BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013797
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 19/180 (10%)
Query: 186 AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGS 245
G+H + N +E RYE E + W M R A + GG DG+
Sbjct: 129 GGSHGCIHHNSVE-----RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG--FDGT 181
Query: 246 GVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEY 305
LNSAE Y PE W + M R C + N Y GG + +D+ L E YD
Sbjct: 182 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDVE 240
Query: 306 AGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKNL 360
TW + P + +S I V +Y L T + + Y D+++W +
Sbjct: 241 TETWTFVA------PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 294
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 221 PRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMD 280
PR + G + AGG+ L+ E YNP +W L ++ R +GC +
Sbjct: 15 PRGSHMAPKVGRLIYTAGGYFRQS---LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVG 71
Query: 281 NKFYVIGGRNEKDKPLTCGEAYDEY 305
Y +GGRN T A D Y
Sbjct: 72 GLLYAVGGRNNSPDGNTDSSALDCY 96
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 202 IWRYELETNNW-FKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS 260
+ RY++ET W F P R L + G +V GG+ DG L+S E Y+P+T +
Sbjct: 234 VERYDVETETWTFVAPMKHRRSALGITVHQGRI-YVLGGY--DGHTFLDSVECYDPDTDT 290
Query: 261 WDSLPGMRQRRK 272
W + M R
Sbjct: 291 WSEVTRMTSGRS 302
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 14/163 (8%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGG--HGMDGSGVLNSAERYNPETKSWD 262
Y W + ++ PR A G + GG + DG+ ++ + YNP T W
Sbjct: 45 YNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 104
Query: 263 SLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAE 322
M R +D Y +GG + + E Y+ W+ + +L
Sbjct: 105 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSV-ERYEPERDEWHLVAPML------ 157
Query: 323 TGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKNL 360
T + +AV+N LY++ N Y + N W+ +
Sbjct: 158 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 200
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 19/180 (10%)
Query: 186 AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGS 245
G+H + N +E RYE E + W M R A + GG DG+
Sbjct: 128 GGSHGCIHHNSVE-----RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG--FDGT 180
Query: 246 GVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEY 305
LNSAE Y PE W + M R C + N Y GG + +D+ L E YD
Sbjct: 181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDVE 239
Query: 306 AGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKNL 360
TW + P + +S I V +Y L T + + Y D+++W +
Sbjct: 240 TETWTFVA------PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 202 IWRYELETNNW-FKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS 260
+ RY++ET W F P R L + G +V GG+ DG L+S E Y+P+T +
Sbjct: 233 VERYDVETETWTFVAPMKHRRSALGITVHQGRI-YVLGGY--DGHTFLDSVECYDPDTDT 289
Query: 261 WDSLPGMRQRRK 272
W + M R
Sbjct: 290 WSEVTRMTSGRS 301
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 14/163 (8%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGG--HGMDGSGVLNSAERYNPETKSWD 262
Y W + ++ PR A G + GG + DG+ ++ + YNP T W
Sbjct: 44 YNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103
Query: 263 SLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAE 322
M R +D Y +GG + + E Y+ W+ + +L
Sbjct: 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSV-ERYEPERDEWHLVAPML------ 156
Query: 323 TGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKNL 360
T + +AV+N LY++ N Y + N W+ +
Sbjct: 157 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 199
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRN 290
G + AGG+ L+ E YNP +W L ++ R +GC + Y +GGRN
Sbjct: 24 GRLIYTAGGYFRQS---LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 80
Query: 291 EKDKPLTCGEAYDEY 305
T A D Y
Sbjct: 81 NSPDGNTDSSALDCY 95
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 19/180 (10%)
Query: 186 AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGS 245
G+H + + +E RYE E + W M R A + GG DG+
Sbjct: 121 GGSHGCIHHSSVE-----RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG--FDGT 173
Query: 246 GVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEY 305
LNSAE Y PE W + M R C + N Y GG + +D+ L E YD
Sbjct: 174 NRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDVE 232
Query: 306 AGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKNL 360
TW + P +S I V ++Y L T + + Y DS++W +
Sbjct: 233 TETWTFVA------PMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 286
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 14/163 (8%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGG--HGMDGSGVLNSAERYNPETKSWD 262
Y +W + ++ PR A G + GG + DG+ ++ + YNP T W
Sbjct: 37 YNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 96
Query: 263 SLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAE 322
M R +D Y +GG + + E Y+ W+ + +L
Sbjct: 97 PCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSV-ERYEPERDEWHLVAPML------ 149
Query: 323 TGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKNL 360
T + +AV+N LY++ N Y + N W+ +
Sbjct: 150 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 192
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRN 290
G + AGG+ L+ E YNP SW L ++ R +GC + Y +GGRN
Sbjct: 17 GRLIYTAGGYFRQS---LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 73
Query: 291 EKDKPLTCGEAYDEY 305
T A D Y
Sbjct: 74 NSPDGNTDSSALDCY 88
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 202 IWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW 261
+ RY++ET W MR R +V GG+ DG L+S E Y+P++ +W
Sbjct: 226 VERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGY--DGHTFLDSVECYDPDSDTW 283
Query: 262 DSLPGMRQRRK 272
+ M R
Sbjct: 284 SEVTRMTSGRS 294
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 19/180 (10%)
Query: 186 AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGS 245
G+H + + +E RYE E + W M R A + GG DG+
Sbjct: 122 GGSHGCIHHSSVE-----RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG--FDGT 174
Query: 246 GVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEY 305
LNSAE Y PE W + M R C + N Y GG + +D+ L E YD
Sbjct: 175 NRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDVE 233
Query: 306 AGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKNL 360
TW + P +S I V ++Y L T + + Y DS++W +
Sbjct: 234 TETWTFVA------PMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 287
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 14/163 (8%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGG--HGMDGSGVLNSAERYNPETKSWD 262
Y +W + ++ PR A G + GG + DG+ ++ + YNP T W
Sbjct: 38 YNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 97
Query: 263 SLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAE 322
M R +D Y +GG + + E Y+ W+ + +L
Sbjct: 98 PCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSV-ERYEPERDEWHLVAPML------ 150
Query: 323 TGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKNL 360
T + +AV+N LY++ N Y + N W+ +
Sbjct: 151 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 193
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRN 290
G + AGG+ L+ E YNP SW L ++ R +GC + Y +GGRN
Sbjct: 18 GRLIYTAGGYFRQS---LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 74
Query: 291 EKDKPLTCGEAYDEY 305
T A D Y
Sbjct: 75 NSPDGNTDSSALDCY 89
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 202 IWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW 261
+ RY++ET W MR R +V GG+ DG L+S E Y+P++ +W
Sbjct: 227 VERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGY--DGHTFLDSVECYDPDSDTW 284
Query: 262 DSLPGMRQRRK 272
+ M R
Sbjct: 285 SEVTRMTSGRS 295
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 21/181 (11%)
Query: 186 AGTHLIVSGNEIEGGVIWRYELETNNW-FKGPSMRRPRCLFASATCGTFAFVAGGHGMDG 244
G+H + N +E RYE E + W P + R R A + GG DG
Sbjct: 128 GGSHGCIHHNSVE-----RYEPERDEWHLVAPXLTR-RIGVGVAVLNRLLYAVGG--FDG 179
Query: 245 SGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDE 304
+ LNSAE Y PE W + R C + N Y GG + +D+ L E YD
Sbjct: 180 TNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDV 238
Query: 305 YAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKN 359
TW + P + +S I V +Y L T + + Y D+++W
Sbjct: 239 ETETWTFVA------PXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292
Query: 360 L 360
+
Sbjct: 293 V 293
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRN 290
G + AGG+ L+ E YNP +W L ++ R +GC + Y +GGRN
Sbjct: 24 GRLIYTAGGYFRQS---LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 80
Query: 291 EKDKPLTCGEAYDEY 305
T A D Y
Sbjct: 81 NSPDGNTDSSALDCY 95
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 16/164 (9%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGG--HGMDGSGVLNSAERYNPETKSWD 262
Y W + ++ PR A G + GG + DG+ ++ + YNP T W
Sbjct: 44 YNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWS 103
Query: 263 -SLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPA 321
P R ++ G +D Y +GG + + E Y+ W+ + P
Sbjct: 104 PCAPXSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSV-ERYEPERDEWHLVA------PX 155
Query: 322 ETGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSWKNL 360
T + +AV+N LY++ N Y + N W+ +
Sbjct: 156 LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXI 199
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 180 DKESLCAGTHLIVS--GNEIEGGVIWR---YELETNNWFKGPSMRRPRCLFASATCGTFA 234
D + CA I + G+E+ ++ Y+ T +W PSM RC
Sbjct: 93 DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLI 152
Query: 235 FVAGGH-GMDGSG-VLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRN 290
+V GG G + SG VLNS E Y+P T++W L M + RK ++ +K + +GG+N
Sbjct: 153 YVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN 210
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 25/63 (39%)
Query: 254 YNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIP 313
YN SW S G R + C + K Y GG + L E YD +W+ P
Sbjct: 75 YNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134
Query: 314 DIL 316
+L
Sbjct: 135 SML 137
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 249 NSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT 308
S +NP+ SW + ++R+ + + DN Y++GG + P+ + Y+ +
Sbjct: 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG--SQLFPIKRMDCYNVVKDS 81
Query: 309 WY 310
WY
Sbjct: 82 WY 83
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 208 ETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGM 267
E W+ M R L + T G +V+GG DGS S ERY+P W L M
Sbjct: 89 EDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG--FDGSRRHTSMERYDPNIDQWSMLGDM 146
Query: 268 RQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSP 327
+ R+ Y +GG + + L E YD + G W ++ P T +S
Sbjct: 147 QTAREGAGLVVASGVIYCLGGYDGLNI-LNSVEKYDPHTGHWTNVT------PMATKRSG 199
Query: 328 PLIAVVNNELY 338
+A++N+ +Y
Sbjct: 200 AGVALLNDHIY 210
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 15/161 (9%)
Query: 159 RHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIE--GGV--------IWRYELE 208
RH R P + D LGD ++ G L+V+ I GG + +Y+
Sbjct: 126 RHTSMERYDPNI--DQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 209 TNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMR 268
T +W M R A +V GG DG+ L+S E YN T SW ++ M
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGG--FDGTAHLSSVEAYNIRTDSWTTVTSMT 241
Query: 269 QRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTW 309
R + + Y I G + + L+ E YD +W
Sbjct: 242 TPRCYVGATVLRGRLYAIAGY-DGNSLLSSIECYDPIIDSW 281
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 22/205 (10%)
Query: 201 VIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYN---PE 257
V+ +Y+ +T W PS+ R R AS + +V GG+ DG L+S E + E
Sbjct: 32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGY--DGRSRLSSVECLDYTADE 89
Query: 258 TKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILK 317
W S+ M RR L + + YV GG + + T E YD W + D+
Sbjct: 90 DGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRH-TSMERYDPNIDQWSMLGDM-- 146
Query: 318 DFPAETGKSPPLIAVVNNELYSLETSS-----NELRVYLKDSNSWKNLGLVPVRADFNRG 372
+T + + V + +Y L N + Y + W N V A G
Sbjct: 147 ----QTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN---VTPMATKRSG 199
Query: 373 WGIAFKSLGNELLVIGASSTSSHES 397
G+A L + + V+G ++H S
Sbjct: 200 AGVAL--LNDHIYVVGGFDGTAHLS 222
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 217 SMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSG 276
SM+ PR A V GG G S + + E+Y+P+T+ W LP + ++R+ +
Sbjct: 1 SMQGPRTR-ARLGANEVLLVVGGFGSQQSPI-DVVEKYDPKTQEWSFLPSITRKRRYVAS 58
Query: 277 CYMDNKFYVIGGRNEKDK--PLTCGEAYDEYAGTWYHI 312
+ ++ YVIGG + + + + C + + G WY +
Sbjct: 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSV 96
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL 264
Y + T++W SM PRC + + G+ DG+ +L+S E Y+P SW+ +
Sbjct: 227 YNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGY--DGNSLLSSIECYDPIIDSWEVV 284
Query: 265 PGMRQRRKLCSGCYM 279
M +R C +
Sbjct: 285 TSMGTQRCDAGVCVL 299
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL 264
Y +++N WF M R G + GG+ + L++ E YN T W +
Sbjct: 129 YNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188
Query: 265 PGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLT--CGEAYDEYAGTWYHIPDI 315
M RR ++N Y +GG D PL E YD W + D+
Sbjct: 189 AEMSTRRSGAGVGVLNNLLYAVGG---HDGPLVRKSVEVYDPTTNAWRQVADM 238
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 21/191 (10%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL 264
Y+ + W + + RC F GG +GS + + + Y+P W S+
Sbjct: 35 YDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGG--FNGSLRVRTVDSYDPVKDQWTSV 92
Query: 265 PGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETG 324
MR RR ++ Y +GG + L+ EAY+ + W+H+ P T
Sbjct: 93 ANMRDRRSTLGAAVLNGLLYAVGGF-DGSTGLSSVEAYNIKSNEWFHVA------PMNTR 145
Query: 325 KSPPLIAVVNNELYSL---ETSSNE----LRVYLKDSNSWKNLGLVPVRADFNRGWGIAF 377
+S + VV LY++ + +S + + Y +N W + + R G
Sbjct: 146 RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-----GAGV 200
Query: 378 KSLGNELLVIG 388
L N L +G
Sbjct: 201 GVLNNLLYAVG 211
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 8/133 (6%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL 264
Y TN W M R + GGH DG V S E Y+P T +W +
Sbjct: 178 YNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGH--DGPLVRKSVEVYDPTTNAWRQV 235
Query: 265 PGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETG 324
M R+ C ++ YV+GG ++ L E Y+ W + + TG
Sbjct: 236 ADMNMCRRNAGVCAVNGLLYVVGG-DDGSCNLASVEYYNPTTDKWTVVSSCM-----STG 289
Query: 325 KSPPLIAVVNNEL 337
+S + V++ L
Sbjct: 290 RSYAGVTVIDKRL 302
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 248 LNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG 307
+ S E Y+ + + W + + RR YM + +GG N + T ++YD
Sbjct: 29 IRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTV-DSYDPVKD 87
Query: 308 TWYHIPDILKDFPAETGKSPPLIAVVNNELYSL-----ETSSNELRVYLKDSNSW 357
W + + ++D + G AV+N LY++ T + + Y SN W
Sbjct: 88 QWTSVAN-MRDRRSTLGA-----AVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTF-AFVAGGHGMDGS 245
G ++ GN+ + + Y+ +++W GP M+ R +SAT F GG G G
Sbjct: 237 GQIVVTGGNDAKKTSL--YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGGV 294
Query: 246 GVLNSAERYNPETKSWDSLPGMRQRRKLCS---GCY-MDNKFYVIG 287
N E Y+P +K+W SLP + L + G Y DN ++ G
Sbjct: 295 FEKN-GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 339
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 73/199 (36%), Gaps = 27/199 (13%)
Query: 210 NNWFKGPSMRRPRCLFASATCGTFAFVAGGHGM-DGSGVLNSAERYNPETKSW---DSLP 265
+ W P + PRCLF +V GG + DG L+S Y+ + W D LP
Sbjct: 77 SEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP 136
Query: 266 GMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGK 325
+ + S +MD YVIGG+ K L YD W + P +T +
Sbjct: 137 YVVYGHTVLS--HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA------PMQTAR 187
Query: 326 SPPLIAVVNNELYSLE-------TSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFK 378
S V + + TSS E VY N W P A ++
Sbjct: 188 SLFGATVHDGRIIVAAGVTDTGLTSSAE--VYSITDNKW-----APFEAFPQERSSLSLV 240
Query: 379 SLGNELLVIGASSTSSHES 397
SL L IG +T ES
Sbjct: 241 SLVGTLYAIGGFATLETES 259
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 205 YELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL 264
Y+ + W + M+ R LF + VA G + +G+ +SAE Y+ W
Sbjct: 170 YDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAG--VTDTGLTSSAEVYSITDNKWAPF 227
Query: 265 PGMRQRRKLCSGCYMDNKFYVIGG 288
Q R S + Y IGG
Sbjct: 228 EAFPQERSSLSLVSLVGTLYAIGG 251
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSG 246
G ++ GN+ + + Y+ +++W GP M+ R +SAT G G
Sbjct: 259 GQIVVTGGNDAKKTSL--YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGV 316
Query: 247 VLNSAERYNPETKSWDSLPGMRQRRKLCS---GCYM-DNKFYVIG 287
+ E Y+P +K+W SLP + L + G Y DN ++ G
Sbjct: 317 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYKSDNHAWLFG 361
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSG 246
G ++ GN+ + + Y+ +++W GP M+ R +SAT G G
Sbjct: 237 GQIVVTGGNDAKKTSL--YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGV 294
Query: 247 VLNSAERYNPETKSWDSLPGMRQRRKLCS---GCY-MDNKFYVIG 287
+ E Y+P +K+W SLP + L + G Y DN ++ G
Sbjct: 295 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 339
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 202 IWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW 261
++ Y + +W M+ PR +F A +AGG DG S E ++ +T W
Sbjct: 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSA--SVEAFDLKTNKW 234
Query: 262 DSLPGMRQRRKLCSGCYMDNKFYVIGG 288
+ + Q R S + Y IGG
Sbjct: 235 EVMTEFPQERSSISLVSLAGSLYAIGG 261
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 36/101 (35%)
Query: 209 TNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMR 268
++ W P + RCLF +V G + L+S Y+P W + +
Sbjct: 87 SSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP 146
Query: 269 QRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTW 309
+ + + Y +GG+ + K Y+ G W
Sbjct: 147 IKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--GTFAFVAGGHGMDG 244
G ++ GN+ + + Y+ +++W GP M+ R +SAT G + G H G
Sbjct: 237 GQIVVTGGNDAKKTSL--YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSH--SG 292
Query: 245 SGVLNSAERYNPETKSWDSLPGMRQRRKLCS---GCY-MDNKFYVIG 287
+ E Y+P +K+W SLP + L + G Y DN ++ G
Sbjct: 293 GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 339
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSG 246
G ++ GN+ + + Y+ +++W GP M+ R +SAT G G
Sbjct: 254 GQIVVTGGNDAKKTSL--YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGV 311
Query: 247 VLNSAERYNPETKSWDSLPGMRQRRKLCS---GCY-MDNKFYVIG 287
+ E Y+P +K+W SLP + L + G Y DN ++ G
Sbjct: 312 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 356
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSG 246
G ++ GN+ + + Y+ +++W GP M+ R +SAT G G
Sbjct: 237 GQIVVTGGNDAKKTSL--YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGV 294
Query: 247 VLNSAERYNPETKSWDSLPGMRQRRKLCS---GCY-MDNKFYVIG 287
+ E Y+P +K+W SLP + L + G Y DN ++ G
Sbjct: 295 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 339
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSG 246
G ++ GN+ + + Y+ +++W GP M+ R +SAT G G
Sbjct: 237 GQIVVTGGNDAKKTSL--YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGV 294
Query: 247 VLNSAERYNPETKSWDSLPGMRQRRKLCS---GCY-MDNKFYVIG 287
+ E Y+P +K+W SLP + L + G Y DN ++ G
Sbjct: 295 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 339
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 221 PRCLFASATCGTFAFVAGGHGMDGSG---VLNSAERYNPETKSWDSLPGMRQRRKLCSGC 277
PR SA +V GG G + G V N +YNP+T SW L
Sbjct: 55 PRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXSHAPXGXAGHVT 114
Query: 278 YMDN-KFYVIGGRNE 291
++ N K YV GG N+
Sbjct: 115 FVHNGKAYVTGGVNQ 129
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 16/152 (10%)
Query: 213 FKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRK 272
K PS R A+AT G A G G GV + + PE S+D P + +
Sbjct: 1 MKAPSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPE--SFDLQPIEVGKAR 58
Query: 273 LCSGCYMDNKFYVIG------GRNEKDKPLTCGEAYDEYA-----GTWYHIPDILKDFPA 321
L G + + +G E DK L EAY+ A + + L
Sbjct: 59 LVKGA-AKHIIHAVGPNFNKVSEVEGDKQL--AEAYESIAKIVNDNNYKSVAIPLLSTGI 115
Query: 322 ETGKSPPLIAVVNNELYSLETSSNELRVYLKD 353
+G L +N+ L +L+T+ ++ +Y +D
Sbjct: 116 FSGNKDRLTQSLNHLLTALDTTDADVAIYCRD 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,008,300
Number of Sequences: 62578
Number of extensions: 614380
Number of successful extensions: 1222
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 58
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)