RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013796
(436 letters)
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 123 bits (309), Expect = 1e-32
Identities = 67/319 (21%), Positives = 128/319 (40%), Gaps = 27/319 (8%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
+APM +TD+ +RTLA + ++EM++A+ + + L P + + +Q
Sbjct: 3 VGLAPMAGYTDSAFRTLAFEWGAD-FAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQ 60
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
I GS + L++A + + Y I+LN GCP KV G G L D + + +
Sbjct: 61 IFGSEPNELSEAARILS-EKYKWIDLNAGCPVRKVVKEGAGGALLK-DLRHFRYIVRELR 118
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 250
+ + SVK R+G + ++ + IH+R + +
Sbjct: 119 KSVSGKFSVKTRLGWEKNEVEEIYRILVE-----EGVDEVFIHTRTVVQS---------- 163
Query: 251 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGH 309
+ AL + ++G I T ++ AL + G ++V R A PW
Sbjct: 164 -FTGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW-IFKQ 221
Query: 310 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 369
+ + S +R +++ ++ + + ++ T G R V ++ K L + G F
Sbjct: 222 IKDFLRSGKYSEPSREEILRTFERHLELLIKTKG-ERKAVVEMRKFLAGYTKDLKGARRF 280
Query: 370 KRKADAAFQTCKTVKSFLE 388
+ K + V+ E
Sbjct: 281 REK----VMKIEEVQILKE 295
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 84.3 bits (207), Expect = 9e-19
Identities = 43/217 (19%), Positives = 75/217 (34%), Gaps = 12/217 (5%)
Query: 94 HAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE-LANAYNYD 152
L L + +L + + PI+ + GS + + +A N
Sbjct: 68 SGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVK 127
Query: 153 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 212
I LN CP+ K G DP+ + A + VP+ VK V D
Sbjct: 128 AIELNISCPNVKHGGQAF-----GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIA 182
Query: 213 QLC-----DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 267
+ D + +++L R + + L N I P+ + + + +D
Sbjct: 183 KAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVD- 241
Query: 268 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
+ GG+ +V GA V VG A + +P+
Sbjct: 242 IPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPF 278
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 57.7 bits (138), Expect = 8e-10
Identities = 37/221 (16%), Positives = 66/221 (29%), Gaps = 14/221 (6%)
Query: 96 WLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEIN 155
+L E+++ +T Y ++ A P+ I + N ++ + + A A D +
Sbjct: 75 FLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALE 134
Query: 156 LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 215
LN CP + DP+ V + +P K V D S +
Sbjct: 135 LNLSCPHGMGERGMGL--ACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAA 192
Query: 216 -----------DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 264
+ + + L I P+ + R
Sbjct: 193 KEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARA 252
Query: 265 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPW 304
P GGI++ + L GA + V A Q+
Sbjct: 253 LPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFT 293
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 43.8 bits (102), Expect = 3e-05
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 2/136 (1%)
Query: 170 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTR 228
+G +F E + + + R+ + D + + ++
Sbjct: 182 QWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAG 241
Query: 229 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 288
II++ P +P + + L+ L IN + L +
Sbjct: 242 ATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSR 301
Query: 289 G-AHHVMVGRAAYQNP 303
G A V + R +
Sbjct: 302 GDADMVSMARPFLADA 317
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 39.2 bits (90), Expect = 7e-04
Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 5/152 (3%)
Query: 157 NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 216
+G SL +F E + + ++ R GVD Q+
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 217 FIYKVSSLSPTRHFI----IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272
+ + + I G +R + L++
Sbjct: 237 EVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLG 296
Query: 273 NGGINTVDEVNAALRKG-AHHVMVGRAAYQNP 303
G +++ + KG A + R + +P
Sbjct: 297 VGRYTDPEKMIEIVTKGYADIIGCARPSIADP 328
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 36.0 bits (82), Expect = 0.006
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 272 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 304
G + T D + G H +VG A P
Sbjct: 180 AEGNVITPDMYKRVMDLGVHCSVVGG-AITRPK 211
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 35.6 bits (81), Expect = 0.006
Identities = 23/208 (11%), Positives = 48/208 (23%), Gaps = 11/208 (5%)
Query: 100 EMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG 159
E L I+ Q E I+ + + + A + + EI
Sbjct: 9 EQLKGGIIVSCQALPGE--PLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITD 66
Query: 160 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219
P + + + + R D D + +
Sbjct: 67 LPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKE 126
Query: 220 K---------VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 270
K +S+ + +S + + +
Sbjct: 127 KYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAV 186
Query: 271 TLNGGINTVDEVNAALRKGAHHVMVGRA 298
G I++ +E G ++VG A
Sbjct: 187 IAEGKIHSPEEAKKINDLGVAGIVVGGA 214
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 33.1 bits (75), Expect = 0.050
Identities = 17/161 (10%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 146 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA--MSVIAANTNVPVSVKCRI 203
+ +I + P ++ + +A + V + + +
Sbjct: 90 GSYETLRKIASSVSIP--------ILMKDFIVKESQIDDAYNLGADTVLLIVKILTEREL 141
Query: 204 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 263
+ + + + +++ + + A GI+ + + E L+
Sbjct: 142 ESLLEYARSYGMEPLIEINDEN-DLDIALRI-GARFIGINSR-DLETLEINKENQRKLIS 198
Query: 264 DFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
P ++ GI+ +E+ + G + ++G + +NP
Sbjct: 199 MIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNP 239
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Thermotoga maritima [TaxId: 2336]}
Length = 265
Score = 32.4 bits (73), Expect = 0.077
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 117 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM 176
F++ P +L I GS + E +Y +I P P V GH V
Sbjct: 11 FISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDI---PHFPQPTVEGHSGKLVFGR 67
Query: 177 LDPKFVG 183
+ K V
Sbjct: 68 ISDKPVM 74
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId:
4081]}
Length = 364
Score = 32.2 bits (72), Expect = 0.100
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 7/162 (4%)
Query: 142 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 201
E+ A+ Y + + +G + + EA++ + V + +
Sbjct: 174 GVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISP 233
Query: 202 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 261
++ N +Y V SL+ H + P ++
Sbjct: 234 FAHYNEAGDTNPTALGLYMVESLNKYDLAYCHV-------VEPRMKTAWEKIECTESLVP 286
Query: 262 LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
+R TF + GG + D A + A V GR NP
Sbjct: 287 MRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNP 328
>d2ohwa1 d.79.8.1 (A:3-130) Uncharacterized protein YueI {Bacillus
subtilis [TaxId: 1423]}
Length = 128
Score = 30.0 bits (68), Expect = 0.19
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 255 YEYYYALLRDFPDLTFTLNGGI---NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 311
Y+ L++ ++T +NG + + + A R G +V + P + D
Sbjct: 49 YKEAEHELKNSHNVTLLINGELQYQSYSSYIQMASRYGVPFKIVSDLQFHTPLGIVIAAD 108
Query: 312 TAI 314
A+
Sbjct: 109 IAV 111
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Thale cress (Arabidopsis thaliana), OPR3
[TaxId: 3702]}
Length = 380
Score = 31.4 bits (70), Expect = 0.21
Identities = 24/179 (13%), Positives = 45/179 (25%)
Query: 125 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 184
++ G ++ L + + D IN +A F ++
Sbjct: 165 ALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIG 224
Query: 185 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 244
A V + + + ++ ++
Sbjct: 225 ASKVGVRVSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQT 284
Query: 245 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
R + LR + TF +GG N + A + A V GR NP
Sbjct: 285 ESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANP 343
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 30.9 bits (69), Expect = 0.22
Identities = 5/48 (10%), Positives = 15/48 (31%)
Query: 255 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 302
++ + + +GG ++ A + GA + +
Sbjct: 183 DLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFG 230
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 31.4 bits (70), Expect = 0.23
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 265 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 299
L ++GG+ +V AL GA V +GR
Sbjct: 304 KDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPF 338
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 31.0 bits (69), Expect = 0.26
Identities = 16/138 (11%), Positives = 28/138 (20%), Gaps = 7/138 (5%)
Query: 167 GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 226
+G S+ +F E + +A +
Sbjct: 201 RTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGE 260
Query: 227 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 286
+ + + E + +R G + A L
Sbjct: 261 LDRRGLAYL-----HFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDA-GRAQARL 314
Query: 287 RKG-AHHVMVGRAAYQNP 303
A V GR NP
Sbjct: 315 DDNTADAVAFGRPFIANP 332
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 30.5 bits (68), Expect = 0.46
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 338 ILGTYGNNRPHVRDVMKPLLHFFHSEP 364
I+G Y + ++++ L FH E
Sbjct: 448 IVGEYAERIDNADELLESFLEGFHDES 474
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 29.9 bits (66), Expect = 0.54
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 265 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298
+ L+GG+ +V AL GA V +GR
Sbjct: 277 QGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRP 310
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 29.6 bits (65), Expect = 0.75
Identities = 39/237 (16%), Positives = 73/237 (30%), Gaps = 17/237 (7%)
Query: 79 WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDN 138
N L + + + L Y + + + ++ PI I G +
Sbjct: 50 REGNPLPRYVDL--ELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAE 107
Query: 139 ---LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 195
+ K + ++ E+NL+C P V G K + E + V
Sbjct: 108 NIAMLKKIQESDFSGITELNLSC----PNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGV 163
Query: 196 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 255
+ + D + + V+S++ + + +A I P + Y
Sbjct: 164 KLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAY 223
Query: 256 EYYYALLRDF-------PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPW 304
AL P++ GGI T + L GA + +G A + P
Sbjct: 224 IKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPA 280
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 29.1 bits (64), Expect = 0.97
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 247 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298
+ + + ++GG+ T +V AL GA + +GR
Sbjct: 252 LDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRP 303
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 29.1 bits (64), Expect = 1.1
Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 6/114 (5%)
Query: 192 NTNVPVSVKCRIGVDDHDSYNQL----CDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 247
PV VK ++ L + + + + +
Sbjct: 157 PLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCE 216
Query: 248 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 301
IP + + L +GG+ T + AL GA + V R +
Sbjct: 217 IGIPTARAILEVREVLPHLPLVA--SGGVYTGTDGAKALALGADLLAVARPLLR 268
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow
(Bos taurus) [TaxId: 9913]}
Length = 284
Score = 28.9 bits (64), Expect = 1.1
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 123 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 182
EQ P V I GS L L A ++Y EI P V GH V +L+ +
Sbjct: 22 EQRPQVAVICGSGLGGLVNKLTQAQTFDYSEI---PNFPESTVPGHAGRLVFGILNGRAC 78
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 28.7 bits (63), Expect = 1.2
Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 5/144 (3%)
Query: 160 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 219
P V F V + V + I+
Sbjct: 93 PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIF 152
Query: 220 KVSSLSPTRHFII-----HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 274
+ LL+ L + L+++
Sbjct: 153 ICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGF 212
Query: 275 GINTVDEVNAALRKGAHHVMVGRA 298
GI++ ++V+AA+R GA + G A
Sbjct: 213 GISSPEQVSAAVRAGAAGAISGSA 236
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 29.0 bits (65), Expect = 1.2
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 279 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL-----TRRQV 327
+ + AA ++GA + V R Q+ +D YGA + G T+
Sbjct: 166 ITQAVAAAKQGADVIAVIRTTGQS------LLDYVPYGATTEGFGGTYATQENF 213
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F
(AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 102
Score = 27.0 bits (60), Expect = 1.9
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 176 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 233
MLD + + PV + +DD ++ + + +++ LS F
Sbjct: 1 MLDTN-MKTQLRAYLEKLTKPVELIAT--LDDSAKSAEIKELLAEIAELSDKVTFKED 55
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
{Escherichia coli [TaxId: 562]}
Length = 518
Score = 28.0 bits (62), Expect = 2.3
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 30/188 (15%)
Query: 71 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 130
S A + Y + R + W+ + A I + + +
Sbjct: 167 ISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAISSSFLQGK-------PTSLPFE 219
Query: 131 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 190
S + L AT L + + G + G++ ++V +
Sbjct: 220 KTESGMYYLPYATSLRLS--------DLGYTNKS---QSNLGITFNDLYEYV---AGLKQ 265
Query: 191 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV-----SSLSPTRHFIIHSR--KALLN-GI 242
A P +IG++ Q+ + ++ + + P R ALL GI
Sbjct: 266 AIKT-PSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGI 324
Query: 243 SPAENRTI 250
E R++
Sbjct: 325 EYIEVRSL 332
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.4 bits (58), Expect = 2.4
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 261 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS 320
L R L F++ GG + K V AA ++ G A+ G
Sbjct: 8 LERGPDGLGFSIVGGYGSPHGDLPIYVK---TVFAKGAASEDGRLKRGDQIIAVNGQSLE 64
Query: 321 GLTRRQVVE 329
G+T + V
Sbjct: 65 GVTHEEAVA 73
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 28.0 bits (61), Expect = 2.5
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 263 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 298
++ G ++ AL GA V++GRA
Sbjct: 271 VAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRA 306
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 27.9 bits (61), Expect = 2.6
Identities = 15/146 (10%), Positives = 39/146 (26%), Gaps = 5/146 (3%)
Query: 158 CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 217
+ + + + VP ++ N +
Sbjct: 86 REVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLEL 145
Query: 218 IYKVSSLSPTRHFIIHSRKA-----LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 272
+ + P ++ + L++ R + E ++ + +
Sbjct: 146 VLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAV 205
Query: 273 NGGINTVDEVNAALRKGAHHVMVGRA 298
GI+ + V + GA V++G A
Sbjct: 206 GFGISKPEHVKQIAQWGADGVIIGSA 231
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 27.4 bits (60), Expect = 2.8
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 15/126 (11%)
Query: 179 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RK 236
F +A+ V V ++ L D++ +V ++ S R
Sbjct: 118 QTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGE-ILLTSIDRD 176
Query: 237 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 296
+G R + PL A +GG ++ A GA +
Sbjct: 177 GTKSGYDTEMIRFVRPLTTLPIIA------------SGGAGKMEHFLEAFLAGADAALAA 224
Query: 297 RAAYQN 302
+
Sbjct: 225 SVFHFR 230
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 27.6 bits (60), Expect = 3.1
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 252 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNP 303
P A R PD GG+ + +E + GA V VG A + P
Sbjct: 227 PTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGP 279
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 27.6 bits (60), Expect = 3.5
Identities = 16/108 (14%), Positives = 24/108 (22%), Gaps = 7/108 (6%)
Query: 201 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 260
+ + + Y L + R A ++ + P Y
Sbjct: 249 VFNSMSGGAETGIVAQYAYVAGELE--KRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEG 306
Query: 261 LLRDF----PDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNP 303
DF G EV K + GR NP
Sbjct: 307 GSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNP 354
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 248
Score = 27.1 bits (59), Expect = 4.3
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 238 LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 297
L++ R P + + G++ + V + L++GA+ V+VG
Sbjct: 162 LVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGS 221
Query: 298 A 298
A
Sbjct: 222 A 222
>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella
typhimurium [TaxId: 90371]}
Length = 291
Score = 27.0 bits (59), Expect = 4.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 280 DEVNAALRKGAHHVMVGRAAYQNP 303
V A+ GA + GRA + +
Sbjct: 236 RAVRVAMEAGASGFLAGRAVWSSV 259
>d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 395
Score = 26.8 bits (59), Expect = 5.5
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 121 SPEQHPIVLQ---IGGSNLDNLAKATELANAYNYDEINL 156
PE + +G ++L ++ +A + + D I+
Sbjct: 99 GPEYESVWALGANLGINDLASIIEANHMCDELGLDTIST 137
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 25.6 bits (56), Expect = 6.9
Identities = 8/60 (13%), Positives = 19/60 (31%)
Query: 176 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 235
++ + PV + + D +QL + ++S L+ + I
Sbjct: 3 LISDADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDF 62
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 25.9 bits (56), Expect = 7.5
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 274 GGINTVDEVNAALRKGAHHVMVGRAAYQNP 303
G ++++ H + GR+
Sbjct: 167 TGGLALEDLPLFKGIPIHVFIAGRSIRDAA 196
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 25.8 bits (56), Expect = 9.3
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 278 TVDEVNAALRKGAHHVMVGRAAYQNP 303
+ +V L GA + VGR +Q
Sbjct: 211 FLKQVEGVLEAGALGIAVGRNVWQRR 236
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.417
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,682,259
Number of extensions: 79008
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 42
Length of query: 436
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 348
Effective length of database: 1,199,356
Effective search space: 417375888
Effective search space used: 417375888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)