--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 4778888889999999999999998 6678888887766664
No 28
>PLN02976 amine oxidase
Probab=23.86 E-value=1.6e+03 Score=29.05 Aligned_cols=196 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHhhhhhcC
Q 013794 29 AKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFC----ELIVARLSIIAKRR 104 (436)
Q Consensus 29 LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyC----ElLlaRl~lIe~~k 104 (436)
+|-+..|+.+.+.- ...-...+++.| ++.+-...---++++....+-.-=+-..|++.| +|+.-|++-|-+.
T Consensus 1253 ~~t~~gr~~~~~~~-~~~~~~~~~~~a--~~~~gl~~l~~w~~~~~~~~~~~l~~~~~~ll~~~~~d~~a~r~sg~~~~- 1328 (1713)
T PLN02976 1253 AKTTAGRLHLAKEL-LNLPVETLKSFA--GTKEGLATLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKT- 1328 (1713)
T ss_pred hcccccHHHHHHHH-HhCCHHHHHHHh--cccchHHHHHHHHHHHhcccHHHHHHHHHHHHhhcchhHHHHHhccchHH-
Q ss_pred CCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCCCCCHHHHHHHHHHHH
Q 013794 105 ECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIA 184 (436)
Q Consensus 105 ecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~~Ps~elv~kyL~EIA 184 (436)
++|=|+. ...+|++.|-.|+..+|=.-|..+-..|- --||.-..|..+.-..
T Consensus 1329 -----~k~~~~~--------h~~~~~r~~a~~~~~~w~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~------ 1380 (1713)
T PLN02976 1329 -----VKEKVCV--------HTSRDIRAIASQLVSVWLEVFRREKASNG---------GLKLLRQATANESSKR------ 1380 (1713)
T ss_pred -----HHhhhhh--------cccHHHHHHHHHHHHHHHHHHHHhhhccc---------chhhhhhccccccccc------
Q ss_pred HHcCCCCCCchhHHHhcCchhhhcCCCCccccCCCCccccCCCccccCCCCCCcccccccCCCCcccccHHHHHHHHHHH
Q 013794 185 KEFQIDWDTTESEMELLKPAEERIGGPDTFFSASSLPVKHVPVQSVEQNRPHTRSVVSNRERGTMQFEDTASAAEAAADS 264 (436)
Q Consensus 185 kEy~I~w~p~~~e~~l~~~~e~~l~~~~~~~s~ss~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~D~~~AA~AA~eS 264 (436)
.+........-....+...+....+.........-..-.. ......-...-+.||-||+|.
T Consensus 1381 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 1441 (1713)
T PLN02976 1381 ----------------RKLNSPSTDTKGKLSSLENVKTDKSKSESLKSVGRQDIEE---EEGNQIPMSEEEKAAFAAAEA 1441 (1713)
T ss_pred ----------------cccccccccccCcccccccccccccccccchhhhhccccc---cccCCCccCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 013794 265 AKKAVAAAQAA 275 (436)
Q Consensus 265 A~~Aa~AArAA 275 (436)
|.-||.||-.|
T Consensus 1442 ~~~~~~~~~~~ 1452 (1713)
T PLN02976 1442 ARAAAEAAAQA 1452 (1713)
T ss_pred HHHHHHHHHHH
No 29
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=23.82 E-value=3.4e+02 Score=29.05 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHH
Q 013794 79 VLAANEFIELFCELIVARLSIIAKRRECPADLKEGIAS 116 (436)
Q Consensus 79 ~ieayEiLElyCElLlaRl~lIe~~kecP~eLkEAVsS 116 (436)
+-+=.+.|..||+.++.+ ++.....||.+|+.-...
T Consensus 194 l~~n~~~L~~~~~~~~~~--I~~S~~~~P~~lR~i~~~ 229 (395)
T cd05137 194 IEHNWERLISLTEEIWKR--IANTSNDLPQEIRHILKY 229 (395)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHH
Confidence 334446677777777775 456677999999886554
No 30
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.16 E-value=5.5e+02 Score=25.71 Aligned_cols=105 Identities=19% Similarity=0.205 Sum_probs=59.0
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhc----CchhhhhHHH
Q 013794 8 TMKLSIFLFFKKFNSSKCKTAAKMAVARIKLLRNKREAVVRQM-------------RRDIALLLQS----KQDATARIRV 70 (436)
Q Consensus 8 ~~~~~~~lf~~~f~~sKcKt~LKLAisRLklLqnKr~a~~kq~-------------RrDIAqLL~~----Gk~e~ArIRV 70 (436)
+|+-.+++|..--+-..+...|..|+..++-+|++-...-... |.-+-+|+.. ...-.+..++
T Consensus 55 I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l 134 (291)
T PF10475_consen 55 ISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRL 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444456667777777777666665543332221 1122222222 3345677888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHH
Q 013794 71 EHVIREQNVLAANEFIELFCELIVARLSIIAKRRECPADLKEG 113 (436)
Q Consensus 71 E~lIrEd~~ieayEiLElyCElLlaRl~lIe~~kecP~eLkEA 113 (436)
+.++.+.++..|+++|...=+++ ..+.-+..-+.++..|.+-
T Consensus 135 ~~ll~~~dy~~Al~li~~~~~~l-~~l~~~~c~~~L~~~L~e~ 176 (291)
T PF10475_consen 135 QELLEEGDYPGALDLIEECQQLL-EELKGYSCVRHLSSQLQET 176 (291)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH-HhcccchHHHHHhHHHHHH
Confidence 99999999999999888766655 4444443333444444433
No 31
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=21.15 E-value=3.5e+02 Score=20.07 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHHHh
Q 013794 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSAAT 150 (436)
Q Consensus 89 yCElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGkeFv~aa~ 150 (436)
.|..++..+.-+-....-...+.+++..+..-.| +.+..+...|..+|+.++.....
T Consensus 5 ~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~-----~~~~~~C~~~v~~~~~~ii~~i~ 61 (76)
T smart00741 5 LCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP-----KSLSDQCKEFVDQYGPEIIDLLE 61 (76)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666555544333223455555555544322 48899999999999998887654
No 32
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=20.96 E-value=2.1e+02 Score=24.99 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=29.0
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHhc
Q 013794 8 TMKLSIFLFFKKFNSSKCKTAAKMAVARIKLL-RNKR----EAVVRQMRRDIALLLQS 60 (436)
Q Consensus 8 ~~~~~~~lf~~~f~~sKcKt~LKLAisRLklL-qnKr----~a~~kq~RrDIAqLL~~ 60 (436)
+|.||+.||+++= ..-..|-.||+++ -.-| -....++|+||.+.+..
T Consensus 3 ~~~~l~~lf~~k~------~Sa~~AK~RLk~iL~~dR~~~sp~~l~~mk~dIl~VIsk 54 (97)
T PRK13988 3 LRDLLEKLFGRQP------ASASTARERLQLVLAHDRADLSPELLEQMRKEILEVVAR 54 (97)
T ss_pred HHHHHHHHhcCCC------CcHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 5788888887522 1334466666663 2233 35677888888776654
No 33
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=20.92 E-value=1.1e+03 Score=28.58 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHH-----------hhCCCCCCchhHH----HHHHHHHHHHcHHHHHH
Q 013794 84 EFIELFCELIVARLSIIAKRRECPADLKEGIASVI-----------FAAPRCSEIPELG----AIRDIFEKKYGKDFVSA 148 (436)
Q Consensus 84 EiLElyCElLlaRl~lIe~~kecP~eLkEAVsSLI-----------fAApR~sDlPEL~----~IR~~f~~KYGkeFv~a 148 (436)
-++++-.++|--++.+|+.-++.|.=---||+-|+ ||.....|..-|. .-|.+|+.||-|-|..+
T Consensus 467 allel~ieale~hmdiieairdaP~lYclaVsEiVRRklfike~eEWaga~skd~aqf~eaEekkREqfGk~fkKhFLha 546 (1424)
T KOG4572|consen 467 ALLELKIEALEIHMDIIEAIRDAPILYCLAVSEIVRRKLFIKELEEWAGAHSKDCAQFSEAEEKKREQFGKKFKKHFLHA 546 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34556667776777888777777766556666554 6655544444443 46899999999999876
Q ss_pred H----hhcCCCCCCCHHHHhhcCCCCCCHH
Q 013794 149 A----TDLRPNSGVNRMLIEKLSVRTPTGE 174 (436)
Q Consensus 149 a----~elr~~~~VN~kIv~KLSv~~Ps~e 174 (436)
- .++.|..++-.+ .+|.....|.-.
T Consensus 547 ~ff~gfDn~P~~fckak-~eKfDcdLPdIa 575 (1424)
T KOG4572|consen 547 LFFGGFDNLPEFFCKAK-LEKFDCDLPDIA 575 (1424)
T ss_pred hhhcccccCCHHHhcCC-hhhcCCCCchhh
Confidence 3 244444333332 455666666533
No 34
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=20.54 E-value=2.9e+02 Score=22.76 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhhh--cCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 013794 87 ELFCELIVARLSIIAK--RRECPADLKEGIASVIFAAPRCSEIPELGAIRDI 136 (436)
Q Consensus 87 ElyCElLlaRl~lIe~--~kecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~ 136 (436)
..|||++-.+...|-+ +.-+|.-+-.+|-+|=.-|.- .+||+ .+|++
T Consensus 2 ~~YCeliR~~ya~IgSGd~gYiP~Ai~calk~Ln~iAad-~~Lp~--~vRE~ 50 (66)
T PF06786_consen 2 QVYCELIRELYAQIGSGDQGYIPDAIGCALKTLNDIAAD-EALPE--DVREQ 50 (66)
T ss_pred cHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHcc-cccCH--HHHHH
Confidence 4689999999999986 457899999999998776665 37775 34443
No 35
>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.03 E-value=2e+02 Score=26.87 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=43.0
Q ss_pred CCChhHHHHHHHHHhhCCCCCCchhHHHHHHHH-----------HHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCC
Q 013794 105 ECPADLKEGIASVIFAAPRCSEIPELGAIRDIF-----------EKKYGKDFVSAATDLRPNSGVNRMLIEKLSVR 169 (436)
Q Consensus 105 ecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f-----------~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~ 169 (436)
.+|+++++-+.-.+-...++ ..-+|..+.+.+ ..|||+.|.......+.-.-+-..+++.+...
T Consensus 9 ~LP~eir~~l~~~L~~~~~t-~~ei~~~~~~~~~~~g~~iSrSav~RY~~~~~~~~~~lr~are~a~al~~~~~~~ 83 (180)
T PF11985_consen 9 LLPPEIREWLDQMLRDGGFT-QYEILAEWLEELAEEGYDISRSAVHRYAQRFEEVLERLREAREIAEALAEELGDE 83 (180)
T ss_pred hCCHHHHHHHHHHHHhCCCC-hHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999988877764 555666777776 34899988766544432222334466666654
Done!