Query 013795
Match_columns 436
No_of_seqs 192 out of 667
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o70_A PHD finger protein 13; 99.5 1.8E-15 6.3E-20 119.4 1.9 62 129-206 6-67 (68)
2 1wep_A PHF8; structural genomi 99.5 2.9E-15 9.9E-20 121.1 0.4 70 132-214 2-73 (79)
3 1we9_A PHD finger family prote 99.4 8.6E-14 2.9E-18 107.8 1.8 56 139-207 3-59 (64)
4 3kqi_A GRC5, PHD finger protei 99.3 6.5E-14 2.2E-18 112.2 -2.1 57 137-206 5-61 (75)
5 1wem_A Death associated transc 99.3 1.3E-13 4.5E-18 110.4 -2.4 65 130-206 6-70 (76)
6 3o7a_A PHD finger protein 13 v 99.2 1.4E-12 4.7E-17 97.5 0.6 50 140-205 2-51 (52)
7 1wee_A PHD finger family prote 99.1 7.9E-12 2.7E-16 99.2 1.8 54 139-206 13-66 (72)
8 3lqh_A Histone-lysine N-methyl 99.1 4.1E-12 1.4E-16 118.1 -2.4 68 141-214 1-71 (183)
9 3kv5_D JMJC domain-containing 99.1 8.1E-12 2.8E-16 131.4 -2.4 62 132-206 27-88 (488)
10 2kgg_A Histone demethylase jar 99.0 2.2E-11 7.7E-16 90.9 -0.5 47 144-204 5-52 (52)
11 1wew_A DNA-binding family prot 98.9 1E-10 3.4E-15 94.3 0.6 56 141-206 15-72 (78)
12 2rsd_A E3 SUMO-protein ligase 98.9 2.4E-10 8.1E-15 89.8 2.3 54 141-205 9-64 (68)
13 3c6w_A P28ING5, inhibitor of g 98.9 2.5E-10 8.7E-15 87.6 0.1 48 141-206 8-58 (59)
14 3kv4_A PHD finger protein 8; e 98.9 6.2E-11 2.1E-15 123.5 -4.9 54 141-207 4-57 (447)
15 2g6q_A Inhibitor of growth pro 98.8 3.2E-10 1.1E-14 87.8 0.2 49 141-207 10-61 (62)
16 1wen_A Inhibitor of growth fam 98.8 1.1E-09 3.9E-14 86.9 3.0 49 141-207 15-66 (71)
17 1weu_A Inhibitor of growth fam 98.8 1.2E-09 4.2E-14 90.8 2.7 50 140-207 34-86 (91)
18 2ri7_A Nucleosome-remodeling f 98.8 1.6E-10 5.6E-15 105.2 -3.7 53 141-206 7-59 (174)
19 2vpb_A Hpygo1, pygopus homolog 98.8 8.9E-11 3.1E-15 91.8 -5.3 53 143-205 10-65 (65)
20 2k16_A Transcription initiatio 98.8 8.3E-10 2.8E-14 87.9 -0.2 52 140-206 16-68 (75)
21 2vnf_A ING 4, P29ING4, inhibit 98.8 9.5E-10 3.2E-14 84.6 0.0 48 141-206 9-59 (60)
22 2xb1_A Pygopus homolog 2, B-ce 98.7 4E-10 1.4E-14 95.9 -2.9 52 146-207 8-62 (105)
23 1x4i_A Inhibitor of growth pro 98.7 1.5E-09 5E-14 86.1 -0.5 48 141-206 5-55 (70)
24 2jmi_A Protein YNG1, ING1 homo 98.6 6.2E-09 2.1E-13 86.4 1.6 47 140-204 24-74 (90)
25 2lv9_A Histone-lysine N-methyl 98.6 1.6E-08 5.4E-13 84.9 3.5 50 142-207 28-77 (98)
26 3rsn_A SET1/ASH2 histone methy 98.5 9.8E-08 3.4E-12 88.1 4.6 67 139-215 2-69 (177)
27 3pur_A Lysine-specific demethy 98.3 1.1E-07 3.9E-12 100.3 2.0 40 159-206 55-94 (528)
28 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.9 1.2E-06 4.1E-11 74.9 -1.1 40 161-207 1-45 (140)
29 4bbq_A Lysine-specific demethy 97.7 7.9E-06 2.7E-10 69.6 0.9 45 159-208 72-116 (117)
30 1f62_A Transcription factor WS 97.3 6.1E-05 2.1E-09 55.2 1.5 46 146-206 5-50 (51)
31 2puy_A PHD finger protein 21A; 97.0 0.00017 5.6E-09 54.9 0.9 46 142-205 5-51 (60)
32 1mm2_A MI2-beta; PHD, zinc fin 96.7 0.0009 3.1E-08 51.1 3.3 48 142-207 9-57 (61)
33 2e6r_A Jumonji/ARID domain-con 96.7 0.00042 1.4E-08 57.3 1.5 50 142-206 16-66 (92)
34 3asl_A E3 ubiquitin-protein li 96.5 0.0013 4.6E-08 51.6 3.1 47 146-206 23-69 (70)
35 2yql_A PHD finger protein 21A; 96.5 0.0011 3.7E-08 49.6 2.1 46 142-205 9-55 (56)
36 2l5u_A Chromodomain-helicase-D 96.4 0.00092 3.1E-08 51.1 1.3 47 142-206 11-58 (61)
37 1xwh_A Autoimmune regulator; P 96.3 0.0013 4.3E-08 51.0 1.8 47 142-206 8-55 (66)
38 3ny3_A E3 ubiquitin-protein li 96.3 0.0023 8E-08 51.1 3.2 50 52-117 14-65 (75)
39 2l43_A N-teminal domain from h 96.1 0.0016 5.5E-08 53.4 1.3 54 143-211 27-82 (88)
40 2e6s_A E3 ubiquitin-protein li 96.0 0.005 1.7E-07 49.3 3.8 48 144-205 28-76 (77)
41 2ku3_A Bromodomain-containing 95.9 0.0012 4.3E-08 52.0 0.0 50 142-206 16-66 (71)
42 2yt5_A Metal-response element- 95.9 0.0026 8.8E-08 48.8 1.5 55 142-207 6-62 (66)
43 3u5n_A E3 ubiquitin-protein li 95.8 0.0039 1.3E-07 58.1 2.8 47 143-207 8-55 (207)
44 3o36_A Transcription intermedi 95.7 0.0046 1.6E-07 56.5 2.9 39 160-207 14-52 (184)
45 3shb_A E3 ubiquitin-protein li 95.7 0.0069 2.4E-07 48.5 3.4 39 159-205 38-76 (77)
46 2lri_C Autoimmune regulator; Z 95.6 0.0035 1.2E-07 48.8 1.3 38 160-206 22-59 (66)
47 4gne_A Histone-lysine N-methyl 95.4 0.0049 1.7E-07 52.4 1.7 44 142-204 15-60 (107)
48 3nis_A E3 ubiquitin-protein li 95.0 0.018 6.1E-07 46.8 3.6 49 52-116 18-70 (82)
49 2kwj_A Zinc finger protein DPF 94.7 0.011 3.8E-07 50.3 1.9 45 146-205 63-107 (114)
50 2ysm_A Myeloid/lymphoid or mix 94.7 0.011 3.8E-07 49.7 1.8 48 144-206 56-104 (111)
51 1fp0_A KAP-1 corepressor; PHD 94.4 0.043 1.5E-06 45.1 4.8 47 142-206 25-72 (88)
52 3ask_A E3 ubiquitin-protein li 94.4 0.021 7.1E-07 54.5 3.2 39 159-205 186-224 (226)
53 3v43_A Histone acetyltransfera 94.2 0.028 9.6E-07 47.5 3.4 47 146-206 66-112 (112)
54 1wev_A Riken cDNA 1110020M19; 94.2 0.011 3.6E-07 48.3 0.7 54 142-207 16-73 (88)
55 2ro1_A Transcription intermedi 92.6 0.056 1.9E-06 49.8 2.8 38 160-206 12-49 (189)
56 2ysm_A Myeloid/lymphoid or mix 86.6 0.46 1.6E-05 39.6 3.4 46 144-204 9-55 (111)
57 3v43_A Histone acetyltransfera 71.0 0.19 6.3E-06 42.4 -4.1 40 159-204 23-62 (112)
58 2kwj_A Zinc finger protein DPF 56.8 5.1 0.00018 33.6 2.2 22 159-180 20-41 (114)
59 1wil_A KIAA1045 protein; ring 49.4 10 0.00035 30.9 2.7 55 159-213 26-83 (89)
60 2l2l_B Methyl-CPG-binding doma 32.7 28 0.00096 23.9 2.4 19 416-434 6-24 (36)
61 2kmu_A ATP-dependent DNA helic 31.1 22 0.00074 26.7 1.8 31 397-427 6-38 (56)
62 2kd1_A DNA integration/recombi 30.5 43 0.0015 26.1 3.7 16 416-431 50-65 (118)
63 2ly8_A Budding yeast chaperone 28.4 34 0.0012 29.4 2.8 28 396-423 69-106 (121)
64 2kj5_A Phage integrase; GFT PS 28.2 56 0.0019 25.3 4.0 30 402-431 33-65 (116)
65 2kkv_A Integrase; protein stru 27.5 46 0.0016 26.3 3.4 31 401-431 32-65 (121)
66 2khv_A Phage integrase; soluti 24.7 89 0.003 24.1 4.6 17 415-431 45-61 (106)
67 2xzl_A ATP-dependent helicase 24.4 41 0.0014 37.1 3.3 59 142-212 14-86 (802)
68 2yvr_A Transcription intermedi 24.2 33 0.0011 23.9 1.6 24 55-82 18-41 (50)
69 2kj8_A Putative prophage CPS-5 24.1 80 0.0027 24.8 4.2 17 415-431 48-64 (118)
70 2kkp_A Phage integrase; SAM-li 23.6 60 0.0021 25.0 3.3 30 402-431 35-67 (117)
71 1e8j_A Rubredoxin; iron-sulfur 22.6 1.3E+02 0.0045 21.8 4.7 12 195-206 34-45 (52)
72 2wjy_A Regulator of nonsense t 21.8 44 0.0015 36.8 2.9 60 141-212 8-81 (800)
73 2lbm_A Transcriptional regulat 21.7 15 0.00053 32.3 -0.6 52 142-206 63-117 (142)
74 2j9w_A VPS28, VPS28-PROV prote 21.6 1.2E+02 0.0042 25.2 4.9 30 401-430 58-90 (102)
75 2kwq_A Protein MCM10 homolog; 21.4 47 0.0016 27.2 2.2 14 102-115 44-57 (92)
76 4rxn_A Rubredoxin; electron tr 21.1 35 0.0012 25.3 1.3 12 195-206 34-45 (54)
77 3nrw_A Phage integrase/site-sp 21.0 99 0.0034 24.4 4.2 51 381-431 16-68 (117)
78 1k9u_A Polcalcin PHL P 7; poll 20.7 58 0.002 23.4 2.5 39 390-428 22-66 (78)
No 1
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.52 E-value=1.8e-15 Score=119.44 Aligned_cols=62 Identities=24% Similarity=0.501 Sum_probs=46.0
Q ss_pred cccccccCCCCCcceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 129 VENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 129 ~~n~~N~Yn~Nf~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
.+++.|+|++++.++||+|+++|+ .++||||+.|++|||..|+|++.. . . .+.|+|+.|..+
T Consensus 6 ~~~~~~~~~~~~~~~~CiC~~~~~------~~~MIqCd~C~~WfH~~Cvgi~~~-~-----~----~~~~~C~~C~~s 67 (68)
T 3o70_A 6 HHSSGRENLYFQGLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS-N-----V----PEVFVCQKCRDS 67 (68)
T ss_dssp --------CTTTTCCCSTTCCCCT------TCCEEECTTTCCEEETTTTTCCTT-S-----C----CSSCCCHHHHTC
T ss_pred cCCcccccCCCCCceEeECCCcCC------CCCEEECCCCCccccccccCcCcc-c-----C----CCcEECCCCCCC
Confidence 467899999999999999999973 478999999999999999999643 1 1 368999999754
No 2
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.48 E-value=2.9e-15 Score=121.14 Aligned_cols=70 Identities=31% Similarity=0.780 Sum_probs=55.6
Q ss_pred ccccCCCCCcceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC--cc
Q 013795 132 AENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC--SF 209 (436)
Q Consensus 132 ~~N~Yn~Nf~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~--pf 209 (436)
+.-.|++|...+||+|++|| |+ .++||||+.|++|||..||+++.. ..+. ++.|+|+.|..+. ++
T Consensus 2 ~~~~~~~~~~~~~C~C~~~~-d~----~~~MIqCd~C~~WfH~~Cvgl~~~----~~~~----~~~~~C~~C~~~~~~~~ 68 (79)
T 1wep_A 2 SSGSSGMALVPVYCLCRQPY-NV----NHFMIECGLCQDWFHGSCVGIEEE----NAVD----IDIYHCPDCEAVFGPSI 68 (79)
T ss_dssp CSCCCCCCCCCCCSTTSCSC-CS----SSCEEEBTTTCCEEEHHHHTCCHH----HHTT----CSBBCCTTTTTTSCSCB
T ss_pred CCCccCccCCccEEEcCCcc-CC----CCceEEcCCCCCcEEeeecCcccc----cccC----CCeEECCCcccccCCCc
Confidence 34678999999999999998 33 489999999999999999999642 1222 5799999998763 56
Q ss_pred ccccc
Q 013795 210 LSTYP 214 (436)
Q Consensus 210 L~~y~ 214 (436)
+++..
T Consensus 69 ~K~~~ 73 (79)
T 1wep_A 69 MKNWH 73 (79)
T ss_dssp CCCCC
T ss_pred eeeec
Confidence 66554
No 3
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.37 E-value=8.6e-14 Score=107.84 Aligned_cols=56 Identities=27% Similarity=0.707 Sum_probs=45.5
Q ss_pred CCcceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC
Q 013795 139 NFKGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 139 Nf~g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
+..+.|| +|++||+ + .++||||+.|++|||..|+|++.. ..+. ++.|+|+.|..+.
T Consensus 3 ~~e~~~C~~C~~~~~-~----~~~mI~Cd~C~~WfH~~Cvgl~~~----~~~~----~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYA-A----DEFWICCDLCEMWFHGKCVKITPA----RAEH----IKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCC-S----SSCEEECSSSCCEEETTTTTCCTT----GGGG----CSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccC-C----CCCEEEccCCCCCCCccccCcChh----HhcC----CCcEECCCCcCcC
Confidence 5678999 9999994 3 379999999999999999999642 1222 5799999998765
No 4
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.32 E-value=6.5e-14 Score=112.17 Aligned_cols=57 Identities=33% Similarity=0.810 Sum_probs=46.3
Q ss_pred CCCCcceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 137 NHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 137 n~Nf~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
+.|..++||+|++|| |+ .++||||+.|++|||..|||++.. .... ++.|+|+.|..+
T Consensus 5 ~~~~~~~yCiC~~~~-~~----~~~MI~Cd~C~~WfH~~Cvg~~~~----~~~~----~~~~~C~~C~~~ 61 (75)
T 3kqi_A 5 SMATVPVYCVCRLPY-DV----TRFMIECDACKDWFHGSCVGVEEE----EAPD----IDIYHCPNCEKT 61 (75)
T ss_dssp TTCCCCEETTTTEEC-CT----TSCEEECTTTCCEEEHHHHTCCTT----TGGG----BSSCCCHHHHHH
T ss_pred CCCCCeeEEECCCcC-CC----CCCEEEcCCCCCCEeccccccccc----ccCC----CCEEECCCCccc
Confidence 456789999999998 43 479999999999999999999643 1122 678999999865
No 5
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.28 E-value=1.3e-13 Score=110.45 Aligned_cols=65 Identities=32% Similarity=0.742 Sum_probs=48.8
Q ss_pred ccccccCCCCCcceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 130 ENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 130 ~n~~N~Yn~Nf~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
.|+.|.|++| ++||+|+++|+ .++||||+.|++|||..||+++.. + ...-.+....|+|+.|..+
T Consensus 6 ~~e~~~~d~~--~~~C~C~~~~~------~~~MI~Cd~C~~WfH~~Cvgl~~~---~-~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 6 SGECEVYDPN--ALYCICRQPHN------NRFMICCDRCEEWFHGDCVGISEA---R-GRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCCCSCCTT--CCCSTTCCCCC------SSCEEECSSSCCEEEHHHHSCCHH---H-HHHHHHHTCCCCCHHHHHH
T ss_pred cCCccccCCC--CCEEECCCccC------CCCEEEeCCCCCcEeCeEEccchh---h-hhhccCCCCeEECcCCcCc
Confidence 4567888888 79999999984 368999999999999999999642 1 0000000468999999754
No 6
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.22 E-value=1.4e-12 Score=97.51 Aligned_cols=50 Identities=30% Similarity=0.751 Sum_probs=41.4
Q ss_pred CcceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCccc
Q 013795 140 FKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 205 (436)
Q Consensus 140 f~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~ 205 (436)
+..+||+|++|++ .++||||+.|++|||..|+|++.. .. .+.|+|+.|..
T Consensus 2 ~d~~~C~C~~~~~------~~~MI~Cd~C~~W~H~~Cvgi~~~------~~----~~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS------NV----PEVFVCQKCRD 51 (52)
T ss_dssp TTCBCSTTCCBCT------TCCEEECTTTCCEEETTTTTCCGG------GC----CSSCCCHHHHT
T ss_pred CcCeEEEeCCcCC------CCCEEEcCCCCccccccccCCCcc------cC----CCcEECcCCCC
Confidence 5789999999973 479999999999999999999642 11 36899999964
No 7
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.15 E-value=7.9e-12 Score=99.21 Aligned_cols=54 Identities=28% Similarity=0.597 Sum_probs=42.8
Q ss_pred CCcceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 139 NFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 139 Nf~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
+-..+||+|+++|+| ...||||+.|++|||..||+++... .. ...|+|+.|..+
T Consensus 13 ~~~~~~C~C~~~~~~-----g~~mI~Cd~C~~W~H~~Cvg~~~~~-----~~----~~~~~C~~C~~~ 66 (72)
T 1wee_A 13 DNWKVDCKCGTKDDD-----GERMLACDGCGVWHHTRCIGINNAD-----AL----PSKFLCFRCIEL 66 (72)
T ss_dssp CSSEECCTTCCCSCC-----SSCEEECSSSCEEEETTTTTCCTTS-----CC----CSCCCCHHHHHH
T ss_pred CCcceEeeCCCccCC-----CCcEEECCCCCCccCCeeeccCccc-----cC----CCcEECCCccCC
Confidence 456799999999732 3589999999999999999996421 11 478999999764
No 8
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.09 E-value=4.1e-12 Score=118.06 Aligned_cols=68 Identities=22% Similarity=0.509 Sum_probs=48.9
Q ss_pred cceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCC--CCCccCeeecCCcccCCccccccc
Q 013795 141 KGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDE--GEPVYEDFICKACSAVCSFLSTYP 214 (436)
Q Consensus 141 ~g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~--~e~~~~~fIC~~C~~~~pfL~~y~ 214 (436)
.|.|| +|+++|+ +++. ...||||+.|++|||..|+|++.. ..+. ..|....|+|+.|..+.+.+++|+
T Consensus 1 ~G~~CpiC~k~Y~-~~~~-~~~MIqCd~C~~W~H~~Cvgi~~~----~~e~~~~~pe~~~y~Cp~C~~~~~~~~~~~ 71 (183)
T 3lqh_A 1 SGNFCPLCDKCYD-DDDY-ESKMMQCGKCDRWVHSKCENLSDE----MYEILSNLPESVAYTCVNCTERHPAEWRLA 71 (183)
T ss_dssp -CCBCTTTCCBCT-TCCT-TCCEEECTTTCCEEEGGGSSCCHH----HHHHHHHSHHHHCCCCTTTCCSSSCHHHHH
T ss_pred CcCcCCCCcCccC-Cccc-CCCeEECCCCCcccchhccccCHH----HHHHhhcCCCCCeeECcCCCCCCCHHHHHH
Confidence 47899 7999995 4321 367999999999999999999531 0000 000134899999999998888764
No 9
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.05 E-value=8.1e-12 Score=131.43 Aligned_cols=62 Identities=34% Similarity=0.786 Sum_probs=48.5
Q ss_pred ccccCCCCCcceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 132 AENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 132 ~~N~Yn~Nf~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+.|++|..++||+|++|| |+ .+.||||+.|++|||..|+|++.. ..+. .+.|+|+.|..+
T Consensus 27 ~~~s~~~~~~~~yC~C~~~~-d~----~~~MIqCd~C~~WfH~~Cvgl~~~----~~~~----~~~~~C~~C~~~ 88 (488)
T 3kv5_D 27 GRASAPPPPPPVYCVCRQPY-DV----NRFMIECDICKDWFHGSCVGVEEH----HAVD----IDLYHCPNCAVL 88 (488)
T ss_dssp -----CCCCCCEETTTTEEC-CT----TSCEEEBTTTCCEEEHHHHTCCGG----GGGG----EEEBCCHHHHHH
T ss_pred CCCCCcCCCCCeEEeCCCcC-CC----CCCeEEccCCCCceeeeecCcCcc----cccC----CCEEECCCCcCC
Confidence 45689999999999999998 44 489999999999999999999642 2223 689999999865
No 10
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.02 E-value=2.2e-11 Score=90.94 Aligned_cols=47 Identities=38% Similarity=0.960 Sum_probs=36.7
Q ss_pred EEeeCCCCCCCCcccccceeecc-cccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcc
Q 013795 144 YCTCNRPYPDPDVEEQVEMIQCC-ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 204 (436)
Q Consensus 144 yC~C~rpYpDp~~e~~~~MiQC~-~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~ 204 (436)
.|+|++||+ + .+.||||+ .|++|||..|+|++.. + . . ...|+|+.|.
T Consensus 5 cc~C~~p~~-~----~~~mI~Cd~~C~~WfH~~Cvgl~~~---~-~-~----~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCK-D----KVDWVQCDGGCDEWFHQVCVGVSPE---M-A-E----NEDYICINCA 52 (52)
T ss_dssp CTTCCCCCC-T----TCCEEECTTTTCCEEETTTTTCCHH---H-H-H----HSCCCCSCC-
T ss_pred CCCCcCccC-C----CCcEEEeCCCCCccCcccccCCCcc---c-c-C----CCCEECCCCC
Confidence 478999994 3 47899999 8999999999999642 1 1 1 3689999984
No 11
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.95 E-value=1e-10 Score=94.34 Aligned_cols=56 Identities=32% Similarity=0.648 Sum_probs=42.6
Q ss_pred cceEEeeCCCCCCCCcccccceeecc--cccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCC--ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~--~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+||+|+++.+ .++||||+ .|..|||..|||++.. +.. ......+.|+|+.|..+
T Consensus 15 ~~~~CiC~~~~~------~g~MI~CD~~~C~~W~H~~CVgi~~~---~~~-~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRCVCGNSLE------TDSMIQCEDPRCHVWQHVGCVILPDK---PMD-GNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCSSCCCCC------CSCEEECSSTTTCCEEEHHHHSCCCT---TTC-SCSCSCSSCCCHHHHHC
T ss_pred CCEEeECCCcCC------CCCEEEECCccCCccccCEEEccccc---ccc-ccccCCCCEECCCCCcc
Confidence 689999999942 47999999 9999999999999753 110 00012579999999754
No 12
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.93 E-value=2.4e-10 Score=89.82 Aligned_cols=54 Identities=26% Similarity=0.512 Sum_probs=40.0
Q ss_pred cceEEeeCCCCCCCCcccccceeecc--cccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCccc
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCC--ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 205 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~--~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~ 205 (436)
..+||+|+.++. .++||||+ .|..|||..|||++..+ ..... ..+.|+|+.|..
T Consensus 9 ~~v~C~C~~~~~------~g~mI~CD~~~C~~W~H~~Cvgi~~~~-~~~~~----~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRCICSSTMV------NDSMIQCEDQRCQVWQHLNCVLIPDKP-GESAE----VPPVFYCELCRL 64 (68)
T ss_dssp CEECCTTCCCSC------CSCEEECSCTTTCEEEETTTSCCCSST-TSCCC----CCSSCCCHHHHH
T ss_pred CCEEeECCCCcC------CCCEEEECCCCCCCeEchhhCCCCccc-ccccC----CCCcEECcCccC
Confidence 358999998852 47999999 49999999999997531 11111 146899999963
No 13
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.86 E-value=2.5e-10 Score=87.57 Aligned_cols=48 Identities=31% Similarity=0.771 Sum_probs=39.3
Q ss_pred cceEEeeCCCCCCCCcccccceeeccc--cc-ccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~~--CE-DWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+||+|++++ .++||+|+. |. +|||..|||++.. | -..|+|+.|..+
T Consensus 8 e~~yC~C~~~~-------~g~mi~CD~~~C~~~wfH~~Cvgl~~~---p--------~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYCLCHQVS-------YGEMIGCDNPDCPIEWFHFACVDLTTK---P--------KGKWFCPRCVQE 58 (59)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSSC---C--------SSCCCCHHHHCC
T ss_pred CCcEEECCCCC-------CCCeeEeeCCCCCCCCEecccCCcccC---C--------CCCEECcCccCc
Confidence 57899999986 268999999 77 8999999999642 3 247999999764
No 14
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.85 E-value=6.2e-11 Score=123.46 Aligned_cols=54 Identities=35% Similarity=0.910 Sum_probs=44.1
Q ss_pred cceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
..+||+|++|| |+ .+.||||+.|++|||..|+|++.. .... .+.|+|+.|..+.
T Consensus 4 ~~~yCiC~~~~-d~----~~~MIqCD~C~~WfH~~CVgi~~~----~~~~----~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 4 VPVYCLCRLPY-DV----TRFMIECDMCQDWFHGSCVGVEEE----KAAD----IDLYHCPNCEVLH 57 (447)
T ss_dssp CCEETTTTEEC-CT----TSCEEECTTTCCEEEHHHHTCCHH----HHTT----EEECCCHHHHHHH
T ss_pred CCeEEeCCCcC-CC----CCCeEEcCCCCcccccccCCcCcc----cccC----CCEEECCCCcccc
Confidence 57899999998 44 489999999999999999999642 1223 6899999998753
No 15
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.85 E-value=3.2e-10 Score=87.83 Aligned_cols=49 Identities=31% Similarity=0.652 Sum_probs=39.6
Q ss_pred cceEEeeCCCCCCCCcccccceeeccccc---ccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCCICE---DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~~CE---DWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
..+||+|++++ .++||||+.|+ +|||..||+++.. | ...|+|+.|..++
T Consensus 10 e~~yC~C~~~~-------~g~MI~CD~c~C~~~WfH~~Cvgl~~~---p--------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 10 EPTYCLCNQVS-------YGEMIGCDNEQCPIEWFHFSCVSLTYK---P--------KGKWYCPKCRGDN 61 (62)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSSC---C--------SSCCCCHHHHTCC
T ss_pred CCcEEECCCCC-------CCCeeeeeCCCCCcccEecccCCcCcC---C--------CCCEECcCcccCC
Confidence 47999999986 26899999954 9999999999642 2 3589999997653
No 16
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.84 E-value=1.1e-09 Score=86.92 Aligned_cols=49 Identities=35% Similarity=0.828 Sum_probs=40.1
Q ss_pred cceEEeeCCCCCCCCcccccceeeccc--cc-ccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~~--CE-DWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
..+||+|++++ .++||+|+. |. +|||..||+|+.. | -..|+|+.|..+.
T Consensus 15 ~~~~C~C~~~~-------~g~MI~CD~~~C~~~wfH~~Cvgl~~~---p--------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTTK---P--------RGKWFCPRCSQES 66 (71)
T ss_dssp SCCCSTTCCCS-------CSSEECCSCSSCSCCCEETTTTTCSSC---C--------SSCCCCTTTSSCS
T ss_pred CCCEEECCCCC-------CCCEeEeeCCCCCCccEecccCCcCcC---C--------CCCEECCCCCccc
Confidence 57899999986 268999999 77 8999999999642 3 2479999998654
No 17
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.81 E-value=1.2e-09 Score=90.80 Aligned_cols=50 Identities=34% Similarity=0.782 Sum_probs=40.6
Q ss_pred CcceEEeeCCCCCCCCcccccceeeccc--cc-ccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC
Q 013795 140 FKGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 140 f~g~yC~C~rpYpDp~~e~~~~MiQC~~--CE-DWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
...+||+|++++. ++||+|+. |. +|||..||+|+.. | ...|+|+.|..+.
T Consensus 34 ~e~~yCiC~~~~~-------g~MI~CD~~dC~~~WfH~~CVgl~~~---p--------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYCLCHQVSY-------GEMIGCDNPDCSIEWFHFACVGLTTK---P--------RGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCSTTCCBCC-------SCCCCCSCSSCSCCCCCSTTTTCSSC---C--------CSSCCCTTTCCCC
T ss_pred CCCcEEECCCCCC-------CCEeEecCCCCCCCCEecccCCcCcC---C--------CCCEECcCccCcC
Confidence 3679999999862 68999999 76 9999999999642 3 2479999998654
No 18
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.79 E-value=1.6e-10 Score=105.23 Aligned_cols=53 Identities=26% Similarity=0.824 Sum_probs=42.8
Q ss_pred cceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
.+.||+|++|| |+ .+.||||+.|++|||..|+|++.. ..+. .+.|+|+.|..+
T Consensus 7 ~~~~C~C~~~~-~~----~~~mi~Cd~C~~WfH~~Cv~~~~~----~~~~----~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYCICKTPE-DE----SKFYIGCDRCQNWYHGRCVGILQS----EAEL----IDEYVCPQCQST 59 (174)
T ss_dssp CCEETTTTEEC-CT----TSCEEECTTTCCEEEHHHHTCCHH----HHTT----CSSCCCHHHHHH
T ss_pred CCcEeeCCCCC-CC----CCCEeECCCCCchhChhhcCCchh----hccC----ccCeecCCCcch
Confidence 57899999998 33 478999999999999999998642 1122 578999999864
No 19
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.77 E-value=8.9e-11 Score=91.84 Aligned_cols=53 Identities=21% Similarity=0.496 Sum_probs=38.5
Q ss_pred eEEeeCCCCCCCCcccccceeecc-cccccccCCCCCCCCCCCCCC--CCCCCCccCeeecCCccc
Q 013795 143 VYCTCNRPYPDPDVEEQVEMIQCC-ICEDWFHEEHIGLEPSDEIPR--DDEGEPVYEDFICKACSA 205 (436)
Q Consensus 143 ~yC~C~rpYpDp~~e~~~~MiQC~-~CEDWfH~~Cl~~~~~~~~p~--~~~~e~~~~~fIC~~C~~ 205 (436)
.-++|++||+ + ..+||||+ .|++|||..||||+... ... .+. ...|+|+.|.+
T Consensus 10 ~C~~C~~p~~-~----~~~mI~CD~~C~~WfH~~Cvglt~~~-~~~l~~e~----~~~w~C~~C~~ 65 (65)
T 2vpb_A 10 PCGICTNEVN-D----DQDAILCEASCQKWFHRICTGMTETA-YGLLTAEA----SAVWGCDTCMA 65 (65)
T ss_dssp BCTTTCSBCC-T----TSCEEEBTTTTCCEEEHHHHTCCHHH-HHHHHHCT----TEEECCHHHHC
T ss_pred cCccCCCccC-C----CCCeEecccCccccCchhccCCCHHH-HHHhhccC----CCcEECcCccC
Confidence 3458999994 4 37999999 99999999999997420 000 011 34899999963
No 20
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.76 E-value=8.3e-10 Score=87.86 Aligned_cols=52 Identities=31% Similarity=0.735 Sum_probs=41.2
Q ss_pred CcceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 140 FKGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 140 f~g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+.|| +|++++. .+.||+|+.|+.|||..||+++.. +. . ...|+|+.|..+
T Consensus 16 ~~~~~C~~C~~~~~------~~~mi~CD~C~~wfH~~Cv~~~~~---~~--~----~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDD------GSPMIGCDDCDDWYHWPCVGIMAA---PP--E----EMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCS------SCCEEECSSSSSEEEHHHHTCSSC---CC--S----SSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCC------CCCEEEcCCCCcccccccCCCCcc---CC--C----CCCEEChhccCc
Confidence 457899 9999972 368999999999999999998643 11 1 358999999765
No 21
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.75 E-value=9.5e-10 Score=84.56 Aligned_cols=48 Identities=35% Similarity=0.829 Sum_probs=38.6
Q ss_pred cceEEeeCCCCCCCCcccccceeeccc--cc-ccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~~--CE-DWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+||+|++++ .++||+|+. |. +|||..|||++. .| ...|+|+.|..+
T Consensus 9 e~~~C~C~~~~-------~g~mi~CD~cdC~~~wfH~~Cvgl~~---~p--------~g~w~C~~C~~~ 59 (60)
T 2vnf_A 9 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT---KP--------RGKWFCPRCSQE 59 (60)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS---CC--------SSCCCCHHHHC-
T ss_pred CCCEEECCCcC-------CCCEEEeCCCCCCCceEehhcCCCCc---CC--------CCCEECcCccCc
Confidence 57999999985 268999999 66 999999999864 23 247999999764
No 22
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.73 E-value=4e-10 Score=95.87 Aligned_cols=52 Identities=23% Similarity=0.555 Sum_probs=38.6
Q ss_pred eeCCCCCCCCcccccceeecc-cccccccCCCCCCCCCCCCCC--CCCCCCccCeeecCCcccCC
Q 013795 146 TCNRPYPDPDVEEQVEMIQCC-ICEDWFHEEHIGLEPSDEIPR--DDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 146 ~C~rpYpDp~~e~~~~MiQC~-~CEDWfH~~Cl~~~~~~~~p~--~~~~e~~~~~fIC~~C~~~~ 207 (436)
+|++||+ + .+.||||+ .|++|||..||||+... ... .+. ...|+|+.|..+.
T Consensus 8 iC~~p~~-~----~~~mi~Cdd~C~~WfH~~CVglt~~~-~~~i~~~~----~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 8 ACRSEVN-D----DQDAILCEASCQKWFHRECTGMTESA-YGLLTTEA----SAVWACDLCLKTK 62 (105)
T ss_dssp TTCSBCC-T----TSCEEECTTTTCCEEEGGGTTCCHHH-HHHHHHCT----TEEECCHHHHHTT
T ss_pred CCCCccC-C----CCCEEEecCCcccccccccCCcCHHH-HHhhccCC----CCCEECccccCcC
Confidence 8999995 3 36899998 99999999999997420 000 011 3789999998764
No 23
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=1.5e-09 Score=86.08 Aligned_cols=48 Identities=33% Similarity=0.787 Sum_probs=39.5
Q ss_pred cceEEeeCCCCCCCCcccccceeeccccc---ccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCCICE---DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~~CE---DWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+||+|++++ .++||||+.|+ +|||..||+|+.. | ...|+|+.|..+
T Consensus 5 ~~~yC~C~~~~-------~g~MI~CD~cdC~~~WfH~~Cvgl~~~---p--------~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 5 SSGYCICNQVS-------YGEMVGCDNQDCPIEWFHYGCVGLTEA---P--------KGKWYCPQCTAA 55 (70)
T ss_dssp CCCCSTTSCCC-------CSSEECCSCTTCSCCCEEHHHHTCSSC---C--------SSCCCCHHHHHH
T ss_pred CCeEEEcCCCC-------CCCEeEeCCCCCCccCCcccccccCcC---C--------CCCEECCCCCcc
Confidence 57899999985 26999999974 9999999999642 2 368999999754
No 24
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.64 E-value=6.2e-09 Score=86.41 Aligned_cols=47 Identities=30% Similarity=0.728 Sum_probs=38.3
Q ss_pred CcceEEeeCCCCCCCCcccccceeeccccc---ccccCCCCCCCCCCCCCCCCCCCCccCeeecCC-cc
Q 013795 140 FKGVYCTCNRPYPDPDVEEQVEMIQCCICE---DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKA-CS 204 (436)
Q Consensus 140 f~g~yC~C~rpYpDp~~e~~~~MiQC~~CE---DWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~-C~ 204 (436)
-..+||+|++++ .++||+|+.|. +|||..||||+.. | ...|+|+. |.
T Consensus 24 ~~~~yCiC~~~~-------~g~MI~CD~c~C~~eWfH~~CVgl~~~---p--------~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYCFCRNVS-------YGPMVACDNPACPFEWFHYGCVGLKQA---P--------KGKWYCSKDCK 74 (90)
T ss_dssp CCSCCSTTTCCC-------SSSEECCCSSSCSCSCEETTTSSCSSC---T--------TSCCCSSHHHH
T ss_pred CCCcEEEeCCCC-------CCCEEEecCCCCccccCcCccCCCCcC---C--------CCCccCChhhc
Confidence 357899999986 25799999977 9999999999642 3 24799999 86
No 25
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.61 E-value=1.6e-08 Score=84.89 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=40.2
Q ss_pred ceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC
Q 013795 142 GVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 142 g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
.+.|+|+.++. .+.||||+.|..|||..|++++.. .+ .+.|+|+.|..+.
T Consensus 28 ~vrCiC~~~~~------~~~mi~Cd~C~~w~H~~C~~~~~~-~~---------p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 28 VTRCICGFTHD------DGYMICCDKCSVWQHIDCMGIDRQ-HI---------PDTYLCERCQPRN 77 (98)
T ss_dssp BCCCTTSCCSC------SSCEEEBTTTCBEEETTTTTCCTT-SC---------CSSBCCTTTSSSC
T ss_pred CEEeECCCccC------CCcEEEcCCCCCcCcCcCCCCCcc-CC---------CCCEECCCCcCCC
Confidence 57899999863 479999999999999999998532 12 2469999997654
No 26
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=98.46 E-value=9.8e-08 Score=88.07 Aligned_cols=67 Identities=18% Similarity=0.389 Sum_probs=44.7
Q ss_pred CCcceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC-cccccccc
Q 013795 139 NFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC-SFLSTYPQ 215 (436)
Q Consensus 139 Nf~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~-pfL~~y~~ 215 (436)
|-...||+|+.|.. +...|+||..|..|||..|+......-+|. +- |..|+|..|.... .+++|-+.
T Consensus 2 n~~~~yCYCG~~~~-----~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~-~~----fY~F~C~~C~~~g~E~f~R~~~ 69 (177)
T 3rsn_A 2 DTQAGSVDEENGRQ-----LGEVELQCGICTKWFTADTFGIDTSSCLPF-MT----NYSFHCNVCHHSGNTYFLRKQA 69 (177)
T ss_dssp ---------CTTCC-----TTSCEEECTTTCCEEEGGGGTCCCTTCCTT-CC----SEEEECTTTSTTSSCEEEECCC
T ss_pred CCeeeEEEcCCCCC-----CCceeEeeccccceecHHHhcccccCcccc-ce----eEEEEccccCCCCcceeEeccC
Confidence 44567999999863 468999999999999999998654322332 23 8999999999864 88887654
No 27
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.33 E-value=1.1e-07 Score=100.26 Aligned_cols=40 Identities=33% Similarity=0.686 Sum_probs=33.5
Q ss_pred ccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 159 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 159 ~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
...||||+.|++|||+.|||++.. .++. .+.|+||.|...
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~----~a~~----~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQF----EYYL----YEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGG----GTTT----EEECCCTTTHHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChh----HhcC----CCeEECcCCcCC
Confidence 389999999999999999999753 2334 789999999864
No 28
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.88 E-value=1.2e-06 Score=74.93 Aligned_cols=40 Identities=25% Similarity=0.705 Sum_probs=30.1
Q ss_pred ceeecccccccccCCCCCCCCC-----CCCCCCCCCCCccCeeecCCcccCC
Q 013795 161 EMIQCCICEDWFHEEHIGLEPS-----DEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 161 ~MiQC~~CEDWfH~~Cl~~~~~-----~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
-||||+.|++|||..|++++.. ..+|. ...|.|+.|..+.
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~-------~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPE-------SVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCT-------TTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccc-------cceeeCccccccc
Confidence 3999999999999999999641 12231 3579999997643
No 29
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.68 E-value=7.9e-06 Score=69.63 Aligned_cols=45 Identities=18% Similarity=0.541 Sum_probs=32.6
Q ss_pred ccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCCc
Q 013795 159 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCS 208 (436)
Q Consensus 159 ~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~p 208 (436)
...||||..|++|||..|+++... .++..+. .+.|.|+.|.+..|
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~-~~~~~~~----~~~~~C~~C~~~~~ 116 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGE-GLLNEEL----PNCWECPKCYQEDS 116 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCC-CEECSSS----SSEEECTTTC----
T ss_pred CcceEEeeecCCeEECCCCCCCcc-ccccccC----CCCeECCCCcCCCC
Confidence 467999999999999999998643 3333333 67899999987654
No 30
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.32 E-value=6.1e-05 Score=55.25 Aligned_cols=46 Identities=24% Similarity=0.527 Sum_probs=33.6
Q ss_pred eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 146 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 146 ~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
+|+++. + .+.||.|+.|..|||..|++.+-. .+| -..|+|+.|...
T Consensus 5 vC~~~~-~-----~~~ll~Cd~C~~~~H~~Cl~p~l~-~~P--------~g~W~C~~C~~~ 50 (51)
T 1f62_A 5 VCRKKG-E-----DDKLILCDECNKAFHLFCLRPALY-EVP--------DGEWQCPACQPA 50 (51)
T ss_dssp TTCCSS-C-----CSCCEECTTTCCEECHHHHCTTCC-SCC--------SSCCSCTTTSCC
T ss_pred CCCCCC-C-----CCCEEECCCCChhhCcccCCCCcC-CCC--------CCcEECcCcccc
Confidence 577664 1 368999999999999999964221 233 247999999753
No 31
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=96.98 E-value=0.00017 Score=54.85 Aligned_cols=46 Identities=22% Similarity=0.651 Sum_probs=33.9
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCccc
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 205 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~ 205 (436)
..+| +|++. +.||.|+.|..|||..|++.+-. .+| -..|+|+.|..
T Consensus 5 ~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~-~~p--------~g~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLK-TIP--------KGMWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCC---------SSCEECSSSSCEECGGGSSSCCS-SCC--------CSCCCCHHHHH
T ss_pred CCCCcCCCCC---------CcEEEcCCCCcCEECCcCCCCcC-CCC--------CCceEChhccC
Confidence 4456 67754 58999999999999999984321 233 24799999964
No 32
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=96.73 E-value=0.0009 Score=51.09 Aligned_cols=48 Identities=23% Similarity=0.636 Sum_probs=35.0
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
..+| +|++. +.||.|+.|..+||..|++.+-. .+| -..|+|+.|..+.
T Consensus 9 ~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~-~~p--------~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDG---------GELLCCDTCPSSYHIHCLNPPLP-EIP--------NGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCC---------SSCBCCSSSCCCBCSSSSSSCCS-SCC--------SSCCCCTTTTTTC
T ss_pred CCcCCCCCCC---------CCEEEcCCCCHHHcccccCCCcC-cCC--------CCccCChhhcCch
Confidence 4456 57743 57999999999999999985321 233 2579999998653
No 33
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.73 E-value=0.00042 Score=57.26 Aligned_cols=50 Identities=24% Similarity=0.486 Sum_probs=37.6
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+| +|++.. + ...||.|+.|..|||..||+.+-. .+| ...|+|+.|..+
T Consensus 16 ~~~C~vC~~~~-~-----~~~ll~CD~C~~~~H~~Cl~Ppl~-~~P--------~g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGD-E-----DDKLLFCDGCDDNYHIFCLLPPLP-EIP--------RGIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSG-G-----GGGCEECTTTCCEECSSSSSSCCS-SCC--------SSCCCCHHHHHH
T ss_pred CCCCccCCCcC-C-----CCCEEEcCCCCchhccccCCCCcc-cCC--------CCCcCCccCcCc
Confidence 3467 899885 2 378999999999999999984321 334 257999999754
No 34
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=96.53 E-value=0.0013 Score=51.62 Aligned_cols=47 Identities=19% Similarity=0.427 Sum_probs=34.0
Q ss_pred eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 146 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 146 ~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
+|++... .+.||.|+.|..|||..||+.+-. .+|. -..++|+.|...
T Consensus 23 ~C~~~~~------~~~ll~CD~C~~~yH~~Cl~Ppl~-~~P~-------g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQD------PDKQLMCDECDMAFHIYCLDPPLS-SVPS-------EDEWYCPECRND 69 (70)
T ss_dssp TTCCCSC------GGGEEECTTTCCEEEGGGSSSCCS-SCCS-------SSCCCCTTTSCC
T ss_pred CCCCcCC------CCCEEEcCCCCCceecccCCCCcC-CCCC-------CCCcCCcCccCc
Confidence 5676631 479999999999999999984221 3442 237999999753
No 35
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.47 E-value=0.0011 Score=49.63 Aligned_cols=46 Identities=22% Similarity=0.651 Sum_probs=34.0
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCccc
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 205 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~ 205 (436)
..+| +|++. +.||.|+.|..|||..|++.+-. .+| ...|+|+.|..
T Consensus 9 ~~~C~vC~~~---------g~ll~Cd~C~~~~H~~Cl~ppl~-~~p--------~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLK-TIP--------KGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---------SCCEECSSSSCEECSSSSSSCCC-SCC--------CSSCCCHHHHC
T ss_pred CCCCccCCCC---------CeEEEcCCCCcceECccCCCCcC-CCC--------CCceEChhhhC
Confidence 4567 58754 57999999999999999984321 233 25799999964
No 36
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.38 E-value=0.00092 Score=51.05 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=35.7
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+| +|++. +.||.|+.|..|||..|++.+.. .+| -..|+|+.|...
T Consensus 11 ~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~p~l~-~~p--------~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG---------GEIILCDTCPRAYHMVCLDPDME-KAP--------EGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC---------SSEEECSSSSCEEEHHHHCTTCC-SCC--------CSSCCCTTGGGG
T ss_pred CCCCccCCCC---------CcEEECCCCChhhhhhccCCCCC-CCC--------CCceECcccccc
Confidence 4577 58863 58999999999999999987432 233 257999999753
No 37
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.34 E-value=0.0013 Score=50.95 Aligned_cols=47 Identities=28% Similarity=0.519 Sum_probs=34.8
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+| +|+.. +.||.|+.|..|||..|++.+-. .+| -..|+|+.|..+
T Consensus 8 ~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~ppl~-~~P--------~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRDG---------GELICCDGCPRAFHLACLSPPLR-EIP--------SGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSCC---------SSCEECSSCCCEECTTTSSSCCS-SCC--------SSCCCCHHHHHT
T ss_pred CCCCccCCCC---------CCEEEcCCCChhhcccccCCCcC-cCC--------CCCeECccccCc
Confidence 4466 68753 57999999999999999984321 233 257999999754
No 38
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=96.28 E-value=0.0023 Score=51.15 Aligned_cols=50 Identities=28% Similarity=0.585 Sum_probs=39.5
Q ss_pred ccceEeecCCCCCCCceEecccchh-hccCCCccchhhhcccccceeEEEeec-ccccccccCCCCCC
Q 013795 52 RQAIFSCLSCAPEGNAGVCTACSLT-CHDGHESWWWHCIVMSSSVCKIVELWT-KRNFRCDCGNSKFG 117 (436)
Q Consensus 52 ~q~~~~c~~c~~~~~~~~c~~c~~~-ch~~h~~~~~~~~~~~~~~~~~~e~~~-~r~f~cdcg~~~~~ 117 (436)
-..+|.|+||.......+|..|-.. =|.+|+ +-++. ..+..||||+....
T Consensus 14 ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~----------------~~~~~s~~gG~CDCGD~eaw 65 (75)
T 3ny3_A 14 GEPTYSCRDCAVDPTCVLCMECFLGSIHRDHR----------------YRMTTSGGGGFCDCGDTEAW 65 (75)
T ss_dssp TCEEEEETTTBSSTTCCBCHHHHHTSGGGGSC----------------EEEEECCSCBBCCTTCTTTB
T ss_pred CCEEEECccCCCCCCeeEChHHCCCCCcCCce----------------EEEEEcCCCCEecCcCHHHc
Confidence 4669999999998888999999855 799999 44443 34678999987543
No 39
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=96.08 E-value=0.0016 Score=53.36 Aligned_cols=54 Identities=22% Similarity=0.465 Sum_probs=38.8
Q ss_pred eEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC--Ccccc
Q 013795 143 VYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV--CSFLS 211 (436)
Q Consensus 143 ~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~--~pfL~ 211 (436)
..++|++... .+ .+.||.|+.|..|||..|++++. +| -..|+|+.|... ..+|.
T Consensus 27 ~C~vC~~~~s-~~---~~~ll~CD~C~~~fH~~Cl~p~~---vP--------~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 27 VCSICMDGES-QN---SNVILFCDMCNLAVHQECYGVPY---IP--------EGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCSSCCSSSS-CS---EEEEEECSSSCCCCCHHHHTCSS---CC--------SSCCCCHHHHHHTTSCC--
T ss_pred cCCcCCCCCC-CC---CCCEEECCCCCchhhcccCCCCc---cC--------CCceECccccCccchhhhh
Confidence 3449998752 11 47999999999999999999852 34 257999999854 35554
No 40
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.00 E-value=0.005 Score=49.29 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=34.6
Q ss_pred EE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCccc
Q 013795 144 YC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 205 (436)
Q Consensus 144 yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~ 205 (436)
+| +|++.-+ .+.||.|+.|..+||..||+.+-. .+|. -..++|+.|..
T Consensus 28 ~C~vC~~~~~------~~~ll~CD~C~~~yH~~Cl~Ppl~-~~P~-------g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE------PNMQLLCDECNVAYHIYCLNPPLD-KVPE-------EEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC------STTEEECSSSCCEEETTSSSSCCS-SCCC-------SSCCCCTTTCC
T ss_pred CCcCcCCcCC------CCCEEEcCCCCccccccccCCCcc-CCCC-------CCCcCCcCccC
Confidence 44 6777631 479999999999999999984221 3442 23799999964
No 41
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=95.94 E-value=0.0012 Score=52.03 Aligned_cols=50 Identities=22% Similarity=0.552 Sum_probs=37.4
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+| +|++... .+ .+.||.|+.|..|||..|++++. +| -..|+|+.|..+
T Consensus 16 ~~~C~vC~~~~s-~~---~~~ll~CD~C~~~~H~~Cl~~~~---vP--------~g~W~C~~C~~~ 66 (71)
T 2ku3_A 16 DAVCSICMDGES-QN---SNVILFCDMCNLAVHQECYGVPY---IP--------EGQWLCRHCLQS 66 (71)
T ss_dssp SCSCSSSCCCCC-CS---SSCEEECSSSCCEEEHHHHTCSS---CC--------SSCCCCHHHHHH
T ss_pred CCCCCCCCCCCC-CC---CCCEEECCCCCCccccccCCCCc---CC--------CCCcCCccCcCc
Confidence 3445 8988742 11 47999999999999999999852 44 247999999753
No 42
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=95.85 E-value=0.0026 Score=48.77 Aligned_cols=55 Identities=22% Similarity=0.498 Sum_probs=37.8
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCC-CCCCCCCCCccCeeecCCcccCC
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDE-IPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~-~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
..+| +|++.+. .+ .+.||.|+.|..|||..|++.+-... ++ . -..|+|+.|..+.
T Consensus 6 ~~~C~vC~~~~~-~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~---p----~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 6 SGVCTICQEEYS-EA---PNEMVICDKCGQGYHQLCHTPHIDSSVID---S----DEKWLCRQCVFAT 62 (66)
T ss_dssp CCCBSSSCCCCC-BT---TBCEEECSSSCCEEETTTSSSCCCHHHHH---S----SCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCC-CC---CCCEEECCCCChHHHhhhCCCcccccccC---C----CCCEECCCCcCcc
Confidence 3455 8888752 21 47999999999999999998632100 10 1 2579999997543
No 43
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=95.81 E-value=0.0039 Score=58.11 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=34.3
Q ss_pred eEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC
Q 013795 143 VYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 143 ~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
-+| +|+++ +.||.|+.|..|||..|++.+-. .+| -..|+|+.|....
T Consensus 8 ~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~p~l~-~~p--------~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNG---------GDLLCCEKCPKVFHLTCHVPTLL-SFP--------SGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCC---------EEEEECSSSSCEECTTTSSSCCS-SCC--------SSCCCCTTTSCSS
T ss_pred CCCCCCCCC---------CceEEcCCCCCccCCccCCCCCC-CCC--------CCCEEeCceeCcc
Confidence 356 68754 56999999999999999964321 233 2479999998654
No 44
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=95.73 E-value=0.0046 Score=56.47 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=29.4
Q ss_pred cceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccCC
Q 013795 160 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 160 ~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
+.||.|+.|..|||..|++.+-. .+| -..|+|+.|....
T Consensus 14 g~ll~Cd~C~~~~H~~C~~p~l~-~~p--------~~~W~C~~C~~~~ 52 (184)
T 3o36_A 14 GELLCCEKCPKVFHLSCHVPTLT-NFP--------SGEWICTFCRDLS 52 (184)
T ss_dssp SSCEECSSSSCEECTTTSSSCCS-SCC--------SSCCCCTTTSCSS
T ss_pred CeeeecCCCCcccCccccCCCCC-CCC--------CCCEECccccCcc
Confidence 56999999999999999954321 233 2479999998653
No 45
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=95.70 E-value=0.0069 Score=48.54 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=29.0
Q ss_pred ccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCccc
Q 013795 159 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 205 (436)
Q Consensus 159 ~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~ 205 (436)
.+.||.|+.|..+||..|++.+-. .+|. .+.|+|+.|..
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~PpL~-~~P~-------g~~W~C~~C~~ 76 (77)
T 3shb_A 38 PDKQLMCDECDMAFHIYCLDPPLS-SVPS-------EDEWYCPECRN 76 (77)
T ss_dssp GGGEEECTTTCCEEETTTSSSCCS-SCCS-------SSCCCCTTTC-
T ss_pred CcceeEeCCCCCccCcccCCCccc-CCCC-------CCceECcCccc
Confidence 478999999999999999984321 3342 34599999964
No 46
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.58 E-value=0.0035 Score=48.76 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=28.9
Q ss_pred cceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 160 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 160 ~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
+.||.|+.|..|||..|++.+-. .+| -..|+|+.|...
T Consensus 22 ~~ll~Cd~C~~~~H~~Cl~P~l~-~~P--------~g~W~C~~C~~~ 59 (66)
T 2lri_C 22 TDVLRCTHCAAAFHWRCHFPAGT-SRP--------GTGLRCRSCSGD 59 (66)
T ss_dssp TTCEECSSSCCEECHHHHCTTTC-CCC--------SSSCCCTTTTTC
T ss_pred CeEEECCCCCCceecccCCCccC-cCC--------CCCEECccccCC
Confidence 56999999999999999964322 234 246999999753
No 47
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=95.39 E-value=0.0049 Score=52.40 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=32.3
Q ss_pred ceEEeeCCCCCCCCcccccceeecc--cccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcc
Q 013795 142 GVYCTCNRPYPDPDVEEQVEMIQCC--ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 204 (436)
Q Consensus 142 g~yC~C~rpYpDp~~e~~~~MiQC~--~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~ 204 (436)
..||.+-+. .+.||.|+ .|..|||..||++.. +| ...|+|+.|.
T Consensus 15 ~~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~Cl~L~~---~P--------~g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGD--------GGELVMCDKKDCPKAYHLLCLNLTQ---PP--------YGKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCC--------CSEEEECCSTTCCCEECTGGGTCSS---CC--------SSCCCCGGGB
T ss_pred CCCCCcCCC--------CCcEeEECCCCCCcccccccCcCCc---CC--------CCCEECCCCC
Confidence 457854332 37899999 899999999999753 44 2468888764
No 48
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=94.95 E-value=0.018 Score=46.80 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=38.7
Q ss_pred ccceEeecCCCCCCCceEecccchh-hccCCCccchhhhcccccceeEEEeecc---cccccccCCCCC
Q 013795 52 RQAIFSCLSCAPEGNAGVCTACSLT-CHDGHESWWWHCIVMSSSVCKIVELWTK---RNFRCDCGNSKF 116 (436)
Q Consensus 52 ~q~~~~c~~c~~~~~~~~c~~c~~~-ch~~h~~~~~~~~~~~~~~~~~~e~~~~---r~f~cdcg~~~~ 116 (436)
-..+|.|+||.......+|..|-.. =|.||+ +-++.. .+..||||+.-.
T Consensus 18 ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~----------------~~~~~s~~~~gG~CDCGD~ea 70 (82)
T 3nis_A 18 GEPLYRCHECGCDDTCVLCIHCFNPKDHVNHH----------------VCTDICTEFTSGICDCGDEEA 70 (82)
T ss_dssp TCEEEEETTTBSSTTCCBCTTTCCGGGGTTSC----------------EEEEECCSSEEEBCCTTCGGG
T ss_pred CCEEEEeeccCCCCCceEchhhCCCCCcCCce----------------EEEEEecCCCCcEecCCCHHH
Confidence 4669999999999888999999854 499999 444543 356899998653
No 49
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=94.70 E-value=0.011 Score=50.27 Aligned_cols=45 Identities=18% Similarity=0.413 Sum_probs=32.8
Q ss_pred eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCccc
Q 013795 146 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 205 (436)
Q Consensus 146 ~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~ 205 (436)
+|+++.+ .+.||.|+.|..|||..|++.+-. .+| -..|+|+.|..
T Consensus 63 ~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P--------~g~W~C~~C~~ 107 (114)
T 2kwj_A 63 LCGTSEN------DDQLLFCDDCDRGYHMYCLNPPVA-EPP--------EGSWSCHLCWE 107 (114)
T ss_dssp TTTCCTT------TTTEEECSSSCCEEETTTSSSCCS-SCC--------SSCCCCHHHHH
T ss_pred cccccCC------CCceEEcCCCCccccccccCCCcc-CCC--------CCCeECccccc
Confidence 5666531 378999999999999999984221 234 24799999964
No 50
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.66 E-value=0.011 Score=49.70 Aligned_cols=48 Identities=21% Similarity=0.578 Sum_probs=34.6
Q ss_pred EE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 144 YC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 144 yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
+| +|+++.. ...||+|+.|..|||..|++.+.. .+| -..|+|+.|...
T Consensus 56 ~C~~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P--------~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGE------DSKMLVCDTCDKGYHTFCLQPVMK-SVP--------TNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSC------CTTEEECSSSCCEEEGGGSSSCCS-SCC--------SSCCCCHHHHCC
T ss_pred cccccCccCC------CCCeeECCCCCcHHhHHhcCCccc-cCC--------CCCcCCcCCcCc
Confidence 45 5777742 267999999999999999974321 233 247899999654
No 51
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.42 E-value=0.043 Score=45.07 Aligned_cols=47 Identities=26% Similarity=0.689 Sum_probs=34.4
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
..+| +|++. +.||.|+.|..-||..|+..+-. .+| -..|+|+.|...
T Consensus 25 ~~~C~vC~~~---------g~LL~CD~C~~~fH~~Cl~PpL~-~~P--------~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP---------GDLVMCNQCEFCFHLDCHLPALQ-DVP--------GEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS---------SCCEECTTSSCEECTTSSSTTCC-CCC--------SSSCCCCSCCCC
T ss_pred CCcCcCcCCC---------CCEEECCCCCCceecccCCCCCC-CCc--------CCCcCCccccCC
Confidence 4567 78754 46999999999999999943211 234 257999999754
No 52
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=94.41 E-value=0.021 Score=54.54 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=26.2
Q ss_pred ccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCccc
Q 013795 159 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 205 (436)
Q Consensus 159 ~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~ 205 (436)
.+.||.|+.|..|||..|++.+-. .+|. -..|+|+.|..
T Consensus 186 ~~~lL~CD~C~~~yH~~CL~PPL~-~vP~-------G~~W~Cp~C~~ 224 (226)
T 3ask_A 186 PDKQLMCDECDMAFHIYCLDPPLS-SVPS-------EDEWYCPECRN 224 (226)
T ss_dssp --CCEECSSSCCEECSCC--CCCC-SCCS-------SSCCCCGGGC-
T ss_pred CCCeEEcCCCCcceeCccCCCCcc-cCCC-------CCCCCCcCCcC
Confidence 478999999999999999984321 3342 23799999964
No 53
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=94.24 E-value=0.028 Score=47.54 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=33.2
Q ss_pred eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 146 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 146 ~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
+|+++..+ .+.||.|+.|..+||..|+.-+-. .+| -..|+|+.|..+
T Consensus 66 vC~~~~~~-----~~~ll~Cd~C~~~yH~~Cl~p~l~-~~P--------~~~W~C~~C~~k 112 (112)
T 3v43_A 66 SCRDQGKN-----ADNMLFCDSCDRGFHMECCDPPLT-RMP--------KGMWICQICRPR 112 (112)
T ss_dssp TTCCCCCT-----TCCCEECTTTCCEECGGGCSSCCS-SCC--------SSCCCCTTTSCC
T ss_pred cccCcCCC-----ccceEEcCCCCCeeecccCCCCCC-CCC--------CCCeECCCCCCc
Confidence 67765311 368999999999999999953211 233 247999999754
No 54
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.21 E-value=0.011 Score=48.34 Aligned_cols=54 Identities=19% Similarity=0.530 Sum_probs=37.9
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCC---CCCCCCCCCCccCeeecCCcccCC
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSD---EIPRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~---~~p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
..+| +|++.. ++. .+.||.|+.|...||..|++.+-.. .+| -..|+|+.|+.+.
T Consensus 16 ~~~C~vC~~~~-~~~---~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p--------~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMT-VAS---GNQLVECQECHNLYHQDCHKPQVTDKEVNDP--------RLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCC-CCT---TCCEEECSSSCCEEETTTSSSCCCHHHHHCT--------TCCCCCHHHHHHH
T ss_pred CCcCCCCCCCC-CCC---CCceEECCCCCCeEcCccCCCcccccccCCC--------CCCeeCccccchh
Confidence 4566 899885 222 3789999999999999999753210 022 3579999997543
No 55
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=92.62 E-value=0.056 Score=49.79 Aligned_cols=38 Identities=24% Similarity=0.557 Sum_probs=28.5
Q ss_pred cceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcccC
Q 013795 160 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 160 ~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~~~ 206 (436)
+.|+.|+.|...||..|+.-+-. .+| -..|+|+.|...
T Consensus 12 g~ll~Cd~C~~~~H~~Cl~p~l~-~~p--------~g~W~C~~C~~~ 49 (189)
T 2ro1_A 12 GDLVMCNQCEFCFHLDCHLPALQ-DVP--------GEEWSCSLCHVL 49 (189)
T ss_dssp SSCCCCTTTCCBCCSTTSTTCCS-SCC--------CTTCCTTTTSCS
T ss_pred CceeECCCCCchhccccCCCCcc-cCC--------CCCCCCcCccCC
Confidence 56999999999999999953211 233 246899999755
No 56
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.65 E-value=0.46 Score=39.63 Aligned_cols=46 Identities=17% Similarity=0.614 Sum_probs=32.8
Q ss_pred EE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcc
Q 013795 144 YC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 204 (436)
Q Consensus 144 yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~ 204 (436)
+| +|+.+.. ...||.|..|...||..||++... .++ ...|.|+.|.
T Consensus 9 ~C~~C~~~g~------~~~ll~C~~C~~~~H~~Cl~~~~~-~~~--------~~~W~C~~C~ 55 (111)
T 2ysm_A 9 NCAVCDSPGD------LLDQFFCTTCGQHYHGMCLDIAVT-PLK--------RAGWQCPECK 55 (111)
T ss_dssp CBTTTCCCCC------TTTSEECSSSCCEECTTTTTCCCC-TTT--------STTCCCTTTC
T ss_pred CCcCCCCCCC------CcCCeECCCCCCCcChHHhCCccc-ccc--------ccCccCCcCC
Confidence 45 6776641 357999999999999999998542 111 2567888774
No 57
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.02 E-value=0.19 Score=42.42 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=27.7
Q ss_pred ccceeecccccccccCCCCCCCCCCCCCCCCCCCCccCeeecCCcc
Q 013795 159 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 204 (436)
Q Consensus 159 ~~~MiQC~~CEDWfH~~Cl~~~~~~~~p~~~~~e~~~~~fIC~~C~ 204 (436)
.+.||.|..|...||..||++.+. +...-. -..|.|+.|.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~--~~~~~~----~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPE--LTVRVK----ALRWQCIECK 62 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHH--HHHHHH----TSCCCCTTTC
T ss_pred chhceEhhhcCCCCCCchhcCCHH--HHHHhh----ccccccccCC
Confidence 478999999999999999987421 000000 2467888884
No 58
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=56.79 E-value=5.1 Score=33.58 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=20.1
Q ss_pred ccceeecccccccccCCCCCCC
Q 013795 159 QVEMIQCCICEDWFHEEHIGLE 180 (436)
Q Consensus 159 ~~~MiQC~~CEDWfH~~Cl~~~ 180 (436)
.+.||.|..|...||..||++.
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCC
T ss_pred CCCCeEeCCCCCccchhhCCCh
Confidence 4799999999999999999874
No 59
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=49.38 E-value=10 Score=30.93 Aligned_cols=55 Identities=18% Similarity=0.417 Sum_probs=34.2
Q ss_pred ccceeecccccccccCCCC---CCCCCCCCCCCCCCCCccCeeecCCcccCCcccccc
Q 013795 159 QVEMIQCCICEDWFHEEHI---GLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTY 213 (436)
Q Consensus 159 ~~~MiQC~~CEDWfH~~Cl---~~~~~~~~p~~~~~e~~~~~fIC~~C~~~~pfL~~y 213 (436)
.+.|++|-+|..=||..|+ |....+....+-.-...-.-|-|+.|..-+..|..+
T Consensus 26 ~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lLLtEe 83 (89)
T 1wil_A 26 AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEE 83 (89)
T ss_dssp SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSSSCCC
T ss_pred ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhhcchh
Confidence 4789999999999999998 332211000000111124678999997666666643
No 60
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=32.66 E-value=28 Score=23.91 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=14.6
Q ss_pred ccCHHHHHHHHHHHHHhhh
Q 013795 416 AITSDDVHQIFENLAKKRR 434 (436)
Q Consensus 416 VVTeEDIk~FFe~L~~~~r 434 (436)
+||++||+.==++.+..|+
T Consensus 6 ~Vte~DIr~QE~rV~~aR~ 24 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQVRK 24 (36)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHH
Confidence 7999999987766665554
No 61
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=31.12 E-value=22 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhcc--CCCCccCHHHHHHHHH
Q 013795 397 IADMKDEFHNFLQSF--DPSKAITSDDVHQIFE 427 (436)
Q Consensus 397 Yn~mKdkL~eFLk~F--e~gkVVTeEDIk~FFe 427 (436)
+..+|..|+.+=+.| ..|+.=+.+||+.-=+
T Consensus 6 ~~~lk~~LK~WE~~F~~~~GRkP~k~DIk~~p~ 38 (56)
T 2kmu_A 6 LRDVRERLQAWERAFRRQRGRRPSQDDVEAAPE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHcCHH
Confidence 778999999999999 8899999999886444
No 62
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=30.52 E-value=43 Score=26.11 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.9
Q ss_pred ccCHHHHHHHHHHHHH
Q 013795 416 AITSDDVHQIFENLAK 431 (436)
Q Consensus 416 VVTeEDIk~FFe~L~~ 431 (436)
-||..||++|+..|.+
T Consensus 50 ~it~~~i~~~~~~l~~ 65 (118)
T 2kd1_A 50 KLTSLHMQNYVNSLRD 65 (118)
T ss_dssp GCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 4899999999999864
No 63
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=28.42 E-value=34 Score=29.38 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhcc----------CCCCccCHHHHH
Q 013795 396 GIADMKDEFHNFLQSF----------DPSKAITSDDVH 423 (436)
Q Consensus 396 gYn~mKdkL~eFLk~F----------e~gkVVTeEDIk 423 (436)
+|..++..|++||... ..-|+||.+||.
T Consensus 69 iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~ 106 (121)
T 2ly8_A 69 IYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHH
Confidence 6888888999988874 378999999996
No 64
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=28.25 E-value=56 Score=25.27 Aligned_cols=30 Identities=3% Similarity=0.211 Sum_probs=19.6
Q ss_pred HHHHHhhhcc-C--CCCccCHHHHHHHHHHHHH
Q 013795 402 DEFHNFLQSF-D--PSKAITSDDVHQIFENLAK 431 (436)
Q Consensus 402 dkL~eFLk~F-e--~gkVVTeEDIk~FFe~L~~ 431 (436)
..|..||.++ . .=.-||..||++|+..|.+
T Consensus 33 ~~l~~~i~~~~g~~~l~~it~~~i~~~~~~l~~ 65 (116)
T 2kj5_A 33 SRIEKDIKPAIGSLKVEDVKPRHIDDVLKAVMK 65 (116)
T ss_dssp HHHHHTTSCSGGGSBSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHCCCcHhhCCHHHHHHHHHHHHH
Confidence 3455555444 2 2234899999999998864
No 65
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=27.51 E-value=46 Score=26.27 Aligned_cols=31 Identities=3% Similarity=0.133 Sum_probs=21.7
Q ss_pred HHHHHHhhhcc-CCC--CccCHHHHHHHHHHHHH
Q 013795 401 KDEFHNFLQSF-DPS--KAITSDDVHQIFENLAK 431 (436)
Q Consensus 401 KdkL~eFLk~F-e~g--kVVTeEDIk~FFe~L~~ 431 (436)
+..|..|+.++ ..- .-||..||++|+..|.+
T Consensus 32 ~~~l~~~i~~~~g~~~l~~It~~~i~~~~~~l~~ 65 (121)
T 2kkv_A 32 LRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDT 65 (121)
T ss_dssp HHHHHHHHSSSSTTSCTTCCCSGGGHHHHHHHHH
T ss_pred HHHHHhhcCchhcCCCHHHcCHHHHHHHHHHHHH
Confidence 44566667655 332 34899999999998864
No 66
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=24.66 E-value=89 Score=24.05 Aligned_cols=17 Identities=0% Similarity=0.255 Sum_probs=13.7
Q ss_pred CccCHHHHHHHHHHHHH
Q 013795 415 KAITSDDVHQIFENLAK 431 (436)
Q Consensus 415 kVVTeEDIk~FFe~L~~ 431 (436)
.-||..||++|+..|.+
T Consensus 45 ~~It~~~i~~~~~~l~~ 61 (106)
T 2khv_A 45 QDVDTKLIMKVLDPIWE 61 (106)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHH
Confidence 34899999999998753
No 67
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.37 E-value=41 Score=37.06 Aligned_cols=59 Identities=27% Similarity=0.601 Sum_probs=36.7
Q ss_pred ceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCC-----------C--CC-CCCCCCCCccCeeecCCcccCC
Q 013795 142 GVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPS-----------D--EI-PRDDEGEPVYEDFICKACSAVC 207 (436)
Q Consensus 142 g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~-----------~--~~-p~~~~~e~~~~~fIC~~C~~~~ 207 (436)
=.||.|+.| .-.++|..|..||=..--+.+.+ . .. |+..-| -..+-|..|-.++
T Consensus 14 c~yc~~~~~---------~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~---~~~~~c~~c~~~n 81 (802)
T 2xzl_A 14 CAYCGIDSA---------KCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLG---DTVLECYNCGRKN 81 (802)
T ss_dssp CTTTCCCCT---------TTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSC---SCBCCCSSSCCCC
T ss_pred CcccCCCCC---------ceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCC---CceeEeecCCCCc
Confidence 457777744 46799999999997654433311 0 01 111001 2477899999998
Q ss_pred ccccc
Q 013795 208 SFLST 212 (436)
Q Consensus 208 pfL~~ 212 (436)
-|+.-
T Consensus 82 ~f~lg 86 (802)
T 2xzl_A 82 VFLLG 86 (802)
T ss_dssp TTTEE
T ss_pred eeeee
Confidence 88774
No 68
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=24.19 E-value=33 Score=23.87 Aligned_cols=24 Identities=33% Similarity=0.869 Sum_probs=20.6
Q ss_pred eEeecCCCCCCCceEecccchhhccCCC
Q 013795 55 IFSCLSCAPEGNAGVCTACSLTCHDGHE 82 (436)
Q Consensus 55 ~~~c~~c~~~~~~~~c~~c~~~ch~~h~ 82 (436)
-|-|.+|. .-||..|...=|.+|.
T Consensus 18 ~lfC~~~~----~~iC~~C~~~~H~~H~ 41 (50)
T 2yvr_A 18 VLFCESCD----TLTCRDCQLNAHKDHQ 41 (50)
T ss_dssp CEEETTTT----EEECHHHHHTTTTTCC
T ss_pred EEEeCCCC----EEEecccCCCcCCCCc
Confidence 46788884 5899999999999999
No 69
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=24.08 E-value=80 Score=24.80 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=14.1
Q ss_pred CccCHHHHHHHHHHHHH
Q 013795 415 KAITSDDVHQIFENLAK 431 (436)
Q Consensus 415 kVVTeEDIk~FFe~L~~ 431 (436)
.-||..||++|+..|.+
T Consensus 48 ~~It~~~i~~~~~~l~~ 64 (118)
T 2kj8_A 48 QDIEPMQLLEVIRRFED 64 (118)
T ss_dssp TSCCHHHHHHHHHHHHT
T ss_pred HHCCHHHHHHHHHHHHH
Confidence 35899999999998864
No 70
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=23.61 E-value=60 Score=25.00 Aligned_cols=30 Identities=7% Similarity=0.191 Sum_probs=19.6
Q ss_pred HHHHHhhhcc-CC--CCccCHHHHHHHHHHHHH
Q 013795 402 DEFHNFLQSF-DP--SKAITSDDVHQIFENLAK 431 (436)
Q Consensus 402 dkL~eFLk~F-e~--gkVVTeEDIk~FFe~L~~ 431 (436)
..|..||.++ .. =.-||..||++|+..|.+
T Consensus 35 ~~~~~~i~~~~g~~~l~~It~~~i~~~~~~l~~ 67 (117)
T 2kkp_A 35 TVLRLHVIPTLGSIPLKKLQPADIQRLYASKLE 67 (117)
T ss_dssp HHHHHHHCCCCCTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCceEHHHCCHHHHHHHHHHHHH
Confidence 3444455554 32 234899999999998864
No 71
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.63 E-value=1.3e+02 Score=21.77 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=9.7
Q ss_pred cCeeecCCcccC
Q 013795 195 YEDFICKACSAV 206 (436)
Q Consensus 195 ~~~fIC~~C~~~ 206 (436)
-+.|+||.|-..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 578999999654
No 72
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=21.79 E-value=44 Score=36.84 Aligned_cols=60 Identities=20% Similarity=0.406 Sum_probs=37.4
Q ss_pred cceEEeeCCCCCCCCcccccceeecccccccccCCCCCCCCC-----------C--CC-CCCCCCCCccCeeecCCcccC
Q 013795 141 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPS-----------D--EI-PRDDEGEPVYEDFICKACSAV 206 (436)
Q Consensus 141 ~g~yC~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~-----------~--~~-p~~~~~e~~~~~fIC~~C~~~ 206 (436)
.=.||.|+.| .-.++|..|..||=..--+.+.+ . .. |+..-| -..+-|..|-.+
T Consensus 8 ~c~~c~~~~~---------~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~---~~~~ec~~c~~~ 75 (800)
T 2wjy_A 8 ACSYCGIHDP---------ACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLG---ETVLECYNCGCR 75 (800)
T ss_dssp SCTTTCCCCG---------GGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTC---SCBCCCTTTCCC
T ss_pred hccccCCCCC---------CeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCC---CceEEEeccCCC
Confidence 3457777744 46899999999997665443321 0 00 111111 246789999999
Q ss_pred Cccccc
Q 013795 207 CSFLST 212 (436)
Q Consensus 207 ~pfL~~ 212 (436)
+.|+.-
T Consensus 76 n~f~lg 81 (800)
T 2wjy_A 76 NVFLLG 81 (800)
T ss_dssp CTTTCE
T ss_pred ceeeee
Confidence 888774
No 73
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=21.67 E-value=15 Score=32.31 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=33.7
Q ss_pred ceEE-eeCCCCCCCCcccccceeecccccccccCCCCCCCCCC-CCCCC-CCCCCccCeeecCCcccC
Q 013795 142 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSD-EIPRD-DEGEPVYEDFICKACSAV 206 (436)
Q Consensus 142 g~yC-~C~rpYpDp~~e~~~~MiQC~~CEDWfH~~Cl~~~~~~-~~p~~-~~~e~~~~~fIC~~C~~~ 206 (436)
.-|| +|.. .+..|-|+.|-.=||..||..+-.+ .+... .. -+.|.|+.|..+
T Consensus 63 ~d~C~vC~~---------GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p----~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAE---------GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDE----NNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSCC---------CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTS----TTCCCCTTTCCC
T ss_pred CCeecccCC---------CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccC----CCCCEeecccCc
Confidence 3567 5663 3789999999999999999642110 00000 01 368999999754
No 74
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=21.63 E-value=1.2e+02 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.1
Q ss_pred HHHHHHhhhcc---CCCCccCHHHHHHHHHHHH
Q 013795 401 KDEFHNFLQSF---DPSKAITSDDVHQIFENLA 430 (436)
Q Consensus 401 KdkL~eFLk~F---e~gkVVTeEDIk~FFe~L~ 430 (436)
|.||..+|... .....++++++|+|.-.|.
T Consensus 58 k~kv~~Wl~~Ln~M~AsdeL~e~q~RqllfDle 90 (102)
T 2j9w_A 58 REKVSQWLQKLSSMSASDELDDSQVRQMLFDLE 90 (102)
T ss_dssp HHHHHHHHHHHHTSCTTCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHH
Confidence 67888999887 4578899999999987775
No 75
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=21.37 E-value=47 Score=27.25 Aligned_cols=14 Identities=50% Similarity=1.025 Sum_probs=10.9
Q ss_pred ecccccccccCCCC
Q 013795 102 WTKRNFRCDCGNSK 115 (436)
Q Consensus 102 ~~~r~f~cdcg~~~ 115 (436)
-.||-|+|.||+..
T Consensus 44 a~KRFFkC~C~~Rt 57 (92)
T 2kwq_A 44 GVKRFFKCPCGNRT 57 (92)
T ss_dssp EECEEEECTTSCEE
T ss_pred eeEEEEECCCCCce
Confidence 34799999998754
No 76
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.14 E-value=35 Score=25.28 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=9.5
Q ss_pred cCeeecCCcccC
Q 013795 195 YEDFICKACSAV 206 (436)
Q Consensus 195 ~~~fIC~~C~~~ 206 (436)
-+.|+||.|-..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 578999999643
No 77
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=21.04 E-value=99 Score=24.44 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=32.6
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHhhhcc--CCCCccCHHHHHHHHHHHHH
Q 013795 381 FLNKLGHVEKMEILNGIADMKDEFHNFLQSF--DPSKAITSDDVHQIFENLAK 431 (436)
Q Consensus 381 aL~sL~RvqaIE~l~gYn~mKdkL~eFLk~F--e~gkVVTeEDIk~FFe~L~~ 431 (436)
+|..|-+..+-.-+.+|...=..+..||... ..=..||.+||++|...|++
T Consensus 16 fl~~l~~~~s~~Ti~~Y~~~l~~f~~~l~~~~~~~l~~it~~~i~~y~~~l~~ 68 (117)
T 3nrw_A 16 YLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRG 68 (117)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHHHHHHTTCCSGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCChHHCCHHHHHHHHHHHHh
Confidence 4444435555566777765555555555443 13357999999999998864
No 78
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=20.65 E-value=58 Score=23.40 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHH----HHHHHhhhcc--CCCCccCHHHHHHHHHH
Q 013795 390 KMEILNGIADMK----DEFHNFLQSF--DPSKAITSDDVHQIFEN 428 (436)
Q Consensus 390 aIE~l~gYn~mK----dkL~eFLk~F--e~gkVVTeEDIk~FFe~ 428 (436)
.-|...++..+. ..+..+++.+ +....|+-++...++..
T Consensus 22 ~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 66 (78)
T 1k9u_A 22 LSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNA 66 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 334444444443 3344555555 33334555555555543
Done!