Query 013794
Match_columns 436
No_of_seqs 173 out of 311
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frr_A Uncharacterized protein 100.0 5.2E-66 1.8E-70 481.6 22.5 182 15-197 3-185 (191)
2 3ggy_A Increased sodium tolera 100.0 3.5E-61 1.2E-65 449.7 19.9 174 18-194 6-187 (193)
3 2gd5_A Charged multivesicular 89.8 2 6.8E-05 38.8 10.0 120 23-147 13-132 (179)
4 3frt_A Charged multivesicular 87.1 9.2 0.00031 36.1 13.0 120 23-147 13-132 (218)
5 1t98_A KICB protein, chromosom 76.4 20 0.0007 34.9 11.0 79 23-102 158-238 (287)
6 1l9l_A Granulysin; saposin fol 68.8 16 0.00053 28.7 6.9 64 89-164 6-70 (74)
7 3jyw_M 60S ribosomal protein L 66.0 4.5 0.00015 37.3 3.7 24 250-273 142-165 (178)
8 3euh_A Protein KICB, chromosom 62.0 32 0.0011 35.6 9.4 80 23-103 158-239 (440)
9 2gtg_A Proactivator polypeptid 54.4 57 0.0019 25.0 7.8 65 89-164 9-74 (83)
10 1nkl_A NK-lysin; saposin fold, 45.0 37 0.0013 26.3 5.3 66 89-165 6-71 (78)
11 3bqp_A Proactivator polypeptid 43.5 71 0.0024 23.9 6.7 65 89-164 7-72 (80)
12 3cay_A LPD-12; alpha helix, ac 40.3 29 0.001 22.5 3.2 19 258-276 4-22 (27)
13 2xze_A STAM-binding protein; h 34.6 1.2E+02 0.0042 26.5 7.6 74 70-148 47-121 (146)
14 1n69_A Saposin B; lipid bindin 29.8 1.6E+02 0.0055 22.6 6.8 55 88-148 7-63 (81)
15 2qyp_A Proactivator polypeptid 29.6 30 0.001 27.3 2.5 67 88-165 9-76 (91)
16 1of9_A Pore-forming peptide am 29.0 1.7E+02 0.0058 22.4 6.8 64 89-164 7-71 (77)
17 3h8k_B Autocrine motility fact 27.3 73 0.0025 21.2 3.6 23 32-54 3-25 (28)
18 3us6_A Histidine-containing ph 23.1 1.5E+02 0.0052 25.8 6.1 56 48-103 4-63 (153)
19 2vxg_A LD41624, GE-1, CG6181-P 23.1 47 0.0016 29.2 2.8 38 50-94 3-40 (139)
20 3eab_G CHMP1B; spastin, MIT, E 23.0 28 0.00097 25.7 1.1 15 178-192 4-18 (50)
21 3s0r_A De novo designed helica 22.9 1.2E+02 0.0041 20.1 3.9 24 253-276 5-28 (30)
22 1ais_B TFB TFIIB, protein (tra 20.3 60 0.0021 28.7 2.9 62 75-136 5-78 (200)
No 1
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=100.00 E-value=5.2e-66 Score=481.56 Aligned_cols=182 Identities=32% Similarity=0.568 Sum_probs=177.7
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013794 15 LFFKKFNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIV 94 (436)
Q Consensus 15 lf~~~f~~sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLl 94 (436)
||+++||++|||++||||++||+++|+||+++++++|||||+||++|++++|||||||||+||+++++|||||+|||+|+
T Consensus 3 mf~~~~~~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~ 82 (191)
T 3frr_A 3 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLL 82 (191)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCChhHHHHHHHHHhhCCCC-CCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCCCCCH
Q 013794 95 ARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTG 173 (436)
Q Consensus 95 aRl~lIe~~kecP~eLkEAVsSLIfAApR~-sDlPEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~~Ps~ 173 (436)
+|+++|+++++||+||+|||+||||||||| +|||||.+||++|+.|||++|+.+|++|++++ ||++|++||++.+|+.
T Consensus 83 ~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~-Vn~~iv~kLs~~~P~~ 161 (191)
T 3frr_A 83 ARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGT-VNDRLMHKLSVEAPPK 161 (191)
T ss_dssp HTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSC-SCHHHHHHTCCSCCCH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCC-cCHHHHHHcCCCCcCH
Confidence 999999999999999999999999999998 89999999999999999999999999999765 9999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhH
Q 013794 174 EVKLKVMKEIAKEFQIDWDTTESE 197 (436)
Q Consensus 174 elv~kyL~EIAkEy~I~w~p~~~e 197 (436)
++|++||+|||++|||+|+|+++-
T Consensus 162 ~lv~~yL~EIA~~y~V~w~p~~~~ 185 (191)
T 3frr_A 162 ILVERYLIEIAKNYNVPYEPDSVV 185 (191)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCchhh
Confidence 999999999999999999998653
No 2
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=100.00 E-value=3.5e-61 Score=449.70 Aligned_cols=174 Identities=30% Similarity=0.493 Sum_probs=168.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 013794 18 KKFNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARL 97 (436)
Q Consensus 18 ~~f~~sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLlaRl 97 (436)
.+| .+|||++||||++||+++|+||+++++++|||||+||++|++++|||||||||+||+++++|||||+|||+|++|+
T Consensus 6 ~~~-~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~ 84 (193)
T 3ggy_A 6 IPF-TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARV 84 (193)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 4999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh--------cCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCC
Q 013794 98 SIIAK--------RRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVR 169 (436)
Q Consensus 98 ~lIe~--------~kecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~KLSv~ 169 (436)
++|++ +++||+||+|||+|||||||||+|||||.+||++|+.|||++|+.+|++|. ++||++||+||++.
T Consensus 85 ~ll~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~--~gVn~kiv~kLs~~ 162 (193)
T 3ggy_A 85 QVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADH--IDVPEKIIKKCSPS 162 (193)
T ss_dssp HHHTTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHC--TTCCHHHHHHHSCC
T ss_pred HHHHhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcC--CCCCHHHHHHcCCC
Confidence 99999 699999999999999999999999999999999999999999999999995 56999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCc
Q 013794 170 TPTGEVKLKVMKEIAKEFQIDWDTT 194 (436)
Q Consensus 170 ~Ps~elv~kyL~EIAkEy~I~w~p~ 194 (436)
+|+.++|.+||+|||++|||+|++-
T Consensus 163 ~P~~elv~~yL~EIA~ey~V~w~~~ 187 (193)
T 3ggy_A 163 VPKEELVDLYLKEIAKTYDVPYSKL 187 (193)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999999864
No 3
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=89.81 E-value=2 Score=38.83 Aligned_cols=120 Identities=10% Similarity=0.115 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 013794 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARLSIIAK 102 (436)
Q Consensus 23 sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLlaRl~lIe~ 102 (436)
-+++..|+-++..|.--.+|-+..-++...+|-+..+.|+.+.|+|.+..+|+--+...=|--+-.-.+-+..|+..+..
T Consensus 13 r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~ 92 (179)
T 2gd5_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA 92 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999998999999999999999999999999999999999999888744333333333444444333332
Q ss_pred cCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHH
Q 013794 103 RRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVS 147 (436)
Q Consensus 103 ~kecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGkeFv~ 147 (436)
....-..++.+ +-++=+.-+.-++|++..+=.-|. ++|..
T Consensus 93 ~~~v~~am~~~-~~~M~~~n~~m~l~~i~~~M~e~~----~e~~~ 132 (179)
T 2gd5_A 93 VLRVAGSLQKS-TEVMKAMQSLVKIPEIQATMRELS----KEMMK 132 (179)
T ss_dssp HHHHTSSCCCC-SHHHHTTTSSTTSSSCCHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHH----HHHHH
Confidence 22111111111 122333334348888876655554 55544
No 4
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=87.12 E-value=9.2 Score=36.14 Aligned_cols=120 Identities=10% Similarity=0.112 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 013794 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARLSIIAK 102 (436)
Q Consensus 23 sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLlaRl~lIe~ 102 (436)
-+|+..|+-++--|.--.++-+..-++...+|-+..+.|+.+.|||=+..|||--+...=|--+---.+-+.-|+...-.
T Consensus 13 r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s 92 (218)
T 3frt_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA 92 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999988777777777777777766665
Q ss_pred cCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHH
Q 013794 103 RRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVS 147 (436)
Q Consensus 103 ~kecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGkeFv~ 147 (436)
...+-..+..++ .++=..-+.-++|+|..+=.-| .++|..
T Consensus 93 ~~~v~~sM~~st-~~M~~~n~~m~l~~i~~tM~ef----ekE~~k 132 (218)
T 3frt_A 93 VLRVAGSLQKST-EVMKAMQSLVKIPEIQATMREL----SKEMMK 132 (218)
T ss_dssp CC----CCCCCH-HHHHHHHHSTTSHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHH----HHHHHH
Confidence 544443333322 2333333444899988765555 466655
No 5
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=76.43 E-value=20 Score=34.93 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHhhh
Q 013794 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIRE--QNVLAANEFIELFCELIVARLSII 100 (436)
Q Consensus 23 sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrE--d~~ieayEiLElyCElLlaRl~lI 100 (436)
.-+|-.+--...+|.+-|+-..++..+.+.|||.||.+. .-.|-..+|+|+.| ..+-|+-|.|+---+-|.+.+--|
T Consensus 158 apLkySVaeifd~IDl~QR~mDeQQ~~Vk~~IA~LL~qD-W~~AI~~CE~LL~eTs~tLRELqDtL~aagd~lqa~Ll~I 236 (287)
T 1t98_A 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKD-WRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 236 (287)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeeHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 457777777889999999999999999999999999987 66799999999997 467899999999999988887777
Q ss_pred hh
Q 013794 101 AK 102 (436)
Q Consensus 101 e~ 102 (436)
+.
T Consensus 237 Q~ 238 (287)
T 1t98_A 237 QD 238 (287)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 6
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=68.77 E-value=16 Score=28.75 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCchh-HHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHh
Q 013794 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPE-LGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIE 164 (436)
Q Consensus 89 yCElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlPE-L~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~ 164 (436)
.|++++..+.-+- ...=-.++++++..+ |+-+|- |....+.|+.+||...+..-+. ..+|+.|.
T Consensus 6 ~C~~~v~~le~~l-~n~Te~~I~~~L~~v------C~~l~~~~~~~C~~~V~~y~~~Ii~~L~~-----~~~P~~IC 70 (74)
T 1l9l_A 6 TCLTIVQKLKKMV-DKPTQRSVSNAATRV------CRTGRSRWRDVCRNFMRRYQSRVIQGLVA-----GETAQQIC 70 (74)
T ss_dssp HHHHHHHHHHHHC-SSCCHHHHHHHHHHG------GGSSCHHHHHHHHHHHHHHHHHHHHHHHT-----TCCHHHHH
T ss_pred HHHHHHHHHHHHh-cccCHHHHHHHHHHH------HHhCChHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHH
Confidence 5888888887655 444455666666554 467787 9999999999999999876543 46676654
No 7
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=65.96 E-value=4.5 Score=37.34 Aligned_cols=24 Identities=46% Similarity=0.375 Sum_probs=16.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Q 013794 250 QFEDTASAAEAAADSAKKAVAAAQ 273 (436)
Q Consensus 250 ~~~D~~~AA~AA~eSA~~Aa~AAr 273 (436)
+|.|+.+||.||+..|+-|++||-
T Consensus 142 k~~~~~~~~~~~~~~~~~~~~~~~ 165 (178)
T 3jyw_M 142 KAAAAAAAAAAAAAAAAAAAAAAA 165 (178)
T ss_dssp CCHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 899998888777666555444433
No 8
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=61.98 E-value=32 Score=35.60 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhhh
Q 013794 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQ--NVLAANEFIELFCELIVARLSII 100 (436)
Q Consensus 23 sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ArIRVE~lIrEd--~~ieayEiLElyCElLlaRl~lI 100 (436)
.-+|-.++-...+|.+-|+--.++..+.|.|||.||.+. ...|-..+|+++.|- .+-|+-+.|+.=-+-|.+.+-.|
T Consensus 158 ~~LkySVaeifd~Idl~QR~mDeQQ~~vk~eIA~LL~~d-W~~AI~~Ce~LL~Ets~tLRELqdtL~aagD~lq~qLl~I 236 (440)
T 3euh_A 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKD-WRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 236 (440)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 458888999999999999999999999999999999987 666999999999974 67788889999999998888888
Q ss_pred hhc
Q 013794 101 AKR 103 (436)
Q Consensus 101 e~~ 103 (436)
+..
T Consensus 237 Q~~ 239 (440)
T 3euh_A 237 QDA 239 (440)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 9
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=54.42 E-value=57 Score=24.98 Aligned_cols=65 Identities=18% Similarity=0.430 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCchh-HHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHh
Q 013794 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPE-LGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIE 164 (436)
Q Consensus 89 yCElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlPE-L~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~ 164 (436)
.|++++..+.-+-....--.++.+++..+ |.-+|. +....+.|...||..++..-.. +++|..|-
T Consensus 9 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~------C~~lp~~~~~~C~~~V~~y~~~ii~~l~~-----~~~P~~iC 74 (83)
T 2gtg_A 9 VCEFLVKEVTKLIDNNKTEKEILDAFDKM------CSKLPKSLSEECQEVVDTYGSSILSILLE-----EVSPELVC 74 (83)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH------TTSSCHHHHHHHHHHHHHHHHHHHHHHHT-----TCCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHH------HHHCCCcchhHHHHHHHHHHHHHHHHHHH-----CCCHHHHH
Confidence 58888887776655444445566666553 456675 9999999999999999876432 45666554
No 10
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=45.05 E-value=37 Score=26.28 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhh
Q 013794 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEK 165 (436)
Q Consensus 89 yCElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~K 165 (436)
.|++++..+.-+-....--.+++.++..+. .-+|.|....+.|..+||...+..-.+ .++|+.|-+
T Consensus 6 ~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C------~~lp~~~~~C~~~V~~y~~~iI~~l~~-----~~~P~~IC~ 71 (78)
T 1nkl_A 6 SCRKIIQKLEDMVGPQPNEDTVTQAASQVC------DKLKILRGLCKKIMRSFLRRISWDILT-----GKKPQAICV 71 (78)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHH------HHSCSTHHHHHHHHHHHHHHHHHHHHT-----TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH------hhCchhHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHh
Confidence 477777777665555555566777766653 335668999999999999998876542 466765543
No 11
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=43.55 E-value=71 Score=23.90 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCch-hHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHh
Q 013794 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIP-ELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIE 164 (436)
Q Consensus 89 yCElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlP-EL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~ 164 (436)
.|+.++..+.-+-....--.++.+++..+.- -+| .+....+.|...||..++.... .+++|..|-
T Consensus 7 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~------~lp~~~~~~C~~~v~~y~~~ii~~l~-----~~~~P~~iC 72 (80)
T 3bqp_A 7 VCKKLVGYLDRNLEKNSTKQEILAALEKGCS------FLPDPYQKQCDQFVAEYEPVLIEILV-----EVMDPSFVC 72 (80)
T ss_dssp HHHHHHHHHHHHSCTTCCHHHHHHHHHHHGG------GSCGGGHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------hCCCccchhhHHHHHHHHHHHHHHHH-----HCCCHHHHH
Confidence 5788877777665544444556666655432 344 3899999999999999987653 246666553
No 12
>3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A*
Probab=40.34 E-value=29 Score=22.51 Aligned_cols=19 Identities=58% Similarity=0.515 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013794 258 AEAAADSAKKAVAAAQAAA 276 (436)
Q Consensus 258 A~AA~eSA~~Aa~AArAA~ 276 (436)
|+||-..|.+|+.||.-|+
T Consensus 4 aeaaekaakyaaeaaekaa 22 (27)
T 3cay_A 4 AEAAEKAAKYAAEAAEKAA 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666665544
No 13
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=34.62 E-value=1.2e+02 Score=26.45 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=50.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCC-hhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHH
Q 013794 70 VEHVIREQNVLAANEFIELFCELIVARLSIIAKRRECP-ADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSA 148 (436)
Q Consensus 70 VE~lIrEd~~ieayEiLElyCElLlaRl~lIe~~kecP-~eLkEAVsSLIfAApR~sDlPEL~~IR~~f~~KYGkeFv~a 148 (436)
++.-..+.+...||-++--||.|++..++-=-.-+.+. ++-+..+..|. .. -+++|-.|+..|..+|-+++..-
T Consensus 47 A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~~l~----~~-~~~~lE~LK~~L~~rY~~e~~~~ 121 (146)
T 2xze_A 47 ASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLK----EI-AFPKAEELKAELLKRYTKEYTEY 121 (146)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHHHHH----HT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHHHHH----HH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677778888899999977665422222222 45566666655 21 38999999999999999988653
No 14
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=29.81 E-value=1.6e+02 Score=22.57 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=36.0
Q ss_pred HHHHHHHHHHh-hhhhcCCCChhHHHHHHHHHhhCCCCCCch-hHHHHHHHHHHHHcHHHHHH
Q 013794 88 LFCELIVARLS-IIAKRRECPADLKEGIASVIFAAPRCSEIP-ELGAIRDIFEKKYGKDFVSA 148 (436)
Q Consensus 88 lyCElLlaRl~-lIe~~kecP~eLkEAVsSLIfAApR~sDlP-EL~~IR~~f~~KYGkeFv~a 148 (436)
..|++++..+. +|.+.+.--.++.+++-.+ |.-+| .+....+.|..+||..+...
T Consensus 7 ~~C~~~V~~ve~~l~~n~t~~~~I~~~l~~~------C~~lp~~~~~~C~~~V~~y~~~ii~~ 63 (81)
T 1n69_A 7 QDCIQMVTDIQTAVRTNSTFVQALVEHVKEE------CDRLGPGMADICKNYISQYSEIAIQM 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH------GGGGCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 35888888887 5544332114455554442 34555 69999999999999976653
No 15
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=29.58 E-value=30 Score=27.28 Aligned_cols=67 Identities=15% Similarity=0.316 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCchh-HHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhh
Q 013794 88 LFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPE-LGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEK 165 (436)
Q Consensus 88 lyCElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDlPE-L~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~K 165 (436)
..|++++..+.-+-....-..++.+++..+.- -+|. +....+.|...||..++....+ +++|+.|-.
T Consensus 9 ~~C~~vv~~i~~~l~~n~t~~~I~~~l~~~C~------~lp~~~~~~C~~~V~~y~~~ii~~l~~-----~~~P~~iC~ 76 (91)
T 2qyp_A 9 EVCEFLVKEVTKLIDNNKTEKEILDAFDKMCS------KLPKSLSEECQEVVDTYGSSILSILLE-----EVSPELVCS 76 (91)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH------TSCSSTTTTHHHHHHHHHHHHHHHHHH-----TCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH------HCCCCcccchHHHHHHHHHHHHHHHHH-----cCCHHHHHh
Confidence 35777777775544332223455555555433 3443 7888999999999999876543 356665543
No 16
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=28.96 E-value=1.7e+02 Score=22.44 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhhhcCCCChhHHHHHHHHHhhCCCCCCc-hhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHh
Q 013794 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEI-PELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIE 164 (436)
Q Consensus 89 yCElLlaRl~lIe~~kecP~eLkEAVsSLIfAApR~sDl-PEL~~IR~~f~~KYGkeFv~aa~elr~~~~VN~kIv~ 164 (436)
.|++++..+.-+-... --.+++.++..+. +-+ +.|....+.|..+||...+..-.+ .++|..|-
T Consensus 7 ~C~~vv~~ve~~l~~n-t~~~I~~~l~~~C------~~lp~~~~~~C~~~V~~y~~~iI~~l~~-----~~~P~~IC 71 (77)
T 1of9_A 7 LCTGLINTLENLLTTK-GADKVKDYISSLC------NKASGFIATLCTKVLDFGIDKLIQLIED-----KVDANAIC 71 (77)
T ss_dssp HHHHHHHHHHHHCSSS-CSHHHHHHHHHHH------TTCSSTTHHHHHHHHHHCHHHHHHHHHH-----TCCHHHHH
T ss_pred hHHHHHHHHHHHHHHC-cHHHHHHHHHHHH------HcCChHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHH
Confidence 4788888777665555 5566777777653 334 358999999999999998876543 35666554
No 17
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=27.28 E-value=73 Score=21.18 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013794 32 AVARIKLLRNKREAVVRQMRRDI 54 (436)
Q Consensus 32 AisRLklLqnKr~a~~kq~RrDI 54 (436)
+-.|-.+||++|..++.++|+-.
T Consensus 3 ~~eRq~~Lq~Rk~~mi~~ARrry 25 (28)
T 3h8k_B 3 ADERQRMLVQRKDELLQQARKRF 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999853
No 18
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=23.09 E-value=1.5e+02 Score=25.77 Aligned_cols=56 Identities=18% Similarity=0.095 Sum_probs=41.8
Q ss_pred HHHHHHHHHH----HhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhc
Q 013794 48 RQMRRDIALL----LQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARLSIIAKR 103 (436)
Q Consensus 48 kq~RrDIAqL----L~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLlaRl~lIe~~ 103 (436)
.++++.|+.+ ...|-.+...-+++.+..+++---+-++|++|++-.-.++..|...
T Consensus 4 ~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~a 63 (153)
T 3us6_A 4 GQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFA 63 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666554 5568777667788888666776677899999999998888888754
No 19
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=23.05 E-value=47 Score=29.18 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013794 50 MRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIV 94 (436)
Q Consensus 50 ~RrDIAqLL~~Gk~e~ArIRVE~lIrEd~~ieayEiLElyCElLl 94 (436)
.+.+|.+||+.|+++.|..++ |=..| .+++.-+|.-+-
T Consensus 3 ~~~~I~~Ll~~g~~eeAf~~a--L~ssd-----~~lv~~lc~~~d 40 (139)
T 2vxg_A 3 MGDSIKQLLMAGQINKAFHQA--LLAND-----LGLVEFTLRHTD 40 (139)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH--HHTTC-----HHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHH--HHhCc-----HHHHHHHHHcCC
Confidence 467799999999999999998 32222 126777776553
No 20
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=22.97 E-value=28 Score=25.67 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=7.8
Q ss_pred HHHHHHHHHcCCCCC
Q 013794 178 KVMKEIAKEFQIDWD 192 (436)
Q Consensus 178 kyL~EIAkEy~I~w~ 192 (436)
.+|.++|.|+||+..
T Consensus 4 ~Lm~qVaDE~Glel~ 18 (50)
T 3eab_G 4 MLLQEMADEAGLDLN 18 (50)
T ss_dssp HHHHHHHHHTTCC--
T ss_pred HHHHHHHHHhCchHH
Confidence 455666666666654
No 21
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=22.88 E-value=1.2e+02 Score=20.11 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 013794 253 DTASAAEAAADSAKKAVAAAQAAA 276 (436)
Q Consensus 253 D~~~AA~AA~eSA~~Aa~AArAA~ 276 (436)
.+.+-||-|.|-|.-|-.|||-|.
T Consensus 5 saleyaqqalekaqlalqaarqal 28 (30)
T 3s0r_A 5 SALEYAQQALEKAQLALQAARQAL 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355668888898988888888875
No 22
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=20.29 E-value=60 Score=28.65 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhh----------cCCCC-hhHHHHHHHHHhhCCCCCCch-hHHHHHHH
Q 013794 75 REQNVLAANEFIELFCELIVARLSIIAK----------RRECP-ADLKEGIASVIFAAPRCSEIP-ELGAIRDI 136 (436)
Q Consensus 75 rEd~~ieayEiLElyCElLlaRl~lIe~----------~kecP-~eLkEAVsSLIfAApR~sDlP-EL~~IR~~ 136 (436)
+|.++..+++.|..+|+.|--.-.+++. .+... -...--+++-||.|.|..+.| .|.+|-..
T Consensus 5 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~ 78 (200)
T 1ais_B 5 AERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI 78 (200)
T ss_dssp ---CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4667788888888888877422222221 11111 123344557788887763343 44444433
Done!