Query 013797
Match_columns 436
No_of_seqs 325 out of 2935
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.5E-41 3.3E-46 346.0 31.8 320 87-434 224-568 (571)
2 PHA02713 hypothetical protein; 100.0 2.8E-39 6.1E-44 330.7 29.4 241 153-418 273-541 (557)
3 KOG4441 Proteins containing BT 100.0 3E-36 6.4E-41 307.2 26.6 230 185-435 282-522 (571)
4 PLN02153 epithiospecifier prot 100.0 5E-35 1.1E-39 284.2 32.0 260 159-433 4-310 (341)
5 PHA03098 kelch-like protein; P 100.0 2.2E-34 4.7E-39 296.5 29.9 245 153-421 265-522 (534)
6 PLN02193 nitrile-specifier pro 100.0 1.1E-33 2.4E-38 284.9 33.5 259 154-430 139-434 (470)
7 PLN02153 epithiospecifier prot 100.0 2E-33 4.3E-38 273.0 31.9 257 142-401 33-336 (341)
8 PHA02713 hypothetical protein; 100.0 1.1E-33 2.5E-38 289.5 29.0 226 190-435 260-512 (557)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 9E-33 2E-37 269.2 30.2 250 167-434 1-320 (346)
10 PLN02193 nitrile-specifier pro 100.0 2.3E-32 5E-37 275.3 31.9 254 141-401 175-465 (470)
11 PHA02790 Kelch-like protein; P 100.0 7.9E-33 1.7E-37 279.4 27.9 208 183-418 267-478 (480)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 2.3E-32 5E-37 266.3 30.0 252 142-402 18-344 (346)
13 TIGR03548 mutarot_permut cycli 100.0 3E-32 6.5E-37 262.8 28.5 227 153-392 40-314 (323)
14 TIGR03548 mutarot_permut cycli 100.0 9.4E-32 2E-36 259.4 28.9 238 182-434 8-302 (323)
15 PRK14131 N-acetylneuraminic ac 100.0 3.7E-31 8E-36 260.0 29.0 254 163-434 18-342 (376)
16 PRK14131 N-acetylneuraminic ac 100.0 1E-30 2.2E-35 256.9 30.9 253 141-401 38-365 (376)
17 PHA02790 Kelch-like protein; P 100.0 4.1E-31 9E-36 266.9 27.0 196 142-360 272-477 (480)
18 KOG4693 Uncharacterized conser 100.0 2.4E-31 5.3E-36 232.6 20.7 246 180-435 16-302 (392)
19 PHA03098 kelch-like protein; P 100.0 3.1E-30 6.8E-35 265.6 28.1 214 141-365 294-523 (534)
20 KOG4693 Uncharacterized conser 100.0 1.6E-30 3.6E-35 227.4 20.6 236 152-392 44-313 (392)
21 KOG0379 Kelch repeat-containin 99.9 2.5E-25 5.4E-30 223.8 26.6 243 182-434 65-327 (482)
22 KOG1230 Protein containing rep 99.9 6.6E-24 1.4E-28 196.4 19.9 224 187-418 78-348 (521)
23 KOG0379 Kelch repeat-containin 99.9 9.7E-23 2.1E-27 205.1 26.2 274 141-419 70-370 (482)
24 KOG4152 Host cell transcriptio 99.9 6.8E-22 1.5E-26 187.2 17.3 262 120-392 18-343 (830)
25 KOG4152 Host cell transcriptio 99.9 4.2E-21 9.2E-26 181.9 18.9 256 163-436 18-333 (830)
26 KOG1230 Protein containing rep 99.9 1.2E-20 2.5E-25 175.0 18.3 254 91-361 33-348 (521)
27 COG3055 Uncharacterized protei 99.8 1.4E-16 3E-21 146.4 22.0 240 143-392 48-360 (381)
28 COG3055 Uncharacterized protei 99.6 3.2E-14 6.9E-19 130.9 20.3 240 166-422 29-338 (381)
29 PF13964 Kelch_6: Kelch motif 99.1 1.3E-10 2.8E-15 79.0 6.6 50 221-271 1-50 (50)
30 TIGR01640 F_box_assoc_1 F-box 99.1 2E-08 4.4E-13 92.0 23.0 196 185-390 3-216 (230)
31 KOG2437 Muskelin [Signal trans 99.1 3.9E-11 8.4E-16 114.7 4.7 184 207-392 236-458 (723)
32 PF13964 Kelch_6: Kelch motif 99.0 9.6E-10 2.1E-14 74.7 6.6 47 270-316 1-47 (50)
33 PF01344 Kelch_1: Kelch motif; 98.9 2.9E-09 6.3E-14 71.3 4.5 47 270-316 1-47 (47)
34 PF01344 Kelch_1: Kelch motif; 98.8 2.7E-09 5.9E-14 71.4 3.6 47 221-268 1-47 (47)
35 TIGR01640 F_box_assoc_1 F-box 98.8 2.9E-06 6.2E-11 77.7 22.8 199 152-355 14-230 (230)
36 PF07646 Kelch_2: Kelch motif; 98.8 2.2E-08 4.7E-13 67.6 6.4 48 221-268 1-49 (49)
37 PF13415 Kelch_3: Galactose ox 98.8 1.9E-08 4E-13 68.0 6.0 49 231-279 1-49 (49)
38 PF07646 Kelch_2: Kelch motif; 98.8 2.9E-08 6.4E-13 67.0 6.4 47 270-316 1-49 (49)
39 PF07250 Glyoxal_oxid_N: Glyox 98.7 1.4E-06 3E-11 79.1 18.8 153 201-366 47-211 (243)
40 KOG2437 Muskelin [Signal trans 98.7 1.8E-08 3.8E-13 96.8 5.2 151 258-418 238-420 (723)
41 PF13418 Kelch_4: Galactose ox 98.7 2.4E-08 5.3E-13 67.4 4.5 47 270-316 1-48 (49)
42 PF13418 Kelch_4: Galactose ox 98.6 3.6E-08 7.7E-13 66.6 4.2 48 221-269 1-49 (49)
43 smart00612 Kelch Kelch domain. 98.6 7.2E-08 1.6E-12 64.3 5.2 47 233-281 1-47 (47)
44 PF13415 Kelch_3: Galactose ox 98.6 1.2E-07 2.7E-12 63.9 5.8 48 280-333 1-49 (49)
45 PF12937 F-box-like: F-box-lik 98.5 4.8E-08 1E-12 65.3 2.6 43 91-133 1-43 (47)
46 smart00612 Kelch Kelch domain. 98.4 6.3E-07 1.4E-11 59.6 5.4 47 282-335 1-47 (47)
47 PLN03215 ascorbic acid mannose 98.4 5.7E-05 1.2E-09 72.7 20.1 38 90-127 3-41 (373)
48 PF07250 Glyoxal_oxid_N: Glyox 98.4 1.2E-05 2.7E-10 73.0 14.8 146 154-317 48-210 (243)
49 PLN02772 guanylate kinase 98.3 5.9E-06 1.3E-10 79.7 11.3 84 220-307 23-110 (398)
50 PLN02772 guanylate kinase 98.2 1.5E-05 3.3E-10 77.0 11.4 84 269-355 23-110 (398)
51 PF13854 Kelch_5: Kelch motif 98.2 5.4E-06 1.2E-10 53.7 5.6 42 218-259 1-42 (42)
52 PF13854 Kelch_5: Kelch motif 98.2 5.5E-06 1.2E-10 53.7 5.3 40 267-306 1-41 (42)
53 smart00256 FBOX A Receptor for 98.1 7.6E-07 1.6E-11 57.4 1.1 39 94-132 1-39 (41)
54 KOG0281 Beta-TrCP (transducin 98.1 7.9E-05 1.7E-09 69.0 14.1 278 89-405 73-429 (499)
55 PF00646 F-box: F-box domain; 98.1 5.7E-07 1.2E-11 60.3 -0.0 43 91-133 3-45 (48)
56 PRK11138 outer membrane biogen 97.9 0.025 5.5E-07 56.1 27.8 213 151-416 129-361 (394)
57 PRK11138 outer membrane biogen 97.7 0.061 1.3E-06 53.4 26.9 198 150-388 168-383 (394)
58 PF07893 DUF1668: Protein of u 97.6 0.017 3.8E-07 56.0 21.2 120 186-314 75-216 (342)
59 PF13360 PQQ_2: PQQ-like domai 97.5 0.033 7.2E-07 50.7 21.8 180 142-358 37-237 (238)
60 PF07893 DUF1668: Protein of u 97.5 0.0042 9.2E-08 60.2 16.1 125 230-362 75-216 (342)
61 TIGR03300 assembly_YfgL outer 97.4 0.14 3.1E-06 50.4 26.6 199 150-389 153-369 (377)
62 TIGR03300 assembly_YfgL outer 97.2 0.24 5.2E-06 48.7 27.9 199 151-388 74-286 (377)
63 PF03089 RAG2: Recombination a 97.0 0.18 3.9E-06 46.3 19.6 77 215-291 81-175 (337)
64 PF13360 PQQ_2: PQQ-like domai 97.0 0.25 5.4E-06 44.8 25.7 192 184-415 33-237 (238)
65 PF05096 Glu_cyclase_2: Glutam 97.0 0.016 3.4E-07 53.2 12.4 187 186-390 54-251 (264)
66 PF08450 SGL: SMP-30/Gluconola 96.9 0.061 1.3E-06 49.5 16.1 174 187-388 11-201 (246)
67 KOG2120 SCF ubiquitin ligase, 96.6 0.00069 1.5E-08 62.3 0.7 44 90-133 97-140 (419)
68 KOG0274 Cdc4 and related F-box 96.5 0.8 1.7E-05 47.2 22.1 278 87-401 104-397 (537)
69 PF08450 SGL: SMP-30/Gluconola 96.4 0.18 3.9E-06 46.4 15.9 194 142-361 12-221 (246)
70 PF08268 FBA_3: F-box associat 96.4 0.065 1.4E-06 44.0 11.6 81 277-362 2-89 (129)
71 PRK11028 6-phosphogluconolacto 96.4 0.97 2.1E-05 43.5 25.4 233 144-404 4-258 (330)
72 PF12768 Rax2: Cortical protei 96.3 0.063 1.4E-06 50.3 11.7 122 234-362 1-130 (281)
73 KOG2055 WD40 repeat protein [G 96.3 0.28 6.1E-06 47.8 16.0 179 187-401 224-414 (514)
74 PF05096 Glu_cyclase_2: Glutam 96.1 0.098 2.1E-06 48.1 11.8 108 276-407 50-158 (264)
75 PRK11028 6-phosphogluconolacto 96.1 1.4 3.1E-05 42.3 27.1 247 141-418 46-314 (330)
76 PRK04792 tolB translocation pr 96.0 2.1 4.5E-05 43.3 22.4 146 199-361 241-390 (448)
77 PF10282 Lactonase: Lactonase, 95.9 1.2 2.6E-05 43.3 19.6 228 153-406 16-277 (345)
78 PF08268 FBA_3: F-box associat 95.9 0.081 1.7E-06 43.5 9.6 83 331-418 2-88 (129)
79 TIGR03866 PQQ_ABC_repeats PQQ- 95.8 1.6 3.5E-05 40.6 24.6 182 145-357 4-191 (300)
80 PF10282 Lactonase: Lactonase, 95.6 2.5 5.4E-05 41.1 20.6 248 140-418 47-332 (345)
81 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.4 4 8.6E-05 42.2 25.0 117 183-311 65-197 (527)
82 TIGR02800 propeller_TolB tol-p 95.3 3.4 7.4E-05 41.1 21.7 144 200-361 214-362 (417)
83 TIGR02658 TTQ_MADH_Hv methylam 95.2 3.2 6.9E-05 40.3 23.8 77 137-214 53-142 (352)
84 PRK04922 tolB translocation pr 95.2 4 8.7E-05 41.0 22.1 157 187-361 215-376 (433)
85 PF12768 Rax2: Cortical protei 95.2 0.34 7.3E-06 45.4 11.9 108 200-314 16-130 (281)
86 COG4257 Vgb Streptogramin lyas 95.1 2.6 5.6E-05 38.9 16.8 185 153-361 125-313 (353)
87 PRK00178 tolB translocation pr 95.1 4.2 9.2E-05 40.7 23.1 159 187-362 210-372 (430)
88 PF03089 RAG2: Recombination a 95.0 0.68 1.5E-05 42.6 12.7 114 283-405 40-189 (337)
89 KOG2055 WD40 repeat protein [G 95.0 0.89 1.9E-05 44.5 14.2 186 139-354 223-418 (514)
90 TIGR03866 PQQ_ABC_repeats PQQ- 94.7 3.5 7.7E-05 38.2 25.4 227 143-401 44-276 (300)
91 KOG2997 F-box protein FBX9 [Ge 94.6 0.011 2.4E-07 54.8 0.4 44 91-134 107-155 (366)
92 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.4 7.2 0.00016 40.3 25.1 208 142-356 70-336 (527)
93 COG3823 Glutamine cyclotransfe 94.2 2 4.4E-05 37.9 13.4 185 183-390 51-249 (262)
94 smart00284 OLF Olfactomedin-li 94.2 4.4 9.6E-05 37.3 16.8 153 187-356 34-211 (255)
95 cd00094 HX Hemopexin-like repe 94.2 3.7 7.9E-05 36.3 17.0 150 183-356 12-178 (194)
96 PRK05137 tolB translocation pr 94.1 7.1 0.00015 39.3 27.7 189 152-361 182-374 (435)
97 PF03178 CPSF_A: CPSF A subuni 93.9 3.2 6.8E-05 39.9 16.0 136 249-407 62-205 (321)
98 PLN02919 haloacid dehalogenase 93.7 15 0.00032 41.5 28.2 233 142-391 580-879 (1057)
99 PF02191 OLF: Olfactomedin-lik 93.5 5.4 0.00012 36.8 15.9 156 187-360 30-210 (250)
100 KOG0310 Conserved WD40 repeat- 93.4 3.5 7.7E-05 40.6 14.7 260 90-392 34-301 (487)
101 cd00200 WD40 WD40 domain, foun 93.2 6.2 0.00013 35.5 21.2 142 188-355 105-251 (289)
102 COG2706 3-carboxymuconate cycl 93.1 8.2 0.00018 36.8 27.6 241 152-418 66-331 (346)
103 PRK00178 tolB translocation pr 92.9 11 0.00024 37.7 23.2 148 151-315 222-373 (430)
104 PLN02919 haloacid dehalogenase 92.9 20 0.00043 40.6 23.2 155 187-356 694-891 (1057)
105 PRK04792 tolB translocation pr 92.9 12 0.00026 37.9 24.2 150 150-314 240-391 (448)
106 PRK02889 tolB translocation pr 92.8 12 0.00025 37.6 22.1 188 151-361 175-368 (427)
107 PRK05137 tolB translocation pr 92.7 12 0.00026 37.6 24.2 189 150-361 224-420 (435)
108 cd00216 PQQ_DH Dehydrogenases 92.4 14 0.00031 37.7 24.6 117 183-311 57-191 (488)
109 PLN03215 ascorbic acid mannose 92.0 3.5 7.6E-05 40.2 12.8 98 258-365 189-306 (373)
110 PF09910 DUF2139: Uncharacteri 91.9 11 0.00023 35.3 22.2 143 200-354 78-231 (339)
111 PRK03629 tolB translocation pr 91.8 15 0.00033 36.8 21.7 146 199-361 222-371 (429)
112 KOG0310 Conserved WD40 repeat- 91.4 5.9 0.00013 39.1 13.5 137 200-356 48-187 (487)
113 PRK04043 tolB translocation pr 90.5 21 0.00045 35.8 20.7 144 199-362 212-366 (419)
114 PF03178 CPSF_A: CPSF A subuni 90.4 2.7 5.9E-05 40.3 10.7 131 200-350 62-199 (321)
115 PRK13684 Ycf48-like protein; P 90.1 19 0.00041 34.8 19.1 177 187-391 142-323 (334)
116 PF06433 Me-amine-dh_H: Methyl 89.5 3.3 7.2E-05 39.6 10.0 196 138-356 103-323 (342)
117 COG1520 FOG: WD40-like repeat 89.4 22 0.00049 34.7 20.8 152 184-359 65-225 (370)
118 COG1520 FOG: WD40-like repeat 89.0 24 0.00052 34.5 22.5 197 142-361 69-278 (370)
119 cd00200 WD40 WD40 domain, foun 88.9 17 0.00036 32.6 21.6 143 187-356 62-210 (289)
120 PF07734 FBA_1: F-box associat 88.8 7 0.00015 33.4 10.9 82 277-362 2-92 (164)
121 cd00216 PQQ_DH Dehydrogenases 88.8 30 0.00066 35.4 24.9 205 151-359 70-327 (488)
122 KOG2321 WD40 repeat protein [G 88.7 23 0.00049 36.2 15.3 109 189-314 147-267 (703)
123 PRK04922 tolB translocation pr 88.7 28 0.00061 34.9 24.7 181 151-356 227-414 (433)
124 cd00094 HX Hemopexin-like repe 88.5 17 0.00036 32.1 16.7 141 226-391 11-168 (194)
125 PLN00181 protein SPA1-RELATED; 88.5 33 0.00071 37.5 18.4 139 189-354 546-691 (793)
126 KOG0296 Angio-associated migra 88.3 25 0.00054 33.8 19.2 143 187-356 75-223 (399)
127 PRK03629 tolB translocation pr 87.6 33 0.00071 34.4 22.6 149 151-314 222-372 (429)
128 smart00284 OLF Olfactomedin-li 87.2 24 0.00053 32.5 13.7 127 280-416 34-171 (255)
129 PLN00181 protein SPA1-RELATED; 86.5 54 0.0012 35.8 22.5 144 187-355 587-740 (793)
130 KOG0289 mRNA splicing factor [ 86.4 36 0.00077 33.6 18.2 119 225-365 351-474 (506)
131 KOG0316 Conserved WD40 repeat- 86.3 25 0.00055 31.8 13.0 135 200-356 39-176 (307)
132 PRK04043 tolB translocation pr 85.9 40 0.00088 33.7 22.1 190 150-360 211-407 (419)
133 TIGR02800 propeller_TolB tol-p 85.7 39 0.00085 33.4 24.1 147 152-314 214-363 (417)
134 KOG2321 WD40 repeat protein [G 85.5 19 0.00041 36.7 12.7 106 231-355 145-260 (703)
135 TIGR03074 PQQ_membr_DH membran 85.3 60 0.0013 35.2 19.3 118 183-312 190-353 (764)
136 COG4946 Uncharacterized protei 85.3 43 0.00093 33.5 22.2 167 127-313 263-439 (668)
137 PF02897 Peptidase_S9_N: Proly 85.1 42 0.00092 33.3 17.0 156 187-361 238-412 (414)
138 PRK01742 tolB translocation pr 84.9 45 0.00098 33.4 17.6 140 151-313 227-369 (429)
139 PF02191 OLF: Olfactomedin-lik 83.5 37 0.0008 31.3 17.4 155 183-353 74-247 (250)
140 COG4257 Vgb Streptogramin lyas 83.4 39 0.00084 31.5 20.4 185 154-365 85-273 (353)
141 KOG4378 Nuclear protein COP1 [ 82.4 37 0.00079 34.1 13.1 89 250-354 188-281 (673)
142 PRK10115 protease 2; Provision 81.8 79 0.0017 34.0 17.0 158 187-362 234-403 (686)
143 PRK01742 tolB translocation pr 81.7 60 0.0013 32.5 20.2 140 199-361 227-369 (429)
144 KOG1332 Vesicle coat complex C 81.4 43 0.00093 30.6 15.3 102 233-362 176-296 (299)
145 KOG1332 Vesicle coat complex C 80.9 45 0.00096 30.5 14.8 55 351-418 241-295 (299)
146 PF14870 PSII_BNR: Photosynthe 80.7 53 0.0011 31.2 20.0 195 183-418 67-269 (302)
147 PF12217 End_beta_propel: Cata 80.5 48 0.001 30.5 12.5 198 183-389 21-257 (367)
148 PF07734 FBA_1: F-box associat 79.9 37 0.0008 28.9 12.0 85 228-316 2-94 (164)
149 PTZ00420 coronin; Provisional 79.3 86 0.0019 32.8 16.8 150 188-360 138-300 (568)
150 COG4946 Uncharacterized protei 79.0 74 0.0016 31.9 18.7 158 184-360 232-438 (668)
151 PRK13684 Ycf48-like protein; P 77.4 72 0.0015 30.8 20.6 149 187-362 56-211 (334)
152 KOG0316 Conserved WD40 repeat- 77.2 57 0.0012 29.6 18.3 132 200-356 81-216 (307)
153 KOG0296 Angio-associated migra 75.8 79 0.0017 30.5 16.2 102 231-355 75-180 (399)
154 PLN00033 photosystem II stabil 75.7 89 0.0019 31.1 20.4 118 255-390 266-390 (398)
155 TIGR03032 conserved hypothetic 74.0 68 0.0015 30.6 11.8 104 268-390 148-260 (335)
156 COG3823 Glutamine cyclotransfe 72.7 43 0.00093 29.9 9.5 98 275-390 50-149 (262)
157 KOG1517 Guanine nucleotide bin 72.6 1.6E+02 0.0035 32.9 15.3 190 187-404 1177-1381(1387)
158 KOG0639 Transducin-like enhanc 72.2 50 0.0011 33.2 10.8 147 144-307 432-583 (705)
159 KOG0278 Serine/threonine kinas 72.1 80 0.0017 29.0 11.8 121 151-291 164-289 (334)
160 KOG3545 Olfactomedin and relat 72.0 80 0.0017 28.9 17.4 175 153-360 11-209 (249)
161 PF12217 End_beta_propel: Cata 71.1 59 0.0013 30.0 10.2 152 182-342 79-257 (367)
162 KOG0315 G-protein beta subunit 70.3 89 0.0019 28.7 20.4 189 185-401 49-242 (311)
163 KOG3881 Uncharacterized conser 67.6 1.2E+02 0.0026 29.6 12.0 145 187-354 160-321 (412)
164 PTZ00421 coronin; Provisional 67.5 1.5E+02 0.0033 30.3 20.8 145 187-355 87-247 (493)
165 KOG1036 Mitotic spindle checkp 67.1 1.1E+02 0.0024 28.9 11.3 125 250-402 36-161 (323)
166 PF02897 Peptidase_S9_N: Proly 66.8 1.4E+02 0.003 29.6 15.0 158 139-312 236-411 (414)
167 KOG4649 PQQ (pyrrolo-quinoline 66.8 1.1E+02 0.0024 28.4 13.3 89 250-358 34-130 (354)
168 PLN00033 photosystem II stabil 66.7 1.4E+02 0.0031 29.7 23.3 179 183-391 142-348 (398)
169 PRK02889 tolB translocation pr 63.7 1.6E+02 0.0036 29.4 23.2 145 199-361 175-324 (427)
170 KOG0281 Beta-TrCP (transducin 63.6 99 0.0021 29.7 10.5 110 222-354 320-429 (499)
171 KOG0292 Vesicle coat complex C 63.3 2.2E+02 0.0048 31.2 14.0 133 189-358 219-353 (1202)
172 KOG1036 Mitotic spindle checkp 63.0 1.4E+02 0.003 28.2 17.3 131 200-355 35-165 (323)
173 PF14870 PSII_BNR: Photosynthe 61.5 1.5E+02 0.0033 28.2 19.5 182 208-431 4-192 (302)
174 PF06433 Me-amine-dh_H: Methyl 61.5 92 0.002 30.1 10.2 62 152-214 67-132 (342)
175 TIGR03074 PQQ_membr_DH membran 59.0 2.7E+02 0.0059 30.4 26.3 210 142-356 195-480 (764)
176 KOG0266 WD40 repeat-containing 58.5 2.1E+02 0.0046 28.9 18.7 149 186-354 256-410 (456)
177 PF07433 DUF1513: Protein of u 56.2 1.9E+02 0.004 27.6 24.1 236 141-390 16-276 (305)
178 PTZ00421 coronin; Provisional 55.7 2.5E+02 0.0054 28.8 22.2 154 188-360 138-297 (493)
179 KOG0278 Serine/threonine kinas 55.0 1.7E+02 0.0038 26.9 15.4 131 198-352 163-296 (334)
180 KOG0306 WD40-repeat-containing 55.0 3E+02 0.0064 29.5 17.2 50 334-391 519-571 (888)
181 KOG0649 WD40 repeat protein [G 53.6 1.8E+02 0.0039 26.7 14.8 140 186-353 125-274 (325)
182 KOG0279 G protein beta subunit 53.5 1.9E+02 0.0042 27.0 16.9 143 187-356 116-265 (315)
183 PF03022 MRJP: Major royal jel 53.2 98 0.0021 29.2 9.1 81 280-362 11-106 (287)
184 KOG0315 G-protein beta subunit 52.8 1.9E+02 0.0041 26.7 20.4 213 150-391 59-279 (311)
185 COG3391 Uncharacterized conser 52.5 2.4E+02 0.0052 27.7 18.8 153 185-358 83-244 (381)
186 PF02239 Cytochrom_D1: Cytochr 51.3 1.1E+02 0.0023 30.1 9.3 189 144-359 8-208 (369)
187 KOG0274 Cdc4 and related F-box 50.0 3.2E+02 0.0069 28.4 20.8 170 198-402 309-480 (537)
188 KOG0266 WD40 repeat-containing 49.0 3E+02 0.0065 27.8 18.3 105 231-357 214-322 (456)
189 KOG0286 G-protein beta subunit 48.8 2.4E+02 0.0052 26.6 19.0 178 185-391 106-294 (343)
190 KOG0291 WD40-repeat-containing 48.5 3.8E+02 0.0082 28.8 19.5 150 184-361 358-515 (893)
191 PF13570 PQQ_3: PQQ-like domai 48.3 34 0.00074 21.1 3.6 24 330-354 17-40 (40)
192 PF03088 Str_synth: Strictosid 46.4 45 0.00097 25.3 4.5 39 344-387 36-74 (89)
193 KOG0305 Anaphase promoting com 46.3 3.4E+02 0.0074 27.7 12.0 165 200-391 197-365 (484)
194 KOG1898 Splicing factor 3b, su 45.7 4.8E+02 0.01 29.3 15.1 166 247-435 851-1029(1205)
195 KOG2048 WD40 repeat protein [G 45.3 3.9E+02 0.0085 28.1 21.6 64 333-401 439-502 (691)
196 KOG4341 F-box protein containi 44.9 9.4 0.0002 37.5 0.8 42 89-130 70-111 (483)
197 KOG0263 Transcription initiati 44.9 1.7E+02 0.0038 31.0 9.8 62 280-354 588-650 (707)
198 COG2706 3-carboxymuconate cycl 44.1 3.1E+02 0.0066 26.5 25.2 202 187-408 51-278 (346)
199 PF08662 eIF2A: Eukaryotic tra 44.0 2.2E+02 0.0048 24.9 10.1 69 187-265 71-139 (194)
200 KOG0306 WD40-repeat-containing 43.2 4.5E+02 0.0098 28.3 15.1 175 200-408 43-223 (888)
201 KOG0272 U4/U6 small nuclear ri 43.0 3.5E+02 0.0075 26.9 11.5 111 278-418 312-424 (459)
202 PF15525 DUF4652: Domain of un 42.3 2.4E+02 0.0051 24.8 10.6 69 152-222 88-162 (200)
203 KOG0289 mRNA splicing factor [ 42.1 3.7E+02 0.0079 26.9 17.2 112 187-316 358-473 (506)
204 KOG0293 WD40 repeat-containing 41.2 3.7E+02 0.008 26.7 12.3 134 201-361 292-431 (519)
205 PF07433 DUF1513: Protein of u 40.5 3.3E+02 0.0072 25.9 14.9 88 220-316 3-95 (305)
206 COG0823 TolB Periplasmic compo 40.4 4E+02 0.0086 26.8 16.6 151 152-316 218-370 (425)
207 PF03022 MRJP: Major royal jel 40.2 2.5E+02 0.0054 26.4 9.6 82 152-235 34-124 (287)
208 KOG1897 Damage-specific DNA bi 38.3 6.1E+02 0.013 28.3 16.2 127 201-347 808-936 (1096)
209 KOG0646 WD40 repeat protein [G 38.2 4.3E+02 0.0093 26.5 15.6 58 183-242 87-145 (476)
210 KOG2048 WD40 repeat protein [G 35.3 5.6E+02 0.012 27.1 22.6 88 332-434 212-300 (691)
211 KOG0263 Transcription initiati 33.7 3.9E+02 0.0085 28.5 10.3 106 184-305 542-649 (707)
212 KOG0265 U5 snRNP-specific prot 33.1 4.3E+02 0.0093 25.1 12.1 59 187-261 58-124 (338)
213 KOG0291 WD40-repeat-containing 33.0 6.6E+02 0.014 27.1 23.9 181 188-401 319-505 (893)
214 PF01011 PQQ: PQQ enzyme repea 32.8 1.1E+02 0.0024 18.6 4.1 25 335-360 1-27 (38)
215 PF13088 BNR_2: BNR repeat-lik 31.4 4.1E+02 0.0088 24.2 12.0 190 186-386 57-275 (275)
216 PF14583 Pectate_lyase22: Olig 31.0 3.1E+02 0.0066 27.1 8.6 236 150-407 58-329 (386)
217 PF04616 Glyco_hydro_43: Glyco 30.0 4.4E+02 0.0095 24.2 10.2 159 182-340 14-195 (286)
218 KOG0282 mRNA splicing factor [ 28.9 4.4E+02 0.0096 26.6 9.2 190 145-354 273-463 (503)
219 PF09910 DUF2139: Uncharacteri 27.9 5.3E+02 0.012 24.5 18.6 143 146-306 72-231 (339)
220 KOG4649 PQQ (pyrrolo-quinoline 27.3 5.2E+02 0.011 24.1 16.7 129 199-355 32-167 (354)
221 KOG0299 U3 snoRNP-associated p 26.9 6.6E+02 0.014 25.3 18.7 147 183-356 209-359 (479)
222 PTZ00420 coronin; Provisional 26.0 7.9E+02 0.017 25.8 19.2 23 334-356 178-200 (568)
223 PF08662 eIF2A: Eukaryotic tra 25.5 4.5E+02 0.0098 22.9 9.2 64 231-306 71-134 (194)
224 COG4447 Uncharacterized protei 25.0 5.7E+02 0.012 24.1 8.7 114 226-361 49-164 (339)
225 PF14583 Pectate_lyase22: Olig 24.3 4.2E+02 0.009 26.2 8.2 191 135-343 86-302 (386)
226 KOG0279 G protein beta subunit 24.1 6.1E+02 0.013 23.9 12.3 64 230-308 202-265 (315)
227 KOG0265 U5 snRNP-specific prot 24.1 6.3E+02 0.014 24.0 12.4 99 231-356 58-166 (338)
228 KOG3545 Olfactomedin and relat 24.0 5.7E+02 0.012 23.5 14.4 90 251-362 12-108 (249)
229 smart00564 PQQ beta-propeller 23.6 1.5E+02 0.0033 16.8 3.5 23 332-355 4-26 (33)
230 KOG0272 U4/U6 small nuclear ri 23.4 7.5E+02 0.016 24.6 12.4 112 230-364 313-427 (459)
231 KOG0649 WD40 repeat protein [G 23.1 6E+02 0.013 23.4 15.4 133 210-360 99-242 (325)
232 KOG0308 Conserved WD40 repeat- 22.6 9.4E+02 0.02 25.5 12.0 134 200-354 95-244 (735)
233 TIGR03032 conserved hypothetic 22.4 4.6E+02 0.01 25.2 7.8 72 251-342 187-259 (335)
234 KOG0308 Conserved WD40 repeat- 21.0 3.3E+02 0.0072 28.6 7.0 71 279-355 128-203 (735)
235 KOG4499 Ca2+-binding protein R 20.5 6.8E+02 0.015 23.1 9.3 32 334-365 222-253 (310)
236 COG3386 Gluconolactonase [Carb 20.4 7.5E+02 0.016 23.5 22.1 211 187-436 36-265 (307)
237 KOG0640 mRNA cleavage stimulat 20.2 7.7E+02 0.017 23.6 12.0 105 188-308 228-338 (430)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=345.97 Aligned_cols=320 Identities=22% Similarity=0.308 Sum_probs=254.4
Q ss_pred CCCCCCCChHHHHHHhhccCCcccccccccccH-------hhhhhhccc-hhHHHHhhcC-ccCCeEEEeccC------C
Q 013797 87 DYSFVPSLSDELEVLIVARVPRAEYWKFYLLNK-------RFLSLLKSG-ELFKIRREIG-FREPSVFMLASG------D 151 (436)
Q Consensus 87 ~~~~~~~LPddl~~~ILarLP~~~l~~~~~Vck-------~w~~li~s~-~f~~~~~~~~-~~~~~l~~~~~~------~ 151 (436)
....+|-||...+..++...+ +.+-...|+ .+..+-... .....+.... .....++++++- .
T Consensus 224 ~~vr~~ll~~~~l~~~v~~~~---~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~ 300 (571)
T KOG4441|consen 224 EAVRLPLLPPQFLVEIVESEP---LIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSL 300 (571)
T ss_pred HhcCccCCCHHHHHHHHhhhh---hhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCccc
Confidence 344567888888877776665 222112222 222221111 1111111111 334556666552 2
Q ss_pred CeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecC-C---CeEEEEECCCCCEEeCCCCCCCCcccEE
Q 013797 152 SSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIE-G---GVIWRYELETNNWFKGPSMRRPRCLFAS 227 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~-~---~~v~~ydp~t~~W~~l~~~p~~r~~~~~ 227 (436)
..+..|||.++.|..+++||.++.... +++++|.||++||.+. . +.+++|||.+++|..+++|..+|..+++
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~----~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v 376 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVG----VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGV 376 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccccccc----EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccccee
Confidence 578899999999999999998887443 8899999999999873 2 7999999999999999999999999999
Q ss_pred EEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC
Q 013797 228 ATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG 307 (436)
Q Consensus 228 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~ 307 (436)
++++|.||++||.++.. .++++++|||.+++|+.+++|+.+|..+++++++|+||++||.++....++.+++|||.++
T Consensus 377 ~~l~g~iYavGG~dg~~--~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 377 AVLDGKLYAVGGFDGEK--SLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred EEECCEEEEEecccccc--ccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 99999999999999755 7899999999999999999999999999999999999999998877668899999999999
Q ss_pred cEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC-----CeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCC
Q 013797 308 TWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS-----NELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGN 382 (436)
Q Consensus 308 ~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~-----~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~ 382 (436)
+|+.+++|+ .+|.++++++++++||++||.. ..+++|||.+++|+.++.|+.+ +...+++ ..++
T Consensus 455 ~W~~~~~M~------~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~g~~--~~~~ 523 (571)
T KOG4441|consen 455 TWTLIAPMN------TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAVGVV--VLGG 523 (571)
T ss_pred ceeecCCcc------cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccccEE--EECC
Confidence 999999998 7899999999999999999963 3599999999999999877643 4555555 8999
Q ss_pred EEEEEcCCCC-CCCCcEEEEeecCCCCCCccCcEEeecCCCCCCceeeeeEEe
Q 013797 383 ELLVIGASST-SSHESMAIYTCCPSSDAGELQWRLLECGKRPLSHFIHNCSVM 434 (436)
Q Consensus 383 ~l~v~GG~~~-~~~~~~~~y~~~p~~d~~~~~W~~l~~~~~~~~~~~~~~~~~ 434 (436)
+||++||.++ ..+..+++| ||++| +|+.... +...+...+|+++
T Consensus 524 ~ly~vGG~~~~~~l~~ve~y--dp~~d----~W~~~~~--~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECY--DPETD----TWTEVTE--PESGRGGAGVAVI 568 (571)
T ss_pred EEEEEecccCccccceeEEc--CCCCC----ceeeCCC--ccccccCcceEEe
Confidence 9999999888 778899999 55555 9999984 4555555555554
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=330.72 Aligned_cols=241 Identities=17% Similarity=0.313 Sum_probs=208.1
Q ss_pred eEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecC----CCeEEEEECCCCCEEeCCCCCCCCcccEEE
Q 013797 153 SWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIE----GGVIWRYELETNNWFKGPSMRRPRCLFASA 228 (436)
Q Consensus 153 ~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~----~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~ 228 (436)
.+++|||.+++|..+++||.++..+ ++++.++.||++||... .+.+++|||.+++|..+++|+.+|..++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~----~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINY----ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccce----EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 5789999999999999999887533 47888999999999642 268999999999999999999999999999
Q ss_pred EeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCC---------------
Q 013797 229 TCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKD--------------- 293 (436)
Q Consensus 229 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~--------------- 293 (436)
+++++||++||.++.. ..+++++|||.+++|+.+++||.+|..+++++++|+||++||.++..
T Consensus 349 ~~~g~IYviGG~~~~~--~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTN--VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCC--CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 9999999999986543 57789999999999999999999999999999999999999976421
Q ss_pred --CcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC------CeEEEEECCC-CcEEEcccCC
Q 013797 294 --KPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS------NELRVYLKDS-NSWKNLGLVP 364 (436)
Q Consensus 294 --~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~------~~i~~yd~~~-~~W~~v~~~p 364 (436)
...+.+++|||.+++|+.+++|+ .+|..+++++++|+||++||.. ..+++|||++ ++|+.+++||
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~------~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFW------TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCC------cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 12578999999999999999998 6788899999999999999853 3579999999 8999999887
Q ss_pred CccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCCCCccCcEEee
Q 013797 365 VRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSDAGELQWRLLE 418 (436)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W~~l~ 418 (436)
.+ +..++++ +++|+||++||.++. ..+++| |+.+++|+.+.
T Consensus 501 ~~---r~~~~~~--~~~~~iyv~Gg~~~~--~~~e~y------d~~~~~W~~~~ 541 (557)
T PHA02713 501 SR---LSALHTI--LHDNTIMMLHCYESY--MLQDTF------NVYTYEWNHIC 541 (557)
T ss_pred cc---cccceeE--EECCEEEEEeeecce--eehhhc------Ccccccccchh
Confidence 53 5555555 899999999998752 367888 55666999998
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3e-36 Score=307.24 Aligned_cols=230 Identities=26% Similarity=0.459 Sum_probs=204.3
Q ss_pred EeCCEEEEEceecC----CCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC
Q 013797 185 CAGTHLIVSGNEIE----GGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS 260 (436)
Q Consensus 185 ~~~~~iyv~GG~~~----~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 260 (436)
...+.||++||... ...++.|||.+++|..+++||.+|..+++++++++||++||.+. +...++++++||+.+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccC-CCcccceEEEecCCCCc
Confidence 56788999999875 27899999999999999999999999999999999999999984 22378999999999999
Q ss_pred eEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEE
Q 013797 261 WDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSL 340 (436)
Q Consensus 261 W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~ 340 (436)
|+.+++|..+|..+++++++|+||++||.++.. .++++++||+.+++|+.+++|+ ..|+++++++++|+||++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~------~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPML------TRRSGHGVAVLGGKLYII 433 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCCC------cceeeeEEEEECCEEEEE
Confidence 999999999999999999999999999999776 8899999999999999999998 689999999999999999
Q ss_pred ec------CCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCC-CCCCcEEEEeecCCCCCCccC
Q 013797 341 ET------SSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASST-SSHESMAIYTCCPSSDAGELQ 413 (436)
Q Consensus 341 gg------~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~-~~~~~~~~y~~~p~~d~~~~~ 413 (436)
|| ..+++.+|||.+++|+.+++|+. +|.+++++ .++++||++||.+. .....++.| |+++++
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~---~R~~~g~a--~~~~~iYvvGG~~~~~~~~~VE~y------dp~~~~ 502 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNT---RRSGFGVA--VLNGKIYVVGGFDGTSALSSVERY------DPETNQ 502 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCccc---ccccceEE--EECCEEEEECCccCCCccceEEEE------cCCCCc
Confidence 98 35689999999999999988875 46666655 89999999999987 455667888 455559
Q ss_pred cEEeecCCCCCCceeeeeEEee
Q 013797 414 WRLLECGKRPLSHFIHNCSVMV 435 (436)
Q Consensus 414 W~~l~~~~~~~~~~~~~~~~~~ 435 (436)
|+.+. +++.+|..+++++++
T Consensus 503 W~~v~--~m~~~rs~~g~~~~~ 522 (571)
T KOG4441|consen 503 WTMVA--PMTSPRSAVGVVVLG 522 (571)
T ss_pred eeEcc--cCccccccccEEEEC
Confidence 99997 678888888887764
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5e-35 Score=284.16 Aligned_cols=260 Identities=18% Similarity=0.292 Sum_probs=197.5
Q ss_pred cCCCCeEeCCC----CCCCCCccCCCeeeEEeCCEEEEEceecCC-----CeEEEEECCCCCEEeCCCCC-CCC---ccc
Q 013797 159 RHFQTRRKLPE----LPSDPCFKLGDKESLCAGTHLIVSGNEIEG-----GVIWRYELETNNWFKGPSMR-RPR---CLF 225 (436)
Q Consensus 159 p~~~~W~~l~~----~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~-----~~v~~ydp~t~~W~~l~~~p-~~r---~~~ 225 (436)
+...+|.++.+ +|.++..+ +++++++.|||+||.... +++++||+.+++|.++++++ .|| ..|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h----~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSH----GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcc----eEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 35678998877 56565433 478889999999997431 58999999999999998764 344 367
Q ss_pred EEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCC-----ccCCcceeEEEECCEEEEEeccCCCC-----Cc
Q 013797 226 ASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGM-----RQRRKLCSGCYMDNKFYVIGGRNEKD-----KP 295 (436)
Q Consensus 226 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~g~iyv~gG~~~~~-----~~ 295 (436)
++++++++||++||..... ..+++++||+.+++|+.+++| |.+|..|++++++++|||+||....+ ..
T Consensus 80 ~~~~~~~~iyv~GG~~~~~--~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKR--EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred EEEEECCEEEEECCCCCCC--ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcc
Confidence 8889999999999986543 567899999999999999877 78899999999999999999986432 13
Q ss_pred CCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-------------CCeEEEEECCCCcEEEccc
Q 013797 296 LTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS-------------SNELRVYLKDSNSWKNLGL 362 (436)
Q Consensus 296 ~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~-------------~~~i~~yd~~~~~W~~v~~ 362 (436)
.+++++||+++++|+.++++.. .+.+|.++++++++++||++||. .+++++||+.+++|++++.
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDPGE---NFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cceEEEEECCCCeEeeCCCCCC---CCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 4689999999999999987642 12578889999999999999873 3579999999999999976
Q ss_pred CCCccCCCCCceEEEEEeCCEEEEEcCCCCC--------CCCcEEEEeecCCCCCCccCcEEeec---CCCCCCceeeee
Q 013797 363 VPVRADFNRGWGIAFKSLGNELLVIGASSTS--------SHESMAIYTCCPSSDAGELQWRLLEC---GKRPLSHFIHNC 431 (436)
Q Consensus 363 ~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~y~~~p~~d~~~~~W~~l~~---~~~~~~~~~~~~ 431 (436)
....+.+|..++++ .++++||||||.... .....++|.|||+++ +|+++.. .++|..+..+++
T Consensus 235 ~g~~P~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~----~W~~~~~~~~~~~pr~~~~~~~ 308 (341)
T PLN02153 235 TGAKPSARSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL----VWEKLGECGEPAMPRGWTAYTT 308 (341)
T ss_pred cCCCCCCcceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCcc----EEEeccCCCCCCCCCccccccc
Confidence 44333445554444 789999999997421 111224566676555 9999973 245555554444
Q ss_pred EE
Q 013797 432 SV 433 (436)
Q Consensus 432 ~~ 433 (436)
+.
T Consensus 309 ~~ 310 (341)
T PLN02153 309 AT 310 (341)
T ss_pred cc
Confidence 43
No 5
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=296.49 Aligned_cols=245 Identities=18% Similarity=0.258 Sum_probs=204.1
Q ss_pred eEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCC----CeEEEEECCCCCEEeCCCCCCCCcccEEE
Q 013797 153 SWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEG----GVIWRYELETNNWFKGPSMRRPRCLFASA 228 (436)
Q Consensus 153 ~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~----~~v~~ydp~t~~W~~l~~~p~~r~~~~~~ 228 (436)
....|++..++|..+++++.... +++++.++.||++||.... +.+++||+.+++|..+++++.+|..|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~ 339 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYC-----FGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT 339 (534)
T ss_pred eeeecchhhhhcccccCcccccc-----ceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE
Confidence 34568888889998876653322 2478899999999997543 57999999999999999999999999999
Q ss_pred EeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCc
Q 013797 229 TCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT 308 (436)
Q Consensus 229 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~ 308 (436)
+++++||++||..... ..+++++||+.+++|+.+++||.+|..+++++++++||++||....+...+.+++||+.+++
T Consensus 340 ~~~~~lyv~GG~~~~~--~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 340 VFNNRIYVIGGIYNSI--SLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred EECCEEEEEeCCCCCE--ecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 9999999999987433 57889999999999999999999999999999999999999976554457899999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC--------CeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEe
Q 013797 309 WYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS--------NELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSL 380 (436)
Q Consensus 309 W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~--------~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~ 380 (436)
|+.++++| .+|.++++++.+++||++||.. +.+++||+++++|+.++.++.+ +..++++ ..
T Consensus 418 W~~~~~~p------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---r~~~~~~--~~ 486 (534)
T PHA03098 418 WSKGSPLP------ISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP---RINASLC--IF 486 (534)
T ss_pred eeecCCCC------ccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc---cccceEE--EE
Confidence 99999887 6788899999999999999852 3499999999999999877643 4444443 67
Q ss_pred CCEEEEEcCCCC-CCCCcEEEEeecCCCCCCccCcEEeecCC
Q 013797 381 GNELLVIGASST-SSHESMAIYTCCPSSDAGELQWRLLECGK 421 (436)
Q Consensus 381 ~~~l~v~GG~~~-~~~~~~~~y~~~p~~d~~~~~W~~l~~~~ 421 (436)
+++|||+||... .....+++| | .++++|+.++.+|
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~y--d----~~~~~W~~~~~~p 522 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVY--D----DKTNTWTLFCKFP 522 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEE--e----CCCCEEEecCCCc
Confidence 999999999876 335667777 4 5555999998654
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.1e-33 Score=284.87 Aligned_cols=259 Identities=17% Similarity=0.280 Sum_probs=201.4
Q ss_pred EEEEecCC----CCeEeCCCC---CCCCCccCCCeeeEEeCCEEEEEceecCC-----CeEEEEECCCCCEEeCCCC---
Q 013797 154 WWAFDRHF----QTRRKLPEL---PSDPCFKLGDKESLCAGTHLIVSGNEIEG-----GVIWRYELETNNWFKGPSM--- 218 (436)
Q Consensus 154 ~~~~dp~~----~~W~~l~~~---~~~~~~~~~~~~~~~~~~~iyv~GG~~~~-----~~v~~ydp~t~~W~~l~~~--- 218 (436)
.+.++|.+ ++|.++.++ |.+|.. ++++.+++.||++||.... +++++||+.+++|..++++
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~----h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~ 214 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCS----HGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDV 214 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccc----cEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCC
Confidence 45557755 899998874 445443 3477889999999996421 5799999999999998753
Q ss_pred CC-CCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCC---ccCCcceeEEEECCEEEEEeccCCCCC
Q 013797 219 RR-PRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGM---RQRRKLCSGCYMDNKFYVIGGRNEKDK 294 (436)
Q Consensus 219 p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~g~iyv~gG~~~~~~ 294 (436)
|. .|..|++++++++||++||..... .++++++||+.+++|+.++++ |.+|..|++++++++||++||.+...
T Consensus 215 P~~~~~~~~~v~~~~~lYvfGG~~~~~--~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~- 291 (470)
T PLN02193 215 PHLSCLGVRMVSIGSTLYVFGGRDASR--QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA- 291 (470)
T ss_pred CCCcccceEEEEECCEEEEECCCCCCC--CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-
Confidence 33 246788889999999999987543 578999999999999999887 78999999999999999999987654
Q ss_pred cCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC----CeEEEEECCCCcEEEcccCCCccCCC
Q 013797 295 PLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS----NELRVYLKDSNSWKNLGLVPVRADFN 370 (436)
Q Consensus 295 ~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~----~~i~~yd~~~~~W~~v~~~p~~~~~~ 370 (436)
..+++++||+.+++|+.+++.. ..+.+|.++++++++++||++||.. +++++||+++++|++++.++..+.+|
T Consensus 292 ~~~~~~~yd~~t~~W~~~~~~~---~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R 368 (470)
T PLN02193 292 RLKTLDSYNIVDKKWFHCSTPG---DSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER 368 (470)
T ss_pred CcceEEEEECCCCEEEeCCCCC---CCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc
Confidence 6788999999999999987532 1136788999999999999999853 68999999999999998764444556
Q ss_pred CCceEEEEEeCCEEEEEcCCCC-C---------CCCcEEEEeecCCCCCCccCcEEeecCC----CCCCceeee
Q 013797 371 RGWGIAFKSLGNELLVIGASST-S---------SHESMAIYTCCPSSDAGELQWRLLECGK----RPLSHFIHN 430 (436)
Q Consensus 371 ~~~~~~~~~~~~~l~v~GG~~~-~---------~~~~~~~y~~~p~~d~~~~~W~~l~~~~----~~~~~~~~~ 430 (436)
..++++ .++++|||+||... . ..++ +|.|||+ +.+|++++.++ .|.+|..++
T Consensus 369 ~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~nd--v~~~D~~----t~~W~~~~~~~~~~~~P~~R~~~~ 434 (470)
T PLN02193 369 SVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDG--TFALDTE----TLQWERLDKFGEEEETPSSRGWTA 434 (470)
T ss_pred ceeEEE--EECCEEEEECCccCCccccccCccceecc--EEEEEcC----cCEEEEcccCCCCCCCCCCCcccc
Confidence 555444 88999999999753 1 1123 4444654 55999998433 477776664
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2e-33 Score=272.97 Aligned_cols=257 Identities=20% Similarity=0.275 Sum_probs=194.4
Q ss_pred CeEEEeccC-------CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCC---CeEEEEECCCCC
Q 013797 142 PSVFMLASG-------DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEG---GVIWRYELETNN 211 (436)
Q Consensus 142 ~~l~~~~~~-------~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~---~~v~~ydp~t~~ 211 (436)
..+|++.+. .+.+++||+.+++|..+++++..+......+++++++++||++||.... +++++||+.+++
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 456666542 2478999999999999988764332222234578889999999996433 589999999999
Q ss_pred EEeCCCC-----CCCCcccEEEEeCCEEEEEcCcCCCC----CCccceEEEEeCCCCCeEeCCCCc---cCCcceeEEEE
Q 013797 212 WFKGPSM-----RRPRCLFASATCGTFAFVAGGHGMDG----SGVLNSAERYNPETKSWDSLPGMR---QRRKLCSGCYM 279 (436)
Q Consensus 212 W~~l~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~~yd~~t~~W~~~~~~p---~~r~~~~~~~~ 279 (436)
|+.++++ |.+|..|++++++++|||+||....+ ....+++++||+.+++|+.++.+. .+|..++++++
T Consensus 113 W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~ 192 (341)
T PLN02153 113 WTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV 192 (341)
T ss_pred EEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE
Confidence 9999887 78999999999999999999986432 113568999999999999997764 68888999999
Q ss_pred CCEEEEEeccCCC-------CCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC---------
Q 013797 280 DNKFYVIGGRNEK-------DKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS--------- 343 (436)
Q Consensus 280 ~g~iyv~gG~~~~-------~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~--------- 343 (436)
+++||++||.... ....+++++||+.+++|++++... ..|.+|..+++++++++||++||.
T Consensus 193 ~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g---~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 193 QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG---AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC---CCCCCcceeeeEEECCEEEEECcccCCcccccc
Confidence 9999999986421 113578999999999999997532 113678899999999999999995
Q ss_pred -----CCeEEEEECCCCcEEEcccC--CCccCCCCCceEEEEEeCCEEEEEcCCCC--CCCCcEEEE
Q 013797 344 -----SNELRVYLKDSNSWKNLGLV--PVRADFNRGWGIAFKSLGNELLVIGASST--SSHESMAIY 401 (436)
Q Consensus 344 -----~~~i~~yd~~~~~W~~v~~~--p~~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~y 401 (436)
.+++++||+++++|+.+... |..+..+..++++.+..+++|||+||.+. ....++..|
T Consensus 270 ~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~ 336 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFY 336 (341)
T ss_pred ccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEE
Confidence 24799999999999999643 22222233334443344569999999976 234455444
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=289.47 Aligned_cols=226 Identities=20% Similarity=0.258 Sum_probs=187.1
Q ss_pred EEEEceecC--CCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCC
Q 013797 190 LIVSGNEIE--GGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGM 267 (436)
Q Consensus 190 iyv~GG~~~--~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 267 (436)
|++.||... ...+++|||.+++|..+++||.+|..+++++++++||++||..... ...+++++||+.+++|..+++|
T Consensus 260 l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~-~~~~~v~~Yd~~~n~W~~~~~m 338 (557)
T PHA02713 260 LVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNN-PSLNKVYKINIENKIHVELPPM 338 (557)
T ss_pred EEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCC-CccceEEEEECCCCeEeeCCCC
Confidence 455555321 2468999999999999999999999999999999999999975321 2468899999999999999999
Q ss_pred ccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC---
Q 013797 268 RQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS--- 344 (436)
Q Consensus 268 p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~--- 344 (436)
|.+|..+++++++|+||++||.++.. ..+.+++||+.+++|+.+++|| .+|..+++++++|+||++||..
T Consensus 339 ~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp------~~r~~~~~~~~~g~IYviGG~~~~~ 411 (557)
T PHA02713 339 IKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMP------IALSSYGMCVLDQYIYIIGGRTEHI 411 (557)
T ss_pred cchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCC------cccccccEEEECCEEEEEeCCCccc
Confidence 99999999999999999999987554 5778999999999999999998 6888899999999999999853
Q ss_pred --------------------CeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCC-CC-CCcEEEEe
Q 013797 345 --------------------NELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASST-SS-HESMAIYT 402 (436)
Q Consensus 345 --------------------~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~-~~-~~~~~~y~ 402 (436)
+.+++|||++++|+.+++|+.+ +..++++ +++|+|||+||.++ .. ...+++|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~---r~~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Y- 485 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG---TIRPGVV--SHKDDIYVVCDIKDEKNVKTCIFRY- 485 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCeEeecCCCCcc---cccCcEE--EECCEEEEEeCCCCCCccceeEEEe-
Confidence 4699999999999999887754 4455554 89999999999865 21 2345666
Q ss_pred ecCCCCCCccCcEEeecCCCCCCceeeeeEEee
Q 013797 403 CCPSSDAGELQWRLLECGKRPLSHFIHNCSVMV 435 (436)
Q Consensus 403 ~~p~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~ 435 (436)
||+++ ++|+.++ ++|.+|..+++++++
T Consensus 486 -dp~~~---~~W~~~~--~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 486 -NTNTY---NGWELIT--TTESRLSALHTILHD 512 (557)
T ss_pred -cCCCC---CCeeEcc--ccCcccccceeEEEC
Confidence 65540 4999999 678899988888764
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=9e-33 Score=269.19 Aligned_cols=250 Identities=21% Similarity=0.277 Sum_probs=188.8
Q ss_pred CCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEEC--CCCCEEeCCCCC-CCCcccEEEEeCCEEEEEcCcCCC
Q 013797 167 LPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYEL--ETNNWFKGPSMR-RPRCLFASATCGTFAFVAGGHGMD 243 (436)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp--~t~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~ 243 (436)
+|+||.++... +++++++.|||+||.. .+.+++||+ .+++|.++++|| .+|..+++++++++|||+||....
T Consensus 1 ~~~lp~~~~~~----~~~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~ 75 (346)
T TIGR03547 1 LPDLPVGFKNG----TGAIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKA 75 (346)
T ss_pred CCCCCccccCc----eEEEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCC
Confidence 46777766543 2668899999999963 468999996 678999999999 589999999999999999998532
Q ss_pred C----CCccceEEEEeCCCCCeEeCC-CCccCCcceeEE-EECCEEEEEeccCCCC------------------------
Q 013797 244 G----SGVLNSAERYNPETKSWDSLP-GMRQRRKLCSGC-YMDNKFYVIGGRNEKD------------------------ 293 (436)
Q Consensus 244 ~----~~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~g~iyv~gG~~~~~------------------------ 293 (436)
. ...++++++||+.+++|+.++ ++|..|..++++ +++++||++||.+...
T Consensus 76 ~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T TIGR03547 76 NSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAA 155 (346)
T ss_pred CCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHH
Confidence 1 114678999999999999996 456777777666 7899999999975320
Q ss_pred ---------CcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC------CeEEEEE--CCCCc
Q 013797 294 ---------KPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS------NELRVYL--KDSNS 356 (436)
Q Consensus 294 ---------~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~------~~i~~yd--~~~~~ 356 (436)
...+.+++||+.+++|+.+++||. .+|.++++++++++||++||.. ..++.|| +++++
T Consensus 156 ~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~ 230 (346)
T TIGR03547 156 YFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPF-----LGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLE 230 (346)
T ss_pred HhCCChhHcCccceEEEEECCCCceeECccCCC-----CcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCce
Confidence 013789999999999999999872 3678889999999999999852 2466665 46779
Q ss_pred EEEcccCCCccCC--CCCceEEEEEeCCEEEEEcCCCCC------------------CCCcEEEEeecCCCCCCccCcEE
Q 013797 357 WKNLGLVPVRADF--NRGWGIAFKSLGNELLVIGASSTS------------------SHESMAIYTCCPSSDAGELQWRL 416 (436)
Q Consensus 357 W~~v~~~p~~~~~--~~~~~~~~~~~~~~l~v~GG~~~~------------------~~~~~~~y~~~p~~d~~~~~W~~ 416 (436)
|++++.||.+... ....++.+++++++|||+||.... ....+++| +|+ +++|+.
T Consensus 231 W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y--d~~----~~~W~~ 304 (346)
T TIGR03547 231 WNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY--ALD----NGKWSK 304 (346)
T ss_pred eeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEE--Eec----CCcccc
Confidence 9999988764211 111233345789999999997521 11256777 444 459999
Q ss_pred eecCCCCCCceeeeeEEe
Q 013797 417 LECGKRPLSHFIHNCSVM 434 (436)
Q Consensus 417 l~~~~~~~~~~~~~~~~~ 434 (436)
++ ++|.+|..++++++
T Consensus 305 ~~--~lp~~~~~~~~~~~ 320 (346)
T TIGR03547 305 VG--KLPQGLAYGVSVSW 320 (346)
T ss_pred cC--CCCCCceeeEEEEc
Confidence 98 56777877766554
No 10
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.3e-32 Score=275.28 Aligned_cols=254 Identities=16% Similarity=0.203 Sum_probs=196.6
Q ss_pred CCeEEEeccC-------CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCC---CeEEEEECCCC
Q 013797 141 EPSVFMLASG-------DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEG---GVIWRYELETN 210 (436)
Q Consensus 141 ~~~l~~~~~~-------~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~---~~v~~ydp~t~ 210 (436)
...+|++.+. .+.+++||+.+++|..++++...+......+++++++++||++||.... +++++||+.++
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 4567777652 1468999999999998876532222112234577889999999996543 78999999999
Q ss_pred CEEeCCCC---CCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCC---CccCCcceeEEEECCEEE
Q 013797 211 NWFKGPSM---RRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPG---MRQRRKLCSGCYMDNKFY 284 (436)
Q Consensus 211 ~W~~l~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~g~iy 284 (436)
+|++++++ |.+|..|++++++++|||+||..... .++++++||+.+++|+.++. ++.+|..+++++++++||
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~--~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA--RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC--CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEE
Confidence 99999887 88999999999999999999987543 57889999999999999864 567888999999999999
Q ss_pred EEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC--------------CeEEEE
Q 013797 285 VIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS--------------NELRVY 350 (436)
Q Consensus 285 v~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~--------------~~i~~y 350 (436)
++||.++. ..+++++||+.+++|+.++++. ..|.+|..+++++++++||++||.. +++++|
T Consensus 333 viGG~~g~--~~~dv~~yD~~t~~W~~~~~~g---~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 333 VVYGFNGC--EVDDVHYYDPVQDKWTQVETFG---VRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred EEECCCCC--ccCceEEEECCCCEEEEeccCC---CCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEE
Confidence 99997643 4688999999999999998653 1236788999999999999999952 479999
Q ss_pred ECCCCcEEEcccCCC---ccCCCCCceEEEEEe--CCEEEEEcCCCC--CCCCcEEEE
Q 013797 351 LKDSNSWKNLGLVPV---RADFNRGWGIAFKSL--GNELLVIGASST--SSHESMAIY 401 (436)
Q Consensus 351 d~~~~~W~~v~~~p~---~~~~~~~~~~~~~~~--~~~l~v~GG~~~--~~~~~~~~y 401 (436)
|+.+++|+++..++. .+.+|..++++.+.+ ++.|+++||... ....++..+
T Consensus 408 D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~ 465 (470)
T PLN02193 408 DTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 465 (470)
T ss_pred EcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEE
Confidence 999999999976542 233444333322222 345999999965 334554444
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=7.9e-33 Score=279.37 Aligned_cols=208 Identities=21% Similarity=0.326 Sum_probs=178.4
Q ss_pred eEEeCCEEEEEceecCC---CeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCC
Q 013797 183 SLCAGTHLIVSGNEIEG---GVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETK 259 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~---~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 259 (436)
++..++.||++||.... +.+++|||.+++|..+++|+.+|..+++++++++||++||.+. .+++++||+.++
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~-----~~sve~ydp~~n 341 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN-----PTSVERWFHGDA 341 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC-----CCceEEEECCCC
Confidence 45589999999996432 6799999999999999999999999999999999999999753 246899999999
Q ss_pred CeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEE
Q 013797 260 SWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYS 339 (436)
Q Consensus 260 ~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv 339 (436)
+|..+++||.+|..+++++++|+||++||.+.. .+.+++||+.+++|+.+++|+ .+|..+++++++|+||+
T Consensus 342 ~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~------~~r~~~~~~~~~~~IYv 412 (480)
T PHA02790 342 AWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTY------YPHYKSCALVFGRRLFL 412 (480)
T ss_pred eEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCC------CccccceEEEECCEEEE
Confidence 999999999999999999999999999997542 367899999999999999998 68888999999999999
Q ss_pred EecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCC-CCCCcEEEEeecCCCCCCccCcEEee
Q 013797 340 LETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASST-SSHESMAIYTCCPSSDAGELQWRLLE 418 (436)
Q Consensus 340 ~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~-~~~~~~~~y~~~p~~d~~~~~W~~l~ 418 (436)
+|| .+.+||+++++|+.+++|+. +|..++++ +++|+||++||.+. .....+++| | +++++|+..+
T Consensus 413 ~GG---~~e~ydp~~~~W~~~~~m~~---~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Y--d----~~~~~W~~~~ 478 (480)
T PHA02790 413 VGR---NAEFYCESSNTWTLIDDPIY---PRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVY--N----NRTYSWNIWD 478 (480)
T ss_pred ECC---ceEEecCCCCcEeEcCCCCC---CccccEEE--EECCEEEEECCcCCCcccceEEEE--E----CCCCeEEecC
Confidence 997 37899999999999988764 35555555 89999999999875 335678888 4 4555998754
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.3e-32 Score=266.33 Aligned_cols=252 Identities=17% Similarity=0.210 Sum_probs=185.8
Q ss_pred CeEEEecc-CCCeEEEEec--CCCCeEeCCCCCC-CCCccCCCeeeEEeCCEEEEEceecC---------CCeEEEEECC
Q 013797 142 PSVFMLAS-GDSSWWAFDR--HFQTRRKLPELPS-DPCFKLGDKESLCAGTHLIVSGNEIE---------GGVIWRYELE 208 (436)
Q Consensus 142 ~~l~~~~~-~~~~~~~~dp--~~~~W~~l~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~---------~~~v~~ydp~ 208 (436)
..+|++.+ ..+.++.||+ .+++|.++++||. ++... +++++++.|||+||... .+.+++|||.
T Consensus 18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~----~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQA----VAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred CEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccc----eEEEECCEEEEEeCCCCCCCCCcceecccEEEEECC
Confidence 34555443 2357889995 6789999999985 44332 37889999999999642 2579999999
Q ss_pred CCCEEeCC-CCCCCCcccEEE-EeCCEEEEEcCcCCCCC--------------------------------CccceEEEE
Q 013797 209 TNNWFKGP-SMRRPRCLFASA-TCGTFAFVAGGHGMDGS--------------------------------GVLNSAERY 254 (436)
Q Consensus 209 t~~W~~l~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~--------------------------------~~~~~~~~y 254 (436)
+++|++++ ++|.+|..++++ +++++||++||.+.... ...+++++|
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Y 173 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSY 173 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEE
Confidence 99999997 456677767666 68999999999763200 013789999
Q ss_pred eCCCCCeEeCCCCcc-CCcceeEEEECCEEEEEeccCCCCCcCCEEEEEE--CCCCcEEEcCCCCCCCC-CCCCCCCCEE
Q 013797 255 NPETKSWDSLPGMRQ-RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYD--EYAGTWYHIPDILKDFP-AETGKSPPLI 330 (436)
Q Consensus 255 d~~t~~W~~~~~~p~-~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD--~~~~~W~~v~~~~~~~~-~~~~r~~~~~ 330 (436)
|+.+++|+.+++||. +|..+++++++++||++||....+.....++.|| +.+++|+.+++|+.... .+..+.++.+
T Consensus 174 Dp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a 253 (346)
T TIGR03547 174 DPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFA 253 (346)
T ss_pred ECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEee
Confidence 999999999999986 6888888999999999999764432334555565 57779999999974211 1122345557
Q ss_pred EEECCEEEEEecCC----------------------CeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEc
Q 013797 331 AVVNNELYSLETSS----------------------NELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIG 388 (436)
Q Consensus 331 ~~~~g~lyv~gg~~----------------------~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~G 388 (436)
++++|+||++||.. ..+.+||+++++|+.++.||.+ +.. .+.+.++++|||+|
T Consensus 254 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~---~~~--~~~~~~~~~iyv~G 328 (346)
T TIGR03547 254 GISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG---LAY--GVSVSWNNGVLLIG 328 (346)
T ss_pred eEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC---cee--eEEEEcCCEEEEEe
Confidence 88999999999852 2578999999999999988753 333 23447899999999
Q ss_pred CCCC--CCCCcEEEEe
Q 013797 389 ASST--SSHESMAIYT 402 (436)
Q Consensus 389 G~~~--~~~~~~~~y~ 402 (436)
|.+. ....++..++
T Consensus 329 G~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 329 GENSGGKAVTDVYLLS 344 (346)
T ss_pred ccCCCCCEeeeEEEEE
Confidence 9875 2334444443
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3e-32 Score=262.80 Aligned_cols=227 Identities=18% Similarity=0.241 Sum_probs=179.9
Q ss_pred eEEEEe-cCC-CCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCC---CeEEEEECCCCCE----EeCCCCCCCCc
Q 013797 153 SWWAFD-RHF-QTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEG---GVIWRYELETNNW----FKGPSMRRPRC 223 (436)
Q Consensus 153 ~~~~~d-p~~-~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~---~~v~~ydp~t~~W----~~l~~~p~~r~ 223 (436)
.++.|+ +.. .+|..+++||.++.... ++++++.||++||.... +++++||+.+++| ..++++|.+|.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~----~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~ 115 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGA----SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFE 115 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceE----EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCcc
Confidence 566665 332 37999999998876543 67789999999996543 6899999999998 78999999999
Q ss_pred ccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCc-cCCcceeEEEECCEEEEEeccCCCCCcCCEEEEE
Q 013797 224 LFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMR-QRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAY 302 (436)
Q Consensus 224 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~y 302 (436)
.|++++++++||++||..... ..+++++||+.+++|+.+++|| .+|..+.+++++++||++||.+.. ...++++|
T Consensus 116 ~~~~~~~~~~iYv~GG~~~~~--~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~y 191 (323)
T TIGR03548 116 NGSACYKDGTLYVGGGNRNGK--PSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKY 191 (323)
T ss_pred CceEEEECCEEEEEeCcCCCc--cCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEE
Confidence 999999999999999975432 5789999999999999999887 478888888999999999997643 24568999
Q ss_pred ECCCCcEEEcCCCCCCCCCCCCCCCCE-EEEECCEEEEEecCC-------------------------------------
Q 013797 303 DEYAGTWYHIPDILKDFPAETGKSPPL-IAVVNNELYSLETSS------------------------------------- 344 (436)
Q Consensus 303 D~~~~~W~~v~~~~~~~~~~~~r~~~~-~~~~~g~lyv~gg~~------------------------------------- 344 (436)
|+.+++|+.+++++.. ..+..+.+++ +++.+++||++||..
T Consensus 192 d~~~~~W~~~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (323)
T TIGR03548 192 SPKKNQWQKVADPTTD-SEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWN 270 (323)
T ss_pred ecCCCeeEECCCCCCC-CCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcC
Confidence 9999999999987421 1123333333 445579999999853
Q ss_pred CeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCC
Q 013797 345 NELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASST 392 (436)
Q Consensus 345 ~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~ 392 (436)
+++++||+.+++|+.++.+|.. .|..++ ++.++++||++||...
T Consensus 271 ~~v~~yd~~~~~W~~~~~~p~~--~r~~~~--~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIGNSPFF--ARCGAA--LLLTGNNIFSINGELK 314 (323)
T ss_pred ceEEEEECCCCeeeEccccccc--ccCchh--eEEECCEEEEEecccc
Confidence 4699999999999999876632 344444 4489999999999865
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=9.4e-32 Score=259.37 Aligned_cols=238 Identities=17% Similarity=0.241 Sum_probs=184.9
Q ss_pred eeEEeCCEEEEEceecCC-------------CeEEEEE-CCC-CCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCC
Q 013797 182 ESLCAGTHLIVSGNEIEG-------------GVIWRYE-LET-NNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSG 246 (436)
Q Consensus 182 ~~~~~~~~iyv~GG~~~~-------------~~v~~yd-p~t-~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 246 (436)
.++++++.|||+||.... +++++|+ +.. .+|..+++||.+|..+++++++++||++||.....
T Consensus 8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~-- 85 (323)
T TIGR03548 8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE-- 85 (323)
T ss_pred eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC--
Confidence 367789999999996432 3677775 432 37999999999998888899999999999987543
Q ss_pred ccceEEEEeCCCCCe----EeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCC
Q 013797 247 VLNSAERYNPETKSW----DSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAE 322 (436)
Q Consensus 247 ~~~~~~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~ 322 (436)
.++++++||+.+++| +.+++||.+|..+++++++++||++||..... ..+++++||+.+++|++++++|.
T Consensus 86 ~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~----- 159 (323)
T TIGR03548 86 RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPG----- 159 (323)
T ss_pred CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCC-----
Confidence 578999999999998 78899999999999999999999999975433 57899999999999999998873
Q ss_pred CCCCCCEEEEECCEEEEEecCC----CeEEEEECCCCcEEEcccCCCccCCCCCc-eEEEEEeCCEEEEEcCCCCC----
Q 013797 323 TGKSPPLIAVVNNELYSLETSS----NELRVYLKDSNSWKNLGLVPVRADFNRGW-GIAFKSLGNELLVIGASSTS---- 393 (436)
Q Consensus 323 ~~r~~~~~~~~~g~lyv~gg~~----~~i~~yd~~~~~W~~v~~~p~~~~~~~~~-~~~~~~~~~~l~v~GG~~~~---- 393 (436)
.+|..+.+++++++||++||.. .++++||+++++|+.++.++....++... .++++..+++|||+||.+..
T Consensus 160 ~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 239 (323)
T TIGR03548 160 EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYND 239 (323)
T ss_pred CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHH
Confidence 4678888889999999999863 46799999999999998765322222222 23334568999999998631
Q ss_pred -----------------------------CCCcEEEEeecCCCCCCccCcEEeecCCCCCCceeeeeEEe
Q 013797 394 -----------------------------SHESMAIYTCCPSSDAGELQWRLLECGKRPLSHFIHNCSVM 434 (436)
Q Consensus 394 -----------------------------~~~~~~~y~~~p~~d~~~~~W~~l~~~~~~~~~~~~~~~~~ 434 (436)
....+++| || .+++|+.++.+| ..+|..++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y--d~----~~~~W~~~~~~p-~~~r~~~~~~~~ 302 (323)
T TIGR03548 240 AVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIY--NV----RTGKWKSIGNSP-FFARCGAALLLT 302 (323)
T ss_pred HHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEE--EC----CCCeeeEccccc-ccccCchheEEE
Confidence 01346666 54 455999999432 257777766655
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.7e-31 Score=259.96 Aligned_cols=254 Identities=19% Similarity=0.253 Sum_probs=190.4
Q ss_pred CeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECC--CCCEEeCCCCC-CCCcccEEEEeCCEEEEEcC
Q 013797 163 TRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELE--TNNWFKGPSMR-RPRCLFASATCGTFAFVAGG 239 (436)
Q Consensus 163 ~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~--t~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG 239 (436)
.+..+++||.++.... ++++++.|||+||.. .+.+++||+. +++|.+++++| .+|..+++++++++|||+||
T Consensus 18 ~~~~l~~lP~~~~~~~----~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG 92 (376)
T PRK14131 18 NAEQLPDLPVPFKNGT----GAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGG 92 (376)
T ss_pred ecccCCCCCcCccCCe----EEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcC
Confidence 4567889998766543 677899999999863 4568999986 47899999998 58999999999999999999
Q ss_pred cCCC-C---CCccceEEEEeCCCCCeEeCCC-CccCCcceeEEE-ECCEEEEEeccCCCC--------------------
Q 013797 240 HGMD-G---SGVLNSAERYNPETKSWDSLPG-MRQRRKLCSGCY-MDNKFYVIGGRNEKD-------------------- 293 (436)
Q Consensus 240 ~~~~-~---~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~g~iyv~gG~~~~~-------------------- 293 (436)
.... . ...++++++||+.+++|+.+++ +|.++..+++++ .+++||++||.+...
T Consensus 93 ~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 93 IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred CCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 7641 1 1246789999999999999975 466676777766 899999999975310
Q ss_pred -------------CcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC------CeEE--EEEC
Q 013797 294 -------------KPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS------NELR--VYLK 352 (436)
Q Consensus 294 -------------~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~------~~i~--~yd~ 352 (436)
...+.+++||+.+++|+.++++|. .+|.+++++.++++||++||.. .+++ .||+
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~-----~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPF-----LGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCC-----CCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 024789999999999999998873 3678888899999999999841 2333 4577
Q ss_pred CCCcEEEcccCCCccC---CCCCceEEEEEeCCEEEEEcCCCCCC------------------CCcEEEEeecCCCCCCc
Q 013797 353 DSNSWKNLGLVPVRAD---FNRGWGIAFKSLGNELLVIGASSTSS------------------HESMAIYTCCPSSDAGE 411 (436)
Q Consensus 353 ~~~~W~~v~~~p~~~~---~~~~~~~~~~~~~~~l~v~GG~~~~~------------------~~~~~~y~~~p~~d~~~ 411 (436)
++++|++++.||.++. .+...++..+..+++|||+||.+... ...+++| +|+ +
T Consensus 248 ~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y--d~~----~ 321 (376)
T PRK14131 248 NNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIY--ALV----N 321 (376)
T ss_pred CCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheE--Eec----C
Confidence 8999999998876431 11112332347899999999975310 1235667 544 4
Q ss_pred cCcEEeecCCCCCCceeeeeEEe
Q 013797 412 LQWRLLECGKRPLSHFIHNCSVM 434 (436)
Q Consensus 412 ~~W~~l~~~~~~~~~~~~~~~~~ 434 (436)
++|+.++ ++|.+|..++++++
T Consensus 322 ~~W~~~~--~lp~~r~~~~av~~ 342 (376)
T PRK14131 322 GKWQKVG--ELPQGLAYGVSVSW 342 (376)
T ss_pred CcccccC--cCCCCccceEEEEe
Confidence 5999998 56778877766654
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1e-30 Score=256.88 Aligned_cols=253 Identities=16% Similarity=0.243 Sum_probs=185.4
Q ss_pred CCeEEEecc-CCCeEEEEecC--CCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecC---------CCeEEEEECC
Q 013797 141 EPSVFMLAS-GDSSWWAFDRH--FQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIE---------GGVIWRYELE 208 (436)
Q Consensus 141 ~~~l~~~~~-~~~~~~~~dp~--~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~---------~~~v~~ydp~ 208 (436)
...+|++.+ ..+.++.||+. +++|..++++|...+.. ++++++++.|||+||... .+++++||+.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~---~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQ---AVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCccc---ceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC
Confidence 345666544 34568899986 47899999988533322 247888999999999653 2579999999
Q ss_pred CCCEEeCCC-CCCCCcccEEEE-eCCEEEEEcCcCCCC--------------------------------CCccceEEEE
Q 013797 209 TNNWFKGPS-MRRPRCLFASAT-CGTFAFVAGGHGMDG--------------------------------SGVLNSAERY 254 (436)
Q Consensus 209 t~~W~~l~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~--------------------------------~~~~~~~~~y 254 (436)
+++|+++++ .|.++..|++++ .+++||++||..... ....+++++|
T Consensus 115 ~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~Y 194 (376)
T PRK14131 115 TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSY 194 (376)
T ss_pred CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEE
Confidence 999999986 466677777766 899999999975310 0024689999
Q ss_pred eCCCCCeEeCCCCcc-CCcceeEEEECCEEEEEeccCCCCCcCCEEE--EEECCCCcEEEcCCCCCCCCCCC--CCCCCE
Q 013797 255 NPETKSWDSLPGMRQ-RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGE--AYDEYAGTWYHIPDILKDFPAET--GKSPPL 329 (436)
Q Consensus 255 d~~t~~W~~~~~~p~-~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~--~yD~~~~~W~~v~~~~~~~~~~~--~r~~~~ 329 (436)
|+.+++|+.++++|. +|..++++.++++||++||....+.....++ .||+++++|..+++||....... .+.++.
T Consensus 195 D~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~ 274 (376)
T PRK14131 195 DPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAF 274 (376)
T ss_pred ECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEe
Confidence 999999999999986 6778888899999999999754332333343 56788999999999874221111 112233
Q ss_pred EEEECCEEEEEecCC----------------------CeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEE
Q 013797 330 IAVVNNELYSLETSS----------------------NELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVI 387 (436)
Q Consensus 330 ~~~~~g~lyv~gg~~----------------------~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~ 387 (436)
+++++++||++||.. ..+++||+++++|+.++.||.+ +..+ +++.++++|||+
T Consensus 275 a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~---r~~~--~av~~~~~iyv~ 349 (376)
T PRK14131 275 AGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG---LAYG--VSVSWNNGVLLI 349 (376)
T ss_pred ceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC---ccce--EEEEeCCEEEEE
Confidence 577899999999852 1357899999999999888754 3333 344899999999
Q ss_pred cCCCC--CCCCcEEEE
Q 013797 388 GASST--SSHESMAIY 401 (436)
Q Consensus 388 GG~~~--~~~~~~~~y 401 (436)
||... ....+++.|
T Consensus 350 GG~~~~~~~~~~v~~~ 365 (376)
T PRK14131 350 GGETAGGKAVSDVTLL 365 (376)
T ss_pred cCCCCCCcEeeeEEEE
Confidence 99865 344455556
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4.1e-31 Score=266.89 Aligned_cols=196 Identities=21% Similarity=0.348 Sum_probs=173.1
Q ss_pred CeEEEeccC-----CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCCEEeCC
Q 013797 142 PSVFMLASG-----DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGP 216 (436)
Q Consensus 142 ~~l~~~~~~-----~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~ 216 (436)
..+|+.++. ...++.|||.+++|..+++|+.++.... +++.++.||++||....+.+++|||.+++|..++
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~----~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS----GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce----EEEECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455666541 2468899999999999999998876543 6788999999999766678999999999999999
Q ss_pred CCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcC
Q 013797 217 SMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPL 296 (436)
Q Consensus 217 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~ 296 (436)
+||.+|..+++++++++||++||.... .+.+++|||.+++|+.+++|+.+|..+++++++|+||++||.
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~------- 416 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSET----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN------- 416 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCC----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc-------
Confidence 999999999999999999999997532 357899999999999999999999999999999999999972
Q ss_pred CEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-----CCeEEEEECCCCcEEEc
Q 013797 297 TCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS-----SNELRVYLKDSNSWKNL 360 (436)
Q Consensus 297 ~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~-----~~~i~~yd~~~~~W~~v 360 (436)
+++||+++++|+.+++|+ .+|..+++++++|+||++||. .+.+++||+++++|+..
T Consensus 417 --~e~ydp~~~~W~~~~~m~------~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 --AEFYCESSNTWTLIDDPI------YPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred --eEEecCCCCcEeEcCCCC------CCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 589999999999999998 688999999999999999985 35799999999999875
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.4e-31 Score=232.61 Aligned_cols=246 Identities=17% Similarity=0.246 Sum_probs=201.2
Q ss_pred CeeeEEeCCEEEEEceecCC--------CeEEEEECCCCCEEeCCC-------------CCCCCcccEEEEeCCEEEEEc
Q 013797 180 DKESLCAGTHLIVSGNEIEG--------GVIWRYELETNNWFKGPS-------------MRRPRCLFASATCGTFAFVAG 238 (436)
Q Consensus 180 ~~~~~~~~~~iyv~GG~~~~--------~~v~~ydp~t~~W~~l~~-------------~p~~r~~~~~~~~~~~iyv~G 238 (436)
+++++.+|..||-|||...+ -++.++|..+-+|.++|+ .|..|++|+++.+.+++|+.|
T Consensus 16 NHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 16 NHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred cceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence 34588999999999997544 489999999999999987 245699999999999999999
Q ss_pred CcCCCCCCccceEEEEeCCCCCeEeC---CCCccCCcceeEEEECCEEEEEeccCCC-CCcCCEEEEEECCCCcEEEcCC
Q 013797 239 GHGMDGSGVLNSAERYNPETKSWDSL---PGMRQRRKLCSGCYMDNKFYVIGGRNEK-DKPLTCGEAYDEYAGTWYHIPD 314 (436)
Q Consensus 239 G~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~g~iyv~gG~~~~-~~~~~~v~~yD~~~~~W~~v~~ 314 (436)
|.+++.. ..+.++.||+++++|.+. +-.|.+|.+|++|++++.+|+|||+... ..+.+++.++|..|-+|+.+.+
T Consensus 96 GRND~eg-aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~T 174 (392)
T KOG4693|consen 96 GRNDDEG-ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHT 174 (392)
T ss_pred CccCccc-ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhc
Confidence 9887432 678899999999999865 5678999999999999999999998543 3478899999999999999986
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEecC--------------CCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEe
Q 013797 315 ILKDFPAETGKSPPLIAVVNNELYSLETS--------------SNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSL 380 (436)
Q Consensus 315 ~~~~~~~~~~r~~~~~~~~~g~lyv~gg~--------------~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~ 380 (436)
... .+.-|..|+++++++++|++||. .+.|..+|.+|+.|..-.+-+..+..|+++++- .+
T Consensus 175 kg~---PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~f--vY 249 (392)
T KOG4693|consen 175 KGD---PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTF--VY 249 (392)
T ss_pred cCC---CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceE--EE
Confidence 542 12567789999999999999983 457999999999999987666666777777665 89
Q ss_pred CCEEEEEcCCCC-CCCCcEEEEeecCCCCCCccCcEEee-cCCCCCCceeeeeEEee
Q 013797 381 GNELLVIGASST-SSHESMAIYTCCPSSDAGELQWRLLE-CGKRPLSHFIHNCSVMV 435 (436)
Q Consensus 381 ~~~l~v~GG~~~-~~~~~~~~y~~~p~~d~~~~~W~~l~-~~~~~~~~~~~~~~~~~ 435 (436)
+++||+|||.+. -+..-.+.|.|||.+ ..|++|. ...-|.+|-.++|+|++
T Consensus 250 ng~~Y~FGGYng~ln~HfndLy~FdP~t----~~W~~I~~~Gk~P~aRRRqC~~v~g 302 (392)
T KOG4693|consen 250 NGKMYMFGGYNGTLNVHFNDLYCFDPKT----SMWSVISVRGKYPSARRRQCSVVSG 302 (392)
T ss_pred cceEEEecccchhhhhhhcceeeccccc----chheeeeccCCCCCcccceeEEEEC
Confidence 999999999987 333334566666654 4999998 33458888888888876
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=265.62 Aligned_cols=214 Identities=19% Similarity=0.342 Sum_probs=183.5
Q ss_pred CCeEEEeccC------CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCC---CeEEEEECCCCC
Q 013797 141 EPSVFMLASG------DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEG---GVIWRYELETNN 211 (436)
Q Consensus 141 ~~~l~~~~~~------~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~---~~v~~ydp~t~~ 211 (436)
...+|++++. ...++.||+.+++|..+++|+.++..+ ++++.++.||++||.... +.+++|||.+++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~----~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP----GVTVFNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc----eEEEECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556776651 147899999999999999999877654 378889999999997533 689999999999
Q ss_pred EEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCC
Q 013797 212 WFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNE 291 (436)
Q Consensus 212 W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~ 291 (436)
|+.++++|.+|..++++.++++||++||...... ..+++++||+.+++|+.++++|.+|..+++++++++||++||...
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~-~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDE-LLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCc-ccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC
Confidence 9999999999999999999999999999754322 468899999999999999999999999999999999999999764
Q ss_pred CCC--cCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-----CCeEEEEECCCCcEEEcccCC
Q 013797 292 KDK--PLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS-----SNELRVYLKDSNSWKNLGLVP 364 (436)
Q Consensus 292 ~~~--~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~-----~~~i~~yd~~~~~W~~v~~~p 364 (436)
... ..+.+++||+.+++|+.+++++ .+|..+++++++++||++||. .+.+++||+++++|+.++.+|
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLN------FPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCC------cccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 331 2567999999999999999887 578888899999999999985 368999999999999998766
Q ss_pred C
Q 013797 365 V 365 (436)
Q Consensus 365 ~ 365 (436)
.
T Consensus 523 ~ 523 (534)
T PHA03098 523 K 523 (534)
T ss_pred c
Confidence 4
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=227.43 Aligned_cols=236 Identities=17% Similarity=0.254 Sum_probs=194.3
Q ss_pred CeEEEEecCCCCeEeCCCC------CCCC---CccCCCeeeEEeCCEEEEEceecCC----CeEEEEECCCCCEEeCC--
Q 013797 152 SSWWAFDRHFQTRRKLPEL------PSDP---CFKLGDKESLCAGTHLIVSGNEIEG----GVIWRYELETNNWFKGP-- 216 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~------~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~----~~v~~ydp~t~~W~~l~-- 216 (436)
.+++++|..+-+|.++|+- +.+. .+.+-.+.++..++++|+.||.++. +.++.|||.|++|.+..
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~ 123 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVE 123 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecccccccccccee
Confidence 4788999999999999872 1111 2223345688899999999998764 78999999999998864
Q ss_pred -CCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeC---CCCccCCcceeEEEECCEEEEEeccCCC
Q 013797 217 -SMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL---PGMRQRRKLCSGCYMDNKFYVIGGRNEK 292 (436)
Q Consensus 217 -~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~g~iyv~gG~~~~ 292 (436)
.+|..|.+|+++++++.+|++||+..+..+.+++++++|..|.+|+.+ +.+|.-|.+|+++++++.+|||||+...
T Consensus 124 G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~ 203 (392)
T KOG4693|consen 124 GFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDE 203 (392)
T ss_pred eecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEecccccc
Confidence 478999999999999999999999877666889999999999999987 5677888999999999999999997432
Q ss_pred C--------CcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-------CCeEEEEECCCCcE
Q 013797 293 D--------KPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS-------SNELRVYLKDSNSW 357 (436)
Q Consensus 293 ~--------~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~-------~~~i~~yd~~~~~W 357 (436)
. .+.+.+..+|+.|+.|...++-+ -.|.+|..|++.+.+++||++||+ .++++.|||++..|
T Consensus 204 ~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~---~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W 280 (392)
T KOG4693|consen 204 SGPFHSIHEQYCDTIMALDLATGAWTRTPENT---MKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMW 280 (392)
T ss_pred CCCccchhhhhcceeEEEeccccccccCCCCC---cCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchh
Confidence 2 35678999999999999876433 235788999999999999999986 46899999999999
Q ss_pred EEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCC
Q 013797 358 KNLGLVPVRADFNRGWGIAFKSLGNELLVIGASST 392 (436)
Q Consensus 358 ~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~ 392 (436)
+.|..-...+.+|+....+ +.|+++|+|||...
T Consensus 281 ~~I~~~Gk~P~aRRRqC~~--v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 281 SVISVRGKYPSARRRQCSV--VSGGKVYLFGGTSP 313 (392)
T ss_pred eeeeccCCCCCcccceeEE--EECCEEEEecCCCC
Confidence 9997555555566665433 89999999999764
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=223.80 Aligned_cols=243 Identities=21% Similarity=0.295 Sum_probs=200.2
Q ss_pred eeEEeCCEEEEEceecCC---C--eEEEEECCCCCEEeCC---CCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEE
Q 013797 182 ESLCAGTHLIVSGNEIEG---G--VIWRYELETNNWFKGP---SMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAER 253 (436)
Q Consensus 182 ~~~~~~~~iyv~GG~~~~---~--~v~~ydp~t~~W~~l~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 253 (436)
+++.+++.+||+||.... . +++++|..+..|.... ..|.+|.+|+++.++++||++||.... ....++++.
T Consensus 65 s~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~-~~~~~~l~~ 143 (482)
T KOG0379|consen 65 SAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK-YRNLNELHS 143 (482)
T ss_pred ceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC-CCChhheEe
Confidence 366779999999996443 2 5999999999998875 367899999999999999999998852 225789999
Q ss_pred EeCCCCCeEeC---CCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEE
Q 013797 254 YNPETKSWDSL---PGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLI 330 (436)
Q Consensus 254 yd~~t~~W~~~---~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~ 330 (436)
||+.|++|+.+ +.+|.+|.+|++++++.+|||+||.+..+...+++++||+++.+|.++.... ..|.+|.+|++
T Consensus 144 ~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g---~~P~pR~gH~~ 220 (482)
T KOG0379|consen 144 LDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQG---EAPSPRYGHAM 220 (482)
T ss_pred ccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCC---CCCCCCCCceE
Confidence 99999999987 4568999999999999999999999877768999999999999999998654 23479999999
Q ss_pred EEECCEEEEEecC------CCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCC-CcEEEEee
Q 013797 331 AVVNNELYSLETS------SNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSH-ESMAIYTC 403 (436)
Q Consensus 331 ~~~~g~lyv~gg~------~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~-~~~~~y~~ 403 (436)
++++++++++||. .++++.+|..+.+|+++......+.+|.+|.++ ..+..++++||...... ..-+.|.+
T Consensus 221 ~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~--~~~~~~~l~gG~~~~~~~~l~~~~~l 298 (482)
T KOG0379|consen 221 VVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT--VSGDHLLLFGGGTDPKQEPLGDLYGL 298 (482)
T ss_pred EEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeE--EECCEEEEEcCCcccccccccccccc
Confidence 9999999999874 468999999999999887766666777776665 89999999999986311 23345555
Q ss_pred cCCCCCCccCcEEeecCC--CCCCceeeeeEEe
Q 013797 404 CPSSDAGELQWRLLECGK--RPLSHFIHNCSVM 434 (436)
Q Consensus 404 ~p~~d~~~~~W~~l~~~~--~~~~~~~~~~~~~ 434 (436)
+.+ +..|.++.... .|.+|+.|..+.+
T Consensus 299 ~~~----~~~w~~~~~~~~~~~~~~~~~~~~~~ 327 (482)
T KOG0379|consen 299 DLE----TLVWSKVESVGVVRPSPRLGHAAELI 327 (482)
T ss_pred ccc----ccceeeeeccccccccccccccceee
Confidence 544 66999999665 5888888877665
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.92 E-value=6.6e-24 Score=196.42 Aligned_cols=224 Identities=16% Similarity=0.241 Sum_probs=178.2
Q ss_pred CCEEEEEceecCC-------CeEEEEECCCCCEEeC--CCCCCCCcccEEEEeC-CEEEEEcCcCCCC----CCccceEE
Q 013797 187 GTHLIVSGNEIEG-------GVIWRYELETNNWFKG--PSMRRPRCLFASATCG-TFAFVAGGHGMDG----SGVLNSAE 252 (436)
Q Consensus 187 ~~~iyv~GG~~~~-------~~v~~ydp~t~~W~~l--~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~----~~~~~~~~ 252 (436)
.+.|++|||.... +++|+||..+++|+++ |.-|.||+.|.++++. +.+|++||.-... -....++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 5588899986433 7899999999999987 4578999999998885 8999999964321 12457899
Q ss_pred EEeCCCCCeEeC--CCCccCCcceeEEEECCEEEEEeccCCCC---CcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCC
Q 013797 253 RYNPETKSWDSL--PGMRQRRKLCSGCYMDNKFYVIGGRNEKD---KPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSP 327 (436)
Q Consensus 253 ~yd~~t~~W~~~--~~~p~~r~~~~~~~~~g~iyv~gG~~~~~---~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~ 327 (436)
.||..+++|+++ +.-|.+|.+|.+++...+|++|||+.... .+.|++++||+.+-+|+++.+ +.. .|.+|++
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga--~PtpRSG 234 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGA--GPTPRSG 234 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCC--CCCCCCc
Confidence 999999999988 45689999999999999999999974332 478999999999999999987 322 4689999
Q ss_pred CEEEEE-CCEEEEEecC--------------CCeEEEEECCC-----CcEEEcccCCCccCCCCCceEEEEEeCCEEEEE
Q 013797 328 PLIAVV-NNELYSLETS--------------SNELRVYLKDS-----NSWKNLGLVPVRADFNRGWGIAFKSLGNELLVI 387 (436)
Q Consensus 328 ~~~~~~-~g~lyv~gg~--------------~~~i~~yd~~~-----~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~ 387 (436)
+++.+. +|.||++||+ .+++|.+++.+ -+|.++.+....+.+|.++++++ .-+++-+.|
T Consensus 235 cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~v-a~n~kal~F 313 (521)
T KOG1230|consen 235 CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAV-AKNHKALFF 313 (521)
T ss_pred ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEE-ecCCceEEe
Confidence 999988 9999999996 34688999887 57999988777778899988775 667799999
Q ss_pred cCCCC-CC----CC---cEEEEeecCCCCCCccCcEEee
Q 013797 388 GASST-SS----HE---SMAIYTCCPSSDAGELQWRLLE 418 (436)
Q Consensus 388 GG~~~-~~----~~---~~~~y~~~p~~d~~~~~W~~l~ 418 (436)
||..+ .. +. -.+.|-| |++.++|....
T Consensus 314 GGV~D~eeeeEsl~g~F~NDLy~f----dlt~nrW~~~q 348 (521)
T KOG1230|consen 314 GGVCDLEEEEESLSGEFFNDLYFF----DLTRNRWSEGQ 348 (521)
T ss_pred cceecccccchhhhhhhhhhhhhe----ecccchhhHhh
Confidence 99765 11 10 1234433 46677997653
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.91 E-value=9.7e-23 Score=205.07 Aligned_cols=274 Identities=18% Similarity=0.188 Sum_probs=204.4
Q ss_pred CCeEEEeccC-----CC--eEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCC----CeEEEEECCC
Q 013797 141 EPSVFMLASG-----DS--SWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEG----GVIWRYELET 209 (436)
Q Consensus 141 ~~~l~~~~~~-----~~--~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~----~~v~~ydp~t 209 (436)
...+++|.+. .. ++++||..+..|.....-...+ .....+.+++++++||+|||.... ++++.||+.|
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t 148 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLST 148 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC-CcccceeEEEECCeEEEEccccCCCCChhheEeccCCC
Confidence 4556777652 12 5999999999998764432222 223334578889999999997632 5899999999
Q ss_pred CCEEeCCC---CCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeC---CCCccCCcceeEEEECCEE
Q 013797 210 NNWFKGPS---MRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL---PGMRQRRKLCSGCYMDNKF 283 (436)
Q Consensus 210 ~~W~~l~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~g~i 283 (436)
++|..+.+ .|.+|.+|++++++.++||+||...... .++++++||+.+.+|.++ +..|.+|.+|+++++++++
T Consensus 149 ~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~-~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~ 227 (482)
T KOG0379|consen 149 RTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD-SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKL 227 (482)
T ss_pred CcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc-ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeE
Confidence 99998864 5889999999999999999999886543 689999999999999987 5678899999999999999
Q ss_pred EEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-------CCeEEEEECCCCc
Q 013797 284 YVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS-------SNELRVYLKDSNS 356 (436)
Q Consensus 284 yv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~-------~~~i~~yd~~~~~ 356 (436)
+++||.+.....+++++.+|+.+.+|..+.... ..|.+|++|.+++.+..++++||. ..+++.||..++.
T Consensus 228 ~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g---~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~ 304 (482)
T KOG0379|consen 228 LVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG---DLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLV 304 (482)
T ss_pred EEEeccccCCceecceEeeecccceeeeccccC---CCCCCcceeeeEEECCEEEEEcCCcccccccccccccccccccc
Confidence 999998855558999999999999999766544 235899999999999999999974 3367899999999
Q ss_pred EEEcccCC-CccCCCCCceEEEEEeC--CEEEEEcCCCCCCCCcEEEEeecCCCCCCccCcEEeec
Q 013797 357 WKNLGLVP-VRADFNRGWGIAFKSLG--NELLVIGASSTSSHESMAIYTCCPSSDAGELQWRLLEC 419 (436)
Q Consensus 357 W~~v~~~p-~~~~~~~~~~~~~~~~~--~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W~~l~~ 419 (436)
|.++.... ..+.++..+...+.... ..+.++|+..........++...+......+.|..+..
T Consensus 305 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (482)
T KOG0379|consen 305 WSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLSRKNEVQEPGT 370 (482)
T ss_pred eeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccccCCccccccc
Confidence 99998766 44444544444433322 23444555433223334455444444555667766653
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=6.8e-22 Score=187.25 Aligned_cols=262 Identities=17% Similarity=0.209 Sum_probs=187.2
Q ss_pred hhhhhhcc-chhHHHHhhcC--ccCCeEEEeccCC----CeEEEEecCCCCeEeC---CCCCCCCCccCCCeeeEEeCCE
Q 013797 120 RFLSLLKS-GELFKIRREIG--FREPSVFMLASGD----SSWWAFDRHFQTRRKL---PELPSDPCFKLGDKESLCAGTH 189 (436)
Q Consensus 120 ~w~~li~s-~~f~~~~~~~~--~~~~~l~~~~~~~----~~~~~~dp~~~~W~~l---~~~~~~~~~~~~~~~~~~~~~~ 189 (436)
+||++..+ ....+.|+-+. ...+.+.+|.++. +++++||..++.|..- ..+|.+ ...+..++.|..
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpg----cAA~GfvcdGtr 93 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCDGTR 93 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCc----hhhcceEecCce
Confidence 57766532 33333332221 1245556666542 5789999999999742 223322 223347899999
Q ss_pred EEEEceecCC----CeEEEEECCCCCEEeCCC-------CCCCCcccEEEEeCCEEEEEcCcCCCC-------CCccceE
Q 013797 190 LIVSGNEIEG----GVIWRYELETNNWFKGPS-------MRRPRCLFASATCGTFAFVAGGHGMDG-------SGVLNSA 251 (436)
Q Consensus 190 iyv~GG~~~~----~~v~~ydp~t~~W~~l~~-------~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~ 251 (436)
||+|||..+. +++|......-.|+++.+ +|.||.+|+...++++.|+|||...+. .++++++
T Consensus 94 ilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl 173 (830)
T KOG4152|consen 94 ILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL 173 (830)
T ss_pred EEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence 9999996432 455444444455777743 578999999999999999999975432 2478899
Q ss_pred EEEeCCCCC----eEeC---CCCccCCcceeEEEE------CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCC
Q 013797 252 ERYNPETKS----WDSL---PGMRQRRKLCSGCYM------DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKD 318 (436)
Q Consensus 252 ~~yd~~t~~----W~~~---~~~p~~r~~~~~~~~------~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~ 318 (436)
++.++.-+. |... +.+|.+|..|.++++ ..+|||+||.++. .+.++|.+|+++-+|.+...-.
T Consensus 174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G-- 249 (830)
T KOG4152|consen 174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSG-- 249 (830)
T ss_pred EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccC--
Confidence 999887554 8754 778999999999887 3479999998876 5899999999999999865211
Q ss_pred CCCCCCCCCCEEEEECCEEEEEecC-------------------CCeEEEEECCCCcEEEcc--cCCC--ccCCCCCceE
Q 013797 319 FPAETGKSPPLIAVVNNELYSLETS-------------------SNELRVYLKDSNSWKNLG--LVPV--RADFNRGWGI 375 (436)
Q Consensus 319 ~~~~~~r~~~~~~~~~g~lyv~gg~-------------------~~~i~~yd~~~~~W~~v~--~~p~--~~~~~~~~~~ 375 (436)
-.|.+|+-|.+++++++||++||. .+++-.+++++..|..+- .+.. .+..|.+|
T Consensus 250 -~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGH-- 326 (830)
T KOG4152|consen 250 -VAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGH-- 326 (830)
T ss_pred -CCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccc--
Confidence 124789999999999999999983 345778899999999873 1111 22334444
Q ss_pred EEEEeCCEEEEEcCCCC
Q 013797 376 AFKSLGNELLVIGASST 392 (436)
Q Consensus 376 ~~~~~~~~l~v~GG~~~ 392 (436)
+.+++|.+||+..|.++
T Consensus 327 CAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 327 CAVAIGTRLYIWSGRDG 343 (830)
T ss_pred eeEEeccEEEEEeccch
Confidence 44599999999999987
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=4.2e-21 Score=181.90 Aligned_cols=256 Identities=18% Similarity=0.220 Sum_probs=187.2
Q ss_pred CeEeCC----CCCCCCCccCCCeeeEEeCCEEEEEceecCC--CeEEEEECCCCCEEeC---CCCCCCCcccEEEEeCCE
Q 013797 163 TRRKLP----ELPSDPCFKLGDKESLCAGTHLIVSGNEIEG--GVIWRYELETNNWFKG---PSMRRPRCLFASATCGTF 233 (436)
Q Consensus 163 ~W~~l~----~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~--~~v~~ydp~t~~W~~l---~~~p~~r~~~~~~~~~~~ 233 (436)
+|.++. |.|.++..++ ++++...|.+|||.+++ .++.+||..+|+|..- .+.|.+-..|..+..+.+
T Consensus 18 rWrrV~~~tGPvPrpRHGHR----AVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtr 93 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHR----AVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTR 93 (830)
T ss_pred ceEEEecccCCCCCccccch----heeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCce
Confidence 465543 4555555444 68889999999998776 7899999999999754 467777778888888999
Q ss_pred EEEEcCcCCCCCCccceEEEEeCCCCC--eEeC-------CCCccCCcceeEEEECCEEEEEeccCCCC--------CcC
Q 013797 234 AFVAGGHGMDGSGVLNSAERYNPETKS--WDSL-------PGMRQRRKLCSGCYMDNKFYVIGGRNEKD--------KPL 296 (436)
Q Consensus 234 iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~-------~~~p~~r~~~~~~~~~g~iyv~gG~~~~~--------~~~ 296 (436)
||+|||.-..+. +.+++ |.+.... |+.+ +++|.+|.+|+..+.++|-|+|||..... .++
T Consensus 94 ilvFGGMvEYGk-YsNdL--YELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYL 170 (830)
T KOG4152|consen 94 ILVFGGMVEYGK-YSNDL--YELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYL 170 (830)
T ss_pred EEEEccEeeecc-ccchH--HHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhh
Confidence 999999876653 56655 4455444 5665 34578999999999999999999973321 368
Q ss_pred CEEEEEECCCC----cEEEcCCCCCCCCCCCCCCCCEEEEE------CCEEEEEecC----CCeEEEEECCCCcEEEccc
Q 013797 297 TCGEAYDEYAG----TWYHIPDILKDFPAETGKSPPLIAVV------NNELYSLETS----SNELRVYLKDSNSWKNLGL 362 (436)
Q Consensus 297 ~~v~~yD~~~~----~W~~v~~~~~~~~~~~~r~~~~~~~~------~g~lyv~gg~----~~~i~~yd~~~~~W~~v~~ 362 (436)
++++++++.-+ .|...-.-. ..|.+|..|.++++ .-+||++||. .+++|.+|+++..|.+...
T Consensus 171 nDlY~leL~~Gsgvv~W~ip~t~G---v~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 171 NDLYILELRPGSGVVAWDIPITYG---VLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSL 247 (830)
T ss_pred cceEEEEeccCCceEEEecccccC---CCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccc
Confidence 89999998865 487643211 12478888888877 2389999985 5689999999999999864
Q ss_pred CCCccCCCCCceEEEEEeCCEEEEEcCCCC---CC----C--------CcEEEEeecCCCCCCccCcEEee-----cCCC
Q 013797 363 VPVRADFNRGWGIAFKSLGNELLVIGASST---SS----H--------ESMAIYTCCPSSDAGELQWRLLE-----CGKR 422 (436)
Q Consensus 363 ~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~---~~----~--------~~~~~y~~~p~~d~~~~~W~~l~-----~~~~ 422 (436)
-...+.+|.-|.+. ..|+++|||||+.. .+ . .+..++ ++.+.+|+.|- ....
T Consensus 248 ~G~~PlPRSLHsa~--~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~cl------Nldt~~W~tl~~d~~ed~ti 319 (830)
T KOG4152|consen 248 SGVAPLPRSLHSAT--TIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACL------NLDTMAWETLLMDTLEDNTI 319 (830)
T ss_pred cCCCCCCcccccce--eecceeEEecceeeeeccccccccccceeeeccceeee------eecchheeeeeecccccccc
Confidence 33344456666666 78999999999864 11 0 122333 56777998874 2226
Q ss_pred CCCceeeeeEEeeC
Q 013797 423 PLSHFIHNCSVMVA 436 (436)
Q Consensus 423 ~~~~~~~~~~~~~~ 436 (436)
|.+|..|+++.|+.
T Consensus 320 PR~RAGHCAvAigt 333 (830)
T KOG4152|consen 320 PRARAGHCAVAIGT 333 (830)
T ss_pred ccccccceeEEecc
Confidence 99999999998863
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=175.03 Aligned_cols=254 Identities=14% Similarity=0.158 Sum_probs=186.2
Q ss_pred CCCChHHHHHHhhccCCccccccc-cc-----ccHhhhhhhccchhHHHHhhcCccCCeEEEecc----C-----CCeEE
Q 013797 91 VPSLSDELEVLIVARVPRAEYWKF-YL-----LNKRFLSLLKSGELFKIRREIGFREPSVFMLAS----G-----DSSWW 155 (436)
Q Consensus 91 ~~~LPddl~~~ILarLP~~~l~~~-~~-----Vck~w~~li~s~~f~~~~~~~~~~~~~l~~~~~----~-----~~~~~ 155 (436)
.+.|-++.|.+||..|..+.+-.. -. -|++=-+|.. .+....|++|.+ + -+++|
T Consensus 33 ~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~-----------nPekeELilfGGEf~ngqkT~vYndLy 101 (521)
T KOG1230|consen 33 NEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFA-----------NPEKEELILFGGEFYNGQKTHVYNDLY 101 (521)
T ss_pred CcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceee-----------ccCcceeEEecceeecceeEEEeeeee
Confidence 345667788888887776654210 01 1111111111 122235666655 1 26889
Q ss_pred EEecCCCCeEeCCCC--CCCCCccCCCeeeEEeCCEEEEEceecCC---------CeEEEEECCCCCEEeCCC--CCCCC
Q 013797 156 AFDRHFQTRRKLPEL--PSDPCFKLGDKESLCAGTHLIVSGNEIEG---------GVIWRYELETNNWFKGPS--MRRPR 222 (436)
Q Consensus 156 ~~dp~~~~W~~l~~~--~~~~~~~~~~~~~~~~~~~iyv~GG~~~~---------~~v~~ydp~t~~W~~l~~--~p~~r 222 (436)
.||..+++|.++... |.||+.+. +++...|.+|+|||.... .++|.||..|++|.++.. -|.||
T Consensus 102 ~Yn~k~~eWkk~~spn~P~pRsshq---~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 102 SYNTKKNEWKKVVSPNAPPPRSSHQ---AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred EEeccccceeEeccCCCcCCCccce---eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 999999999987443 33444333 345556899999997543 689999999999999854 68999
Q ss_pred cccEEEEeCCEEEEEcCcCCCC--CCccceEEEEeCCCCCeEeCCC---CccCCcceeEEEE-CCEEEEEeccCCC----
Q 013797 223 CLFASATCGTFAFVAGGHGMDG--SGVLNSAERYNPETKSWDSLPG---MRQRRKLCSGCYM-DNKFYVIGGRNEK---- 292 (436)
Q Consensus 223 ~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~-~g~iyv~gG~~~~---- 292 (436)
++|-+++...+|++|||+.... ..+.+++++||+.+=+|.++.+ -|.+|.+|...+. +|.|||.||+...
T Consensus 179 SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK 258 (521)
T KOG1230|consen 179 SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKK 258 (521)
T ss_pred ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhh
Confidence 9999999999999999986543 3478999999999999999843 4789999888877 9999999998432
Q ss_pred ----CCcCCEEEEEECCC-----CcEEEcCCCCCCCCCCCCCCCCEEEEE-CCEEEEEecC--------------CCeEE
Q 013797 293 ----DKPLTCGEAYDEYA-----GTWYHIPDILKDFPAETGKSPPLIAVV-NNELYSLETS--------------SNELR 348 (436)
Q Consensus 293 ----~~~~~~v~~yD~~~-----~~W~~v~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~--------------~~~i~ 348 (436)
+...++++.+++.. -.|+.+.+.. ..|.+|.+.++++. +++-|.+||. .++++
T Consensus 259 ~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g---~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy 335 (521)
T KOG1230|consen 259 DVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSG---VKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLY 335 (521)
T ss_pred hhhcCceeeeeeeecCCcCCCcceeEeeccCCC---CCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhh
Confidence 33567889999988 5788887643 22589999998877 4589999873 56899
Q ss_pred EEECCCCcEEEcc
Q 013797 349 VYLKDSNSWKNLG 361 (436)
Q Consensus 349 ~yd~~~~~W~~v~ 361 (436)
.||...+.|.+.+
T Consensus 336 ~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 336 FFDLTRNRWSEGQ 348 (521)
T ss_pred heecccchhhHhh
Confidence 9999999998763
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=1.4e-16 Score=146.35 Aligned_cols=240 Identities=18% Similarity=0.275 Sum_probs=170.6
Q ss_pred eEEEecc-CCCeEEEEecCC--CCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCC--------CeEEEEECCCCC
Q 013797 143 SVFMLAS-GDSSWWAFDRHF--QTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEG--------GVIWRYELETNN 211 (436)
Q Consensus 143 ~l~~~~~-~~~~~~~~dp~~--~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~--------~~v~~ydp~t~~ 211 (436)
.+|+-.+ .+..|+..|... ..|++++..|-..+.... .+.++++||+|||.... +++++|||.+|+
T Consensus 48 ~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~---~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns 124 (381)
T COG3055 48 TVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAV---AAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS 124 (381)
T ss_pred eEEEEeccCCccceehhhhcCCCCceEcccCCCcccccch---heeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh
Confidence 4555443 467899998764 689999999877665543 67889999999985322 689999999999
Q ss_pred EEeCCC-CCCCCcccEEEEeCC-EEEEEcCcCCC--------------------------------CCCccceEEEEeCC
Q 013797 212 WFKGPS-MRRPRCLFASATCGT-FAFVAGGHGMD--------------------------------GSGVLNSAERYNPE 257 (436)
Q Consensus 212 W~~l~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~--------------------------------~~~~~~~~~~yd~~ 257 (436)
|+++.. .|.....+.++.+++ +||++||.+.. .......+..|||.
T Consensus 125 W~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~ 204 (381)
T COG3055 125 WHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPS 204 (381)
T ss_pred hheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccc
Confidence 999975 466667788888877 99999998421 01134578899999
Q ss_pred CCCeEeCCCCc-cCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECC--CCcEEEcCCCCCCCCCC-CCCCCCEEEEE
Q 013797 258 TKSWDSLPGMR-QRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEY--AGTWYHIPDILKDFPAE-TGKSPPLIAVV 333 (436)
Q Consensus 258 t~~W~~~~~~p-~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~--~~~W~~v~~~~~~~~~~-~~r~~~~~~~~ 333 (436)
++.|+.+...| .++.+.+.+.-++++.++.|.-..+-....+..+|.. ..+|..+.++|...... ....++-.-..
T Consensus 205 ~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s 284 (381)
T COG3055 205 TNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKS 284 (381)
T ss_pred cchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceecccee
Confidence 99999998666 4555655555577788888865544345556666665 45899998877533221 22222222345
Q ss_pred CCEEEEEecC------------------------CCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcC
Q 013797 334 NNELYSLETS------------------------SNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGA 389 (436)
Q Consensus 334 ~g~lyv~gg~------------------------~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG 389 (436)
++.+.+.||. ..+|+++| .+.|+.+..||.. ...++. +..++.||++||
T Consensus 285 ~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~----l~YG~s-~~~nn~vl~IGG 357 (381)
T COG3055 285 NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG----LAYGVS-LSYNNKVLLIGG 357 (381)
T ss_pred CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC----ccceEE-EecCCcEEEEcc
Confidence 6777777752 34678887 8899999999863 233444 378999999999
Q ss_pred CCC
Q 013797 390 SST 392 (436)
Q Consensus 390 ~~~ 392 (436)
...
T Consensus 358 E~~ 360 (381)
T COG3055 358 ETS 360 (381)
T ss_pred ccC
Confidence 986
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=3.2e-14 Score=130.92 Aligned_cols=240 Identities=22% Similarity=0.297 Sum_probs=171.3
Q ss_pred eCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCC--CCEEeCCCCC-CCCcccEEEEeCCEEEEEcCcCC
Q 013797 166 KLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELET--NNWFKGPSMR-RPRCLFASATCGTFAFVAGGHGM 242 (436)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t--~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~ 242 (436)
.+|.+|.+..... -+..++.+||.=| ..+...+..|+.. ..|+++...| .+|.....++++++|||+||...
T Consensus 29 ~lPdlPvg~KnG~----Ga~ig~~~YVGLG-s~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 29 QLPDLPVGFKNGA----GALIGDTVYVGLG-SAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred cCCCCCccccccc----cceecceEEEEec-cCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 4566776655544 4667889998655 3455788888764 4699999887 56888888899999999999864
Q ss_pred CC---CCccceEEEEeCCCCCeEeCCC-CccCCcceeEEEECC-EEEEEeccCCC-------------------------
Q 013797 243 DG---SGVLNSAERYNPETKSWDSLPG-MRQRRKLCSGCYMDN-KFYVIGGRNEK------------------------- 292 (436)
Q Consensus 243 ~~---~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~g-~iyv~gG~~~~------------------------- 292 (436)
.. ....+++++|||.+|+|.++.. .|....++.++.+++ +||++||.+..
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~ 183 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH 183 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Confidence 33 2346789999999999999854 355566777888887 99999997431
Q ss_pred --------CCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC------CCeEEEEECC--CCc
Q 013797 293 --------DKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS------SNELRVYLKD--SNS 356 (436)
Q Consensus 293 --------~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~------~~~i~~yd~~--~~~ 356 (436)
......+..||+.+++|+.+...|. .++++.+++.-++++.++.|. ...++.++.. ..+
T Consensus 184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf-----~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~ 258 (381)
T COG3055 184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF-----YGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLK 258 (381)
T ss_pred HhCCCHHHhcccccccccccccchhhhcCcCcc-----cCccCcceeecCCeEEEEcceecCCccccceeEEEeccCcee
Confidence 0134678899999999999987774 677777666667888888764 3457777765 458
Q ss_pred EEEcccCCCccCCCCCceEEE---EEeCCEEEEEcCCCC------------C------CCCcEEEEeecCCCCCCccCcE
Q 013797 357 WKNLGLVPVRADFNRGWGIAF---KSLGNELLVIGASST------------S------SHESMAIYTCCPSSDAGELQWR 415 (436)
Q Consensus 357 W~~v~~~p~~~~~~~~~~~~~---~~~~~~l~v~GG~~~------------~------~~~~~~~y~~~p~~d~~~~~W~ 415 (436)
|..+..+|.+..... -+++- ...++.+.|.||..- + ....-+||.++ ...|+
T Consensus 259 w~~l~~lp~~~~~~~-eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d------~g~Wk 331 (381)
T COG3055 259 WLKLSDLPAPIGSNK-EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD------NGSWK 331 (381)
T ss_pred eeeccCCCCCCCCCc-cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc------CCcee
Confidence 999998887654332 23321 145788888888542 0 01234666544 45999
Q ss_pred EeecCCC
Q 013797 416 LLECGKR 422 (436)
Q Consensus 416 ~l~~~~~ 422 (436)
.+..+|.
T Consensus 332 ~~GeLp~ 338 (381)
T COG3055 332 IVGELPQ 338 (381)
T ss_pred eecccCC
Confidence 9996644
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.14 E-value=1.3e-10 Score=79.04 Aligned_cols=50 Identities=36% Similarity=0.638 Sum_probs=45.0
Q ss_pred CCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCC
Q 013797 221 PRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRR 271 (436)
Q Consensus 221 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r 271 (436)
||..|++++++++|||+||.... ....+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68899999999999999999874 236889999999999999999999886
No 30
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.14 E-value=2e-08 Score=92.01 Aligned_cols=196 Identities=12% Similarity=0.069 Sum_probs=117.5
Q ss_pred EeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCc---cc-EEEEeC-----CEEEEEcCcCCCCCCccceEEEEe
Q 013797 185 CAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRC---LF-ASATCG-----TFAFVAGGHGMDGSGVLNSAERYN 255 (436)
Q Consensus 185 ~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~---~~-~~~~~~-----~~iyv~GG~~~~~~~~~~~~~~yd 255 (436)
+++|.|++..+ ..+.++||.|++|+.+|+.+.++. .+ ....++ -||..+....... ....+++|+
T Consensus 3 sCnGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~--~~~~~~Vys 76 (230)
T TIGR01640 3 PCDGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR--NQSEHQVYT 76 (230)
T ss_pred ccceEEEEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC--CCccEEEEE
Confidence 45788866543 579999999999999987554311 11 111121 2455554321111 235789999
Q ss_pred CCCCCeEeCCCCccC-CcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEE-cCCCCCCCCCCCCCCCCEEEEE
Q 013797 256 PETKSWDSLPGMRQR-RKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYH-IPDILKDFPAETGKSPPLIAVV 333 (436)
Q Consensus 256 ~~t~~W~~~~~~p~~-r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~-v~~~~~~~~~~~~r~~~~~~~~ 333 (436)
+.+++|+.+...+.. .....++.++|.||.+....... ....|.+||+.+++|.+ ++ +|.... .......++.+
T Consensus 77 ~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~-~P~~~~--~~~~~~~L~~~ 152 (230)
T TIGR01640 77 LGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIP-LPCGNS--DSVDYLSLINY 152 (230)
T ss_pred eCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeee-cCcccc--ccccceEEEEE
Confidence 999999998643322 11223788999999997543211 12279999999999996 54 332111 11224567888
Q ss_pred CCEEEEEecCC----CeEEEEE-CCCCcEEEcccCCC--ccCCCCCceEEEEEeCCEEEEEcCC
Q 013797 334 NNELYSLETSS----NELRVYL-KDSNSWKNLGLVPV--RADFNRGWGIAFKSLGNELLVIGAS 390 (436)
Q Consensus 334 ~g~lyv~gg~~----~~i~~yd-~~~~~W~~v~~~p~--~~~~~~~~~~~~~~~~~~l~v~GG~ 390 (436)
+|+|.++.... -+||+.+ ...++|+++=.++. ............+..+|+|++....
T Consensus 153 ~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~ 216 (230)
T TIGR01640 153 KGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED 216 (230)
T ss_pred CCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence 99998886432 2567664 44567998654442 1111111223344677888887654
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.13 E-value=3.9e-11 Score=114.68 Aligned_cols=184 Identities=15% Similarity=0.125 Sum_probs=134.2
Q ss_pred CCCCCEEeCCCC----------CCCCcccEEEEeCC--EEEEEcCcCCCCCCccceEEEEeCCCCCeEeC---CCCccCC
Q 013797 207 LETNNWFKGPSM----------RRPRCLFASATCGT--FAFVAGGHGMDGSGVLNSAERYNPETKSWDSL---PGMRQRR 271 (436)
Q Consensus 207 p~t~~W~~l~~~----------p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r 271 (436)
+-+-+|.++++. |..|.+|.++...+ .||+.||.++.. .+.+.|.|+...+.|..+ ...|-.|
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ--DLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch--hHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 346678887652 56689999998755 899999999865 688999999999999987 3467888
Q ss_pred cceeEEEECC--EEEEEeccCCCC-----CcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCE--EEEEec
Q 013797 272 KLCSGCYMDN--KFYVIGGRNEKD-----KPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNE--LYSLET 342 (436)
Q Consensus 272 ~~~~~~~~~g--~iyv~gG~~~~~-----~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~--lyv~gg 342 (436)
.-|.++..-. |+|++|-+-+.. ....++|.||..++.|..+.--......|..-+.|++++.+.+ |||+||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 8888887644 899998653221 2456899999999999987632222233456678899998876 999998
Q ss_pred C--------CCeEEEEECCCCcEEEcccC-----C--CccCCCCCceEEEEEeCCEEEEEcCCCC
Q 013797 343 S--------SNELRVYLKDSNSWKNLGLV-----P--VRADFNRGWGIAFKSLGNELLVIGASST 392 (436)
Q Consensus 343 ~--------~~~i~~yd~~~~~W~~v~~~-----p--~~~~~~~~~~~~~~~~~~~l~v~GG~~~ 392 (436)
. ...+++||.....|+.++.- + .....|.++.+....-+..+|++||...
T Consensus 394 r~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 394 RILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred eeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 4 34699999999999987421 1 0112233444444466789999999865
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.02 E-value=9.6e-10 Score=74.72 Aligned_cols=47 Identities=30% Similarity=0.435 Sum_probs=42.7
Q ss_pred CCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCC
Q 013797 270 RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDIL 316 (436)
Q Consensus 270 ~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~ 316 (436)
+|..+++++++++|||+||........+++++||+++++|+.+++||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 57889999999999999998874447899999999999999999998
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.87 E-value=2.9e-09 Score=71.32 Aligned_cols=47 Identities=32% Similarity=0.588 Sum_probs=42.0
Q ss_pred CCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCC
Q 013797 270 RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDIL 316 (436)
Q Consensus 270 ~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~ 316 (436)
+|..+++++++++||++||........+.+++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 57889999999999999999885558899999999999999998875
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.84 E-value=2.7e-09 Score=71.44 Aligned_cols=47 Identities=38% Similarity=0.660 Sum_probs=41.4
Q ss_pred CCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCc
Q 013797 221 PRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMR 268 (436)
Q Consensus 221 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 268 (436)
||..|++++++++||++||.... ....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN-NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST-SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeeccc-CceeeeEEEEeCCCCEEEEcCCCC
Confidence 68899999999999999999872 237899999999999999998876
No 35
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.78 E-value=2.9e-06 Score=77.72 Aligned_cols=199 Identities=10% Similarity=-0.034 Sum_probs=115.2
Q ss_pred CeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEE----eCC-EEEEEcee---cCCCeEEEEECCCCCEEeCCCCCCC-C
Q 013797 152 SSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLC----AGT-HLIVSGNE---IEGGVIWRYELETNNWFKGPSMRRP-R 222 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~----~~~-~iyv~GG~---~~~~~v~~ydp~t~~W~~l~~~p~~-r 222 (436)
..++++||.|++|..+|+.+.+............ .+. +|..+... .....+.+|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 5788999999999999875543211111000111 122 34444322 1235789999999999998743321 1
Q ss_pred cccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEe-CCCCccCC----cceeEEEECCEEEEEeccCCCCCcCC
Q 013797 223 CLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDS-LPGMRQRR----KLCSGCYMDNKFYVIGGRNEKDKPLT 297 (436)
Q Consensus 223 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r----~~~~~~~~~g~iyv~gG~~~~~~~~~ 297 (436)
.....+.++|.+|.+....... ....+..||..+.+|+. ++. |... .....+.++|+|.++...... ..-
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~--~~~~IvsFDl~~E~f~~~i~~-P~~~~~~~~~~~L~~~~G~L~~v~~~~~~--~~~ 168 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTN--PDYFIVSFDVSSERFKEFIPL-PCGNSDSVDYLSLINYKGKLAVLKQKKDT--NNF 168 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCC--CcEEEEEEEcccceEeeeeec-CccccccccceEEEEECCEEEEEEecCCC--CcE
Confidence 1222667899999987543211 11268999999999995 543 3322 134566789999888754321 124
Q ss_pred EEEEEE-CCCCcEEEcCCCCCCCCCCCCC-CCCEEEEECCEEEEEecC--CCeEEEEECCCC
Q 013797 298 CGEAYD-EYAGTWYHIPDILKDFPAETGK-SPPLIAVVNNELYSLETS--SNELRVYLKDSN 355 (436)
Q Consensus 298 ~v~~yD-~~~~~W~~v~~~~~~~~~~~~r-~~~~~~~~~g~lyv~gg~--~~~i~~yd~~~~ 355 (436)
++|+.+ .....|+++-.++......... ..+..+..+|+|++.... ..-+..||++++
T Consensus 169 ~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 169 DLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 567765 4456799865443100000101 112334557888887643 123899999875
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.78 E-value=2.2e-08 Score=67.63 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=41.1
Q ss_pred CCcccEEEEeCCEEEEEcCc-CCCCCCccceEEEEeCCCCCeEeCCCCc
Q 013797 221 PRCLFASATCGTFAFVAGGH-GMDGSGVLNSAERYNPETKSWDSLPGMR 268 (436)
Q Consensus 221 ~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~yd~~t~~W~~~~~~p 268 (436)
||..|++++++++|||+||. ........+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999999999999 3333347889999999999999998775
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.78 E-value=1.9e-08 Score=67.96 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=42.7
Q ss_pred CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEE
Q 013797 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYM 279 (436)
Q Consensus 231 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 279 (436)
+++|||+||........++++++||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 5789999999843344789999999999999999999999999998763
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.75 E-value=2.9e-08 Score=66.97 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=40.9
Q ss_pred CCcceeEEEECCEEEEEecc--CCCCCcCCEEEEEECCCCcEEEcCCCC
Q 013797 270 RRKLCSGCYMDNKFYVIGGR--NEKDKPLTCGEAYDEYAGTWYHIPDIL 316 (436)
Q Consensus 270 ~r~~~~~~~~~g~iyv~gG~--~~~~~~~~~v~~yD~~~~~W~~v~~~~ 316 (436)
+|..|++++++++||++||. .......+++++||+++++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 57889999999999999999 344447889999999999999998874
No 39
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.74 E-value=1.4e-06 Score=79.15 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=99.4
Q ss_pred eEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCC----CCeEeCC-CCccCCccee
Q 013797 201 VIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPET----KSWDSLP-GMRQRRKLCS 275 (436)
Q Consensus 201 ~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~r~~~~ 275 (436)
.-..||+.|++++.+.......+.-.+..-+|++.+.||.... .+.+..|++.+ ..|.+.+ .|..+|..++
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence 4568999999999886533333322223348999999998642 34577888765 5798875 5889998887
Q ss_pred EEEE-CCEEEEEeccCCCCCcCCEEEEEECCCC-----cEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEE
Q 013797 276 GCYM-DNKFYVIGGRNEKDKPLTCGEAYDEYAG-----TWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRV 349 (436)
Q Consensus 276 ~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~~~-----~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~ 349 (436)
+..+ ||+++|+||.... ..+.+..... .|..+..... ..+...+.+..+.-+|+||+++. ..-.+
T Consensus 123 ~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~--~~~~nlYP~~~llPdG~lFi~an--~~s~i 193 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSD--TLPNNLYPFVHLLPDGNLFIFAN--RGSII 193 (243)
T ss_pred ceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhc--cCccccCceEEEcCCCCEEEEEc--CCcEE
Confidence 7755 8999999997632 2233333221 2222221111 11233344455666999999986 46788
Q ss_pred EECCCCcE-EEcccCCCc
Q 013797 350 YLKDSNSW-KNLGLVPVR 366 (436)
Q Consensus 350 yd~~~~~W-~~v~~~p~~ 366 (436)
||+.++++ +.++.+|..
T Consensus 194 ~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred EeCCCCeEEeeCCCCCCC
Confidence 89999977 777777763
No 40
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.69 E-value=1.8e-08 Score=96.80 Aligned_cols=151 Identities=15% Similarity=0.185 Sum_probs=104.5
Q ss_pred CCCeEeCCC----------CccCCcceeEEEECC--EEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCC
Q 013797 258 TKSWDSLPG----------MRQRRKLCSGCYMDN--KFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGK 325 (436)
Q Consensus 258 t~~W~~~~~----------~p~~r~~~~~~~~~g--~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r 325 (436)
+-.|.+++. -|..|.+|-++...+ .||+.||.++.. .+.+.|+|....+.|+.+-.-. ..|..|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t---~~PG~R 313 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDT---EGPGAR 313 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCC---CCCcch
Confidence 456877643 256778899988766 899999999877 7788999999999999875221 113678
Q ss_pred CCCEEEEEC--CEEEEEecC-----------CCeEEEEECCCCcEEEcccCCC-ccCCCCCceEEEEEeCCE--EEEEcC
Q 013797 326 SPPLIAVVN--NELYSLETS-----------SNELRVYLKDSNSWKNLGLVPV-RADFNRGWGIAFKSLGNE--LLVIGA 389 (436)
Q Consensus 326 ~~~~~~~~~--g~lyv~gg~-----------~~~i~~yd~~~~~W~~v~~~p~-~~~~~~~~~~~~~~~~~~--l~v~GG 389 (436)
.+|-+|... .+||++|-+ ..++|+||.+++.|..+.--.. ..-+...+...+++.+.+ |||+||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 888887654 489999854 3479999999999999852111 001112222344466666 999999
Q ss_pred CCC----CCCCcEEEEeecCCCCCCccCcEEee
Q 013797 390 SST----SSHESMAIYTCCPSSDAGELQWRLLE 418 (436)
Q Consensus 390 ~~~----~~~~~~~~y~~~p~~d~~~~~W~~l~ 418 (436)
..- ........| +.+...|+++.
T Consensus 394 r~~~~~e~~f~GLYaf------~~~~~~w~~l~ 420 (723)
T KOG2437|consen 394 RILTCNEPQFSGLYAF------NCQCQTWKLLR 420 (723)
T ss_pred eeccCCCccccceEEE------ecCCccHHHHH
Confidence 754 122344555 46667898875
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.69 E-value=2.4e-08 Score=67.43 Aligned_cols=47 Identities=32% Similarity=0.519 Sum_probs=31.7
Q ss_pred CCcceeEEEE-CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCC
Q 013797 270 RRKLCSGCYM-DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDIL 316 (436)
Q Consensus 270 ~r~~~~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~ 316 (436)
+|..|+++.+ +++||++||.+..+...+++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 5888999988 5999999999877668999999999999999998776
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.64 E-value=3.6e-08 Score=66.61 Aligned_cols=48 Identities=29% Similarity=0.518 Sum_probs=31.1
Q ss_pred CCcccEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCcc
Q 013797 221 PRCLFASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQ 269 (436)
Q Consensus 221 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~ 269 (436)
||..|+++.+ +++||++||.+..+ ..++++++||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-SPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-EE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-cccCCEEEEECCCCEEEECCCCCC
Confidence 6889999998 58999999998653 378899999999999999988773
No 43
>smart00612 Kelch Kelch domain.
Probab=98.62 E-value=7.2e-08 Score=64.27 Aligned_cols=47 Identities=32% Similarity=0.528 Sum_probs=40.9
Q ss_pred EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECC
Q 013797 233 FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDN 281 (436)
Q Consensus 233 ~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g 281 (436)
+||++||..... ..+++++||+.+++|+.+++|+.+|..+++++++|
T Consensus 1 ~iyv~GG~~~~~--~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ--RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc--eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 489999986532 67899999999999999999999999998888765
No 44
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.60 E-value=1.2e-07 Score=63.92 Aligned_cols=48 Identities=29% Similarity=0.442 Sum_probs=41.3
Q ss_pred CCEEEEEeccC-CCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEE
Q 013797 280 DNKFYVIGGRN-EKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVV 333 (436)
Q Consensus 280 ~g~iyv~gG~~-~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~ 333 (436)
+++|||+||.+ ......+++++||+.+++|++++++| .+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P------~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLP------PPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCC------CCccceEEEEC
Confidence 58999999988 34458899999999999999998777 79999998763
No 45
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.54 E-value=4.8e-08 Score=65.30 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=37.6
Q ss_pred CCCChHHHHHHhhccCCcccccccccccHhhhhhhccchhHHH
Q 013797 91 VPSLSDELEVLIVARVPRAEYWKFYLLNKRFLSLLKSGELFKI 133 (436)
Q Consensus 91 ~~~LPddl~~~ILarLP~~~l~~~~~Vck~w~~li~s~~f~~~ 133 (436)
|..||+|++.+||..||..++.++..|||+|+.++.++.+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5689999999999999999999999999999999998877654
No 46
>smart00612 Kelch Kelch domain.
Probab=98.40 E-value=6.3e-07 Score=59.61 Aligned_cols=47 Identities=34% Similarity=0.575 Sum_probs=39.8
Q ss_pred EEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC
Q 013797 282 KFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN 335 (436)
Q Consensus 282 ~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g 335 (436)
+||++||..... ..+.+++||+.+++|+.+++|+ .+|..+++++++|
T Consensus 1 ~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~~------~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ-RLKSVEVYDPETNKWTPLPSMP------TPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc-eeeeEEEECCCCCeEccCCCCC------CccccceEEEeCC
Confidence 489999986533 6789999999999999999998 6888888888765
No 47
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.38 E-value=5.7e-05 Score=72.70 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=33.7
Q ss_pred CCCCChHHHHHHhhccCC-cccccccccccHhhhhhhcc
Q 013797 90 FVPSLSDELEVLIVARVP-RAEYWKFYLLNKRFLSLLKS 127 (436)
Q Consensus 90 ~~~~LPddl~~~ILarLP-~~~l~~~~~Vck~w~~li~s 127 (436)
.|+.||+||+..|..||| ..++.+||+||++||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 489999999999999995 56789999999999987654
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.38 E-value=1.2e-05 Score=72.99 Aligned_cols=146 Identities=18% Similarity=0.257 Sum_probs=99.3
Q ss_pred EEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCC-CeEEEEECCC----CCEEeCC-CCCCCCcccEE
Q 013797 154 WWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEG-GVIWRYELET----NNWFKGP-SMRRPRCLFAS 227 (436)
Q Consensus 154 ~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~-~~v~~ydp~t----~~W~~l~-~~p~~r~~~~~ 227 (436)
-..||+.++++..+.......|... +...+|.+++.||...+ ..+..|+|.+ ..|.+.+ .|..+|-+.++
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg----~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGG----AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCc----CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 3479999999998865544444443 45568899999997655 5678899876 5798886 48889988777
Q ss_pred EEe-CCEEEEEcCcCCCCCCccceEEEEeCCCC-----CeEeCCC----CccCCcceeEEEECCEEEEEeccCCCCCcCC
Q 013797 228 ATC-GTFAFVAGGHGMDGSGVLNSAERYNPETK-----SWDSLPG----MRQRRKLCSGCYMDNKFYVIGGRNEKDKPLT 297 (436)
Q Consensus 228 ~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~-----~W~~~~~----~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~ 297 (436)
..+ +|+++|+||.... ..|.+.+... .|..+.. .+...+-+....=+|+|++++..
T Consensus 124 ~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------- 189 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------- 189 (243)
T ss_pred eECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------
Confidence 776 8899999998732 2444443221 1222222 12222233334459999999853
Q ss_pred EEEEEECCCCcE-EEcCCCCC
Q 013797 298 CGEAYDEYAGTW-YHIPDILK 317 (436)
Q Consensus 298 ~v~~yD~~~~~W-~~v~~~~~ 317 (436)
....||..++++ +.++.+|.
T Consensus 190 ~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 190 GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred CcEEEeCCCCeEEeeCCCCCC
Confidence 348899999987 78888884
No 49
>PLN02772 guanylate kinase
Probab=98.30 E-value=5.9e-06 Score=79.72 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=68.2
Q ss_pred CCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeC---CCCccCCcceeEEEE-CCEEEEEeccCCCCCc
Q 013797 220 RPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL---PGMRQRRKLCSGCYM-DNKFYVIGGRNEKDKP 295 (436)
Q Consensus 220 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~-~g~iyv~gG~~~~~~~ 295 (436)
.++..++++.+++++||+||.+... ...+.+++||..+++|... +..|.+|.+|+++++ +++|+|+++....
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~-~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGN-TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCc-cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 4788899999999999999977642 2568999999999999864 677999999999988 6899999865433
Q ss_pred CCEEEEEECCCC
Q 013797 296 LTCGEAYDEYAG 307 (436)
Q Consensus 296 ~~~v~~yD~~~~ 307 (436)
..++|.+...|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 367788777654
No 50
>PLN02772 guanylate kinase
Probab=98.19 E-value=1.5e-05 Score=76.95 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=66.5
Q ss_pred cCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEE-CCEEEEEecC---C
Q 013797 269 QRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVV-NNELYSLETS---S 344 (436)
Q Consensus 269 ~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~---~ 344 (436)
.++..++++.+++++||+||.+..+...+.+++||..+++|....-.. ..|.+|.+|+++++ +++|+++++. .
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G---~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLG---TGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccC---CCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 466778999999999999998776546789999999999998765322 22478999999988 5799999742 3
Q ss_pred CeEEEEECCCC
Q 013797 345 NELRVYLKDSN 355 (436)
Q Consensus 345 ~~i~~yd~~~~ 355 (436)
.++|.+...|.
T Consensus 100 ~~~w~l~~~t~ 110 (398)
T PLN02772 100 DSIWFLEVDTP 110 (398)
T ss_pred cceEEEEcCCH
Confidence 47888887763
No 51
>PF13854 Kelch_5: Kelch motif
Probab=98.17 E-value=5.4e-06 Score=53.73 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=35.4
Q ss_pred CCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCC
Q 013797 218 MRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETK 259 (436)
Q Consensus 218 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 259 (436)
+|.+|..|++++++++||++||.........+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 478999999999999999999998522347899999998763
No 52
>PF13854 Kelch_5: Kelch motif
Probab=98.15 E-value=5.5e-06 Score=53.70 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=35.2
Q ss_pred CccCCcceeEEEECCEEEEEeccCC-CCCcCCEEEEEECCC
Q 013797 267 MRQRRKLCSGCYMDNKFYVIGGRNE-KDKPLTCGEAYDEYA 306 (436)
Q Consensus 267 ~p~~r~~~~~~~~~g~iyv~gG~~~-~~~~~~~v~~yD~~~ 306 (436)
+|.+|..|++++++++||++||... .....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999984 555889999999876
No 53
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.14 E-value=7.6e-07 Score=57.43 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=36.7
Q ss_pred ChHHHHHHhhccCCcccccccccccHhhhhhhccchhHH
Q 013797 94 LSDELEVLIVARVPRAEYWKFYLLNKRFLSLLKSGELFK 132 (436)
Q Consensus 94 LPddl~~~ILarLP~~~l~~~~~Vck~w~~li~s~~f~~ 132 (436)
||+|++.+|+.+|+..++.+++.|||+|+.++.++.++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988764
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.12 E-value=7.9e-05 Score=69.00 Aligned_cols=278 Identities=14% Similarity=0.117 Sum_probs=144.3
Q ss_pred CCCCCCh----HHHHHHhhccCCcccccccccccHhhhhhhccchhHHHH------------hhcCccCCeEEEeccCCC
Q 013797 89 SFVPSLS----DELEVLIVARVPRAEYWKFYLLNKRFLSLLKSGELFKIR------------REIGFREPSVFMLASGDS 152 (436)
Q Consensus 89 ~~~~~LP----ddl~~~ILarLP~~~l~~~~~Vck~w~~li~s~~f~~~~------------~~~~~~~~~l~~~~~~~~ 152 (436)
.++..|| +++.++||+.|...+|..+.+|||+|+.++.++-+++.- +......+-.++|....+
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~~ 152 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRPN 152 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCCCC
Confidence 4677899 999999999999999999999999999999999887652 111122222333332111
Q ss_pred eEEEEec-----------------CCCCeEeCCCCCC----CCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCC
Q 013797 153 SWWAFDR-----------------HFQTRRKLPELPS----DPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNN 211 (436)
Q Consensus 153 ~~~~~dp-----------------~~~~W~~l~~~~~----~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~ 211 (436)
.. .++| ..+.|..-..+-. +....-+ -.++..++.+.|.|- ..+++-++|-.+..
T Consensus 153 ~~-~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skg-VYClQYDD~kiVSGl--rDnTikiWD~n~~~ 228 (499)
T KOG0281|consen 153 DG-GFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKG-VYCLQYDDEKIVSGL--RDNTIKIWDKNSLE 228 (499)
T ss_pred cC-CcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCc-eEEEEecchhhhccc--ccCceEEeccccHH
Confidence 00 0111 1233432211111 1000000 012233444444442 23566666654433
Q ss_pred EEeCCCCCCCCcccEE-EEeCCEEEEEcCcCCCCCCccceEEEEeCCCC-------------------------------
Q 013797 212 WFKGPSMRRPRCLFAS-ATCGTFAFVAGGHGMDGSGVLNSAERYNPETK------------------------------- 259 (436)
Q Consensus 212 W~~l~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~------------------------------- 259 (436)
-.++ ..+..+... --++.++.+.|..+. ++.++|..++
T Consensus 229 c~~~---L~GHtGSVLCLqyd~rviisGSSDs-------TvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrs 298 (499)
T KOG0281|consen 229 CLKI---LTGHTGSVLCLQYDERVIVSGSSDS-------TVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRS 298 (499)
T ss_pred HHHh---hhcCCCcEEeeeccceEEEecCCCc-------eEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCce
Confidence 2111 111112122 224677766665431 2333333332
Q ss_pred --CeEeCCCCc-----c---CCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCE
Q 013797 260 --SWDSLPGMR-----Q---RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPL 329 (436)
Q Consensus 260 --~W~~~~~~p-----~---~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~ 329 (436)
.|...++.. . .|..-..+-+++| |++.... -..+-+++..+..... .+. ..+.+.+
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASg-----DRTikvW~~st~efvR--tl~------gHkRGIA 364 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASG-----DRTIKVWSTSTCEFVR--TLN------GHKRGIA 364 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecC-----CceEEEEeccceeeeh--hhh------cccccce
Confidence 144333211 0 1111122335677 4443211 2346677777766543 332 3445666
Q ss_pred EEEECCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecC
Q 013797 330 IAVVNNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCP 405 (436)
Q Consensus 330 ~~~~~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p 405 (436)
..-++|++.+-|.+.++|..||.+.+.--.+-.--+. -+-++-.+++=+|-||+++ .+.+|.+..
T Consensus 365 ClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-------LvRciRFd~krIVSGaYDG----kikvWdl~a 429 (499)
T KOG0281|consen 365 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-------LVRCIRFDNKRIVSGAYDG----KIKVWDLQA 429 (499)
T ss_pred ehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH-------hhhheeecCceeeeccccc----eEEEEeccc
Confidence 6778999999998899999999998765444110000 0223356777788888873 666774443
No 55
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.11 E-value=5.7e-07 Score=60.35 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=36.6
Q ss_pred CCCChHHHHHHhhccCCcccccccccccHhhhhhhccchhHHH
Q 013797 91 VPSLSDELEVLIVARVPRAEYWKFYLLNKRFLSLLKSGELFKI 133 (436)
Q Consensus 91 ~~~LPddl~~~ILarLP~~~l~~~~~Vck~w~~li~s~~f~~~ 133 (436)
|..||+|++.+|+.+|+..++.+++.|||+|+.++.+..++..
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 4579999999999999999999999999999999999887654
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.85 E-value=0.025 Score=56.11 Aligned_cols=213 Identities=12% Similarity=0.078 Sum_probs=121.7
Q ss_pred CCeEEEEecCCC--CeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCCCC--CCcc
Q 013797 151 DSSWWAFDRHFQ--TRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSMRR--PRCL 224 (436)
Q Consensus 151 ~~~~~~~dp~~~--~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~--~r~~ 224 (436)
...++++|..++ .|+.-. +.... .+-+..++.+|+..+ ...++.+|+.|++ |+.-...+. .+..
T Consensus 129 ~g~l~ald~~tG~~~W~~~~--~~~~~-----ssP~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKV--AGEAL-----SRPVVSDGLVLVHTS---NGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEECCCCCCcccccC--CCcee-----cCCEEECCEEEEECC---CCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 457899998775 476432 21111 113456888887543 3479999999987 876433221 1222
Q ss_pred cEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeCCCCccC-----C---cceeEEEECCEEEEEeccCCCCC
Q 013797 225 FASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSLPGMRQR-----R---KLCSGCYMDNKFYVIGGRNEKDK 294 (436)
Q Consensus 225 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~-----r---~~~~~~~~~g~iyv~gG~~~~~~ 294 (436)
.+.++.++.+|+..+. ..+..+|+.+++ |+.--..+.. + ...+.++.++.+|+.+.
T Consensus 199 ~sP~v~~~~v~~~~~~--------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~------ 264 (394)
T PRK11138 199 SAPATAFGGAIVGGDN--------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY------ 264 (394)
T ss_pred CCCEEECCEEEEEcCC--------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc------
Confidence 2334457777775432 246778888765 8642111111 1 12334567999998752
Q ss_pred cCCEEEEEECCCC--cEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cEEEcccCCCccCCC
Q 013797 295 PLTCGEAYDEYAG--TWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSN--SWKNLGLVPVRADFN 370 (436)
Q Consensus 295 ~~~~v~~yD~~~~--~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~--~W~~v~~~p~~~~~~ 370 (436)
...++++|+.++ .|+.-. . .. ...++.+++||+... .+.++++|+++. .|+.-. +.. +
T Consensus 265 -~g~l~ald~~tG~~~W~~~~--~------~~---~~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~-~~~----~ 326 (394)
T PRK11138 265 -NGNLVALDLRSGQIVWKREY--G------SV---NDFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSD-LLH----R 326 (394)
T ss_pred -CCeEEEEECCCCCEEEeecC--C------Cc---cCcEEECCEEEEEcC-CCeEEEEECCCCcEEEcccc-cCC----C
Confidence 246899999887 487521 1 11 124667899998753 578999999876 486421 111 1
Q ss_pred CCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCCCCccCcEE
Q 013797 371 RGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSDAGELQWRL 416 (436)
Q Consensus 371 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W~~ 416 (436)
...+.+ ..+++||+..... .+|.+++. .++..|+.
T Consensus 327 ~~~sp~--v~~g~l~v~~~~G-------~l~~ld~~--tG~~~~~~ 361 (394)
T PRK11138 327 LLTAPV--LYNGYLVVGDSEG-------YLHWINRE--DGRFVAQQ 361 (394)
T ss_pred cccCCE--EECCEEEEEeCCC-------EEEEEECC--CCCEEEEE
Confidence 111223 5688888754322 24444554 24556754
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.65 E-value=0.061 Score=53.39 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=112.8
Q ss_pred CCCeEEEEecCCCC--eEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCCCCC----
Q 013797 150 GDSSWWAFDRHFQT--RRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSMRRP---- 221 (436)
Q Consensus 150 ~~~~~~~~dp~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~~---- 221 (436)
....++++|+.+++ |..-...+..... ...+-+..++.+|+..+ ...++.+|+.+++ |+.--..+..
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~--~~~sP~v~~~~v~~~~~---~g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLR--GESAPATAFGGAIVGGD---NGRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCccccc--CCCCCEEECCEEEEEcC---CCEEEEEEccCChhhheeccccCCCccch
Confidence 45679999998766 7653322211000 00112445677777543 3468889998876 7642211111
Q ss_pred -C---cccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeCCCCccCCcceeEEEECCEEEEEeccCCCCCc
Q 013797 222 -R---CLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKP 295 (436)
Q Consensus 222 -r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~ 295 (436)
+ ...+.++.++.+|+.+.. ..+..+|+.+++ |+.- .... ...++.+++||+...
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~~--------g~l~ald~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~------- 302 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAYN--------GNLVALDLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQ------- 302 (394)
T ss_pred hcccccCCCcEEECCEEEEEEcC--------CeEEEEECCCCCEEEeec--CCCc---cCcEEECCEEEEEcC-------
Confidence 1 112334568899986531 247889998876 8753 1111 134667999999763
Q ss_pred CCEEEEEECCCC--cEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCc--EEEcccCCCccCCCC
Q 013797 296 LTCGEAYDEYAG--TWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNS--WKNLGLVPVRADFNR 371 (436)
Q Consensus 296 ~~~v~~yD~~~~--~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~--W~~v~~~p~~~~~~~ 371 (436)
...++++|..++ .|+.-. .. .+.....++.+|+||+.. ..+.++++|+++.+ |+. .++.. ..
T Consensus 303 ~g~l~ald~~tG~~~W~~~~-~~-------~~~~~sp~v~~g~l~v~~-~~G~l~~ld~~tG~~~~~~--~~~~~---~~ 368 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSD-LL-------HRLLTAPVLYNGYLVVGD-SEGYLHWINREDGRFVAQQ--KVDSS---GF 368 (394)
T ss_pred CCeEEEEECCCCcEEEcccc-cC-------CCcccCCEEECCEEEEEe-CCCEEEEEECCCCCEEEEE--EcCCC---cc
Confidence 346899999877 486421 11 111222356789998764 45789999998875 544 11110 11
Q ss_pred CceEEEEEeCCEEEEEc
Q 013797 372 GWGIAFKSLGNELLVIG 388 (436)
Q Consensus 372 ~~~~~~~~~~~~l~v~G 388 (436)
. ...+..+++|||-.
T Consensus 369 ~--s~P~~~~~~l~v~t 383 (394)
T PRK11138 369 L--SEPVVADDKLLIQA 383 (394)
T ss_pred e--eCCEEECCEEEEEe
Confidence 1 12225788888764
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.58 E-value=0.017 Score=55.98 Aligned_cols=120 Identities=22% Similarity=0.333 Sum_probs=82.0
Q ss_pred eCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCc-----cceEEEEeC----
Q 013797 186 AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGV-----LNSAERYNP---- 256 (436)
Q Consensus 186 ~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~-----~~~~~~yd~---- 256 (436)
.+.+|+.++.. ....+||..|..-..+|.++.+.....++.++++||++.......... ...+..|++
T Consensus 75 ~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~ 151 (342)
T PF07893_consen 75 HGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD 151 (342)
T ss_pred cCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence 58899988654 458999999999999999888777777777899999998764332100 223444452
Q ss_pred ----CCCCeEeCCCCccCCcc-------eeEEEE-CCEEEE-EeccCCCCCcCCEEEEEECCCCcEEEcCC
Q 013797 257 ----ETKSWDSLPGMRQRRKL-------CSGCYM-DNKFYV-IGGRNEKDKPLTCGEAYDEYAGTWYHIPD 314 (436)
Q Consensus 257 ----~t~~W~~~~~~p~~r~~-------~~~~~~-~g~iyv-~gG~~~~~~~~~~v~~yD~~~~~W~~v~~ 314 (436)
..-.|+.+|++|..+.. .+-+++ +..|+| +.+.. ...++||+.+.+|+.+..
T Consensus 152 ~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 152 PSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred ccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccc
Confidence 12258888876644432 234455 566877 33211 247999999999999974
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.54 E-value=0.033 Score=50.70 Aligned_cols=180 Identities=22% Similarity=0.286 Sum_probs=107.5
Q ss_pred CeEEEeccCCCeEEEEecCCCC--eEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCC--EE-eCC
Q 013797 142 PSVFMLASGDSSWWAFDRHFQT--RRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNN--WF-KGP 216 (436)
Q Consensus 142 ~~l~~~~~~~~~~~~~dp~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~-~l~ 216 (436)
..+|+. .....++++|+.+++ |..- ++.+.... .+..++.||+... .+.++.+|..+++ |+ ...
T Consensus 37 ~~v~~~-~~~~~l~~~d~~tG~~~W~~~--~~~~~~~~-----~~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 37 GRVYVA-SGDGNLYALDAKTGKVLWRFD--LPGPISGA-----PVVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp TEEEEE-ETTSEEEEEETTTSEEEEEEE--CSSCGGSG-----EEEETTEEEEEET---TSEEEEEETTTSCEEEEEEE-
T ss_pred CEEEEE-cCCCEEEEEECCCCCEEEEee--ccccccce-----eeecccccccccc---eeeeEecccCCcceeeeeccc
Confidence 334444 356789999998765 5443 22221111 3677889988752 2389999988887 88 443
Q ss_pred CCCCC--CcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeCCCCccCCc--------ceeEEEECCEEE
Q 013797 217 SMRRP--RCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSLPGMRQRRK--------LCSGCYMDNKFY 284 (436)
Q Consensus 217 ~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~--------~~~~~~~~g~iy 284 (436)
..+.. .......+.++.+|+... ...+..+|+.+++ |+.-...+.... ....+..++.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTS--------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEET--------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred cccccccccccCceEecCEEEEEec--------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 32222 233344445777777653 2358999999886 765333332111 123344468888
Q ss_pred EEeccCCCCCcCCEEEEEECCCCc--EEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCc--EE
Q 013797 285 VIGGRNEKDKPLTCGEAYDEYAGT--WYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNS--WK 358 (436)
Q Consensus 285 v~gG~~~~~~~~~~v~~yD~~~~~--W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~--W~ 358 (436)
+..+.. .+..+|..+++ |+.. +. . ........++.||+.. ..+.+.++|+++++ |+
T Consensus 178 ~~~~~g-------~~~~~d~~tg~~~w~~~--~~------~--~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 178 VSSGDG-------RVVAVDLATGEKLWSKP--IS------G--IYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EECCTS-------SEEEEETTTTEEEEEEC--SS---------ECECEECCCTEEEEEE-TTTEEEEEETTTTEEEEE
T ss_pred EEcCCC-------eEEEEECCCCCEEEEec--CC------C--ccCCceeeCCEEEEEe-CCCEEEEEECCCCCEEeE
Confidence 876522 25666999996 8443 22 1 1111345577888887 67899999999874 64
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.53 E-value=0.0042 Score=60.24 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=80.7
Q ss_pred eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcC----CEEEEE--E
Q 013797 230 CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPL----TCGEAY--D 303 (436)
Q Consensus 230 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~----~~v~~y--D 303 (436)
.+++|+.++.. ..+.+||.++..-...|.++.+.....++.++++||++.......... ..++++ +
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 58899888654 237899999999888888877776777778899999998754332110 144544 4
Q ss_pred C--------CCCcEEEcCCCCCCCCCC-CCCCCCEEEEE-CCEEEE-EecCCCeEEEEECCCCcEEEccc
Q 013797 304 E--------YAGTWYHIPDILKDFPAE-TGKSPPLIAVV-NNELYS-LETSSNELRVYLKDSNSWKNLGL 362 (436)
Q Consensus 304 ~--------~~~~W~~v~~~~~~~~~~-~~r~~~~~~~~-~g~lyv-~gg~~~~i~~yd~~~~~W~~v~~ 362 (436)
. ..-.|+.+++.|...... ..+.-.+.+++ +..|+| +.+.....+.||..+.+|++++.
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 2 223788888766322110 00003344555 557777 33322358999999999999974
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.45 E-value=0.14 Score=50.39 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=108.3
Q ss_pred CCCeEEEEecCCCC--eEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCCCCCC---
Q 013797 150 GDSSWWAFDRHFQT--RRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSMRRPR--- 222 (436)
Q Consensus 150 ~~~~~~~~dp~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~~r--- 222 (436)
....++++|+.+++ |..-...+... .....+.+..++.+|+.. ....++.+|+.+++ |+.--..+...
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~--~~~~~sp~~~~~~v~~~~---~~g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALT--LRGSASPVIADGGVLVGF---AGGKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCcee--ecCCCCCEEECCEEEEEC---CCCEEEEEEccCCCEeeeeccccCCCCCch
Confidence 35678999998754 65432211100 000012345567666532 23478999998875 76432212111
Q ss_pred -----cccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeCCCCccCCcceeEEEECCEEEEEeccCCCCCc
Q 013797 223 -----CLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKP 295 (436)
Q Consensus 223 -----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~ 295 (436)
...+.+..++.+|+.+.. ..+..||+.+++ |+.-. . .....++.++++|+...
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~~~--------g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~~------- 287 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVSYQ--------GRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTDA------- 287 (377)
T ss_pred hhhhccCCccEEECCEEEEEEcC--------CEEEEEECCCCcEEEeecc--C---CccCceEeCCEEEEECC-------
Confidence 112234457888886431 248889998775 76531 1 12234567899998752
Q ss_pred CCEEEEEECCCC--cEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCc--EEEcccCCCccCCCC
Q 013797 296 LTCGEAYDEYAG--TWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNS--WKNLGLVPVRADFNR 371 (436)
Q Consensus 296 ~~~v~~yD~~~~--~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~--W~~v~~~p~~~~~~~ 371 (436)
...++++|..++ .|+.-. +. .+.....+..++.||+.+ ..+.++++|.++.+ |+.- ++.. ..
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~-~~-------~~~~ssp~i~g~~l~~~~-~~G~l~~~d~~tG~~~~~~~--~~~~---~~ 353 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDE-LK-------YRQLTAPAVVGGYLVVGD-FEGYLHWLSREDGSFVARLK--TDGS---GI 353 (377)
T ss_pred CCeEEEEECCCCcEEEcccc-cc-------CCccccCEEECCEEEEEe-CCCEEEEEECCCCCEEEEEE--cCCC---cc
Confidence 346899999876 476421 21 111122245678888764 46789999987753 4331 1110 01
Q ss_pred CceEEEEEeCCEEEEEcC
Q 013797 372 GWGIAFKSLGNELLVIGA 389 (436)
Q Consensus 372 ~~~~~~~~~~~~l~v~GG 389 (436)
. ...+..+++||+.+.
T Consensus 354 ~--~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 354 A--SPPVVVGDGLLVQTR 369 (377)
T ss_pred c--cCCEEECCEEEEEeC
Confidence 1 122367888886654
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.24 E-value=0.24 Score=48.73 Aligned_cols=199 Identities=16% Similarity=0.082 Sum_probs=109.1
Q ss_pred CCeEEEEecCCCC--eEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCCCCCCcccE
Q 013797 151 DSSWWAFDRHFQT--RRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSMRRPRCLFA 226 (436)
Q Consensus 151 ~~~~~~~dp~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~~r~~~~ 226 (436)
...+++||+.+++ |..-.. .... . ..+..++.+|+.+. ...++.+|+.+++ |+.-.. .. ...+
T Consensus 74 ~g~v~a~d~~tG~~~W~~~~~--~~~~--~---~p~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~--~~-~~~~ 140 (377)
T TIGR03300 74 DGTVVALDAETGKRLWRVDLD--ERLS--G---GVGADGGLVFVGTE---KGEVIALDAEDGKELWRAKLS--SE-VLSP 140 (377)
T ss_pred CCeEEEEEccCCcEeeeecCC--CCcc--c---ceEEcCCEEEEEcC---CCEEEEEECCCCcEeeeeccC--ce-eecC
Confidence 4578999987655 754222 1111 1 13455788887542 3579999998876 875422 11 1122
Q ss_pred EEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeCCCCcc--CCcceeEEEECCEEEEEeccCCCCCcCCEEEEE
Q 013797 227 SATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSLPGMRQ--RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAY 302 (436)
Q Consensus 227 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~y 302 (436)
.+..++.+|+..+. ..+..+|+.+++ |+.-...+. .+...+.++.++.+|+ +. ....+..+
T Consensus 141 p~v~~~~v~v~~~~--------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~------~~g~v~al 205 (377)
T TIGR03300 141 PLVANGLVVVRTND--------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GF------AGGKLVAL 205 (377)
T ss_pred CEEECCEEEEECCC--------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-EC------CCCEEEEE
Confidence 33457788775431 248889998765 875422221 1222344566776654 32 12368899
Q ss_pred ECCCC--cEEEcCCCCCCCCCC--CCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cEEEcccCCCccCCCCCceEE
Q 013797 303 DEYAG--TWYHIPDILKDFPAE--TGKSPPLIAVVNNELYSLETSSNELRVYLKDSN--SWKNLGLVPVRADFNRGWGIA 376 (436)
Q Consensus 303 D~~~~--~W~~v~~~~~~~~~~--~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~--~W~~v~~~p~~~~~~~~~~~~ 376 (436)
|+.++ .|+.-...+...... ........++.++.+|+.. ..+.+.+||+++. .|+.- .+. . ..
T Consensus 206 d~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~~W~~~--~~~------~--~~ 274 (377)
T TIGR03300 206 DLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRVLWKRD--ASS------Y--QG 274 (377)
T ss_pred EccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE-cCCEEEEEECCCCcEEEeec--cCC------c--cC
Confidence 98876 576432211100000 0001122345678888865 3578999999875 47653 111 1 12
Q ss_pred EEEeCCEEEEEc
Q 013797 377 FKSLGNELLVIG 388 (436)
Q Consensus 377 ~~~~~~~l~v~G 388 (436)
.+..+++||+..
T Consensus 275 p~~~~~~vyv~~ 286 (377)
T TIGR03300 275 PAVDDNRLYVTD 286 (377)
T ss_pred ceEeCCEEEEEC
Confidence 225688888875
No 63
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.05 E-value=0.18 Score=46.27 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCCCCCCCcccEEEEe--C--CEEEEEcCcCCC--C----------CCccceEEEEeCCCCCeE--eCCCCccCCcceeE
Q 013797 215 GPSMRRPRCLFASATC--G--TFAFVAGGHGMD--G----------SGVLNSAERYNPETKSWD--SLPGMRQRRKLCSG 276 (436)
Q Consensus 215 l~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~--~----------~~~~~~~~~yd~~t~~W~--~~~~~p~~r~~~~~ 276 (436)
+...|.+|++|++.++ . ....+|||..-. + -.....++.+|++-+..+ .++.+..+..+|.+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS 160 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence 4678999999998776 2 246778886311 0 013456788898887765 45777788888988
Q ss_pred EEECCEEEEEeccCC
Q 013797 277 CYMDNKFYVIGGRNE 291 (436)
Q Consensus 277 ~~~~g~iyv~gG~~~ 291 (436)
..-++.+|++||+.-
T Consensus 161 lar~D~VYilGGHsl 175 (337)
T PF03089_consen 161 LARNDCVYILGGHSL 175 (337)
T ss_pred EecCceEEEEccEEc
Confidence 899999999999743
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.02 E-value=0.25 Score=44.83 Aligned_cols=192 Identities=15% Similarity=0.178 Sum_probs=109.2
Q ss_pred EEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC-
Q 013797 184 LCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS- 260 (436)
Q Consensus 184 ~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~- 260 (436)
+..++.+|+.. ....++.+|+.|++ |+.-. +.+.... ....++.+|+..+. ..+..+|..+++
T Consensus 33 ~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~~~~v~v~~~~--------~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 33 VPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDL--PGPISGA-PVVDGGRVYVGTSD--------GSLYALDAKTGKV 98 (238)
T ss_dssp EEETTEEEEEE---TTSEEEEEETTTSEEEEEEEC--SSCGGSG-EEEETTEEEEEETT--------SEEEEEETTTSCE
T ss_pred EEeCCEEEEEc---CCCEEEEEECCCCCEEEEeec--cccccce-eeecccccccccce--------eeeEecccCCcce
Confidence 34789999873 45689999999987 66543 2222222 36678999888621 268999988876
Q ss_pred -eE-eCCCCcc--CCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC--cEEEcCCCCCCCC-CC-CCCCCCEEEE
Q 013797 261 -WD-SLPGMRQ--RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG--TWYHIPDILKDFP-AE-TGKSPPLIAV 332 (436)
Q Consensus 261 -W~-~~~~~p~--~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~--~W~~v~~~~~~~~-~~-~~r~~~~~~~ 332 (436)
|+ .....+. ........+.++.+|+... ...+.++|++++ .|..-...+.... .. ........+.
T Consensus 99 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (238)
T PF13360_consen 99 LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI 171 (238)
T ss_dssp EEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC
T ss_pred eeeeccccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE
Confidence 98 4433222 2223344555777877652 457899999987 4776444431100 00 0001122333
Q ss_pred ECCEEEEEecCCCeEEEEECCCCc--EEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCCCC
Q 013797 333 VNNELYSLETSSNELRVYLKDSNS--WKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSDAG 410 (436)
Q Consensus 333 ~~g~lyv~gg~~~~i~~yd~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~ 410 (436)
.++.+|+..+. +.+..+|.++++ |+.. +.. ........++.||+.. .. .. ++.+|+. .+
T Consensus 172 ~~~~v~~~~~~-g~~~~~d~~tg~~~w~~~--~~~-------~~~~~~~~~~~l~~~~-~~----~~--l~~~d~~--tG 232 (238)
T PF13360_consen 172 SDGRVYVSSGD-GRVVAVDLATGEKLWSKP--ISG-------IYSLPSVDGGTLYVTS-SD----GR--LYALDLK--TG 232 (238)
T ss_dssp CTTEEEEECCT-SSEEEEETTTTEEEEEEC--SS--------ECECEECCCTEEEEEE-TT----TE--EEEEETT--TT
T ss_pred ECCEEEEEcCC-CeEEEEECCCCCEEEEec--CCC-------ccCCceeeCCEEEEEe-CC----CE--EEEEECC--CC
Confidence 46788887653 336666999986 8442 111 1121336778888876 32 23 4444554 33
Q ss_pred ccCcE
Q 013797 411 ELQWR 415 (436)
Q Consensus 411 ~~~W~ 415 (436)
+..|.
T Consensus 233 ~~~W~ 237 (238)
T PF13360_consen 233 KVVWQ 237 (238)
T ss_dssp EEEEE
T ss_pred CEEeE
Confidence 44575
No 65
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.96 E-value=0.016 Score=53.22 Aligned_cols=187 Identities=12% Similarity=0.053 Sum_probs=112.2
Q ss_pred eCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCC
Q 013797 186 AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLP 265 (436)
Q Consensus 186 ~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~ 265 (436)
.+|.+|..-|....+.+.++|+.|++-.+..++|..-.+-.++.++++||.+-= .....++||+.+ .+.+.
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW-------k~~~~f~yd~~t--l~~~~ 124 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW-------KEGTGFVYDPNT--LKKIG 124 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES-------SSSEEEEEETTT--TEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe-------cCCeEEEEcccc--ceEEE
Confidence 688999888877788999999999997776677766666788889999999842 234689999975 45555
Q ss_pred CCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCC
Q 013797 266 GMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSN 345 (436)
Q Consensus 266 ~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~ 345 (436)
..+.+..+-+.+..+..+++-.| .+.++.+||++-+=..--.... ...+.. .---+-.++|.||.==-..+
T Consensus 125 ~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~-~g~pv~-~LNELE~i~G~IyANVW~td 195 (264)
T PF05096_consen 125 TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTD-NGRPVS-NLNELEYINGKIYANVWQTD 195 (264)
T ss_dssp EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EE-TTEE----EEEEEEETTEEEEEETTSS
T ss_pred EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEE-CCEECC-CcEeEEEEcCEEEEEeCCCC
Confidence 55555567777777777888776 4578899987643221101100 000010 11123345777777655678
Q ss_pred eEEEEECCCCc---EEEcccCCCc--------cCCCCCceEEEEEeCCEEEEEcCC
Q 013797 346 ELRVYLKDSNS---WKNLGLVPVR--------ADFNRGWGIAFKSLGNELLVIGAS 390 (436)
Q Consensus 346 ~i~~yd~~~~~---W~~v~~~p~~--------~~~~~~~~~~~~~~~~~l~v~GG~ 390 (436)
.|.+-||++++ |-.+..+-.. +....-.|.|.-.-.+++||.|-.
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 89999999986 4444322110 001122445544467889988853
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.89 E-value=0.061 Score=49.53 Aligned_cols=174 Identities=18% Similarity=0.128 Sum_probs=97.4
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeC
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL 264 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~ 264 (436)
++.+|+.. .....++++++.+++-+.+.... ...++.. ++.+|+.... ...++|+.+++++.+
T Consensus 11 ~g~l~~~D--~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~---------~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 11 DGRLYWVD--IPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSG---------GIAVVDPDTGKVTVL 75 (246)
T ss_dssp TTEEEEEE--TTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETT---------CEEEEETTTTEEEEE
T ss_pred CCEEEEEE--cCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcC---------ceEEEecCCCcEEEE
Confidence 67788773 34568999999998765532211 2333333 6888888542 256679999999877
Q ss_pred CCCc-----cCCcceeEEEECCEEEEEeccCCCCCcC--CEEEEEECCCCcEEEcCC-CCCCCCCCCCCCCCEEEEE-CC
Q 013797 265 PGMR-----QRRKLCSGCYMDNKFYVIGGRNEKDKPL--TCGEAYDEYAGTWYHIPD-ILKDFPAETGKSPPLIAVV-NN 335 (436)
Q Consensus 265 ~~~p-----~~r~~~~~~~~~g~iyv~gG~~~~~~~~--~~v~~yD~~~~~W~~v~~-~~~~~~~~~~r~~~~~~~~-~g 335 (436)
...+ ..+..-.++--+|.||+-.-........ ..++.+++. ++...+.. +. ..-+++.. ++
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---------~pNGi~~s~dg 145 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---------FPNGIAFSPDG 145 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---------SEEEEEEETTS
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---------cccceEECCcc
Confidence 5543 1222223333478888864322111112 578999998 66555442 21 11234444 34
Q ss_pred -EEEEEecCCCeEEEEECCCCc--EEEcc---cCCCccCCCCCceEEEEEeCCEEEEEc
Q 013797 336 -ELYSLETSSNELRVYLKDSNS--WKNLG---LVPVRADFNRGWGIAFKSLGNELLVIG 388 (436)
Q Consensus 336 -~lyv~gg~~~~i~~yd~~~~~--W~~v~---~~p~~~~~~~~~~~~~~~~~~~l~v~G 388 (436)
.||+.....+.|++|++.... +.... .++... ..--|+++ -..|+||+..
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--g~pDG~~v-D~~G~l~va~ 201 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP--GYPDGLAV-DSDGNLWVAD 201 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS--CEEEEEEE-BTTS-EEEEE
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCC--cCCCcceE-cCCCCEEEEE
Confidence 688888778899999986432 43322 222211 11123443 4468899873
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00069 Score=62.29 Aligned_cols=44 Identities=27% Similarity=0.275 Sum_probs=39.9
Q ss_pred CCCCChHHHHHHhhccCCcccccccccccHhhhhhhccchhHHH
Q 013797 90 FVPSLSDELEVLIVARVPRAEYWKFYLLNKRFLSLLKSGELFKI 133 (436)
Q Consensus 90 ~~~~LPddl~~~ILarLP~~~l~~~~~Vck~w~~li~s~~f~~~ 133 (436)
-|-+||||+++.|++.||.+.+.++..|||||+++.++..++..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 37799999999999999999999999999999999888777644
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.48 E-value=0.8 Score=47.18 Aligned_cols=278 Identities=13% Similarity=0.119 Sum_probs=138.3
Q ss_pred CCCCCCCChHHHHHHhhccCCcccccccccccHhhhhhhccchhHHHH-hhcC-ccC---CeEEEeccC-----CCeEEE
Q 013797 87 DYSFVPSLSDELEVLIVARVPRAEYWKFYLLNKRFLSLLKSGELFKIR-REIG-FRE---PSVFMLASG-----DSSWWA 156 (436)
Q Consensus 87 ~~~~~~~LPddl~~~ILarLP~~~l~~~~~Vck~w~~li~s~~f~~~~-~~~~-~~~---~~l~~~~~~-----~~~~~~ 156 (436)
....+..||.++...||..|+.+.+++++.||+.|+.++.+...+... .... ... .+......+ ....+.
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~ 183 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYR 183 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhh
Confidence 345789999999999999999999999999999999999877665432 2211 110 000000000 000000
Q ss_pred -EecCCCCeEeCCCCCCCCCccCCCee---eEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe-C
Q 013797 157 -FDRHFQTRRKLPELPSDPCFKLGDKE---SLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC-G 231 (436)
Q Consensus 157 -~dp~~~~W~~l~~~~~~~~~~~~~~~---~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~-~ 231 (436)
.......|....-........+.... ....++++.. | .....+..||..+..-...+..-+.-.-.++... +
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~-~--s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~ 260 (537)
T KOG0274|consen 184 RRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKS-G--SDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG 260 (537)
T ss_pred hhhhccccccccccccceeecccCcchhhhheeecCeEEe-c--CCCceeEEeecccceEEEeeccCCCCCceeEEEecC
Confidence 01112334333222111111000000 1111222221 1 1224556777776654443221111111122222 3
Q ss_pred CEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEE
Q 013797 232 TFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYH 311 (436)
Q Consensus 232 ~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~ 311 (436)
+.+++.|..+ .++.+.|..++.....-. .......+......+.++|. .-+.|.++|..++.--.
T Consensus 261 ~~~lvsgS~D-------~t~rvWd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs-----~D~tVkVW~v~n~~~l~ 325 (537)
T KOG0274|consen 261 GDKLVSGSTD-------KTERVWDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGS-----RDNTVKVWDVTNGACLN 325 (537)
T ss_pred CCEEEEEecC-------CcEEeEecCCCcEEEEec---CCCceEEEEEccCceEeecc-----CCceEEEEeccCcceEE
Confidence 5566665433 346778888887654422 22222233334444555432 34568899988766544
Q ss_pred cCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCC-EEEEEcCC
Q 013797 312 IPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGN-ELLVIGAS 390 (436)
Q Consensus 312 v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~-~l~v~GG~ 390 (436)
+-.-. -.....+.+++.+.+.|.+.+.|.+||+.+.+-... +.. ....+....+++ ..++-|..
T Consensus 326 l~~~h--------~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~s--l~g-----H~~~V~sl~~~~~~~~~Sgs~ 390 (537)
T KOG0274|consen 326 LLRGH--------TGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKS--LSG-----HTGRVYSLIVDSENRLLSGSL 390 (537)
T ss_pred Eeccc--------cccEEEEEecCCEEEEEecCceEEEEEhhhceeeee--ecC-----CcceEEEEEecCcceEEeeee
Confidence 32211 011123556788888888888999999996544332 221 111133335566 55555555
Q ss_pred CCCCCCcEEEE
Q 013797 391 STSSHESMAIY 401 (436)
Q Consensus 391 ~~~~~~~~~~y 401 (436)
+ ..+.+|
T Consensus 391 D----~~IkvW 397 (537)
T KOG0274|consen 391 D----TTIKVW 397 (537)
T ss_pred c----cceEee
Confidence 5 456677
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.44 E-value=0.18 Score=46.39 Aligned_cols=194 Identities=14% Similarity=0.075 Sum_probs=104.5
Q ss_pred CeEEEeccCCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEE--eCCEEEEEceecCCCeEEEEECCCCCEEeCCCCC
Q 013797 142 PSVFMLASGDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLC--AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMR 219 (436)
Q Consensus 142 ~~l~~~~~~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p 219 (436)
..+|+.-.....++.+|+.+..-..+. .+.+ . .++. .++.+|+... ....++|+.+++++.+...+
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~~----~---G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVID-LPGP----N---GMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEE-SSSE----E---EEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEE
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEEe-cCCC----c---eEEEEccCCEEEEEEc----CceEEEecCCCcEEEEeecc
Confidence 344444445678899999887654422 1111 1 1333 3788888743 24566799999998876653
Q ss_pred C---CCccc--EEEEeCCEEEEEcCcCCCCC-CccceEEEEeCCCCCeEeCCCCccCCcceeEEEE-CC-EEEEEeccCC
Q 013797 220 R---PRCLF--ASATCGTFAFVAGGHGMDGS-GVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYM-DN-KFYVIGGRNE 291 (436)
Q Consensus 220 ~---~r~~~--~~~~~~~~iyv~GG~~~~~~-~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g-~iyv~gG~~~ 291 (436)
. +.... .++.-+|.+|+..-...... .....++++++. ++.+.+.. .... .-+.++. ++ .||+...
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~-pNGi~~s~dg~~lyv~ds--- 153 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF-PNGIAFSPDGKTLYVADS--- 153 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS-EEEEEEETTSSEEEEEET---
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc-ccceEECCcchheeeccc---
Confidence 1 22222 22223678887643222110 011568999998 66554421 1111 1122332 44 5787653
Q ss_pred CCCcCCEEEEEECCCCc--EEE---cCCCCCCCCCCCCCCCCEEEEE-CCEEEEEecCCCeEEEEECCCCcEEEcc
Q 013797 292 KDKPLTCGEAYDEYAGT--WYH---IPDILKDFPAETGKSPPLIAVV-NNELYSLETSSNELRVYLKDSNSWKNLG 361 (436)
Q Consensus 292 ~~~~~~~v~~yD~~~~~--W~~---v~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~~~~i~~yd~~~~~W~~v~ 361 (436)
....+++||+.... +.. +..++. .....-++++. +|.||+.....+.|++||++...-..+.
T Consensus 154 ---~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 154 ---FNGRIWRFDLDADGGELSNRRVFIDFPG-----GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp ---TTTEEEEEEEETTTCCEEEEEEEEE-SS-----SSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred ---ccceeEEEeccccccceeeeeeEEEcCC-----CCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEc
Confidence 35568999886433 332 222221 11112234443 6899998766789999999976666663
No 70
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=96.44 E-value=0.065 Score=44.04 Aligned_cols=81 Identities=9% Similarity=0.107 Sum_probs=57.8
Q ss_pred EEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC------CeEEEE
Q 013797 277 CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS------NELRVY 350 (436)
Q Consensus 277 ~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~------~~i~~y 350 (436)
+.+||.+|.++... ......|.+||..+++|+.++.+. ..........++.++|+|-++.... -++|+.
T Consensus 2 icinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~---~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPE---DPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeee---eeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEe
Confidence 56899999988651 124678999999999999887541 0014456677899999998885421 256776
Q ss_pred -ECCCCcEEEccc
Q 013797 351 -LKDSNSWKNLGL 362 (436)
Q Consensus 351 -d~~~~~W~~v~~ 362 (436)
|.++.+|.+...
T Consensus 77 eD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQEWSKKHI 89 (129)
T ss_pred eccccceEEEEEE
Confidence 566789998754
No 71
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.41 E-value=0.97 Score=43.49 Aligned_cols=233 Identities=11% Similarity=0.090 Sum_probs=106.7
Q ss_pred EEEeccCCCeEEEEecCC-CCeEeCCCCCCCCCccCCCeeeEE-eCCEEEEEceecCCCeEEEEECC-CCCEEeCCCCCC
Q 013797 144 VFMLASGDSSWWAFDRHF-QTRRKLPELPSDPCFKLGDKESLC-AGTHLIVSGNEIEGGVIWRYELE-TNNWFKGPSMRR 220 (436)
Q Consensus 144 l~~~~~~~~~~~~~dp~~-~~W~~l~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~v~~ydp~-t~~W~~l~~~p~ 220 (436)
+|+.......+..||..+ +++..+..++....... ..+. .+..||+.+. ....+..|+.. ++++..+...+.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~---l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~~~ 78 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQP---MVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAESPL 78 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCcc---EEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeeecC
Confidence 344434456677888753 45555444432211111 1222 2456777543 33566667665 456765544333
Q ss_pred CCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeCCCCccCCcceeEEEE-CC-EEEEEeccCCCCC
Q 013797 221 PRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSLPGMRQRRKLCSGCYM-DN-KFYVIGGRNEKDK 294 (436)
Q Consensus 221 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~-~g-~iyv~gG~~~~~~ 294 (436)
+...+.++.. +..+|+..-. ...+.+||..++. .+.+...+.....|.+++. ++ .+|+..-
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~-------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------ 145 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYN-------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------ 145 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcC-------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------
Confidence 2221222222 3456666421 2357778775431 1122212211122333333 34 5666542
Q ss_pred cCCEEEEEECCCC-cEEEcC----CCCCCCCCCCCCCCCEEEEE-C-CEEEEEecCCCeEEEEECC--CCcEEEcc---c
Q 013797 295 PLTCGEAYDEYAG-TWYHIP----DILKDFPAETGKSPPLIAVV-N-NELYSLETSSNELRVYLKD--SNSWKNLG---L 362 (436)
Q Consensus 295 ~~~~v~~yD~~~~-~W~~v~----~~~~~~~~~~~r~~~~~~~~-~-g~lyv~gg~~~~i~~yd~~--~~~W~~v~---~ 362 (436)
..+.+.+||+.+. .-.... ..+.+ ..+| .++.. + ..+|+.....+.|.+||.+ +++.+.+. .
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g---~~p~---~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 219 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEG---AGPR---HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM 219 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCC---CCCc---eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec
Confidence 2457899998763 222110 11110 0122 23332 3 3678886667889888876 44555443 3
Q ss_pred CCCc-cCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeec
Q 013797 363 VPVR-ADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCC 404 (436)
Q Consensus 363 ~p~~-~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~ 404 (436)
+|.. ...+...++.+..-+..||+..... +.+.+|.++
T Consensus 220 ~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~----~~I~v~~i~ 258 (330)
T PRK11028 220 MPADFSDTRWAADIHITPDGRHLYACDRTA----SLISVFSVS 258 (330)
T ss_pred CCCcCCCCccceeEEECCCCCEEEEecCCC----CeEEEEEEe
Confidence 3321 1111111233323344677753222 356677544
No 72
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.26 E-value=0.063 Score=50.28 Aligned_cols=122 Identities=18% Similarity=0.277 Sum_probs=72.4
Q ss_pred EEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEE-CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEc
Q 013797 234 AFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYM-DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHI 312 (436)
Q Consensus 234 iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v 312 (436)
|||.|-+...+.-....+-.||..+.+|..+..--... -.+.... ++++|+.|-....+.....+..||.++.+|+.+
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL 79 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec
Confidence 35555555443223667899999999999886542221 1233334 677888775543332456788999999999988
Q ss_pred CCCC-CCCCCCCCCCCCEEEEE--C-CEEEEEecC-C--CeEEEEECCCCcEEEccc
Q 013797 313 PDIL-KDFPAETGKSPPLIAVV--N-NELYSLETS-S--NELRVYLKDSNSWKNLGL 362 (436)
Q Consensus 313 ~~~~-~~~~~~~~r~~~~~~~~--~-g~lyv~gg~-~--~~i~~yd~~~~~W~~v~~ 362 (436)
.... ...+ .+ ..++... + ..+++.|.. . ..+..| +..+|..+..
T Consensus 80 ~~~~s~~ip--gp--v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 80 GGGSSNSIP--GP--VTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CCcccccCC--Cc--EEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 7632 1111 11 1122222 2 367777652 2 246666 5568999864
No 73
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.25 E-value=0.28 Score=47.79 Aligned_cols=179 Identities=18% Similarity=0.125 Sum_probs=101.0
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe--CCE-EEEEcCcCCCCCCccceEEEEeCCCCCeEe
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--GTF-AFVAGGHGMDGSGVLNSAERYNPETKSWDS 263 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~ 263 (436)
...+.+++|....-.+|..|-.+|. ++.++...+.--..+.+ +|. ..+++|. ...++.||+.+.+-.+
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-------rky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-------RKYLYSYDLETAKVTK 294 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-------ceEEEEeecccccccc
Confidence 4567777887666677777877776 44444322222222221 444 5555553 3468999999998888
Q ss_pred CCCCcc-C-Cc-ceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEE
Q 013797 264 LPGMRQ-R-RK-LCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN-ELYS 339 (436)
Q Consensus 264 ~~~~p~-~-r~-~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv 339 (436)
+.++-. . +. ..-.+..++.+.++.|.. ..|..+...++.|-.--.+. ..-.... ..-++ +|++
T Consensus 295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~Kie------G~v~~~~-fsSdsk~l~~ 361 (514)
T KOG2055|consen 295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFKIE------GVVSDFT-FSSDSKELLA 361 (514)
T ss_pred ccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheeeec------cEEeeEE-EecCCcEEEE
Confidence 865421 1 11 122345677788888744 34677788888874433333 1111111 12344 5666
Q ss_pred EecCCCeEEEEECCCCc----EEEcccCCCccCCCCCceEEEE-EeCCEEEEEcCCCCCCCCcEEEE
Q 013797 340 LETSSNELRVYLKDSNS----WKNLGLVPVRADFNRGWGIAFK-SLGNELLVIGASSTSSHESMAIY 401 (436)
Q Consensus 340 ~gg~~~~i~~yd~~~~~----W~~v~~~p~~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~~~~y 401 (436)
.|+ .+.||++|..++. |..-+ ..+|..++ ..++.++.+|-.. .-|.+|
T Consensus 362 ~~~-~GeV~v~nl~~~~~~~rf~D~G---------~v~gts~~~S~ng~ylA~GS~~----GiVNIY 414 (514)
T KOG2055|consen 362 SGG-TGEVYVWNLRQNSCLHRFVDDG---------SVHGTSLCISLNGSYLATGSDS----GIVNIY 414 (514)
T ss_pred EcC-CceEEEEecCCcceEEEEeecC---------ccceeeeeecCCCceEEeccCc----ceEEEe
Confidence 655 5799999999873 33322 22344333 4566655555443 345566
No 74
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.12 E-value=0.098 Score=48.09 Aligned_cols=108 Identities=22% Similarity=0.297 Sum_probs=76.0
Q ss_pred EEE-ECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCC
Q 013797 276 GCY-MDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDS 354 (436)
Q Consensus 276 ~~~-~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~ 354 (436)
..+ .+|.||.-.|..+ ...+..||+.+++-....+++ ....+-+++..+++||.+--..+...+||+++
T Consensus 50 L~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~------~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLP------PRYFGEGITILGDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-T------TT--EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred EEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECC------ccccceeEEEECCEEEEEEecCCeEEEEcccc
Confidence 444 6889999888654 357889999999877666666 34467789999999999987788999999986
Q ss_pred CcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCC
Q 013797 355 NSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSS 407 (436)
Q Consensus 355 ~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~ 407 (436)
.++++..+. ...++|++ ..+..|++--|.+. +|.+||++
T Consensus 120 --l~~~~~~~y---~~EGWGLt--~dg~~Li~SDGS~~-------L~~~dP~~ 158 (264)
T PF05096_consen 120 --LKKIGTFPY---PGEGWGLT--SDGKRLIMSDGSSR-------LYFLDPET 158 (264)
T ss_dssp --TEEEEEEE----SSS--EEE--ECSSCEEEE-SSSE-------EEEE-TTT
T ss_pred --ceEEEEEec---CCcceEEE--cCCCEEEEECCccc-------eEEECCcc
Confidence 566665543 24678877 77888999888763 55556653
No 75
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.09 E-value=1.4 Score=42.28 Aligned_cols=247 Identities=10% Similarity=0.065 Sum_probs=115.6
Q ss_pred CCeEEEeccCCCeEEEEecC-CCCeEeCCCCCCCCCccCCCeeeEE-eCCEEEEEceecCCCeEEEEECCCCC--EEeCC
Q 013797 141 EPSVFMLASGDSSWWAFDRH-FQTRRKLPELPSDPCFKLGDKESLC-AGTHLIVSGNEIEGGVIWRYELETNN--WFKGP 216 (436)
Q Consensus 141 ~~~l~~~~~~~~~~~~~dp~-~~~W~~l~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~ 216 (436)
...+|+.......+..|+.. ++++..+...+.+..... .+.. .+..+|+... ..+.+.+|+..++. ...+.
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~---i~~~~~g~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~ 120 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH---ISTDHQGRFLFSASY--NANCVSVSPLDKDGIPVAPIQ 120 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE---EEECCCCCEEEEEEc--CCCeEEEEEECCCCCCCCcee
Confidence 34455543344556666664 445554433332211111 1222 2556776642 24577788775431 11222
Q ss_pred CCCCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCC-eEeCC----CCccCCcceeEEEE-C-CEEEEEe
Q 013797 217 SMRRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKS-WDSLP----GMRQRRKLCSGCYM-D-NKFYVIG 287 (436)
Q Consensus 217 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~----~~p~~r~~~~~~~~-~-g~iyv~g 287 (436)
.++.....|.++.. +..+|+..- ..+.+.+||..++. ..... ..+....-..+++. + ..+|+..
T Consensus 121 ~~~~~~~~~~~~~~p~g~~l~v~~~-------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 121 IIEGLEGCHSANIDPDNRTLWVPCL-------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred eccCCCcccEeEeCCCCCEEEEeeC-------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe
Confidence 22222223444443 346666542 13468899987632 21110 11111111223333 3 3577765
Q ss_pred ccCCCCCcCCEEEEEECC--CCcEEEc---CCCCCCCCCCCCCCCCEEEEE-CC-EEEEEecCCCeEEEEECC--CCcEE
Q 013797 288 GRNEKDKPLTCGEAYDEY--AGTWYHI---PDILKDFPAETGKSPPLIAVV-NN-ELYSLETSSNELRVYLKD--SNSWK 358 (436)
Q Consensus 288 G~~~~~~~~~~v~~yD~~--~~~W~~v---~~~~~~~~~~~~r~~~~~~~~-~g-~lyv~gg~~~~i~~yd~~--~~~W~ 358 (436)
. ..+.+.+||.. +++.+.+ ..+|... ..++....+... +| .+|+.....+.|.+|+.+ +..++
T Consensus 194 ~------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 194 E------LNSSVDVWQLKDPHGEIECVQTLDMMPADF--SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred c------CCCEEEEEEEeCCCCCEEEEEEEecCCCcC--CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 3 24567777775 4455443 3333211 122332223222 34 577765556778888764 44566
Q ss_pred EcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCCCCccCcEEee
Q 013797 359 NLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSDAGELQWRLLE 418 (436)
Q Consensus 359 ~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W~~l~ 418 (436)
.++..+....++ ++++..-|..||+.+..+ ..+.+|..+.++. .+..+.
T Consensus 266 ~~~~~~~~~~p~---~~~~~~dg~~l~va~~~~----~~v~v~~~~~~~g----~l~~~~ 314 (330)
T PRK11028 266 FEGHQPTETQPR---GFNIDHSGKYLIAAGQKS----HHISVYEIDGETG----LLTELG 314 (330)
T ss_pred EeEEEeccccCC---ceEECCCCCEEEEEEccC----CcEEEEEEcCCCC----cEEEcc
Confidence 665544321111 234334466777765433 4788886664433 555554
No 76
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.99 E-value=2.1 Score=43.32 Aligned_cols=146 Identities=9% Similarity=-0.087 Sum_probs=80.7
Q ss_pred CCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEE
Q 013797 199 GGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCY 278 (436)
Q Consensus 199 ~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 278 (436)
...++++|+.+++-+.+...+..-...+..--+.+|++....++ ..+++++|..+++.+.+..-.. ........
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g-----~~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wS 314 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG-----QPEIYVVDIATKALTRITRHRA-IDTEPSWH 314 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC-----CeEEEEEECCCCCeEECccCCC-CccceEEC
Confidence 45899999999887777655422111111112345655543222 3479999999998887744221 11111122
Q ss_pred ECCE-EEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEEEecC--CCeEEEEECCC
Q 013797 279 MDNK-FYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN-ELYSLETS--SNELRVYLKDS 354 (436)
Q Consensus 279 ~~g~-iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~gg~--~~~i~~yd~~~ 354 (436)
-+|+ |++..... ....++.+|+.++++..+..... .. ..+ ...-+| .|++.+.. ...|+.+|+.+
T Consensus 315 pDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~~g~-----~~-~~~-~~SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 315 PDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTFEGE-----QN-LGG-SITPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred CCCCEEEEEECCC----CCceEEEEECCCCCEEEEecCCC-----CC-cCe-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3454 44443222 13578999999999888752210 00 111 122244 55555432 23688999999
Q ss_pred CcEEEcc
Q 013797 355 NSWKNLG 361 (436)
Q Consensus 355 ~~W~~v~ 361 (436)
++.+.+.
T Consensus 384 g~~~~lt 390 (448)
T PRK04792 384 GAMQVLT 390 (448)
T ss_pred CCeEEcc
Confidence 8887765
No 77
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.95 E-value=1.2 Score=43.29 Aligned_cols=228 Identities=17% Similarity=0.137 Sum_probs=115.6
Q ss_pred eEEEEecCCCCeEeCCCCCCCCCccCCCeeeEE--eCCEEEEEceec-CCCeE--EEEECCCCCEEeCCCCCCCCcccEE
Q 013797 153 SWWAFDRHFQTRRKLPELPSDPCFKLGDKESLC--AGTHLIVSGNEI-EGGVI--WRYELETNNWFKGPSMRRPRCLFAS 227 (436)
Q Consensus 153 ~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~-~~~~v--~~ydp~t~~W~~l~~~p~~r~~~~~ 227 (436)
..+.||..++++..+........... ++. .++.||+..... ....+ +..+..+++.+.+...+......+.
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~----l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSW----LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECC----EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCce----EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 45577889998877654322211111 233 578899886532 33444 4555555788877665533223233
Q ss_pred EEe---CCEEEEEcCcCCCCCCccceEEEEeCCCCC-eEeC---------CCCc---cCCcceeEEEE-C-CEEEEEecc
Q 013797 228 ATC---GTFAFVAGGHGMDGSGVLNSAERYNPETKS-WDSL---------PGMR---QRRKLCSGCYM-D-NKFYVIGGR 289 (436)
Q Consensus 228 ~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~---------~~~p---~~r~~~~~~~~-~-g~iyv~gG~ 289 (436)
..+ +..+|+..-. ...+.+|+...+- =... ++-+ ..-..|.+... + ..+|+..-
T Consensus 92 i~~~~~g~~l~vany~-------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl- 163 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYG-------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL- 163 (345)
T ss_dssp EEECTTSSEEEEEETT-------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-
T ss_pred EEEecCCCEEEEEEcc-------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-
Confidence 333 4567766321 2357777776642 1111 0111 11112333333 3 35666542
Q ss_pred CCCCCcCCEEEEEECCCCc--EEEcCCCCCCCCCCCCCCCCE-EEEE-C-CEEEEEecCCCeEEEEECC--CCcEEEccc
Q 013797 290 NEKDKPLTCGEAYDEYAGT--WYHIPDILKDFPAETGKSPPL-IAVV-N-NELYSLETSSNELRVYLKD--SNSWKNLGL 362 (436)
Q Consensus 290 ~~~~~~~~~v~~yD~~~~~--W~~v~~~~~~~~~~~~r~~~~-~~~~-~-g~lyv~gg~~~~i~~yd~~--~~~W~~v~~ 362 (436)
..+.|.+|+...+. ......... ..-.++. ++.. + ..+|++....+.|.+|+.. +..++.+..
T Consensus 164 -----G~D~v~~~~~~~~~~~l~~~~~~~~-----~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 164 -----GADRVYVYDIDDDTGKLTPVDSIKV-----PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp -----TTTEEEEEEE-TTS-TEEEEEEEEC-----STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred -----CCCEEEEEEEeCCCceEEEeecccc-----ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 24678888887665 554332210 0112222 2333 3 4799998888888888766 667777654
Q ss_pred CCCcc---CCC-CCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCC
Q 013797 363 VPVRA---DFN-RGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPS 406 (436)
Q Consensus 363 ~p~~~---~~~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~ 406 (436)
.+..+ ... ...++++..-+..||+..... +.+.+|..+++
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~----~sI~vf~~d~~ 277 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS----NSISVFDLDPA 277 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTT----TEEEEEEECTT
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccC----CEEEEEEEecC
Confidence 33321 111 122233222356788865433 57888876654
No 78
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.90 E-value=0.081 Score=43.46 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=58.5
Q ss_pred EEECCEEEEEecC----CCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCC
Q 013797 331 AVVNNELYSLETS----SNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPS 406 (436)
Q Consensus 331 ~~~~g~lyv~gg~----~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~ 406 (436)
+.+||.||-+... ...|..||.++++|+.+.. |.. .........++.++|+|.++.-........+++|.+.
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~-P~~-~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe-- 77 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKL-PED-PYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE-- 77 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEe-eee-eccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee--
Confidence 4578999888653 4679999999999999853 311 1122233556689999999876654223568888777
Q ss_pred CCCCccCcEEee
Q 013797 407 SDAGELQWRLLE 418 (436)
Q Consensus 407 ~d~~~~~W~~l~ 418 (436)
|.++.+|.+.-
T Consensus 78 -D~~k~~Wsk~~ 88 (129)
T PF08268_consen 78 -DYEKQEWSKKH 88 (129)
T ss_pred -ccccceEEEEE
Confidence 77788998775
No 79
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.81 E-value=1.6 Score=40.59 Aligned_cols=182 Identities=14% Similarity=0.038 Sum_probs=87.6
Q ss_pred EEeccCCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEe-CCEEEEEceecCCCeEEEEECCCCCEEe-CCCCCCCC
Q 013797 145 FMLASGDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCA-GTHLIVSGNEIEGGVIWRYELETNNWFK-GPSMRRPR 222 (436)
Q Consensus 145 ~~~~~~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~v~~ydp~t~~W~~-l~~~p~~r 222 (436)
++-......+..||+.+++-......... ... ..... +..+|+.++ ....+.+||..+++... ++....+
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~--~~~---l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~- 75 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQR--PRG---ITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLPSGPDP- 75 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCC--CCc---eEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEeccCCCCc-
Confidence 33333456788899887664332221111 111 12222 345677654 24578999999887644 3221111
Q ss_pred cccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE-EECCEEEEEeccCCCCCcCCEE
Q 013797 223 CLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC-YMDNKFYVIGGRNEKDKPLTCG 299 (436)
Q Consensus 223 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g~iyv~gG~~~~~~~~~~v 299 (436)
..++.. ++.+|+.++.+ ..+.+||+.+.+- +...+......+.+ .-++++++++..+ ...+
T Consensus 76 --~~~~~~~~g~~l~~~~~~~-------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~ 139 (300)
T TIGR03866 76 --ELFALHPNGKILYIANEDD-------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSET-----TNMA 139 (300)
T ss_pred --cEEEECCCCCEEEEEcCCC-------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecC-----CCeE
Confidence 122222 34566665422 2588899987542 11111111112222 2366676665432 1235
Q ss_pred EEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCE-EEEEecCCCeEEEEECCCCcE
Q 013797 300 EAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNE-LYSLETSSNELRVYLKDSNSW 357 (436)
Q Consensus 300 ~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~-lyv~gg~~~~i~~yd~~~~~W 357 (436)
..||..+.+-........ .+ ......-+++ +++.+...+.+.+||.++.+.
T Consensus 140 ~~~d~~~~~~~~~~~~~~-----~~--~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 140 HFIDTKTYEIVDNVLVDQ-----RP--RFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EEEeCCCCeEEEEEEcCC-----Cc--cEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 667877654322111110 11 1111223555 444443467899999987643
No 80
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.58 E-value=2.5 Score=41.09 Aligned_cols=248 Identities=16% Similarity=0.209 Sum_probs=121.3
Q ss_pred cCCeEEEecc---CCCeEEEEe--cCCCCeEeCCCCCCCCCccCCCeeeEE--eCCEEEEEceecCCCeEEEEECCCC-C
Q 013797 140 REPSVFMLAS---GDSSWWAFD--RHFQTRRKLPELPSDPCFKLGDKESLC--AGTHLIVSGNEIEGGVIWRYELETN-N 211 (436)
Q Consensus 140 ~~~~l~~~~~---~~~~~~~~d--p~~~~W~~l~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~v~~ydp~t~-~ 211 (436)
....+|+... ....+..|. +.+.+...+...+....... .++. .+..||+.. .....+.+|+...+ +
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~---~i~~~~~g~~l~van--y~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC---HIAVDPDGRFLYVAN--YGGGSVSVFPLDDDGS 121 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE---EEEECTTSSEEEEEE--TTTTEEEEEEECTTSE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE---EEEEecCCCEEEEEE--ccCCeEEEEEccCCcc
Confidence 3445555544 234555554 44456665544432111111 1222 356677652 23456777777663 2
Q ss_pred EEeCC---------CC---CCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeCCC--CccCCcc
Q 013797 212 WFKGP---------SM---RRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSLPG--MRQRRKL 273 (436)
Q Consensus 212 W~~l~---------~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~--~p~~r~~ 273 (436)
-.... +- ...-..|.+... +..+|+..- -...+.+|+...+. ...... ++..-.-
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-------CCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 21110 11 111122344333 346777631 13468888877665 544221 2222111
Q ss_pred eeEEEE-C-CEEEEEeccCCCCCcCCEEEEEECC--CCcEEEcC---CCCCCCCCCCCC-CCCEEEEE--CCEEEEEecC
Q 013797 274 CSGCYM-D-NKFYVIGGRNEKDKPLTCGEAYDEY--AGTWYHIP---DILKDFPAETGK-SPPLIAVV--NNELYSLETS 343 (436)
Q Consensus 274 ~~~~~~-~-g~iyv~gG~~~~~~~~~~v~~yD~~--~~~W~~v~---~~~~~~~~~~~r-~~~~~~~~--~g~lyv~gg~ 343 (436)
..+++. + ..+|++.. ..+.+.+|+.. ++.++.+. .++.+. ... ....++.. +..||+....
T Consensus 195 Rh~~f~pdg~~~Yv~~e------~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNE------LSNTVSVFDYDPSDGSLTEIQTISTLPEGF---TGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp EEEEE-TTSSEEEEEET------TTTEEEEEEEETTTTEEEEEEEEESCETTS---CSSSSEEEEEE-TTSSEEEEEECT
T ss_pred cEEEEcCCcCEEEEecC------CCCcEEEEeecccCCceeEEEEeeeccccc---cccCCceeEEEecCCCEEEEEecc
Confidence 223343 3 46899875 34556666555 66766654 343211 111 22333333 3468888766
Q ss_pred CCeEEEEEC--CCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCCCCccCcEEee
Q 013797 344 SNELRVYLK--DSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSDAGELQWRLLE 418 (436)
Q Consensus 344 ~~~i~~yd~--~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W~~l~ 418 (436)
.+.|.+|+. ++++-+.+...+.... .-.++++..-|..|||.+..+ +.+.+|..++++ ..++.+.
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s----~~v~vf~~d~~t----G~l~~~~ 332 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDS----NTVSVFDIDPDT----GKLTPVG 332 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTT----TEEEEEEEETTT----TEEEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCC----CeEEEEEEeCCC----CcEEEec
Confidence 788999987 4567777665543111 112344334566677665444 578899766544 3777766
No 81
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.38 E-value=4 Score=42.21 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=70.1
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCCCCC--------CcccEEEEeCCEEEEEcCcCCCCCCccceEE
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSMRRP--------RCLFASATCGTFAFVAGGHGMDGSGVLNSAE 252 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 252 (436)
-+..++.||+... ...++.+|..|++ |+.-...+.. ......++.+++||+... ...+.
T Consensus 65 Pvv~~g~vyv~s~---~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------dg~l~ 133 (527)
T TIGR03075 65 PLVVDGVMYVTTS---YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------DARLV 133 (527)
T ss_pred CEEECCEEEEECC---CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------CCEEE
Confidence 3567899998643 2468899998876 8765433211 112234556888887532 12488
Q ss_pred EEeCCCCC--eEeC-CCCccC-CcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC--cEEE
Q 013797 253 RYNPETKS--WDSL-PGMRQR-RKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG--TWYH 311 (436)
Q Consensus 253 ~yd~~t~~--W~~~-~~~p~~-r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~--~W~~ 311 (436)
.+|.+|++ |+.- ..+... ....+.++.++++|+-......+ ....+.+||.+++ .|+.
T Consensus 134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~-~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFG-VRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccC-CCcEEEEEECCCCceeEec
Confidence 99998887 8643 222211 12234467789887753221111 3457899999988 4764
No 82
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.32 E-value=3.4 Score=41.06 Aligned_cols=144 Identities=12% Similarity=-0.084 Sum_probs=78.3
Q ss_pred CeEEEEECCCCCEEeCCCCCCCCcccEEEEeCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEE
Q 013797 200 GVIWRYELETNNWFKGPSMRRPRCLFASATCGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCY 278 (436)
Q Consensus 200 ~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 278 (436)
..++++|..+++-..+.......... ...-++ .|++.....+ ...++.+|..++..+.+......... ....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~-----~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~s 286 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDG-----NPDIYVMDLDGKQLTRLTNGPGIDTE-PSWS 286 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCC-----CccEEEEECCCCCEEECCCCCCCCCC-EEEC
Confidence 57999999998877665543222211 112243 5655543222 24689999998887776433211111 1112
Q ss_pred ECCE-EEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC---CeEEEEECCC
Q 013797 279 MDNK-FYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS---NELRVYLKDS 354 (436)
Q Consensus 279 ~~g~-iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~---~~i~~yd~~~ 354 (436)
-+|+ |++..... ....++.+|..++.+..+..... . .......-+|+.+++.... ..|+.+|+.+
T Consensus 287 ~dg~~l~~~s~~~----g~~~iy~~d~~~~~~~~l~~~~~------~-~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 287 PDGKSIAFTSDRG----GSPQIYMMDADGGEVRRLTFRGG------Y-NASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCCC------C-ccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 2454 54443222 12478999999888876653221 0 0111122345544443322 3799999998
Q ss_pred CcEEEcc
Q 013797 355 NSWKNLG 361 (436)
Q Consensus 355 ~~W~~v~ 361 (436)
+.++.+.
T Consensus 356 ~~~~~l~ 362 (417)
T TIGR02800 356 GGERVLT 362 (417)
T ss_pred CCeEEcc
Confidence 7777664
No 83
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.24 E-value=3.2 Score=40.32 Aligned_cols=77 Identities=14% Similarity=0.054 Sum_probs=45.2
Q ss_pred cCccCCeEEEecc---------CCCeEEEEecCCCCeEeCCCCCCCCCcc---CCCeeeEEe-CCEEEEEceecCCCeEE
Q 013797 137 IGFREPSVFMLAS---------GDSSWWAFDRHFQTRRKLPELPSDPCFK---LGDKESLCA-GTHLIVSGNEIEGGVIW 203 (436)
Q Consensus 137 ~~~~~~~l~~~~~---------~~~~~~~~dp~~~~W~~l~~~~~~~~~~---~~~~~~~~~-~~~iyv~GG~~~~~~v~ 203 (436)
++.....+|+... ....+..||+.+.+-..--++|..+.+. .......+. |..+||.. ....+.+-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-CCCCCEEE
Confidence 4445556677665 5678899999988765433333322211 111112333 45677763 23357899
Q ss_pred EEECCCCCEEe
Q 013797 204 RYELETNNWFK 214 (436)
Q Consensus 204 ~ydp~t~~W~~ 214 (436)
+.|..+++-..
T Consensus 132 VvD~~~~kvv~ 142 (352)
T TIGR02658 132 VVDLEGKAFVR 142 (352)
T ss_pred EEECCCCcEEE
Confidence 99999998654
No 84
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.16 E-value=4 Score=41.02 Aligned_cols=157 Identities=13% Similarity=-0.016 Sum_probs=83.3
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCC
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLP 265 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~ 265 (436)
+..|+...-......++++|..+++-+.+...+..-. .....- +.+|++....++ ..+++++|+.++.-+.+.
T Consensus 215 g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g-----~~~Iy~~d~~~g~~~~lt 288 (433)
T PRK04922 215 GKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG-----NPEIYVMDLGSRQLTRLT 288 (433)
T ss_pred CCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC-----CceEEEEECCCCCeEECc
Confidence 3445544322233579999999998877765542211 111122 345655433222 246999999988876664
Q ss_pred CCccCCcceeEEEECCE-EEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEEEecC
Q 013797 266 GMRQRRKLCSGCYMDNK-FYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN-ELYSLETS 343 (436)
Q Consensus 266 ~~p~~r~~~~~~~~~g~-iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~gg~ 343 (436)
.-... .......-+|+ |++.....+ ...++.+|..++..+.+..... ....+. ..-+| .|++....
T Consensus 289 ~~~~~-~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g~------~~~~~~-~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 289 NHFGI-DTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQGN------YNARAS-VSPDGKKIAMVHGS 356 (433)
T ss_pred cCCCC-ccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCCC------CccCEE-ECCCCCEEEEEECC
Confidence 32111 11112223554 444332221 2468899998888877653210 001111 22234 55554332
Q ss_pred --CCeEEEEECCCCcEEEcc
Q 013797 344 --SNELRVYLKDSNSWKNLG 361 (436)
Q Consensus 344 --~~~i~~yd~~~~~W~~v~ 361 (436)
...|+++|+.+++.+.+.
T Consensus 357 ~~~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 357 GGQYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred CCceeEEEEECCCCCeEECC
Confidence 236999999998888775
No 85
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.15 E-value=0.34 Score=45.43 Aligned_cols=108 Identities=18% Similarity=0.268 Sum_probs=66.8
Q ss_pred CeEEEEECCCCCEEeCCCCCCCCcccEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCC-----ccCCcc
Q 013797 200 GVIWRYELETNNWFKGPSMRRPRCLFASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGM-----RQRRKL 273 (436)
Q Consensus 200 ~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~r~~ 273 (436)
..+-.||+.+.+|..+..-.... -.++... ++++|+.|-....+. ....+..||..+++|..++.- |.+...
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~-~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGT-NSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCC-CceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 57889999999999987542211 1223333 678888886654331 345688999999999888652 333211
Q ss_pred eeEEEEC-CEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCC
Q 013797 274 CSGCYMD-NKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPD 314 (436)
Q Consensus 274 ~~~~~~~-g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~ 314 (436)
......+ ..+++.|.. .. ....+..|| ..+|+.+..
T Consensus 94 ~~~~~~d~~~~~~aG~~-~~--g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRS-AN--GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEecee-cC--CCceEEEEc--CCceEeccc
Confidence 1111113 356666654 22 345677886 679999876
No 86
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.14 E-value=2.6 Score=38.87 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=101.5
Q ss_pred eEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEE-EEeC
Q 013797 153 SWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFAS-ATCG 231 (436)
Q Consensus 153 ~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~-~~~~ 231 (436)
.+-++|+++..-++.+ +|..+...-....+.--.|.+++.|... -.-+.||.++.-+..+.. ....-+.+ +.-+
T Consensus 125 aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G---~yGrLdPa~~~i~vfpaP-qG~gpyGi~atpd 199 (353)
T COG4257 125 AIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIG---AYGRLDPARNVISVFPAP-QGGGPYGICATPD 199 (353)
T ss_pred eeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeeccc---cceecCcccCceeeeccC-CCCCCcceEECCC
Confidence 5556777776655543 3322221111111223356777776321 122678887765555432 22222333 3347
Q ss_pred CEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccC-CcceeE--EEECCEEEEEeccCCCCCcCCEEEEEECCCCc
Q 013797 232 TFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQR-RKLCSG--CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT 308 (436)
Q Consensus 232 ~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~--~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~ 308 (436)
+.+|+..=. -+.+-..|+.+..=+.++. |.+ .....- +--.+++++..- ....++.||+....
T Consensus 200 Gsvwyasla-------gnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wittw------g~g~l~rfdPs~~s 265 (353)
T COG4257 200 GSVWYASLA-------GNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITTW------GTGSLHRFDPSVTS 265 (353)
T ss_pred CcEEEEecc-------ccceEEcccccCCcceecC-CCcccccccccccCccCcEEEecc------CCceeeEeCccccc
Confidence 888877321 2346677888775444533 222 111111 122456666521 23468999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEcc
Q 013797 309 WYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNSWKNLG 361 (436)
Q Consensus 309 W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~W~~v~ 361 (436)
|.+-+-... .+|....-|--.|++++-....+.|.+||+++.+.+.+.
T Consensus 266 W~eypLPgs-----~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 266 WIEYPLPGS-----KARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred ceeeeCCCC-----CCCcceeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 988652211 222222223345788887777899999999999999874
No 87
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.06 E-value=4.2 Score=40.72 Aligned_cols=159 Identities=8% Similarity=-0.059 Sum_probs=84.7
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeC-CEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCC
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCG-TFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLP 265 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~ 265 (436)
+..|+...-......++++|+.+++-+.+...+..-.. ....-+ .+|++....++ ..+++++|..++..+.+.
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~-~~~SpDG~~la~~~~~~g-----~~~Iy~~d~~~~~~~~lt 283 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKDG-----NPEIYVMDLASRQLSRVT 283 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCC-eEECCCCCEEEEEEccCC-----CceEEEEECCCCCeEEcc
Confidence 44554433222345899999999988887654421111 111123 45554432221 247999999999887764
Q ss_pred CCccCCcceeEEEECC-EEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-
Q 013797 266 GMRQRRKLCSGCYMDN-KFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS- 343 (436)
Q Consensus 266 ~~p~~r~~~~~~~~~g-~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~- 343 (436)
..+.. .......-+| +|++..... ....++.+|+.++.+..+..... ....+.....++.|++....
T Consensus 284 ~~~~~-~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~~------~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 284 NHPAI-DTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVGN------YNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred cCCCC-cCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCCC------CccceEECCCCCEEEEEEccC
Confidence 32211 1111122244 455543222 13468999999888877653210 00111111123455555422
Q ss_pred -CCeEEEEECCCCcEEEccc
Q 013797 344 -SNELRVYLKDSNSWKNLGL 362 (436)
Q Consensus 344 -~~~i~~yd~~~~~W~~v~~ 362 (436)
...|+.+|+.++..+.+..
T Consensus 353 ~~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 353 GNFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred CceEEEEEECCCCCEEEccC
Confidence 2368999999988888754
No 88
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.00 E-value=0.68 Score=42.61 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=67.2
Q ss_pred EEEE-eccCCCCCcCCEEEEEECCCC---c-----EEE---cCCCCCCCCCCCCCCCCEEEEE--CC--EEEEEecC---
Q 013797 283 FYVI-GGRNEKDKPLTCGEAYDEYAG---T-----WYH---IPDILKDFPAETGKSPPLIAVV--NN--ELYSLETS--- 343 (436)
Q Consensus 283 iyv~-gG~~~~~~~~~~v~~yD~~~~---~-----W~~---v~~~~~~~~~~~~r~~~~~~~~--~g--~lyv~gg~--- 343 (436)
-|++ ||..........+++...... + ..+ +..+| .+|++|.+-++ .| ..+++||.
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP------~aRYGHt~~vV~SrGKta~VlFGGRSY~ 113 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVP------EARYGHTINVVHSRGKTACVLFGGRSYM 113 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCC------cccccceEEEEEECCcEEEEEECCcccC
Confidence 4555 776655545566665544332 1 111 22343 78999998766 33 35666763
Q ss_pred ----------------CCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCC-CCCCcEEEEeecC
Q 013797 344 ----------------SNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASST-SSHESMAIYTCCP 405 (436)
Q Consensus 344 ----------------~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~-~~~~~~~~y~~~p 405 (436)
...|+..|++-+..+.- .+|...... ++.+++ +-++.+|++||..- .+...-.+|.+..
T Consensus 114 P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah-~lpEl~dG~-SFHvsl-ar~D~VYilGGHsl~sd~Rpp~l~rlkV 189 (337)
T PF03089_consen 114 PPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAH-TLPELQDGQ-SFHVSL-ARNDCVYILGGHSLESDSRPPRLYRLKV 189 (337)
T ss_pred CccccchhhcceeccCCCeEEEEeccccccccc-cchhhcCCe-EEEEEE-ecCceEEEEccEEccCCCCCCcEEEEEE
Confidence 23477778877766654 456554433 343443 78899999999765 4444555665443
No 89
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.99 E-value=0.89 Score=44.46 Aligned_cols=186 Identities=12% Similarity=0.104 Sum_probs=99.4
Q ss_pred ccCCeEEEecc-CCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCE-EEEEceecCCCeEEEEECCCCCEEeCC
Q 013797 139 FREPSVFMLAS-GDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTH-LIVSGNEIEGGVIWRYELETNNWFKGP 216 (436)
Q Consensus 139 ~~~~~l~~~~~-~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~v~~ydp~t~~W~~l~ 216 (436)
+..+.+++... +.-++|..|-..+. .+.++....... ..+...-+|. ..+++|. ..-++.||..+.+-.++.
T Consensus 223 p~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi--~~a~f~p~G~~~i~~s~r--rky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 223 PTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPI--QKAEFAPNGHSVIFTSGR--RKYLYSYDLETAKVTKLK 296 (514)
T ss_pred CCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCcc--ceeeecCCCceEEEeccc--ceEEEEeecccccccccc
Confidence 34455555443 33466667766665 332322211111 1123333554 5566553 346899999999999987
Q ss_pred CCCC--CCccc-EEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCC
Q 013797 217 SMRR--PRCLF-ASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKD 293 (436)
Q Consensus 217 ~~p~--~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~ 293 (436)
++-. .+... --++.++.+.++-|..+ .+.+....|+.|..--.++-..........+..|++.||.
T Consensus 297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G-------~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~---- 365 (514)
T KOG2055|consen 297 PPYGVEEKSMERFEVSHDSNFIAIAGNNG-------HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT---- 365 (514)
T ss_pred CCCCcccchhheeEecCCCCeEEEcccCc-------eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC----
Confidence 6531 12222 22334555666666543 3677777787775332222222122112223456777763
Q ss_pred CcCCEEEEEECCCCc----EEEcCCCCCCCCCCCCCCCCEEE-EECCEEEEEecCCCeEEEEECCC
Q 013797 294 KPLTCGEAYDEYAGT----WYHIPDILKDFPAETGKSPPLIA-VVNNELYSLETSSNELRVYLKDS 354 (436)
Q Consensus 294 ~~~~~v~~yD~~~~~----W~~v~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~~~~i~~yd~~~ 354 (436)
..|+++|+.++. |..-. .-.+..+| ..++..+..|...+-|=+||.++
T Consensus 366 ---GeV~v~nl~~~~~~~rf~D~G----------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 366 ---GEVYVWNLRQNSCLHRFVDDG----------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ---ceEEEEecCCcceEEEEeecC----------ccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 368999999883 33211 11233333 45777777776677788888654
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.74 E-value=3.5 Score=38.24 Aligned_cols=227 Identities=15% Similarity=0.077 Sum_probs=100.7
Q ss_pred eEEEeccCCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEE-eCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCC
Q 013797 143 SVFMLASGDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLC-AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRP 221 (436)
Q Consensus 143 ~l~~~~~~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~ 221 (436)
.+++.......+..||..+.+.....+.... ... .... .++.+|+.++ ....+.+||+.+.+-. ..++..
T Consensus 44 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~---~~~~~~g~~l~~~~~--~~~~l~~~d~~~~~~~--~~~~~~ 114 (300)
T TIGR03866 44 LLYVCASDSDTIQVIDLATGEVIGTLPSGPD--PEL---FALHPNGKILYIANE--DDNLVTVIDIETRKVL--AEIPVG 114 (300)
T ss_pred EEEEEECCCCeEEEEECCCCcEEEeccCCCC--ccE---EEECCCCCEEEEEcC--CCCeEEEEECCCCeEE--eEeeCC
Confidence 3444444456788899887765432111111 111 1122 2445666653 2347999999876522 111111
Q ss_pred CcccEEEE-eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCcc-CCcceeEEEECCEEEEEeccCCCCCcCCEE
Q 013797 222 RCLFASAT-CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQ-RRKLCSGCYMDNKFYVIGGRNEKDKPLTCG 299 (436)
Q Consensus 222 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v 299 (436)
.....++. -++.+++++.... ..+..||..+.+-... ++. .+..+.+..-+++.+++++. ....+
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v 181 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETT------NMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKELWVSSE-----IGGTV 181 (300)
T ss_pred CCcceEEECCCCCEEEEEecCC------CeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCEEEEEcC-----CCCEE
Confidence 11122333 2566666554321 2355678776543211 111 11112222335554444432 12458
Q ss_pred EEEECCCCcEE-EcCCCCCCCCCCCCCCCCEEEE-ECC-EEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEE
Q 013797 300 EAYDEYAGTWY-HIPDILKDFPAETGKSPPLIAV-VNN-ELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIA 376 (436)
Q Consensus 300 ~~yD~~~~~W~-~v~~~~~~~~~~~~r~~~~~~~-~~g-~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~ 376 (436)
..||+.+.+.. .+........ +.......++. -++ .+|+..+..+.+.+||.++ ++.+...... ....+++
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~---~~~~~~~ 255 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT--YEVLDYLLVG---QRVWQLA 255 (300)
T ss_pred EEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCC--CcEEEEEEeC---CCcceEE
Confidence 88999876532 1211000000 01111112222 234 4566555567899999875 4443322211 1122344
Q ss_pred EEEeCCEEEEEcCCCCCCCCcEEEE
Q 013797 377 FKSLGNELLVIGASSTSSHESMAIY 401 (436)
Q Consensus 377 ~~~~~~~l~v~GG~~~~~~~~~~~y 401 (436)
+..-+..||+.++.+ ..+.+|
T Consensus 256 ~~~~g~~l~~~~~~~----~~i~v~ 276 (300)
T TIGR03866 256 FTPDEKYLLTTNGVS----NDVSVI 276 (300)
T ss_pred ECCCCCEEEEEcCCC----CeEEEE
Confidence 323444555544443 356666
No 91
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.61 E-value=0.011 Score=54.77 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=39.0
Q ss_pred CCCChHHHHHHhhccCCc-----ccccccccccHhhhhhhccchhHHHH
Q 013797 91 VPSLSDELEVLIVARVPR-----AEYWKFYLLNKRFLSLLKSGELFKIR 134 (436)
Q Consensus 91 ~~~LPddl~~~ILarLP~-----~~l~~~~~Vck~w~~li~s~~f~~~~ 134 (436)
+..||||++.+||.++-. .++-++.+|||.|+-.+.+++|+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 568999999999987754 78889999999999999999998774
No 92
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.39 E-value=7.2 Score=40.33 Aligned_cols=208 Identities=15% Similarity=0.138 Sum_probs=109.1
Q ss_pred CeEEEeccCCCeEEEEecCCC--CeEeCCCCCCCCC----ccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCC--EE
Q 013797 142 PSVFMLASGDSSWWAFDRHFQ--TRRKLPELPSDPC----FKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNN--WF 213 (436)
Q Consensus 142 ~~l~~~~~~~~~~~~~dp~~~--~W~~l~~~~~~~~----~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~ 213 (436)
..+|+.. ....++++|..++ .|+.-...+.... ........+..++.||+.. ....++.+|..|++ |+
T Consensus 70 g~vyv~s-~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t---~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 70 GVMYVTT-SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT---LDARLVALDAKTGKVVWS 145 (527)
T ss_pred CEEEEEC-CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc---CCCEEEEEECCCCCEEee
Confidence 3344432 3456889998875 4765433221110 0001112456678888753 23579999999987 76
Q ss_pred eCC-CCCCC-CcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeC--CCCcc------------------
Q 013797 214 KGP-SMRRP-RCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSL--PGMRQ------------------ 269 (436)
Q Consensus 214 ~l~-~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~--~~~p~------------------ 269 (436)
.-. .+... ....+-++.+++||+........ ....+..||.+|++ |+.- +.-+.
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~--~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFG--VRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccC--CCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 532 22111 11223355688887754322111 23468899999886 7633 22110
Q ss_pred -----CCcce---eEEEE---CCEEEEEecc----CC-----CCCcCCEEEEEECCCC--cEEEcCCCCCCCCCCCCCCC
Q 013797 270 -----RRKLC---SGCYM---DNKFYVIGGR----NE-----KDKPLTCGEAYDEYAG--TWYHIPDILKDFPAETGKSP 327 (436)
Q Consensus 270 -----~r~~~---~~~~~---~g~iyv~gG~----~~-----~~~~~~~v~~yD~~~~--~W~~v~~~~~~~~~~~~r~~ 327 (436)
.+.+. ....+ .+.||+--|. .. ...+.+++.++|++|+ +|+.-. .+.+.--...-..
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~~~ 302 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT-TPHDEWDYDGVNE 302 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC-CCCCCccccCCCC
Confidence 01000 01133 3567776554 11 1124678999999998 587533 2222111111123
Q ss_pred CEEEE--ECCE---EEEEecCCCeEEEEECCCCc
Q 013797 328 PLIAV--VNNE---LYSLETSSNELRVYLKDSNS 356 (436)
Q Consensus 328 ~~~~~--~~g~---lyv~gg~~~~i~~yd~~~~~ 356 (436)
+.++- .+|+ +++.+.-.+.++++|..+.+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 33443 3554 67777667788888888754
No 93
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=2 Score=37.89 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=107.9
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCC-cccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCe
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPR-CLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW 261 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 261 (436)
....+|+|+..-|....+.+.++|..+++=..-.+++.++ .+-..+..++.+|..-=.+ .-.+.||+.+ .
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e-------gvaf~~d~~t--~ 121 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE-------GVAFKYDADT--L 121 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc-------ceeEEEChHH--h
Confidence 5667889998888888899999999988733222333233 3446677889999884322 2356787764 4
Q ss_pred EeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcE---EEcC--CCCCCCCCCCCCCCCEEEEECCE
Q 013797 262 DSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTW---YHIP--DILKDFPAETGKSPPLIAVVNNE 336 (436)
Q Consensus 262 ~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W---~~v~--~~~~~~~~~~~r~~~~~~~~~g~ 336 (436)
+.+...+..-.+.+.+.-+..+..-.|. ..+..-||++-.= ..+. ..| . +.---+-.++|.
T Consensus 122 ~~lg~~~y~GeGWgLt~d~~~LimsdGs-------atL~frdP~tfa~~~~v~VT~~g~p------v-~~LNELE~VdG~ 187 (262)
T COG3823 122 EELGRFSYEGEGWGLTSDDKNLIMSDGS-------ATLQFRDPKTFAELDTVQVTDDGVP------V-SKLNELEWVDGE 187 (262)
T ss_pred hhhcccccCCcceeeecCCcceEeeCCc-------eEEEecCHHHhhhcceEEEEECCee------c-ccccceeeeccE
Confidence 4555555555556666666666555542 2334445543210 0011 111 0 011112345677
Q ss_pred EEEEecCCCeEEEEECCCC---cEEEcccCCCccCCCCC-----ceEEEEEeCCEEEEEcCC
Q 013797 337 LYSLETSSNELRVYLKDSN---SWKNLGLVPVRADFNRG-----WGIAFKSLGNELLVIGAS 390 (436)
Q Consensus 337 lyv~gg~~~~i~~yd~~~~---~W~~v~~~p~~~~~~~~-----~~~~~~~~~~~l~v~GG~ 390 (436)
+|.-=-....|.+.||+++ .|-.+..++........ .|.+....++++|+.|-.
T Consensus 188 lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 188 LYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred EEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 6665445678999999986 59888877654433332 244444556788887754
No 94
>smart00284 OLF Olfactomedin-like domains.
Probab=94.24 E-value=4.4 Score=37.28 Aligned_cols=153 Identities=8% Similarity=0.012 Sum_probs=85.4
Q ss_pred CCEEEEEceec-CCCeEEEEEC----CCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCe
Q 013797 187 GTHLIVSGNEI-EGGVIWRYEL----ETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW 261 (436)
Q Consensus 187 ~~~iyv~GG~~-~~~~v~~ydp----~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 261 (436)
++.+|++.+.. ....++.|.- ..+++.+.-.+|.+..+...++++|.+|.--. ....+.+||+.+++=
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-------~s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-------NSHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-------CCccEEEEECCCCcE
Confidence 46788876542 3355666633 33444333346777777888999999998633 235699999999875
Q ss_pred EeCCCCccCC------------cceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC----cEEEcCCCCCCCCCCCCC
Q 013797 262 DSLPGMRQRR------------KLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG----TWYHIPDILKDFPAETGK 325 (436)
Q Consensus 262 ~~~~~~p~~r------------~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~----~W~~v~~~~~~~~~~~~r 325 (436)
.....+|.+. .....++-.+-|+|+=...... ..-.+-..|+.+- +|.. ..+ .+
T Consensus 107 ~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~-g~ivvSkLnp~tL~ve~tW~T--~~~-------k~ 176 (255)
T smart00284 107 QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA-GKIVISKLNPATLTIENTWIT--TYN-------KR 176 (255)
T ss_pred EEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC-CCEEEEeeCcccceEEEEEEc--CCC-------cc
Confidence 4333333221 1123344444466663322111 0112235676554 5765 222 12
Q ss_pred CCCEEEEECCEEEEEecC--C--CeEEEEECCCCc
Q 013797 326 SPPLIAVVNNELYSLETS--S--NELRVYLKDSNS 356 (436)
Q Consensus 326 ~~~~~~~~~g~lyv~gg~--~--~~i~~yd~~~~~ 356 (436)
....+.++=|.||++... . .-.++||..+++
T Consensus 177 sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 177 SASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGK 211 (255)
T ss_pred cccccEEEeeEEEEEccCCCCCcEEEEEEECCCCc
Confidence 222345566899999631 1 236889998865
No 95
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.23 E-value=3.7 Score=36.28 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=76.2
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCC-C-CCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeC
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSM-R-RPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNP 256 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~-p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~ 256 (436)
++...+.+|+|-|. .+|+++..... -+.+... | .+..--++... ++++|++-|. ..++||.
T Consensus 12 ~~~~~g~~y~FkG~----~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~---------~yw~~~~ 78 (194)
T cd00094 12 VTTLRGELYFFKGR----YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGD---------KYWVYTG 78 (194)
T ss_pred EEEeCCEEEEEeCC----EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCC---------EEEEEcC
Confidence 44556899999653 68888875221 1122111 1 11112233333 3889999653 3677776
Q ss_pred CCCCeE---eCCCCccCC--cceeEE-EE--CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCC--CCCCCCCCCCCC
Q 013797 257 ETKSWD---SLPGMRQRR--KLCSGC-YM--DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPD--ILKDFPAETGKS 326 (436)
Q Consensus 257 ~t~~W~---~~~~~p~~r--~~~~~~-~~--~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~--~~~~~~~~~~r~ 326 (436)
.+.... .+.....+. ....++ .. ++++|++.| +..+.||..+++-..--+ +...... .+..
T Consensus 79 ~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~~~w~g-~p~~ 149 (194)
T cd00094 79 KNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIETDFPG-VPDK 149 (194)
T ss_pred cccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcchhhcCCC-cCCC
Confidence 542221 111111111 112233 33 689999976 346888876665421101 0000000 1111
Q ss_pred CCEEEEE-CCEEEEEecCCCeEEEEECCCCc
Q 013797 327 PPLIAVV-NNELYSLETSSNELRVYLKDSNS 356 (436)
Q Consensus 327 ~~~~~~~-~g~lyv~gg~~~~i~~yd~~~~~ 356 (436)
..++... ++++|++-| +..++||..+++
T Consensus 150 idaa~~~~~~~~yfF~g--~~y~~~d~~~~~ 178 (194)
T cd00094 150 VDAAFRWLDGYYYFFKG--DQYWRFDPRSKE 178 (194)
T ss_pred cceeEEeCCCcEEEEEC--CEEEEEeCccce
Confidence 2223333 489999976 789999998765
No 96
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.14 E-value=7.1 Score=39.26 Aligned_cols=189 Identities=10% Similarity=-0.077 Sum_probs=94.0
Q ss_pred CeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCC-EEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe
Q 013797 152 SSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGT-HLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC 230 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~ 230 (436)
..++..|.....=..+.....+-.. ...+-+| .|+..........++++|+.+++.+.+...+..-......--
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~-----p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLT-----PRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEe-----eEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCC
Confidence 4777888755433333221111000 0122344 444333222346899999999998887655432222121112
Q ss_pred CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEE
Q 013797 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWY 310 (436)
Q Consensus 231 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~ 310 (436)
+.+|++....++ ..+++++|..++.-+.+...+.. .......-+|+-.++.... . ....++.+|..++..+
T Consensus 257 G~~la~~~~~~g-----~~~Iy~~d~~~~~~~~Lt~~~~~-~~~~~~spDG~~i~f~s~~-~--g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 257 GRKVVMSLSQGG-----NTDIYTMDLRSGTTTRLTDSPAI-DTSPSYSPDGSQIVFESDR-S--GSPQLYVMNADGSNPR 327 (435)
T ss_pred CCEEEEEEecCC-----CceEEEEECCCCceEEccCCCCc-cCceeEcCCCCEEEEEECC-C--CCCeEEEEECCCCCeE
Confidence 345554433222 34689999998887766442211 1111222345433333211 1 1346899998887777
Q ss_pred EcCCCCCCCCCCCCCCCCEEEEECC-EEEEEecC--CCeEEEEECCCCcEEEcc
Q 013797 311 HIPDILKDFPAETGKSPPLIAVVNN-ELYSLETS--SNELRVYLKDSNSWKNLG 361 (436)
Q Consensus 311 ~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~gg~--~~~i~~yd~~~~~W~~v~ 361 (436)
.+..... ....+ ...-+| .|++.... ...++.+|+.++..+.+.
T Consensus 328 ~lt~~~~------~~~~~-~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 328 RISFGGG------RYSTP-VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT 374 (435)
T ss_pred EeecCCC------cccCe-EECCCCCEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 6653221 00111 122244 45444321 247899998877666654
No 97
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.95 E-value=3.2 Score=39.85 Aligned_cols=136 Identities=11% Similarity=0.105 Sum_probs=77.3
Q ss_pred ceEEEEeCCCC-----CeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCc-EEEcCCCCCCCCCC
Q 013797 249 NSAERYNPETK-----SWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT-WYHIPDILKDFPAE 322 (436)
Q Consensus 249 ~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~-W~~v~~~~~~~~~~ 322 (436)
-.+.+|+.... +.+.+......-.-.+.+.++|+|.+.-| +.+.+|++..+. +.....+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~------ 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYD------ 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-------
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheec------
Confidence 46888988875 45555443433334556677998655543 568888888887 88777654
Q ss_pred CCCCCCEEEEECCEEEEEecCCC-eEEEEECCCCcEEEcccCCCccCCCCCceEEEEEe-CCEEEEEcCCCCCCCCcEEE
Q 013797 323 TGKSPPLIAVVNNELYSLETSSN-ELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSL-GNELLVIGASSTSSHESMAI 400 (436)
Q Consensus 323 ~~r~~~~~~~~~g~lyv~gg~~~-~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~ 400 (436)
.+-....+.+.++.|++.....+ .+..|+.+..+-..++.-..+ + +..++..+ ++..++++-.. ..+.+
T Consensus 128 ~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~---~--~v~~~~~l~d~~~~i~~D~~----gnl~~ 198 (321)
T PF03178_consen 128 SPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP---R--WVTAAEFLVDEDTIIVGDKD----GNLFV 198 (321)
T ss_dssp BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS----B--EEEEEEEE-SSSEEEEEETT----SEEEE
T ss_pred ceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC---c--cEEEEEEecCCcEEEEEcCC----CeEEE
Confidence 22244556677887776544322 455678866667777642221 1 12233334 44444444333 56778
Q ss_pred EeecCCC
Q 013797 401 YTCCPSS 407 (436)
Q Consensus 401 y~~~p~~ 407 (436)
+.++|+.
T Consensus 199 l~~~~~~ 205 (321)
T PF03178_consen 199 LRYNPEI 205 (321)
T ss_dssp EEE-SS-
T ss_pred EEECCCC
Confidence 8888754
No 98
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.75 E-value=15 Score=41.54 Aligned_cols=233 Identities=11% Similarity=0.069 Sum_probs=118.1
Q ss_pred CeEEEeccCCCeEEEEecCCCCeEeCCCCCC---------CCCccCCCeeeEE--eCCEEEEEceecCCCeEEEEECCCC
Q 013797 142 PSVFMLASGDSSWWAFDRHFQTRRKLPELPS---------DPCFKLGDKESLC--AGTHLIVSGNEIEGGVIWRYELETN 210 (436)
Q Consensus 142 ~~l~~~~~~~~~~~~~dp~~~~W~~l~~~~~---------~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~v~~ydp~t~ 210 (436)
..+|+.-.+.+.+..+|+....-..+..-.. ...+... ..++. .++.|||... ....+.++|+.++
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P-~GIavd~~gn~LYVaDt--~n~~Ir~id~~~~ 656 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRP-QGLAYNAKKNLLYVADT--ENHALREIDFVNE 656 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCC-cEEEEeCCCCEEEEEeC--CCceEEEEecCCC
Confidence 3455554456778888876543323322100 0011111 12333 2567898743 2357888999887
Q ss_pred CEEeCCCC-------CC------C--CcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCC------
Q 013797 211 NWFKGPSM-------RR------P--RCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGM------ 267 (436)
Q Consensus 211 ~W~~l~~~-------p~------~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~------ 267 (436)
.-+.+... .. . ..-+.+++- ++.+||.... .+.+++||+.++....+..-
T Consensus 657 ~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 657 TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEEecCCccccC
Confidence 66554211 00 0 011223332 6789988542 24588888877655432110
Q ss_pred ----cc--CCcce-eEEEE-C-CEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCC----CCCCC-------C---CCCC
Q 013797 268 ----RQ--RRKLC-SGCYM-D-NKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPD----ILKDF-------P---AETG 324 (436)
Q Consensus 268 ----p~--~r~~~-~~~~~-~-g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~----~~~~~-------~---~~~~ 324 (436)
.. ....+ +.++. + +.|||... ..+.|.+||+.++.-..+.. .+... . ....
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs------~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADS------ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEEC------CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 00 00111 22232 3 45998865 34678999998765332210 00000 0 0001
Q ss_pred CCCCEEEE-ECCEEEEEecCCCeEEEEECCCCcEEEcccCCCc---------cCCCCCceEEEEEeCCEEEEEcCCC
Q 013797 325 KSPPLIAV-VNNELYSLETSSNELRVYLKDSNSWKNLGLVPVR---------ADFNRGWGIAFKSLGNELLVIGASS 391 (436)
Q Consensus 325 r~~~~~~~-~~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~---------~~~~~~~~~~~~~~~~~l~v~GG~~ 391 (436)
....++++ -+|.||+.....+.|.+||++++....+...... .....-.++++ .-+|+|||....+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav-d~dG~lyVaDt~N 879 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL-GENGRLFVADTNN 879 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE-eCCCCEEEEECCC
Confidence 11123333 3678999988888999999999877766432210 00112233443 3467899987655
No 99
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.54 E-value=5.4 Score=36.78 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=87.7
Q ss_pred CCEEEEEceecCCCeEEEEECC-----CCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCe
Q 013797 187 GTHLIVSGNEIEGGVIWRYELE-----TNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW 261 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~-----t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 261 (436)
.+.+|++.+.... .++.|.-. .++..+.-.+|.+..+...++++|.+|.--. ..+.+.+||+.+++=
T Consensus 30 ~~~iy~~~~~~~~-~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-------~s~~IvkydL~t~~v 101 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-------NSRNIVKYDLTTRSV 101 (250)
T ss_pred CCCEEEECccCCC-EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-------CCceEEEEECcCCcE
Confidence 5678888775444 66666432 2333333346666777788889998887643 356799999999874
Q ss_pred E---eCCCCcc---------CCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC----cEEEcCCCCCCCCCCCCC
Q 013797 262 D---SLPGMRQ---------RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG----TWYHIPDILKDFPAETGK 325 (436)
Q Consensus 262 ~---~~~~~p~---------~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~----~W~~v~~~~~~~~~~~~r 325 (436)
. .++.... +......++-.+-|+|+-...... ..-.+-..|+.+- +|..- .+ ..
T Consensus 102 ~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~T~--~~------k~- 171 (250)
T PF02191_consen 102 VARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWNTS--YP------KR- 171 (250)
T ss_pred EEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEEec--cC------ch-
Confidence 4 4433211 111123344444577764432221 1123345666543 67642 22 12
Q ss_pred CCCEEEEECCEEEEEecCC----CeEEEEECCCCcEEEc
Q 013797 326 SPPLIAVVNNELYSLETSS----NELRVYLKDSNSWKNL 360 (436)
Q Consensus 326 ~~~~~~~~~g~lyv~gg~~----~~i~~yd~~~~~W~~v 360 (436)
....+.++-|.||++.... .-.++||..+++=..+
T Consensus 172 ~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 172 SAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV 210 (250)
T ss_pred hhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceece
Confidence 2223455668999997542 2358899988765544
No 100
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.37 E-value=3.5 Score=40.64 Aligned_cols=260 Identities=14% Similarity=0.113 Sum_probs=124.7
Q ss_pred CCCCChHHHHHHhhccCCcccccccccccH---hhhhhhccchhHHHHhhcCccCCeEEEeccCCCeEEEEecCCCCeEe
Q 013797 90 FVPSLSDELEVLIVARVPRAEYWKFYLLNK---RFLSLLKSGELFKIRREIGFREPSVFMLASGDSSWWAFDRHFQTRRK 166 (436)
Q Consensus 90 ~~~~LPddl~~~ILarLP~~~l~~~~~Vck---~w~~li~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~dp~~~~W~~ 166 (436)
+-|.=|+|.+...-+|+-.-+ .+-+.|.| +|+..+.+-.|-. ...++..++....+..||..+..-
T Consensus 34 fsp~~P~d~aVt~S~rvqly~-~~~~~~~k~~srFk~~v~s~~fR~--------DG~LlaaGD~sG~V~vfD~k~r~i-- 102 (487)
T KOG0310|consen 34 FSPKHPYDFAVTSSVRVQLYS-SVTRSVRKTFSRFKDVVYSVDFRS--------DGRLLAAGDESGHVKVFDMKSRVI-- 102 (487)
T ss_pred cCCCCCCceEEecccEEEEEe-cchhhhhhhHHhhccceeEEEeec--------CCeEEEccCCcCcEEEeccccHHH--
Confidence 456778887776666654322 12233444 5556666655532 233444444456778888544211
Q ss_pred CCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCCEE-eCCCCC-CCCcccEEEEeCCEEEEEcCcCCCC
Q 013797 167 LPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNNWF-KGPSMR-RPRCLFASATCGTFAFVAGGHGMDG 244 (436)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~-~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~ 244 (436)
+..+..+....+. .-....++.+++.|++. ..+..+|..+..-+ .+.... .-| .-++...+++|++.||+++
T Consensus 103 LR~~~ah~apv~~-~~f~~~d~t~l~s~sDd--~v~k~~d~s~a~v~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg-- 176 (487)
T KOG0310|consen 103 LRQLYAHQAPVHV-TKFSPQDNTMLVSGSDD--KVVKYWDLSTAYVQAELSGHTDYVR-CGDISPANDHIVVTGSYDG-- 176 (487)
T ss_pred HHHHhhccCceeE-EEecccCCeEEEecCCC--ceEEEEEcCCcEEEEEecCCcceeE-eeccccCCCeEEEecCCCc--
Confidence 1111111110000 00224588888888643 34555555555421 111111 111 1122334788999999875
Q ss_pred CCccceEEEEeCCCC-CeEeCCCCccCCcceeEEEE-CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCC
Q 013797 245 SGVLNSAERYNPETK-SWDSLPGMRQRRKLCSGCYM-DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAE 322 (436)
Q Consensus 245 ~~~~~~~~~yd~~t~-~W~~~~~~p~~r~~~~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~ 322 (436)
.+-.||..+. .|.. .+.....--..+.+ +|.+.+..| -+.+-++|+.++.= .+..+..
T Consensus 177 -----~vrl~DtR~~~~~v~--elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~q-ll~~~~~----- 236 (487)
T KOG0310|consen 177 -----KVRLWDTRSLTSRVV--ELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGGQ-LLTSMFN----- 236 (487)
T ss_pred -----eEEEEEeccCCceeE--EecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCce-ehhhhhc-----
Confidence 3778998877 4432 12111111122333 334444432 24577888875531 1222210
Q ss_pred CCCCCCEEEEE-CCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCC
Q 013797 323 TGKSPPLIAVV-NNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASST 392 (436)
Q Consensus 323 ~~r~~~~~~~~-~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~ 392 (436)
....-.+++.. ++.=++-|+-...+.+|| +..|+.+-.+..+. .--.+++ ..++.-.++|..++
T Consensus 237 H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~---pvLsiav-s~dd~t~viGmsnG 301 (487)
T KOG0310|consen 237 HNKTVTCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPG---PVLSIAV-SPDDQTVVIGMSNG 301 (487)
T ss_pred ccceEEEEEeecCCceEeecccccceEEEE--ccceEEEEeeeccc---ceeeEEe-cCCCceEEEecccc
Confidence 01111122222 334444455567899999 44577775443210 0111222 45677788887765
No 101
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.19 E-value=6.2 Score=35.52 Aligned_cols=142 Identities=10% Similarity=0.082 Sum_probs=66.2
Q ss_pred CEEEEEceecCCCeEEEEECCCCCEE-eCCCCCCCCcccEEEEeC-CEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCC
Q 013797 188 THLIVSGNEIEGGVIWRYELETNNWF-KGPSMRRPRCLFASATCG-TFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLP 265 (436)
Q Consensus 188 ~~iyv~GG~~~~~~v~~ydp~t~~W~-~l~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~ 265 (436)
+.+++.++ ....+.+||+.+.+-. .+.. .......+.... +.+++.|+.+ ..+.+||..+.+-. .
T Consensus 105 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~--~ 171 (289)
T cd00200 105 GRILSSSS--RDKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQD-------GTIKLWDLRTGKCV--A 171 (289)
T ss_pred CCEEEEec--CCCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEcCC-------CcEEEEEccccccc--e
Confidence 45555554 2457889998865432 2221 111112222223 3444444312 24788888754321 1
Q ss_pred CCccCC-cceeEEEE-CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEEC-CEEEEEec
Q 013797 266 GMRQRR-KLCSGCYM-DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVN-NELYSLET 342 (436)
Q Consensus 266 ~~p~~r-~~~~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~-g~lyv~gg 342 (436)
.+.... .-...... +++.+++++. ...+..||..+.+-.. .+.. .......+.... +.+++.++
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~--~~~~-----~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 172 TLTGHTGEVNSVAFSPDGEKLLSSSS------DGTIKLWDLSTGKCLG--TLRG-----HENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred eEecCccccceEEECCCcCEEEEecC------CCcEEEEECCCCceec--chhh-----cCCceEEEEEcCCCcEEEEEc
Confidence 111111 11122222 4435555553 2357889987644322 2210 011112233333 56666655
Q ss_pred CCCeEEEEECCCC
Q 013797 343 SSNELRVYLKDSN 355 (436)
Q Consensus 343 ~~~~i~~yd~~~~ 355 (436)
..+.+..||..+.
T Consensus 239 ~~~~i~i~~~~~~ 251 (289)
T cd00200 239 EDGTIRVWDLRTG 251 (289)
T ss_pred CCCcEEEEEcCCc
Confidence 5788999998763
No 102
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.13 E-value=8.2 Score=36.79 Aligned_cols=241 Identities=13% Similarity=0.142 Sum_probs=114.7
Q ss_pred CeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCC-C-EEe------CCCCCCCCc
Q 013797 152 SSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETN-N-WFK------GPSMRRPRC 223 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~-~-W~~------l~~~p~~r~ 223 (436)
-..+.+|+.+++-..+...+.+-..... .++.-++ =|++........+-+|-..++ . |.. ..+-|.+|.
T Consensus 66 vaay~iD~~~G~Lt~ln~~~~~g~~p~y--vsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ 142 (346)
T COG2706 66 VAAYRIDPDDGRLTFLNRQTLPGSPPCY--VSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ 142 (346)
T ss_pred EEEEEEcCCCCeEEEeeccccCCCCCeE--EEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence 4556778877777666444433222111 1222233 233333334456667665442 2 211 122344452
Q ss_pred --c--cEEEE-eCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCC--CccCCcceeEEEE-CCE-EEEEeccCCCC
Q 013797 224 --L--FASAT-CGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPG--MRQRRKLCSGCYM-DNK-FYVIGGRNEKD 293 (436)
Q Consensus 224 --~--~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~r~~~~~~~~-~g~-iyv~gG~~~~~ 293 (436)
. |.+.. -++ .+++. -. -...+.+|+...+.-+...+ .+..-.-...+++ +++ .|++...+
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~-DL------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~--- 212 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVP-DL------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN--- 212 (346)
T ss_pred cCCccceeeeCCCCCEEEEe-ec------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC---
Confidence 2 22222 244 34333 11 13458888888776554422 1111111123333 455 68887644
Q ss_pred CcCCEEEEEECCCCcEEEcC---CCCCCCCCCCCCCCCEEEE-ECC-EEEEEecCCCeEEEE--ECCCCcEEEcccCCCc
Q 013797 294 KPLTCGEAYDEYAGTWYHIP---DILKDFPAETGKSPPLIAV-VNN-ELYSLETSSNELRVY--LKDSNSWKNLGLVPVR 366 (436)
Q Consensus 294 ~~~~~v~~yD~~~~~W~~v~---~~~~~~~~~~~r~~~~~~~-~~g-~lyv~gg~~~~i~~y--d~~~~~W~~v~~~p~~ 366 (436)
..-.++.||...++.++++ .+|.+- .....++++.+ -+| -||+..-..+.|.+| |+.+++-..++..+..
T Consensus 213 -stV~v~~y~~~~g~~~~lQ~i~tlP~dF--~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te 289 (346)
T COG2706 213 -STVDVLEYNPAVGKFEELQTIDTLPEDF--TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE 289 (346)
T ss_pred -CEEEEEEEcCCCceEEEeeeeccCcccc--CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC
Confidence 2335667777778888876 455432 12222333222 245 566665556677777 4555554444433322
Q ss_pred cCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCCCCccCcEEee
Q 013797 367 ADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSDAGELQWRLLE 418 (436)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W~~l~ 418 (436)
....+.+ .+...++.|++.+-.+ +.+.+|+-++++. +-+++.
T Consensus 290 g~~PR~F--~i~~~g~~Liaa~q~s----d~i~vf~~d~~TG----~L~~~~ 331 (346)
T COG2706 290 GQFPRDF--NINPSGRFLIAANQKS----DNITVFERDKETG----RLTLLG 331 (346)
T ss_pred CcCCccc--eeCCCCCEEEEEccCC----CcEEEEEEcCCCc----eEEecc
Confidence 1212222 2224444555554333 4688997665554 555555
No 103
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.93 E-value=11 Score=37.71 Aligned_cols=148 Identities=9% Similarity=0.006 Sum_probs=81.3
Q ss_pred CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEe-CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEE
Q 013797 151 DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCA-GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASAT 229 (436)
Q Consensus 151 ~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~ 229 (436)
...++.+|..+++-..+...+.... . ...+- +..|++.........++++|..+++.+++......-.. ....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~-~----~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~~s 295 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNG-A----PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTE-PFWG 295 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcC-C----eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCC-eEEC
Confidence 4578889998887777654432111 0 12233 34555433223336899999999998887653321111 1112
Q ss_pred e-CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCccee-EEEECC-EEEEEeccCCCCCcCCEEEEEECCC
Q 013797 230 C-GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCS-GCYMDN-KFYVIGGRNEKDKPLTCGEAYDEYA 306 (436)
Q Consensus 230 ~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~g-~iyv~gG~~~~~~~~~~v~~yD~~~ 306 (436)
- +..|++..... ....++.+|..+++++.+... ...... ...-+| .|++....++ ...++.+|+.+
T Consensus 296 pDg~~i~f~s~~~-----g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~----~~~l~~~dl~t 364 (430)
T PRK00178 296 KDGRTLYFTSDRG-----GKPQIYKVNVNGGRAERVTFV--GNYNARPRLSADGKTLVMVHRQDG----NFHVAAQDLQR 364 (430)
T ss_pred CCCCEEEEEECCC-----CCceEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCC----ceEEEEEECCC
Confidence 2 34565553222 134689999998888776321 111111 222244 4544432221 23589999999
Q ss_pred CcEEEcCCC
Q 013797 307 GTWYHIPDI 315 (436)
Q Consensus 307 ~~W~~v~~~ 315 (436)
+..+.+...
T Consensus 365 g~~~~lt~~ 373 (430)
T PRK00178 365 GSVRILTDT 373 (430)
T ss_pred CCEEEccCC
Confidence 988887653
No 104
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.92 E-value=20 Score=40.57 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=87.4
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCC----------CC---CCcccEEEEe--CCEEEEEcCcCCCCCCccceE
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSM----------RR---PRCLFASATC--GTFAFVAGGHGMDGSGVLNSA 251 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~----------p~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 251 (436)
++.|||... ..+.+++||+.++....+..- .. -..-..+++. ++.|||.... .+.+
T Consensus 694 ~g~LyVad~--~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------n~~I 764 (1057)
T PLN02919 694 NEKVYIAMA--GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------SSSI 764 (1057)
T ss_pred CCeEEEEEC--CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-------CCeE
Confidence 688998743 346799999988765433210 00 0011122222 3469988643 3468
Q ss_pred EEEeCCCCCeEeCC--C--Ccc--------------CC-cce-eEE-EECCEEEEEeccCCCCCcCCEEEEEECCCCcEE
Q 013797 252 ERYNPETKSWDSLP--G--MRQ--------------RR-KLC-SGC-YMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWY 310 (436)
Q Consensus 252 ~~yd~~t~~W~~~~--~--~p~--------------~r-~~~-~~~-~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~ 310 (436)
.+||+.++.-+.+. . .+. .. ..+ +.+ .-+|.+||... ..+.|.+||+.++...
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs------~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS------YNHKIKKLDPATKRVT 838 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC------CCCEEEEEECCCCeEE
Confidence 99998876533210 0 000 00 011 222 23678999875 3467899999988877
Q ss_pred EcCCCCCC-----CCCCC-CCCCCEEEE-ECCEEEEEecCCCeEEEEECCCCc
Q 013797 311 HIPDILKD-----FPAET-GKSPPLIAV-VNNELYSLETSSNELRVYLKDSNS 356 (436)
Q Consensus 311 ~v~~~~~~-----~~~~~-~r~~~~~~~-~~g~lyv~gg~~~~i~~yd~~~~~ 356 (436)
.+...... ..... .....++++ -+|+||+.....+.|.++|+++++
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 66532210 00000 112233333 368999998888899999998865
No 105
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.87 E-value=12 Score=37.88 Aligned_cols=150 Identities=13% Similarity=0.024 Sum_probs=82.0
Q ss_pred CCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEE-eCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEE
Q 013797 150 GDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLC-AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASA 228 (436)
Q Consensus 150 ~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~ 228 (436)
+...++.+|..+++-..+...+.... .. ..+ .+..|++.........++++|..+++.+++....... .....
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g~~~-~~----~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~w 313 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPGING-AP----RFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAID-TEPSW 313 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCCCcC-Ce----eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCc-cceEE
Confidence 34578899988877666654432111 11 223 2445655543334468999999999988876532111 11111
Q ss_pred EeCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC
Q 013797 229 TCGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG 307 (436)
Q Consensus 229 ~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~ 307 (436)
.-++ .|++.....+ ...++++|..+++++.+..-. .........-+|+..++.+... ....++.+|+.++
T Consensus 314 SpDG~~I~f~s~~~g-----~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~---g~~~I~~~dl~~g 384 (448)
T PRK04792 314 HPDGKSLIFTSERGG-----KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTN---GKFNIARQDLETG 384 (448)
T ss_pred CCCCCEEEEEECCCC-----CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecC---CceEEEEEECCCC
Confidence 2233 4555432221 247999999999888763211 1111112223554444433222 2346889999999
Q ss_pred cEEEcCC
Q 013797 308 TWYHIPD 314 (436)
Q Consensus 308 ~W~~v~~ 314 (436)
....+..
T Consensus 385 ~~~~lt~ 391 (448)
T PRK04792 385 AMQVLTS 391 (448)
T ss_pred CeEEccC
Confidence 8877654
No 106
>PRK02889 tolB translocation protein TolB; Provisional
Probab=92.82 E-value=12 Score=37.65 Aligned_cols=188 Identities=11% Similarity=-0.050 Sum_probs=92.3
Q ss_pred CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCC-EEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEE
Q 013797 151 DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGT-HLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASAT 229 (436)
Q Consensus 151 ~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~ 229 (436)
...++..|........+......-... ..+-+| .|++.........++++|..+++=+.+...+... ......
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p-----~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~S 248 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISP-----AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN-SAPAWS 248 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccc-----eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc-cceEEC
Confidence 356778887554444432222111110 223344 4443322223357999999988766665443211 111112
Q ss_pred eCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCE-EEEEeccCCCCCcCCEEEEEECCCC
Q 013797 230 CGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNK-FYVIGGRNEKDKPLTCGEAYDEYAG 307 (436)
Q Consensus 230 ~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-iyv~gG~~~~~~~~~~v~~yD~~~~ 307 (436)
-++ +|++....++ ..+++.+|..++..+.+..-. .........-+|+ |+...... ....++.+|..++
T Consensus 249 PDG~~la~~~~~~g-----~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~~g 318 (427)
T PRK02889 249 PDGRTLAVALSRDG-----NSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPASGG 318 (427)
T ss_pred CCCCEEEEEEccCC-----CceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCC----CCcEEEEEECCCC
Confidence 234 5555433322 346889998877766653321 1111112223554 44433211 1346888888877
Q ss_pred cEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEEEecC--CCeEEEEECCCCcEEEcc
Q 013797 308 TWYHIPDILKDFPAETGKSPPLIAVVNN-ELYSLETS--SNELRVYLKDSNSWKNLG 361 (436)
Q Consensus 308 ~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~gg~--~~~i~~yd~~~~~W~~v~ 361 (436)
..+.+..... ....+ ...-+| .|+..... ...|+++|..+++.+.+.
T Consensus 319 ~~~~lt~~g~------~~~~~-~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 319 AAQRVTFTGS------YNTSP-RISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred ceEEEecCCC------CcCce-EECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 7766642210 00111 122244 44444322 236999999988877764
No 107
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.71 E-value=12 Score=37.59 Aligned_cols=189 Identities=7% Similarity=-0.049 Sum_probs=96.8
Q ss_pred CCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCC-EEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEE
Q 013797 150 GDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGT-HLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASA 228 (436)
Q Consensus 150 ~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~ 228 (436)
+...++.+|+.++....+...+..... ...+-+| .|++.........+|++|..+++-+++...+..- .....
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g~~~~-----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~ 297 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPGMTFA-----PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAID-TSPSY 297 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCCcccC-----cEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCcc-CceeE
Confidence 346789999988887776544432111 1233344 5554433334468999999999888776533211 11112
Q ss_pred EeCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC
Q 013797 229 TCGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG 307 (436)
Q Consensus 229 ~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~ 307 (436)
.-++ +|++.....+ ...++++|..+...+.+.... .........-+|+..++..... ....++.+|+.++
T Consensus 298 spDG~~i~f~s~~~g-----~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~---~~~~i~~~d~~~~ 368 (435)
T PRK05137 298 SPDGSQIVFESDRSG-----SPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGG---GQFSIGVMKPDGS 368 (435)
T ss_pred cCCCCEEEEEECCCC-----CCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCC---CceEEEEEECCCC
Confidence 2234 4544332221 246899998887776663221 1111112223454333322211 1246889998777
Q ss_pred cEEEcCCCCCCCCCCCCCCCCEEEEECCE-EEEEecC--C---CeEEEEECCCCcEEEcc
Q 013797 308 TWYHIPDILKDFPAETGKSPPLIAVVNNE-LYSLETS--S---NELRVYLKDSNSWKNLG 361 (436)
Q Consensus 308 ~W~~v~~~~~~~~~~~~r~~~~~~~~~g~-lyv~gg~--~---~~i~~yd~~~~~W~~v~ 361 (436)
....+..... . ..+. ..-+|+ |+..... . ..++.+|.....-+.+.
T Consensus 369 ~~~~lt~~~~---~----~~p~-~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 369 GERILTSGFL---V----EGPT-WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ceEeccCCCC---C----CCCe-ECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 6665543210 0 1111 222444 4443321 1 46888898776555553
No 108
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.39 E-value=14 Score=37.72 Aligned_cols=117 Identities=12% Similarity=0.098 Sum_probs=67.0
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCCCC----CC-cccEEEEeC-CEEEEEcCcCCCCCCccceEEEE
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSMRR----PR-CLFASATCG-TFAFVAGGHGMDGSGVLNSAERY 254 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~----~r-~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~y 254 (436)
-+..++.||+... ...++.+|+.|++ |+.-...+. +. .....++.+ ++||+... ...+..+
T Consensus 57 Pvv~~g~vy~~~~---~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------~g~v~Al 125 (488)
T cd00216 57 PLVVDGDMYFTTS---HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------DGRLVAL 125 (488)
T ss_pred CEEECCEEEEeCC---CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--------CCeEEEE
Confidence 3567899998753 2578999998876 876432221 10 111233446 78887542 1258889
Q ss_pred eCCCCC--eEeCCCCcc-CC--cceeEEEECCEEEEEeccCCCC---CcCCEEEEEECCCC--cEEE
Q 013797 255 NPETKS--WDSLPGMRQ-RR--KLCSGCYMDNKFYVIGGRNEKD---KPLTCGEAYDEYAG--TWYH 311 (436)
Q Consensus 255 d~~t~~--W~~~~~~p~-~r--~~~~~~~~~g~iyv~gG~~~~~---~~~~~v~~yD~~~~--~W~~ 311 (436)
|.++++ |+.-...+. .. ...+.++.++.+|+-. ..... .....++++|..++ .|+.
T Consensus 126 D~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~-~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 126 DAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGS-SGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred ECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEec-cccccccCCCCcEEEEEECCCCceeeEe
Confidence 998776 875432221 00 1233456677776532 21110 12457899999877 5865
No 109
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=91.95 E-value=3.5 Score=40.22 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=57.0
Q ss_pred CCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCC-CCCCCCEEEEECCE
Q 013797 258 TKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAE-TGKSPPLIAVVNNE 336 (436)
Q Consensus 258 t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~-~~r~~~~~~~~~g~ 336 (436)
.+.|+.+..+ ....-..++++|++|++. ....++.+|.+- .=.++.+...+.... .......+|...|+
T Consensus 189 ~~~Wt~l~~~--~~~~~DIi~~kGkfYAvD-------~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd 258 (373)
T PLN03215 189 GNVLKALKQM--GYHFSDIIVHKGQTYALD-------SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGE 258 (373)
T ss_pred CCeeeEccCC--CceeeEEEEECCEEEEEc-------CCCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCE
Confidence 4899999642 222456789999999994 234567777431 112222211100000 11122447788899
Q ss_pred EEEEecCC-----------------C--eEEEEECCCCcEEEcccCCC
Q 013797 337 LYSLETSS-----------------N--ELRVYLKDSNSWKNLGLVPV 365 (436)
Q Consensus 337 lyv~gg~~-----------------~--~i~~yd~~~~~W~~v~~~p~ 365 (436)
|+++.... . .|+..|.+..+|.++..+..
T Consensus 259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 99996421 1 24555878889999987764
No 110
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.94 E-value=11 Score=35.31 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=82.8
Q ss_pred CeEEEEECCCCC----EEeCCCCCCCCcccEE-EE---eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCC
Q 013797 200 GVIWRYELETNN----WFKGPSMRRPRCLFAS-AT---CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRR 271 (436)
Q Consensus 200 ~~v~~ydp~t~~----W~~l~~~p~~r~~~~~-~~---~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r 271 (436)
+.+..||..+++ |.+--.-+....+-.+ .. +++.+++.-+..- ..--++..|.+++.=+.+..-|...
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh----~nLGvy~ldr~~g~~~~L~~~ps~K 153 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGH----ANLGVYSLDRRTGKAEKLSSNPSLK 153 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCc----ceeeeEEEcccCCceeeccCCCCcC
Confidence 678999998887 5543322222211111 11 3677887754221 2334788888898888876655543
Q ss_pred cceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcE--EEcCC-CCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEE
Q 013797 272 KLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTW--YHIPD-ILKDFPAETGKSPPLIAVVNNELYSLETSSNELR 348 (436)
Q Consensus 272 ~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W--~~v~~-~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~ 348 (436)
.+.+++..++-+ +........+++||+.+++| ...+. ...+......+...+++...+++|.+- .+.+.
T Consensus 154 ---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~--rGGi~ 225 (339)
T PF09910_consen 154 ---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV--RGGIF 225 (339)
T ss_pred ---ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEE--eccEE
Confidence 233444444433 22223577899999999999 43331 111111122334455677788888873 25688
Q ss_pred EEECCC
Q 013797 349 VYLKDS 354 (436)
Q Consensus 349 ~yd~~~ 354 (436)
+.||-.
T Consensus 226 vgnP~~ 231 (339)
T PF09910_consen 226 VGNPYN 231 (339)
T ss_pred EeCCCC
Confidence 999874
No 111
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.82 E-value=15 Score=36.81 Aligned_cols=146 Identities=6% Similarity=-0.124 Sum_probs=78.1
Q ss_pred CCeEEEEECCCCCEEeCCCCCCCCcccEEEEeC-CEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE
Q 013797 199 GGVIWRYELETNNWFKGPSMRRPRCLFASATCG-TFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC 277 (436)
Q Consensus 199 ~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 277 (436)
...++++|..+++-+.+...+..-.. ....-+ .+|++.....+ ..+++++|..+++.+.+..-.... .....
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g-----~~~I~~~d~~tg~~~~lt~~~~~~-~~~~w 294 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG-----SLNLYVMDLASGQIRQVTDGRSNN-TEPTW 294 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC-----CcEEEEEECCCCCEEEccCCCCCc-CceEE
Confidence 35799999999887777655432211 111123 45655533222 235899999998877764332111 11111
Q ss_pred EECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEEEecC--CCeEEEEECCC
Q 013797 278 YMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN-ELYSLETS--SNELRVYLKDS 354 (436)
Q Consensus 278 ~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~gg~--~~~i~~yd~~~ 354 (436)
.-+|+..++..... ....++.+|+.++.-..+..... . .......-+| .|+..... ...++.+|+++
T Consensus 295 SPDG~~I~f~s~~~---g~~~Iy~~d~~~g~~~~lt~~~~------~-~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 295 FPDSQNLAYTSDQA---GRPQVYKVNINGGAPQRITWEGS------Q-NQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred CCCCCEEEEEeCCC---CCceEEEEECCCCCeEEeecCCC------C-ccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 22555333332111 13468888998877666643210 0 1111122244 44444322 34689999999
Q ss_pred CcEEEcc
Q 013797 355 NSWKNLG 361 (436)
Q Consensus 355 ~~W~~v~ 361 (436)
++++.+.
T Consensus 365 g~~~~Lt 371 (429)
T PRK03629 365 GGVQVLT 371 (429)
T ss_pred CCeEEeC
Confidence 9988875
No 112
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.42 E-value=5.9 Score=39.15 Aligned_cols=137 Identities=11% Similarity=0.099 Sum_probs=70.7
Q ss_pred CeEEEEECCCCCEEe-CCCCCCCCcccEEE-EeCCEEEEEcCcCCCCCCccceEEEEeCCCCC-eEeCCCCccCCcceeE
Q 013797 200 GVIWRYELETNNWFK-GPSMRRPRCLFASA-TCGTFAFVAGGHGMDGSGVLNSAERYNPETKS-WDSLPGMRQRRKLCSG 276 (436)
Q Consensus 200 ~~v~~ydp~t~~W~~-l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~r~~~~~ 276 (436)
..+.+|+..+..-.+ +..+. +.-+++. -.+|+++.+|+..+ .+.+||..+.. -+.+..-..+....-.
T Consensus 48 ~rvqly~~~~~~~~k~~srFk--~~v~s~~fR~DG~LlaaGD~sG-------~V~vfD~k~r~iLR~~~ah~apv~~~~f 118 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFK--DVVYSVDFRSDGRLLAAGDESG-------HVKVFDMKSRVILRQLYAHQAPVHVTKF 118 (487)
T ss_pred cEEEEEecchhhhhhhHHhhc--cceeEEEeecCCeEEEccCCcC-------cEEEeccccHHHHHHHhhccCceeEEEe
Confidence 356777766654332 22111 1112222 23799999998664 37889955421 1111110111111111
Q ss_pred EEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCc
Q 013797 277 CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNS 356 (436)
Q Consensus 277 ~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~ 356 (436)
...++.+++.|+-+ ..+..+|..+..- . ..+.. +...-|+ ..+.-.++.|++.|++.+.|..||..+.+
T Consensus 119 ~~~d~t~l~s~sDd------~v~k~~d~s~a~v-~-~~l~~--htDYVR~-g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDD------KVVKYWDLSTAYV-Q-AELSG--HTDYVRC-GDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred cccCCeEEEecCCC------ceEEEEEcCCcEE-E-EEecC--CcceeEe-eccccCCCeEEEecCCCceEEEEEeccCC
Confidence 23578888888633 2334555555542 1 12211 0002222 22344578899999999999999998873
No 113
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.45 E-value=21 Score=35.80 Aligned_cols=144 Identities=10% Similarity=0.012 Sum_probs=83.2
Q ss_pred CCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE
Q 013797 199 GGVIWRYELETNNWFKGPSMRRPRCLFASATCGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC 277 (436)
Q Consensus 199 ~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 277 (436)
...+|++|+.+++=+.+...+.. .......-++ +|.+.....+ ..+++++|..++.++.+...+.. ......
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g-----~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~ 284 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKG-----QPDIYLYDTNTKTLTQITNYPGI-DVNGNF 284 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCC-----CcEEEEEECCCCcEEEcccCCCc-cCccEE
Confidence 45899999999987777653211 1111122244 5555443322 35799999999999888544321 111112
Q ss_pred EECC-EEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEEEecC--------CCeE
Q 013797 278 YMDN-KFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN-ELYSLETS--------SNEL 347 (436)
Q Consensus 278 ~~~g-~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~gg~--------~~~i 347 (436)
.-+| +||...... ....++.+|+.++..+++..... ... ...-+| .|...... ...|
T Consensus 285 SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g~--------~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 285 VEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFHGK--------NNS-SVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred CCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccCCC--------cCc-eECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 2244 576665432 23578999999998877653221 111 222244 34333221 1479
Q ss_pred EEEECCCCcEEEccc
Q 013797 348 RVYLKDSNSWKNLGL 362 (436)
Q Consensus 348 ~~yd~~~~~W~~v~~ 362 (436)
+++|++++.++.+..
T Consensus 352 ~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 352 YLISTNSDYIRRLTA 366 (419)
T ss_pred EEEECCCCCeEECCC
Confidence 999999999988864
No 114
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.43 E-value=2.7 Score=40.31 Aligned_cols=131 Identities=14% Similarity=0.020 Sum_probs=80.3
Q ss_pred CeEEEEECCCC-----CEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC-eEeCCCCccCCcc
Q 013797 200 GVIWRYELETN-----NWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS-WDSLPGMRQRRKL 273 (436)
Q Consensus 200 ~~v~~ydp~t~-----~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~r~~ 273 (436)
..+++|+.... +.+.+.....+-.-.+++.+++++.+..| +.+.+|+...++ +...+.+..+-..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g---------~~l~v~~l~~~~~l~~~~~~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG---------NKLYVYDLDNSKTLLKKAFYDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET---------TEEEEEEEETTSSEEEEEEE-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec---------CEEEEEEccCcccchhhheecceEEE
Confidence 56889988885 56666554444445677778999776655 247888888877 8777666555555
Q ss_pred eeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEE-CCEEEEEecCCCeEEEE
Q 013797 274 CSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVV-NNELYSLETSSNELRVY 350 (436)
Q Consensus 274 ~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~~~~i~~y 350 (436)
.+..++++.|++-.-.. .-.++.|+....+-..++.-. .++...++..+ ++..++++...+.+..+
T Consensus 133 ~sl~~~~~~I~vgD~~~-----sv~~~~~~~~~~~l~~va~d~------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAMK-----SVSLLRYDEENNKLILVARDY------QPRWVTAAEFLVDEDTIIVGDKDGNLFVL 199 (321)
T ss_dssp EEEEEETTEEEEEESSS-----SEEEEEEETTTE-EEEEEEES------S-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred EEEeccccEEEEEEccc-----CEEEEEEEccCCEEEEEEecC------CCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence 66677888777654322 223557787666677666422 24444455556 66555555555655544
No 115
>PRK13684 Ycf48-like protein; Provisional
Probab=90.11 E-value=19 Score=34.83 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=89.1
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEE-EeCCCCCeEeCC
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAER-YNPETKSWDSLP 265 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~-yd~~t~~W~~~~ 265 (436)
++.+++.|. ...+++-+-.-.+|+.+.... .-..+.+....+..+++.|..+. ++. .|....+|+.+.
T Consensus 142 ~~~~~~~g~---~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~-------i~~s~~~gg~tW~~~~ 210 (334)
T PRK13684 142 PGTAEMATN---VGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGN-------FYSTWEPGQTAWTPHQ 210 (334)
T ss_pred CCcceeeec---cceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCce-------EEEEcCCCCCeEEEee
Confidence 444565543 234555555567899886533 22334444444445555443321 222 244456799885
Q ss_pred CCccCCcceeEEE-ECCEEEEEeccCCCCCcCCEEEEEE-C-CCCcEEEcCCCCCCCCCCCCCCCCEEEEE-CCEEEEEe
Q 013797 266 GMRQRRKLCSGCY-MDNKFYVIGGRNEKDKPLTCGEAYD-E-YAGTWYHIPDILKDFPAETGKSPPLIAVV-NNELYSLE 341 (436)
Q Consensus 266 ~~p~~r~~~~~~~-~~g~iyv~gG~~~~~~~~~~v~~yD-~-~~~~W~~v~~~~~~~~~~~~r~~~~~~~~-~g~lyv~g 341 (436)
. +..+...+++. -++.++++|... ...+. . .-.+|+.+...... .......++.. ++.+|++|
T Consensus 211 ~-~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s~d~G~sW~~~~~~~~~----~~~~l~~v~~~~~~~~~~~G 277 (334)
T PRK13684 211 R-NSSRRLQSMGFQPDGNLWMLARGG--------QIRFNDPDDLESWSKPIIPEIT----NGYGYLDLAYRTPGEIWAGG 277 (334)
T ss_pred C-CCcccceeeeEcCCCCEEEEecCC--------EEEEccCCCCCccccccCCccc----cccceeeEEEcCCCCEEEEc
Confidence 4 33333334333 467888886421 23342 2 23489976432100 11111223333 56888886
Q ss_pred cCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCC
Q 013797 342 TSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASS 391 (436)
Q Consensus 342 g~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~ 391 (436)
. .+.+..-.-...+|+.+......+ .....+ +...++++|++|...
T Consensus 278 ~-~G~v~~S~d~G~tW~~~~~~~~~~--~~~~~~-~~~~~~~~~~~G~~G 323 (334)
T PRK13684 278 G-NGTLLVSKDGGKTWEKDPVGEEVP--SNFYKI-VFLDPEKGFVLGQRG 323 (334)
T ss_pred C-CCeEEEeCCCCCCCeECCcCCCCC--cceEEE-EEeCCCceEEECCCc
Confidence 5 455555455567999975322211 112222 225678888888654
No 116
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.53 E-value=3.3 Score=39.62 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=87.8
Q ss_pred CccCCeEEEecc-CCCeEEEEecCCCCeEeCCCCCCCCCcc-----CCCeeeEEeCCEEEEEc----eecCCCeEEEEEC
Q 013797 138 GFREPSVFMLAS-GDSSWWAFDRHFQTRRKLPELPSDPCFK-----LGDKESLCAGTHLIVSG----NEIEGGVIWRYEL 207 (436)
Q Consensus 138 ~~~~~~l~~~~~-~~~~~~~~dp~~~~W~~l~~~~~~~~~~-----~~~~~~~~~~~~iyv~G----G~~~~~~v~~ydp 207 (436)
+....+++++.- +...+-+.|...++-..- ++.|-|.. ...+++.|-+|.+..+. |......-.+|++
T Consensus 103 s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~e--i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~ 180 (342)
T PF06433_consen 103 SADGKFLYVQNFTPATSVTVVDLAAKKVVGE--IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP 180 (342)
T ss_dssp -TTSSEEEEEEESSSEEEEEEETTTTEEEEE--EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred ccCCcEEEEEccCCCCeEEEEECCCCceeee--ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence 334556666543 556777788877665432 22221111 01133455566555442 2111122235555
Q ss_pred CCCCEEeCCCCCCCCcccEEEEeCCEEEEE--cCcCCCCCCccceEEEEeCCC-----CCeEeCCCCccCCcceeEEE--
Q 013797 208 ETNNWFKGPSMRRPRCLFASATCGTFAFVA--GGHGMDGSGVLNSAERYNPET-----KSWDSLPGMRQRRKLCSGCY-- 278 (436)
Q Consensus 208 ~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~yd~~t-----~~W~~~~~~p~~r~~~~~~~-- 278 (436)
...-.-.-+.............++|.+|-+ +|.. ..-...+...+ ..|+.- +. ...++
T Consensus 181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~------~~~~~~~~~~t~~e~~~~WrPG-----G~--Q~~A~~~ 247 (342)
T PF06433_consen 181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS------AKFGKPWSLLTDAEKADGWRPG-----GW--QLIAYHA 247 (342)
T ss_dssp TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS------EEEEEEEESS-HHHHHTTEEE------SS--S-EEEET
T ss_pred CCcccccccceECCCCeEEEEecCCEEEEEeccCCc------ccccCcccccCccccccCcCCc-----ce--eeeeecc
Confidence 443211111111111122335567777774 3321 11122333322 346532 11 22233
Q ss_pred ECCEEEEEe---ccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEEC-C--EEEEEecCCCeEEEEEC
Q 013797 279 MDNKFYVIG---GRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVN-N--ELYSLETSSNELRVYLK 352 (436)
Q Consensus 279 ~~g~iyv~g---G~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~-g--~lyv~gg~~~~i~~yd~ 352 (436)
..++||++- +..........||+||+++.+=-.--++. ...-++.+-. . .||.+....+.+.+||.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--------EEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--------CccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 368899883 22222234678999999998632211211 0111233433 3 57777655678999999
Q ss_pred CCCc
Q 013797 353 DSNS 356 (436)
Q Consensus 353 ~~~~ 356 (436)
.+++
T Consensus 320 ~tGk 323 (342)
T PF06433_consen 320 ATGK 323 (342)
T ss_dssp TT--
T ss_pred cCCc
Confidence 9874
No 117
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.44 E-value=22 Score=34.73 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=86.2
Q ss_pred EEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC-
Q 013797 184 LCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS- 260 (436)
Q Consensus 184 ~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~- 260 (436)
+..++.+|+.. ....++.+|+.+.+ |.....--..........-+|+||+-.... .+++||..+++
T Consensus 65 ~~~dg~v~~~~---~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g--------~~y~ld~~~G~~ 133 (370)
T COG1520 65 ADGDGTVYVGT---RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG--------KLYALDASTGTL 133 (370)
T ss_pred EeeCCeEEEec---CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc--------eEEEEECCCCcE
Confidence 66788999862 22379999999988 866443200111111222277877654321 58889986554
Q ss_pred -eEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC--cEEEcCCCCCCCCCCCCCCCCEEEEECCEE
Q 013797 261 -WDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG--TWYHIPDILKDFPAETGKSPPLIAVVNNEL 337 (436)
Q Consensus 261 -W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~--~W~~v~~~~~~~~~~~~r~~~~~~~~~g~l 337 (436)
|+.-.... .+.....++.++.+|+.. ....++++|..++ .|..-.+.+. ..+.....+..++.+
T Consensus 134 ~W~~~~~~~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~-----~~~~~~~~~~~~~~v 200 (370)
T COG1520 134 VWSRNVGGS-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPL-----SLSIYGSPAIASGTV 200 (370)
T ss_pred EEEEecCCC-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCcc-----ccccccCceeecceE
Confidence 87543322 333444566778888763 1345788888765 5874332210 111111122556777
Q ss_pred EEEecC-CCeEEEEECCCC--cEEE
Q 013797 338 YSLETS-SNELRVYLKDSN--SWKN 359 (436)
Q Consensus 338 yv~gg~-~~~i~~yd~~~~--~W~~ 359 (436)
|+-... ...++.+|++++ .|..
T Consensus 201 y~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 201 YVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred EEecCCCcceEEEEEccCCcEeeee
Confidence 776331 346999999765 5875
No 118
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.03 E-value=24 Score=34.53 Aligned_cols=197 Identities=13% Similarity=0.051 Sum_probs=102.4
Q ss_pred CeEEEeccCCCeEEEEecCCCC--eEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCC
Q 013797 142 PSVFMLASGDSSWWAFDRHFQT--RRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPS 217 (436)
Q Consensus 142 ~~l~~~~~~~~~~~~~dp~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~ 217 (436)
..+|+... ...++++|+.+.+ |............. -....+|.||+-.... .++++|..+++ |..--+
T Consensus 69 g~v~~~~~-~G~i~A~d~~~g~~~W~~~~~~~~~~~~~----~~~~~~G~i~~g~~~g---~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 69 GTVYVGTR-DGNIFALNPDTGLVKWSYPLLGAVAQLSG----PILGSDGKIYVGSWDG---KLYALDASTGTLVWSRNVG 140 (370)
T ss_pred CeEEEecC-CCcEEEEeCCCCcEEecccCcCcceeccC----ceEEeCCeEEEecccc---eEEEEECCCCcEEEEEecC
Confidence 33444322 3378899999877 86533220011111 1334478888764322 79999997665 765443
Q ss_pred CCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeCCCC-ccCCcceeEEEECCEEEEEeccCCCCC
Q 013797 218 MRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSLPGM-RQRRKLCSGCYMDNKFYVIGGRNEKDK 294 (436)
Q Consensus 218 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~-p~~r~~~~~~~~~g~iyv~gG~~~~~~ 294 (436)
.. ++..-+.+..++.+|+.. . ...+..+|..+++ |+.--+. ...+.....+..++.+|+-... .
T Consensus 141 ~~-~~~~~~~v~~~~~v~~~s---~-----~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~--- 207 (370)
T COG1520 141 GS-PYYASPPVVGDGTVYVGT---D-----DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-Y--- 207 (370)
T ss_pred CC-eEEecCcEEcCcEEEEec---C-----CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-C---
Confidence 31 333333444566777664 1 1347778887664 8743222 1222222233667778775321 0
Q ss_pred cCCEEEEEECCCC--cEEEcCCCCCCCCCC--CCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cEEEcc
Q 013797 295 PLTCGEAYDEYAG--TWYHIPDILKDFPAE--TGKSPPLIAVVNNELYSLETSSNELRVYLKDSN--SWKNLG 361 (436)
Q Consensus 295 ~~~~v~~yD~~~~--~W~~v~~~~~~~~~~--~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~--~W~~v~ 361 (436)
...++.+|+.++ .|..-...+...... .+......+.+++.+|... ..+.+.++|..+. .|+.-.
T Consensus 208 -~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 208 -DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGS-YGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred -cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEe-cCCeEEEEEcCCCceEEEEec
Confidence 226889999776 587432221110000 1222333455566654443 3456888887654 577643
No 119
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.90 E-value=17 Score=32.58 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=65.9
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEE-eCCCCCCCCcccEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCCCeE-e
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWF-KGPSMRRPRCLFASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETKSWD-S 263 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~-~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~ 263 (436)
++..++.++. ...+.+||..+++-. .+... ......+... ++.+++.++.+ ..+.+||..+..-. .
T Consensus 62 ~~~~l~~~~~--~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 62 DGTYLASGSS--DKTIRLWDLETGECVRTLTGH--TSYVSSVAFSPDGRILSSSSRD-------KTIKVWDVETGKCLTT 130 (289)
T ss_pred CCCEEEEEcC--CCeEEEEEcCcccceEEEecc--CCcEEEEEEcCCCCEEEEecCC-------CeEEEEECCCcEEEEE
Confidence 3434444443 457889998875321 11111 1111222222 34566665522 24788998754422 2
Q ss_pred CCCCccCCcceeEEEEC-CEEEEEeccCCCCCcCCEEEEEECCCCcE-EEcCCCCCCCCCCCCCCCCEEEEE-CCEEEEE
Q 013797 264 LPGMRQRRKLCSGCYMD-NKFYVIGGRNEKDKPLTCGEAYDEYAGTW-YHIPDILKDFPAETGKSPPLIAVV-NNELYSL 340 (436)
Q Consensus 264 ~~~~p~~r~~~~~~~~~-g~iyv~gG~~~~~~~~~~v~~yD~~~~~W-~~v~~~~~~~~~~~~r~~~~~~~~-~g~lyv~ 340 (436)
+.. ....-....... +.+++.+.. ...+..||..+.+- ..+... ......+... ++..+++
T Consensus 131 ~~~--~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~ 194 (289)
T cd00200 131 LRG--HTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGKCVATLTGH--------TGEVNSVAFSPDGEKLLS 194 (289)
T ss_pred ecc--CCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccccceeEecC--------ccccceEEECCCcCEEEE
Confidence 221 111111222333 445444431 23578899875431 111111 0011122322 3445555
Q ss_pred ecCCCeEEEEECCCCc
Q 013797 341 ETSSNELRVYLKDSNS 356 (436)
Q Consensus 341 gg~~~~i~~yd~~~~~ 356 (436)
++..+.+.+||..+.+
T Consensus 195 ~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 195 SSSDGTIKLWDLSTGK 210 (289)
T ss_pred ecCCCcEEEEECCCCc
Confidence 5667889999998643
No 120
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=88.84 E-value=7 Score=33.38 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=49.3
Q ss_pred EEECCEEEEEeccCCCCCcCCEEEEEECCCCcE-EEcCCCCCCCCCCCCCCCCEE-EEECCEEEEEecC----CCeEEEE
Q 013797 277 CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTW-YHIPDILKDFPAETGKSPPLI-AVVNNELYSLETS----SNELRVY 350 (436)
Q Consensus 277 ~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W-~~v~~~~~~~~~~~~r~~~~~-~~~~g~lyv~gg~----~~~i~~y 350 (436)
+.++|.+|.++...... ....+.+||+.+++. ..++ +|.... .......+ ++.+++|.++... .-+||+-
T Consensus 2 V~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~-lP~~~~--~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm 77 (164)
T PF07734_consen 2 VFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLP-LPFCND--DDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVM 77 (164)
T ss_pred EEECCEEEeeEEecCCC-CceEEEEEeccccccCCEEC-CCCccC--ccCCEEEEEEecCCEEEEEEeccCCccEEEEEE
Confidence 67899999998754432 222699999999999 5444 442111 11122333 2336788777421 2367776
Q ss_pred EC---CCCcEEEccc
Q 013797 351 LK---DSNSWKNLGL 362 (436)
Q Consensus 351 d~---~~~~W~~v~~ 362 (436)
+. ....|+++=.
T Consensus 78 ~~~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 78 KKYGYGKESWTKLFT 92 (164)
T ss_pred eeeccCcceEEEEEE
Confidence 52 3678999743
No 121
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.77 E-value=30 Score=35.37 Aligned_cols=205 Identities=17% Similarity=0.185 Sum_probs=100.4
Q ss_pred CCeEEEEecCCCC--eEeCCCCCCCCCcc-CCCeeeEEeC-CEEEEEceecCCCeEEEEECCCCC--EEeCCCCCC-CC-
Q 013797 151 DSSWWAFDRHFQT--RRKLPELPSDPCFK-LGDKESLCAG-THLIVSGNEIEGGVIWRYELETNN--WFKGPSMRR-PR- 222 (436)
Q Consensus 151 ~~~~~~~dp~~~~--W~~l~~~~~~~~~~-~~~~~~~~~~-~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~-~r- 222 (436)
...++++|..+.+ |+.-...+...... .....++..+ +.||+.. ....++.+|..|++ |+.-..... ..
T Consensus 70 ~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~---~~g~v~AlD~~TG~~~W~~~~~~~~~~~~ 146 (488)
T cd00216 70 HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT---FDGRLVALDAETGKQVWKFGNNDQVPPGY 146 (488)
T ss_pred CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec---CCCeEEEEECCCCCEeeeecCCCCcCcce
Confidence 4678899988654 76533222111000 0001134445 7888753 23578999999886 876433221 00
Q ss_pred -cccEEEEeCCEEEEEcCcCCC-CCCccceEEEEeCCCCC--eEeCC--CCc--cCC--------------cceeEEE--
Q 013797 223 -CLFASATCGTFAFVAGGHGMD-GSGVLNSAERYNPETKS--WDSLP--GMR--QRR--------------KLCSGCY-- 278 (436)
Q Consensus 223 -~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~yd~~t~~--W~~~~--~~p--~~r--------------~~~~~~~-- 278 (436)
...+.++.++.+|+....... .......+..+|..|++ |+.-. +.+ .+. ...+.++
T Consensus 147 ~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~ 226 (488)
T cd00216 147 TMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP 226 (488)
T ss_pred EecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC
Confidence 122334556766653221110 00023468899998876 87421 111 110 0112222
Q ss_pred ECCEEEEEeccCC-----------CCCcCCEEEEEECCCC--cEEEcCCCCCCCCCCCCCCCCEEEE---ECCE---EEE
Q 013797 279 MDNKFYVIGGRNE-----------KDKPLTCGEAYDEYAG--TWYHIPDILKDFPAETGKSPPLIAV---VNNE---LYS 339 (436)
Q Consensus 279 ~~g~iyv~gG~~~-----------~~~~~~~v~~yD~~~~--~W~~v~~~~~~~~~~~~r~~~~~~~---~~g~---lyv 339 (436)
.++.+|+-.+... .....+.++++|.+++ .|+.-...+..... .....+.+.. +++. +.+
T Consensus 227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~-~~~s~p~~~~~~~~~g~~~~~V~ 305 (488)
T cd00216 227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY-DGPNQPSLADIKPKDGKPVPAIV 305 (488)
T ss_pred CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc-ccCCCCeEEeccccCCCeeEEEE
Confidence 2567777644210 1113457999999887 58753221100000 0111122221 2332 445
Q ss_pred EecCCCeEEEEECCCCc--EEE
Q 013797 340 LETSSNELRVYLKDSNS--WKN 359 (436)
Q Consensus 340 ~gg~~~~i~~yd~~~~~--W~~ 359 (436)
++...+.++++|.++.+ |+.
T Consensus 306 ~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 306 HAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred EECCCceEEEEECCCCcEeeEe
Confidence 55556789999998864 775
No 122
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.71 E-value=23 Score=36.18 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=58.1
Q ss_pred EEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeE-e--
Q 013797 189 HLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWD-S-- 263 (436)
Q Consensus 189 ~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~-- 263 (436)
.||+.| .+.++|++|+..++|-. |+...-....++.+ -..++.+|+.++ .++.+|+.+.+=. .
T Consensus 147 Dly~~g---sg~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~g-------~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 147 DLYLVG---SGSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTEDG-------VVEFWDPRDKSRVGTLD 214 (703)
T ss_pred cEEEee---cCcceEEEEcccccccc--ccccccccceeeeecCccceEEecccCc-------eEEEecchhhhhheeee
Confidence 366554 23689999999998854 33222222223333 345778887553 4888898876521 1
Q ss_pred ----CCCCccCCc--ceeEEEE-CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCC
Q 013797 264 ----LPGMRQRRK--LCSGCYM-DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPD 314 (436)
Q Consensus 264 ----~~~~p~~r~--~~~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~ 314 (436)
+...|..-. ..++..+ |+-|-+.-|. ....++.||+.+.+=-.+..
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-----s~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-----STGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeec-----cCCcEEEEEcccCCceeecc
Confidence 122222111 1223333 4344443332 23458999998776444443
No 123
>PRK04922 tolB translocation protein TolB; Provisional
Probab=88.70 E-value=28 Score=34.92 Aligned_cols=181 Identities=13% Similarity=0.025 Sum_probs=94.4
Q ss_pred CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEe-CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEE
Q 013797 151 DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCA-GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASAT 229 (436)
Q Consensus 151 ~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~ 229 (436)
...++.+|..+++-..+...+.... . ...+- +..|++.........++++|+.+++-+++......... ....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~----~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~-~~~s 300 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-A----PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTE-PTWA 300 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-C----ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccc-eEEC
Confidence 4578889998887776654432211 1 12233 44555443333346899999999987776543211111 1112
Q ss_pred eCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE-EECC-EEEEEeccCCCCCcCCEEEEEECCC
Q 013797 230 CGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC-YMDN-KFYVIGGRNEKDKPLTCGEAYDEYA 306 (436)
Q Consensus 230 ~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g-~iyv~gG~~~~~~~~~~v~~yD~~~ 306 (436)
-++ +|++.....+ ...++.+|..+++.+.+..- ........ .-+| .|++..+.+ ....++.+|+.+
T Consensus 301 pDG~~l~f~sd~~g-----~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~----~~~~I~v~d~~~ 369 (433)
T PRK04922 301 PDGKSIYFTSDRGG-----RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSG----GQYRIAVMDLST 369 (433)
T ss_pred CCCCEEEEEECCCC-----CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCC----CceeEEEEECCC
Confidence 234 4554432221 24688899988888766321 11221222 2244 455544321 123789999999
Q ss_pred CcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC---CCeEEEEECCCCc
Q 013797 307 GTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS---SNELRVYLKDSNS 356 (436)
Q Consensus 307 ~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~---~~~i~~yd~~~~~ 356 (436)
+....+..-..+ ..+ ...-+|+.+++... ...++.++.....
T Consensus 370 g~~~~Lt~~~~~-------~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 370 GSVRTLTPGSLD-------ESP-SFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CCeEECCCCCCC-------CCc-eECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 888877643211 111 12335544333221 3467888886543
No 124
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=88.54 E-value=17 Score=32.06 Aligned_cols=141 Identities=13% Similarity=0.029 Sum_probs=67.7
Q ss_pred EEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC--eEeC----CCCccCCcceeEEEE--CCEEEEEeccCCCCCcCC
Q 013797 226 ASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS--WDSL----PGMRQRRKLCSGCYM--DNKFYVIGGRNEKDKPLT 297 (436)
Q Consensus 226 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~----~~~p~~r~~~~~~~~--~g~iyv~gG~~~~~~~~~ 297 (436)
++....+++|++-|. .+++++..... -+.+ +.+|.. --++... ++++|++-| +
T Consensus 11 A~~~~~g~~y~FkG~---------~~w~~~~~~~~~~p~~I~~~w~~~p~~--IDAa~~~~~~~~~yfFkg--------~ 71 (194)
T cd00094 11 AVTTLRGELYFFKGR---------YFWRLSPGKPPGSPFLISSFWPSLPSP--VDAAFERPDTGKIYFFKG--------D 71 (194)
T ss_pred eEEEeCCEEEEEeCC---------EEEEEeCCCCCCCCeEhhhhCCCCCCC--ccEEEEECCCCEEEEECC--------C
Confidence 344456889999663 35666654111 1111 112221 1122232 389999966 3
Q ss_pred EEEEEECCCCcEEEcCCCCCCCCCCC-CCCCCEEEEE--CCEEEEEecCCCeEEEEECCCCcEEE-----cc-cCCCccC
Q 013797 298 CGEAYDEYAGTWYHIPDILKDFPAET-GKSPPLIAVV--NNELYSLETSSNELRVYLKDSNSWKN-----LG-LVPVRAD 368 (436)
Q Consensus 298 ~v~~yD~~~~~W~~v~~~~~~~~~~~-~r~~~~~~~~--~g~lyv~gg~~~~i~~yd~~~~~W~~-----v~-~~p~~~~ 368 (436)
..+.||..+....--..+.. ...+. +...-++... ++++|++.| +..|+||...++-.. +. ..+..+
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~-~~~~~~~~~iDAA~~~~~~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p- 147 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISD-LGFPPTVKQIDAALRWPDNGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVP- 147 (194)
T ss_pred EEEEEcCcccccCCCcchhh-cCCCCCCCCccEEEEEcCCCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcC-
Confidence 46888866422211111110 01111 0111222233 579999976 789999976654321 11 011110
Q ss_pred CCCCceEEEEEeCCEEEEEcCCC
Q 013797 369 FNRGWGIAFKSLGNELLVIGASS 391 (436)
Q Consensus 369 ~~~~~~~~~~~~~~~l~v~GG~~ 391 (436)
....+++...++++|+|-|..
T Consensus 148 --~~idaa~~~~~~~~yfF~g~~ 168 (194)
T cd00094 148 --DKVDAAFRWLDGYYYFFKGDQ 168 (194)
T ss_pred --CCcceeEEeCCCcEEEEECCE
Confidence 112234434448999998775
No 125
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.49 E-value=33 Score=37.52 Aligned_cols=139 Identities=10% Similarity=0.146 Sum_probs=70.5
Q ss_pred EEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeE-eCC
Q 013797 189 HLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWD-SLP 265 (436)
Q Consensus 189 ~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~~~ 265 (436)
..++.|+. ...+.+||..+++-...-. .....-.+++.. ++.+++.|+.++ .+.+||..+..-. .+.
T Consensus 546 ~~las~~~--Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg-------~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 546 SQVASSNF--EGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDG-------SVKLWSINQGVSIGTIK 615 (793)
T ss_pred CEEEEEeC--CCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCC-------EEEEEECCCCcEEEEEe
Confidence 34444432 3578889988765322111 111112223332 456777776543 4788888765421 111
Q ss_pred CCccCCcceeEEE--ECCEEEEEeccCCCCCcCCEEEEEECCCCc--EEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEe
Q 013797 266 GMRQRRKLCSGCY--MDNKFYVIGGRNEKDKPLTCGEAYDEYAGT--WYHIPDILKDFPAETGKSPPLIAVVNNELYSLE 341 (436)
Q Consensus 266 ~~p~~r~~~~~~~--~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~--W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~g 341 (436)
.......... -++.+++.|+.+ ..+..||+.+.. ...+.... .....+...++..++.+
T Consensus 616 ---~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h~--------~~V~~v~f~~~~~lvs~ 678 (793)
T PLN00181 616 ---TKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGHS--------KTVSYVRFVDSSTLVSS 678 (793)
T ss_pred ---cCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCCC--------CCEEEEEEeCCCEEEEE
Confidence 1101111112 246777777643 468899987543 11111110 01112333466667777
Q ss_pred cCCCeEEEEECCC
Q 013797 342 TSSNELRVYLKDS 354 (436)
Q Consensus 342 g~~~~i~~yd~~~ 354 (436)
+..+.|.+||...
T Consensus 679 s~D~~ikiWd~~~ 691 (793)
T PLN00181 679 STDNTLKLWDLSM 691 (793)
T ss_pred ECCCEEEEEeCCC
Confidence 7778899999864
No 126
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=88.28 E-value=25 Score=33.78 Aligned_cols=143 Identities=6% Similarity=0.074 Sum_probs=77.7
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEE--EeCCEEEEEcCcCCCCCCccceEEEEeCCCC--CeE
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASA--TCGTFAFVAGGHGMDGSGVLNSAERYNPETK--SWD 262 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~--~W~ 262 (436)
++.+.+.||. .+..++|+..++.|- ..++.......++ .+++.+.+.|+.++ .+.++...++ +|.
T Consensus 75 ~~~l~aTGGg--DD~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG-------~v~v~~~stg~~~~~ 143 (399)
T KOG0296|consen 75 NNNLVATGGG--DDLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSG-------KVLVFKVSTGGEQWK 143 (399)
T ss_pred CCceEEecCC--CceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCc-------cEEEEEcccCceEEE
Confidence 5566777764 356788998888742 2222222233333 35778888888764 2555655544 476
Q ss_pred eCCCCcc--CCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEE
Q 013797 263 SLPGMRQ--RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSL 340 (436)
Q Consensus 263 ~~~~~p~--~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~ 340 (436)
...++.. -...|. .+.|++.|-.+ ..+|+|.+.++.-.++-+-. ..++..+-..-+|+..+.
T Consensus 144 ~~~e~~dieWl~WHp----~a~illAG~~D------GsvWmw~ip~~~~~kv~~Gh------~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 144 LDQEVEDIEWLKWHP----RAHILLAGSTD------GSVWMWQIPSQALCKVMSGH------NSPCTCGEFIPDGKRILT 207 (399)
T ss_pred eecccCceEEEEecc----cccEEEeecCC------CcEEEEECCCcceeeEecCC------CCCcccccccCCCceEEE
Confidence 5422210 001111 23355555432 34788887776333322211 122222223346777777
Q ss_pred ecCCCeEEEEECCCCc
Q 013797 341 ETSSNELRVYLKDSNS 356 (436)
Q Consensus 341 gg~~~~i~~yd~~~~~ 356 (436)
|...+.|.+||+++.+
T Consensus 208 gy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQ 223 (399)
T ss_pred EecCceEEEEecCCCc
Confidence 7778899999999864
No 127
>PRK03629 tolB translocation protein TolB; Provisional
Probab=87.63 E-value=33 Score=34.43 Aligned_cols=149 Identities=10% Similarity=-0.016 Sum_probs=78.1
Q ss_pred CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeC-CEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEE
Q 013797 151 DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAG-THLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASAT 229 (436)
Q Consensus 151 ~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~ 229 (436)
...++.+|..+++-..+...+..... ...+-+ ..|++.........++++|..+++.+++......-. .....
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~-----~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~-~~~wS 295 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGA-----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT-EPTWF 295 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCC-----eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcC-ceEEC
Confidence 45677888877766665544322110 122334 455554332333579999999998887754332111 11111
Q ss_pred eCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCc
Q 013797 230 CGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT 308 (436)
Q Consensus 230 ~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~ 308 (436)
-++ .|+...... ....++.+|+.++.-+.+.... .........-+|+..++.+... ....++.+|+.++.
T Consensus 296 PDG~~I~f~s~~~-----g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~---g~~~I~~~dl~~g~ 366 (429)
T PRK03629 296 PDSQNLAYTSDQA-----GRPQVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFMVMVSSNG---GQQHIAKQDLATGG 366 (429)
T ss_pred CCCCEEEEEeCCC-----CCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEEccC---CCceEEEEECCCCC
Confidence 244 454433221 1246888899887766553211 1111112223555444433222 13468899999999
Q ss_pred EEEcCC
Q 013797 309 WYHIPD 314 (436)
Q Consensus 309 W~~v~~ 314 (436)
++.+..
T Consensus 367 ~~~Lt~ 372 (429)
T PRK03629 367 VQVLTD 372 (429)
T ss_pred eEEeCC
Confidence 888774
No 128
>smart00284 OLF Olfactomedin-like domains.
Probab=87.19 E-value=24 Score=32.51 Aligned_cols=127 Identities=15% Similarity=0.086 Sum_probs=69.7
Q ss_pred CCEEEEEeccCCCCCcCCEEEEEE----CCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC
Q 013797 280 DNKFYVIGGRNEKDKPLTCGEAYD----EYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 280 ~g~iyv~gG~~~~~~~~~~v~~yD----~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~ 355 (436)
++++|++.+... ..+.+..|. ...+.+.+.-.+| .+..|.+.++.+|.||.--.....|.+||+.++
T Consensus 34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp------~~~~GtG~VVYngslYY~~~~s~~iiKydL~t~ 104 (255)
T smart00284 34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLP------HAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTE 104 (255)
T ss_pred CceEEEEccccC---CCcEEEEecCHHHHhccCCceEEECC------CccccccEEEECceEEEEecCCccEEEEECCCC
Confidence 577888876431 234455663 2344444433444 455677889999999998766789999999998
Q ss_pred cEEEcccCCCccCC---CC----CceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCCCCccCcEE
Q 013797 356 SWKNLGLVPVRADF---NR----GWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSDAGELQWRL 416 (436)
Q Consensus 356 ~W~~v~~~p~~~~~---~~----~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W~~ 416 (436)
+=.....+|..... .. ...+-+++-.+-|.++=.... ....+.+=.++|++=.-..+|..
T Consensus 105 ~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~-~~g~ivvSkLnp~tL~ve~tW~T 171 (255)
T smart00284 105 TYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ-NAGKIVISKLNPATLTIENTWIT 171 (255)
T ss_pred cEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC-CCCCEEEEeeCcccceEEEEEEc
Confidence 76544444431100 00 111344455556666632221 11233333445544222347765
No 129
>PLN00181 protein SPA1-RELATED; Provisional
Probab=86.54 E-value=54 Score=35.84 Aligned_cols=144 Identities=12% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCE-EeCCCCCCCCcccEEEEe---CCEEEEEcCcCCCCCCccceEEEEeCCCCC--
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNW-FKGPSMRRPRCLFASATC---GTFAFVAGGHGMDGSGVLNSAERYNPETKS-- 260 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W-~~l~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-- 260 (436)
++.+++.|+. ...+.+||..+.+- ..+. .. ....++.+ ++..++.|+.+ ..+.+||..+..
T Consensus 587 ~~~~L~Sgs~--Dg~v~iWd~~~~~~~~~~~---~~-~~v~~v~~~~~~g~~latgs~d-------g~I~iwD~~~~~~~ 653 (793)
T PLN00181 587 DPTLLASGSD--DGSVKLWSINQGVSIGTIK---TK-ANICCVQFPSESGRSLAFGSAD-------HKVYYYDLRNPKLP 653 (793)
T ss_pred CCCEEEEEcC--CCEEEEEECCCCcEEEEEe---cC-CCeEEEEEeCCCCCEEEEEeCC-------CeEEEEECCCCCcc
Confidence 4566666653 34688899876542 1221 11 11122222 46677777644 258889987643
Q ss_pred eEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC----cEEEcCCCCCCCCCCCCCCCCEEEEECCE
Q 013797 261 WDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG----TWYHIPDILKDFPAETGKSPPLIAVVNNE 336 (436)
Q Consensus 261 W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~----~W~~v~~~~~~~~~~~~r~~~~~~~~~g~ 336 (436)
...+..-.. .-......++..++.++.+ ..+-.||+.+. .|..+..+... ...........++.
T Consensus 654 ~~~~~~h~~--~V~~v~f~~~~~lvs~s~D------~~ikiWd~~~~~~~~~~~~l~~~~gh----~~~i~~v~~s~~~~ 721 (793)
T PLN00181 654 LCTMIGHSK--TVSYVRFVDSSTLVSSSTD------NTLKLWDLSMSISGINETPLHSFMGH----TNVKNFVGLSVSDG 721 (793)
T ss_pred ceEecCCCC--CEEEEEEeCCCEEEEEECC------CEEEEEeCCCCccccCCcceEEEcCC----CCCeeEEEEcCCCC
Confidence 111111000 1112233466666666633 34778887643 23222222100 00000111223567
Q ss_pred EEEEecCCCeEEEEECCCC
Q 013797 337 LYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 337 lyv~gg~~~~i~~yd~~~~ 355 (436)
+++.|+..+.+.+|+....
T Consensus 722 ~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 722 YIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEEeCCCEEEEEECCCC
Confidence 7777777889999997643
No 130
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=86.39 E-value=36 Score=33.57 Aligned_cols=119 Identities=8% Similarity=0.102 Sum_probs=67.1
Q ss_pred cEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE-E-ECCEEEEEeccCCCCCcCCEEEE
Q 013797 225 FASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC-Y-MDNKFYVIGGRNEKDKPLTCGEA 301 (436)
Q Consensus 225 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~-~~g~iyv~gG~~~~~~~~~~v~~ 301 (436)
.+++.+ +|.||..|-.++ .+-+||..... .+...|..-....+. + -||...+.+- + -.+|..
T Consensus 351 ts~~fHpDgLifgtgt~d~-------~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~a-d-----d~~V~l 415 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDG-------VVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAA-D-----DGSVKL 415 (506)
T ss_pred EEeeEcCCceEEeccCCCc-------eEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEe-c-----CCeEEE
Confidence 344444 566766665432 47789998876 555555422222222 2 2454444442 2 234889
Q ss_pred EECCCCcEEEcCCCCCCCCCCCCCCCCEEEEEC--CEEEEEecCCCeEEEEECCCCcEEEcccCCC
Q 013797 302 YDEYAGTWYHIPDILKDFPAETGKSPPLIAVVN--NELYSLETSSNELRVYLKDSNSWKNLGLVPV 365 (436)
Q Consensus 302 yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~--g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~ 365 (436)
||+.+.+ .++.++.+ .. .....+.+| |...+++|..-.|+.|+..+++|+++..++.
T Consensus 416 wDLRKl~--n~kt~~l~----~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 416 WDLRKLK--NFKTIQLD----EK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred EEehhhc--ccceeecc----cc-ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh
Confidence 9998765 33333211 11 122233333 6677777766678888899999999987664
No 131
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.31 E-value=25 Score=31.80 Aligned_cols=135 Identities=11% Similarity=0.048 Sum_probs=77.6
Q ss_pred CeEEEEECCCCCEEeCCC-CCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEE
Q 013797 200 GVIWRYELETNNWFKGPS-MRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCY 278 (436)
Q Consensus 200 ~~v~~ydp~t~~W~~l~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 278 (436)
..+-.|||..+.--+--. .-.... -+..+.++.-+..||-+ +.+.++|..|++=.. .+...-..-.++.
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgD-------k~v~vwDV~TGkv~R--r~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGD-------KAVQVWDVNTGKVDR--RFRGHLAQVNTVR 108 (307)
T ss_pred ceEEeecccccceeeeecCCCceee-eccccccccccccCCCC-------ceEEEEEcccCeeee--ecccccceeeEEE
Confidence 578888888776433211 111111 12233455445555532 358899999875211 0000001112334
Q ss_pred ECCE--EEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCc
Q 013797 279 MDNK--FYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNS 356 (436)
Q Consensus 279 ~~g~--iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~ 356 (436)
+|.. +.+-|+. -..+.++|=.+.....++.+. ..+.+...+.+.+...+.|...+.+..||+..++
T Consensus 109 fNeesSVv~Sgsf------D~s~r~wDCRS~s~ePiQild------ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 109 FNEESSVVASGSF------DSSVRLWDCRSRSFEPIQILD------EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGT 176 (307)
T ss_pred ecCcceEEEeccc------cceeEEEEcccCCCCccchhh------hhcCceeEEEecccEEEeeccCCcEEEEEeecce
Confidence 4443 4555553 346788998888888877765 4555566677788888888778889999987554
No 132
>PRK04043 tolB translocation protein TolB; Provisional
Probab=85.87 E-value=40 Score=33.72 Aligned_cols=190 Identities=6% Similarity=-0.047 Sum_probs=102.4
Q ss_pred CCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeC-CEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEE
Q 013797 150 GDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAG-THLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASA 228 (436)
Q Consensus 150 ~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~ 228 (436)
+..++|.+|..+++=..+...+.... . ...+-+ ..|.+.-.......+|++|..+++++++...+..-....-.
T Consensus 211 ~~~~Iyv~dl~tg~~~~lt~~~g~~~-~----~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 211 RKPTLYKYNLYTGKKEKIASSQGMLV-V----SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFV 285 (419)
T ss_pred CCCEEEEEECCCCcEEEEecCCCcEE-e----eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEEC
Confidence 35789999998887766654322110 0 022333 45555433334468999999999999886544311111111
Q ss_pred EeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCC---CcCCEEEEEECC
Q 013797 229 TCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKD---KPLTCGEAYDEY 305 (436)
Q Consensus 229 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~---~~~~~v~~yD~~ 305 (436)
--+.+|++.....+ ..+++++|..+++.+.+..- ..... ...-+|+..++-...... .....++.+|+.
T Consensus 286 PDG~~I~F~Sdr~g-----~~~Iy~~dl~~g~~~rlt~~--g~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 286 EDDKRIVFVSDRLG-----YPNIFMKKLNSGSVEQVVFH--GKNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CCCCEEEEEECCCC-----CceEEEEECCCCCeEeCccC--CCcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 12446777654322 35799999999888766321 11121 233355543433322111 123578999999
Q ss_pred CCcEEEcCCCCCCCCCCCCCCCCEEEEECCE-EEEEec--CCCeEEEEECCCCcEEEc
Q 013797 306 AGTWYHIPDILKDFPAETGKSPPLIAVVNNE-LYSLET--SSNELRVYLKDSNSWKNL 360 (436)
Q Consensus 306 ~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~-lyv~gg--~~~~i~~yd~~~~~W~~v 360 (436)
++.++.+.....+ ..+. ..-||+ |+.... ....+..++.+.+.=..+
T Consensus 358 ~g~~~~LT~~~~~-------~~p~-~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 358 SDYIRRLTANGVN-------QFPR-FSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCCeEECCCCCCc-------CCeE-ECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 9999888764211 0111 223554 444332 233577777766544433
No 133
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=85.69 E-value=39 Score=33.40 Aligned_cols=147 Identities=12% Similarity=-0.036 Sum_probs=80.8
Q ss_pred CeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeC-CEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe
Q 013797 152 SSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAG-THLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC 230 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~ 230 (436)
..++.+|..+++-..+......... ....-+ ..|++.........++.+|..+++.+.+.......... ...-
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-----~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-----PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-----eEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCE-EECC
Confidence 5788899888766655443321111 122334 45655443334468999999999888775433211111 1112
Q ss_pred CC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE-EECCEEEEEeccCCCCCcCCEEEEEECCCCc
Q 013797 231 GT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC-YMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT 308 (436)
Q Consensus 231 ~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~ 308 (436)
++ +|++.....+ ...++++|..+..++.+.... ....... .-+|+.+++..... ....++.+|+.++.
T Consensus 288 dg~~l~~~s~~~g-----~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~---~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 288 DGKSIAFTSDRGG-----SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREG---GGFNIAVMDLDGGG 357 (417)
T ss_pred CCCEEEEEECCCC-----CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccC---CceEEEEEeCCCCC
Confidence 34 4555433221 236899999888877663211 1111222 23566555554332 23468999999887
Q ss_pred EEEcCC
Q 013797 309 WYHIPD 314 (436)
Q Consensus 309 W~~v~~ 314 (436)
+..+..
T Consensus 358 ~~~l~~ 363 (417)
T TIGR02800 358 ERVLTD 363 (417)
T ss_pred eEEccC
Confidence 776654
No 134
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=85.50 E-value=19 Score=36.74 Aligned_cols=106 Identities=10% Similarity=0.045 Sum_probs=56.1
Q ss_pred CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEEC--CEEEEEeccCCCCCcCCEEEEEECCCCc
Q 013797 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMD--NKFYVIGGRNEKDKPLTCGEAYDEYAGT 308 (436)
Q Consensus 231 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~--g~iyv~gG~~~~~~~~~~v~~yD~~~~~ 308 (436)
.-.||++|. -.++++++++.+.|-. ++...-...-++.++ +.|.++||. ...|+.+|+.+..
T Consensus 145 scDly~~gs--------g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~------~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 145 SCDLYLVGS--------GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTE------DGVVEFWDPRDKS 208 (703)
T ss_pred CccEEEeec--------CcceEEEEcccccccc--ccccccccceeeeecCccceEEeccc------CceEEEecchhhh
Confidence 345777653 2468999999998842 222111111223232 347777773 3467899987764
Q ss_pred EEE-------cCCCCCCCCCCCCCCCCEEEEEC-CEEEEEecCCCeEEEEECCCC
Q 013797 309 WYH-------IPDILKDFPAETGKSPPLIAVVN-NELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 309 W~~-------v~~~~~~~~~~~~r~~~~~~~~~-g~lyv~gg~~~~i~~yd~~~~ 355 (436)
-.. +.+.|... ......++..-+ |--+.+|.+.+.+++||+.+.
T Consensus 209 rv~~l~~~~~v~s~pg~~---~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGD---AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred hheeeecccccCCCcccc---ccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 322 22222111 111222223334 344556767788999998764
No 135
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.35 E-value=60 Score=35.25 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=63.6
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCC--EEeCCCCCCCC-ccc----E------------------EEEeCCEEEEE
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNN--WFKGPSMRRPR-CLF----A------------------SATCGTFAFVA 237 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l~~~p~~r-~~~----~------------------~~~~~~~iyv~ 237 (436)
-+.+++.||+... .+.++.+|..|++ |+.-+..+..- ..+ . .+..+++||+.
T Consensus 190 Plvvgg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~ 266 (764)
T TIGR03074 190 PLKVGDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP 266 (764)
T ss_pred CEEECCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEe
Confidence 4567999998743 4578888888876 87665443210 000 0 11234456553
Q ss_pred cCcCCCCCCccceEEEEeCCCCC--eEe-----------CCCCccCC--cceeEEEECCEEEEEeccCCC----CCcCCE
Q 013797 238 GGHGMDGSGVLNSAERYNPETKS--WDS-----------LPGMRQRR--KLCSGCYMDNKFYVIGGRNEK----DKPLTC 298 (436)
Q Consensus 238 GG~~~~~~~~~~~~~~yd~~t~~--W~~-----------~~~~p~~r--~~~~~~~~~g~iyv~gG~~~~----~~~~~~ 298 (436)
. .+ ..+..+|.+|++ |.. ++..+... ...+.++.++++|+ |+.... ......
T Consensus 267 T-~D-------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 267 T-SD-------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGV 337 (764)
T ss_pred c-CC-------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcE
Confidence 2 11 135666776665 431 22222221 23345677888777 432111 113467
Q ss_pred EEEEECCCC--cEEEc
Q 013797 299 GEAYDEYAG--TWYHI 312 (436)
Q Consensus 299 v~~yD~~~~--~W~~v 312 (436)
+..||.+++ .|+.-
T Consensus 338 I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 338 IRAFDVNTGALVWAWD 353 (764)
T ss_pred EEEEECCCCcEeeEEe
Confidence 899999988 47643
No 136
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=85.31 E-value=43 Score=33.50 Aligned_cols=167 Identities=12% Similarity=0.033 Sum_probs=89.3
Q ss_pred cchhHHHHhhcCccCCeEEEeccCCCeEEEEecCCCCeEeCCC-CCCCCC-----ccCC----CeeeEEeCCEEEEEcee
Q 013797 127 SGELFKIRREIGFREPSVFMLASGDSSWWAFDRHFQTRRKLPE-LPSDPC-----FKLG----DKESLCAGTHLIVSGNE 196 (436)
Q Consensus 127 s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~dp~~~~W~~l~~-~~~~~~-----~~~~----~~~~~~~~~~iyv~GG~ 196 (436)
...|.....++......-.+|.. ..++|.|||.+.+-.++.- +|..+. +... .-.+.+.|+.|-.+.
T Consensus 263 HTnFtdYY~R~~nsDGkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-- 339 (668)
T COG4946 263 HTNFTDYYPRNANSDGKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-- 339 (668)
T ss_pred cCCchhccccccCCCCcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe--
Confidence 33444444333334444445544 4578999999988776632 232211 1000 001223344443332
Q ss_pred cCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeE
Q 013797 197 IEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSG 276 (436)
Q Consensus 197 ~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 276 (436)
....++.++..+---+++.-..-| +.-...++.-.++|-.+++ .+.+||..+..-+.+.. +..+.....
T Consensus 340 --RGkaFi~~~~~~~~iqv~~~~~Vr--Y~r~~~~~e~~vigt~dgD------~l~iyd~~~~e~kr~e~-~lg~I~av~ 408 (668)
T COG4946 340 --RGKAFIMRPWDGYSIQVGKKGGVR--YRRIQVDPEGDVIGTNDGD------KLGIYDKDGGEVKRIEK-DLGNIEAVK 408 (668)
T ss_pred --cCcEEEECCCCCeeEEcCCCCceE--EEEEccCCcceEEeccCCc------eEEEEecCCceEEEeeC-CccceEEEE
Confidence 235777777665444554322222 2222334456777766543 48899999988666532 333334444
Q ss_pred EEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcC
Q 013797 277 CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIP 313 (436)
Q Consensus 277 ~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~ 313 (436)
+.-+||..+++- ..-.++++|++++.=+.+.
T Consensus 409 vs~dGK~~vvaN------dr~el~vididngnv~~id 439 (668)
T COG4946 409 VSPDGKKVVVAN------DRFELWVIDIDNGNVRLID 439 (668)
T ss_pred EcCCCcEEEEEc------CceEEEEEEecCCCeeEec
Confidence 455777666653 3446899999988876654
No 137
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.08 E-value=42 Score=33.26 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=86.5
Q ss_pred CCEEEEEceecCC-CeEEEEECCCC-----CEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC
Q 013797 187 GTHLIVSGNEIEG-GVIWRYELETN-----NWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS 260 (436)
Q Consensus 187 ~~~iyv~GG~~~~-~~v~~ydp~t~-----~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 260 (436)
+..|++.-..... +.++..+.... .|+.+.+-. .-..+.+...++.+|+....+. ....+..++..+..
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~yi~Tn~~a----~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVDHHGDRLYILTNDDA----PNGRLVAVDLADPS 312 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEEEETTEEEEEE-TT-----TT-EEEEEETTSTS
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEEccCCEEEEeeCCCC----CCcEEEEecccccc
Confidence 3445554444444 78999999875 788875421 2222334445889998876332 23467788887765
Q ss_pred ---eE-eCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECC-CCcEEEcCCCCCCCCCCCCCCCCEEEEE--
Q 013797 261 ---WD-SLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEY-AGTWYHIPDILKDFPAETGKSPPLIAVV-- 333 (436)
Q Consensus 261 ---W~-~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~-~~~W~~v~~~~~~~~~~~~r~~~~~~~~-- 333 (436)
|. .+.+-........+...++.|++..-.+ ....+.+||+. +..-..++ +|. .+ .+...
T Consensus 313 ~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~~~~~~~~~~-~p~--------~g-~v~~~~~ 378 (414)
T PF02897_consen 313 PAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLDDGKESREIP-LPE--------AG-SVSGVSG 378 (414)
T ss_dssp GGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT-TEEEEEEE-SSS--------SS-EEEEEES
T ss_pred cccceeEEcCCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECCCCcEEeeec-CCc--------ce-EEeccCC
Confidence 66 4433222223344556788887765333 35678999998 33333333 321 11 11111
Q ss_pred ---CCEEEEE-ecC--CCeEEEEECCCCcEEEcc
Q 013797 334 ---NNELYSL-ETS--SNELRVYLKDSNSWKNLG 361 (436)
Q Consensus 334 ---~g~lyv~-gg~--~~~i~~yd~~~~~W~~v~ 361 (436)
.+.+++. .+. ...++.||+++++-+.+.
T Consensus 379 ~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 379 DFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp -TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 2344443 332 458999999999877653
No 138
>PRK01742 tolB translocation protein TolB; Provisional
Probab=84.85 E-value=45 Score=33.39 Aligned_cols=140 Identities=11% Similarity=-0.018 Sum_probs=69.5
Q ss_pred CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCE-EEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEE
Q 013797 151 DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTH-LIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASAT 229 (436)
Q Consensus 151 ~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~ 229 (436)
...++.+|..++.-..+...+.... . ...+-+|. |++.........+|.+|+.+++.+++...... .......
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~--~---~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNG--A---PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccC--c---eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 3568888887776555544332111 0 12333454 44433223335789999988887776542211 1111112
Q ss_pred eCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCE-EEEEeccCCCCCcCCEEEEEECCCC
Q 013797 230 CGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNK-FYVIGGRNEKDKPLTCGEAYDEYAG 307 (436)
Q Consensus 230 ~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-iyv~gG~~~~~~~~~~v~~yD~~~~ 307 (436)
-++ .|++.....+ ...++.+|..+..-+.+.. ... .....-+|+ |++.++ ..+..+|+.++
T Consensus 301 pDG~~i~f~s~~~g-----~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~--------~~i~~~Dl~~g 363 (429)
T PRK01742 301 PDGQSILFTSDRSG-----SPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING--------DNVVKQDLTSG 363 (429)
T ss_pred CCCCEEEEEECCCC-----CceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC--------CCEEEEECCCC
Confidence 244 4554433221 2357777776554333311 111 111222444 444332 34677999999
Q ss_pred cEEEcC
Q 013797 308 TWYHIP 313 (436)
Q Consensus 308 ~W~~v~ 313 (436)
.+..+.
T Consensus 364 ~~~~lt 369 (429)
T PRK01742 364 STEVLS 369 (429)
T ss_pred CeEEec
Confidence 887765
No 139
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=83.50 E-value=37 Score=31.32 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=88.1
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCCE---EeCCCCCC---------CCcccEEEEeCCEEEEEcCcCCCCCCccce
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNNW---FKGPSMRR---------PRCLFASATCGTFAFVAGGHGMDGSGVLNS 250 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W---~~l~~~p~---------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 250 (436)
.++.+|.+|.--. ....+.+||+.+++- ..||..-. +-.....++-++-|+|+-....... .-.
T Consensus 74 ~vVYngslYY~~~--~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g--~iv 149 (250)
T PF02191_consen 74 HVVYNGSLYYNKY--NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG--NIV 149 (250)
T ss_pred eEEECCcEEEEec--CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC--cEE
Confidence 4667777776532 457899999999974 45543211 1111233444566777765543321 123
Q ss_pred EEEEeCCC----CCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCC
Q 013797 251 AERYNPET----KSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKS 326 (436)
Q Consensus 251 ~~~yd~~t----~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~ 326 (436)
+-..|+.+ .+|..- .+. +....+..+=|.||++....... ..-.++||+.+++=..+. ++. +.+..
T Consensus 150 vskld~~tL~v~~tw~T~--~~k-~~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~-i~f----~~~~~ 219 (250)
T PF02191_consen 150 VSKLDPETLSVEQTWNTS--YPK-RSAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVS-IPF----PNPYG 219 (250)
T ss_pred EEeeCcccCceEEEEEec--cCc-hhhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceecee-eee----ccccC
Confidence 45667765 357642 222 22334667789999998755432 445689999988755433 321 12222
Q ss_pred CCEEEEE---CCEEEEEecCCCeEEEEECC
Q 013797 327 PPLIAVV---NNELYSLETSSNELRVYLKD 353 (436)
Q Consensus 327 ~~~~~~~---~g~lyv~gg~~~~i~~yd~~ 353 (436)
...++.. +.+||+... +.+..|+..
T Consensus 220 ~~~~l~YNP~dk~LY~wd~--G~~v~Y~v~ 247 (250)
T PF02191_consen 220 NISMLSYNPRDKKLYAWDN--GYQVTYDVR 247 (250)
T ss_pred ceEeeeECCCCCeEEEEEC--CeEEEEEEE
Confidence 3334433 568888863 567777754
No 140
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.35 E-value=39 Score=31.47 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=98.6
Q ss_pred EEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCC-CCCCCcccEEEEe--
Q 013797 154 WWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPS-MRRPRCLFASATC-- 230 (436)
Q Consensus 154 ~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~-~p~~r~~~~~~~~-- 230 (436)
+=.+||.+++-...|.-.....+. .++--++..++..+ ...+.++|+.|..-++.+- ...+-.+.-..++
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phg----iv~gpdg~~Witd~---~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~ 157 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHG----IVVGPDGSAWITDT---GLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDP 157 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCce----EEECCCCCeeEecC---cceeEEecCcccceEEeecccccCCCcccceeeCC
Confidence 336788887766554222222221 12233556666532 2378899998887766542 2222233334445
Q ss_pred CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeE-EEECCEEEEEeccCCCCCcCCEEEEEECCCCcE
Q 013797 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSG-CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTW 309 (436)
Q Consensus 231 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W 309 (436)
.+.+++.|...-.+ ++||.++.-+..+. |..-.-... +.-+|.+|+..- .-+-+...|+.+..=
T Consensus 158 ~G~lWFt~q~G~yG--------rLdPa~~~i~vfpa-PqG~gpyGi~atpdGsvwyasl------agnaiaridp~~~~a 222 (353)
T COG4257 158 WGNLWFTGQIGAYG--------RLDPARNVISVFPA-PQGGGPYGICATPDGSVWYASL------AGNAIARIDPFAGHA 222 (353)
T ss_pred CccEEEeeccccce--------ecCcccCceeeecc-CCCCCCcceEECCCCcEEEEec------cccceEEcccccCCc
Confidence 35677666432221 46777766554433 222222222 335888887642 224466778777744
Q ss_pred EEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEcccCCC
Q 013797 310 YHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNSWKNLGLVPV 365 (436)
Q Consensus 310 ~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~ 365 (436)
..++. |.+... ..|. .-+--.|++++..-....+++||+.+..|.+-+ +|.
T Consensus 223 ev~p~-P~~~~~-gsRr--iwsdpig~~wittwg~g~l~rfdPs~~sW~eyp-LPg 273 (353)
T COG4257 223 EVVPQ-PNALKA-GSRR--IWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP-LPG 273 (353)
T ss_pred ceecC-CCcccc-cccc--cccCccCcEEEeccCCceeeEeCcccccceeee-CCC
Confidence 44432 211111 1111 012234788887655678999999999999974 443
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=82.43 E-value=37 Score=34.10 Aligned_cols=89 Identities=13% Similarity=-0.000 Sum_probs=48.8
Q ss_pred eEEEEeCCCCC----eEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCC
Q 013797 250 SAERYNPETKS----WDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGK 325 (436)
Q Consensus 250 ~~~~yd~~t~~----W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r 325 (436)
.+..||....+ |.+....|.. +...+-.+.+|++--|++ ..+..||....+=+. .+-.+ .|.
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~~--gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~--~l~y~----~Pl 253 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPCR--GICFSPSNEALLVSVGYD------KKINIYDIRSQASTD--RLTYS----HPL 253 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCcC--cceecCCccceEEEeccc------ceEEEeecccccccc--eeeec----CCc
Confidence 36667765443 4444332321 222233477788877744 567899987554222 11111 110
Q ss_pred CCCEEE-EECCEEEEEecCCCeEEEEECCC
Q 013797 326 SPPLIA-VVNNELYSLETSSNELRVYLKDS 354 (436)
Q Consensus 326 ~~~~~~-~~~g~lyv~gg~~~~i~~yd~~~ 354 (436)
.+++ .-+|.+++.|...+.|+.||+..
T Consensus 254 --stvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 254 --STVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred --ceeeecCCceEEEeecCCceEEEEeccc
Confidence 1122 23567778887788999999875
No 142
>PRK10115 protease 2; Provisional
Probab=81.82 E-value=79 Score=33.96 Aligned_cols=158 Identities=10% Similarity=-0.018 Sum_probs=82.6
Q ss_pred CCEEEEEceecCCCeEEEEEC--CCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCC-CCCeEe
Q 013797 187 GTHLIVSGNEIEGGVIWRYEL--ETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPE-TKSWDS 263 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp--~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-t~~W~~ 263 (436)
+..+++.......+.++.++. .+..|..+-+.+.. ..+.....++.+|+.--.+.. ...+...+.. .+.|+.
T Consensus 234 ~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~~----~~~l~~~~~~~~~~~~~ 308 (686)
T PRK10115 234 KHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHGK----NFGLYRTRVRDEQQWEE 308 (686)
T ss_pred CCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCCC----CceEEEecCCCcccCeE
Confidence 334443333334467888873 33444333222222 112333446788888644322 2346666766 578988
Q ss_pred CCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcC-CCCCCCCCCCCCCCCEEEE----E-CCEE
Q 013797 264 LPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIP-DILKDFPAETGKSPPLIAV----V-NNEL 337 (436)
Q Consensus 264 ~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~-~~~~~~~~~~~r~~~~~~~----~-~g~l 337 (436)
+-+......--.....++.|++..-.+ ....++++|..++....+. +.+. .. .... . ++.+
T Consensus 309 l~~~~~~~~i~~~~~~~~~l~~~~~~~----g~~~l~~~~~~~~~~~~l~~~~~~--------~~-~~~~~~~~~~~~~~ 375 (686)
T PRK10115 309 LIPPRENIMLEGFTLFTDWLVVEERQR----GLTSLRQINRKTREVIGIAFDDPA--------YV-TWIAYNPEPETSRL 375 (686)
T ss_pred EECCCCCCEEEEEEEECCEEEEEEEeC----CEEEEEEEcCCCCceEEecCCCCc--------eE-eeecccCCCCCceE
Confidence 744322222233445577777665333 2445788887766655554 2221 11 1111 1 2344
Q ss_pred EEEec---CCCeEEEEECCCCcEEEccc
Q 013797 338 YSLET---SSNELRVYLKDSNSWKNLGL 362 (436)
Q Consensus 338 yv~gg---~~~~i~~yd~~~~~W~~v~~ 362 (436)
++.-. ....++.||+.+++|+.+..
T Consensus 376 ~~~~ss~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 376 RYGYSSMTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred EEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 44332 25689999999999988764
No 143
>PRK01742 tolB translocation protein TolB; Provisional
Probab=81.68 E-value=60 Score=32.49 Aligned_cols=140 Identities=9% Similarity=-0.063 Sum_probs=70.7
Q ss_pred CCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE
Q 013797 199 GGVIWRYELETNNWFKGPSMRRPRCLFASATCGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC 277 (436)
Q Consensus 199 ~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 277 (436)
...++++|..+++-+.+...+..-. .....-++ +|++....++ ..+++.+|..++..+.+..-... ......
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g-----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~w 299 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDG-----VLNIYVMGANGGTPSQLTSGAGN-NTEPSW 299 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCC-----cEEEEEEECCCCCeEeeccCCCC-cCCEEE
Confidence 4579999999887766655432111 11111244 4544432222 23588889988877665332111 111122
Q ss_pred EECCE-EEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEEEecCCCeEEEEECCCC
Q 013797 278 YMDNK-FYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN-ELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 278 ~~~g~-iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~gg~~~~i~~yd~~~~ 355 (436)
.-+|+ |+......+ ...++.+|..++.-..+.. . . .... ..-+| .|++.++ ..++.+|..+.
T Consensus 300 SpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~-~-------~-~~~~-~SpDG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 300 SPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG-R-------G-YSAQ-ISADGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred CCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC-C-------C-CCcc-CCCCCCEEEEEcC--CCEEEEECCCC
Confidence 23555 444432221 2356777766554333311 0 0 1111 12244 4444433 56888999998
Q ss_pred cEEEcc
Q 013797 356 SWKNLG 361 (436)
Q Consensus 356 ~W~~v~ 361 (436)
+++.+.
T Consensus 364 ~~~~lt 369 (429)
T PRK01742 364 STEVLS 369 (429)
T ss_pred CeEEec
Confidence 888764
No 144
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.35 E-value=43 Score=30.56 Aligned_cols=102 Identities=15% Similarity=0.329 Sum_probs=54.9
Q ss_pred EEEEEcCcCCCCCCccceEEEEeCCCCCeEeC----------------CCCccCCcceeEEEECCEEEEEeccCCCCCcC
Q 013797 233 FAFVAGGHGMDGSGVLNSAERYNPETKSWDSL----------------PGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPL 296 (436)
Q Consensus 233 ~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~----------------~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~ 296 (436)
+-++.||.+. +-.++.||.. +|..- |....++...+.+..++++++.
T Consensus 176 krlvSgGcDn-----~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw---------- 238 (299)
T KOG1332|consen 176 KRLVSGGCDN-----LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW---------- 238 (299)
T ss_pred ceeeccCCcc-----ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE----------
Confidence 4578888763 3346666553 67532 2222344444445555555443
Q ss_pred CEEEEEECCCCcEEEc--CCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC-cEEEccc
Q 013797 297 TCGEAYDEYAGTWYHI--PDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSN-SWKNLGL 362 (436)
Q Consensus 297 ~~v~~yD~~~~~W~~v--~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~-~W~~v~~ 362 (436)
.-+.+.+.|..- .+.| ...+.. .-.+-|.++.+++..+.+..|-...+ +|++++.
T Consensus 239 ----t~~~e~e~wk~tll~~f~------~~~w~v-SWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 ----TKDEEYEPWKKTLLEEFP------DVVWRV-SWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ----EecCccCcccccccccCC------cceEEE-EEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 334455677542 2333 221211 22344666666665788888877654 9999864
No 145
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.90 E-value=45 Score=30.46 Aligned_cols=55 Identities=16% Similarity=0.333 Sum_probs=29.6
Q ss_pred ECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCCCCccCcEEee
Q 013797 351 LKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSDAGELQWRLLE 418 (436)
Q Consensus 351 d~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W~~l~ 418 (436)
+.+.++|+.-- +... +...+.+.....|+.|-|-||.+ .+.+| .+. ...+|.++.
T Consensus 241 ~~e~e~wk~tl-l~~f--~~~~w~vSWS~sGn~LaVs~GdN-----kvtlw--ke~---~~Gkw~~v~ 295 (299)
T KOG1332|consen 241 DEEYEPWKKTL-LEEF--PDVVWRVSWSLSGNILAVSGGDN-----KVTLW--KEN---VDGKWEEVG 295 (299)
T ss_pred cCccCcccccc-cccC--CcceEEEEEeccccEEEEecCCc-----EEEEE--EeC---CCCcEEEcc
Confidence 55567888642 1111 12223344445566666666664 45566 332 335899887
No 146
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=80.75 E-value=53 Score=31.24 Aligned_cols=195 Identities=17% Similarity=0.311 Sum_probs=87.5
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCCEEeCC-CCCCCCcccEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCCC
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGP-SMRRPRCLFASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETKS 260 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~-~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 260 (436)
+...++..|++|.. ..++.-.=.-.+|++++ +.+.|...+.+..+ ++.+++++... .+++=.=.-.+
T Consensus 67 I~f~~~~g~ivG~~---g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G--------~iy~T~DgG~t 135 (302)
T PF14870_consen 67 ISFDGNEGWIVGEP---GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG--------AIYRTTDGGKT 135 (302)
T ss_dssp EEEETTEEEEEEET---TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEESSTTSS
T ss_pred EEecCCceEEEcCC---ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC--------cEEEeCCCCCC
Confidence 44567888888642 23444433456799986 23344444444444 55676665321 24443334558
Q ss_pred eEeCCCCccCCcceeEE-EECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEE-CCEEE
Q 013797 261 WDSLPGMRQRRKLCSGC-YMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVV-NNELY 338 (436)
Q Consensus 261 W~~~~~~p~~r~~~~~~-~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~-~g~ly 338 (436)
|+.+..-...- ...+. .-+|++++++.. -+-....|+-...|....... .|.-..+... ++.|+
T Consensus 136 W~~~~~~~~gs-~~~~~r~~dG~~vavs~~------G~~~~s~~~G~~~w~~~~r~~-------~~riq~~gf~~~~~lw 201 (302)
T PF14870_consen 136 WQAVVSETSGS-INDITRSSDGRYVAVSSR------GNFYSSWDPGQTTWQPHNRNS-------SRRIQSMGFSPDGNLW 201 (302)
T ss_dssp EEEEE-S-----EEEEEE-TTS-EEEEETT------SSEEEEE-TT-SS-EEEE--S-------SS-EEEEEE-TTS-EE
T ss_pred eeEcccCCcce-eEeEEECCCCcEEEEECc------ccEEEEecCCCccceEEccCc-------cceehhceecCCCCEE
Confidence 98764322221 12222 336676666632 223457788888998876542 3333334333 56888
Q ss_pred EEecCCCeEEEEE--CCCCcEEEcccCCCccCCCCCce-EEEEE-eCCEEEEEcCCCCCCCCcEEEEeecCCCCCCccCc
Q 013797 339 SLETSSNELRVYL--KDSNSWKNLGLVPVRADFNRGWG-IAFKS-LGNELLVIGASSTSSHESMAIYTCCPSSDAGELQW 414 (436)
Q Consensus 339 v~gg~~~~i~~yd--~~~~~W~~v~~~p~~~~~~~~~~-~~~~~-~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W 414 (436)
++. .-+.+..=+ -...+|.+-. .|. ...+++ +.++. -.+.+++.||... -.++ ..+-.+|
T Consensus 202 ~~~-~Gg~~~~s~~~~~~~~w~~~~-~~~---~~~~~~~ld~a~~~~~~~wa~gg~G~------l~~S-----~DgGktW 265 (302)
T PF14870_consen 202 MLA-RGGQIQFSDDPDDGETWSEPI-IPI---KTNGYGILDLAYRPPNEIWAVGGSGT------LLVS-----TDGGKTW 265 (302)
T ss_dssp EEE-TTTEEEEEE-TTEEEEE---B--TT---SS--S-EEEEEESSSS-EEEEESTT-------EEEE-----SSTTSS-
T ss_pred EEe-CCcEEEEccCCCCcccccccc-CCc---ccCceeeEEEEecCCCCEEEEeCCcc------EEEe-----CCCCccc
Confidence 875 334555555 3456788831 232 123343 22223 3578999998863 1232 2345589
Q ss_pred EEee
Q 013797 415 RLLE 418 (436)
Q Consensus 415 ~~l~ 418 (436)
.+.+
T Consensus 266 ~~~~ 269 (302)
T PF14870_consen 266 QKDR 269 (302)
T ss_dssp EE-G
T ss_pred eECc
Confidence 9886
No 147
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=80.47 E-value=48 Score=30.53 Aligned_cols=198 Identities=18% Similarity=0.255 Sum_probs=93.4
Q ss_pred eEEeCCEEEE--EceecCC----CeEEEEECCCC-CEEe---CCCC----CCC-CcccEEEEeCCEEEEEcCcCCCCCCc
Q 013797 183 SLCAGTHLIV--SGNEIEG----GVIWRYELETN-NWFK---GPSM----RRP-RCLFASATCGTFAFVAGGHGMDGSGV 247 (436)
Q Consensus 183 ~~~~~~~iyv--~GG~~~~----~~v~~ydp~t~-~W~~---l~~~----p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~ 247 (436)
+.+.++-||. .+|...+ ...|+-.-..+ +|.. +.++ |.- -..+++.++++++|.+=-...-....
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~k 100 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNK 100 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhh
Confidence 4567888884 4443322 34455554443 4754 2222 211 12346677899999875432221223
Q ss_pred cceEEEEe---CCCCCeEe--CCCCcc-------CCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCC-----C-cE
Q 013797 248 LNSAERYN---PETKSWDS--LPGMRQ-------RRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYA-----G-TW 309 (436)
Q Consensus 248 ~~~~~~yd---~~t~~W~~--~~~~p~-------~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~-----~-~W 309 (436)
+...+.|| ...+.|+. ++..+. ....|+.+.+++.=|.+|-.++.-....-...|=... . .=
T Consensus 101 m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vr 180 (367)
T PF12217_consen 101 MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVR 180 (367)
T ss_dssp EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EE
T ss_pred hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceee
Confidence 44556666 46778975 344443 2235677888888889987766542222223332110 1 11
Q ss_pred EEcCCCCCCCCCCCCCCCCEEEEECCEEEEEe-cC----C-CeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCE
Q 013797 310 YHIPDILKDFPAETGKSPPLIAVVNNELYSLE-TS----S-NELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNE 383 (436)
Q Consensus 310 ~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~g-g~----~-~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~ 383 (436)
+.++.-- ...-+-+++-..+|.||+.- |. . ..+.+-+.....|..+. +|... ....+-++..|+.
T Consensus 181 r~i~sey-----~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr-fp~nv---HhtnlPFakvgD~ 251 (367)
T PF12217_consen 181 RIIPSEY-----ERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR-FPNNV---HHTNLPFAKVGDV 251 (367)
T ss_dssp EE--GGG------TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--TT------SS---EEEETTE
T ss_pred eechhhh-----ccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc-ccccc---cccCCCceeeCCE
Confidence 2222211 01223345567899999984 21 1 25677777778899884 34321 1222445588999
Q ss_pred EEEEcC
Q 013797 384 LLVIGA 389 (436)
Q Consensus 384 l~v~GG 389 (436)
||+||.
T Consensus 252 l~mFgs 257 (367)
T PF12217_consen 252 LYMFGS 257 (367)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999975
No 148
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=79.87 E-value=37 Score=28.87 Aligned_cols=85 Identities=11% Similarity=-0.066 Sum_probs=50.1
Q ss_pred EEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCe-EeCCCCccCC---cceeE-EEECCEEEEEeccCCCCCcCCEEEEE
Q 013797 228 ATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW-DSLPGMRQRR---KLCSG-CYMDNKFYVIGGRNEKDKPLTCGEAY 302 (436)
Q Consensus 228 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~r---~~~~~-~~~~g~iyv~gG~~~~~~~~~~v~~y 302 (436)
+.++|.+|.++...... ....+..||..+.+. +.++.++... ..... ++.+++|.++--.... ..-.||+.
T Consensus 2 V~vnG~~hW~~~~~~~~--~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~--~~~~IWvm 77 (164)
T PF07734_consen 2 VFVNGALHWLAYDENND--EKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDET--SKIEIWVM 77 (164)
T ss_pred EEECCEEEeeEEecCCC--CceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCC--ccEEEEEE
Confidence 46789999998765432 122689999999999 5554322222 12233 2337788877432211 22456665
Q ss_pred E---CCCCcEEEcCCCC
Q 013797 303 D---EYAGTWYHIPDIL 316 (436)
Q Consensus 303 D---~~~~~W~~v~~~~ 316 (436)
+ ....+|+++-.+.
T Consensus 78 ~~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 78 KKYGYGKESWTKLFTID 94 (164)
T ss_pred eeeccCcceEEEEEEEe
Confidence 5 3477999975443
No 149
>PTZ00420 coronin; Provisional
Probab=79.32 E-value=86 Score=32.79 Aligned_cols=150 Identities=13% Similarity=0.150 Sum_probs=74.1
Q ss_pred CEEEEEceecCCCeEEEEECCCCCE-EeCCCCCCCCcccEEEE-eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCC
Q 013797 188 THLIVSGNEIEGGVIWRYELETNNW-FKGPSMRRPRCLFASAT-CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLP 265 (436)
Q Consensus 188 ~~iyv~GG~~~~~~v~~ydp~t~~W-~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~ 265 (436)
..+++.||. ...+.+||..+.+= ..+. .+....++.. .++.+++.++.+ ..+.+||+.+++=. .
T Consensus 138 ~~iLaSgS~--DgtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~D-------~~IrIwD~Rsg~~i--~ 203 (568)
T PTZ00420 138 YYIMCSSGF--DSFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCVG-------KHMHIIDPRKQEIA--S 203 (568)
T ss_pred CeEEEEEeC--CCeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEecC-------CEEEEEECCCCcEE--E
Confidence 345555543 35788999987752 1121 1111122222 266777766533 35889999876421 1
Q ss_pred CCcc--CCcceeEEE-----ECCEEEEEeccCCCCCcCCEEEEEECCC-CcEEEcCCCCCCCCCCCCCCCCEEEE---EC
Q 013797 266 GMRQ--RRKLCSGCY-----MDNKFYVIGGRNEKDKPLTCGEAYDEYA-GTWYHIPDILKDFPAETGKSPPLIAV---VN 334 (436)
Q Consensus 266 ~~p~--~r~~~~~~~-----~~g~iyv~gG~~~~~~~~~~v~~yD~~~-~~W~~v~~~~~~~~~~~~r~~~~~~~---~~ 334 (436)
.+.. .......+. -++...+.+|.+.. ....+..||+.+ ..-.....+. ...+..+.. ..
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~~~ld-------~~~~~L~p~~D~~t 274 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVTMSID-------NASAPLIPHYDEST 274 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEEEEec-------CCccceEEeeeCCC
Confidence 1111 100111111 24455555565432 234688999874 2211111111 001111112 24
Q ss_pred CEEEEEecCCCeEEEEECCCCcEEEc
Q 013797 335 NELYSLETSSNELRVYLKDSNSWKNL 360 (436)
Q Consensus 335 g~lyv~gg~~~~i~~yd~~~~~W~~v 360 (436)
|.+|+.|...+.|..|+...+.-..+
T Consensus 275 g~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCEEEEEECCCeEEEEEccCCcEEee
Confidence 78898887778899999877654444
No 150
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=79.05 E-value=74 Score=31.91 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=83.9
Q ss_pred EEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCC--CCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCe
Q 013797 184 LCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMR--RPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW 261 (436)
Q Consensus 184 ~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 261 (436)
+.+++.||.+.-...-..++.-|..-+--++-..+. .|| .+..+|+-.|+.- --+++.|||.+++-
T Consensus 232 mIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R----~~nsDGkrIvFq~--------~GdIylydP~td~l 299 (668)
T COG4946 232 MIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPR----NANSDGKRIVFQN--------AGDIYLYDPETDSL 299 (668)
T ss_pred eEEcceEEEEecccCccceEEeccCCchhhhcCCchhcccc----ccCCCCcEEEEec--------CCcEEEeCCCcCcc
Confidence 567889998854433456777676655555544432 122 2233555445421 12589999999888
Q ss_pred EeCC-CCccCCc---------------------ceeEEEECCEEEEEeccCC--------------------CC-----C
Q 013797 262 DSLP-GMRQRRK---------------------LCSGCYMDNKFYVIGGRNE--------------------KD-----K 294 (436)
Q Consensus 262 ~~~~-~~p~~r~---------------------~~~~~~~~g~iyv~gG~~~--------------------~~-----~ 294 (436)
+++. .+|..|. ..-+.+..|+.+++--..+ .+ .
T Consensus 300 ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~ 379 (668)
T COG4946 300 EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTN 379 (668)
T ss_pred eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEecc
Confidence 7662 2232210 0112333455444421110 00 1
Q ss_pred cCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEc
Q 013797 295 PLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNSWKNL 360 (436)
Q Consensus 295 ~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~W~~v 360 (436)
.-..+.+||..+..-..+..-. ++-....+.-+|+-.+++....++|++|++++.=+.+
T Consensus 380 dgD~l~iyd~~~~e~kr~e~~l-------g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 380 DGDKLGIYDKDGGEVKRIEKDL-------GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred CCceEEEEecCCceEEEeeCCc-------cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 2246778888888766554322 1111112233567666666667888888888765555
No 151
>PRK13684 Ycf48-like protein; Provisional
Probab=77.36 E-value=72 Score=30.81 Aligned_cols=149 Identities=9% Similarity=0.097 Sum_probs=69.3
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCC-CCCCCc-ccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCC--CCeE
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPS-MRRPRC-LFASATCGTFAFVAGGHGMDGSGVLNSAERYNPET--KSWD 262 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~-~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t--~~W~ 262 (436)
.+..|++|-. ..+++=+=.=.+|++... ++.... ..++...++..|++|... .+|-... .+|+
T Consensus 56 ~~~g~avG~~---G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~g----------~i~~S~DgG~tW~ 122 (334)
T PRK13684 56 PNHGWLVGSN---RTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQPS----------LLLHTTDGGKNWT 122 (334)
T ss_pred CCcEEEEECC---CEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCCc----------eEEEECCCCCCCe
Confidence 4566666631 233332223357988753 322221 222323345566665321 1233333 4899
Q ss_pred eCCCC-ccCCcceeEEEE-CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEE
Q 013797 263 SLPGM-RQRRKLCSGCYM-DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSL 340 (436)
Q Consensus 263 ~~~~~-p~~r~~~~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~ 340 (436)
.+... ..+........+ ++.+|+.|. ...++.=+-.-.+|+.+..... . ....+....+..+++
T Consensus 123 ~~~~~~~~~~~~~~i~~~~~~~~~~~g~-------~G~i~~S~DgG~tW~~~~~~~~------g-~~~~i~~~~~g~~v~ 188 (334)
T PRK13684 123 RIPLSEKLPGSPYLITALGPGTAEMATN-------VGAIYRTTDGGKNWEALVEDAA------G-VVRNLRRSPDGKYVA 188 (334)
T ss_pred EccCCcCCCCCceEEEEECCCcceeeec-------cceEEEECCCCCCceeCcCCCc------c-eEEEEEECCCCeEEE
Confidence 88532 111122223333 344666653 2234444445579998875431 1 222333334444444
Q ss_pred ecCCCeEEEE-ECCCCcEEEccc
Q 013797 341 ETSSNELRVY-LKDSNSWKNLGL 362 (436)
Q Consensus 341 gg~~~~i~~y-d~~~~~W~~v~~ 362 (436)
.+..+.++.- |....+|+.+..
T Consensus 189 ~g~~G~i~~s~~~gg~tW~~~~~ 211 (334)
T PRK13684 189 VSSRGNFYSTWEPGQTAWTPHQR 211 (334)
T ss_pred EeCCceEEEEcCCCCCeEEEeeC
Confidence 4445566654 445568998853
No 152
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=77.22 E-value=57 Score=29.63 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=77.9
Q ss_pred CeEEEEECCCCCEE-eCCCCCCCCcccEEEEeC--CEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeE
Q 013797 200 GVIWRYELETNNWF-KGPSMRRPRCLFASATCG--TFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSG 276 (436)
Q Consensus 200 ~~v~~ydp~t~~W~-~l~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 276 (436)
..+.+||..|++-. +..- .-.....+-++ ..+.+.|+++ .++..+|..+++-+.+.-+...+.+-..
T Consensus 81 k~v~vwDV~TGkv~Rr~rg---H~aqVNtV~fNeesSVv~SgsfD-------~s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRG---HLAQVNTVRFNEESSVVASGSFD-------SSVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred ceEEEEEcccCeeeeeccc---ccceeeEEEecCcceEEEecccc-------ceeEEEEcccCCCCccchhhhhcCceeE
Confidence 57899999998732 2211 00111223343 3466666654 3588999999998888777778877777
Q ss_pred EEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEE-EECCEEEEEecCCCeEEEEECCCC
Q 013797 277 CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIA-VVNNELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 277 ~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~~~~i~~yd~~~~ 355 (436)
+.+.+...+.|..++ .+-.||+..++-..- -+. .| -.++. .-++.-.+++.-...+...|.+|+
T Consensus 151 i~v~~heIvaGS~DG------tvRtydiR~G~l~sD-y~g------~p--it~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 151 IDVAEHEIVAGSVDG------TVRTYDIRKGTLSSD-YFG------HP--ITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred EEecccEEEeeccCC------cEEEEEeecceeehh-hcC------Cc--ceeEEecCCCCEEEEeeccceeeecccchh
Confidence 888888777775443 467899887753210 111 00 01111 124555555544456777787775
Q ss_pred c
Q 013797 356 S 356 (436)
Q Consensus 356 ~ 356 (436)
+
T Consensus 216 k 216 (307)
T KOG0316|consen 216 K 216 (307)
T ss_pred H
Confidence 4
No 153
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=75.79 E-value=79 Score=30.52 Aligned_cols=102 Identities=11% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCc--ceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC-
Q 013797 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRK--LCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG- 307 (436)
Q Consensus 231 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~- 307 (436)
+..+.+.||-+. ..++++..++.|-- .++-... ......++|.+.+.|+..+ .+.+++..++
T Consensus 75 ~~~l~aTGGgDD-------~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG------~v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGDD-------LAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG------KVLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCCc-------eEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc------cEEEEEcccCc
Confidence 556777777543 36788888887532 1221111 2334456888888888554 4566766555
Q ss_pred -cEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC
Q 013797 308 -TWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 308 -~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~ 355 (436)
+|.....+.. .- --+++ -.+.+++.|...+.+|+|.+.++
T Consensus 140 ~~~~~~~e~~d-ie--Wl~WH-----p~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 140 EQWKLDQEVED-IE--WLKWH-----PRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred eEEEeecccCc-eE--EEEec-----ccccEEEeecCCCcEEEEECCCc
Confidence 6765433321 00 00011 13578888888899999998875
No 154
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.73 E-value=89 Score=31.07 Aligned_cols=118 Identities=14% Similarity=0.042 Sum_probs=58.5
Q ss_pred eCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCc-----EEEcCCCCCCCCCCCCCCCC-
Q 013797 255 NPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT-----WYHIPDILKDFPAETGKSPP- 328 (436)
Q Consensus 255 d~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~-----W~~v~~~~~~~~~~~~r~~~- 328 (436)
|.....|+.+......+........++.++++|.. ..+..-+..... |.++.... .+...
T Consensus 266 d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~-------G~l~~S~d~G~~~~~~~f~~~~~~~-------~~~~l~ 331 (398)
T PLN00033 266 EPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG-------GGLYVSKGTGLTEEDFDFEEADIKS-------RGFGIL 331 (398)
T ss_pred CCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC-------ceEEEecCCCCcccccceeecccCC-------CCcceE
Confidence 33334489885433333222223457888887632 123333333333 44433211 11222
Q ss_pred EEEEE-CCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCC
Q 013797 329 LIAVV-NNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGAS 390 (436)
Q Consensus 329 ~~~~~-~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~ 390 (436)
.+... ++.++++|. .+.+.+-....++|+++....... ...+.+. ...+++.|+.|..
T Consensus 332 ~v~~~~d~~~~a~G~-~G~v~~s~D~G~tW~~~~~~~~~~--~~ly~v~-f~~~~~g~~~G~~ 390 (398)
T PLN00033 332 DVGYRSKKEAWAAGG-SGILLRSTDGGKSWKRDKGADNIA--ANLYSVK-FFDDKKGFVLGND 390 (398)
T ss_pred EEEEcCCCcEEEEEC-CCcEEEeCCCCcceeEccccCCCC--cceeEEE-EcCCCceEEEeCC
Confidence 22222 568888875 456777677778999985322110 1111222 2455788888754
No 155
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=73.99 E-value=68 Score=30.60 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=63.8
Q ss_pred ccCCcc-eeEEEECCEE-EEE--eccCCCC----CcCCEEEEEECCCCcEEEc-CCCCCCCCCCCCCCCCEEEEECCEEE
Q 013797 268 RQRRKL-CSGCYMDNKF-YVI--GGRNEKD----KPLTCGEAYDEYAGTWYHI-PDILKDFPAETGKSPPLIAVVNNELY 338 (436)
Q Consensus 268 p~~r~~-~~~~~~~g~i-yv~--gG~~~~~----~~~~~v~~yD~~~~~W~~v-~~~~~~~~~~~~r~~~~~~~~~g~ly 338 (436)
|..|.. -+.+..+|+. ||. +-.+..+ ...+...+.|..+++=-.- -.||. +|| -.+|+||
T Consensus 148 ~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPh-----SPR------WhdgrLw 216 (335)
T TIGR03032 148 PEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPH-----SPR------WYQGKLW 216 (335)
T ss_pred ccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCc-----CCc------EeCCeEE
Confidence 344443 3456677774 443 2111110 1234456688888853221 14552 454 4689999
Q ss_pred EEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCC
Q 013797 339 SLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGAS 390 (436)
Q Consensus 339 v~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~ 390 (436)
+.....+.+..+|+++++.+.+..+|..+ .|+++ + |.+.++|-+
T Consensus 217 vldsgtGev~~vD~~~G~~e~Va~vpG~~-----rGL~f--~-G~llvVgmS 260 (335)
T TIGR03032 217 LLNSGRGELGYVDPQAGKFQPVAFLPGFT-----RGLAF--A-GDFAFVGLS 260 (335)
T ss_pred EEECCCCEEEEEcCCCCcEEEEEECCCCC-----cccce--e-CCEEEEEec
Confidence 99988899999999999999998887532 23443 3 666666643
No 156
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.66 E-value=43 Score=29.87 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=59.8
Q ss_pred eEEEECCEEEEEeccCCCCCcCCEEEEEECCCCc--EEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEEC
Q 013797 275 SGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT--WYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLK 352 (436)
Q Consensus 275 ~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~--W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~ 352 (436)
+....+|+||.-.|..+ ...+.++|+.+++ |++--+ + ..-.+-+++..++.+|.+--..+-.+.||+
T Consensus 50 GL~~~~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~~l~-~------~~~FgEGit~~gd~~y~LTw~egvaf~~d~ 118 (262)
T COG3823 50 GLEYLDGHILESTGLYG----FSKIRVSDLTTGQEIFSEKLA-P------DTVFGEGITKLGDYFYQLTWKEGVAFKYDA 118 (262)
T ss_pred ceeeeCCEEEEeccccc----cceeEEEeccCceEEEEeecC-C------ccccccceeeccceEEEEEeccceeEEECh
Confidence 45677888888877654 3468899998664 544222 1 223566788999999999765566777777
Q ss_pred CCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCC
Q 013797 353 DSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGAS 390 (436)
Q Consensus 353 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~ 390 (436)
.+ .+.++..+ ....++|.+ .-+..|++-.|.
T Consensus 119 ~t--~~~lg~~~---y~GeGWgLt--~d~~~LimsdGs 149 (262)
T COG3823 119 DT--LEELGRFS---YEGEGWGLT--SDDKNLIMSDGS 149 (262)
T ss_pred HH--hhhhcccc---cCCcceeee--cCCcceEeeCCc
Confidence 64 33443333 223344443 444555555443
No 157
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.65 E-value=1.6e+02 Score=32.88 Aligned_cols=190 Identities=12% Similarity=0.087 Sum_probs=96.5
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEE----EeCCEEEEEcCcCCCCCCccceEEEEeCCC----
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASA----TCGTFAFVAGGHGMDGSGVLNSAERYNPET---- 258 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~----~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t---- 258 (436)
.|++++.|+ ...+-++|....+ .+.++|..-.....+ ..++.++++|=.++ ++.+||-..
T Consensus 1177 ~G~Ll~tGd---~r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG-------svRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1177 SGHLLVTGD---VRSIRIWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIAAGFADG-------SVRVYDRRMAPPD 1244 (1387)
T ss_pred CCeEEecCC---eeEEEEEecccce--eEeecccCCCccceeecccccCCceEEEeecCC-------ceEEeecccCCcc
Confidence 678888775 3567888876654 333444332211111 13567777765443 367787542
Q ss_pred ---CCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCC--C-EEEE
Q 013797 259 ---KSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSP--P-LIAV 332 (436)
Q Consensus 259 ---~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~--~-~~~~ 332 (436)
+.|+.....+. ..+...--+|.--++.|.. ..+|..+|+....=....+.-. ...+| . ++.+
T Consensus 1245 s~v~~~R~h~~~~~--Iv~~slq~~G~~elvSgs~-----~G~I~~~DlR~~~~e~~~~iv~-----~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEP--IVHLSLQRQGLGELVSGSQ-----DGDIQLLDLRMSSKETFLTIVA-----HWEYGSALTALTV 1312 (1387)
T ss_pred ccceeecccCCccc--ceeEEeecCCCcceeeecc-----CCeEEEEecccCcccccceeee-----ccccCccceeeee
Confidence 33554433221 1121222223222333322 2357888887651111111110 01122 2 2333
Q ss_pred EC-CEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeec
Q 013797 333 VN-NELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCC 404 (436)
Q Consensus 333 ~~-g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~ 404 (436)
.. -.|+..|+. ..|.+|+...++-..+..-|.....+.++...++.+.-++.+.-|..+ ..|.+|++.
T Consensus 1313 H~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D---s~V~iYs~~ 1381 (1387)
T KOG1517|consen 1313 HEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD---STVSIYSCE 1381 (1387)
T ss_pred ccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC---ceEEEeecC
Confidence 32 356776654 889999988776555543343333344444556677778777777543 467888644
No 158
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=72.22 E-value=50 Score=33.25 Aligned_cols=147 Identities=10% Similarity=0.070 Sum_probs=74.0
Q ss_pred EEEeccCCCeEEEEecCCC-CeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCC-
Q 013797 144 VFMLASGDSSWWAFDRHFQ-TRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRP- 221 (436)
Q Consensus 144 l~~~~~~~~~~~~~dp~~~-~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~- 221 (436)
-.+|.++...+.++|.... .-..+..++...+......+-..-++.-+++||. .+.+-+||+.+-+=+.-..++..
T Consensus 432 rhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe--astlsiWDLAapTprikaeltssa 509 (705)
T KOG0639|consen 432 RHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSA 509 (705)
T ss_pred ceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc--cceeeeeeccCCCcchhhhcCCcc
Confidence 3455556667777776542 1111122222111111112233457777888886 56788888887665444444432
Q ss_pred CcccEEEE-eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEE--CCEEEEEeccCCCCCcCCE
Q 013797 222 RCLFASAT-CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYM--DNKFYVIGGRNEKDKPLTC 298 (436)
Q Consensus 222 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~g~iyv~gG~~~~~~~~~~ 298 (436)
-..++.+. -+.++.+..-.++ .|.+||+...+- +..++-.-.+.++..+ +|.=.+.||.+ +.
T Consensus 510 paCyALa~spDakvcFsccsdG-------nI~vwDLhnq~~--VrqfqGhtDGascIdis~dGtklWTGGlD------nt 574 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDG-------NIAVWDLHNQTL--VRQFQGHTDGASCIDISKDGTKLWTGGLD------NT 574 (705)
T ss_pred hhhhhhhcCCccceeeeeccCC-------cEEEEEccccee--eecccCCCCCceeEEecCCCceeecCCCc------cc
Confidence 22233333 3556655433332 388899987753 2233322223333333 46556667744 44
Q ss_pred EEEEECCCC
Q 013797 299 GEAYDEYAG 307 (436)
Q Consensus 299 v~~yD~~~~ 307 (436)
+-++|+.+.
T Consensus 575 vRcWDlreg 583 (705)
T KOG0639|consen 575 VRCWDLREG 583 (705)
T ss_pred eeehhhhhh
Confidence 566666544
No 159
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=72.14 E-value=80 Score=28.96 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=63.0
Q ss_pred CCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe
Q 013797 151 DSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC 230 (436)
Q Consensus 151 ~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~ 230 (436)
...+-.+|..+.+-.+--.++.+.... =+..+|.|+.+. .++.+-.+|+.+-.--+--.||.- ..++++
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSl-----Evs~dG~ilTia---~gssV~Fwdaksf~~lKs~k~P~n---V~SASL 232 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSL-----EVSQDGRILTIA---YGSSVKFWDAKSFGLLKSYKMPCN---VESASL 232 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcce-----eeccCCCEEEEe---cCceeEEeccccccceeeccCccc---cccccc
Confidence 345566677666554332333332211 234466665542 234577777765543333344432 223333
Q ss_pred --CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEE---ECCEEEEEeccCC
Q 013797 231 --GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCY---MDNKFYVIGGRNE 291 (436)
Q Consensus 231 --~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~---~~g~iyv~gG~~~ 291 (436)
+..+||.||.+. .++.||-.|+. ++........++.-++ =+|.+|..|..++
T Consensus 233 ~P~k~~fVaGged~-------~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 233 HPKKEFFVAGGEDF-------KVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred cCCCceEEecCcce-------EEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 457999999653 37888888875 2222222222221121 2899999986554
No 160
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=71.98 E-value=80 Score=28.88 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=96.0
Q ss_pred eEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECC----CCCEEeCCCCCCCCcccEEE
Q 013797 153 SWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELE----TNNWFKGPSMRRPRCLFASA 228 (436)
Q Consensus 153 ~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~----t~~W~~l~~~p~~r~~~~~~ 228 (436)
.........+.|.+=|. + .++.+|+. .......++.|... ...+.+.-.+|.+..+...+
T Consensus 11 ~~~~~~~~~GsWmrDpl-~--------------~~~r~~~~-~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~V 74 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPL-P--------------ADDRIYVM-NYFDGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHV 74 (249)
T ss_pred EEEeeccccceeecCCC-c--------------ccCceEEe-ccccCceEEEeccHHHhhccCcceEEeCCCCccccceE
Confidence 33455556677776331 1 15667777 33444566666553 23455555577777788888
Q ss_pred EeCCEEEEEcCcCCCCCCccceEEEEeCCCCC---eEeCCCCcc---------CCcceeEEEECCEEEEEeccCCCCCcC
Q 013797 229 TCGTFAFVAGGHGMDGSGVLNSAERYNPETKS---WDSLPGMRQ---------RRKLCSGCYMDNKFYVIGGRNEKDKPL 296 (436)
Q Consensus 229 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~---W~~~~~~p~---------~r~~~~~~~~~g~iyv~gG~~~~~~~~ 296 (436)
+++|.+|.-.+ ....+.+||..+.. |..++.+-. +......++...-++++--..+.. ..
T Consensus 75 VynGs~yynk~-------~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~-g~ 146 (249)
T KOG3545|consen 75 VYNGSLYYNKA-------GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENA-GT 146 (249)
T ss_pred EEcceEEeecc-------CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccC-Cc
Confidence 89988887753 23458889998843 555543311 111223344444466653322211 11
Q ss_pred CEEEEEECCC----CcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC---CeE-EEEECCCCcEEEc
Q 013797 297 TCGEAYDEYA----GTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSS---NEL-RVYLKDSNSWKNL 360 (436)
Q Consensus 297 ~~v~~yD~~~----~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~---~~i-~~yd~~~~~W~~v 360 (436)
-.+-.+|+.+ .+|..--+ .+....+.++=|.||++.... ..| ++||..+++=+.+
T Consensus 147 iv~skLdp~tl~~e~tW~T~~~---------k~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~ 209 (249)
T KOG3545|consen 147 IVLSKLDPETLEVERTWNTTLP---------KRSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERI 209 (249)
T ss_pred EEeeccCHHHhheeeeeccccC---------CCCcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecc
Confidence 1235677633 35643221 223334456668999997532 234 7899988776544
No 161
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=71.06 E-value=59 Score=29.97 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=70.3
Q ss_pred eeEEeCCEEEEEcee--cCCC---eEEEEE---CCCCCEEe--CCCCCC-------CCcccEEEEeCCEEEEEcCcCCCC
Q 013797 182 ESLCAGTHLIVSGNE--IEGG---VIWRYE---LETNNWFK--GPSMRR-------PRCLFASATCGTFAFVAGGHGMDG 244 (436)
Q Consensus 182 ~~~~~~~~iyv~GG~--~~~~---~v~~yd---p~t~~W~~--l~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~ 244 (436)
+...+++.||.+=-. ...+ ..+.|+ ...+.|++ ++..+. .-.-|+.+.+++.-|.+|=.+++-
T Consensus 79 SMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~ 158 (367)
T PF12217_consen 79 SMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV 158 (367)
T ss_dssp -EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SS
T ss_pred eeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCC
Confidence 466789999966321 1222 233343 35667865 333333 233567777787777777665543
Q ss_pred CCccceEE-EEeCCCCCeE--------eCCCC-ccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCC
Q 013797 245 SGVLNSAE-RYNPETKSWD--------SLPGM-RQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPD 314 (436)
Q Consensus 245 ~~~~~~~~-~yd~~t~~W~--------~~~~~-p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~ 314 (436)
. ...+= .|-+ +.|. .++.- ...-..+..-..+|+||+..-.....+.-..+..-+.....|..+.-
T Consensus 159 s--PRe~G~~yfs--~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 159 S--PRELGFLYFS--DAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp S--S-EEEEEEET--TTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-
T ss_pred C--cceeeEEEec--ccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc
Confidence 2 22221 2222 2232 22111 11111233446899999986433332244556667777788988752
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEec
Q 013797 315 ILKDFPAETGKSPPLIAVVNNELYSLET 342 (436)
Q Consensus 315 ~~~~~~~~~~r~~~~~~~~~g~lyv~gg 342 (436)
... ......-.+.+++.||++|.
T Consensus 235 p~n-----vHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 235 PNN-----VHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp TT--------SS---EEEETTEEEEEEE
T ss_pred ccc-----ccccCCCceeeCCEEEEEec
Confidence 221 12233335788999999974
No 162
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=70.33 E-value=89 Score=28.70 Aligned_cols=189 Identities=12% Similarity=0.047 Sum_probs=93.0
Q ss_pred EeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeE
Q 013797 185 CAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWD 262 (436)
Q Consensus 185 ~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~ 262 (436)
+-++...+.+|. ..+-.||..++.=..+..+..++...+++.+ +|+-...||.++ .+.++|.+.-.-.
T Consensus 49 Tpdk~~LAaa~~---qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-------t~kIWdlR~~~~q 118 (311)
T KOG0315|consen 49 TPDKKDLAAAGN---QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-------TVKIWDLRSLSCQ 118 (311)
T ss_pred cCCcchhhhccC---CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-------eEEEEeccCcccc
Confidence 334455555442 4788999988853222223334445455443 677666666553 3667777663222
Q ss_pred eCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEE-EECCEEEEEe
Q 013797 263 SLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIA-VVNNELYSLE 341 (436)
Q Consensus 263 ~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~-~~~g~lyv~g 341 (436)
..-..+.+. -..+.+-++--++-|- ....|.++|+.++...... +|.+. . .-..+. .-+|.+.+..
T Consensus 119 R~~~~~spV--n~vvlhpnQteLis~d-----qsg~irvWDl~~~~c~~~l-iPe~~---~--~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 119 RNYQHNSPV--NTVVLHPNQTELISGD-----QSGNIRVWDLGENSCTHEL-IPEDD---T--SIQSLTVMPDGSMLAAA 185 (311)
T ss_pred hhccCCCCc--ceEEecCCcceEEeec-----CCCcEEEEEccCCcccccc-CCCCC---c--ceeeEEEcCCCcEEEEe
Confidence 111111111 1222232222223222 2345899999999765433 22211 1 111233 3367777666
Q ss_pred cCCCeEEEEECCCCcEE-EcccCCCccCCCCCceEEEEE-eCCEEEEEcCCCCCCCCcEEEE
Q 013797 342 TSSNELRVYLKDSNSWK-NLGLVPVRADFNRGWGIAFKS-LGNELLVIGASSTSSHESMAIY 401 (436)
Q Consensus 342 g~~~~i~~yd~~~~~W~-~v~~~p~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~y 401 (436)
...+..++|+.-+.+-. ++.++. ....+.++.+.|.. -+++.++.-+.+ ..+.+|
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~-k~~ah~~~il~C~lSPd~k~lat~ssd----ktv~iw 242 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVH-KFQAHNGHILRCLLSPDVKYLATCSSD----KTVKIW 242 (311)
T ss_pred cCCccEEEEEccCCCccccceEhh-heecccceEEEEEECCCCcEEEeecCC----ceEEEE
Confidence 66778899887663321 222211 12334555555443 455655555554 344455
No 163
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.56 E-value=1.2e+02 Score=29.63 Aligned_cols=145 Identities=11% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCEEEEEceecCCCeEEEEECCCCC--EEeC--CC----CCCCCcccEEEEeCC---EEEEEcCcCCCCCCccceEEEEe
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNN--WFKG--PS----MRRPRCLFASATCGT---FAFVAGGHGMDGSGVLNSAERYN 255 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~--W~~l--~~----~p~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~~~~yd 255 (436)
.-+|+.+||....+.+.+||..+.+ |+-- |+ |-.|.-...+..+.+ .-++.+- ....+..||
T Consensus 160 ~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-------~~hqvR~YD 232 (412)
T KOG3881|consen 160 DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-------RYHQVRLYD 232 (412)
T ss_pred CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-------cceeEEEec
Confidence 3467778887766777888876653 6532 21 112222222222322 2222211 234688999
Q ss_pred CCCCCeEeCCCCc---cCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEc--CCCCCCCCCCCCCCCCEE
Q 013797 256 PETKSWDSLPGMR---QRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHI--PDILKDFPAETGKSPPLI 330 (436)
Q Consensus 256 ~~t~~W~~~~~~p---~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v--~~~~~~~~~~~~r~~~~~ 330 (436)
+..+. +.+...+ .+....+ -.-++++.++|- ....+-.||..+.+--.. ..+.. +.| .+
T Consensus 233 t~~qR-RPV~~fd~~E~~is~~~-l~p~gn~Iy~gn------~~g~l~~FD~r~~kl~g~~~kg~tG-----sir---si 296 (412)
T KOG3881|consen 233 TRHQR-RPVAQFDFLENPISSTG-LTPSGNFIYTGN------TKGQLAKFDLRGGKLLGCGLKGITG-----SIR---SI 296 (412)
T ss_pred CcccC-cceeEeccccCcceeee-ecCCCcEEEEec------ccchhheecccCceeeccccCCccC-----Ccc---eE
Confidence 98664 2222222 2222111 222444433332 344577899887763222 11110 111 23
Q ss_pred EEECC-EEEEEecCCCeEEEEECCC
Q 013797 331 AVVNN-ELYSLETSSNELRVYLKDS 354 (436)
Q Consensus 331 ~~~~g-~lyv~gg~~~~i~~yd~~~ 354 (436)
....+ .+...+|-...+.+||.++
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EEcCCCceEEeeccceeEEEeeccc
Confidence 33333 4666666566789999987
No 164
>PTZ00421 coronin; Provisional
Probab=67.46 E-value=1.5e+02 Score=30.35 Aligned_cols=145 Identities=10% Similarity=0.086 Sum_probs=68.0
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEe-----CCCCCCCCcccEEEEe---CCEEEEEcCcCCCCCCccceEEEEeCCC
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFK-----GPSMRRPRCLFASATC---GTFAFVAGGHGMDGSGVLNSAERYNPET 258 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~-----l~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~t 258 (436)
++.+++.|+. ...+.+||..++.... +..+.........+.+ ++.+++.||.+ ..+.++|..+
T Consensus 87 d~~~LaSgS~--DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-------gtVrIWDl~t 157 (493)
T PTZ00421 87 DPQKLFTASE--DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-------MVVNVWDVER 157 (493)
T ss_pred CCCEEEEEeC--CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-------CEEEEEECCC
Confidence 4555566553 3467888876543211 1111111111122222 23566666654 2478899887
Q ss_pred CCeE-eCCCCccCCcceeEE-EECCEEEEEeccCCCCCcCCEEEEEECCCCcEE-EcCCCCCCCCCCCCCCCCEEEEE--
Q 013797 259 KSWD-SLPGMRQRRKLCSGC-YMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWY-HIPDILKDFPAETGKSPPLIAVV-- 333 (436)
Q Consensus 259 ~~W~-~~~~~p~~r~~~~~~-~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~-~v~~~~~~~~~~~~r~~~~~~~~-- 333 (436)
++-. .+...... -.+.. .-++.+.+.|+.+ ..+.+||+.+++-. .+.... .... ..++..
T Consensus 158 g~~~~~l~~h~~~--V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~~H~------~~~~-~~~~w~~~ 222 (493)
T PTZ00421 158 GKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVEAHA------SAKS-QRCLWAKR 222 (493)
T ss_pred CeEEEEEcCCCCc--eEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEecCC------CCcc-eEEEEcCC
Confidence 6532 11111111 11122 2267777777643 35789999876521 111111 1111 011111
Q ss_pred CCEEEEEecC---CCeEEEEECCCC
Q 013797 334 NNELYSLETS---SNELRVYLKDSN 355 (436)
Q Consensus 334 ~g~lyv~gg~---~~~i~~yd~~~~ 355 (436)
++.|+..|.. .+.|..||..+.
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCC
Confidence 3455555532 467999998753
No 165
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=67.09 E-value=1.1e+02 Score=28.89 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=67.4
Q ss_pred eEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCE
Q 013797 250 SAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPL 329 (436)
Q Consensus 250 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~ 329 (436)
++..||..++.-+. .+.....--..++.+..=.++||.+ ..+-.||+.++.=..+.+.-. .-| +
T Consensus 36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~d------g~vr~~Dln~~~~~~igth~~-----~i~---c 99 (323)
T KOG1036|consen 36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLD------GQVRRYDLNTGNEDQIGTHDE-----GIR---C 99 (323)
T ss_pred cEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccC------ceEEEEEecCCcceeeccCCC-----ceE---E
Confidence 47788888773221 1111212223455566555667644 457899999887666665431 111 1
Q ss_pred EEEE-CCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEe
Q 013797 330 IAVV-NNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYT 402 (436)
Q Consensus 330 ~~~~-~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~ 402 (436)
+... ....++.|+..+.|..+|+... ....... ..-.+-+..+.+..+|+|+.+ ..|.+|.
T Consensus 100 i~~~~~~~~vIsgsWD~~ik~wD~R~~----~~~~~~d----~~kkVy~~~v~g~~LvVg~~~----r~v~iyD 161 (323)
T KOG1036|consen 100 IEYSYEVGCVISGSWDKTIKFWDPRNK----VVVGTFD----QGKKVYCMDVSGNRLVVGTSD----RKVLIYD 161 (323)
T ss_pred EEeeccCCeEEEcccCccEEEEecccc----ccccccc----cCceEEEEeccCCEEEEeecC----ceEEEEE
Confidence 1111 2334566778889999999861 1111110 011233335666667777765 3566663
No 166
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=66.82 E-value=1.4e+02 Score=29.57 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=84.0
Q ss_pred ccCCeEEEecc--CC-CeEEEEecCCC-----CeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceec-CCCeEEEEECCC
Q 013797 139 FREPSVFMLAS--GD-SSWWAFDRHFQ-----TRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEI-EGGVIWRYELET 209 (436)
Q Consensus 139 ~~~~~l~~~~~--~~-~~~~~~dp~~~-----~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~-~~~~v~~ydp~t 209 (436)
....++++... .. ..++..|.... .|..+.+-..... ..+...++.+|+.-... ....+..++..+
T Consensus 236 ~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~-----~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~ 310 (414)
T PF02897_consen 236 KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE-----YYVDHHGDRLYILTNDDAPNGRLVAVDLAD 310 (414)
T ss_dssp TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E-----EEEEEETTEEEEEE-TT-TT-EEEEEETTS
T ss_pred CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE-----EEEEccCCEEEEeeCCCCCCcEEEEecccc
Confidence 34455555443 23 56788888764 6766643111111 12345588888875433 235888898887
Q ss_pred CC---EE-eCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCC-CCCeEeCCCCccCCcceeEEE---ECC
Q 013797 210 NN---WF-KGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPE-TKSWDSLPGMRQRRKLCSGCY---MDN 281 (436)
Q Consensus 210 ~~---W~-~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~r~~~~~~~---~~g 281 (436)
.. |. .+.+-......-.+...++++++..-.+ ....+.++|+. +..-..++. |.. ....... -.+
T Consensus 311 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-----~~~~l~v~~~~~~~~~~~~~~-p~~-g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 311 PSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-----GSSRLRVYDLDDGKESREIPL-PEA-GSVSGVSGDFDSD 383 (414)
T ss_dssp TSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET-----TEEEEEEEETT-TEEEEEEES-SSS-SEEEEEES-TT-S
T ss_pred cccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC-----CccEEEEEECCCCcEEeeecC-Ccc-eEEeccCCCCCCC
Confidence 76 66 4433222223344455688888775433 34578999998 333333322 221 1111111 123
Q ss_pred EE-EEEeccCCCCCcCCEEEEEECCCCcEEEc
Q 013797 282 KF-YVIGGRNEKDKPLTCGEAYDEYAGTWYHI 312 (436)
Q Consensus 282 ~i-yv~gG~~~~~~~~~~v~~yD~~~~~W~~v 312 (436)
.+ +.+.+.. ....++.||+.+++-+.+
T Consensus 384 ~~~~~~ss~~----~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 384 ELRFSYSSFT----TPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEEEETT----EEEEEEEEETTTTCEEEE
T ss_pred EEEEEEeCCC----CCCEEEEEECCCCCEEEE
Confidence 33 4444433 355789999999987654
No 167
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.76 E-value=1.1e+02 Score=28.37 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=54.6
Q ss_pred eEEEEeCCCCC--eEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCC--cEEEcC--CCCCCCCCCC
Q 013797 250 SAERYNPETKS--WDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAG--TWYHIP--DILKDFPAET 323 (436)
Q Consensus 250 ~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~--~W~~v~--~~~~~~~~~~ 323 (436)
.+-.-|+.++. |+.+ ...|...++.++++. .|+|-++ ..++..+.+++ -|.... ...
T Consensus 34 ~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~------g~lYfl~~~tGs~~w~f~~~~~vk------- 96 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYS------GGLYFLCVKTGSQIWNFVILETVK------- 96 (354)
T ss_pred eEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEcc------CcEEEEEecchhheeeeeehhhhc-------
Confidence 36667888876 8865 335666677777776 5666543 34677787776 465433 221
Q ss_pred CCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cEE
Q 013797 324 GKSPPLIAVVNNELYSLETSSNELRVYLKDSN--SWK 358 (436)
Q Consensus 324 ~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~--~W~ 358 (436)
..+ .+..++.+...|......++.|+.+. .|+
T Consensus 97 --~~a-~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 97 --VRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred --cce-EEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 112 23334444445666778999999875 365
No 168
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=66.75 E-value=1.4e+02 Score=29.66 Aligned_cols=179 Identities=10% Similarity=0.040 Sum_probs=82.5
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCC-CCCcccEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCCC
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMR-RPRCLFASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETKS 260 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 260 (436)
+...++..|++|-. ..++.=.=.-.+|+.++..+ .+-.......+ ++.++++|... .+++-+-.-.+
T Consensus 142 v~f~~~~g~~vG~~---G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G--------~v~~S~D~G~t 210 (398)
T PLN00033 142 ISFKGKEGWIIGKP---AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG--------AIYVTSNAGRN 210 (398)
T ss_pred eEEECCEEEEEcCc---eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEeccc--------eEEEECCCCCC
Confidence 44457788888632 23333333346799876422 12122333334 34577776321 24443334468
Q ss_pred eEeCCCCc----cCCc--------------ceeEE-EECCEEEEEeccCCCCCcCCEEE-EEECCCCcEEEcCCCCCCCC
Q 013797 261 WDSLPGMR----QRRK--------------LCSGC-YMDNKFYVIGGRNEKDKPLTCGE-AYDEYAGTWYHIPDILKDFP 320 (436)
Q Consensus 261 W~~~~~~p----~~r~--------------~~~~~-~~~g~iyv~gG~~~~~~~~~~v~-~yD~~~~~W~~v~~~~~~~~ 320 (436)
|+.+...+ ..+. ...+. .-++.++++|- ...++ ..|.-...|+.+....
T Consensus 211 W~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~-------~G~~~~s~d~G~~~W~~~~~~~---- 279 (398)
T PLN00033 211 WKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSS-------RGNFYLTWEPGQPYWQPHNRAS---- 279 (398)
T ss_pred ceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEEC-------CccEEEecCCCCcceEEecCCC----
Confidence 98762211 1100 01111 12445555542 11223 3344444588877443
Q ss_pred CCCCCCCCEE-EEECCEEEEEecCCCeEEEEECCCCcE-----EEcccCCCccCCCCCceEEEEEeCCEEEEEcCCC
Q 013797 321 AETGKSPPLI-AVVNNELYSLETSSNELRVYLKDSNSW-----KNLGLVPVRADFNRGWGIAFKSLGNELLVIGASS 391 (436)
Q Consensus 321 ~~~~r~~~~~-~~~~g~lyv~gg~~~~i~~yd~~~~~W-----~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~ 391 (436)
.+...++ ...++.+++++. .+.+..-+-....| .++..-. ......++. ...++.++++|...
T Consensus 280 ---~~~l~~v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~~f~~~~~~~---~~~~l~~v~-~~~d~~~~a~G~~G 348 (398)
T PLN00033 280 ---ARRIQNMGWRADGGLWLLTR-GGGLYVSKGTGLTEEDFDFEEADIKS---RGFGILDVG-YRSKKEAWAAGGSG 348 (398)
T ss_pred ---ccceeeeeEcCCCCEEEEeC-CceEEEecCCCCcccccceeecccCC---CCcceEEEE-EcCCCcEEEEECCC
Confidence 1122222 234788888874 45565555544544 5443210 001111222 23467888888664
No 169
>PRK02889 tolB translocation protein TolB; Provisional
Probab=63.73 E-value=1.6e+02 Score=29.35 Aligned_cols=145 Identities=6% Similarity=-0.085 Sum_probs=70.6
Q ss_pred CCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCC-EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE
Q 013797 199 GGVIWRYELETNNWFKGPSMRRPRCLFASATCGT-FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC 277 (436)
Q Consensus 199 ~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 277 (436)
...+++.|.....-+.+.....+-... ...-++ +|+... ... ....++++|..+++=+.+...+.. ......
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p-~wSPDG~~la~~s-~~~----~~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~ 247 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISP-AWSPDGTKLAYVS-FES----KKPVVYVHDLATGRRRVVANFKGS-NSAPAW 247 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccc-eEcCCCCEEEEEE-ccC----CCcEEEEEECCCCCEEEeecCCCC-ccceEE
Confidence 357888887655444443222211111 111244 444332 221 134689999988765555333311 111122
Q ss_pred EECC-EEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEEEec--CCCeEEEEECC
Q 013797 278 YMDN-KFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN-ELYSLET--SSNELRVYLKD 353 (436)
Q Consensus 278 ~~~g-~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~gg--~~~~i~~yd~~ 353 (436)
.-+| +|++....+ ....++.+|..++....+..... ....+ ...-+| .|+.... ....|+.+|..
T Consensus 248 SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~lt~~~~------~~~~~-~wSpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 248 SPDGRTLAVALSRD----GNSQIYTVNADGSGLRRLTQSSG------IDTEP-FFSPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred CCCCCEEEEEEccC----CCceEEEEECCCCCcEECCCCCC------CCcCe-EEcCCCCEEEEEecCCCCcEEEEEECC
Confidence 2245 454433322 23578899988777666653221 00111 122245 4544432 13468888888
Q ss_pred CCcEEEcc
Q 013797 354 SNSWKNLG 361 (436)
Q Consensus 354 ~~~W~~v~ 361 (436)
++..+.+.
T Consensus 317 ~g~~~~lt 324 (427)
T PRK02889 317 GGAAQRVT 324 (427)
T ss_pred CCceEEEe
Confidence 77777664
No 170
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=63.62 E-value=99 Score=29.72 Aligned_cols=110 Identities=9% Similarity=0.105 Sum_probs=66.3
Q ss_pred CcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEE
Q 013797 222 RCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEA 301 (436)
Q Consensus 222 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~ 301 (436)
|....++-++++ |++.... -.++-+++..|.... ..+...+.+.+..-++|++.|-|. .-+.+-.
T Consensus 320 rAaVNvVdfd~k-yIVsASg------DRTikvW~~st~efv--Rtl~gHkRGIAClQYr~rlvVSGS------SDntIRl 384 (499)
T KOG0281|consen 320 RAAVNVVDFDDK-YIVSASG------DRTIKVWSTSTCEFV--RTLNGHKRGIACLQYRDRLVVSGS------SDNTIRL 384 (499)
T ss_pred hhheeeeccccc-eEEEecC------CceEEEEeccceeee--hhhhcccccceehhccCeEEEecC------CCceEEE
Confidence 333344446777 4443322 134677777765543 233334445666678999988876 3456888
Q ss_pred EECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCC
Q 013797 302 YDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDS 354 (436)
Q Consensus 302 yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~ 354 (436)
||.+.+.--.+-.-- ...-| .+-++++=.+-|++.+.|.+||..+
T Consensus 385 wdi~~G~cLRvLeGH----EeLvR----ciRFd~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 385 WDIECGACLRVLEGH----EELVR----CIRFDNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred EeccccHHHHHHhch----HHhhh----heeecCceeeeccccceEEEEeccc
Confidence 998887643321110 01122 3567888888899999999988865
No 171
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.30 E-value=2.2e+02 Score=31.16 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=71.4
Q ss_pred EEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCC--EEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCC
Q 013797 189 HLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGT--FAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPG 266 (436)
Q Consensus 189 ~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~ 266 (436)
-++|.||++..-.+|++| .|+.|+.-. +-..-...+++.+.. .+.+..|.+ .++.+||....+=-+.-.
T Consensus 219 pliVSG~DDRqVKlWrmn-etKaWEvDt-crgH~nnVssvlfhp~q~lIlSnsED-------ksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 219 PLIVSGADDRQVKLWRMN-ETKAWEVDT-CRGHYNNVSSVLFHPHQDLILSNSED-------KSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceEEecCCcceeeEEEec-cccceeehh-hhcccCCcceEEecCccceeEecCCC-------ccEEEEecccccceeeee
Confidence 466777766667888887 577787532 111122334555543 455554433 357788877654222211
Q ss_pred CccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCe
Q 013797 267 MRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNE 346 (436)
Q Consensus 267 ~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~ 346 (436)
-...|...-++-=...+|..|- -+.+++|-++ |..++.++.+|.||.+- ...
T Consensus 290 rendRFW~laahP~lNLfAAgH-------DsGm~VFkle-------------------RErpa~~v~~n~LfYvk--d~~ 341 (1202)
T KOG0292|consen 290 RENDRFWILAAHPELNLFAAGH-------DSGMIVFKLE-------------------RERPAYAVNGNGLFYVK--DRF 341 (1202)
T ss_pred ccCCeEEEEEecCCcceeeeec-------CCceEEEEEc-------------------ccCceEEEcCCEEEEEc--cce
Confidence 1233433333332455555542 2335666543 22345677788887775 367
Q ss_pred EEEEECCCCcEE
Q 013797 347 LRVYLKDSNSWK 358 (436)
Q Consensus 347 i~~yd~~~~~W~ 358 (436)
|..||..+.+=.
T Consensus 342 i~~~d~~t~~d~ 353 (1202)
T KOG0292|consen 342 IRSYDLRTQKDT 353 (1202)
T ss_pred EEeeeccccccc
Confidence 888888774433
No 172
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=62.99 E-value=1.4e+02 Score=28.23 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=66.6
Q ss_pred CeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEE
Q 013797 200 GVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYM 279 (436)
Q Consensus 200 ~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 279 (436)
..+..|+..++.-+. .+...-.-..++..+..-.+.||.++ .+.+||..++.=..++.--.+.....-...
T Consensus 35 gslrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~dg-------~vr~~Dln~~~~~~igth~~~i~ci~~~~~ 105 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLDG-------QVRRYDLNTGNEDQIGTHDEGIRCIEYSYE 105 (323)
T ss_pred CcEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccCc-------eEEEEEecCCcceeeccCCCceEEEEeecc
Confidence 457778777773211 11111112334445555556677653 488999998876655432222111111112
Q ss_pred CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC
Q 013797 280 DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 280 ~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~ 355 (436)
.|. .|.||++ ..+..+|+....=. ...- .+.... ...+.|..+++|+....+.+||+.+.
T Consensus 106 ~~~-vIsgsWD------~~ik~wD~R~~~~~--~~~d------~~kkVy-~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 106 VGC-VISGSWD------KTIKFWDPRNKVVV--GTFD------QGKKVY-CMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred CCe-EEEcccC------ccEEEEeccccccc--cccc------cCceEE-EEeccCCEEEEeecCceEEEEEcccc
Confidence 333 3556644 45778888752111 1110 111122 23345556667777788999998764
No 173
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=61.54 E-value=1.5e+02 Score=28.20 Aligned_cols=182 Identities=14% Similarity=0.193 Sum_probs=78.3
Q ss_pred CCCCEEeCCCCCCCCcccEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCC-ccC--CcceeEEEECCEE
Q 013797 208 ETNNWFKGPSMRRPRCLFASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGM-RQR--RKLCSGCYMDNKF 283 (436)
Q Consensus 208 ~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-p~~--r~~~~~~~~~g~i 283 (436)
..+.|+.+. +|.......+... ..+-|++|-.. .+..=+=.-.+|+..... ..+ ....+....++..
T Consensus 4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g--------~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g 74 (302)
T PF14870_consen 4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYG--------TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEG 74 (302)
T ss_dssp SS--EEEEE--S-SS-EEEEEESSSS-EEEEETTT--------EEEEESSTTSS-EE-----S-----EEEEEEEETTEE
T ss_pred cCCCcEEee-cCCCCceEEEEEecCCEEEEEecCC--------EEEEECCCCccccccccCCCccceeeEEEEEecCCce
Confidence 356798886 3334444455555 46778887532 122211123579887432 222 1223344568889
Q ss_pred EEEeccCCCCCcCCEEEEEECCCCcEEEcCC-CCCCCCCCCCCCCCEEEEE-CCEEEEEecCCCeEEEEECCCCcEEEcc
Q 013797 284 YVIGGRNEKDKPLTCGEAYDEYAGTWYHIPD-ILKDFPAETGKSPPLIAVV-NNELYSLETSSNELRVYLKDSNSWKNLG 361 (436)
Q Consensus 284 yv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~-~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~~~~i~~yd~~~~~W~~v~ 361 (436)
|++|. ...++.-.-.-.+|++++. .+ .+-....+..+ ++.+++++. .+.|++=.-...+|+.+.
T Consensus 75 ~ivG~-------~g~ll~T~DgG~tW~~v~l~~~------lpgs~~~i~~l~~~~~~l~~~-~G~iy~T~DgG~tW~~~~ 140 (302)
T PF14870_consen 75 WIVGE-------PGLLLHTTDGGKTWERVPLSSK------LPGSPFGITALGDGSAELAGD-RGAIYRTTDGGKTWQAVV 140 (302)
T ss_dssp EEEEE-------TTEEEEESSTTSS-EE----TT-------SS-EEEEEEEETTEEEEEET-T--EEEESSTTSSEEEEE
T ss_pred EEEcC-------CceEEEecCCCCCcEEeecCCC------CCCCeeEEEEcCCCcEEEEcC-CCcEEEeCCCCCCeeEcc
Confidence 98873 1223333334569999862 11 11122233433 556676653 567777766778999975
Q ss_pred cCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEE-eecCCCCCCccCcEEeecCCCCCCceeeee
Q 013797 362 LVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIY-TCCPSSDAGELQWRLLECGKRPLSHFIHNC 431 (436)
Q Consensus 362 ~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y-~~~p~~d~~~~~W~~l~~~~~~~~~~~~~~ 431 (436)
.-.. .........-++++++++...+ +| +++ .+...|.... .+.+|.+.++
T Consensus 141 ~~~~-----gs~~~~~r~~dG~~vavs~~G~-------~~~s~~----~G~~~w~~~~---r~~~~riq~~ 192 (302)
T PF14870_consen 141 SETS-----GSINDITRSSDGRYVAVSSRGN-------FYSSWD----PGQTTWQPHN---RNSSRRIQSM 192 (302)
T ss_dssp -S---------EEEEEE-TTS-EEEEETTSS-------EEEEE-----TT-SS-EEEE-----SSS-EEEE
T ss_pred cCCc-----ceeEeEEECCCCcEEEEECccc-------EEEEec----CCCccceEEc---cCccceehhc
Confidence 3221 1111111245667776765442 22 223 4555788777 3444555444
No 174
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=61.52 E-value=92 Score=30.07 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=32.9
Q ss_pred CeEEEEecCCCCeEeCCCCCCC-CCcc--CCCeeeEE-eCCEEEEEceecCCCeEEEEECCCCCEEe
Q 013797 152 SSWWAFDRHFQTRRKLPELPSD-PCFK--LGDKESLC-AGTHLIVSGNEIEGGVIWRYELETNNWFK 214 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~~~~-~~~~--~~~~~~~~-~~~~iyv~GG~~~~~~v~~ydp~t~~W~~ 214 (436)
.-+..||+.+-+-..=-.+|.. +... .......+ -+..+||.. ..+...|-+-|...++.-.
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-FTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-ESSSEEEEEEETTTTEEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc-cCCCCeEEEEECCCCceee
Confidence 4567899988753322233332 2111 11111233 355666653 3455789999999998644
No 175
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=59.03 E-value=2.7e+02 Score=30.36 Aligned_cols=210 Identities=12% Similarity=0.083 Sum_probs=99.9
Q ss_pred CeEEEeccCCCeEEEEecCCCC--eEeCCCCCCCCCcc----CCC---------------eeeEEeCCEEEEEceecCCC
Q 013797 142 PSVFMLASGDSSWWAFDRHFQT--RRKLPELPSDPCFK----LGD---------------KESLCAGTHLIVSGNEIEGG 200 (436)
Q Consensus 142 ~~l~~~~~~~~~~~~~dp~~~~--W~~l~~~~~~~~~~----~~~---------------~~~~~~~~~iyv~GG~~~~~ 200 (436)
..+|+.. ....++++|..+++ |+.-+..+...... ++. ...+..++.||+.. ...
T Consensus 195 g~lYv~t-~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T---~Dg 270 (764)
T TIGR03074 195 DTLYLCT-PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT---SDA 270 (764)
T ss_pred CEEEEEC-CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec---CCC
Confidence 4455543 35678888888654 76554443221000 000 00112345666532 234
Q ss_pred eEEEEECCCCC--EEe-----------CCCCCCCC--cccEEEEeCCEEEEEcCcCCCC--CCccceEEEEeCCCCC--e
Q 013797 201 VIWRYELETNN--WFK-----------GPSMRRPR--CLFASATCGTFAFVAGGHGMDG--SGVLNSAERYNPETKS--W 261 (436)
Q Consensus 201 ~v~~ydp~t~~--W~~-----------l~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~t~~--W 261 (436)
.++.+|..|++ |.. ++..+... ...+-++.++.||+-+...... ....-.+..||.+|++ |
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 57777777776 432 12222111 2233355688877743322110 0123468899999986 7
Q ss_pred EeCC--C-----CccC----Ccce---eEEEE---CCEEEEEeccC-----------CCCCcCCEEEEEECCCC--cEEE
Q 013797 262 DSLP--G-----MRQR----RKLC---SGCYM---DNKFYVIGGRN-----------EKDKPLTCGEAYDEYAG--TWYH 311 (436)
Q Consensus 262 ~~~~--~-----~p~~----r~~~---~~~~~---~g~iyv~gG~~-----------~~~~~~~~v~~yD~~~~--~W~~ 311 (436)
+.-. + ++.. +... ....+ .|.+|+--|.. ....+.+.+.++|.+|+ +|+.
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 6421 1 1110 1100 11222 35677744421 11235678999999988 5865
Q ss_pred cCCCCCCCCCCCCCCCCEEEEE---CCE---EEEEecCCCeEEEEECCCCc
Q 013797 312 IPDILKDFPAETGKSPPLIAVV---NNE---LYSLETSSNELRVYLKDSNS 356 (436)
Q Consensus 312 v~~~~~~~~~~~~r~~~~~~~~---~g~---lyv~gg~~~~i~~yd~~~~~ 356 (436)
-......... ..-..+.++-+ +|+ +.+.+.-.+.++++|.++.+
T Consensus 431 Q~~~hD~WD~-D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 431 QTVHHDLWDM-DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred cccCCccccc-cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 3311110011 11122233322 552 55555556778888888753
No 176
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=58.47 E-value=2.1e+02 Score=28.91 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=74.8
Q ss_pred eCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeE---
Q 013797 186 AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWD--- 262 (436)
Q Consensus 186 ~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~--- 262 (436)
..+.+++.|+. ...+.++|..+.+-.+.=.............-++..++.+..+ ..+.+||..++.=.
T Consensus 256 p~g~~i~Sgs~--D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d-------~~i~vwd~~~~~~~~~~ 326 (456)
T KOG0266|consen 256 PDGNLLVSGSD--DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD-------GTIRVWDLETGSKLCLK 326 (456)
T ss_pred CCCCEEEEecC--CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC-------ccEEEEECCCCceeeee
Confidence 35567777764 3568899998855333222111221112222366777777543 24889999988732
Q ss_pred eCCCCccCCcceeEEEE-CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcC-CCCCCCCCCCCCCCCEEE-EECCEEEE
Q 013797 263 SLPGMRQRRKLCSGCYM-DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIP-DILKDFPAETGKSPPLIA-VVNNELYS 339 (436)
Q Consensus 263 ~~~~~p~~r~~~~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~-~~~~~~~~~~~r~~~~~~-~~~g~lyv 339 (436)
.+.....+.....+... +++..+.+.. -+.+-.||+....-.... .... ..++....+ ..+++..+
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~------d~~~~~w~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASL------DRTLKLWDLRSGKSVGTYTGHSN-----LVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecC------CCeEEEEEccCCcceeeecccCC-----cceeEecccccCCCCeEE
Confidence 33222222111122222 4444444432 124566676655322111 1111 001111122 33667777
Q ss_pred EecCCCeEEEEECCC
Q 013797 340 LETSSNELRVYLKDS 354 (436)
Q Consensus 340 ~gg~~~~i~~yd~~~ 354 (436)
.|.....|..||+.+
T Consensus 396 sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSS 410 (456)
T ss_pred EEeCCceEEEEeCCc
Confidence 777788999999987
No 177
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.21 E-value=1.9e+02 Score=27.58 Aligned_cols=236 Identities=12% Similarity=0.032 Sum_probs=117.0
Q ss_pred CCeEEEecc-CCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEe-CCEEEEEceecCC--CeEEEEECCCCCEEeCC
Q 013797 141 EPSVFMLAS-GDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCA-GTHLIVSGNEIEG--GVIWRYELETNNWFKGP 216 (436)
Q Consensus 141 ~~~l~~~~~-~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~--~~v~~ydp~t~~W~~l~ 216 (436)
.+...+|.. ++.-..+||+.+.+-...-..+..+.|.. +.+.+. +..+|..-..... ..+-+||.. +..+++.
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~ 92 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIG 92 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEe
Confidence 344444444 66778899999887554333344444432 234444 5677776554333 578899998 7788887
Q ss_pred CCCCC-CcccEEEEe-CC-EEEEE-cCcCCC---CCCc------cceEEEEeCCCCCeEeCCCCcc----CCcceeEEEE
Q 013797 217 SMRRP-RCLFASATC-GT-FAFVA-GGHGMD---GSGV------LNSAERYNPETKSWDSLPGMRQ----RRKLCSGCYM 279 (436)
Q Consensus 217 ~~p~~-r~~~~~~~~-~~-~iyv~-GG~~~~---~~~~------~~~~~~yd~~t~~W~~~~~~p~----~r~~~~~~~~ 279 (436)
..+.. ..-|-+... ++ .|.|. ||.... +... -.++...|..+++-..--.+|. --..|-++--
T Consensus 93 E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~ 172 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG 172 (305)
T ss_pred EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC
Confidence 76643 344555554 44 45444 555322 1111 1345567788776332212222 1112333333
Q ss_pred CCEEEEEecc-CCCC-CcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEE-CCE-EEEEecCCCeEEEEECCCC
Q 013797 280 DNKFYVIGGR-NEKD-KPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVV-NNE-LYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 280 ~g~iyv~gG~-~~~~-~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~-~g~-lyv~gg~~~~i~~yd~~~~ 355 (436)
+|.+ ++|.. .+.. ...--+..++.... -+.+ .++.+.......+..++++. ++. +.+..-.-+.+.+||..++
T Consensus 173 ~G~V-~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~-~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 173 DGTV-AFAMQYQGDPGDAPPLVALHRRGGA-LRLL-PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred CCcE-EEEEecCCCCCccCCeEEEEcCCCc-ceec-cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 4444 44432 2221 11222333333221 1111 12111111122344444444 333 4444444578999999999
Q ss_pred cEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCC
Q 013797 356 SWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGAS 390 (436)
Q Consensus 356 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~ 390 (436)
.|.....++. .+|++ ..++...+..|.
T Consensus 250 ~~~~~~~l~D------~cGva--~~~~~f~~ssG~ 276 (305)
T PF07433_consen 250 RLLGSVPLPD------ACGVA--PTDDGFLVSSGQ 276 (305)
T ss_pred CEeeccccCc------eeeee--ecCCceEEeCCC
Confidence 9999876663 23343 455554444444
No 178
>PTZ00421 coronin; Provisional
Probab=55.66 E-value=2.5e+02 Score=28.85 Aligned_cols=154 Identities=7% Similarity=0.000 Sum_probs=71.4
Q ss_pred CEEEEEceecCCCeEEEEECCCCCEE-eCCCCCCCCcccEEEE-eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeE-eC
Q 013797 188 THLIVSGNEIEGGVIWRYELETNNWF-KGPSMRRPRCLFASAT-CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWD-SL 264 (436)
Q Consensus 188 ~~iyv~GG~~~~~~v~~ydp~t~~W~-~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~~ 264 (436)
+.+++.|+. ...+.+||..+++-. .+..... .-.+++. -++.+++.|+.+ ..+.+||+.+++-. .+
T Consensus 138 ~~iLaSgs~--DgtVrIWDl~tg~~~~~l~~h~~--~V~sla~spdG~lLatgs~D-------g~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 138 MNVLASAGA--DMVVNVWDVERGKAVEVIKCHSD--QITSLEWNLDGSLLCTTSKD-------KKLNIIDPRDGTIVSSV 206 (493)
T ss_pred CCEEEEEeC--CCEEEEEECCCCeEEEEEcCCCC--ceEEEEEECCCCEEEEecCC-------CEEEEEECCCCcEEEEE
Confidence 345555553 356889999877532 2211111 1112222 256677777654 25888999876521 11
Q ss_pred CCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEE--CCEEEEEec
Q 013797 265 PGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVV--NNELYSLET 342 (436)
Q Consensus 265 ~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~--~g~lyv~gg 342 (436)
..-...+........++..++..|.+.. ....+..||+.+..-. +..... .......+..+ ++.+++++|
T Consensus 207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~p-~~~~~~-----d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 207 EAHASAKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMASP-YSTVDL-----DQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred ecCCCCcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCCc-eeEecc-----CCCCceEEEEEcCCCCEEEEEE
Confidence 1111111111111123333444443221 2356888998654311 100000 00011112222 455555554
Q ss_pred -CCCeEEEEECCCCcEEEc
Q 013797 343 -SSNELRVYLKDSNSWKNL 360 (436)
Q Consensus 343 -~~~~i~~yd~~~~~W~~v 360 (436)
..+.|..||..+++....
T Consensus 279 kgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 279 KGEGNIRCFELMNERLTFC 297 (493)
T ss_pred eCCCeEEEEEeeCCceEEE
Confidence 367899999988765443
No 179
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=55.02 E-value=1.7e+02 Score=26.88 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=66.9
Q ss_pred CCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE
Q 013797 198 EGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC 277 (436)
Q Consensus 198 ~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 277 (436)
....+-.+|..|++=.+--.++.+... .-+..+|.|..+.- -.++--.|+.+-.=-+--.||.....++ .
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~ilTia~--------gssV~Fwdaksf~~lKs~k~P~nV~SAS-L 232 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGRILTIAY--------GSSVKFWDAKSFGLLKSYKMPCNVESAS-L 232 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcc-eeeccCCCEEEEec--------CceeEEeccccccceeeccCcccccccc-c
Confidence 446788899988875443333333221 11223555554421 1124444544322111123343322111 1
Q ss_pred EECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEE---CCEEEEEecCCCeEEEEEC
Q 013797 278 YMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVV---NNELYSLETSSNELRVYLK 352 (436)
Q Consensus 278 ~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~---~g~lyv~gg~~~~i~~yd~ 352 (436)
.=+..+||.||.+ -.++.||..++.= +.... ....++..|+- +|.+|..|...++|..|..
T Consensus 233 ~P~k~~fVaGged------~~~~kfDy~TgeE--i~~~n------kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 233 HPKKEFFVAGGED------FKVYKFDYNTGEE--IGSYN------KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred cCCCceEEecCcc------eEEEEEeccCCce--eeecc------cCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 1144689999854 3468899887752 22211 22333333432 8999999987788777654
No 180
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=54.99 E-value=3e+02 Score=29.55 Aligned_cols=50 Identities=24% Similarity=0.438 Sum_probs=30.1
Q ss_pred CCEEEEEecCCCeEEEEECCCCcEEEc--c-cCCCccCCCCCceEEEEEeCCEEEEEcCCC
Q 013797 334 NNELYSLETSSNELRVYLKDSNSWKNL--G-LVPVRADFNRGWGIAFKSLGNELLVIGASS 391 (436)
Q Consensus 334 ~g~lyv~gg~~~~i~~yd~~~~~W~~v--~-~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~ 391 (436)
||++++++--.+++.+|=.++-+...- + .+|.. .+.+ ..+.++++.|+.+
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~-------smDI-S~DSklivTgSAD 571 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL-------SMDI-SPDSKLIVTGSAD 571 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeeccccccee-------EEec-cCCcCeEEeccCC
Confidence 688888876667888887777554421 1 22321 0111 4677788887765
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=53.65 E-value=1.8e+02 Score=26.67 Aligned_cols=140 Identities=11% Similarity=0.152 Sum_probs=72.9
Q ss_pred eCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEe
Q 013797 186 AGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDS 263 (436)
Q Consensus 186 ~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~ 263 (436)
..|.|+..||+ ..++..|..+++-++.-. -+.-+-|+++.- ++.| +.|+.++ .+.++|.+|.+-..
T Consensus 125 ~enSi~~AgGD---~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi-lsG~EDG-------tvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 125 SENSILFAGGD---GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI-LSGAEDG-------TVRVWDTKTQKHVS 192 (325)
T ss_pred CCCcEEEecCC---eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce-eecCCCc-------cEEEEeccccceeE
Confidence 46778877764 478889999998765321 011233444432 2333 3344332 47788998887654
Q ss_pred C-CC-----CccCCc--ceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC
Q 013797 264 L-PG-----MRQRRK--LCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN 335 (436)
Q Consensus 264 ~-~~-----~p~~r~--~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g 335 (436)
+ .+ ..+|.. ...+...+..-.+.||- ..+-.+++.+.+=+.+-++|. ....|.+.+
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-------p~lslwhLrsse~t~vfpipa---------~v~~v~F~~ 256 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-------PKLSLWHLRSSESTCVFPIPA---------RVHLVDFVD 256 (325)
T ss_pred EeccccChhhcCcccCceeEEEeccCceEEecCC-------CceeEEeccCCCceEEEeccc---------ceeEeeeec
Confidence 3 22 122222 22344445555555552 123456666555555555541 122455555
Q ss_pred EEEEEecCCCeEEEEECC
Q 013797 336 ELYSLETSSNELRVYLKD 353 (436)
Q Consensus 336 ~lyv~gg~~~~i~~yd~~ 353 (436)
...+.+|..+.+..|...
T Consensus 257 d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 257 DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ceEEEeccccceeeeeec
Confidence 555555555666666554
No 182
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=53.54 E-value=1.9e+02 Score=26.98 Aligned_cols=143 Identities=10% Similarity=0.077 Sum_probs=81.9
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe--C--CEEEEEcCcCCCCCCccceEEEEeCCCCCeE
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--G--TFAFVAGGHGMDGSGVLNSAERYNPETKSWD 262 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~ 262 (436)
++.-.|.|. ..+.+..||.....=.++..-.. |...+++.+ + +-+++-+|.+ +.+-++|+.+-+-+
T Consensus 116 dn~qivSGS--rDkTiklwnt~g~ck~t~~~~~~-~~WVscvrfsP~~~~p~Ivs~s~D-------ktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 116 DNRQIVSGS--RDKTIKLWNTLGVCKYTIHEDSH-REWVSCVRFSPNESNPIIVSASWD-------KTVKVWNLRNCQLR 185 (315)
T ss_pred CCceeecCC--CcceeeeeeecccEEEEEecCCC-cCcEEEEEEcCCCCCcEEEEccCC-------ceEEEEccCCcchh
Confidence 444455543 23567777776665444443221 444444444 2 3455555543 35778888765432
Q ss_pred eCCCCccCCc---ceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEE
Q 013797 263 SLPGMRQRRK---LCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYS 339 (436)
Q Consensus 263 ~~~~~p~~r~---~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv 339 (436)
.+-.+.. ....+.-||.+...||.++ .++.+|+...+= +..+. ....-.++++..++.++
T Consensus 186 ---~~~~gh~~~v~t~~vSpDGslcasGgkdg------~~~LwdL~~~k~--lysl~------a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 186 ---TTFIGHSGYVNTVTVSPDGSLCASGGKDG------EAMLWDLNEGKN--LYSLE------AFDIVNSLCFSPNRYWL 248 (315)
T ss_pred ---hccccccccEEEEEECCCCCEEecCCCCc------eEEEEEccCCce--eEecc------CCCeEeeEEecCCceeE
Confidence 2222222 1223345899999998654 457788776653 33332 22233456777788888
Q ss_pred EecCCCeEEEEECCCCc
Q 013797 340 LETSSNELRVYLKDSNS 356 (436)
Q Consensus 340 ~gg~~~~i~~yd~~~~~ 356 (436)
+-+....|.+||.+++.
T Consensus 249 ~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKA 265 (315)
T ss_pred eeccCCceEEEeccchh
Confidence 87777789999988754
No 183
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=53.16 E-value=98 Score=29.18 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=46.4
Q ss_pred CCEEEEEe-cc-CCCC----CcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCE-EEEEC-------CEEEEEecCCC
Q 013797 280 DNKFYVIG-GR-NEKD----KPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPL-IAVVN-------NELYSLETSSN 345 (436)
Q Consensus 280 ~g~iyv~g-G~-~~~~----~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~-~~~~~-------g~lyv~gg~~~ 345 (436)
.|+|+|+. |. +..+ .....+++||+++++=...-.+|.+... +.+... +++.. +.+|+......
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~--~~s~lndl~VD~~~~~~~~~~aYItD~~~~ 88 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP--PDSFLNDLVVDVRDGNCDDGFAYITDSGGP 88 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTC
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc--cccccceEEEEccCCCCcceEEEEeCCCcC
Confidence 57888884 33 2111 2356899999999985443344432211 112222 22322 47899887777
Q ss_pred eEEEEECCCC-cEEEccc
Q 013797 346 ELRVYLKDSN-SWKNLGL 362 (436)
Q Consensus 346 ~i~~yd~~~~-~W~~v~~ 362 (436)
.+.+||..++ .|+.+..
T Consensus 89 glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 89 GLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEEEETTTTEEEEEETC
T ss_pred cEEEEEccCCcEEEEecC
Confidence 9999999986 5666643
No 184
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=52.82 E-value=1.9e+02 Score=26.65 Aligned_cols=213 Identities=12% Similarity=0.127 Sum_probs=96.8
Q ss_pred CCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeE--EeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEE
Q 013797 150 GDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESL--CAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFAS 227 (436)
Q Consensus 150 ~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~--~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~ 227 (436)
+...+-.||..++.=.++.....+... -.++ -.+|+....||. ...+-++|...-+-++.-..+.|. -.+
T Consensus 59 ~~qhvRlyD~~S~np~Pv~t~e~h~kN----VtaVgF~~dgrWMyTgse--Dgt~kIWdlR~~~~qR~~~~~spV--n~v 130 (311)
T KOG0315|consen 59 GNQHVRLYDLNSNNPNPVATFEGHTKN----VTAVGFQCDGRWMYTGSE--DGTVKIWDLRSLSCQRNYQHNSPV--NTV 130 (311)
T ss_pred cCCeeEEEEccCCCCCceeEEeccCCc----eEEEEEeecCeEEEecCC--CceEEEEeccCcccchhccCCCCc--ceE
Confidence 346777899887642211111111111 0111 124555455553 346777777664333332222221 122
Q ss_pred EEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCC-cceeEEEE-CCEEEEEeccCCCCCcCCEEEEEECC
Q 013797 228 ATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRR-KLCSGCYM-DNKFYVIGGRNEKDKPLTCGEAYDEY 305 (436)
Q Consensus 228 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r-~~~~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~ 305 (436)
+..-+.--++.|.. ...++++|+.++...... +|..- .-.++.+. +|++.+. ..+ ....+++++-
T Consensus 131 vlhpnQteLis~dq------sg~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a-~nn-----kG~cyvW~l~ 197 (311)
T KOG0315|consen 131 VLHPNQTELISGDQ------SGNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAA-ANN-----KGNCYVWRLL 197 (311)
T ss_pred EecCCcceEEeecC------CCcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEE-ecC-----CccEEEEEcc
Confidence 22333322333322 234899999999765432 23222 12233333 5554443 322 2235777765
Q ss_pred CCcE-EEcCCCCCCCCCCCCCCCCEE-EEE--CCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeC
Q 013797 306 AGTW-YHIPDILKDFPAETGKSPPLI-AVV--NNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLG 381 (436)
Q Consensus 306 ~~~W-~~v~~~~~~~~~~~~r~~~~~-~~~--~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~ 381 (436)
+..- +++.++-. ...+.++.+ |.+ +++.+...+...++.+|+.++. .+.-..+.. ..+-.+.+++ ..+
T Consensus 198 ~~~~~s~l~P~~k----~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~g--h~rWvWdc~F-S~d 269 (311)
T KOG0315|consen 198 NHQTASELEPVHK----FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTG--HQRWVWDCAF-SAD 269 (311)
T ss_pred CCCccccceEhhh----eecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeec--CCceEEeeee-ccC
Confidence 5321 12222211 123344443 222 6666666666778999998876 222111111 2234455553 445
Q ss_pred CEEEEEcCCC
Q 013797 382 NELLVIGASS 391 (436)
Q Consensus 382 ~~l~v~GG~~ 391 (436)
+.-+|.|+.+
T Consensus 270 g~YlvTassd 279 (311)
T KOG0315|consen 270 GEYLVTASSD 279 (311)
T ss_pred ccEEEecCCC
Confidence 5555555555
No 185
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=52.48 E-value=2.4e+02 Score=27.73 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=85.1
Q ss_pred EeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEE--eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeE
Q 013797 185 CAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASAT--CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWD 262 (436)
Q Consensus 185 ~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~ 262 (436)
..+.++|+..+. .+.+.++|..+++-..- .+.++.-+..+. .++++||..... ..+.+.++|..+++=.
T Consensus 83 ~~~~~vyv~~~~--~~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~vYV~n~~~-----~~~~vsvid~~t~~~~ 153 (381)
T COG3391 83 PAGNKVYVTTGD--SNTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKYVYVANAGN-----GNNTVSVIDAATNKVT 153 (381)
T ss_pred CCCCeEEEecCC--CCeEEEEcCcccceeeE--eeeccCCceEEECCCCCEEEEEeccc-----CCceEEEEeCCCCeEE
Confidence 457789998654 46788899666653222 122222233333 366899986532 2457899999988743
Q ss_pred eC---CCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEE--ECCEE
Q 013797 263 SL---PGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAV--VNNEL 337 (436)
Q Consensus 263 ~~---~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~--~~g~l 337 (436)
.. +..| ...+....+.++|+... ..+.+..+|+.+..=.. ....... ........+.+ .+.++
T Consensus 154 ~~~~vG~~P---~~~a~~p~g~~vyv~~~------~~~~v~vi~~~~~~v~~-~~~~~~~--~~~~~P~~i~v~~~g~~~ 221 (381)
T COG3391 154 ATIPVGNTP---TGVAVDPDGNKVYVTNS------DDNTVSVIDTSGNSVVR-GSVGSLV--GVGTGPAGIAVDPDGNRV 221 (381)
T ss_pred EEEecCCCc---ceEEECCCCCeEEEEec------CCCeEEEEeCCCcceec-ccccccc--ccCCCCceEEECCCCCEE
Confidence 32 2223 11122233566999862 35678899987774332 2211000 01112222222 24468
Q ss_pred EEEecCC--CeEEEEECCCCcEE
Q 013797 338 YSLETSS--NELRVYLKDSNSWK 358 (436)
Q Consensus 338 yv~gg~~--~~i~~yd~~~~~W~ 358 (436)
|+..... +.+...|..++.=.
T Consensus 222 yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 222 YVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred EEEeccCCCceEEEEeCCCceEE
Confidence 8887655 58888888876433
No 186
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=51.34 E-value=1.1e+02 Score=30.11 Aligned_cols=189 Identities=13% Similarity=0.053 Sum_probs=89.3
Q ss_pred EEEeccCCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeE-Ee-CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCC
Q 013797 144 VFMLASGDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESL-CA-GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRP 221 (436)
Q Consensus 144 l~~~~~~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~-~~-~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~ 221 (436)
+++...+...+...|..+.+-... ++.....+. ..+ +- +.++|+.+. ...+-++|+.+++ .+...+..
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~--i~~~~~~h~---~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~--~v~~i~~G 77 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVAR--IPTGGAPHA---GLKFSPDGRYLYVANR---DGTVSVIDLATGK--VVATIKVG 77 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEE--EE-STTEEE---EEE-TT-SSEEEEEET---TSEEEEEETTSSS--EEEEEE-S
T ss_pred EEEEecCCCEEEEEECCCCeEEEE--EcCCCCcee---EEEecCCCCEEEEEcC---CCeEEEEECCccc--EEEEEecC
Confidence 344444567888999888654321 221111111 122 22 568999853 3579999999998 33333444
Q ss_pred CcccEEEE-eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeE-eC--CCCc----cCCcceeEEEECCEEEEEeccCCCC
Q 013797 222 RCLFASAT-CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWD-SL--PGMR----QRRKLCSGCYMDNKFYVIGGRNEKD 293 (436)
Q Consensus 222 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~~--~~~p----~~r~~~~~~~~~g~iyv~gG~~~~~ 293 (436)
......+. -+|+..+++.+. .+.+.++|.++.+=. .+ ..++ .+|...-.....+..|++.-.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk---- 147 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYE------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK---- 147 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEE------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----
T ss_pred CCcceEEEcCCCCEEEEEecC------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----
Confidence 43344443 355443443332 346888998876532 22 2222 122211111224445555432
Q ss_pred CcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEE-CCEEEEEe-cCCCeEEEEECCCCcEEE
Q 013797 294 KPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVV-NNELYSLE-TSSNELRVYLKDSNSWKN 359 (436)
Q Consensus 294 ~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~-~g~lyv~g-g~~~~i~~yd~~~~~W~~ 359 (436)
....++..|.....=..+..+. ..+..+..... +++-|+++ ...+.+-+.|.++++=..
T Consensus 148 -d~~~I~vVdy~d~~~~~~~~i~------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 148 -DTGEIWVVDYSDPKNLKVTTIK------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp -TTTEEEEEETTTSSCEEEEEEE--------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred -cCCeEEEEEeccccccceeeec------ccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 2456788886654211111111 22222333333 45544443 346789999988875443
No 187
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=50.02 E-value=3.2e+02 Score=28.43 Aligned_cols=170 Identities=9% Similarity=0.075 Sum_probs=89.9
Q ss_pred CCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcce-eE
Q 013797 198 EGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLC-SG 276 (436)
Q Consensus 198 ~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~-~~ 276 (436)
..+.+.+||..+++-..+-.- .-....++.+++.+.|.|.+++ .+-++|+.+.+.-. .+.. .... -.
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~-------~v~VW~~~~~~cl~--sl~g-H~~~V~s 376 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYDG-------TVKVWDPRTGKCLK--SLSG-HTGRVYS 376 (537)
T ss_pred CCceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecCc-------eEEEEEhhhceeee--eecC-CcceEEE
Confidence 346788888886664443210 1111223445677777776553 48889998665322 1111 1111 12
Q ss_pred EEECC-EEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC
Q 013797 277 CYMDN-KFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 277 ~~~~g-~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~ 355 (436)
..+++ ..++-|+.+ ..+.++|+.+.. ..+..+.. .........+.+.+++-+...+.|..||.+++
T Consensus 377 l~~~~~~~~~Sgs~D------~~IkvWdl~~~~-~c~~tl~~------h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 377 LIVDSENRLLSGSLD------TTIKVWDLRTKR-KCIHTLQG------HTSLVSSLLLRDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEecCcceEEeeeec------cceEeecCCchh-hhhhhhcC------CcccccccccccceeEeccccccEEEeecccC
Confidence 24566 555556543 457888888775 22222221 11111112345677777777888999999988
Q ss_pred cEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEe
Q 013797 356 SWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYT 402 (436)
Q Consensus 356 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~ 402 (436)
+-.++-.-+ ...++.+..++...++..+.+. .+.+|.
T Consensus 444 ~~~~~~~~~------~~~~v~~l~~~~~~il~s~~~~----~~~l~d 480 (537)
T KOG0274|consen 444 ECLRTLEGR------HVGGVSALALGKEEILCSSDDG----SVKLWD 480 (537)
T ss_pred ceeeeeccC------CcccEEEeecCcceEEEEecCC----eeEEEe
Confidence 766653221 1122333344446666666553 455553
No 188
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.97 E-value=3e+02 Score=27.82 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=59.7
Q ss_pred CCEEEEEcCcCCCCCCccceEEEEeCCCC-C-eEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCc
Q 013797 231 GTFAFVAGGHGMDGSGVLNSAERYNPETK-S-WDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT 308 (436)
Q Consensus 231 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~-~-W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~ 308 (436)
+++ |++.|..+ ..+.++|...+ . -+.+...+... ...++.-.+++++.|+.+ ..+.++|..+.+
T Consensus 214 d~~-~l~s~s~D------~tiriwd~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D------~tvriWd~~~~~ 279 (456)
T KOG0266|consen 214 DGS-YLLSGSDD------KTLRIWDLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDD------GTVRIWDVRTGE 279 (456)
T ss_pred CCc-EEEEecCC------ceEEEeeccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCC------CcEEEEeccCCe
Confidence 444 55555443 35888998444 2 33444434333 222223356788888744 457899998854
Q ss_pred EEEcCCCCCCCCCCCCCCCCEEE--EECCEEEEEecCCCeEEEEECCCCcE
Q 013797 309 WYHIPDILKDFPAETGKSPPLIA--VVNNELYSLETSSNELRVYLKDSNSW 357 (436)
Q Consensus 309 W~~v~~~~~~~~~~~~r~~~~~~--~~~g~lyv~gg~~~~i~~yd~~~~~W 357 (436)
=...-..- . .....+ .-++.+++.+...+.+.+||..+..-
T Consensus 280 ~~~~l~~h------s--~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 280 CVRKLKGH------S--DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred EEEeeecc------C--CceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 33221111 1 111122 23677777777788999999998764
No 189
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=48.79 E-value=2.4e+02 Score=26.63 Aligned_cols=178 Identities=12% Similarity=0.102 Sum_probs=88.4
Q ss_pred EeCCEEEEEceecCCCeEEEEECCCCCEE---eC-CCCCCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCC
Q 013797 185 CAGTHLIVSGNEIEGGVIWRYELETNNWF---KG-PSMRRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPET 258 (436)
Q Consensus 185 ~~~~~iyv~GG~~~~~~v~~ydp~t~~W~---~l-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t 258 (436)
+-.+..+..||.+ +..-+|+..+..=+ ++ ..++....+.+++.+ +++|.-..|- .++-.+|.++
T Consensus 106 sPSg~~VAcGGLd--N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--------~TCalWDie~ 175 (343)
T KOG0286|consen 106 SPSGNFVACGGLD--NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--------MTCALWDIET 175 (343)
T ss_pred CCCCCeEEecCcC--ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC--------ceEEEEEccc
Confidence 3466666777754 45667777755322 11 234444444455544 4455443332 2466788887
Q ss_pred CCeEeCCCCccCCcce----eEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEE-E
Q 013797 259 KSWDSLPGMRQRRKLC----SGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAV-V 333 (436)
Q Consensus 259 ~~W~~~~~~p~~r~~~----~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~-~ 333 (436)
++=...-. .+.+- +..-.+++.||-||.+.. ...+|.....-. +.++.... .--++.. -
T Consensus 176 g~~~~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~~------aklWD~R~~~c~--qtF~ghes-----DINsv~ffP 239 (343)
T KOG0286|consen 176 GQQTQVFH---GHTGDVMSLSLSPSDGNTFVSGGCDKS------AKLWDVRSGQCV--QTFEGHES-----DINSVRFFP 239 (343)
T ss_pred ceEEEEec---CCcccEEEEecCCCCCCeEEecccccc------eeeeeccCccee--Eeeccccc-----ccceEEEcc
Confidence 75332210 11110 001127889999986653 367777766432 22221100 0001112 2
Q ss_pred CCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCC
Q 013797 334 NNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASS 391 (436)
Q Consensus 334 ~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~ 391 (436)
+|.-+..|......-.||+..++=..+ ........-..++++ ...|+|++.|..+
T Consensus 240 ~G~afatGSDD~tcRlyDlRaD~~~a~--ys~~~~~~gitSv~F-S~SGRlLfagy~d 294 (343)
T KOG0286|consen 240 SGDAFATGSDDATCRLYDLRADQELAV--YSHDSIICGITSVAF-SKSGRLLFAGYDD 294 (343)
T ss_pred CCCeeeecCCCceeEEEeecCCcEEee--eccCcccCCceeEEE-cccccEEEeeecC
Confidence 566667766667788899887653332 111111111122332 5678888888655
No 190
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=48.52 E-value=3.8e+02 Score=28.84 Aligned_cols=150 Identities=11% Similarity=0.127 Sum_probs=80.3
Q ss_pred EEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCC-
Q 013797 184 LCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKS- 260 (436)
Q Consensus 184 ~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~- 260 (436)
.+-+|.+.+.|+.+ ..+-+||..++-...- +..+-..++++.+ .++..+....++ .+..+|...-.
T Consensus 358 YSpDgq~iaTG~eD--gKVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~g~~llssSLDG-------tVRAwDlkRYrN 426 (893)
T KOG0291|consen 358 YSPDGQLIATGAED--GKVKVWNTQSGFCFVT--FTEHTSGVTAVQFTARGNVLLSSSLDG-------TVRAWDLKRYRN 426 (893)
T ss_pred ECCCCcEEEeccCC--CcEEEEeccCceEEEE--eccCCCceEEEEEEecCCEEEEeecCC-------eEEeeeecccce
Confidence 34588888888753 4677888665432111 1112223333332 445544443332 36667766433
Q ss_pred eEeCCCCccCCcceeEEEEC--CEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEE---EEECC
Q 013797 261 WDSLPGMRQRRKLCSGCYMD--NKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLI---AVVNN 335 (436)
Q Consensus 261 W~~~~~~p~~r~~~~~~~~~--g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~---~~~~g 335 (436)
.+.. ..|.++. ++.+..| |.|.+.|+.+. -.|.+++.+|++--.+-+ ++.++.. ....+
T Consensus 427 fRTf-t~P~p~Q-fscvavD~sGelV~AG~~d~-----F~IfvWS~qTGqllDiLs---------GHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 427 FRTF-TSPEPIQ-FSCVAVDPSGELVCAGAQDS-----FEIFVWSVQTGQLLDILS---------GHEGPVSGLSFSPDG 490 (893)
T ss_pred eeee-cCCCcee-eeEEEEcCCCCEEEeeccce-----EEEEEEEeecCeeeehhc---------CCCCcceeeEEcccc
Confidence 2333 2233433 3344455 88888887654 358888988887544322 2222221 22356
Q ss_pred EEEEEecCCCeEEEEECCCCcEEEcc
Q 013797 336 ELYSLETSSNELRVYLKDSNSWKNLG 361 (436)
Q Consensus 336 ~lyv~gg~~~~i~~yd~~~~~W~~v~ 361 (436)
.+.+-|...++|.+||.-. .|..+.
T Consensus 491 ~~LaS~SWDkTVRiW~if~-s~~~vE 515 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFS-SSGTVE 515 (893)
T ss_pred CeEEeccccceEEEEEeec-cCceee
Confidence 6666677788898888743 333443
No 191
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=48.34 E-value=34 Score=21.12 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=16.9
Q ss_pred EEEECCEEEEEecCCCeEEEEECCC
Q 013797 330 IAVVNNELYSLETSSNELRVYLKDS 354 (436)
Q Consensus 330 ~~~~~g~lyv~gg~~~~i~~yd~~~ 354 (436)
.++.++++|+.+. .+.++++|+++
T Consensus 17 ~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-T-TSEEEEEETT-
T ss_pred CEEECCEEEEEcC-CCEEEEEeCCC
Confidence 3666888888754 68899999875
No 192
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=46.44 E-value=45 Score=25.30 Aligned_cols=39 Identities=18% Similarity=0.023 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEE
Q 013797 344 SNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVI 387 (436)
Q Consensus 344 ~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~ 387 (436)
.+.++.|||++++.+.+.. . -....|+++..-+..|+|.
T Consensus 36 ~GRll~ydp~t~~~~vl~~--~---L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD--G---LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE--E---ESSEEEEEE-TTSSEEEEE
T ss_pred CcCEEEEECCCCeEEEehh--C---CCccCeEEEcCCCCEEEEE
Confidence 4579999999999988742 1 1233456653344445553
No 193
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.30 E-value=3.4e+02 Score=27.72 Aligned_cols=165 Identities=10% Similarity=0.020 Sum_probs=85.6
Q ss_pred CeEEEEECCCCCEEeCCCCCCCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcce-eE
Q 013797 200 GVIWRYELETNNWFKGPSMRRPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLC-SG 276 (436)
Q Consensus 200 ~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~-~~ 276 (436)
..++.++-.+.+-..+-++- +...+++.+ +|..+.+|-.++ .+++||..+.. .+..|....... ++
T Consensus 197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g-------~v~iwD~~~~k--~~~~~~~~h~~rvg~ 265 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDG-------TVQIWDVKEQK--KTRTLRGSHASRVGS 265 (484)
T ss_pred ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCC-------eEEEEehhhcc--ccccccCCcCceeEE
Confidence 46778888777766665544 444445444 466777765432 58899987654 222333212222 33
Q ss_pred EEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEE-EECCEEEEEecCCCeEEEEECCCC
Q 013797 277 CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIA-VVNNELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 277 ~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~~~~i~~yd~~~~ 355 (436)
...++.+...|..++ .+..+|.....=. +..+.. ..+...++. ..++..+.-||..+.+.+||....
T Consensus 266 laW~~~~lssGsr~~------~I~~~dvR~~~~~-~~~~~~-----H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 266 LAWNSSVLSSGSRDG------KILNHDVRISQHV-VSTLQG-----HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred EeccCceEEEecCCC------cEEEEEEecchhh-hhhhhc-----ccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 345777777776443 4677776543210 001110 111111222 225677777888889999998443
Q ss_pred cEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCC
Q 013797 356 SWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASS 391 (436)
Q Consensus 356 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~ 391 (436)
.+..- +- ....+.-.++++.+...|+..||..
T Consensus 334 ~p~~~--~~--~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 334 EPKFT--FT--EHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred cccEE--Ee--ccceeeeEeeeCCCccCceEEcCCC
Confidence 32221 00 0111112234445667777777765
No 194
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=45.74 E-value=4.8e+02 Score=29.30 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=81.4
Q ss_pred ccceEEEEeCCCCCeEeCCCCccCCcceeEE--EE---CC-EEEEEeccCCCC-----CcCCEEEEEECCCC--cEEEcC
Q 013797 247 VLNSAERYNPETKSWDSLPGMRQRRKLCSGC--YM---DN-KFYVIGGRNEKD-----KPLTCGEAYDEYAG--TWYHIP 313 (436)
Q Consensus 247 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~--~~---~g-~iyv~gG~~~~~-----~~~~~v~~yD~~~~--~W~~v~ 313 (436)
....+.++|+.+++=..+-.++..-...+.+ .+ +. .+..+|+..... .....++.|+...+ +-.-+.
T Consensus 851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 4556888888777644332333322222222 11 22 244455432211 11234666665332 222222
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCC
Q 013797 314 DILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTS 393 (436)
Q Consensus 314 ~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~ 393 (436)
... .+-..++++-..|++++ |..+.+.+||.-.++-......... +..-.... ..+.+|+| |-.
T Consensus 931 ~T~------~~~~v~Ai~~f~~~~La--gvG~~l~~YdlG~K~lLRk~e~k~~--p~~Is~iq--t~~~RI~V-gD~--- 994 (1205)
T KOG1898|consen 931 KTE------IPGPVGAICPFQGRVLA--GVGRFLRLYDLGKKKLLRKCELKFI--PNRISSIQ--TYGARIVV-GDI--- 994 (1205)
T ss_pred ccC------CCccceEEeccCCEEEE--ecccEEEEeeCChHHHHhhhhhccC--ceEEEEEe--ecceEEEE-eec---
Confidence 211 12233456666775444 3447899999876543332221110 01111122 45566655 322
Q ss_pred CCCcEEEEeecCCCCCCccCcEEeecCCCCCCceeeeeEEee
Q 013797 394 SHESMAIYTCCPSSDAGELQWRLLECGKRPLSHFIHNCSVMV 435 (436)
Q Consensus 394 ~~~~~~~y~~~p~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~ 435 (436)
..++..|.|+++.+ .-..+.+ -|.+|...++..|.
T Consensus 995 -qeSV~~~~y~~~~n----~l~~fad--D~~pR~Vt~~~~lD 1029 (1205)
T KOG1898|consen 995 -QESVHFVRYRREDN----QLIVFAD--DPVPRHVTALELLD 1029 (1205)
T ss_pred -cceEEEEEEecCCC----eEEEEeC--CCccceeeEEEEec
Confidence 24677788887655 6666664 37888888777764
No 195
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=45.26 E-value=3.9e+02 Score=28.14 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=40.4
Q ss_pred ECCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEE
Q 013797 333 VNNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIY 401 (436)
Q Consensus 333 ~~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y 401 (436)
.+++++++.-...+++.++.++.+-+++...........-..++....|+.|.++++.. .+.+|
T Consensus 439 d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g-----~I~v~ 502 (691)
T KOG2048|consen 439 DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG-----QIFVY 502 (691)
T ss_pred cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccc-----eEEEE
Confidence 35677777645668889999888888876443322222223344446788888888553 55666
No 196
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=44.94 E-value=9.4 Score=37.52 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=36.8
Q ss_pred CCCCCChHHHHHHhhccCCcccccccccccHhhhhhhccchh
Q 013797 89 SFVPSLSDELEVLIVARVPRAEYWKFYLLNKRFLSLLKSGEL 130 (436)
Q Consensus 89 ~~~~~LPddl~~~ILarLP~~~l~~~~~Vck~w~~li~s~~f 130 (436)
.+.-.||.|++.++++.|..+++.+.+.+|+.|..+..+..=
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~ 111 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSC 111 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccc
Confidence 344579999999999999999999999999999998877653
No 197
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.92 E-value=1.7e+02 Score=30.99 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=37.5
Q ss_pred CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEE-EEECCEEEEEecCCCeEEEEECCC
Q 013797 280 DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLI-AVVNNELYSLETSSNELRVYLKDS 354 (436)
Q Consensus 280 ~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~-~~~~g~lyv~gg~~~~i~~yd~~~ 354 (436)
+|+..+.|+. -..|..||+.+++= +..+... .. ...++ ...+|.+++.||..++|..||...
T Consensus 588 ~Gr~LaSg~e------d~~I~iWDl~~~~~--v~~l~~H----t~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 588 CGRYLASGDE------DGLIKIWDLANGSL--VKQLKGH----TG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCceEeeccc------CCcEEEEEcCCCcc--hhhhhcc----cC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 6666666663 34578999887642 2222110 00 01111 245899999999999999998754
No 198
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=44.11 E-value=3.1e+02 Score=26.53 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=100.4
Q ss_pred CCEEEEEcee--cCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe--CC-EEEEEcCcCCCCCCccceEEEEeCCCC-C
Q 013797 187 GTHLIVSGNE--IEGGVIWRYELETNNWFKGPSMRRPRCLFASATC--GT-FAFVAGGHGMDGSGVLNSAERYNPETK-S 260 (436)
Q Consensus 187 ~~~iyv~GG~--~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~-~ 260 (436)
+..+|++... ...-..+.+|+..++-..+...+.+-...+.+.+ ++ .+|++ -+. ...+.+|-..++ .
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~A-nY~------~g~v~v~p~~~dG~ 123 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVA-NYH------SGSVSVYPLQADGS 123 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEE-Ecc------CceEEEEEcccCCc
Confidence 4478987654 3345778889888888887655444433333333 34 33333 222 235666666543 2
Q ss_pred -eEe------CCCCccCCc----ceeE-EEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCC
Q 013797 261 -WDS------LPGMRQRRK----LCSG-CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPP 328 (436)
Q Consensus 261 -W~~------~~~~p~~r~----~~~~-~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~ 328 (436)
|.. .+.-|..|. .|.+ ..-++++.++--. -.+.+..|+.+.+.-+....... .+...+| |
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-----G~Dri~~y~~~dg~L~~~~~~~v-~~G~GPR--H 195 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-----GTDRIFLYDLDDGKLTPADPAEV-KPGAGPR--H 195 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-----CCceEEEEEcccCcccccccccc-CCCCCcc--e
Confidence 222 122233442 1222 2224543333211 25678899988776655442211 0011222 2
Q ss_pred EEEEECC-EEEEEecCCCe--EEEEECCCCcEEEccc---CCCccCCCCCceEEEE-EeCC-EEEEEcCCCCCCCCcEEE
Q 013797 329 LIAVVNN-ELYSLETSSNE--LRVYLKDSNSWKNLGL---VPVRADFNRGWGIAFK-SLGN-ELLVIGASSTSSHESMAI 400 (436)
Q Consensus 329 ~~~~~~g-~lyv~gg~~~~--i~~yd~~~~~W~~v~~---~p~~~~~~~~~~~~~~-~~~~-~l~v~GG~~~~~~~~~~~ 400 (436)
-+.--++ ..|++.--.++ ++.||....+.++++. ||..-.... .++++. ..+| -||+.. ...+.+.+
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~-~~aaIhis~dGrFLYasN----Rg~dsI~~ 270 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN-WAAAIHISPDGRFLYASN----RGHDSIAV 270 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC-ceeEEEECCCCCEEEEec----CCCCeEEE
Confidence 2222244 45888754454 5556666678888764 444322222 223322 2344 455542 22347889
Q ss_pred EeecCCCC
Q 013797 401 YTCCPSSD 408 (436)
Q Consensus 401 y~~~p~~d 408 (436)
|..+|...
T Consensus 271 f~V~~~~g 278 (346)
T COG2706 271 FSVDPDGG 278 (346)
T ss_pred EEEcCCCC
Confidence 98887643
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=44.04 E-value=2.2e+02 Score=24.88 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=36.8
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCC
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLP 265 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~ 265 (436)
+..+.++-|.. ...+.+||.....=..+ +........-.-+|+..++||.... ..++..||.. +...+.
T Consensus 71 g~~favi~g~~-~~~v~lyd~~~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~----~G~l~~wd~~--~~~~i~ 139 (194)
T PF08662_consen 71 GNEFAVIYGSM-PAKVTLYDVKGKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNL----NGDLEFWDVR--KKKKIS 139 (194)
T ss_pred CCEEEEEEccC-CcccEEEcCcccEeEee---cCCCceEEEECCCCCEEEEEEccCC----CcEEEEEECC--CCEEee
Confidence 55666654533 34788999863333333 2211111111126777788876532 2468899988 444443
No 200
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=43.17 E-value=4.5e+02 Score=28.25 Aligned_cols=175 Identities=11% Similarity=0.093 Sum_probs=87.9
Q ss_pred CeEEEEECCCCCEEeCCCCCCCCc-ccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEE-
Q 013797 200 GVIWRYELETNNWFKGPSMRRPRC-LFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGC- 277 (436)
Q Consensus 200 ~~v~~ydp~t~~W~~l~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~- 277 (436)
..+.+||..++.-.+.-.....+. -+.....++.+.++-|+.+. .+.+|+..++ .+.-++..+..+..+
T Consensus 43 E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG------sVqif~~~s~---~~~~tfngHK~AVt~l 113 (888)
T KOG0306|consen 43 EQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG------SVQIFSLESE---EILITFNGHKAAVTTL 113 (888)
T ss_pred ccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc------eEEeeccCCC---ceeeeecccccceEEE
Confidence 468899998884332222222232 22333446666666666532 4788888766 222222222211111
Q ss_pred EE--CCEEEEEeccCCCCCcCCEEEEEECCCCcEE-EcCCCCCCCCCCCCCCCCEEEEEC-CEEEEEecCCCeEEEEECC
Q 013797 278 YM--DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWY-HIPDILKDFPAETGKSPPLIAVVN-NELYSLETSSNELRVYLKD 353 (436)
Q Consensus 278 ~~--~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~-~v~~~~~~~~~~~~r~~~~~~~~~-g~lyv~gg~~~~i~~yd~~ 353 (436)
-+ .|.-.+-||.+ .++.+||+..+.=. .+..... ....+-..+ ..+.+--+-.+.+..||++
T Consensus 114 ~fd~~G~rlaSGskD------t~IIvwDlV~E~Gl~rL~GHkd--------~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 114 KFDKIGTRLASGSKD------TDIIVWDLVGEEGLFRLRGHKD--------SITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred EEcccCceEeecCCC------ccEEEEEeccceeeEEeecchH--------HHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 11 34455666644 35788888655311 0111000 000112233 5555555556789999999
Q ss_pred CCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCC
Q 013797 354 SNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSD 408 (436)
Q Consensus 354 ~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d 408 (436)
+..-.+.- +- ....-++++ ..+ ++.|.+|.+ ..+.+|.+..+.|
T Consensus 180 tqhCf~Th-vd---~r~Eiw~l~--~~~-~~lvt~~~d----se~~v~~L~~~~D 223 (888)
T KOG0306|consen 180 TQHCFETH-VD---HRGEIWALV--LDE-KLLVTAGTD----SELKVWELAFEDD 223 (888)
T ss_pred cceeeeEE-ec---ccceEEEEE--Eec-ceEEEEecC----CceEEEEeecccc
Confidence 98766542 21 112223333 444 666766665 3677887766554
No 201
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=43.04 E-value=3.5e+02 Score=26.86 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=61.8
Q ss_pred EECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcC-CCCCCCCCCCCCCCCEEE-EECCEEEEEecCCCeEEEEECCCC
Q 013797 278 YMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIP-DILKDFPAETGKSPPLIA-VVNNELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 278 ~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~-~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~~~~i~~yd~~~~ 355 (436)
-.+|.+.+.||.+..+ -++|+.++.=..+- ... ..-.++. .-+|.....|+..+.+.+||+...
T Consensus 312 ~~DGSL~~tGGlD~~~------RvWDlRtgr~im~L~gH~--------k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLG------RVWDLRTGRCIMFLAGHI--------KEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred cCCCceeeccCccchh------heeecccCcEEEEecccc--------cceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 4589999999977654 56777766533221 111 0011111 226777777888888899988643
Q ss_pred cEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCCCCCccCcEEee
Q 013797 356 SWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSSDAGELQWRLLE 418 (436)
Q Consensus 356 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~d~~~~~W~~l~ 418 (436)
.= +-.+|. .......+.+-...|..++..+++ +.+.+|+ +..|..+.
T Consensus 378 ~~--ly~ipA--H~nlVS~Vk~~p~~g~fL~TasyD----~t~kiWs--------~~~~~~~k 424 (459)
T KOG0272|consen 378 SE--LYTIPA--HSNLVSQVKYSPQEGYFLVTASYD----NTVKIWS--------TRTWSPLK 424 (459)
T ss_pred cc--ceeccc--ccchhhheEecccCCeEEEEcccC----cceeeec--------CCCcccch
Confidence 21 333342 111122233223467777877777 3566773 22676665
No 202
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=42.34 E-value=2.4e+02 Score=24.76 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=41.4
Q ss_pred CeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEe--CCEEEEEcee----cCCCeEEEEECCCCCEEeCCCCCCCC
Q 013797 152 SSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCA--GTHLIVSGNE----IEGGVIWRYELETNNWFKGPSMRRPR 222 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~----~~~~~v~~ydp~t~~W~~l~~~p~~r 222 (436)
..+|.+|...+.|..|---+.+..+.. .-+.-+ ...++++|.. ..+..+|+||+.|++-..+-+.....
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sP--K~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkk 162 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSP--KYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKK 162 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCC--ceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccc
Confidence 578889988888876633332211111 013333 3345556532 23478999999999998887765433
No 203
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=42.13 E-value=3.7e+02 Score=26.87 Aligned_cols=112 Identities=10% Similarity=0.131 Sum_probs=64.2
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCC
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLP 265 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~ 265 (436)
+|.|+..| .....+-+||..+.. .+..+|..-.-.....+ ++--|++-+.++ ..+.++|++... ..+
T Consensus 358 DgLifgtg--t~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add------~~V~lwDLRKl~--n~k 425 (506)
T KOG0289|consen 358 DGLIFGTG--TPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD------GSVKLWDLRKLK--NFK 425 (506)
T ss_pred CceEEecc--CCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC------CeEEEEEehhhc--ccc
Confidence 67777665 345678899988776 55555543222233333 333333333332 138889988665 222
Q ss_pred CCccCCc-ceeEEEE--CCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCC
Q 013797 266 GMRQRRK-LCSGCYM--DNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDIL 316 (436)
Q Consensus 266 ~~p~~r~-~~~~~~~--~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~ 316 (436)
..+.+-. ......+ .|...+++| ..-.|+.|+-.+..|+++....
T Consensus 426 t~~l~~~~~v~s~~fD~SGt~L~~~g------~~l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQSGTYLGIAG------SDLQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred eeeccccccceeEEEcCCCCeEEeec------ceeEEEEEecccccceeeehhh
Confidence 2222221 2223333 356667775 3446788899999999998776
No 204
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.21 E-value=3.7e+02 Score=26.68 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=71.6
Q ss_pred eEEEEECCCCCEEeCCCCCCCCcccEEEEe-CCEEEEEcCcCCCCCCccceEEEEeCCCC---CeEeCCCCccCCcceeE
Q 013797 201 VIWRYELETNNWFKGPSMRRPRCLFASATC-GTFAFVAGGHGMDGSGVLNSAERYNPETK---SWDSLPGMRQRRKLCSG 276 (436)
Q Consensus 201 ~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~---~W~~~~~~p~~r~~~~~ 276 (436)
.+..+|..|+.-+..-+-..+....+++-+ ++.-+|.|+.+. .+...|...+ .|+-+.. ++-..-+
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr-------~i~~wdlDgn~~~~W~gvr~---~~v~dla 361 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR-------TIIMWDLDGNILGNWEGVRD---PKVHDLA 361 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC-------cEEEecCCcchhhccccccc---ceeEEEE
Confidence 477777777765444322223333334433 777788887552 3566666543 5876643 3333333
Q ss_pred EEECCE-EEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEE-EECCEEEEEecCCCeEEEEECCC
Q 013797 277 CYMDNK-FYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIA-VVNNELYSLETSSNELRVYLKDS 354 (436)
Q Consensus 277 ~~~~g~-iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~~~~i~~yd~~~ 354 (436)
...+|+ ++.++ .-..+..|+.++..=..+-..- . ..+... .-++++.++.-...++..||.+
T Consensus 362 it~Dgk~vl~v~-------~d~~i~l~~~e~~~dr~lise~------~--~its~~iS~d~k~~LvnL~~qei~LWDl~- 425 (519)
T KOG0293|consen 362 ITYDGKYVLLVT-------VDKKIRLYNREARVDRGLISEE------Q--PITSFSISKDGKLALVNLQDQEIHLWDLE- 425 (519)
T ss_pred EcCCCcEEEEEe-------cccceeeechhhhhhhcccccc------C--ceeEEEEcCCCcEEEEEcccCeeEEeecc-
Confidence 444665 55554 1234566666554322111110 0 011122 3367888887777899999998
Q ss_pred CcEEEcc
Q 013797 355 NSWKNLG 361 (436)
Q Consensus 355 ~~W~~v~ 361 (436)
.|+.+.
T Consensus 426 -e~~lv~ 431 (519)
T KOG0293|consen 426 -ENKLVR 431 (519)
T ss_pred -hhhHHH
Confidence 566653
No 205
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.49 E-value=3.3e+02 Score=25.92 Aligned_cols=88 Identities=13% Similarity=-0.042 Sum_probs=51.7
Q ss_pred CCCcccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCc--ceeEEEECCE-EEEEeccCCCCC
Q 013797 220 RPRCLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRK--LCSGCYMDNK-FYVIGGRNEKDK 294 (436)
Q Consensus 220 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~g~-iyv~gG~~~~~~ 294 (436)
.|-..|+++.. ...+.+|+-.- -....+||+.+++=...-..+..|. +|++..-+|+ ||..-. +-..
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRP------G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn-d~~~- 74 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRP------GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN-DYET- 74 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCC------CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecc-ccCC-
Confidence 34445666665 35666665433 2358899999987543323344553 5666666666 454432 2211
Q ss_pred cCCEEEEEECCCCcEEEcCCCC
Q 013797 295 PLTCGEAYDEYAGTWYHIPDIL 316 (436)
Q Consensus 295 ~~~~v~~yD~~~~~W~~v~~~~ 316 (436)
....|-+||.. +...++...+
T Consensus 75 g~G~IgVyd~~-~~~~ri~E~~ 95 (305)
T PF07433_consen 75 GRGVIGVYDAA-RGYRRIGEFP 95 (305)
T ss_pred CcEEEEEEECc-CCcEEEeEec
Confidence 34567899998 6666666555
No 206
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=40.41 E-value=4e+02 Score=26.78 Aligned_cols=151 Identities=9% Similarity=-0.046 Sum_probs=78.0
Q ss_pred CeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEE-ceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEe
Q 013797 152 SSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVS-GNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATC 230 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~-GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~ 230 (436)
...+..|..++.-..+...+..-... ..+-+|.-+++ .-......+|++|..+++-.++......-...+..--
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P-----~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAP-----AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCc-----cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCC
Confidence 56777777776655544432221111 12333433333 3333456899999999884443332211111111222
Q ss_pred CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCc-E
Q 013797 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT-W 309 (436)
Q Consensus 231 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~-W 309 (436)
+.+|+......+ ..+++++|++..+=+.+..-.... ......-+|+.+++-+.. .+ ...+..+|+.++. |
T Consensus 293 G~~ivf~Sdr~G-----~p~I~~~~~~g~~~~riT~~~~~~-~~p~~SpdG~~i~~~~~~-~g--~~~i~~~~~~~~~~~ 363 (425)
T COG0823 293 GSKIVFTSDRGG-----RPQIYLYDLEGSQVTRLTFSGGGN-SNPVWSPDGDKIVFESSS-GG--QWDIDKNDLASGGKI 363 (425)
T ss_pred CCEEEEEeCCCC-----CcceEEECCCCCceeEeeccCCCC-cCccCCCCCCEEEEEecc-CC--ceeeEEeccCCCCcE
Confidence 445555533322 347999999887655442211111 122333466666665533 11 1668899998877 8
Q ss_pred EEcCCCC
Q 013797 310 YHIPDIL 316 (436)
Q Consensus 310 ~~v~~~~ 316 (436)
+.+..-.
T Consensus 364 ~~lt~~~ 370 (425)
T COG0823 364 RILTSTY 370 (425)
T ss_pred EEccccc
Confidence 8877543
No 207
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=40.23 E-value=2.5e+02 Score=26.41 Aligned_cols=82 Identities=18% Similarity=0.119 Sum_probs=43.6
Q ss_pred CeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEe-C-------CEEEEEceecCCCeEEEEECCCCC-EEeCCCCCCCC
Q 013797 152 SSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCA-G-------THLIVSGNEIEGGVIWRYELETNN-WFKGPSMRRPR 222 (436)
Q Consensus 152 ~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~-~-------~~iyv~GG~~~~~~v~~ydp~t~~-W~~l~~~p~~r 222 (436)
..+..||..+++-.+.-.+|..-....+......+ . +.+|+..- ....+.+||..+++ |+.+.....+.
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~--~~~glIV~dl~~~~s~Rv~~~~~~~~ 111 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS--GGPGLIVYDLATGKSWRVLHNSFSPD 111 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET--TTCEEEEEETTTTEEEEEETCGCTTS
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC--CcCcEEEEEccCCcEEEEecCCccee
Confidence 56788999998865444444332221111112222 1 47787632 23479999999976 77776644444
Q ss_pred cccEEEEeCCEEE
Q 013797 223 CLFASATCGTFAF 235 (436)
Q Consensus 223 ~~~~~~~~~~~iy 235 (436)
..+....+++..+
T Consensus 112 p~~~~~~i~g~~~ 124 (287)
T PF03022_consen 112 PDAGPFTIGGESF 124 (287)
T ss_dssp -SSEEEEETTEEE
T ss_pred ccccceeccCceE
Confidence 3334444455443
No 208
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=38.30 E-value=6.1e+02 Score=28.33 Aligned_cols=127 Identities=11% Similarity=0.003 Sum_probs=74.4
Q ss_pred eEEEEECCC-CCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCC-eEeCCCCccCCcceeEEE
Q 013797 201 VIWRYELET-NNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKS-WDSLPGMRQRRKLCSGCY 278 (436)
Q Consensus 201 ~v~~ydp~t-~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~r~~~~~~~ 278 (436)
.+.+|.-.. ++-+.+..+...-.-.+.+.++|++.+.=| ..+..|+-.+++ -+.-.....+-..-..-+
T Consensus 808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In---------~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v 878 (1096)
T KOG1897|consen 808 RIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGIN---------QSVRLYEWTTERELRIECNISNPIIALDLQV 878 (1096)
T ss_pred eEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecC---------cEEEEEEccccceehhhhcccCCeEEEEEEe
Confidence 444554444 777777777766666777888888765422 357788766651 111111111111112234
Q ss_pred ECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeE
Q 013797 279 MDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNEL 347 (436)
Q Consensus 279 ~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i 347 (436)
.++.|+|-.-. ..-.+..|+...+...+++.=. .+++-.++..+++..|+.+...+.+
T Consensus 879 ~gdeI~VgDlm-----~Sitll~y~~~eg~f~evArD~------~p~Wmtaveil~~d~ylgae~~gNl 936 (1096)
T KOG1897|consen 879 KGDEIAVGDLM-----RSITLLQYKGDEGNFEEVARDY------NPNWMTAVEILDDDTYLGAENSGNL 936 (1096)
T ss_pred cCcEEEEeecc-----ceEEEEEEeccCCceEEeehhh------CccceeeEEEecCceEEeecccccE
Confidence 46777664321 2345688999999999888543 4555556667788888876544443
No 209
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=38.24 E-value=4.3e+02 Score=26.54 Aligned_cols=58 Identities=7% Similarity=0.037 Sum_probs=29.1
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEE-eCCEEEEEcCcCC
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASAT-CGTFAFVAGGHGM 242 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 242 (436)
+++.+..-|+++|. ....+|+|...|+.--.+- +.+-+.--.... -++..++.||.++
T Consensus 87 l~s~n~G~~l~ag~-i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 87 LASSNLGYFLLAGT-ISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eecCCCceEEEeec-ccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCc
Confidence 44555556666652 2346888888887532221 011111111122 2667777777664
No 210
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=35.29 E-value=5.6e+02 Score=27.06 Aligned_cols=88 Identities=8% Similarity=0.104 Sum_probs=45.6
Q ss_pred EECCEEEEEecCCCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCC-EEEEEcCCCCCCCCcEEEEeecCCCCCC
Q 013797 332 VVNNELYSLETSSNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGN-ELLVIGASSTSSHESMAIYTCCPSSDAG 410 (436)
Q Consensus 332 ~~~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~y~~~p~~d~~ 410 (436)
.+.....+.|.+.+.|..||....+-.+- .. .....-.++++.++ .-++.+|.+ ..+--|...+ .
T Consensus 212 ~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS--~~----~h~adVl~Lav~~~~d~vfsaGvd----~~ii~~~~~~----~ 277 (691)
T KOG2048|consen 212 FLRDSTIASGDSAGTVTFWDSIFGTLIQS--HS----CHDADVLALAVADNEDRVFSAGVD----PKIIQYSLTT----N 277 (691)
T ss_pred EeecCcEEEecCCceEEEEcccCcchhhh--hh----hhhcceeEEEEcCCCCeEEEccCC----CceEEEEecC----C
Confidence 44555556667789999999987543221 11 11111223333332 344455555 2444454333 2
Q ss_pred ccCcEEeecCCCCCCceeeeeEEe
Q 013797 411 ELQWRLLECGKRPLSHFIHNCSVM 434 (436)
Q Consensus 411 ~~~W~~l~~~~~~~~~~~~~~~~~ 434 (436)
+.+|..... ....++..++.+++
T Consensus 278 ~~~wv~~~~-r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 278 KSEWVINSR-RDLHAHDVRSMAVI 300 (691)
T ss_pred ccceeeecc-ccCCcccceeeeee
Confidence 336977663 34666677666665
No 211
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.74 E-value=3.9e+02 Score=28.50 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=54.2
Q ss_pred EEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEe
Q 013797 184 LCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDS 263 (436)
Q Consensus 184 ~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~ 263 (436)
..+-+.-|++.| .....+-.||..++.-.++=.= +.+.-.+++..-...|++.|... ..+.++|..+++=
T Consensus 542 ~FHPNs~Y~aTG-SsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed------~~I~iWDl~~~~~-- 611 (707)
T KOG0263|consen 542 SFHPNSNYVATG-SSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDED------GLIKIWDLANGSL-- 611 (707)
T ss_pred EECCcccccccC-CCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccC------CcEEEEEcCCCcc--
Confidence 344556677766 3456778888877765444211 11112233333233444444332 2378889887642
Q ss_pred CCCCccCC--cceeEEEECCEEEEEeccCCCCCcCCEEEEEECC
Q 013797 264 LPGMRQRR--KLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEY 305 (436)
Q Consensus 264 ~~~~p~~r--~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~ 305 (436)
+..+.... ...-....+|.+.+.||.+ ++|-.+|..
T Consensus 612 v~~l~~Ht~ti~SlsFS~dg~vLasgg~D------nsV~lWD~~ 649 (707)
T KOG0263|consen 612 VKQLKGHTGTIYSLSFSRDGNVLASGGAD------NSVRLWDLT 649 (707)
T ss_pred hhhhhcccCceeEEEEecCCCEEEecCCC------CeEEEEEch
Confidence 11111111 1112234589999999843 456677754
No 212
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=33.09 E-value=4.3e+02 Score=25.06 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCEEEEEceecCCCeEEE-EECCCCCEEeCCCCCCCCcccEEEEe-------CCEEEEEcCcCCCCCCccceEEEEeCCC
Q 013797 187 GTHLIVSGNEIEGGVIWR-YELETNNWFKGPSMRRPRCLFASATC-------GTFAFVAGGHGMDGSGVLNSAERYNPET 258 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~-ydp~t~~W~~l~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~yd~~t 258 (436)
+|..++.||.+..--+|. |.-..|.|..- .|+.++. ++.|+-.| . -+.+..+|.++
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~g-t-------Dk~v~~wD~~t 121 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCG-T-------DKTVRGWDAET 121 (338)
T ss_pred CCCeEeecCCcceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEec-C-------CceEEEEeccc
Confidence 555666666544333443 44556666543 4555443 23454443 2 24688899998
Q ss_pred CCe
Q 013797 259 KSW 261 (436)
Q Consensus 259 ~~W 261 (436)
++=
T Consensus 122 G~~ 124 (338)
T KOG0265|consen 122 GKR 124 (338)
T ss_pred cee
Confidence 864
No 213
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=32.99 E-value=6.6e+02 Score=27.14 Aligned_cols=181 Identities=12% Similarity=0.063 Sum_probs=92.1
Q ss_pred CEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCC
Q 013797 188 THLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGM 267 (436)
Q Consensus 188 ~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 267 (436)
|.-..+|+.. ...+.+|+-.+++...-..-..++.......-+|.+.+.|+.++ .+-+||..++.....-
T Consensus 319 GDWiA~g~~k-lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-------KVKvWn~~SgfC~vTF-- 388 (893)
T KOG0291|consen 319 GDWIAFGCSK-LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-------KVKVWNTQSGFCFVTF-- 388 (893)
T ss_pred CCEEEEcCCc-cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-------cEEEEeccCceEEEEe--
Confidence 5555565432 34677887666654332222223322222223778888887653 3778888776543221
Q ss_pred ccCCcceeEE--EECCEEEEEeccCCCCCcCCEEEEEECCCCc-EEEcCCCCCCCCCCCCCCCCEEEEEC--CEEEEEec
Q 013797 268 RQRRKLCSGC--YMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT-WYHIPDILKDFPAETGKSPPLIAVVN--NELYSLET 342 (436)
Q Consensus 268 p~~r~~~~~~--~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~-W~~v~~~~~~~~~~~~r~~~~~~~~~--g~lyv~gg 342 (436)
...-.+.+++ ...|+..+....+ ..|-++|+..-+ .+.... | .+. -...+.+| |.|.+.|+
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLD------GtVRAwDlkRYrNfRTft~-P------~p~-QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLD------GTVRAWDLKRYRNFRTFTS-P------EPI-QFSCVAVDPSGELVCAGA 454 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecC------CeEEeeeecccceeeeecC-C------Cce-eeeEEEEcCCCCEEEeec
Confidence 1111223332 2355555544333 246778876653 333322 2 222 22344555 88888886
Q ss_pred C-CCeEEEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEE
Q 013797 343 S-SNELRVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIY 401 (436)
Q Consensus 343 ~-~~~i~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y 401 (436)
. .-+|++|+.+|++-..+=.--+. ..+++.+ ...+.+++-|-++ .++.+|
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEg----PVs~l~f-~~~~~~LaS~SWD----kTVRiW 505 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEG----PVSGLSF-SPDGSLLASGSWD----KTVRIW 505 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCC----cceeeEE-ccccCeEEecccc----ceEEEE
Confidence 4 34799999999876665211111 1122333 2334466666666 345555
No 214
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=32.84 E-value=1.1e+02 Score=18.56 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=16.8
Q ss_pred CEEEEEecCCCeEEEEECCCC--cEEEc
Q 013797 335 NELYSLETSSNELRVYLKDSN--SWKNL 360 (436)
Q Consensus 335 g~lyv~gg~~~~i~~yd~~~~--~W~~v 360 (436)
|+||+- ...+.++++|.+++ .|+.-
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEEEEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEEeee
Confidence 345555 55678888888876 47764
No 215
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=31.36 E-value=4.1e+02 Score=24.24 Aligned_cols=190 Identities=11% Similarity=0.079 Sum_probs=87.1
Q ss_pred eCCEEEEEc--eecC----CCeE-EEEECC-CCCEEeCCCCCCC------CcccE--EEEeCCEEEEEcCcCCCCCCccc
Q 013797 186 AGTHLIVSG--NEIE----GGVI-WRYELE-TNNWFKGPSMRRP------RCLFA--SATCGTFAFVAGGHGMDGSGVLN 249 (436)
Q Consensus 186 ~~~~iyv~G--G~~~----~~~v-~~ydp~-t~~W~~l~~~p~~------r~~~~--~~~~~~~iyv~GG~~~~~~~~~~ 249 (436)
.+|.|+++- +... ...+ +..... -.+|.....++.. ..... +..-++.+++.. +..... ...
T Consensus 57 ~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~~-~~~ 134 (275)
T PF13088_consen 57 PDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHESGG-SFS 134 (275)
T ss_dssp TTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEESSC-EEE
T ss_pred CCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eecccc-Ccc
Confidence 388888774 2111 1121 244443 3469876543211 11112 333477887772 111111 122
Q ss_pred eEEEEeCC-CCCeEeCCCCccC-Ccce-eEEE-ECCEEEEEeccCCCCCcCCEEEEEECCC-CcEEEcC--CCCCCCCCC
Q 013797 250 SAERYNPE-TKSWDSLPGMRQR-RKLC-SGCY-MDNKFYVIGGRNEKDKPLTCGEAYDEYA-GTWYHIP--DILKDFPAE 322 (436)
Q Consensus 250 ~~~~yd~~-t~~W~~~~~~p~~-r~~~-~~~~-~~g~iyv~gG~~~~~~~~~~v~~yD~~~-~~W~~v~--~~~~~~~~~ 322 (436)
....|... -.+|+.....+.. .... +.+. -+|.|+++--.. .. ....+.+.... .+|+... .++
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~--~~~~~~~S~D~G~TWs~~~~~~~~------ 205 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN--DDIYISRSTDGGRTWSPPQPTNLP------ 205 (275)
T ss_dssp EEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS--TEEEEEEESSTTSS-EEEEEEECS------
T ss_pred eEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC--CcEEEEEECCCCCcCCCceecccC------
Confidence 34445544 4469887655322 2222 2222 377898886443 11 13344555543 3899855 233
Q ss_pred CCCCCCEEEEE-CCEEEEEecC---CCeE--EEEECCCCcEEEcccCCCccCCCCCceEEEEEeCCEEEE
Q 013797 323 TGKSPPLIAVV-NNELYSLETS---SNEL--RVYLKDSNSWKNLGLVPVRADFNRGWGIAFKSLGNELLV 386 (436)
Q Consensus 323 ~~r~~~~~~~~-~g~lyv~gg~---~~~i--~~yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v 386 (436)
.......++.. +|+++++... ...+ ..-.-...+|.....+........++......-+|+|+|
T Consensus 206 ~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 206 NPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp SCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 22223333332 5688777652 1223 222334678998765543321222333333244578886
No 216
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=30.99 E-value=3.1e+02 Score=27.11 Aligned_cols=236 Identities=11% Similarity=-0.027 Sum_probs=98.4
Q ss_pred CCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEE
Q 013797 150 GDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASAT 229 (436)
Q Consensus 150 ~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~ 229 (436)
+....+..|..+++-.+|...+....+.. .++.-+..+|-+- ....++..|+.|.+=+.+-..|.........+
T Consensus 58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~---~~s~~~~~~~Yv~---~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v 131 (386)
T PF14583_consen 58 GNRNLYLLDLATGEITQLTDGPGDNTFGG---FLSPDDRALYYVK---NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWV 131 (386)
T ss_dssp SS-EEEEEETTT-EEEE---SS-B-TTT----EE-TTSSEEEEEE---TTTEEEEEETTT--EEEEEE--TTEEEEEEEE
T ss_pred CCcceEEEEcccCEEEECccCCCCCccce---EEecCCCeEEEEE---CCCeEEEEECCcCcEEEEEECCccccccccee
Confidence 45788999999999999987665433322 1233355654331 22478999999998777766665544333333
Q ss_pred e--CCEEEEEcCc---CCC------------CCCccceEEEEeCCCCCeEeCCCCccCCcceeEEE-ECCE--EEEEec-
Q 013797 230 C--GTFAFVAGGH---GMD------------GSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCY-MDNK--FYVIGG- 288 (436)
Q Consensus 230 ~--~~~iyv~GG~---~~~------------~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~--iyv~gG- 288 (436)
. ++..++.--. +.. .......+...|+.+++.+.+-.-.. ..+|.... .+.. +|+--|
T Consensus 132 ~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~~fsP~dp~li~fCHEGp 210 (386)
T PF14583_consen 132 ANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGHVQFSPTDPTLIMFCHEGP 210 (386)
T ss_dssp E-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEEEEEETTEEEEEEEEE-S-
T ss_pred eCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccCcccCCCCCCEEEEeccCC
Confidence 2 2333221110 000 01133456677888877665521110 00111110 1222 344433
Q ss_pred cCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEEEe----cCCCeEEEEECCCCcEEEcccC
Q 013797 289 RNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN-ELYSLE----TSSNELRVYLKDSNSWKNLGLV 363 (436)
Q Consensus 289 ~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~g----g~~~~i~~yd~~~~~W~~v~~~ 363 (436)
.+. .-..||..|........+..... .-..+|-.-..+| .|+..+ +...-|..||+++..=+.+..+
T Consensus 211 w~~---Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~ 282 (386)
T PF14583_consen 211 WDL---VDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM 282 (386)
T ss_dssp TTT---SS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE
T ss_pred cce---eceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC
Confidence 221 22368888887766666643221 1122333334455 333332 2233588899998754444445
Q ss_pred CCccCCCCCceEEEEEeCCEEEEEcCCCC-CC---------CCcEEEEeecCCC
Q 013797 364 PVRADFNRGWGIAFKSLGNELLVIGASST-SS---------HESMAIYTCCPSS 407 (436)
Q Consensus 364 p~~~~~~~~~~~~~~~~~~~l~v~GG~~~-~~---------~~~~~~y~~~p~~ 407 (436)
|. .. .-....+++|++=-|.+. .. .....+|.++++.
T Consensus 283 p~-----~~--H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 283 PW-----CS--HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp -S-----EE--EEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred Cc-----ee--eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 42 22 233367888887766542 11 1234677677665
No 217
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=30.00 E-value=4.4e+02 Score=24.19 Aligned_cols=159 Identities=9% Similarity=-0.017 Sum_probs=0.0
Q ss_pred eeEEeCCEEEEEceecCC-CeEEEEECCCCC-EEeCCCCCCCC-----------cccEEEEeCCEEEEEcCcCCCCCCcc
Q 013797 182 ESLCAGTHLIVSGNEIEG-GVIWRYELETNN-WFKGPSMRRPR-----------CLFASATCGTFAFVAGGHGMDGSGVL 248 (436)
Q Consensus 182 ~~~~~~~~iyv~GG~~~~-~~v~~ydp~t~~-W~~l~~~p~~r-----------~~~~~~~~~~~iyv~GG~~~~~~~~~ 248 (436)
.++..++..|+++..... ..+.++....-. |+......... -...+...+++.|++-..........
T Consensus 14 ~i~~~~~~yY~~~t~~~~~~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~~g~yy~y~~~~~~~~~~~ 93 (286)
T PF04616_consen 14 SIVRFGDGYYLYGTTDPEGPGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYINGKYYMYYSDSGGDAGSG 93 (286)
T ss_dssp EEEEETTEEEEEEEEBTCESBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEEETTEEEEEEEEESTSTTEE
T ss_pred EEEEECCEEEEEEEcCCCCCeEEEEECCCCcccccceeeecccccccccccccccCCeEEEcCCeEEEEEEccCCCCCcc
Q ss_pred ceEEEEeCCCCCeEeCCCC---ccCCcceeEEEEC-CEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCC-
Q 013797 249 NSAERYNPETKSWDSLPGM---RQRRKLCSGCYMD-NKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAET- 323 (436)
Q Consensus 249 ~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~-g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~- 323 (436)
..+..-+...+.|+....+ .......+....+ |+.|++-+..........+..-.+..+.+..............
T Consensus 94 ~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~ 173 (286)
T PF04616_consen 94 IGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDGTSLTGEPVVVIFPGDE 173 (286)
T ss_dssp EEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTTSSEEEEECEEEEEESG
T ss_pred eeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCccccccCccccccccccc
Q ss_pred -----CCCCCEEEEECCEEEEE
Q 013797 324 -----GKSPPLIAVVNNELYSL 340 (436)
Q Consensus 324 -----~r~~~~~~~~~g~lyv~ 340 (436)
...++.+...+|..|++
T Consensus 174 ~~~~~~~Egp~~~k~~g~yYl~ 195 (286)
T PF04616_consen 174 GWDGGVVEGPFVFKHGGKYYLF 195 (286)
T ss_dssp SSTTTBEEEEEEEEETTEEEEE
T ss_pred ccCCccccceEEEEcCCCEEEE
No 218
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=28.89 E-value=4.4e+02 Score=26.58 Aligned_cols=190 Identities=9% Similarity=-0.027 Sum_probs=0.0
Q ss_pred EEeccCCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcc
Q 013797 145 FMLASGDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCL 224 (436)
Q Consensus 145 ~~~~~~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~ 224 (436)
++...-...+..+|..+++...-......+.... .-..+.++++.|| ....+..||..+++ -..-+.
T Consensus 273 fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvk----f~pd~~n~fl~G~--sd~ki~~wDiRs~k-------vvqeYd 339 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVK----FHPDNQNIFLVGG--SDKKIRQWDIRSGK-------VVQEYD 339 (503)
T ss_pred eeeeecceeeeeeccccceEEEEEecCCCceeee----cCCCCCcEEEEec--CCCcEEEEeccchH-------HHHHHH
Q ss_pred cEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEE-CCEEEEEeccCCCCCcCCEEEEEE
Q 013797 225 FASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYM-DNKFYVIGGRNEKDKPLTCGEAYD 303 (436)
Q Consensus 225 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD 303 (436)
+-+..+....|+-+|..........++.+++-....=.+.-.-+.....++...+ +++.++.-- ..+.+.+|.
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs------~dN~i~ifs 413 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS------MDNYIAIFS 413 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc------cCceEEEEe
Q ss_pred CCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCC
Q 013797 304 EYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYLKDS 354 (436)
Q Consensus 304 ~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd~~~ 354 (436)
.......-..-........+...-.-+.-||..++.|...+.++.||-++
T Consensus 414 -~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 414 -TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred -cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
No 219
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.94 E-value=5.3e+02 Score=24.52 Aligned_cols=143 Identities=10% Similarity=0.028 Sum_probs=75.9
Q ss_pred EeccCCCeEEEEecCCCC----eEeCCCCCCCCCccCCCeeeE---EeCCEEEEEceecCC-CeEEEEECCCCCEEeCCC
Q 013797 146 MLASGDSSWWAFDRHFQT----RRKLPELPSDPCFKLGDKESL---CAGTHLIVSGNEIEG-GVIWRYELETNNWFKGPS 217 (436)
Q Consensus 146 ~~~~~~~~~~~~dp~~~~----W~~l~~~~~~~~~~~~~~~~~---~~~~~iyv~GG~~~~-~~v~~ydp~t~~W~~l~~ 217 (436)
.|...-.+++.||..+++ |..--.-+..- .+.-+-. -.++.|++.=++... --+|..|..+++=+++..
T Consensus 72 dF~NKYSHVH~yd~e~~~VrLLWkesih~~~~W---aGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~ 148 (339)
T PF09910_consen 72 DFRNKYSHVHEYDTENDSVRLLWKESIHDKTKW---AGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSS 148 (339)
T ss_pred EEeeccceEEEEEcCCCeEEEEEecccCCcccc---ccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccC
Confidence 344455788899988766 54422222111 1100111 235566665332111 357888889999998877
Q ss_pred CCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCe--EeCCCC------c-cCCcceeEEEECCEEEEEec
Q 013797 218 MRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW--DSLPGM------R-QRRKLCSGCYMDNKFYVIGG 288 (436)
Q Consensus 218 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W--~~~~~~------p-~~r~~~~~~~~~g~iyv~gG 288 (436)
-|.+.. +.+.+..+|-+ .... .-...+.+||+.+++| +..+.- + ..+..-.++.+.+++|.+-+
T Consensus 149 ~ps~KG---~~~~D~a~F~i--~~~~--~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~r 221 (339)
T PF09910_consen 149 NPSLKG---TLVHDYACFGI--NNFH--KGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVR 221 (339)
T ss_pred CCCcCc---eEeeeeEEEec--cccc--cCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEe
Confidence 665532 22233333322 1111 1467899999999999 433211 1 11223345667778777621
Q ss_pred cCCCCCcCCEEEEEECCC
Q 013797 289 RNEKDKPLTCGEAYDEYA 306 (436)
Q Consensus 289 ~~~~~~~~~~v~~yD~~~ 306 (436)
..+.+.||..
T Consensus 222 --------GGi~vgnP~~ 231 (339)
T PF09910_consen 222 --------GGIFVGNPYN 231 (339)
T ss_pred --------ccEEEeCCCC
Confidence 1357777763
No 220
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.29 E-value=5.2e+02 Score=24.14 Aligned_cols=129 Identities=17% Similarity=0.175 Sum_probs=68.6
Q ss_pred CCeEEEEECCCCC--EEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCC--CeEeCCCCccCCcce
Q 013797 199 GGVIWRYELETNN--WFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETK--SWDSLPGMRQRRKLC 274 (436)
Q Consensus 199 ~~~v~~ydp~t~~--W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~r~~~ 274 (436)
...+..-|+.+++ |+.+ ...|...++.++++. .|+|-+++ -++..+..|+ -|.....-.. ...
T Consensus 32 s~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~g-------~lYfl~~~tGs~~w~f~~~~~v--k~~ 98 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYSG-------GLYFLCVKTGSQIWNFVILETV--KVR 98 (354)
T ss_pred CceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEccC-------cEEEEEecchhheeeeeehhhh--ccc
Confidence 3467778998886 8765 335666666677776 56665543 2566666666 3764421111 111
Q ss_pred eEEEE-CCEEEEEeccCCCCCcCCEEEEEECCCCc--EEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEE
Q 013797 275 SGCYM-DNKFYVIGGRNEKDKPLTCGEAYDEYAGT--WYHIPDILKDFPAETGKSPPLIAVVNNELYSLETSSNELRVYL 351 (436)
Q Consensus 275 ~~~~~-~g~iyv~gG~~~~~~~~~~v~~yD~~~~~--W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~~~~i~~yd 351 (436)
+.+-. .|.||+ |..++ ..++.|+.+.. |. ...+. .-...+.+...++.||+.- ..+.+.+-.
T Consensus 99 a~~d~~~glIyc-gshd~------~~yalD~~~~~cVyk--skcgG-----~~f~sP~i~~g~~sly~a~-t~G~vlavt 163 (354)
T KOG4649|consen 99 AQCDFDGGLIYC-GSHDG------NFYALDPKTYGCVYK--SKCGG-----GTFVSPVIAPGDGSLYAAI-TAGAVLAVT 163 (354)
T ss_pred eEEcCCCceEEE-ecCCC------cEEEecccccceEEe--cccCC-----ceeccceecCCCceEEEEe-ccceEEEEc
Confidence 22222 344444 44332 35778877663 44 22221 1123344555577888763 235566666
Q ss_pred CCCC
Q 013797 352 KDSN 355 (436)
Q Consensus 352 ~~~~ 355 (436)
+++.
T Consensus 164 ~~~~ 167 (354)
T KOG4649|consen 164 KNPY 167 (354)
T ss_pred cCCC
Confidence 6544
No 221
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=26.93 E-value=6.6e+02 Score=25.25 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=75.8
Q ss_pred eEEeCCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEE-EEe--CCEEEEEcCcCCCCCCccceEEEEeCCCC
Q 013797 183 SLCAGTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFAS-ATC--GTFAFVAGGHGMDGSGVLNSAERYNPETK 259 (436)
Q Consensus 183 ~~~~~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~-~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 259 (436)
+++.++..+++||. +..+.+|++.|.+-.+. +...|..... +.. -+.+|..+- ..++-+++.+..
T Consensus 209 avS~Dgkylatgg~--d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~--------Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 209 AVSSDGKYLATGGR--DRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA--------DRSVKVWSIDQL 276 (479)
T ss_pred EEcCCCcEEEecCC--CceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec--------CCceEEEehhHh
Confidence 44568888888875 35678898887764443 3333332222 222 234555432 223555555544
Q ss_pred CeEeC-CCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEE
Q 013797 260 SWDSL-PGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELY 338 (436)
Q Consensus 260 ~W~~~-~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~ly 338 (436)
+..+. -.-+...... .+...++...+||.+. ++..|++...+= .+-.. ..-+.-+++.++..-|
T Consensus 277 s~vetlyGHqd~v~~I-daL~reR~vtVGgrDr------T~rlwKi~eesq-lifrg-------~~~sidcv~~In~~Hf 341 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGI-DALSRERCVTVGGRDR------TVRLWKIPEESQ-LIFRG-------GEGSIDCVAFINDEHF 341 (479)
T ss_pred HHHHHHhCCccceeee-chhcccceEEeccccc------eeEEEeccccce-eeeeC-------CCCCeeeEEEecccce
Confidence 33211 0001111000 1223466777888653 345666533321 11111 1112335678898889
Q ss_pred EEecCCCeEEEEECCCCc
Q 013797 339 SLETSSNELRVYLKDSNS 356 (436)
Q Consensus 339 v~gg~~~~i~~yd~~~~~ 356 (436)
+.|...+.|..|+..++.
T Consensus 342 vsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLLKKK 359 (479)
T ss_pred eeccCCceEEEeeecccC
Confidence 999888899988876653
No 222
>PTZ00420 coronin; Provisional
Probab=26.00 E-value=7.9e+02 Score=25.81 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=18.5
Q ss_pred CCEEEEEecCCCeEEEEECCCCc
Q 013797 334 NNELYSLETSSNELRVYLKDSNS 356 (436)
Q Consensus 334 ~g~lyv~gg~~~~i~~yd~~~~~ 356 (436)
+|.+++.++..+.|.+||+.+.+
T Consensus 178 dG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 178 KGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCCEEEEEecCCEEEEEECCCCc
Confidence 67888777767889999998753
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=25.49 E-value=4.5e+02 Score=22.87 Aligned_cols=64 Identities=17% Similarity=0.097 Sum_probs=35.0
Q ss_pred CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCC
Q 013797 231 GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYA 306 (436)
Q Consensus 231 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~ 306 (436)
+.++.++-|.. ...+..||.+.. .+..++........-.=+|++.+++|... ....+..||..+
T Consensus 71 g~~favi~g~~------~~~v~lyd~~~~---~i~~~~~~~~n~i~wsP~G~~l~~~g~~n---~~G~l~~wd~~~ 134 (194)
T PF08662_consen 71 GNEFAVIYGSM------PAKVTLYDVKGK---KIFSFGTQPRNTISWSPDGRFLVLAGFGN---LNGDLEFWDVRK 134 (194)
T ss_pred CCEEEEEEccC------CcccEEEcCccc---EeEeecCCCceEEEECCCCCEEEEEEccC---CCcEEEEEECCC
Confidence 45666665532 225888999632 22222221111111123788888888653 235688999873
No 224
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=25.04 E-value=5.7e+02 Score=24.13 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=64.9
Q ss_pred EEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcc-eeEEEECCEEEEEeccCCCCCcCCEEEEEEC
Q 013797 226 ASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKL-CSGCYMDNKFYVIGGRNEKDKPLTCGEAYDE 304 (436)
Q Consensus 226 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~ 304 (436)
+...-+.+.+++|+.. .+..=|-.-++|.+.-. +..|+. ++..+.+.+=+++| ....++.=+-
T Consensus 49 a~~~~g~~gwlVg~rg--------tiletdd~g~tw~qal~-~~gr~~f~sv~f~~~egw~vG-------e~sqll~T~D 112 (339)
T COG4447 49 AFTESGSHGWLVGGRG--------TILETDDGGITWAQALD-FLGRHAFHSVSFLGMEGWIVG-------EPSQLLHTTD 112 (339)
T ss_pred eEeecCcceEEEcCcc--------eEEEecCCcccchhhhc-hhhhhheeeeeeecccccccC-------CcceEEEecC
Confidence 4444577889998754 24444556778987643 333554 44444555455555 2334555555
Q ss_pred CCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-EEEEEecCCCeEEEEECCCCcEEEcc
Q 013797 305 YAGTWYHIPDILKDFPAETGKSPPLIAVVNN-ELYSLETSSNELRVYLKDSNSWKNLG 361 (436)
Q Consensus 305 ~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g-~lyv~gg~~~~i~~yd~~~~~W~~v~ 361 (436)
.-.+|.+++---. .+-....+..++. +-|++|. .+.|+.-+-..+.|+.+-
T Consensus 113 gGqsWARi~~~e~-----~eg~~~sI~f~d~q~g~m~gd-~Gail~T~DgGk~Wk~l~ 164 (339)
T COG4447 113 GGQSWARIPLSEK-----LEGFPDSITFLDDQRGEMLGD-QGAILKTTDGGKNWKALV 164 (339)
T ss_pred CCcchhhchhhcC-----CCCCcceeEEecchhhhhhcc-cceEEEecCCcccHhHhc
Confidence 5678998873211 1112234555555 4466654 456666666677899874
No 225
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=24.32 E-value=4.2e+02 Score=26.21 Aligned_cols=191 Identities=10% Similarity=-0.028 Sum_probs=78.9
Q ss_pred hhcCccCCeEEEeccCCCeEEEEecCCCCeEeCCCCCCCCCccCCCeeeEEeCCEEEEEce---e---------------
Q 013797 135 REIGFREPSVFMLASGDSSWWAFDRHFQTRRKLPELPSDPCFKLGDKESLCAGTHLIVSGN---E--------------- 196 (436)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~~~~~dp~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~iyv~GG---~--------------- 196 (436)
..++.....++.+.. ...+...|..+.+=..+-..|....... ..++..++..++.-- .
T Consensus 86 ~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~~vy~~p~~~~g~g--t~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 86 GFLSPDDRALYYVKN-GRSLRRVDLDTLEERVVYEVPDDWKGYG--TWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp -EE-TTSSEEEEEET-TTEEEEEETTT--EEEEEE--TTEEEEE--EEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred eEEecCCCeEEEEEC-CCeEEEEECCcCcEEEEEECCccccccc--ceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 334444444444433 4577888888877655555554432110 001122232222100 0
Q ss_pred --cCCCeEEEEECCCCCEEeCCCCCCCCcccEEEE-eCCEEEEE---cCcCCCCCCccceEEEEeCCCCCeEeCC-CCcc
Q 013797 197 --IEGGVIWRYELETNNWFKGPSMRRPRCLFASAT-CGTFAFVA---GGHGMDGSGVLNSAERYNPETKSWDSLP-GMRQ 269 (436)
Q Consensus 197 --~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~---GG~~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~ 269 (436)
.....++.-|..|++.+.+-.-. ...+|.... .+..+.++ |..+. .-..||..|......+.+. .++.
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGpw~~----Vd~RiW~i~~dg~~~~~v~~~~~~ 237 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGPWDL----VDQRIWTINTDGSNVKKVHRRMEG 237 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-TTT----SS-SEEEEETTS---EESS---TT
T ss_pred hhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCCcce----eceEEEEEEcCCCcceeeecCCCC
Confidence 01146778888888776653211 111222222 23333333 22221 2236899998766655553 3332
Q ss_pred CCcceeEEEECCEEEEE-eccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC
Q 013797 270 RRKLCSGCYMDNKFYVI-GGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNNELYSLETS 343 (436)
Q Consensus 270 ~r~~~~~~~~~g~iyv~-gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~ 343 (436)
...+|---..+|..+.+ +...+ + ....+..||+.+..=+.+..+| .+.|-....+|+|++-.|.
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~-~-~~~~i~~~d~~t~~~~~~~~~p--------~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPG-G-QDFWIAGYDPDTGERRRLMEMP--------WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETT-T---EEEEEE-TTT--EEEEEEE---------SEEEEEE-TTSSEEEEEE-
T ss_pred cccccccccCCCCEEEEEeecCC-C-CceEEEeeCCCCCCceEEEeCC--------ceeeeEEcCCCCEEEecCC
Confidence 22233333445553333 33222 1 3446788999988544454443 2445666778888888664
No 226
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=24.11 E-value=6.1e+02 Score=23.86 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=36.0
Q ss_pred eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCc
Q 013797 230 CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT 308 (436)
Q Consensus 230 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~ 308 (436)
-+|.+...||.++ .+...|+...+- +-.+...-.-++.++.-++..+..+. -..|-++|+++..
T Consensus 202 pDGslcasGgkdg-------~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at------~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 202 PDGSLCASGGKDG-------EAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAAT------ATSIKIWDLESKA 265 (315)
T ss_pred CCCCEEecCCCCc-------eEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeecc------CCceEEEeccchh
Confidence 4899999998765 355667665542 21222222233455556666555542 2346777776664
No 227
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=24.07 E-value=6.3e+02 Score=24.01 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=51.8
Q ss_pred CCEEEEEcCcCCCCCCccceEE-EEeCCCCCeEeCCCCccCCcceeEEEE-------CCEEEEEeccCCCCCcCCEEEEE
Q 013797 231 GTFAFVAGGHGMDGSGVLNSAE-RYNPETKSWDSLPGMRQRRKLCSGCYM-------DNKFYVIGGRNEKDKPLTCGEAY 302 (436)
Q Consensus 231 ~~~iyv~GG~~~~~~~~~~~~~-~yd~~t~~W~~~~~~p~~r~~~~~~~~-------~g~iyv~gG~~~~~~~~~~v~~y 302 (436)
+|..++.||++.. --+| +|+-..|.|..- +|.++++ +..|+..| .-..+..|
T Consensus 58 ~gs~~aSgG~Dr~-----I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~g-------tDk~v~~w 117 (338)
T KOG0265|consen 58 DGSCFASGGSDRA-----IVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCG-------TDKTVRGW 117 (338)
T ss_pred CCCeEeecCCcce-----EEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEec-------CCceEEEE
Confidence 5667777887632 1133 355667777643 4444443 23455544 34578999
Q ss_pred ECCCCcEEEcCCCCCCCCCCCCCCCCEE--EEECCEEEEEecCCCeEEEEECCCCc
Q 013797 303 DEYAGTWYHIPDILKDFPAETGKSPPLI--AVVNNELYSLETSSNELRVYLKDSNS 356 (436)
Q Consensus 303 D~~~~~W~~v~~~~~~~~~~~~r~~~~~--~~~~g~lyv~gg~~~~i~~yd~~~~~ 356 (436)
|.++++=..--..- .+..-.+ .-.+-.|.+-|.-.+++..||..++.
T Consensus 118 D~~tG~~~rk~k~h-------~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 118 DAETGKRIRKHKGH-------TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred ecccceeeehhccc-------cceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 99988643211110 0000000 11123455555556789999988643
No 228
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=23.96 E-value=5.7e+02 Score=23.50 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=57.3
Q ss_pred EEEEeCCCCCeEeCCCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEEC----CCCcEEEcCCCCCCCCCCCCCC
Q 013797 251 AERYNPETKSWDSLPGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDE----YAGTWYHIPDILKDFPAETGKS 326 (436)
Q Consensus 251 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~----~~~~W~~v~~~~~~~~~~~~r~ 326 (436)
+.......+.|..=+. |. ++++|++.+.. ...+..|.. ..+.|...-.+| .+..
T Consensus 12 ~~~~~~~~GsWmrDpl-~~----------~~r~~~~~~~~-----~~~l~E~~~~~~~~~~~~~~~~~lp------~~~~ 69 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDPL-PA----------DDRIYVMNYFD-----GLMLTEYTNLEDFKRGRKAEKYRLP------YSWD 69 (249)
T ss_pred EEeeccccceeecCCC-cc----------cCceEEecccc-----CceEEEeccHHHhhccCcceEEeCC------CCcc
Confidence 4445566677864322 21 67788885433 233444443 334565555555 4556
Q ss_pred CCEEEEECCEEEEEecCCCeEEEEECCCC---cEEEccc
Q 013797 327 PPLIAVVNNELYSLETSSNELRVYLKDSN---SWKNLGL 362 (436)
Q Consensus 327 ~~~~~~~~g~lyv~gg~~~~i~~yd~~~~---~W~~v~~ 362 (436)
+.+.++.+|.+|.-......|..||.++. .|..++.
T Consensus 70 gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~ 108 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPY 108 (249)
T ss_pred ccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccc
Confidence 67789999999999877888999999884 4666543
No 229
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=23.63 E-value=1.5e+02 Score=16.81 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=15.9
Q ss_pred EECCEEEEEecCCCeEEEEECCCC
Q 013797 332 VVNNELYSLETSSNELRVYLKDSN 355 (436)
Q Consensus 332 ~~~g~lyv~gg~~~~i~~yd~~~~ 355 (436)
..+|.+|+. ...+.++++|.+++
T Consensus 4 ~~~~~v~~~-~~~g~l~a~d~~~G 26 (33)
T smart00564 4 LSDGTVYVG-STDGTLYALDAKTG 26 (33)
T ss_pred EECCEEEEE-cCCCEEEEEEcccC
Confidence 445666654 45688999998765
No 230
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=23.36 E-value=7.5e+02 Score=24.65 Aligned_cols=112 Identities=10% Similarity=0.081 Sum_probs=60.9
Q ss_pred eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeE-EEECCEEEEEeccCCCCCcCCEEEEEECCCCc
Q 013797 230 CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSG-CYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGT 308 (436)
Q Consensus 230 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~ 308 (436)
.+|.+...||.+..+ .++|..++.-...=.-. ...-+++ ..-||...+.||.+ +.+-++|+...+
T Consensus 313 ~DGSL~~tGGlD~~~-------RvWDlRtgr~im~L~gH-~k~I~~V~fsPNGy~lATgs~D------nt~kVWDLR~r~ 378 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLG-------RVWDLRTGRCIMFLAGH-IKEILSVAFSPNGYHLATGSSD------NTCKVWDLRMRS 378 (459)
T ss_pred CCCceeeccCccchh-------heeecccCcEEEEeccc-ccceeeEeECCCceEEeecCCC------CcEEEeeecccc
Confidence 378899999987543 45788887754331101 1111122 22367777777643 345666765443
Q ss_pred EEEcCCCCCCCCCCCCCCCCEEEE--ECCEEEEEecCCCeEEEEECCCCcEEEcccCC
Q 013797 309 WYHIPDILKDFPAETGKSPPLIAV--VNNELYSLETSSNELRVYLKDSNSWKNLGLVP 364 (436)
Q Consensus 309 W~~v~~~~~~~~~~~~r~~~~~~~--~~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p 364 (436)
= +..||...+.-. .+.. ..|.+++..++.+.+-+|... .|..++.|.
T Consensus 379 ~--ly~ipAH~nlVS-----~Vk~~p~~g~fL~TasyD~t~kiWs~~--~~~~~ksLa 427 (459)
T KOG0272|consen 379 E--LYTIPAHSNLVS-----QVKYSPQEGYFLVTASYDNTVKIWSTR--TWSPLKSLA 427 (459)
T ss_pred c--ceecccccchhh-----heEecccCCeEEEEcccCcceeeecCC--Ccccchhhc
Confidence 2 444542111100 1111 257777777888888888654 487776553
No 231
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=23.11 E-value=6e+02 Score=23.45 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=62.8
Q ss_pred CCEEeCCCCCC-----CCcccEEEE--eCCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeCCCCccCCcceeEEE--EC
Q 013797 210 NNWFKGPSMRR-----PRCLFASAT--CGTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSLPGMRQRRKLCSGCY--MD 280 (436)
Q Consensus 210 ~~W~~l~~~p~-----~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~ 280 (436)
..|+..+|+.. |-.+ ++-. -.+.|+.+||.. .++..|.++++-+..-. ...-+-|+.+. .+
T Consensus 99 ~lwe~~~P~~~~~~evPeIN-am~ldP~enSi~~AgGD~--------~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEIN-AMWLDPSENSILFAGGDG--------VIYQVDLEDGRIQREYR-GHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhcCccccCcccCCccc-eeEeccCCCcEEEecCCe--------EEEEEEecCCEEEEEEc-CCcceeeeeeecccC
Confidence 34888777653 2222 2222 357788888743 47888999887654311 01112333332 23
Q ss_pred CEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCC--EEEEECCEEEEEecCCCeEEEEECCCCcEE
Q 013797 281 NKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPP--LIAVVNNELYSLETSSNELRVYLKDSNSWK 358 (436)
Q Consensus 281 g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~--~~~~~~g~lyv~gg~~~~i~~yd~~~~~W~ 358 (436)
+.| +.|+.+ ..+-++|.++.+=..+-..-.....-.+..+- ++...+..-.+.|| -..+-.|++...+=+
T Consensus 169 ~qi-lsG~ED------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 169 GQI-LSGAED------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred cce-eecCCC------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCce
Confidence 333 224323 24678888888755442211111111111222 33333444344443 245566666655444
Q ss_pred Ec
Q 013797 359 NL 360 (436)
Q Consensus 359 ~v 360 (436)
.+
T Consensus 241 ~v 242 (325)
T KOG0649|consen 241 CV 242 (325)
T ss_pred EE
Confidence 43
No 232
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.58 E-value=9.4e+02 Score=25.50 Aligned_cols=134 Identities=10% Similarity=0.077 Sum_probs=67.8
Q ss_pred CeEEEEECCCCC-EEeCCCCCCCCcccEEEEe---CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEeC--------CCC
Q 013797 200 GVIWRYELETNN-WFKGPSMRRPRCLFASATC---GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDSL--------PGM 267 (436)
Q Consensus 200 ~~v~~ydp~t~~-W~~l~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~--------~~~ 267 (436)
..+-++|+...- |.. ..+.....+..+.++ ++.+++.||.+. .+.++|..+..=+.+ .++
T Consensus 95 tTVK~W~~~~~~~~c~-stir~H~DYVkcla~~ak~~~lvaSgGLD~-------~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCM-STIRTHKDYVKCLAYIAKNNELVASGGLDR-------KIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred ceEEEeecccCcchhH-hhhhcccchheeeeecccCceeEEecCCCc-------cEEEEEccCcchhhhhhccccccccC
Confidence 467778776553 321 122223333334333 677888888763 477788776532221 223
Q ss_pred c-cCCcceeEEEE--CCEEEEEeccCCCCCcCCEEEEEECCCCcE-EEcCCCCCCCCCCCCCCCCEEEEECCEEEEEecC
Q 013797 268 R-QRRKLCSGCYM--DNKFYVIGGRNEKDKPLTCGEAYDEYAGTW-YHIPDILKDFPAETGKSPPLIAVVNNELYSLETS 343 (436)
Q Consensus 268 p-~~r~~~~~~~~--~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W-~~v~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~ 343 (436)
+ .++..--+... .|.+++-|| ....+..||+.+.+= .++..... .-| .-++.-+|.-.+-+++
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGg------tek~lr~wDprt~~kimkLrGHTd-----NVr--~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGG------TEKDLRLWDPRTCKKIMKLRGHTD-----NVR--VLLVNDDGTRLLSASS 233 (735)
T ss_pred CCCCccceeeeecCCcceEEEecC------cccceEEeccccccceeeeecccc-----ceE--EEEEcCCCCeEeecCC
Confidence 3 22222112223 344777777 345678999988752 22221110 111 1112225555555666
Q ss_pred CCeEEEEECCC
Q 013797 344 SNELRVYLKDS 354 (436)
Q Consensus 344 ~~~i~~yd~~~ 354 (436)
.+.|-.||+..
T Consensus 234 DgtIrlWdLgq 244 (735)
T KOG0308|consen 234 DGTIRLWDLGQ 244 (735)
T ss_pred CceEEeeeccc
Confidence 67777777654
No 233
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=22.44 E-value=4.6e+02 Score=25.19 Aligned_cols=72 Identities=10% Similarity=-0.009 Sum_probs=44.3
Q ss_pred EEEEeCCCCCeEeC-CCCccCCcceeEEEECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCE
Q 013797 251 AERYNPETKSWDSL-PGMRQRRKLCSGCYMDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPL 329 (436)
Q Consensus 251 ~~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~ 329 (436)
-.+.|..+++=-.- -.|| |+--.++|++|+..- ....+..+|+++++.+.+...|. .+ .+
T Consensus 187 G~vidv~s~evl~~GLsmP-----hSPRWhdgrLwvlds------gtGev~~vD~~~G~~e~Va~vpG-----~~---rG 247 (335)
T TIGR03032 187 GCVIDIPSGEVVASGLSMP-----HSPRWYQGKLWLLNS------GRGELGYVDPQAGKFQPVAFLPG-----FT---RG 247 (335)
T ss_pred eEEEEeCCCCEEEcCccCC-----cCCcEeCCeEEEEEC------CCCEEEEEcCCCCcEEEEEECCC-----CC---cc
Confidence 34567777742211 1222 222357899999864 34568999999999999987773 22 23
Q ss_pred EEEECCEEEEEec
Q 013797 330 IAVVNNELYSLET 342 (436)
Q Consensus 330 ~~~~~g~lyv~gg 342 (436)
+... |.+.++|-
T Consensus 248 L~f~-G~llvVgm 259 (335)
T TIGR03032 248 LAFA-GDFAFVGL 259 (335)
T ss_pred ccee-CCEEEEEe
Confidence 4444 66666663
No 234
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.99 E-value=3.3e+02 Score=28.62 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=40.5
Q ss_pred ECCEEEEEeccCCCCCcCCEEEEEECCCCcEEEcCCCCC--CCCCC-CCCCCCEEEEE--CCEEEEEecCCCeEEEEECC
Q 013797 279 MDNKFYVIGGRNEKDKPLTCGEAYDEYAGTWYHIPDILK--DFPAE-TGKSPPLIAVV--NNELYSLETSSNELRVYLKD 353 (436)
Q Consensus 279 ~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~W~~v~~~~~--~~~~~-~~r~~~~~~~~--~g~lyv~gg~~~~i~~yd~~ 353 (436)
-+..+.+-||.+ ..|..||..++.=+.+.+... ..+.. .++........ .|.+++-||..+.+..||+.
T Consensus 128 k~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr 201 (735)
T KOG0308|consen 128 KNNELVASGGLD------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR 201 (735)
T ss_pred cCceeEEecCCC------ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc
Confidence 366778888855 357888887663222221110 00000 22222222333 34688889989999999998
Q ss_pred CC
Q 013797 354 SN 355 (436)
Q Consensus 354 ~~ 355 (436)
++
T Consensus 202 t~ 203 (735)
T KOG0308|consen 202 TC 203 (735)
T ss_pred cc
Confidence 85
No 235
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.52 E-value=6.8e+02 Score=23.06 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=23.3
Q ss_pred CCEEEEEecCCCeEEEEECCCCcEEEcccCCC
Q 013797 334 NNELYSLETSSNELRVYLKDSNSWKNLGLVPV 365 (436)
Q Consensus 334 ~g~lyv~gg~~~~i~~yd~~~~~W~~v~~~p~ 365 (436)
+|.||+.--..+.|..+|+.+++--+-=.+|.
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCC
Confidence 68999986666789999999976444334553
No 236
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=20.37 E-value=7.5e+02 Score=23.54 Aligned_cols=211 Identities=18% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCCcccEEEEeCCEEEEEcCcCCCCCCccceEEEEeCCCCCe-EeC-
Q 013797 187 GTHLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPRCLFASATCGTFAFVAGGHGMDGSGVLNSAERYNPETKSW-DSL- 264 (436)
Q Consensus 187 ~~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~- 264 (436)
.+.+|.+. ...+.+++|||.+++=+.... |.....-...--++.|.+. ...+..++++++.= +.+
T Consensus 36 ~~~L~w~D--I~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~----------~~g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 36 RGALLWVD--ILGGRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIAC----------EHGVRLLDPDTGGKITLLA 102 (307)
T ss_pred CCEEEEEe--CCCCeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEE----------ccccEEEeccCCceeEEec
Q ss_pred ---CCCccCCcceeEEEECCEEEEEecc-----CCCCCcCCEEEEEECCCCcEEEcCCCCCCCCCCCCCCCCEEEEECC-
Q 013797 265 ---PGMRQRRKLCSGCYMDNKFYVIGGR-----NEKDKPLTCGEAYDEYAGTWYHIPDILKDFPAETGKSPPLIAVVNN- 335 (436)
Q Consensus 265 ---~~~p~~r~~~~~~~~~g~iyv~gG~-----~~~~~~~~~v~~yD~~~~~W~~v~~~~~~~~~~~~r~~~~~~~~~g- 335 (436)
...+..|.+-..+.-+|.||+-.-. .........++.+|+ .+...++..-. ......-+..-++
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~------~~~~NGla~SpDg~ 175 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD------LTIPNGLAFSPDGK 175 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc------EEecCceEECCCCC
Q ss_pred EEEEEecCCCeEEEEECCC--------CcEEEcccCCCccCCCCCceEEEEEeCCEEEEEcCCCCCCCCcEEEEeecCCC
Q 013797 336 ELYSLETSSNELRVYLKDS--------NSWKNLGLVPVRADFNRGWGIAFKSLGNELLVIGASSTSSHESMAIYTCCPSS 407 (436)
Q Consensus 336 ~lyv~gg~~~~i~~yd~~~--------~~W~~v~~~p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~y~~~p~~ 407 (436)
.+|+.....+.|++|+... +.+.....-+..+.. +++ --+|.|++...... ..+.+|
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG-----~~v-DadG~lw~~a~~~g---~~v~~~------ 240 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG-----MAV-DADGNLWVAAVWGG---GRVVRF------ 240 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc-----eEE-eCCCCEEEecccCC---ceEEEE------
Q ss_pred CCCccCcEEeecCCCCCCceeeeeEEeeC
Q 013797 408 DAGELQWRLLECGKRPLSHFIHNCSVMVA 436 (436)
Q Consensus 408 d~~~~~W~~l~~~~~~~~~~~~~~~~~~~ 436 (436)
+.+ ++++....+|. ....+|+.-++
T Consensus 241 ~pd---G~l~~~i~lP~-~~~t~~~FgG~ 265 (307)
T COG3386 241 NPD---GKLLGEIKLPV-KRPTNPAFGGP 265 (307)
T ss_pred CCC---CcEEEEEECCC-CCCccceEeCC
No 237
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=20.24 E-value=7.7e+02 Score=23.60 Aligned_cols=105 Identities=10% Similarity=0.246 Sum_probs=54.1
Q ss_pred CEEEEEceecCCCeEEEEECCCCCEEeCCCCCCCC--cccEEEEe--CCEEEEEcCcCCCCCCccceEEEEeCCCCCeEe
Q 013797 188 THLIVSGNEIEGGVIWRYELETNNWFKGPSMRRPR--CLFASATC--GTFAFVAGGHGMDGSGVLNSAERYNPETKSWDS 263 (436)
Q Consensus 188 ~~iyv~GG~~~~~~v~~ydp~t~~W~~l~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~ 263 (436)
|...++| .....+..||..|-+-.--.. |... .....+-+ .+++|+.|..++ .+-++|-.+++...
T Consensus 228 Gefllvg--TdHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG-------~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 228 GEFLLVG--TDHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG-------AIKLWDGVSNRCVR 297 (430)
T ss_pred CceEEEe--cCCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCC-------cEEeeccccHHHHH
Confidence 3334444 344678889988877543332 2221 11222223 578999988765 36778877765422
Q ss_pred -CCCCccCCcceeEEE-ECCEEEEEeccCCCCCcCCEEEEEECCCCc
Q 013797 264 -LPGMRQRRKLCSGCY-MDNKFYVIGGRNEKDKPLTCGEAYDEYAGT 308 (436)
Q Consensus 264 -~~~~p~~r~~~~~~~-~~g~iyv~gG~~~~~~~~~~v~~yD~~~~~ 308 (436)
+..-...-.-+++++ -|++..+..|.+. .+..+++.+++
T Consensus 298 t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS------~vkLWEi~t~R 338 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNGKYILSSGKDS------TVKLWEISTGR 338 (430)
T ss_pred HHHhhcCCceeeeEEEccCCeEEeecCCcc------eeeeeeecCCc
Confidence 222111111223332 3677666666442 23455555554
Done!