BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013795
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 143 VYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLE 180
VYC C +PY DV MI+C IC+DWFH +G+E
Sbjct: 38 VYCVCRQPY---DVNR--FMIECDICKDWFHGSCVGVE 70
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 143 VYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRD 188
VYC C +PY MI+C +C+DWFH +G+E + + D
Sbjct: 13 VYCLCRQPY-----NVNHFMIECGLCQDWFHGSCVGIEEENAVDID 53
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 143 VYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLE 180
VYC C PY DV MI+C +C+DWFH +G+E
Sbjct: 6 VYCLCRLPY---DVTRF--MIECDMCQDWFHGSCVGVE 38
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 143 VYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDD 189
VYC C PY DV MI+C C+DWFH +G+E +E P D
Sbjct: 11 VYCVCRLPY---DVTRF--MIECDACKDWFHGSCVGVE-EEEAPDID 51
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 143 VYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKA 202
+YC C +P+ MI C CE+WFH + +G+ + + G ED+IC
Sbjct: 17 LYCICRQPH------NNRFMICCDRCEEWFHGDCVGISEARGRLLERNG----EDYICPN 66
Query: 203 CSAV 206
C+ +
Sbjct: 67 CTIL 70
>pdb|1N7P|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292aF343V
Double Mutant
Length = 721
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 292 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 348
>pdb|1N7O|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase F343v Mutant
Length = 721
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 292 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 348
>pdb|1N7R|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase
W291a/w292a/f343v Mutant Complex With Hexasaccharide
Hyaluronan
Length = 721
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 292 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 348
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
pdb|1OJP|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With 6-sulphated Chondroitin
Disaccharide
pdb|1W3Y|A Chain A, Crystal Structure Of S. Pneumoniae Hyaluronate Lyase In
Complex With Palmitoyl-Vitamin C
pdb|2BRP|A Chain A, Crystal Structure Of S.Pneumoniae Hyaluronate Lyase In
Complex With W249b
pdb|2BRV|X Chain X, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 70percent Saturated Malonate.
pdb|2BRW|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme.
pdb|2BRW|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme
Length = 731
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 294 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 350
>pdb|1N7N|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292a Mutant
Length = 721
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 292 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 348
>pdb|1OJN|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
6-sulphated Chondroitin Disaccharide
Length = 731
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 294 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 350
>pdb|1OJM|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With Unsulphated Chondroitin
Disaccharide
Length = 729
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 292 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 348
>pdb|1N7Q|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W291aW292A
DOUBLE MUTANT Complex With Hyaluronan Hexasacchride
Length = 721
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 292 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 348
>pdb|1OJO|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
4-sulphated Chondroitin Disaccharide
Length = 731
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 294 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 350
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 376 GAELTFLNKLGHVEKMEILNG---IADMKD-EFHNFLQSFDPSKAITSDDVHQIFENL 429
G ++ N GHV +E+L G IADM + E LQS + + SD + +F+NL
Sbjct: 292 GRSISRANSEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKT-IVQSDSYYDVFKNL 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,215,660
Number of Sequences: 62578
Number of extensions: 629645
Number of successful extensions: 1071
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 25
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)