Query 013798
Match_columns 436
No_of_seqs 256 out of 1528
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0365 Beta subunit of farnes 100.0 3E-102 6E-107 747.9 16.9 385 4-436 33-418 (423)
2 PLN02710 farnesyltranstransfer 100.0 9.1E-98 2E-102 761.4 17.4 421 1-435 1-437 (439)
3 COG5029 CAL1 Prenyltransferase 100.0 1.1E-76 2.4E-81 567.2 10.6 316 42-434 24-341 (342)
4 PLN03201 RAB geranylgeranyl tr 100.0 6.9E-76 1.5E-80 586.2 12.6 308 41-430 5-314 (316)
5 cd02893 FTase Protein farnesyl 100.0 1E-73 2.2E-78 567.0 13.9 298 46-387 1-299 (299)
6 KOG0366 Protein geranylgeranyl 100.0 1.1E-73 2.5E-78 532.7 12.5 308 41-431 15-325 (329)
7 cd02895 GGTase-I Geranylgerany 100.0 2.4E-71 5.2E-76 551.7 10.4 283 46-387 1-307 (307)
8 KOG0367 Protein geranylgeranyl 100.0 2.4E-71 5.2E-76 525.4 8.1 310 42-432 9-344 (347)
9 cd02894 GGTase-II Geranylgeran 100.0 1.3E-67 2.9E-72 521.1 9.9 283 44-387 1-287 (287)
10 cd02890 PTase Protein prenyltr 100.0 3.8E-64 8.3E-69 495.7 11.2 284 46-387 1-286 (286)
11 PLN03201 RAB geranylgeranyl tr 100.0 1.4E-48 3E-53 389.8 7.1 273 91-426 7-290 (316)
12 PLN02710 farnesyltranstransfer 100.0 1.2E-48 2.7E-53 399.9 5.5 240 91-391 43-285 (439)
13 cd02893 FTase Protein farnesyl 100.0 2.1E-48 4.7E-53 385.9 6.3 271 94-426 1-298 (299)
14 cd02894 GGTase-II Geranylgeran 100.0 2.7E-46 5.8E-51 369.3 5.0 270 93-425 2-285 (287)
15 cd02890 PTase Protein prenyltr 100.0 7.5E-44 1.6E-48 351.3 5.2 269 94-425 1-284 (286)
16 cd02895 GGTase-I Geranylgerany 100.0 7.2E-43 1.6E-47 347.5 11.3 238 43-281 48-307 (307)
17 KOG0366 Protein geranylgeranyl 100.0 2.2E-44 4.8E-49 336.4 0.1 268 142-426 17-300 (329)
18 COG5029 CAL1 Prenyltransferase 100.0 7.1E-36 1.5E-40 286.6 2.4 291 42-427 9-314 (342)
19 KOG0365 Beta subunit of farnes 100.0 5.7E-35 1.2E-39 282.4 6.6 277 91-429 71-371 (423)
20 cd00688 ISOPREN_C2_like This g 100.0 6.8E-31 1.5E-35 254.3 10.9 281 47-386 2-299 (300)
21 KOG0367 Protein geranylgeranyl 99.9 1.3E-27 2.8E-32 227.7 8.8 194 42-237 123-323 (347)
22 cd00688 ISOPREN_C2_like This g 99.9 1.4E-22 2.9E-27 196.2 10.4 232 43-279 51-298 (300)
23 PF13249 Prenyltrans_2: Prenyl 99.7 7.7E-19 1.7E-23 148.7 4.7 109 98-212 1-113 (113)
24 cd02889 SQCY Squalene cyclase 99.7 5E-18 1.1E-22 171.4 9.6 211 48-261 3-261 (348)
25 TIGR03463 osq_cycl 2,3-oxidosq 99.7 2.3E-18 4.9E-23 186.7 6.3 172 90-262 398-606 (634)
26 cd02889 SQCY Squalene cyclase 99.7 7.8E-18 1.7E-22 170.0 8.4 232 95-389 2-293 (348)
27 cd02892 SQCY_1 Squalene cyclas 99.7 2.5E-17 5.5E-22 179.3 8.3 184 74-261 376-605 (634)
28 PLN03012 Camelliol C synthase 99.7 1.5E-17 3.2E-22 180.7 4.8 169 88-260 509-722 (759)
29 TIGR01507 hopene_cyclase squal 99.7 5.9E-17 1.3E-21 175.6 7.4 185 71-261 379-599 (635)
30 PLN02993 lupeol synthase 99.7 5.2E-17 1.1E-21 176.8 6.5 178 89-270 510-734 (763)
31 TIGR03463 osq_cycl 2,3-oxidosq 99.6 4E-16 8.6E-21 169.3 9.1 253 75-389 259-579 (634)
32 cd02892 SQCY_1 Squalene cyclas 99.6 5.1E-16 1.1E-20 169.1 8.9 213 47-260 281-546 (634)
33 PF13249 Prenyltrans_2: Prenyl 99.6 7.7E-17 1.7E-21 136.4 1.8 108 149-259 1-112 (113)
34 TIGR01507 hopene_cyclase squal 99.6 2.4E-15 5.2E-20 163.1 12.8 214 46-260 289-540 (635)
35 TIGR01787 squalene_cyclas squa 99.6 1.2E-15 2.6E-20 165.3 7.6 168 89-261 385-589 (621)
36 TIGR01787 squalene_cyclas squa 99.6 4.9E-15 1.1E-19 160.6 10.7 232 47-279 270-559 (621)
37 COG1689 Uncharacterized protei 99.5 4.1E-15 9E-20 136.8 0.7 221 91-387 5-271 (274)
38 PLN02993 lupeol synthase 99.4 3.4E-12 7.4E-17 139.4 11.9 192 69-261 415-661 (763)
39 PLN03012 Camelliol C synthase 99.3 8.8E-12 1.9E-16 136.0 10.4 254 75-390 372-696 (759)
40 COG1689 Uncharacterized protei 99.2 1.9E-11 4.1E-16 112.9 7.4 151 69-234 120-272 (274)
41 PF00432 Prenyltrans: Prenyltr 99.2 2.5E-12 5.5E-17 91.2 -0.5 44 191-234 1-44 (44)
42 cd02896 complement_C3_C4_C5 Pr 99.1 7E-11 1.5E-15 117.5 7.7 154 94-262 54-228 (297)
43 cd02896 complement_C3_C4_C5 Pr 99.1 9.5E-11 2.1E-15 116.6 7.1 188 59-261 66-284 (297)
44 cd02897 A2M_2 Proteins similar 99.1 1.7E-10 3.6E-15 114.4 8.6 152 89-253 39-209 (292)
45 PF00432 Prenyltrans: Prenyltr 99.1 1E-11 2.2E-16 88.1 -0.1 44 344-388 1-44 (44)
46 KOG0497 Oxidosqualene-lanoster 99.1 6.4E-11 1.4E-15 125.1 4.1 170 86-259 506-720 (760)
47 cd02897 A2M_2 Proteins similar 99.0 1E-09 2.2E-14 108.7 8.9 199 46-262 44-280 (292)
48 PF13243 Prenyltrans_1: Prenyl 98.8 1.2E-10 2.6E-15 98.0 -5.4 104 146-253 2-107 (109)
49 PF13243 Prenyltrans_1: Prenyl 98.7 3.9E-09 8.4E-14 88.8 1.8 105 95-205 2-107 (109)
50 cd02891 A2M_like Proteins simi 98.4 7.5E-07 1.6E-11 87.2 7.8 114 92-205 49-172 (282)
51 PF07678 A2M_comp: A-macroglob 98.3 1.4E-06 3.1E-11 84.4 7.8 147 99-260 4-170 (246)
52 COG1657 SqhC Squalene cyclase 98.1 3.7E-06 8.1E-11 88.3 6.2 166 93-262 282-482 (517)
53 cd02891 A2M_like Proteins simi 97.9 9.2E-06 2E-10 79.5 3.2 107 146-252 52-171 (282)
54 PF07678 A2M_comp: A-macroglob 97.8 6.8E-06 1.5E-10 79.7 1.9 188 59-261 11-231 (246)
55 KOG0497 Oxidosqualene-lanoster 97.8 3.2E-05 6.9E-10 82.8 5.7 207 51-261 388-660 (760)
56 COG1657 SqhC Squalene cyclase 97.1 0.00044 9.5E-09 73.0 4.6 225 95-384 189-439 (517)
57 KOG1366 Alpha-macroglobulin [P 92.9 0.34 7.4E-06 57.7 8.7 87 77-164 950-1045(1436)
58 TIGR02474 pec_lyase pectate ly 92.3 0.32 6.9E-06 48.2 6.4 76 91-167 66-161 (290)
59 TIGR02474 pec_lyase pectate ly 91.6 0.074 1.6E-06 52.7 1.0 94 168-261 39-159 (290)
60 PF01122 Cobalamin_bind: Eukar 74.8 0.85 1.8E-05 46.0 -0.4 114 127-260 151-279 (326)
61 PF01122 Cobalamin_bind: Eukar 66.3 3.3 7.2E-05 41.8 1.7 63 94-164 217-279 (326)
62 PLN02279 ent-kaur-16-ene synth 62.8 11 0.00023 42.8 5.0 41 95-135 76-120 (784)
63 PLN02592 ent-copalyl diphospha 61.5 8.2 0.00018 43.7 3.8 56 95-154 118-175 (800)
64 KOG1366 Alpha-macroglobulin [P 54.6 53 0.0011 39.9 9.0 66 48-113 968-1045(1436)
65 PF07944 DUF1680: Putative gly 53.3 20 0.00043 38.7 5.0 22 93-114 84-105 (520)
66 PF10022 DUF2264: Uncharacteri 49.3 1.3E+02 0.0027 31.1 9.8 210 14-236 104-347 (361)
67 PF09492 Pec_lyase: Pectic aci 43.2 12 0.00026 37.3 1.2 64 170-233 36-109 (289)
68 PLN02592 ent-copalyl diphospha 36.5 1.9E+02 0.004 33.2 9.4 120 45-175 283-405 (800)
69 PLN02279 ent-kaur-16-ene synth 33.5 11 0.00024 42.8 -0.9 58 191-249 73-134 (784)
70 PF05817 Ribophorin_II: Oligos 24.0 1.5E+02 0.0033 32.9 6.0 125 70-205 122-250 (636)
No 1
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-102 Score=747.90 Aligned_cols=385 Identities=54% Similarity=0.931 Sum_probs=360.5
Q ss_pred CCCCCccccccchhhhHHHHHHHHHHHhcCCCchhhHHHHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHH
Q 013798 4 DTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMA 83 (436)
Q Consensus 4 ~~~~~~t~ts~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~ 83 (436)
|+..+.|.||++|.+||..+.++|+.+.+.....+..+++| |+||..||.+.|+++|+.|+.+|++|+|++||++++|+
T Consensus 33 Dd~~v~t~ts~eQ~~~Et~v~~vl~~f~~~~~~~~~~~~~~-r~kH~~YL~~~Lr~Lp~~~~~LDASR~Wm~YWil~sl~ 111 (423)
T KOG0365|consen 33 DDLHVDTVTSIEQKETETDVFEVLQSFEEISDDDPRLEPIF-RQKHLMYLDKMLRQLPSQYTCLDASRPWMCYWILNSLA 111 (423)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHH-HHHHHHHHHHHHHhCCCcccccccCcchhHHHHHHHHH
Confidence 45568999999999999999999998876544444455677 99999999999999999999999999999999999999
Q ss_pred hhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccc
Q 013798 84 LLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR 163 (436)
Q Consensus 84 lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~ 163 (436)
||+..++++..+++|+||..||.|.|||||+||+.+|++.||+||++|.++|.+++++.|||++++.||.++++|||||+
T Consensus 112 lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFr 191 (423)
T KOG0365|consen 112 LLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFR 191 (423)
T ss_pred HhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeE
Confidence 99988999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCccc
Q 013798 164 MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDA 243 (436)
Q Consensus 164 ~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~ 243 (436)
.+.+||+|+|.+|||+++++|+|++.++..+.+.+||.+||+++||||+.|+.|+|++|||||+|+|++|++.+.+|.++
T Consensus 192 mh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~ 271 (423)
T KOG0365|consen 192 MHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEK 271 (423)
T ss_pred eecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecc-cccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCC
Q 013798 244 LIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSS 322 (436)
Q Consensus 244 l~~wL~~rQ~-~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 322 (436)
+++|..+||+ .+|||+||+||+||+|||||++|++.||.+........
T Consensus 272 Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s------------------------------- 320 (423)
T KOG0365|consen 272 LLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHS------------------------------- 320 (423)
T ss_pred HHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHHHhcccccc-------------------------------
Confidence 9999999999 89999999999999999999999999999976421111
Q ss_pred CCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCcc
Q 013798 323 DEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPR 402 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~ 402 (436)
-...+||.++|++|||.|||.+.|||+|||+|++|.|||||+|+|||++||......+++++++
T Consensus 321 ----------------~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y~~~~~d~~~~~~ 384 (423)
T KOG0365|consen 321 ----------------LEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQHYSCAPSDSPHNPD 384 (423)
T ss_pred ----------------hhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcchhHHhhhccCCCCCCCCCc
Confidence 1125789999999999999999999999999999999999999999999998777777788888
Q ss_pred ccccCCcccccccchhHHHhhhhhhhhhhhhccC
Q 013798 403 AVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS 436 (436)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~ 436 (436)
.|+|.+.|.|.|+||+||||.+.+.++++||.++
T Consensus 385 ~ilg~~~n~L~p~~pvyni~~~~~~~a~~yF~s~ 418 (423)
T KOG0365|consen 385 RILGSSKNSLLPVHPVYNIPIDSVRKAIEYFLSN 418 (423)
T ss_pred ccccCchhhcCccCccccCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999864
No 2
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=9.1e-98 Score=761.39 Aligned_cols=421 Identities=69% Similarity=1.163 Sum_probs=366.6
Q ss_pred CCCCCCCCccccccchhhhHHHHHHHHHHHhcCCCchhhHHHHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHH
Q 013798 1 MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILH 80 (436)
Q Consensus 1 ~~~~~~~~~t~ts~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~ 80 (436)
++-+|++++|+||++|.+||+.|.++|+.+...++..+..++.|.|++|++||+++|+.+|..|+++|++|+|++||+|+
T Consensus 1 ~~~~~~~~~t~t~~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~H~~yl~~~l~~lp~~~~~lDa~r~~~~Yw~L~ 80 (439)
T PLN02710 1 RVSSELPRLTVTQREQWKVEAKVFDIYRSFASAPPNAQSVMLELWREKHLEYLTRGLRQLGPSFSVLDANRPWLCYWILH 80 (439)
T ss_pred CCcccCCCCCcCHHHHHHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHH
Confidence 45678899999999999999999999999865544444456789999999999999999999999999999999999999
Q ss_pred HHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCC
Q 013798 81 SMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSG 160 (436)
Q Consensus 81 ~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dG 160 (436)
+|.|||.++++++++++++||.+||+++|||+++|++++|+++||+||++|.+||+++.++.+||+++++||+++|++||
T Consensus 81 sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dG 160 (439)
T PLN02710 81 SIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSG 160 (439)
T ss_pred HHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCC
Confidence 99999987888889999999999999999999999999999999999999999998767889999999999999999999
Q ss_pred ccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCC
Q 013798 161 AFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD 240 (436)
Q Consensus 161 gF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~ 240 (436)
||.+++++|.|+|+||||+++++|||.++.++++++++||++||++||||++.|+.|+|+++||||||+|++||+.+.+|
T Consensus 161 gF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id 240 (439)
T PLN02710 161 GFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLD 240 (439)
T ss_pred CcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccC
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeecccccccccccccccccchhccchhHHHHHHHHHhhhcCCC-------Cc---cccCcccccC-C--CC
Q 013798 241 LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESP-------TP---VDQRGAECSI-D--NT 307 (436)
Q Consensus 241 ~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~-------~~---~~~~~~~~~~-~--~~ 307 (436)
.+++++||++||..+|||+|||||++|+|||||++|+|+||+.++.+..++. .+ -...|.+-+. + ..
T Consensus 241 ~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (439)
T PLN02710 241 LPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAG 320 (439)
T ss_pred HHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999875532211 00 0000111000 0 00
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcccccc---ccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCC
Q 013798 308 QTTTASDVSEGDGSSDEISSQGDEHCHFQH---REREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGL 384 (436)
Q Consensus 308 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~L 384 (436)
.++. .++...|..+.. ....++||.++|++|||.|||.+.|||+|||+|.||+|||||+|+||
T Consensus 321 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGL 386 (439)
T PLN02710 321 DTDS--------------ADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGL 386 (439)
T ss_pred cccc--------------ccccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHH
Confidence 0000 011111111110 13346899999999999999999999999999999999999999999
Q ss_pred chhhccccCCCCCCCCccccccCCcccccccchhHHHhhhhhhhhhhhhcc
Q 013798 385 SICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 435 (436)
Q Consensus 385 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~~ 435 (436)
|++||....+.+++++.+.++|.+.|.|.|+||+|||+.+++.++++||++
T Consensus 387 Sl~q~~~~~~~~~~~~~~~~~g~~~n~l~~~~p~~ni~~~~~~~~~~~f~~ 437 (439)
T PLN02710 387 SVAQYSASKDEDSPPLPRHVLGPYSNLLEPIHPLYNVVLDKYHEAIEFFSS 437 (439)
T ss_pred HHHhhcccccCCCCCccccccCCCccccCCCCCccCCCHHHHHHHHHHHhh
Confidence 999998776677778888899999999999999999999999999999986
No 3
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-76 Score=567.23 Aligned_cols=316 Identities=38% Similarity=0.725 Sum_probs=298.4
Q ss_pred HHHhhhhhHHHHHHhh-hhcCCccceecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCch
Q 013798 42 MELQRKNHVEYLLRGL-QQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120 (436)
Q Consensus 42 ~~l~r~~h~~yl~~~l-~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh 120 (436)
+.|.+++|++|+...+ ..+|.-|.-.+.+|+|.+||..+++.+|+......++++.+.++++|+.+.|||++.|++.+|
T Consensus 24 l~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~h 103 (342)
T COG5029 24 LQLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSH 103 (342)
T ss_pred cccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchh
Confidence 5799999999999974 468888899999999999999999999998655678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCee
Q 013798 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI 200 (436)
Q Consensus 121 ~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yI 200 (436)
+++|++||++|.+++....++.++|+.+++||..+|+|||+|.+.-.||+|+|++|+|+++++|+|..+.++.+.+++||
T Consensus 104 L~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl 183 (342)
T COG5029 104 LASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYL 183 (342)
T ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 99999999999999865568889999999999999999999999888999999999999999999999999999999999
Q ss_pred eeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCC-cccccceeeeecccccccccccccccccchhccchhHHH
Q 013798 201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD-LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA 279 (436)
Q Consensus 201 lscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~-~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~ 279 (436)
++|||+|||||..|+.|||+++||||+|+|+++++++.++ ++++++||.+||.++||||||+||.+|+|||||++++++
T Consensus 184 ~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~ 263 (342)
T COG5029 184 KKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLA 263 (342)
T ss_pred HHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHH
Confidence 9999999999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccC
Q 013798 280 LLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD 359 (436)
Q Consensus 280 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~ 359 (436)
||+.. .++|.+.|.+|||.|||.
T Consensus 264 il~~~---------------------------------------------------------~~in~e~L~~yiL~c~q~ 286 (342)
T COG5029 264 ILGKL---------------------------------------------------------DFINTEELTDYILDCQQE 286 (342)
T ss_pred hcchh---------------------------------------------------------hhcCHHHHHHHHHhhccc
Confidence 99854 358999999999999888
Q ss_pred CCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccccccCCcccccccchhHHHhhhhhhhhhhhhc
Q 013798 360 PRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFS 434 (436)
Q Consensus 360 ~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~ 434 (436)
..|||+|||++.+|+|||||+|+|||+++... ++|+||.|++|.+.+++++.||.
T Consensus 287 ~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~--------------------l~~v~p~~clP~e~~~k~k~y~~ 341 (342)
T COG5029 287 TSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKY--------------------LNPVDPIYCLPQEVTNKFKKYFC 341 (342)
T ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHhccCC--------------------CCCCCCcccCCHHHHHHHHHhhc
Confidence 89999999999999999999999999997653 67999999999999999999985
No 4
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=6.9e-76 Score=586.21 Aligned_cols=308 Identities=31% Similarity=0.590 Sum_probs=286.1
Q ss_pred HHHHhhhhhHHHHHHhhhhcCCcccee--cCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCC
Q 013798 41 MMELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQM 118 (436)
Q Consensus 41 ~~~l~r~~h~~yl~~~l~~lp~~~~~~--d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~ 118 (436)
++++.+++|++||.++++ +|++|.+. |++|++.+||++++|++|+. ++..+++++++||++||+++|||++.++++
T Consensus 5 ~~~l~~~kh~~yl~~~~~-~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~-~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~ 82 (316)
T PLN03201 5 MGELVVDKHVRYIKSLEK-KKDSFESVVMEHLRMNGAYWGLTALDLLGK-LDDVDRDEVVSWVMRCQHESGGFGGNTGHD 82 (316)
T ss_pred hhhccHHHHHHHHHHhCC-CCCCccccccccchHHHHHHHHHHHHHhCC-CccccHHHHHHHHHHhcCCCCCcCCCCCCc
Confidence 357999999999999665 89999776 78899999999999999997 566778999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccC
Q 013798 119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 198 (436)
Q Consensus 119 sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~ 198 (436)
+|+.+||+|+++|.++++ ++.+|++++++||.++|++||||.++++++.|+|++||++++++|++..+.++++++++
T Consensus 83 ~h~~~Ty~al~~L~ll~~---~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~ 159 (316)
T PLN03201 83 PHILYTLSAVQILALFDR---LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVD 159 (316)
T ss_pred ccHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 999999999999999964 67899999999999999999999999999999999999999999999887788999999
Q ss_pred eeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccccccccccchhccchhHH
Q 013798 199 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 278 (436)
Q Consensus 199 yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l 278 (436)
||++||++||||+..|+.|||+++||||||+|+++|..+.+|.+++++||.+||+.+|||+|||||++|+|||||++++|
T Consensus 160 ~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L 239 (316)
T PLN03201 160 YIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSL 239 (316)
T ss_pred HHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhcc
Q 013798 279 ALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 358 (436)
Q Consensus 279 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q 358 (436)
+||+.. .++|.++|++||+.|+|
T Consensus 240 ~ll~~~---------------------------------------------------------~~~d~~~l~~~i~~~q~ 262 (316)
T PLN03201 240 IIIDRV---------------------------------------------------------HWIDKDKLAKFILDCQD 262 (316)
T ss_pred HHhccc---------------------------------------------------------cccCHHHHHHHHHHHcC
Confidence 999764 24789999999999854
Q ss_pred CCCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccccccCCcccccccchhHHHhhhhhhhhh
Q 013798 359 DPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAH 430 (436)
Q Consensus 359 ~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~ 430 (436)
...|||+|+|++.||+|||||+|+||||+++.. ++++||.||||.+.++++.
T Consensus 263 ~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~~--------------------l~~~~p~~~~~~~~~~~~~ 314 (316)
T PLN03201 263 DENGGISDRPDDAVDVFHTFFGVAGLSLLGYPG--------------------LKPIDPAYALPVDVVNRIG 314 (316)
T ss_pred CCCCCcCCCcCCCCChhHHHHHHHHHHhcCCCC--------------------CCCCCCcccCCHHHHHHhc
Confidence 558999999999999999999999999997642 7799999999999998764
No 5
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=1e-73 Score=566.99 Aligned_cols=298 Identities=60% Similarity=1.083 Sum_probs=276.7
Q ss_pred hhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHH
Q 013798 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTY 125 (436)
Q Consensus 46 r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty 125 (436)
|++|++|+++++..+|.+|+++|++|+|++||++++|.+|+..++...++++++||.+||+++|||++.+++++|+.+||
T Consensus 1 ~~~h~~~~~~~l~~~p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty 80 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSFTSLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTY 80 (299)
T ss_pred ChHHHHHHHHHhhcCCccccccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHH
Confidence 57999999999999999999999999999999999999999867777899999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeece
Q 013798 126 AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQT 205 (436)
Q Consensus 126 ~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~ 205 (436)
+|+++|.++++++.++.+|++++++||+++|++||||...+++|+|+|++||+++++.||+..++++++++++||++||+
T Consensus 81 ~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~ 160 (299)
T cd02893 81 AAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQT 160 (299)
T ss_pred HHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC
Confidence 99999999997655778999999999999999999999999999999999999999999999888899999999999999
Q ss_pred eccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeeccc-ccccccccccccccchhccchhHHHHHHHH
Q 013798 206 YEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRRF 284 (436)
Q Consensus 206 ~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~-~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~ 284 (436)
+||||+..|+.|+|+++|||||++|++++..+.+|++++++||.+||.. +|||+|||||++|+|||||++++++||+.+
T Consensus 161 ~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~ 240 (299)
T cd02893 161 YEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAI 240 (299)
T ss_pred CCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999889999999999999997 999999999999999999999999999998
Q ss_pred HhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCcc
Q 013798 285 HSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGL 364 (436)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf 364 (436)
+....+.- .....+++|.++|++||+.|+|..+|||
T Consensus 241 ~~~~~~~~--------------------------------------------~~~~~~~~~~~~l~~~il~~~q~~~GGf 276 (299)
T cd02893 241 LNAEKKFD--------------------------------------------DSAEGTLFDQEALQEYILLCCQSEEGGL 276 (299)
T ss_pred hccccccc--------------------------------------------ccccccccCHHHHHHHHHHhcCCCCCCc
Confidence 64322110 0011257899999999999878889999
Q ss_pred CCCCCCCCCcceeeeeccCCchh
Q 013798 365 RDKLRKPRDYYHTCYCLSGLSIC 387 (436)
Q Consensus 365 ~~~P~k~~D~~hT~~~la~Lsl~ 387 (436)
+|+|+++||+|||||+|++|||+
T Consensus 277 ~~~p~~~~D~yHT~~~l~~Lsl~ 299 (299)
T cd02893 277 RDKPGKPRDFYHTCYALSGLSIA 299 (299)
T ss_pred CCCCCCCCCchhHHHHHHHHhcC
Confidence 99999999999999999999974
No 6
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-73 Score=532.67 Aligned_cols=308 Identities=31% Similarity=0.577 Sum_probs=286.4
Q ss_pred HHHHhhhhhHHHHHHhhhhcCCccc--eecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCC
Q 013798 41 MMELQRKNHVEYLLRGLQQLGPSFC--SLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQM 118 (436)
Q Consensus 41 ~~~l~r~~h~~yl~~~l~~lp~~~~--~~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~ 118 (436)
+.+|.++||++|+...- +...+|+ ..+.-|+..+||.+.+|++|+. +....++++|.|+++||+.+|||++.||+.
T Consensus 15 ~~~Ll~dkH~~yI~~~~-~kk~~fey~l~EhlRmsgiYWg~tal~ll~~-le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd 92 (329)
T KOG0366|consen 15 PDELLKDKHARYIESYG-KKKDSFEYCLTEHLRMSGIYWGLTALDLLGQ-LERMSREEIVSFVLSCQHEDGGFAGCPGHD 92 (329)
T ss_pred HHHHHHHHHHHHHHHhc-cccchHHHHHHhHhhhcchhhhhhHHHHhcc-cchhhHHHHHHHHHheecCCCCcCCCCCCC
Confidence 36899999999999833 3344554 4577799999999999999997 555568999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccC
Q 013798 119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 198 (436)
Q Consensus 119 sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~ 198 (436)
||+.+|++||++|++... +..+|++++.+|+..+|++||+|.+..+||+|+|++|||+++++||+.++..+++++++
T Consensus 93 ~hll~TlsAvQiL~~yds---i~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd 169 (329)
T KOG0366|consen 93 PHLLYTLSAVQILALYDS---INVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVD 169 (329)
T ss_pred hHHHHHHHHHHHHHHHcc---cccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHH
Confidence 999999999999999974 78899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccccccccccchhccchhHH
Q 013798 199 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 278 (436)
Q Consensus 199 yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l 278 (436)
|+++|.|.|||||..||.|||++..||+|++|+++|+++.+|.+.+..||..||.++||.||||.|++|+|||||++++|
T Consensus 170 ~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL 249 (329)
T KOG0366|consen 170 FVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSL 249 (329)
T ss_pred HHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhcc
Q 013798 279 ALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 358 (436)
Q Consensus 279 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q 358 (436)
+|+++++ ++|+++|++|||.| |
T Consensus 250 ~iigrl~---------------------------------------------------------wId~ekL~~FIl~c-Q 271 (329)
T KOG0366|consen 250 AIIGRLH---------------------------------------------------------WIDREKLTKFILAC-Q 271 (329)
T ss_pred HHhhhhh---------------------------------------------------------hccHHHHHHHHHhc-C
Confidence 9999975 37889999999998 6
Q ss_pred C-CCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccccccCCcccccccchhHHHhhhhhhhhhh
Q 013798 359 D-PRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHE 431 (436)
Q Consensus 359 ~-~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~ 431 (436)
. +.|||+|||+..+|+|||+|++|||||+++.. +.+++|.|++|++.+.++.-
T Consensus 272 d~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~--------------------l~~idP~fcmp~~v~~r~~~ 325 (329)
T KOG0366|consen 272 DEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPG--------------------LKPIDPIFCMPKEVLQRIKV 325 (329)
T ss_pred CCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCC--------------------ceecCCcccCcHHHHhhhcc
Confidence 6 68999999999999999999999999998875 67999999999999988753
No 7
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=2.4e-71 Score=551.73 Aligned_cols=283 Identities=36% Similarity=0.614 Sum_probs=264.4
Q ss_pred hhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccc--hhhhhcchhHhhhccC----CCCCCCCCCCC---
Q 013798 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFV--DADLEDRTIEFLSRCQ----DPNGGYGGGPG--- 116 (436)
Q Consensus 46 r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~--~~~~~~~~i~~l~~~q----~~dGGF~~~~~--- 116 (436)
++||++|++++|+.+|.+|++.|++|+|++||+|++|.+|+... +.++++++++||.+|| +++|||++.++
T Consensus 1 ~~~H~~y~~~~l~~lp~~~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~ 80 (307)
T cd02895 1 KKKHVKFFQRCLQLLPSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGL 80 (307)
T ss_pred ChHHHHHHHHHhhhCCchhhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcc
Confidence 47899999999999999999999999999999999999999765 5678999999999999 99999999876
Q ss_pred -------CCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCcccccc---CcccchhhhhhHHHHHHHHh
Q 013798 117 -------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD---AGEIDVRACYTAISVASILN 186 (436)
Q Consensus 117 -------~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~---~ge~D~r~tY~a~~~~~LL~ 186 (436)
+++|+.+||+|+++|.+|+++ ++.+||+++++||+++|++||||.+.+ ++|.|+|+||||+++++||+
T Consensus 81 ~~~~~~~~~~~l~~ty~Al~~L~lL~~~--~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~ 158 (307)
T cd02895 81 PGTASKYDTGNLAMTYFALLSLLILGDD--LSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD 158 (307)
T ss_pred ccccccCCcccHHHHHHHHHHHHHhCCc--hhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence 479999999999999999864 456899999999999999999999987 78999999999999999999
Q ss_pred hcc--HHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccc---cCCcccccceeeeecccccccccc
Q 013798 187 ILD--DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD---RLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 187 ~~~--~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~---~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
..+ ..+++++++||++||++||||+..|+.|+|+++||||+++|++++..+ .++.+++++||++||+.+|||+||
T Consensus 159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr 238 (307)
T cd02895 159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR 238 (307)
T ss_pred CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence 876 578999999999999999999999999999999999999999999976 689999999999999999999999
Q ss_pred cccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCcccccccccc
Q 013798 262 TNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHRERE 341 (436)
Q Consensus 262 ~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (436)
|||++|+|||||++++|.||+..
T Consensus 239 ~~k~~D~cysfw~~a~L~iL~~~--------------------------------------------------------- 261 (307)
T cd02895 239 PNKPADTCYSFWVGASLKLLDAF--------------------------------------------------------- 261 (307)
T ss_pred CCCCCccchhhHHHHHHHHcCcc---------------------------------------------------------
Confidence 99999999999999999999764
Q ss_pred chhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchh
Q 013798 342 PLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC 387 (436)
Q Consensus 342 ~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~ 387 (436)
.++|.++|++||+.|+|..+|||+++|++.||+|||||+|++|||+
T Consensus 262 ~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 262 QLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred cccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 2478899999999986677999999999999999999999999984
No 8
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-71 Score=525.41 Aligned_cols=310 Identities=33% Similarity=0.599 Sum_probs=281.7
Q ss_pred HHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCC----C----CCCCC
Q 013798 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDP----N----GGYGG 113 (436)
Q Consensus 42 ~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~----d----GGF~~ 113 (436)
+.|.++||++|++|+|+.+|.+|+++|.+|+.++||++++|++|+. ++..+++.+|+||++.|-. . -||.|
T Consensus 9 ~~~~~~kH~~ff~RhL~llP~~y~shd~~R~tiafFaisGLd~L~~-ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~G 87 (347)
T KOG0367|consen 9 SRFERKKHIKFFERHLQLLPSPYQSHDTNRLTIAFFAISGLDLLDA-LDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRG 87 (347)
T ss_pred chhhHHHHHHHHHHHHHhCCCcccccccchHHHHHHHHcchhhhhh-hhccchhHHHHHHHhceeccccCCCceeeeeee
Confidence 5799999999999999999999999999999999999999999997 5555689999999998732 1 25655
Q ss_pred C----------CCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCcccc-ccCcccchhhhhhHHHHH
Q 013798 114 G----------PGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-HDAGEIDVRACYTAISVA 182 (436)
Q Consensus 114 ~----------~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~-~~~ge~D~r~tY~a~~~~ 182 (436)
+ +.++||+++||+++++|.+||++ ++++||+.+++++..+|++||+|.. ..+++.|||++|||++|+
T Consensus 88 sr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGdd--LsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ 165 (347)
T KOG0367|consen 88 SRSMNIPIATNTYNEPHLAMTYTSLACLVILGDD--LSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAIC 165 (347)
T ss_pred eccccCCCCCCCCcchhHHHHHHHHHHHHHHcch--HhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHH
Confidence 3 23579999999999999999986 8999999999999999999999986 456899999999999999
Q ss_pred HHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhcc--cc----CCcccccceeeeeccccc
Q 013798 183 SILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA--DR----LDLDALIGWVVFRQGVEG 256 (436)
Q Consensus 183 ~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~--~~----~~~~~l~~wL~~rQ~~~G 256 (436)
+||+.+...+.++++.||++||++|||||..|+.|||+++||||||+|+++|++ +. .+++++++|+.+||..+|
T Consensus 166 ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sg 245 (347)
T KOG0367|consen 166 YMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSG 245 (347)
T ss_pred HHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccC
Confidence 999988889999999999999999999999999999999999999999999987 32 357899999999999999
Q ss_pred ccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccc
Q 013798 257 GFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQ 336 (436)
Q Consensus 257 GF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (436)
||+||+||.+|+||+||++++|+||+..
T Consensus 246 GfqGR~NKp~DTCYaFWigasLklL~~~---------------------------------------------------- 273 (347)
T KOG0367|consen 246 GFQGRTNKPVDTCYAFWIGASLKLLDAD---------------------------------------------------- 273 (347)
T ss_pred CcCCCCCCCchhHHHHHHHHHHHHccch----------------------------------------------------
Confidence 9999999999999999999999999875
Q ss_pred cccccchhhHHHHHHhhhhhccCC-CCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccccccCCccccccc
Q 013798 337 HREREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPV 415 (436)
Q Consensus 337 ~~~~~~~~~~~~l~~~il~~~Q~~-~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (436)
+++|...+++||++| |.+ .|||++.|+..||++|||++++|||+++... +.|+
T Consensus 274 -----~~~d~~~lr~fll~~-Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~~--------------------~~~v 327 (347)
T KOG0367|consen 274 -----WLIDKQVLRKFLLST-QDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEKG--------------------LSPV 327 (347)
T ss_pred -----HhhhHHHHHHHHHHh-hhhhcCcccCCCccCchHHHHHHHHHHHHHhcCCC--------------------CCCC
Confidence 457888999999998 655 6999999999999999999999999997664 5689
Q ss_pred chhHHHhhhhhhhhhhh
Q 013798 416 HPVFNIVLDRYHEAHEF 432 (436)
Q Consensus 416 ~p~~~i~~~~~~~~~~~ 432 (436)
||-.|++.+..++.+.-
T Consensus 328 ~p~l~~s~~~~~r~~~l 344 (347)
T KOG0367|consen 328 CPSLNMSMRASERCCDL 344 (347)
T ss_pred CccccccHHHHHHHHHH
Confidence 99999999999887653
No 9
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1.3e-67 Score=521.07 Aligned_cols=283 Identities=32% Similarity=0.619 Sum_probs=264.9
Q ss_pred HhhhhhHHHHHHhhh-hcCCccceecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccC-CCCCCCCCCCCCCchh
Q 013798 44 LQRKNHVEYLLRGLQ-QLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQ-DPNGGYGGGPGQMPHL 121 (436)
Q Consensus 44 l~r~~h~~yl~~~l~-~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q-~~dGGF~~~~~~~sh~ 121 (436)
|+++||++|++++++ .+|.+|.++|++|+|++||++++|.+|+. .+..+++++++||.+|| +++|||++.+++++|+
T Consensus 1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~-~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~ 79 (287)
T cd02894 1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQ-LERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHI 79 (287)
T ss_pred CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchH
Confidence 468899999999998 58999999999999999999999999997 45567899999999999 7899999999999999
Q ss_pred hHHHHHHHHHHhccCCCcccccc--chhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCe
Q 013798 122 ATTYAAVNALISLGGEKSLPSIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY 199 (436)
Q Consensus 122 ~~Ty~Al~~L~~Lg~~~~l~~id--~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~y 199 (436)
.+||+|+++|.+++. ++.+| ++++++||+++|++||||.+.+++++|+|+|||+++++.|++..+.++++++++|
T Consensus 80 ~~t~~a~~~L~ll~~---~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~ 156 (287)
T cd02894 80 LSTLSAIQILALYDL---LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDY 156 (287)
T ss_pred HHHHHHHHHHHHhhh---hhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHH
Confidence 999999999999974 45677 8999999999999999999999999999999999999999998778899999999
Q ss_pred eeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccccccccccchhccchhHHH
Q 013798 200 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA 279 (436)
Q Consensus 200 IlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~ 279 (436)
|++||++||||+..|+.|+|+++|||||++|.++|..+.++++++++||.+||..+|||+|||+|++|+|||||+++++.
T Consensus 157 l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~ 236 (287)
T cd02894 157 LLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLK 236 (287)
T ss_pred HHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccC
Q 013798 280 LLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD 359 (436)
Q Consensus 280 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~ 359 (436)
+|+.. .++|.+++++||+.|+|.
T Consensus 237 ~l~~~---------------------------------------------------------~~~~~~~l~~~l~~~q~~ 259 (287)
T cd02894 237 IIGRL---------------------------------------------------------HWINKNKLKNFILACQDE 259 (287)
T ss_pred Hhccc---------------------------------------------------------cccCHHHHHHHHHHhcCC
Confidence 98753 236889999999998446
Q ss_pred CCCccCCCCCCCCCcceeeeeccCCchh
Q 013798 360 PRGGLRDKLRKPRDYYHTCYCLSGLSIC 387 (436)
Q Consensus 360 ~~GGf~~~P~k~~D~~hT~~~la~Lsl~ 387 (436)
+.|||+++|++.||+|||||+|++|||+
T Consensus 260 ~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 260 EDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred CCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 7899999999999999999999999985
No 10
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=3.8e-64 Score=495.72 Aligned_cols=284 Identities=50% Similarity=0.943 Sum_probs=268.3
Q ss_pred hhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccC-CCCCCCCCCCCCCchhhHH
Q 013798 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQ-DPNGGYGGGPGQMPHLATT 124 (436)
Q Consensus 46 r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q-~~dGGF~~~~~~~sh~~~T 124 (436)
++||++||+++++.+|..+...|++|+|++||++++|.+|+..++.++++++++||++|| ++||||++.+++++|+..|
T Consensus 1 ~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T 80 (286)
T cd02890 1 REKHIKYLQRCLKLLPSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAST 80 (286)
T ss_pred ChHHHHHHHHHhhcCChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHH
Confidence 579999999999988999999999999999999999999998788889999999999999 9999999999999999999
Q ss_pred HHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeec
Q 013798 125 YAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQ 204 (436)
Q Consensus 125 y~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ 204 (436)
|+|+.+|.++|.+ .++.++++++++||.++|++||||.+.++++.|+|+|||+++++.+++....++++++++||++||
T Consensus 81 ~~al~~l~llg~~-~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q 159 (286)
T cd02890 81 YAAVLSLAILGDD-ALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ 159 (286)
T ss_pred HHHHHHHHHcCcc-ccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence 9999999999963 356788899999999999999999999999999999999999999999877789999999999999
Q ss_pred eeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeeccccc-ccccccccccccchhccchhHHHHHHH
Q 013798 205 TYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEG-GFQGRTNKLVDGCYSFWQGGVFALLRR 283 (436)
Q Consensus 205 ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~G-GF~gr~~k~~D~cYsfw~~~~l~lL~~ 283 (436)
++||||+..|+.|+|+.+|||||++|.+++..+.++++++++||.+||..+| ||+||++|++|+||+||+++++.+|+.
T Consensus 160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~ 239 (286)
T cd02890 160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGR 239 (286)
T ss_pred CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHccc
Confidence 9999999999999999999999999999999989999999999999999887 999999999999999999999999987
Q ss_pred HHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCc
Q 013798 284 FHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGG 363 (436)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GG 363 (436)
+. ++|.+++.+||+.|+|.++||
T Consensus 240 ~~---------------------------------------------------------~~~~~~l~~~l~~~~q~~~Gg 262 (286)
T cd02890 240 LH---------------------------------------------------------LIDQEKLREYILSCQQSEVGG 262 (286)
T ss_pred cc---------------------------------------------------------ccCHHHHHHHHHhhcCCCCCC
Confidence 51 267799999999777999999
Q ss_pred cCCCCCCCCCcceeeeeccCCchh
Q 013798 364 LRDKLRKPRDYYHTCYCLSGLSIC 387 (436)
Q Consensus 364 f~~~P~k~~D~~hT~~~la~Lsl~ 387 (436)
|+++|++.||+|||+|+|++|+++
T Consensus 263 f~~~~~~~~d~~~T~~~l~~lsl~ 286 (286)
T cd02890 263 FSDKPGKPPDLYHTYYGLSGLSLL 286 (286)
T ss_pred cCCCCCCCCCchhHHHHHHHHHcC
Confidence 999999999999999999999974
No 11
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.4e-48 Score=389.78 Aligned_cols=273 Identities=18% Similarity=0.305 Sum_probs=239.7
Q ss_pred hhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCccc
Q 013798 91 ADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEI 170 (436)
Q Consensus 91 ~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~ 170 (436)
+..+++.++|+.++|+.+|.|.........+..+|++|.+|.+|+. ++.++++++++||.++|+++|||.+.++.++
T Consensus 7 ~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~---~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~ 83 (316)
T PLN03201 7 ELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGK---LDDVDRDEVVSWVMRCQHESGGFGGNTGHDP 83 (316)
T ss_pred hccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCC---CccccHHHHHHHHHHhcCCCCCcCCCCCCcc
Confidence 4467899999999999888886543345677789999999999986 4678899999999999999999999988889
Q ss_pred chhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeee
Q 013798 171 DVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVF 250 (436)
Q Consensus 171 D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~ 250 (436)
+++.||+|++++.+++..+..+++++++||.+||++||||+..++.|+|.++||||+++|.+++..+.++++++++||.+
T Consensus 84 h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~s 163 (316)
T PLN03201 84 HILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVS 163 (316)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHH
Confidence 99999999999999987777889999999999999999999999999999999999999999998888899999999999
Q ss_pred ecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCC
Q 013798 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGD 330 (436)
Q Consensus 251 rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 330 (436)
+|++||||+++|++++|+||+||++++|+|++.+.
T Consensus 164 cq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~--------------------------------------------- 198 (316)
T PLN03201 164 CKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLH--------------------------------------------- 198 (316)
T ss_pred hcCCCCCcCCCCCCCCccceehHHHHHHHHcCccc---------------------------------------------
Confidence 99999999999999999999999999999998642
Q ss_pred CccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccc-------
Q 013798 331 EHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRA------- 403 (436)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~------- 403 (436)
.+|.+.+.+||+.| |..+|||++||+|.+|.|||||++++|+|++.....+ ...+.++
T Consensus 199 ------------~~d~~~l~~wL~~r-Q~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d--~~~l~~~i~~~q~~ 263 (316)
T PLN03201 199 ------------HVDKDLLGWWLCER-QVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWID--KDKLAKFILDCQDD 263 (316)
T ss_pred ------------cCCHHHHHHHHHHh-CCCCCCcCCCCCCCCchHHHHHHHHHHHHhccccccC--HHHHHHHHHHHcCC
Confidence 25678888897775 8889999999999999999999999999998764322 2222222
Q ss_pred ----cccCCcccccccchhHHHhhhhh
Q 013798 404 ----VLGPYSNVLEPVHPVFNIVLDRY 426 (436)
Q Consensus 404 ----~~~~~~~~~~~~~p~~~i~~~~~ 426 (436)
+.+.|++..++.|++|+|..-++
T Consensus 264 ~~GGf~~~p~~~~D~~ht~~~l~~lsl 290 (316)
T PLN03201 264 ENGGISDRPDDAVDVFHTFFGVAGLSL 290 (316)
T ss_pred CCCCcCCCcCCCCChhHHHHHHHHHHh
Confidence 34568899999999999987665
No 12
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1.2e-48 Score=399.92 Aligned_cols=240 Identities=17% Similarity=0.218 Sum_probs=214.4
Q ss_pred hhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCccc
Q 013798 91 ADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEI 170 (436)
Q Consensus 91 ~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~ 170 (436)
+..+++.++|+.++-..-+ ......+.+.++.+||+|.+|.+||.+ ++..+++++++||.++|+++|||.+.++.++
T Consensus 43 ~l~~~~H~~yl~~~l~~lp-~~~~~lDa~r~~~~Yw~L~sL~lLg~~--l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~ 119 (439)
T PLN02710 43 ELWREKHLEYLTRGLRQLG-PSFSVLDANRPWLCYWILHSIALLGES--LDDELENDTIDFLSRCQDPNGGYGGGPGQLP 119 (439)
T ss_pred cccHHHHHHHHHHHhhcCC-hhhhhhhhhhHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHHhcCCCcCCCCCCCCCc
Confidence 3468899999988865421 111123467899999999999999974 6777889999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHhh---ccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccce
Q 013798 171 DVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGW 247 (436)
Q Consensus 171 D~r~tY~a~~~~~LL~~---~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~w 247 (436)
++++||+|+.++.+||. +..++++++++||++||++||||+..+++|+|++.|||||+++.+++..+..+++++++|
T Consensus 120 hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~ 199 (439)
T PLN02710 120 HLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDY 199 (439)
T ss_pred cHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHH
Confidence 99999999999999985 345789999999999999999999999999999999999999999999888889999999
Q ss_pred eeeecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCC
Q 013798 248 VVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISS 327 (436)
Q Consensus 248 L~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 327 (436)
|.+||+.||||+|+|++++|+||+||++++|.||+.+.
T Consensus 200 I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~------------------------------------------ 237 (439)
T PLN02710 200 ILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVD------------------------------------------ 237 (439)
T ss_pred HHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCcc------------------------------------------
Confidence 99999999999999999999999999999999997642
Q ss_pred CCCCccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchhhccc
Q 013798 328 QGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSW 391 (436)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~ 391 (436)
.+|.++|.+||+.| |..+|||+|||+|.+|+|||||++++|+|++...
T Consensus 238 ---------------~id~~~l~~WL~~r-Q~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~ 285 (439)
T PLN02710 238 ---------------RLDLPSLINWVVFR-QGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLV 285 (439)
T ss_pred ---------------ccCHHHHHHHHHHh-cCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHh
Confidence 35779999999986 8889999999999999999999999999998653
No 13
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=2.1e-48 Score=385.90 Aligned_cols=271 Identities=19% Similarity=0.260 Sum_probs=233.5
Q ss_pred hcchhHhhhccCCC-CCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccch
Q 013798 94 EDRTIEFLSRCQDP-NGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDV 172 (436)
Q Consensus 94 ~~~~i~~l~~~q~~-dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~ 172 (436)
++++++|+.+|... .++|... +.++++.+|+++.+|.+||.+ +..++++++++||.++|+++|||.+.++++.|+
T Consensus 1 ~~~h~~~~~~~l~~~p~~~~~~--d~~~~~~~y~~l~~l~lL~~~--~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~ 76 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSFTSL--DASRPWLLYWILHSLELLGEE--LDQSYADDVISFLRRCQNPSGGFGGGPGQLPHL 76 (299)
T ss_pred ChHHHHHHHHHhhcCCcccccc--ccccHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccH
Confidence 46889999999874 4667654 346899999999999999963 566778999999999999999999999889999
Q ss_pred hhhhhHHHHHHHHhh---ccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceee
Q 013798 173 RACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249 (436)
Q Consensus 173 r~tY~a~~~~~LL~~---~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~ 249 (436)
++||+|+.++.+++. ....+++++++||++||++||||+..|+.|+|.++|||||+++.+++..++.+++++++||.
T Consensus 77 ~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~ 156 (299)
T cd02893 77 ATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYIL 156 (299)
T ss_pred HHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 999999999999985 34678899999999999999999999999999999999999999999887888999999999
Q ss_pred eecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCC
Q 013798 250 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQG 329 (436)
Q Consensus 250 ~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 329 (436)
++|++||||+++|++++|+||+||++++|+||+...
T Consensus 157 ~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~-------------------------------------------- 192 (299)
T cd02893 157 SCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPD-------------------------------------------- 192 (299)
T ss_pred HcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCcc--------------------------------------------
Confidence 999999999999999999999999999999997642
Q ss_pred CCccccccccccchhhHHHHHHhhhhhccCC-CCccCCCCCCCCCcceeeeeccCCchhhccccCC-----------CCC
Q 013798 330 DEHCHFQHREREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKD-----------EDS 397 (436)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~-~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~-----------~~~ 397 (436)
.+|.+++.+||+.| |.+ +|||+|||+|.+|+|||||++++|++++...... .+.
T Consensus 193 -------------~~d~~~l~~wl~~~-q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~ 258 (299)
T cd02893 193 -------------KLDLESLLRWLVAR-QMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQ 258 (299)
T ss_pred -------------ccCHHHHHHHHHhh-cCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCH
Confidence 25779999999987 766 8999999999999999999999999998753211 112
Q ss_pred CCCccc-----------cccCCcccccccchhHHHhhhhh
Q 013798 398 SPLPRA-----------VLGPYSNVLEPVHPVFNIVLDRY 426 (436)
Q Consensus 398 ~~~~~~-----------~~~~~~~~~~~~~p~~~i~~~~~ 426 (436)
+.+.++ +.+.|++..+++|++|++..-++
T Consensus 259 ~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Lsl 298 (299)
T cd02893 259 EALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLSI 298 (299)
T ss_pred HHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHhc
Confidence 222222 23457889999999999986543
No 14
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=2.7e-46 Score=369.30 Aligned_cols=270 Identities=20% Similarity=0.335 Sum_probs=232.4
Q ss_pred hhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhc-CCCCccccccCcccc
Q 013798 93 LEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMK-DPSGAFRMHDAGEID 171 (436)
Q Consensus 93 ~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q-~~dGgF~~~~~ge~D 171 (436)
++++.++|+.+|.+....+.....+.++++.||+++++|.+||. +..++++++++||+++| +++|||.+.+..+++
T Consensus 2 ~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~---~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~ 78 (287)
T cd02894 2 LLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQ---LERLNREEIIEFVKSCQDNEDGGFGGSPGHDPH 78 (287)
T ss_pred CHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCC---CchhhHHHHHHHHHHHhcCCCCCCCCCCCCcch
Confidence 36789999999988544444444457899999999999999996 35678999999999999 679999998888899
Q ss_pred hhhhhhHHHHHHHHhhccHHH--hhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceee
Q 013798 172 VRACYTAISVASILNILDDEL--LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249 (436)
Q Consensus 172 ~r~tY~a~~~~~LL~~~~~~~--~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~ 249 (436)
++.||+++.++.+++....++ ++++++||++||++||||+..|+.|+|..+||||+++|++++..+.++++++++||.
T Consensus 79 ~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~ 158 (287)
T cd02894 79 ILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLL 158 (287)
T ss_pred HHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 999999999999987555455 899999999999999999999999999999999999999999888889999999999
Q ss_pred eecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCC
Q 013798 250 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQG 329 (436)
Q Consensus 250 ~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 329 (436)
++|++||||++|+++++|+||+||++++|.+|+...
T Consensus 159 ~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~-------------------------------------------- 194 (287)
T cd02894 159 SCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLD-------------------------------------------- 194 (287)
T ss_pred HcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCccc--------------------------------------------
Confidence 999999999999999999999999999999997642
Q ss_pred CCccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccc------
Q 013798 330 DEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRA------ 403 (436)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~------ 403 (436)
.+|.+++.+||+.| |.++|||++||+|.||+|||||++++|++++...+.+ .+.+.++
T Consensus 195 -------------~~~~~~~~~~L~~~-q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~--~~~l~~~l~~~q~ 258 (287)
T cd02894 195 -------------LIDRDRLGWWLCER-QLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWIN--KNKLKNFILACQD 258 (287)
T ss_pred -------------ccCHHHHHHHHHHh-CCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccC--HHHHHHHHHHhcC
Confidence 24678999999986 9989999999999999999999999999998764322 1222222
Q ss_pred -----cccCCcccccccchhHHHhhhh
Q 013798 404 -----VLGPYSNVLEPVHPVFNIVLDR 425 (436)
Q Consensus 404 -----~~~~~~~~~~~~~p~~~i~~~~ 425 (436)
+.+.|++..++.|++|++..-+
T Consensus 259 ~~~GGf~~~p~~~~D~~ht~~~l~~Ls 285 (287)
T cd02894 259 EEDGGFADRPGNMVDVFHTFFGLAGLS 285 (287)
T ss_pred CCCCCcCCCCCCCCChhHHHHHHHHHH
Confidence 2345778889999999987543
No 15
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=7.5e-44 Score=351.28 Aligned_cols=269 Identities=22% Similarity=0.324 Sum_probs=234.1
Q ss_pred hcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhc-CCCCccccccCcccch
Q 013798 94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMK-DPSGAFRMHDAGEIDV 172 (436)
Q Consensus 94 ~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q-~~dGgF~~~~~ge~D~ 172 (436)
++++++||.++++.. .+.....+.++++.||++|.+|.+||.+ +...+++++++||+++| ++||||...+..++|+
T Consensus 1 ~~~h~~~l~~~~~~~-~~~~~~~~~~~~~~~y~~l~~l~ll~~~--~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~ 77 (286)
T cd02890 1 REKHIKYLQRCLKLL-PSSYTSLDASRLWLLYWILSSLDLLGED--LDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHL 77 (286)
T ss_pred ChHHHHHHHHHhhcC-ChhhhhHHhhHHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccH
Confidence 467899999999877 4555556789999999999999999973 56778899999999999 9999999988889999
Q ss_pred hhhhhHHHHHHHHhh--ccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeee
Q 013798 173 RACYTAISVASILNI--LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVF 250 (436)
Q Consensus 173 r~tY~a~~~~~LL~~--~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~ 250 (436)
+.||+++.++.+++. .+..+++++++||.+||++||||+..|+.|+|..+|||||++|.+++.....+++++++||.+
T Consensus 78 ~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~ 157 (286)
T cd02890 78 ASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILS 157 (286)
T ss_pred HHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHH
Confidence 999999999999987 466888999999999999999999999999999999999999999998877889999999999
Q ss_pred ecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCC
Q 013798 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGD 330 (436)
Q Consensus 251 rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 330 (436)
+|.+||||++++++++|+||+||++++|.+|+...
T Consensus 158 ~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~--------------------------------------------- 192 (286)
T cd02890 158 CQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLD--------------------------------------------- 192 (286)
T ss_pred hCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCc---------------------------------------------
Confidence 99999999999999999999999999999997642
Q ss_pred CccccccccccchhhHHHHHHhhhhhccCCCC-ccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccc------
Q 013798 331 EHCHFQHREREPLFHSIALQRYLLLCSQDPRG-GLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRA------ 403 (436)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~G-Gf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~------ 403 (436)
..|.+++.+||+.| |.++| ||+++|+|.||+|||||++++|++++...+.+ .+.+.++
T Consensus 193 ------------~~~~~~~~~~L~~~-q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~--~~~l~~~l~~~~q 257 (286)
T cd02890 193 ------------LIDKERLLRWLVER-QLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLID--QEKLREYILSCQQ 257 (286)
T ss_pred ------------ccCHHHHHHHHHHh-CCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccC--HHHHHHHHHhhcC
Confidence 24678999999997 87765 99999999999999999999999998763211 1111111
Q ss_pred -----cccCCcccccccchhHHHhhhh
Q 013798 404 -----VLGPYSNVLEPVHPVFNIVLDR 425 (436)
Q Consensus 404 -----~~~~~~~~~~~~~p~~~i~~~~ 425 (436)
+.+.|++..++.|++|++..-.
T Consensus 258 ~~~Ggf~~~~~~~~d~~~T~~~l~~ls 284 (286)
T cd02890 258 SEVGGFSDKPGKPPDLYHTYYGLSGLS 284 (286)
T ss_pred CCCCCcCCCCCCCCCchhHHHHHHHHH
Confidence 3345788899999999997654
No 16
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=7.2e-43 Score=347.49 Aligned_cols=238 Identities=21% Similarity=0.324 Sum_probs=216.7
Q ss_pred HHhhhhhHHHHHHhhh---hcCCcccee------------cCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCC
Q 013798 43 ELQRKNHVEYLLRGLQ---QLGPSFCSL------------DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDP 107 (436)
Q Consensus 43 ~l~r~~h~~yl~~~l~---~lp~~~~~~------------d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~ 107 (436)
..+|++.++|+.++.. ...++|.+. +..+++.+||++.+|.+|+.+.+..+++++++||.+||++
T Consensus 48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~ 127 (307)
T cd02895 48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP 127 (307)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence 6889999999999872 345677652 3578999999999999999765556889999999999999
Q ss_pred CCCCCCCC---CCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHH
Q 013798 108 NGGYGGGP---GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASI 184 (436)
Q Consensus 108 dGGF~~~~---~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~L 184 (436)
||||++.+ +.++|+..||+||++|.+|+..+. +.+|++++++||.++|++||||...+++|+|.++|||+++++.+
T Consensus 128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~-~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~l 206 (307)
T cd02895 128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE-EDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSL 206 (307)
T ss_pred CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc-ccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHH
Confidence 99999987 789999999999999999996421 35789999999999999999999999999999999999999999
Q ss_pred Hhhcc---HHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeecc-ccccccc
Q 013798 185 LNILD---DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQG 260 (436)
Q Consensus 185 L~~~~---~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~-~~GGF~g 260 (436)
|+..+ .++.+++++||++||+.+|||+++|+.++|+.||||++|+|+++++.+.+|++++.+||.++|. .+|||++
T Consensus 207 L~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~ 286 (307)
T cd02895 207 LGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAK 286 (307)
T ss_pred cCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCC
Confidence 99865 6889999999999999999999999999999999999999999999888999999999999886 6899999
Q ss_pred ccccccccchhccchhHHHHH
Q 013798 261 RTNKLVDGCYSFWQGGVFALL 281 (436)
Q Consensus 261 r~~k~~D~cYsfw~~~~l~lL 281 (436)
+|+|.+|.|+|||++++|.|+
T Consensus 287 ~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 287 NPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred CCCCCCChhHHHHHHHHHHhC
Confidence 999999999999999999874
No 17
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-44 Score=336.44 Aligned_cols=268 Identities=20% Similarity=0.276 Sum_probs=233.0
Q ss_pred cccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccC
Q 013798 142 SINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGG 221 (436)
Q Consensus 142 ~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~ 221 (436)
.+.++++++||.+.-...-+|.........+...||.+.++.||+.+....+++++.|+++||+.+|||+..||..+|..
T Consensus 17 ~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll 96 (329)
T KOG0366|consen 17 ELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLL 96 (329)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHHH
Confidence 34468899999997666667776544456788899999999999998888899999999999999999999999999999
Q ss_pred cchhhHHHHHhhhccccCCcccccceeeeecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCccc
Q 013798 222 YTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAE 301 (436)
Q Consensus 222 ~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~ 301 (436)
+|++||..|++....+.+|+++++.|+...|+++|.|.|..+.++|+++|||++++|.||+.+..++.+.+.+|+.+|.|
T Consensus 97 ~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN 176 (329)
T KOG0366|consen 97 YTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYN 176 (329)
T ss_pred HHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888889999999
Q ss_pred cc-----CCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcce
Q 013798 302 CS-----IDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYH 376 (436)
Q Consensus 302 ~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~h 376 (436)
++ .||+|||+|+.+||+..+ +|+ +....+|++.+- |||+-||.+.||+++||.|+||+||
T Consensus 177 ~DGGFG~~pGaESHagqifcCvgaL--ai~------------~~L~~vd~d~lg-wwlceRQ~~sGGLNGRpeKlpDVCY 241 (329)
T KOG0366|consen 177 FDGGFGCRPGAESHAGQIFCCVGAL--AIT------------GKLHLVDRDLLG-WWLCERQLPSGGLNGRPEKLPDVCY 241 (329)
T ss_pred cCCCcCCCCCcccccceehhhHHHH--HHc------------cchhhcCHHHHH-HHHHhccCCCCCCCCCcccCcchhh
Confidence 98 899999999999986544 111 234567866665 5577789999999999999999999
Q ss_pred eeeeccCCchhhccccCCCCCCCCccc-----------cccCCcccccccchhHHHhhhhh
Q 013798 377 TCYCLSGLSICQHSWLKDEDSSPLPRA-----------VLGPYSNVLEPVHPVFNIVLDRY 426 (436)
Q Consensus 377 T~~~la~Lsl~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~p~~~i~~~~~ 426 (436)
+||+||+|+|+++..|.+ +..+.++ +.++|+|..+++|++|+|..-++
T Consensus 242 SwWvlsSL~iigrl~wId--~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSL 300 (329)
T KOG0366|consen 242 SWWVLSSLAIIGRLHWID--REKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSL 300 (329)
T ss_pred HHHHHhHHHHhhhhhhcc--HHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhh
Confidence 999999999999988754 2333333 45679999999999999986553
No 18
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-36 Score=286.64 Aligned_cols=291 Identities=20% Similarity=0.245 Sum_probs=241.9
Q ss_pred HHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchh
Q 013798 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHL 121 (436)
Q Consensus 42 ~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~ 121 (436)
.++-|++|.+|..+++..+|.+....+..+...++..+..|. ...++
T Consensus 9 ~~~~~~~~~~f~~~~l~L~~~~H~~yl~~~~~~~~~~~~~l~---------------------------------~~~~~ 55 (342)
T COG5029 9 SEVVRAKHRKFFSRHLQLLPDKHIGYLVERMAITFPSLFGLL---------------------------------EASRL 55 (342)
T ss_pred hHHHHHHHHHhcCcccccccchHHHHHHHhhhccccchhhhh---------------------------------hhcch
Confidence 368899999999998888887777665544333222222111 12456
Q ss_pred hHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHh---hccHHHhhhccC
Q 013798 122 ATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN---ILDDELLQNVGN 198 (436)
Q Consensus 122 ~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~---~~~~~~~~~~~~ 198 (436)
.+.|+...+|.+++.. ...+++++.+.+++.++.++|+|.+.++.++.+-.||.|+.++.|++ .++..+++++.+
T Consensus 56 ~~iyw~~~sl~~l~~~--~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~ 133 (342)
T COG5029 56 NTIYWGDNSLWMLKRY--DKTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLAS 133 (342)
T ss_pred hhhhhccchHHHhcCc--chhhhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 7788999999999863 23678899999999999999999999999999999999999999985 455677889999
Q ss_pred eeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccccccccccchhccchhHH
Q 013798 199 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 278 (436)
Q Consensus 199 yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l 278 (436)
||..||++||+|...-.+|+|....|+||+.|+|+|..+..+.+..++||.++|+.||||..-|+.++++-|+||++|++
T Consensus 134 fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaal 213 (342)
T COG5029 134 FISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAAL 213 (342)
T ss_pred HHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHH
Confidence 99999999999999888999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhh-HHHHHHhhhhhc
Q 013798 279 ALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFH-SIALQRYLLLCS 357 (436)
Q Consensus 279 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~il~~~ 357 (436)
+||+.+.. +| .|.+.+||.. |
T Consensus 214 alL~~Ld~---------------------------------------------------------ls~~E~l~~Wl~~-R 235 (342)
T COG5029 214 ALLGKLDK---------------------------------------------------------LSDVEKLIRWLAE-R 235 (342)
T ss_pred HHHhcccc---------------------------------------------------------cchHHHHHHHHHH-c
Confidence 99998742 34 5889988666 7
Q ss_pred cCCCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccc-----------cccCCcccccccchhHHHhhhhh
Q 013798 358 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRA-----------VLGPYSNVLEPVHPVFNIVLDRY 426 (436)
Q Consensus 358 Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~p~~~i~~~~~ 426 (436)
|-+.|||+|||+|.+|.||+||++++|+|++...+.+ ...+.++ +.++|++..+.+|++|++..-++
T Consensus 236 Q~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in--~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl 313 (342)
T COG5029 236 QLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFIN--TEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSL 313 (342)
T ss_pred ccccCCcCCCcccCccchhhhhhcchHHhcchhhhcC--HHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998654422 1122222 44579999999999999876655
Q ss_pred h
Q 013798 427 H 427 (436)
Q Consensus 427 ~ 427 (436)
.
T Consensus 314 ~ 314 (342)
T COG5029 314 I 314 (342)
T ss_pred h
Confidence 3
No 19
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-35 Score=282.42 Aligned_cols=277 Identities=16% Similarity=0.210 Sum_probs=232.2
Q ss_pred hhhhcchhHhhhccCCCC-CCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcc
Q 013798 91 ADLEDRTIEFLSRCQDPN-GGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGE 169 (436)
Q Consensus 91 ~~~~~~~i~~l~~~q~~d-GGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge 169 (436)
.+.+++...||.+.-..- --|.- -+-+..|+.||-+.+|++|+.. ++....++++.||..+|.|.|||.+.|++.
T Consensus 71 ~~~r~kH~~YL~~~Lr~Lp~~~~~--LDASR~Wm~YWil~sl~lL~~~--~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl 146 (423)
T KOG0365|consen 71 PIFRQKHLMYLDKMLRQLPSQYTC--LDASRPWMCYWILNSLALLDEW--LDDDVKENAIDFLFTCQGPEGGFGGGPGQL 146 (423)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccc--cccCcchhHHHHHHHHHHhcCc--CCHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 344778888887643221 12221 1357889999999999999963 555566889999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHhh---ccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccc
Q 013798 170 IDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246 (436)
Q Consensus 170 ~D~r~tY~a~~~~~LL~~---~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~ 246 (436)
+++..||.|+.++.+++. .+.++++++.+||.+++++||||....++|.|+...|||++.-.+++-+.+.-.+.+.+
T Consensus 147 ~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~ 226 (423)
T KOG0365|consen 147 PHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLD 226 (423)
T ss_pred hhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 999999999999988864 34689999999999999999999999999999999999999999999887767889999
Q ss_pred eeeeecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCC
Q 013798 247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEIS 326 (436)
Q Consensus 247 wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 326 (436)
||.++|+.||||.|-|.-++++-|+||++|+++||+.+.
T Consensus 227 wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d----------------------------------------- 265 (423)
T KOG0365|consen 227 WIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMD----------------------------------------- 265 (423)
T ss_pred HHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhh-----------------------------------------
Confidence 999999999999999999999999999999999999874
Q ss_pred CCCCCccccccccccchhhHHHHHHhhhhhccCC-CCccCCCCCCCCCcceeeeeccCCchhhccccC-CC-------CC
Q 013798 327 SQGDEHCHFQHREREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK-DE-------DS 397 (436)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~-~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~-~~-------~~ 397 (436)
.+|.++|.+|..+ ||.+ +|||.||.||++|.|||||..+...|++..... +. ++
T Consensus 266 ----------------~ln~~~Ll~W~~~-RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~ 328 (423)
T KOG0365|consen 266 ----------------QLNLEKLLEWAVR-RQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNK 328 (423)
T ss_pred ----------------hhCHHHHHHHHHH-hhhhhhccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCH
Confidence 2688999999887 6997 899999999999999999999999999875431 11 11
Q ss_pred CCCccc-----------cccCCcccccccchhHHHhhhhhhhh
Q 013798 398 SPLPRA-----------VLGPYSNVLEPVHPVFNIVLDRYHEA 429 (436)
Q Consensus 398 ~~~~~~-----------~~~~~~~~~~~~~p~~~i~~~~~~~~ 429 (436)
..+.++ +.++|+...+-+|++|++..-+++.-
T Consensus 329 ~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~ 371 (423)
T KOG0365|consen 329 EALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQH 371 (423)
T ss_pred HHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcchhHHhh
Confidence 222233 33568888999999999988776543
No 20
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.97 E-value=6.8e-31 Score=254.32 Aligned_cols=281 Identities=32% Similarity=0.528 Sum_probs=235.1
Q ss_pred hhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhccc-----chhhhhcchhHhhhccCCCCCCCCCCCCC-Cch
Q 013798 47 KNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEF-----VDADLEDRTIEFLSRCQDPNGGYGGGPGQ-MPH 120 (436)
Q Consensus 47 ~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~-----~~~~~~~~~i~~l~~~q~~dGGF~~~~~~-~sh 120 (436)
++|++||++.....+..+......+++.+++++.++..++.. .....++++++||.++|++||||+..++. .++
T Consensus 2 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~ 81 (300)
T cd00688 2 EKHLKYLLRYPYGDGHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPS 81 (300)
T ss_pred hhHHHHHHHccccCCCccccCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcc
Confidence 578999998665555555556778999999999999888742 34567899999999999999999988776 899
Q ss_pred hhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCc-------ccchhhhhhHHHHHHHHhhcc-HHH
Q 013798 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-------EIDVRACYTAISVASILNILD-DEL 192 (436)
Q Consensus 121 ~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~g-------e~D~r~tY~a~~~~~LL~~~~-~~~ 192 (436)
+..|++++.+|..++..........+++++||.+.|++||+|...... ..+++.+++++.++.+++... ...
T Consensus 82 ~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~ 161 (300)
T cd00688 82 LWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPL 161 (300)
T ss_pred hHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcHH
Confidence 999999999999998632223344678999999999999999875432 578888999998888887643 567
Q ss_pred hhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeeccccccccccc---ccccccc
Q 013798 193 LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT---NKLVDGC 269 (436)
Q Consensus 193 ~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~---~k~~D~c 269 (436)
++++++||.++|+.|||| .++.++|...|++++.+|..++.......+++++||.++|..+|||.... .+..|.|
T Consensus 162 ~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~ 239 (300)
T cd00688 162 IEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSC 239 (300)
T ss_pred HHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchH
Confidence 899999999999999999 68889999999999999999987645568899999999999999999875 7889999
Q ss_pred hhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHH
Q 013798 270 YSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIAL 349 (436)
Q Consensus 270 Ysfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 349 (436)
+++|++.+|..++... .....+++
T Consensus 240 ~~~~~~~aL~~~~~~~--------------------------------------------------------~~~~~~~~ 263 (300)
T cd00688 240 YTEWAAYALLALGKLG--------------------------------------------------------DLEDAEKL 263 (300)
T ss_pred HHHHHHHHHHHHhhhc--------------------------------------------------------CcccHHHH
Confidence 9999998888776530 01234678
Q ss_pred HHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCch
Q 013798 350 QRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSI 386 (436)
Q Consensus 350 ~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl 386 (436)
.+||+.. |.++|||..+|.+.+|.+||+|+|.+|+.
T Consensus 264 ~~~L~~~-q~~~G~w~~~~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 264 VKWLLSQ-QNEDGGFSSKPGKSYDTQHTVFALLALSL 299 (300)
T ss_pred HHHHHhc-cCCCCCcCcCCCCCCcchhhHHHHHHHhc
Confidence 8998884 99999999999999999999999999875
No 21
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-27 Score=227.66 Aligned_cols=194 Identities=20% Similarity=0.261 Sum_probs=169.4
Q ss_pred HHHhhhhhHHHHHHhhhhcCCccceec---CCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCC
Q 013798 42 MELQRKNHVEYLLRGLQQLGPSFCSLD---ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQM 118 (436)
Q Consensus 42 ~~l~r~~h~~yl~~~l~~lp~~~~~~d---~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~ 118 (436)
.+++|+...+|+..+.+ ..++|.+.. .++++++|.++..+.+|+. ....+.++.+.||++||+.||||+..|+.+
T Consensus 123 srlDrksil~~v~~~Q~-~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~-~s~iD~ek~~~yI~~~q~YdgGfg~~pg~E 200 (347)
T KOG0367|consen 123 SRLDRKSILRFVSACQR-PDGSFVSINVGSESDMRFVYCAVAICYMLDF-WSGIDKEKLIGYIRSSQRYDGGFGQHPGGE 200 (347)
T ss_pred hhhhHHHHHHHHHHhcC-CCCceeecCCCCchhhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHhhccccccccCCCCC
Confidence 47999999999998654 458998742 2589999999999999995 444568899999999999999999999999
Q ss_pred chhhHHHHHHHHHHhccCC--Cc-cccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhh
Q 013798 119 PHLATTYAAVNALISLGGE--KS-LPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQN 195 (436)
Q Consensus 119 sh~~~Ty~Al~~L~~Lg~~--~~-l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~ 195 (436)
||..+||||+++|+++|.- +. +...+.+++++|+..+|..+|||.|++++.+|+++.||..+++.||+....++.+.
T Consensus 201 sHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~ 280 (347)
T KOG0367|consen 201 SHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQV 280 (347)
T ss_pred CCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHH
Confidence 9999999999999998863 22 23334588999999999999999999999999977777777888898887888999
Q ss_pred ccCeeeeecee-ccccCCCCCCccccCcchhhHHHHHhhhccc
Q 013798 196 VGNYILSCQTY-EGGIAGEPGSEAHGGYTFCGLAAMILINEAD 237 (436)
Q Consensus 196 ~~~yIlscQ~~-dGGFg~~pg~esh~~~TycAlaaL~llg~~~ 237 (436)
..+||++||.. -|||+..|+..||+.|||.++++|++++...
T Consensus 281 lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~~ 323 (347)
T KOG0367|consen 281 LRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEKG 323 (347)
T ss_pred HHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCCC
Confidence 99999999987 4999999999999999999999999998753
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.88 E-value=1.4e-22 Score=196.18 Aligned_cols=232 Identities=22% Similarity=0.294 Sum_probs=194.5
Q ss_pred HHhhhhhHHHHHHhhhhcCCccceec---CCCcchhHHHHHHHHhhccc--chhhhhcchhHhhhccCCCCCCCCCCCCC
Q 013798 43 ELQRKNHVEYLLRGLQQLGPSFCSLD---ANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPGQ 117 (436)
Q Consensus 43 ~l~r~~h~~yl~~~l~~lp~~~~~~d---~~r~~~~yw~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~ 117 (436)
.-..+++++||.+. +...++|.... ..++|.+++++.+|..++.. ++.+.++++++||.++|++||||......
T Consensus 51 ~~~~~~~~~~l~~~-q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~ 129 (300)
T cd00688 51 DENIEKGIQRLLSY-QLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPG 129 (300)
T ss_pred hHHHHHHHHHHHhc-cCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCC
Confidence 46778899999884 45567775533 45889999999999999863 45567899999999999999999876543
Q ss_pred -------CchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccH
Q 013798 118 -------MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDD 190 (436)
Q Consensus 118 -------~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~ 190 (436)
.+++..|++++.+|..++... .....+++++||.+.|+++|+| .++++.|+..+++++.++.+++....
T Consensus 130 ~~~~~~~~~~~~~t~~al~aL~~~~~~~--~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~ 205 (300)
T cd00688 130 NHRIGGDESDVRLTAYALIALALLGKLD--PDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDS 205 (300)
T ss_pred CCcccCCCCcccHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcch
Confidence 688999999999999998531 1345678999999999999999 55667888788888888877776545
Q ss_pred HHhhhccCeeeeeceeccccCCCC---CCccccCcchhhHHHHHhhhcc-ccCCcccccceeeeeccccccccccccccc
Q 013798 191 ELLQNVGNYILSCQTYEGGIAGEP---GSEAHGGYTFCGLAAMILINEA-DRLDLDALIGWVVFRQGVEGGFQGRTNKLV 266 (436)
Q Consensus 191 ~~~~~~~~yIlscQ~~dGGFg~~p---g~esh~~~TycAlaaL~llg~~-~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~ 266 (436)
..++++++||+++|+.+|||+..+ ..+++..+|++++.+|..++.. +....+++++||.++|..+|||.+++.+..
T Consensus 206 ~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~ 285 (300)
T cd00688 206 PDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSY 285 (300)
T ss_pred HHHHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCC
Confidence 778999999999999999999875 7788999999999999998875 455678999999999999999999999999
Q ss_pred ccchhccchhHHH
Q 013798 267 DGCYSFWQGGVFA 279 (436)
Q Consensus 267 D~cYsfw~~~~l~ 279 (436)
|+++++|++.+|.
T Consensus 286 ~~~~t~~al~aL~ 298 (300)
T cd00688 286 DTQHTVFALLALS 298 (300)
T ss_pred cchhhHHHHHHHh
Confidence 9999999998875
No 23
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.75 E-value=7.7e-19 Score=148.66 Aligned_cols=109 Identities=31% Similarity=0.544 Sum_probs=90.9
Q ss_pred hHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhH--HHHHHhhcCCCCccccccC-cccchhh
Q 013798 98 IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKV--YTFLKCMKDPSGAFRMHDA-GEIDVRA 174 (436)
Q Consensus 98 i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~--~~~L~~~Q~~dGgF~~~~~-ge~D~r~ 174 (436)
|+||+++|++||||+.. +..+++..|+.|+.+|..++.. .+++++ ++||.++|++||+|...+. ...|++.
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~-----~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~ 74 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEE-----PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYT 74 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSH-----HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCc-----ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHH
Confidence 68999999999999987 7899999999999999999863 246788 9999999999999999874 5678999
Q ss_pred hhhHHHHHHHHhhccH-HHhhhccCeeeeeceeccccCC
Q 013798 175 CYTAISVASILNILDD-ELLQNVGNYILSCQTYEGGIAG 212 (436)
Q Consensus 175 tY~a~~~~~LL~~~~~-~~~~~~~~yIlscQ~~dGGFg~ 212 (436)
||+++.++.+++.... +.++++++||++||++||||+.
T Consensus 75 t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 75 TYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 9999999988876553 6789999999999999999974
No 24
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.74 E-value=5e-18 Score=171.38 Aligned_cols=211 Identities=17% Similarity=0.219 Sum_probs=144.2
Q ss_pred hhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcc-cchhhhhcchhHhhhccC--------------CCCCCCC
Q 013798 48 NHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGE-FVDADLEDRTIEFLSRCQ--------------DPNGGYG 112 (436)
Q Consensus 48 ~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~-~~~~~~~~~~i~~l~~~q--------------~~dGGF~ 112 (436)
+-++||.+..+ .++++.... +..+.+.+++.+|...+. +-..+.++++++||.+.| .++|||+
T Consensus 3 ~~~~~L~~~Q~-~dG~W~~~~-~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~ 80 (348)
T cd02889 3 RALDFLLSLQA-PDGHWPGEY-SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWA 80 (348)
T ss_pred hHHHHHHHhcc-CCCCccccC-CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCc
Confidence 45688887443 355554433 677889999999988875 223456789999999999 6889887
Q ss_pred CCCC--CCchhhHHHHHHHHHHhccCCC----ccccccchhHHHHHHhhcCCCCccccccCc------------------
Q 013798 113 GGPG--QMPHLATTYAAVNALISLGGEK----SLPSINRSKVYTFLKCMKDPSGAFRMHDAG------------------ 168 (436)
Q Consensus 113 ~~~~--~~sh~~~Ty~Al~~L~~Lg~~~----~l~~id~~~~~~~L~~~Q~~dGgF~~~~~g------------------ 168 (436)
.... ..++...|..++.+|..++... ....-...++++||.+.|++||+|......
T Consensus 81 y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (348)
T cd02889 81 FSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMI 160 (348)
T ss_pred ccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCcc
Confidence 5432 2355668888888887776421 011112357899999999999999742110
Q ss_pred -ccchhhhhhHHHHHHHHhhcc-H------HHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccc-cC
Q 013798 169 -EIDVRACYTAISVASILNILD-D------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RL 239 (436)
Q Consensus 169 -e~D~r~tY~a~~~~~LL~~~~-~------~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~-~~ 239 (436)
..++..|-.++.++..++... . ..++++++||+++|+.||||....+ ..+...|+.++.+|..+|... ..
T Consensus 161 ~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~ 239 (348)
T cd02889 161 DPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDENSP 239 (348)
T ss_pred CCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCcCcH
Confidence 112222333344444444322 1 4578999999999999999964332 345667888888888888642 34
Q ss_pred Ccccccceeeeecccccccccc
Q 013798 240 DLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 240 ~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
.++++++||.++|.++|||...
T Consensus 240 ~~~~~~~~L~~~Q~~dG~w~~~ 261 (348)
T cd02889 240 YVRKACDWLLSKQNPDGGWGES 261 (348)
T ss_pred HHHHHHHHHHHccCCCCCcCCc
Confidence 5688999999999999999764
No 25
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.73 E-value=2.3e-18 Score=186.68 Aligned_cols=172 Identities=19% Similarity=0.232 Sum_probs=135.5
Q ss_pred hhhhhcchhHhhhccCCCCCCCCCCC---------------------CCCchhhHHHHHHHHHHhccCCCc---ccccc-
Q 013798 90 DADLEDRTIEFLSRCQDPNGGYGGGP---------------------GQMPHLATTYAAVNALISLGGEKS---LPSIN- 144 (436)
Q Consensus 90 ~~~~~~~~i~~l~~~q~~dGGF~~~~---------------------~~~sh~~~Ty~Al~~L~~Lg~~~~---l~~id- 144 (436)
+++...++++||+++||+||||+... ...+++..|-.+|.+|..++.... -..++
T Consensus 398 ~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ 477 (634)
T TIGR03463 398 PQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITR 477 (634)
T ss_pred cHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHH
Confidence 44567889999999999999999432 136789999999999998874311 01111
Q ss_pred -chhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhh-ccHHHhhhccCeeeeeceeccccCCC---------
Q 013798 145 -RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGE--------- 213 (436)
Q Consensus 145 -~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~-~~~~~~~~~~~yIlscQ~~dGGFg~~--------- 213 (436)
.+++++||++.|++||||.+.++ ...+..|++++.++...|. .....++++++||+++|++||||+..
T Consensus 478 ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y 556 (634)
T TIGR03463 478 AISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARY 556 (634)
T ss_pred HHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccc
Confidence 35799999999999999987653 4445556666666665664 34577899999999999999999863
Q ss_pred -CCCccccCcchhhHHHHHhhhccccCCcccccceeeeeccccccccccc
Q 013798 214 -PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT 262 (436)
Q Consensus 214 -pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~ 262 (436)
++.+|+...|++||.+|...|..+...+++.++||+++|.++|||....
T Consensus 557 ~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 557 VEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred cCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 4567999999999999999997766678999999999999999997654
No 26
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.72 E-value=7.8e-18 Score=169.95 Aligned_cols=232 Identities=20% Similarity=0.215 Sum_probs=161.1
Q ss_pred cchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhc--------------CCCC
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMK--------------DPSG 160 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q--------------~~dG 160 (436)
++.++||.+.|++||||+..+ +++..|..++.+|...|..... .-..+++++||.+.| .++|
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~-~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G 77 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEF-DPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG 77 (348)
T ss_pred chHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence 578999999999999999765 8999999999999888752111 122468999999999 6899
Q ss_pred ccccccC--cccchh-hhhhHHHHHHHHhh-------ccHHHhhhccCeeeeeceeccccCCC-CC--------------
Q 013798 161 AFRMHDA--GEIDVR-ACYTAISVASILNI-------LDDELLQNVGNYILSCQTYEGGIAGE-PG-------------- 215 (436)
Q Consensus 161 gF~~~~~--ge~D~r-~tY~a~~~~~LL~~-------~~~~~~~~~~~yIlscQ~~dGGFg~~-pg-------------- 215 (436)
||..... +..|.- ..|...+.+ .++. .....++++++||+++|+.||||... +.
T Consensus 78 gw~y~~~~~~~~~~~~Ta~~l~al~-~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~ 156 (348)
T cd02889 78 GWAFSTANQGYPDSDDTAEALKALL-RLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDG 156 (348)
T ss_pred cCcccCcCCCCCCCCChHHHHHHHH-HhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhc
Confidence 9986432 222221 133333332 2232 23467899999999999999999843 21
Q ss_pred ----CccccCcchhhHHHHHhhhccccC-------CcccccceeeeecccccccccccccccccchhccchhHHHHHHHH
Q 013798 216 ----SEAHGGYTFCGLAAMILINEADRL-------DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF 284 (436)
Q Consensus 216 ----~esh~~~TycAlaaL~llg~~~~~-------~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~ 284 (436)
..+++..|..+|.+|..++..... .+++.++||.+.|.++|||.++.+ .+++|+...++..|...
T Consensus 157 ~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~----~~~~y~ta~a~~aL~~~ 232 (348)
T cd02889 157 DIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG----VCFIYGTWFALEALAAA 232 (348)
T ss_pred CCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC----CcchHHHHHHHHHHHHc
Confidence 236777899999999998875332 357899999999999999976532 23444443333323221
Q ss_pred HhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCcc
Q 013798 285 HSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGL 364 (436)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf 364 (436)
.... ..-..+++.+||+++ |.++|||
T Consensus 233 ---g~~~--------------------------------------------------~~~~~~~~~~~L~~~-Q~~dG~w 258 (348)
T cd02889 233 ---GEDE--------------------------------------------------NSPYVRKACDWLLSK-QNPDGGW 258 (348)
T ss_pred ---CCCc--------------------------------------------------CcHHHHHHHHHHHHc-cCCCCCc
Confidence 1100 012346788999987 9999999
Q ss_pred CCC----------CCCCCCcceeeeeccCCchhhc
Q 013798 365 RDK----------LRKPRDYYHTCYCLSGLSICQH 389 (436)
Q Consensus 365 ~~~----------P~k~~D~~hT~~~la~Lsl~~~ 389 (436)
... |+..+|+..|.|+|.+|...+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~ 293 (348)
T cd02889 259 GESYESYEDPSYAGGGRSTVVQTAWALLALMAAGE 293 (348)
T ss_pred CCcccccccccccCCCCCcHHHHHHHHHHHHhcCC
Confidence 753 3557899999999999987653
No 27
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.69 E-value=2.5e-17 Score=179.31 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=138.0
Q ss_pred hhHHHHHHHHhhcc------cchhhhhcchhHhhhccCCCCCCCCCCC---------------------CCCchhhHHHH
Q 013798 74 ICYWILHSMALLGE------FVDADLEDRTIEFLSRCQDPNGGYGGGP---------------------GQMPHLATTYA 126 (436)
Q Consensus 74 ~~yw~l~~L~lL~~------~~~~~~~~~~i~~l~~~q~~dGGF~~~~---------------------~~~sh~~~Ty~ 126 (436)
.+-.++.+|..++. .++.+.++++++||+++|++||||+... .+.+++..|.+
T Consensus 376 ~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~ 455 (634)
T cd02892 376 DTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGS 455 (634)
T ss_pred chHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHH
Confidence 55667777766653 2445678899999999999999998421 12467888999
Q ss_pred HHHHHHhccCCCccc--cc--cchhHHHHHHhhcCCCCccccccCcccchhhhhhHH---HHHHHHhhc--cHHHhhhcc
Q 013798 127 AVNALISLGGEKSLP--SI--NRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI---SVASILNIL--DDELLQNVG 197 (436)
Q Consensus 127 Al~~L~~Lg~~~~l~--~i--d~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~---~~~~LL~~~--~~~~~~~~~ 197 (436)
++.+|..++...... .+ ..+++++||.+.|++||+|.++++ .+++|.++ .++...|.. ....+++++
T Consensus 456 ~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg----~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~ 531 (634)
T cd02892 456 VLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWG----VCYIYGTWFALEALAAAGEDYENSPYIRKAC 531 (634)
T ss_pred HHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCC----CccHHHHHHHHHHHHHhCCcccCcHHHHHHH
Confidence 999999987531110 11 246799999999999999977653 23455443 344444542 346789999
Q ss_pred CeeeeeceeccccCCC----------CCCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccc
Q 013798 198 NYILSCQTYEGGIAGE----------PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 198 ~yIlscQ~~dGGFg~~----------pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
+||++||+.||||+.. ++.++++..|.+||.+|...+..+...++++++||.++|..+|||.-.
T Consensus 532 ~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~ 605 (634)
T cd02892 532 DFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQE 605 (634)
T ss_pred HHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCc
Confidence 9999999999999863 245688889999999999888766667889999999999999999653
No 28
>PLN03012 Camelliol C synthase
Probab=99.68 E-value=1.5e-17 Score=180.68 Aligned_cols=169 Identities=20% Similarity=0.185 Sum_probs=131.7
Q ss_pred cchhhhhcchhHhhhccCCCCCCCCCCCC---------------------CCchhhHHHHHHHHHHhccCCCc---cccc
Q 013798 88 FVDADLEDRTIEFLSRCQDPNGGYGGGPG---------------------QMPHLATTYAAVNALISLGGEKS---LPSI 143 (436)
Q Consensus 88 ~~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~sh~~~Ty~Al~~L~~Lg~~~~---l~~i 143 (436)
.+.++...++|+||++.||+||||+.... +++....|-.+|.+|.+++.... -+.+
T Consensus 509 ~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i 588 (759)
T PLN03012 509 KMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEI 588 (759)
T ss_pred cccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhh
Confidence 35556788999999999999999865322 35777789999999998875211 1112
Q ss_pred c--chhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHH---hh--ccHHHhhhccCeeeeeceeccccCCCC--
Q 013798 144 N--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---NI--LDDELLQNVGNYILSCQTYEGGIAGEP-- 214 (436)
Q Consensus 144 d--~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL---~~--~~~~~~~~~~~yIlscQ~~dGGFg~~p-- 214 (436)
+ .+++++||++.|++||||.++++ ++++|+++.++.-| |. .+...++++++||++.|++|||||..-
T Consensus 589 ~~~i~rAv~~L~~~Q~~DGsW~G~Wg----v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~S 664 (759)
T PLN03012 589 NAFIKKAAEYIENIQMLDGSWYGNWG----ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLS 664 (759)
T ss_pred HHHHHHHHHHHHHhcCCCCCCccccc----ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCC
Confidence 2 35799999999999999998875 57778776655433 32 223678999999999999999999753
Q ss_pred ----------CCccccCcchhhHHHHHhhhcccc--CCcccccceeeeeccccccccc
Q 013798 215 ----------GSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQG 260 (436)
Q Consensus 215 ----------g~esh~~~TycAlaaL~llg~~~~--~~~~~l~~wL~~rQ~~~GGF~g 260 (436)
+..|++..|.+||.+|...|..+. ..+++.++||.++|.++|+|.-
T Consensus 665 c~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q 722 (759)
T PLN03012 665 CPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQ 722 (759)
T ss_pred CCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCC
Confidence 346999999999999999997543 3578999999999999999753
No 29
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.67 E-value=5.9e-17 Score=175.58 Aligned_cols=185 Identities=19% Similarity=0.209 Sum_probs=140.7
Q ss_pred CcchhHHHHHHHHhhccc---chhhhhcchhHhhhccCCCCCCCCCCCC-------------------CCchhhHHHHHH
Q 013798 71 RPWICYWILHSMALLGEF---VDADLEDRTIEFLSRCQDPNGGYGGGPG-------------------QMPHLATTYAAV 128 (436)
Q Consensus 71 r~~~~yw~l~~L~lL~~~---~~~~~~~~~i~~l~~~q~~dGGF~~~~~-------------------~~sh~~~Ty~Al 128 (436)
+.+-+-.++.+|..++.+ ..+...+++++||+++|++||||+.... +.|....|-.++
T Consensus 379 d~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l 458 (635)
T TIGR01507 379 DVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVL 458 (635)
T ss_pred CchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHH
Confidence 455566677777776421 2235788999999999999999975321 246778899999
Q ss_pred HHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHh---h-ccHHHhhhccCeeeeec
Q 013798 129 NALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN---I-LDDELLQNVGNYILSCQ 204 (436)
Q Consensus 129 ~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~---~-~~~~~~~~~~~yIlscQ 204 (436)
.+|..++.... ....+++++||.+.|++||||.++++ ++++|.++.++..|. . .....++++++||+++|
T Consensus 459 ~al~~~g~~~~--~~~i~rav~~L~~~Q~~dG~W~g~wg----~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q 532 (635)
T TIGR01507 459 ECLGSFGYDDA--WPVIERAVEYLKREQEPDGSWFGRWG----VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQ 532 (635)
T ss_pred HHHHHhCCCch--hHHHHHHHHHHHHccCCCCCCccCCC----CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhc
Confidence 99998875321 22236799999999999999977653 355677665544442 2 22467899999999999
Q ss_pred eeccccCCC----------CCCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccc
Q 013798 205 TYEGGIAGE----------PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 205 ~~dGGFg~~----------pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
+.||||+.. ..+++++..|.+||.+|...+..+...++++++||.++|.++|||.-.
T Consensus 533 ~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~dG~W~e~ 599 (635)
T TIGR01507 533 NPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQRPDGGWDEP 599 (635)
T ss_pred CCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCCCCCCCc
Confidence 999999954 234789999999999999998776667899999999999999998643
No 30
>PLN02993 lupeol synthase
Probab=99.67 E-value=5.2e-17 Score=176.76 Aligned_cols=178 Identities=17% Similarity=0.221 Sum_probs=133.3
Q ss_pred chhhhhcchhHhhhccCCCCCCCCCCCC---------------------CCchhhHHHHHHHHHHhccCCC-c--ccccc
Q 013798 89 VDADLEDRTIEFLSRCQDPNGGYGGGPG---------------------QMPHLATTYAAVNALISLGGEK-S--LPSIN 144 (436)
Q Consensus 89 ~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~sh~~~Ty~Al~~L~~Lg~~~-~--l~~id 144 (436)
+.++...++++||+++||.||||+.... +++.+..|-.+|.+|.+++... . .+.++
T Consensus 510 ~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~ 589 (763)
T PLN02993 510 IDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEII 589 (763)
T ss_pred chHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHH
Confidence 4556778899999999999999987431 2578889999999999987411 1 12222
Q ss_pred --chhHHHHHHhhcCCCCccccccCcccchhhhhhHHH---HHHHHhhc--cHHHhhhccCeeeeeceeccccCCCC---
Q 013798 145 --RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAIS---VASILNIL--DDELLQNVGNYILSCQTYEGGIAGEP--- 214 (436)
Q Consensus 145 --~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~---~~~LL~~~--~~~~~~~~~~yIlscQ~~dGGFg~~p--- 214 (436)
.+++++||.+.|++||||.++++ ++++|+++. ++...|.. +...++++++||+++|+.|||||...
T Consensus 590 ~~i~rAv~yL~~~Q~~DGSW~G~Wg----v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~ 665 (763)
T PLN02993 590 KSIEKAVQFIESKQTPDGSWYGNWG----ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSC 665 (763)
T ss_pred HHHHHHHHHHHHhcCCCCCcccccc----cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcC
Confidence 36799999999999999998753 344555544 44334443 23678999999999999999999742
Q ss_pred ---------CCccccCcchhhHHHHHhhhcccc--CCcccccceeeeecccccccccc--cccccccch
Q 013798 215 ---------GSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQGR--TNKLVDGCY 270 (436)
Q Consensus 215 ---------g~esh~~~TycAlaaL~llg~~~~--~~~~~l~~wL~~rQ~~~GGF~gr--~~k~~D~cY 270 (436)
+..|++..|.+|+.+|...|..+. ..+++.++||.++|..+|+|.-. ++-..-+||
T Consensus 666 ~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~ 734 (763)
T PLN02993 666 PEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCM 734 (763)
T ss_pred CCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccce
Confidence 346999999999999999987543 24789999999999999987532 223455666
No 31
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.64 E-value=4e-16 Score=169.27 Aligned_cols=253 Identities=19% Similarity=0.183 Sum_probs=166.4
Q ss_pred hHHHHHHHHhhcccchhhhhcchhHhhhccC--CCCCCCCCCCCCCchhhHHHHHHHHHHhccC-CCccccccchhHHHH
Q 013798 75 CYWILHSMALLGEFVDADLEDRTIEFLSRCQ--DPNGGYGGGPGQMPHLATTYAAVNALISLGG-EKSLPSINRSKVYTF 151 (436)
Q Consensus 75 ~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q--~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~-~~~l~~id~~~~~~~ 151 (436)
+..+++.|.+++.+.+....++++++|.+.. .++||.-..+ ..+..+.|-.++.+|...|. +.... ...+++.+|
T Consensus 259 ~~~~~~~l~~~g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q~-~~s~~WDTala~~AL~e~g~~~~~~~-~~l~kA~~w 336 (634)
T TIGR03463 259 VNGVLNMLAWFAVNPDGPEVAAHLEGLEDYRYEDDDRGLRYNG-YNSSEWDTAFAVQALAATPETAGRHR-RMLERAARF 336 (634)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhEEEcCCCCEEEee-CCCCchhHHHHHHHHHHcCCCchhhh-HHHHHHHHH
Confidence 4556777778887666567889999998776 5565542222 23455999999999977663 11111 123679999
Q ss_pred HHhhcC--------------CCCcccccc--Cc--ccchhhhhhHHHHHHHHh---h-----ccHHHhhhccCeeeeece
Q 013798 152 LKCMKD--------------PSGAFRMHD--AG--EIDVRACYTAISVASILN---I-----LDDELLQNVGNYILSCQT 205 (436)
Q Consensus 152 L~~~Q~--------------~dGgF~~~~--~g--e~D~r~tY~a~~~~~LL~---~-----~~~~~~~~~~~yIlscQ~ 205 (436)
|++.|. +.|||.... .+ .+|. |=-++.++.++. . .....++++++||++|||
T Consensus 337 L~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~--Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn 414 (634)
T TIGR03463 337 LEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDC--TAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQN 414 (634)
T ss_pred HHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCcccc--HHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcC
Confidence 999994 468887643 22 2332 211222221111 1 123567899999999999
Q ss_pred eccccCCCC---------------------CCccccCcchhhHHHHHhhhccccC--------Ccccccceeeeeccccc
Q 013798 206 YEGGIAGEP---------------------GSEAHGGYTFCGLAAMILINEADRL--------DLDALIGWVVFRQGVEG 256 (436)
Q Consensus 206 ~dGGFg~~p---------------------g~esh~~~TycAlaaL~llg~~~~~--------~~~~l~~wL~~rQ~~~G 256 (436)
.||||+... ...+++.-|..+|.+|..+++..+. .++++++||.+.|.+||
T Consensus 415 ~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dG 494 (634)
T TIGR03463 415 EDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDG 494 (634)
T ss_pred CCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCC
Confidence 999999321 1246778889999999988764331 26789999999999999
Q ss_pred ccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccc
Q 013798 257 GFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQ 336 (436)
Q Consensus 257 GF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (436)
||.|+-+ .||+| ++...+..+...+...
T Consensus 495 sW~g~Wg----~~~~Y---~T~~al~aL~~~G~~~--------------------------------------------- 522 (634)
T TIGR03463 495 SFPGSWG----VCFTY---GTFHGVMGLRAAGASP--------------------------------------------- 522 (634)
T ss_pred CccccCC----CCCcH---HHHHHHHHHHHcCCCc---------------------------------------------
Confidence 9988643 46655 3343344433211100
Q ss_pred cccccchhhHHHHHHhhhhhccCCCCccCCC----------CCCCCCcceeeeeccCCchhhc
Q 013798 337 HREREPLFHSIALQRYLLLCSQDPRGGLRDK----------LRKPRDYYHTCYCLSGLSICQH 389 (436)
Q Consensus 337 ~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~----------P~k~~D~~hT~~~la~Lsl~~~ 389 (436)
.--..++..+||+++ |+++|||... ++..+.++.|.|+|.+|..++.
T Consensus 523 -----~~~~i~rA~~~Ll~~-Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~ 579 (634)
T TIGR03463 523 -----DDMALQRAAAWLRSY-QRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGE 579 (634)
T ss_pred -----CcHHHHHHHHHHHHc-cCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCC
Confidence 001236788999987 9999999763 4456899999999999988753
No 32
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.63 E-value=5.1e-16 Score=169.10 Aligned_cols=213 Identities=17% Similarity=0.192 Sum_probs=144.3
Q ss_pred hhhHHHHHHhhhhcCCcc--ceecCCCcchhHHHHHHHHhhccc-chhhhhcchhHhhhccCC--------------CCC
Q 013798 47 KNHVEYLLRGLQQLGPSF--CSLDANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQD--------------PNG 109 (436)
Q Consensus 47 ~~h~~yl~~~l~~lp~~~--~~~d~~r~~~~yw~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~--------------~dG 109 (436)
.+|++++.+.+-.-++.. .....+.+|-+=+++.+|.-.|.. -.....+++++||.++|. +.|
T Consensus 281 ~~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~G 360 (634)
T cd02892 281 KRHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKG 360 (634)
T ss_pred HHHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCC
Confidence 457777777553222222 223456788888888888666642 123356789999999985 357
Q ss_pred CCCCC--CCCCchhhHHHHHHHHHHhccCCCc----cccccchhHHHHHHhhcCCCCccccc-cC--c------------
Q 013798 110 GYGGG--PGQMPHLATTYAAVNALISLGGEKS----LPSINRSKVYTFLKCMKDPSGAFRMH-DA--G------------ 168 (436)
Q Consensus 110 GF~~~--~~~~sh~~~Ty~Al~~L~~Lg~~~~----l~~id~~~~~~~L~~~Q~~dGgF~~~-~~--g------------ 168 (436)
||+.. +...|....|..++.+|..++.... ...-..+++++||.++|++||||... +. +
T Consensus 361 GW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~ 440 (634)
T cd02892 361 GWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDF 440 (634)
T ss_pred CCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhh
Confidence 77654 2345778899999999988874310 11112357899999999999999742 11 0
Q ss_pred ------ccchhhhhhHHHHHHHHhhccH-------HHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhc
Q 013798 169 ------EIDVRACYTAISVASILNILDD-------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 235 (436)
Q Consensus 169 ------e~D~r~tY~a~~~~~LL~~~~~-------~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~ 235 (436)
...+-.|..++.++.+++.... ..++++++||+++|+.||||.+.-+ ..+...|+.++.+|..+|.
T Consensus 441 g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~ 519 (634)
T cd02892 441 GDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGE 519 (634)
T ss_pred cccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCC
Confidence 0111125555555555543322 3588999999999999999965433 4556678889999999886
Q ss_pred c--ccCCcccccceeeeeccccccccc
Q 013798 236 A--DRLDLDALIGWVVFRQGVEGGFQG 260 (436)
Q Consensus 236 ~--~~~~~~~l~~wL~~rQ~~~GGF~g 260 (436)
. ....++++++||.++|..||||..
T Consensus 520 ~~~~~~~i~~a~~~L~s~Q~~DGgWge 546 (634)
T cd02892 520 DYENSPYIRKACDFLLSKQNPDGGWGE 546 (634)
T ss_pred cccCcHHHHHHHHHHHhcCCCCCCCCC
Confidence 4 234578999999999999999974
No 33
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.63 E-value=7.7e-17 Score=136.37 Aligned_cols=108 Identities=23% Similarity=0.354 Sum_probs=87.6
Q ss_pred HHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhc--cCeeeeeceeccccCCCC-CCccccCcchh
Q 013798 149 YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNV--GNYILSCQTYEGGIAGEP-GSEAHGGYTFC 225 (436)
Q Consensus 149 ~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~--~~yIlscQ~~dGGFg~~p-g~esh~~~Tyc 225 (436)
|+||+++|++||||... +..+++..|+.++.++..++... +++++ ++||+++|++||||+..| +.+++..+|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999987 66778877887777777666543 47777 999999999999999999 56789999999
Q ss_pred hHHHHHhhhcccc-CCcccccceeeeecccccccc
Q 013798 226 GLAAMILINEADR-LDLDALIGWVVFRQGVEGGFQ 259 (436)
Q Consensus 226 AlaaL~llg~~~~-~~~~~l~~wL~~rQ~~~GGF~ 259 (436)
++++|.+++.... ..++++++||+++|+++|||+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999998764 678999999999999999996
No 34
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.62 E-value=2.4e-15 Score=163.13 Aligned_cols=214 Identities=18% Similarity=0.115 Sum_probs=141.3
Q ss_pred hhhhHHHHHHhhhhcCCccce-ecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCC-------------CCCCC
Q 013798 46 RKNHVEYLLRGLQQLGPSFCS-LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQD-------------PNGGY 111 (436)
Q Consensus 46 r~~h~~yl~~~l~~lp~~~~~-~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~-------------~dGGF 111 (436)
+.+|++++.+.+...+++... ...+..|-+-+++.+|...|..-++...+++.+||+++|- +.||+
T Consensus 289 ~~~~l~~l~~~~~~~~~g~~~~~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW 368 (635)
T TIGR01507 289 IKLGWEGIDLYGVELDDSWMFQACVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGW 368 (635)
T ss_pred HHHHHHHHHHheEecCCceEecCCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCcc
Confidence 445888887765443444322 1246889899999999877753333457899999999872 35777
Q ss_pred CCC--CCCCchhhHHHHHHHHHHhccCCC-ccccccchhHHHHHHhhcCCCCcccccc--C----------cc----cch
Q 013798 112 GGG--PGQMPHLATTYAAVNALISLGGEK-SLPSINRSKVYTFLKCMKDPSGAFRMHD--A----------GE----IDV 172 (436)
Q Consensus 112 ~~~--~~~~sh~~~Ty~Al~~L~~Lg~~~-~l~~id~~~~~~~L~~~Q~~dGgF~~~~--~----------ge----~D~ 172 (436)
+.. +...|.+..|-.++.+|..++..+ ....-..+++++||.++|++||||..-. + +. .|-
T Consensus 369 ~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~ 448 (635)
T TIGR01507 369 AFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDP 448 (635)
T ss_pred CCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCC
Confidence 765 344689999999999998875211 1111234679999999999999996421 0 00 011
Q ss_pred hhhh-hHHHHHHH--Hhh-ccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccc-cCCcccccce
Q 013798 173 RACY-TAISVASI--LNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIGW 247 (436)
Q Consensus 173 r~tY-~a~~~~~L--L~~-~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~-~~~~~~l~~w 247 (436)
-..= ++.++.+| .+. .....++++++||++.|++||||-+.-+ ..+...|..+|.+|+..|... ...++++++|
T Consensus 449 ~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~w 527 (635)
T TIGR01507 449 PTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALAW 527 (635)
T ss_pred CCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 0001 12222222 221 2245689999999999999999733222 345566777888888776532 2347899999
Q ss_pred eeeeccccccccc
Q 013798 248 VVFRQGVEGGFQG 260 (436)
Q Consensus 248 L~~rQ~~~GGF~g 260 (436)
|.++|.+||||..
T Consensus 528 L~~~Q~~DGGWge 540 (635)
T TIGR01507 528 LESHQNPDGGWGE 540 (635)
T ss_pred HHHhcCCCCCCCC
Confidence 9999999999974
No 35
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.59 E-value=1.2e-15 Score=165.28 Aligned_cols=168 Identities=18% Similarity=0.208 Sum_probs=126.7
Q ss_pred chhhhhcchhHhhhccCCCCCCCCCCC---------------------CCCchhhHHHHHHHHHHhccCCC-ccccccch
Q 013798 89 VDADLEDRTIEFLSRCQDPNGGYGGGP---------------------GQMPHLATTYAAVNALISLGGEK-SLPSINRS 146 (436)
Q Consensus 89 ~~~~~~~~~i~~l~~~q~~dGGF~~~~---------------------~~~sh~~~Ty~Al~~L~~Lg~~~-~l~~id~~ 146 (436)
++.+..+++++||.++|++||||+... -+.|....|..+|.+|..++... .+. -..+
T Consensus 385 ~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~-~~i~ 463 (621)
T TIGR01787 385 VKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIR-NVLE 463 (621)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHH-HHHH
Confidence 445667889999999999999998521 12345568999999998886311 111 1246
Q ss_pred hHHHHHHhhcCCCCccccccCcccchhhhhhHHHHH---HHHhhcc--HHHhhhccCeeeeeceeccccCCCC-------
Q 013798 147 KVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVA---SILNILD--DELLQNVGNYILSCQTYEGGIAGEP------- 214 (436)
Q Consensus 147 ~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~---~LL~~~~--~~~~~~~~~yIlscQ~~dGGFg~~p------- 214 (436)
++++||.+.|++||+|.+.++ .+++|..+.++ ..+|... ...++++++||+++|+.||||+...
T Consensus 464 rAl~~L~~~Q~~DGsw~g~wg----~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~ 539 (621)
T TIGR01787 464 RALEYLRREQRADGSWFGRWG----VNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPS 539 (621)
T ss_pred HHHHHHHHhcCCCCCCcccCC----CCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccc
Confidence 899999999999999987653 23456554433 3344321 2668999999999999999999642
Q ss_pred ---CCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccc
Q 013798 215 ---GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 215 ---g~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
..+|++..|.+||.+|...+..+...++++++||.++|.++|||...
T Consensus 540 y~~~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~ 589 (621)
T TIGR01787 540 YVGSGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQE 589 (621)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCc
Confidence 24689999999999999888765556899999999999999999754
No 36
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.58 E-value=4.9e-15 Score=160.56 Aligned_cols=232 Identities=16% Similarity=0.131 Sum_probs=144.6
Q ss_pred hhhHHHHHHhhhhcCCc-cceecCCCcchhHHHHHHHHhhcc---cchhhhhcchhHhhhccCCCC--------------
Q 013798 47 KNHVEYLLRGLQQLGPS-FCSLDANRPWICYWILHSMALLGE---FVDADLEDRTIEFLSRCQDPN-------------- 108 (436)
Q Consensus 47 ~~h~~yl~~~l~~lp~~-~~~~d~~r~~~~yw~l~~L~lL~~---~~~~~~~~~~i~~l~~~q~~d-------------- 108 (436)
.+|++.|.+.+-..++. +...-.+..|-+=+++.+|.--|. +-.....+++++||.++|..+
T Consensus 270 ~~~l~~l~~~~~~~~dg~~~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~ 349 (621)
T TIGR01787 270 QKHLQRIDDYLWLQLDGMKMQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLK 349 (621)
T ss_pred HHHHHHHhhcEEEeCCccEEecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCC
Confidence 45666666644322332 222235678888888888865552 211235788999999999766
Q ss_pred -CCCCCC--CCCCchhhHHHHHHHHHHhccCC-CccccccchhHHHHHHhhcCCCCcccccc-C-c--------------
Q 013798 109 -GGYGGG--PGQMPHLATTYAAVNALISLGGE-KSLPSINRSKVYTFLKCMKDPSGAFRMHD-A-G-------------- 168 (436)
Q Consensus 109 -GGF~~~--~~~~sh~~~Ty~Al~~L~~Lg~~-~~l~~id~~~~~~~L~~~Q~~dGgF~~~~-~-g-------------- 168 (436)
|||+.. ....|.+..|-.++.++.++... +....-..+++++||.++|++||||.... . +
T Consensus 350 pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~ 429 (621)
T TIGR01787 350 PGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFG 429 (621)
T ss_pred CCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhc
Confidence 666543 22356777777777666555421 11111223579999999999999997421 1 1
Q ss_pred cc--chhh---hhhHHHHHHHHhh---ccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhcccc--
Q 013798 169 EI--DVRA---CYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR-- 238 (436)
Q Consensus 169 e~--D~r~---tY~a~~~~~LL~~---~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~-- 238 (436)
+. |-.. |-.++.++...+. .....++++++||+++|++||+|.+.-+. .....|.+++.+|..+|....
T Consensus 430 d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~~~ 508 (621)
T TIGR01787 430 DIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYRNC 508 (621)
T ss_pred cccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcccCC
Confidence 01 1111 2222222222221 11356899999999999999998654332 334557888889998886532
Q ss_pred CCcccccceeeeecccccccccccc----------cccccchhccchhHHH
Q 013798 239 LDLDALIGWVVFRQGVEGGFQGRTN----------KLVDGCYSFWQGGVFA 279 (436)
Q Consensus 239 ~~~~~l~~wL~~rQ~~~GGF~gr~~----------k~~D~cYsfw~~~~l~ 279 (436)
..++++++||.++|..||||..... ...|+-.+.|++.+|.
T Consensus 509 ~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~ 559 (621)
T TIGR01787 509 PEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI 559 (621)
T ss_pred HHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999975432 2356666666666553
No 37
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.49 E-value=4.1e-15 Score=136.85 Aligned_cols=221 Identities=18% Similarity=0.165 Sum_probs=156.6
Q ss_pred hhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhh-cCCCCccccc----
Q 013798 91 ADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCM-KDPSGAFRMH---- 165 (436)
Q Consensus 91 ~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~-Q~~dGgF~~~---- 165 (436)
..+++++++||...|+.||||+...+....+..||+||.++.+||. +...++++++||.+. |..-+++...
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~----evPr~EktiefL~d~~qt~~~~~a~~~~~l 80 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGH----EVPRKEKTIEFLYDQMQTAGVGVAMAIEFL 80 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCC----cCchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3567899999999999999999887777778999999999999996 355678999999983 5544444320
Q ss_pred ------------------------------cC------cccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccc
Q 013798 166 ------------------------------DA------GEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGG 209 (436)
Q Consensus 166 ------------------------------~~------ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGG 209 (436)
.+ ...-++.+|++..++.+.|.. ..+.+.+||++-|+.+|+
T Consensus 81 ~~lg~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~ 157 (274)
T COG1689 81 RILGAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGI 157 (274)
T ss_pred HHhcccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhcc
Confidence 01 122467899999888887742 224445666667788877
Q ss_pred cCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccccccc----cccchhccchhHHHHHHHHH
Q 013798 210 IAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKL----VDGCYSFWQGGVFALLRRFH 285 (436)
Q Consensus 210 Fg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~----~D~cYsfw~~~~l~lL~~~~ 285 (436)
+.+---..+....||.|+-.|...+. .+.+..|=..| ...|||+--|+.. .|+ |.+...+.||+.-.
T Consensus 158 g~~YGv~~pnt~~t~~aly~l~~k~~-----~~~v~~Fe~~c-~~~Ggf~~~P~syPPYiE~t---~ya~r~lelL~~k~ 228 (274)
T COG1689 158 GDAYGVTHPNTTMTYQALYTLGSKGP-----KEEVRHFELCC-GDWGGFTEVPNSYPPYIEPT---FYALRGLELLGGKY 228 (274)
T ss_pred ccccccCCcchHHHHHHHHhhccccc-----hHHHHhHHhcc-ccCCCcccCCCCCCCccchH---HHHHhHHHHHccCc
Confidence 66544444555677777666655543 23344444332 2469999998874 366 66777777776521
Q ss_pred hhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCccC
Q 013798 286 SIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLR 365 (436)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~ 365 (436)
++ .+..+||.+- ||++||||
T Consensus 229 ----------------------------------------------------------~i-~~~~rFI~sl-qN~nGGFR 248 (274)
T COG1689 229 ----------------------------------------------------------CI-SDHIRFIRSL-QNQNGGFR 248 (274)
T ss_pred ----------------------------------------------------------Cc-hHHHHHHHHh-hcCCCCee
Confidence 11 4577899997 99999999
Q ss_pred CCC-CCCCCcceeeeeccCCchh
Q 013798 366 DKL-RKPRDYYHTCYCLSGLSIC 387 (436)
Q Consensus 366 ~~P-~k~~D~~hT~~~la~Lsl~ 387 (436)
..- ...+.+-.|+++++.|..+
T Consensus 249 RS~~~GISt~e~tYrAl~~L~~l 271 (274)
T COG1689 249 RSYELGISTFENTYRALASLASL 271 (274)
T ss_pred eeEeccccchHHHHHHHHHHHHH
Confidence 865 5668899999999888765
No 38
>PLN02993 lupeol synthase
Probab=99.36 E-value=3.4e-12 Score=139.43 Aligned_cols=192 Identities=13% Similarity=0.142 Sum_probs=134.8
Q ss_pred CCCcchhHHHHHHHHhhccc-chhhhhcchhHhhhccCCC---------------CCCCCCC--CCCCchhhHHHHHHHH
Q 013798 69 ANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQDP---------------NGGYGGG--PGQMPHLATTYAAVNA 130 (436)
Q Consensus 69 ~~r~~~~yw~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~~---------------dGGF~~~--~~~~sh~~~Ty~Al~~ 130 (436)
.+..|=+=+++.+|.--|.. -.....+++.+||.+.|-. .|||+.+ ....|....|-.++.+
T Consensus 415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka 494 (763)
T PLN02993 415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC 494 (763)
T ss_pred CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence 67889999999888766631 1233578899999988752 2777654 3457888888888876
Q ss_pred HHhccCCCc-c--cccc---chhHHHHHHhhcCCCCcccccc------------------CcccchhhhhhHHHHHHHHh
Q 013798 131 LISLGGEKS-L--PSIN---RSKVYTFLKCMKDPSGAFRMHD------------------AGEIDVRACYTAISVASILN 186 (436)
Q Consensus 131 L~~Lg~~~~-l--~~id---~~~~~~~L~~~Q~~dGgF~~~~------------------~ge~D~r~tY~a~~~~~LL~ 186 (436)
+.+|..... . ..++ ..++++||+++|++||||..-. +--.|-..++|+..++..|.
T Consensus 495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~ 574 (763)
T PLN02993 495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV 574 (763)
T ss_pred HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence 544432110 0 1222 2468999999999999997521 01124455677666554443
Q ss_pred hc----c-------HHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhcccc--CCcccccceeeeecc
Q 013798 187 IL----D-------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQG 253 (436)
Q Consensus 187 ~~----~-------~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~--~~~~~l~~wL~~rQ~ 253 (436)
.. + ...++++++||++.|++||||.+. -+......|++||.+|..+|.... ..++++++||+++|.
T Consensus 575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~ 653 (763)
T PLN02993 575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR 653 (763)
T ss_pred HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 21 1 245789999999999999999764 334566678899999999887633 458899999999999
Q ss_pred cccccccc
Q 013798 254 VEGGFQGR 261 (436)
Q Consensus 254 ~~GGF~gr 261 (436)
+||||...
T Consensus 654 ~DGGWGEs 661 (763)
T PLN02993 654 DDGGWGES 661 (763)
T ss_pred CCCCcCcC
Confidence 99999764
No 39
>PLN03012 Camelliol C synthase
Probab=99.29 E-value=8.8e-12 Score=136.01 Aligned_cols=254 Identities=18% Similarity=0.186 Sum_probs=155.6
Q ss_pred hHHHHHHHHhhcccchhhhhcchhHhhhcc--CCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHH
Q 013798 75 CYWILHSMALLGEFVDADLEDRTIEFLSRC--QDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFL 152 (436)
Q Consensus 75 ~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~--q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L 152 (436)
+..+++.|..++.+.+....++.++=|.+. ..+||-... +..|.++.|-+++++|..-|-.+... ....++.+||
T Consensus 372 v~~~l~ml~~~~~~p~~~~~k~hl~ri~d~lw~~~dGm~~q--~~gSqvWDTa~~~qAl~~agl~~~~~-~~l~kA~~~L 448 (759)
T PLN03012 372 VEKALCMLACWVEDPNGDHFKKHLLRISDYLWIAEDGMKMQ--SFGSQLWDSGFALQALLASNLSNEIP-DVLRRGHDFI 448 (759)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEc--CCCCcHHHHHHHHHHHHHcCCCccch-HHHHHHHHHH
Confidence 445666666666543333344444333222 124442222 22689999999999998776321111 1235899999
Q ss_pred HhhcCC---------------CCccccc--cCc--ccchhhhhhHHHH---HHHHh------hccHHHhhhccCeeeeec
Q 013798 153 KCMKDP---------------SGAFRMH--DAG--EIDVRACYTAISV---ASILN------ILDDELLQNVGNYILSCQ 204 (436)
Q Consensus 153 ~~~Q~~---------------dGgF~~~--~~g--e~D~r~tY~a~~~---~~LL~------~~~~~~~~~~~~yIlscQ 204 (436)
++.|.. .|||... ..+ .+|- |=-++-+ ++++. ......+.++++||++.|
T Consensus 449 ~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~--TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQ 526 (759)
T PLN03012 449 KNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDC--TAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQ 526 (759)
T ss_pred HHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCc--cHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhcc
Confidence 998873 1555432 222 2332 2112211 22221 112356789999999999
Q ss_pred eeccccCCCCC---------------------CccccCcchhhHHHHHhhhcccc------C--Ccccccceeeeecccc
Q 013798 205 TYEGGIAGEPG---------------------SEAHGGYTFCGLAAMILINEADR------L--DLDALIGWVVFRQGVE 255 (436)
Q Consensus 205 ~~dGGFg~~pg---------------------~esh~~~TycAlaaL~llg~~~~------~--~~~~l~~wL~~rQ~~~ 255 (436)
|.||||+.-.. ..+.+.-|..+|-+|.++++..+ + .+.++++||.+.|.+|
T Consensus 527 n~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~D 606 (759)
T PLN03012 527 SKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLD 606 (759)
T ss_pred CCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCC
Confidence 99999864211 12344457778888988876432 1 2568999999999999
Q ss_pred cccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCcccc
Q 013798 256 GGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHF 335 (436)
Q Consensus 256 GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
|||-|+-. +||+|. +...|..+..... .. ..
T Consensus 607 GsW~G~Wg----v~y~Yg---T~~aL~aL~a~g~-~~--------------------------~~--------------- 637 (759)
T PLN03012 607 GSWYGNWG----ICFTYG---TWFALAGLAAAGK-TF--------------------------ND--------------- 637 (759)
T ss_pred CCCccccc----ccCCcH---HHHHHHHHHHhCc-cC--------------------------CC---------------
Confidence 99999875 699984 3333333322111 00 00
Q ss_pred ccccccchhhHHHHHHhhhhhccCCCCccCCCC------------CCCCCcceeeeeccCCchhhcc
Q 013798 336 QHREREPLFHSIALQRYLLLCSQDPRGGLRDKL------------RKPRDYYHTCYCLSGLSICQHS 390 (436)
Q Consensus 336 ~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P------------~k~~D~~hT~~~la~Lsl~~~~ 390 (436)
.+ -.++..+||++. |+++|||...- +..+-++.|+||+-||..++..
T Consensus 638 -----~~--~Irrav~fLls~-Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~ 696 (759)
T PLN03012 638 -----CE--AIRKGVHFLLAA-QKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQA 696 (759)
T ss_pred -----cH--HHHHHHHHHHHh-cCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 01 125678899986 99999998732 3457889999999999887654
No 40
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.23 E-value=1.9e-11 Score=112.94 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=114.0
Q ss_pred CCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhH
Q 013798 69 ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKV 148 (436)
Q Consensus 69 ~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~ 148 (436)
++-+..+||+..+|.+.+.+.+++.++.+ .+.|+++|++.+.--..|+..+||.|+..|..++. ++.+
T Consensus 120 ~~~Le~ty~~~~~l~~~n~~~~eE~k~~v----~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~--------~~~v 187 (274)
T COG1689 120 ATPLEATYWMMSALNMVNYEYLEEMKEKV----IEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP--------KEEV 187 (274)
T ss_pred CchHHHHHHHHHHHHHhCcCchHHHHHHH----HHHhhhhccccccccCCcchHHHHHHHHhhccccc--------hHHH
Confidence 34467899999999999976776665555 45566677666654567888888888777665542 3455
Q ss_pred HHHHHhhcCCCCccccccCcc-cchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCC-CCCccccCcchhh
Q 013798 149 YTFLKCMKDPSGAFRMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGE-PGSEAHGGYTFCG 226 (436)
Q Consensus 149 ~~~L~~~Q~~dGgF~~~~~ge-~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~-pg~esh~~~TycA 226 (436)
..|-..| -.+|||...|++- +-+..+|.|+.++.||+.. -.+.+.++||++.||.+|||... ..+.|....||.|
T Consensus 188 ~~Fe~~c-~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrA 264 (274)
T COG1689 188 RHFELCC-GDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRA 264 (274)
T ss_pred HhHHhcc-ccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHH
Confidence 5555553 3589999888764 3566799999999999754 34567889999999999999976 4677889999999
Q ss_pred HHHHHhhh
Q 013798 227 LAAMILIN 234 (436)
Q Consensus 227 laaL~llg 234 (436)
|++|+.+-
T Consensus 265 l~~L~~l~ 272 (274)
T COG1689 265 LASLASLH 272 (274)
T ss_pred HHHHHHHh
Confidence 99998764
No 41
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.18 E-value=2.5e-12 Score=91.20 Aligned_cols=44 Identities=39% Similarity=0.805 Sum_probs=41.8
Q ss_pred HHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhh
Q 013798 191 ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 234 (436)
Q Consensus 191 ~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg 234 (436)
++++++++||++||++||||+..|+.++|+.+||||+++|+++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 36789999999999999999999999999999999999999986
No 42
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.15 E-value=7e-11 Score=117.54 Aligned_cols=154 Identities=14% Similarity=0.038 Sum_probs=104.4
Q ss_pred hcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCcccccc-------
Q 013798 94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD------- 166 (436)
Q Consensus 94 ~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~------- 166 (436)
.++.++.++++|++||||+..++..++.+.|.+++.+|.........+.-..++.++||.+.|++||+|....
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 4556677889999999999776678899999999999988764211111123568999999999999998532
Q ss_pred -Cc----ccchhhhhhHHHHHHHHhh--c-------cHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHh
Q 013798 167 -AG----EIDVRACYTAISVASILNI--L-------DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMIL 232 (436)
Q Consensus 167 -~g----e~D~r~tY~a~~~~~LL~~--~-------~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~l 232 (436)
++ +.++ ..+|.++..|+.. . ....++++++||.+++.. ..++..+.-+..+|++
T Consensus 134 ~gg~~~~~~~~--~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal 201 (297)
T cd02896 134 TGGVEGSEGDV--SLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALAL 201 (297)
T ss_pred cCCccccCCCc--cchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHH
Confidence 11 1222 3445555555432 1 124678999999997753 1233334444455666
Q ss_pred hhccccCCcccccceeeeeccccccccccc
Q 013798 233 INEADRLDLDALIGWVVFRQGVEGGFQGRT 262 (436)
Q Consensus 233 lg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~ 262 (436)
.|.. ...++.+||.++|..+||+..+.
T Consensus 202 ~~~~---~~~~a~~~L~~~~~~d~~~~~~~ 228 (297)
T cd02896 202 ADSP---LSHAANRKLLSLAKRDGNGWYWW 228 (297)
T ss_pred cCCh---hhHHHHHHHHHHhhhCCCcceec
Confidence 6643 56789999999999999876543
No 43
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.12 E-value=9.5e-11 Score=116.59 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=131.5
Q ss_pred hcCCccce--ecCCCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhccCCCCCCCCCCC------------CCCchhh
Q 013798 59 QLGPSFCS--LDANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGGP------------GQMPHLA 122 (436)
Q Consensus 59 ~lp~~~~~--~d~~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~~~------------~~~sh~~ 122 (436)
..+++|.. .....+|++-+++.+|..... .+++...++.++||.+.|++||+|.... +.++.+.
T Consensus 66 ~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~ 145 (297)
T cd02896 66 KPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVS 145 (297)
T ss_pred CCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCcc
Confidence 34677743 345678999999999887764 3667788999999999999999998631 1136777
Q ss_pred HHHHHHHHHHhccCCCcc----ccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccC
Q 013798 123 TTYAAVNALISLGGEKSL----PSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 198 (436)
Q Consensus 123 ~Ty~Al~~L~~Lg~~~~l----~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~ 198 (436)
.|-+++.+|...+..... .....+++++||.+.+.+ +...|..+.+++.|........+++.+
T Consensus 146 lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~-------------~~~~Y~~Al~ayALal~~~~~~~~a~~ 212 (297)
T cd02896 146 LTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN-------------LQRPYALAITAYALALADSPLSHAANR 212 (297)
T ss_pred chHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc-------------CCChHHHHHHHHHHHHcCChhhHHHHH
Confidence 888888888776642100 011236789999987653 223565544444343333346778899
Q ss_pred eeeeeceeccccCCC---------C--CCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccc
Q 013798 199 YILSCQTYEGGIAGE---------P--GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 199 yIlscQ~~dGGFg~~---------p--g~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
+|++.|+.|||++.. + +....+-.|.+||.++...+. .....+.++||.+.|...|||..-
T Consensus 213 ~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~--~~~a~~iv~WL~~qr~~~Ggf~sT 284 (297)
T cd02896 213 KLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGD--IEYANPIARWLTEQRNYGGGFGST 284 (297)
T ss_pred HHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCC--chhHHHHHHHHHhcCCCCCCeehH
Confidence 999999999998742 1 112356788888888777764 335778999999999999999854
No 44
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.11 E-value=1.7e-10 Score=114.39 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=93.1
Q ss_pred chhhhhcchhHhhh-------ccCCCCCCCCCCCC--CCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCC
Q 013798 89 VDADLEDRTIEFLS-------RCQDPNGGYGGGPG--QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPS 159 (436)
Q Consensus 89 ~~~~~~~~~i~~l~-------~~q~~dGGF~~~~~--~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~d 159 (436)
++++.++++++||. ++|++||||+.... ..++.+.|.+++.+|.........+.--.++.++||.+.|++|
T Consensus 39 ~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~d 118 (292)
T cd02897 39 LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSN 118 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCC
Confidence 44445556655554 68999999986533 3789999999999998876321122222467999999999999
Q ss_pred CccccccC-------cccchhhhhhHHHHHHHH--hhc-cHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHH
Q 013798 160 GAFRMHDA-------GEIDVRACYTAISVASIL--NIL-DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAA 229 (436)
Q Consensus 160 GgF~~~~~-------ge~D~r~tY~a~~~~~LL--~~~-~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaa 229 (436)
|+|..... +..+-...-.+.++..|+ |.. ....++++++||.+.+.. ..+...+..+..+
T Consensus 119 G~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~A 188 (292)
T cd02897 119 GCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYA 188 (292)
T ss_pred CCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHH
Confidence 99974210 000000112333333333 322 235678999999886653 2345566667777
Q ss_pred HHhhhccccCCcccccceeeeecc
Q 013798 230 MILINEADRLDLDALIGWVVFRQG 253 (436)
Q Consensus 230 L~llg~~~~~~~~~l~~wL~~rQ~ 253 (436)
|++++. ...++++++|.+.+.
T Consensus 189 L~~~~~---~~~~~~~~~l~~~~~ 209 (292)
T cd02897 189 LTLAGS---EKRPEALKKLDELAI 209 (292)
T ss_pred HHHcCC---ccHHHHHHHHHHHHh
Confidence 777772 224566666655443
No 45
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.11 E-value=1e-11 Score=88.14 Aligned_cols=44 Identities=32% Similarity=0.492 Sum_probs=41.1
Q ss_pred hhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchhh
Q 013798 344 FHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQ 388 (436)
Q Consensus 344 ~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~ 388 (436)
+|.+++.+||++| |+++|||.++|++.+|.+||+|++++|+|++
T Consensus 1 id~~~~~~~l~~~-Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSC-QNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHT-BBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH-CCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 4779999999998 8899999999999999999999999999874
No 46
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.08 E-value=6.4e-11 Score=125.12 Aligned_cols=170 Identities=22% Similarity=0.249 Sum_probs=132.6
Q ss_pred cccchhhhhcchhHhhhccCCCCCCCCCCC-------------C--------CCchhhHHHHHHHHHHhccCCC---ccc
Q 013798 86 GEFVDADLEDRTIEFLSRCQDPNGGYGGGP-------------G--------QMPHLATTYAAVNALISLGGEK---SLP 141 (436)
Q Consensus 86 ~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~-------------~--------~~sh~~~Ty~Al~~L~~Lg~~~---~l~ 141 (436)
+..++.+..-++++.|+..|..+|||.... . .+..+-.|-++|++|....... +-.
T Consensus 506 g~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~ 585 (760)
T KOG0497|consen 506 GEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKK 585 (760)
T ss_pred cCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHH
Confidence 444666667788999999999999997631 1 2467788999999998876421 111
Q ss_pred ccc--chhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHH---hh--ccHHHhhhccCeeeeeceeccccCCC-
Q 013798 142 SIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---NI--LDDELLQNVGNYILSCQTYEGGIAGE- 213 (436)
Q Consensus 142 ~id--~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL---~~--~~~~~~~~~~~yIlscQ~~dGGFg~~- 213 (436)
.+. .+++++||.+.|.+||+|.++++ ++++|.++....-| |. .+-..++++++||++-|+.|||+|..
T Consensus 586 Ei~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~ 661 (760)
T KOG0497|consen 586 EIEKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESY 661 (760)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCcccc
Confidence 122 25789999999999999999885 88999888655332 21 12366899999999999999999975
Q ss_pred -----------CCCccccCcchhhHHHHHhhhccccC--Ccccccceeeeecccccccc
Q 013798 214 -----------PGSEAHGGYTFCGLAAMILINEADRL--DLDALIGWVVFRQGVEGGFQ 259 (436)
Q Consensus 214 -----------pg~esh~~~TycAlaaL~llg~~~~~--~~~~l~~wL~~rQ~~~GGF~ 259 (436)
.|..+++..|.+|+.+|.+.|+.+.. ...++++.|.+.|..+|-|.
T Consensus 662 lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfp 720 (760)
T KOG0497|consen 662 LSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFP 720 (760)
T ss_pred ccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcc
Confidence 34568999999999999999987654 68899999999999888764
No 47
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.00 E-value=1e-09 Score=108.74 Aligned_cols=199 Identities=18% Similarity=0.253 Sum_probs=127.9
Q ss_pred hhhhHHHHHHhh------hhcCCcccee----cCCCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhccCCCCCCCCC
Q 013798 46 RKNHVEYLLRGL------QQLGPSFCSL----DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGG 113 (436)
Q Consensus 46 r~~h~~yl~~~l------~~lp~~~~~~----d~~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~ 113 (436)
+++.++||.... +...++|..- +.+.+|++-+++.+|...+. .+++...++.++||.+.|++||||+.
T Consensus 44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 456677777643 4456778543 24578999999999887663 35677889999999999999999985
Q ss_pred CC---------CCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHH--
Q 013798 114 GP---------GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVA-- 182 (436)
Q Consensus 114 ~~---------~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~-- 182 (436)
.. +..+.+..|-+++.+|...|... .....++.++||.+.+.+ +..+|....++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~--~~~~i~~a~~yL~~~~~~-------------~~~~y~~al~a~A 188 (292)
T cd02897 124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS--ERPVVEKALSCLEAALDS-------------ISDPYTLALAAYA 188 (292)
T ss_pred CCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc--ccHHHHHHHHHHHHhccc-------------CCCHHHHHHHHHH
Confidence 21 12355678899999998887531 112236899999987653 12245433322
Q ss_pred -HHHhhccHHHhhhccCee---eeeceeccccCCC-----------CCCccccCcchhhHHHHHhhhccccCCcccccce
Q 013798 183 -SILNILDDELLQNVGNYI---LSCQTYEGGIAGE-----------PGSEAHGGYTFCGLAAMILINEADRLDLDALIGW 247 (436)
Q Consensus 183 -~LL~~~~~~~~~~~~~yI---lscQ~~dGGFg~~-----------pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~w 247 (436)
.+.+. ...+++.+++ ...++.+|+|+.. .+..+++..|.+||.+|...+........+.++|
T Consensus 189 L~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~W 265 (292)
T cd02897 189 LTLAGS---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKW 265 (292)
T ss_pred HHHcCC---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHH
Confidence 22331 1122333333 2334445666532 1223567778888888877663222345678889
Q ss_pred eeeeccccccccccc
Q 013798 248 VVFRQGVEGGFQGRT 262 (436)
Q Consensus 248 L~~rQ~~~GGF~gr~ 262 (436)
|.+.|..+|||..-.
T Consensus 266 L~~~q~~~Ggf~sTQ 280 (292)
T cd02897 266 LAKQRNSLGGFSSTQ 280 (292)
T ss_pred HHHcCCCCCCcccHH
Confidence 999999999998543
No 48
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.79 E-value=1.2e-10 Score=98.04 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=39.2
Q ss_pred hhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhc-cHHHhhhccCeeeeeceeccccCCCCCCccccCcch
Q 013798 146 SKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTF 224 (436)
Q Consensus 146 ~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~-~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~Ty 224 (436)
+++++||.+.|++||||.+... .++..+++++.++..++.. ....++++++||+++|++||||+..+.. +...|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~~--~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGGE--YVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred cccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCCC--CHHHHH
Confidence 4689999999999999987643 3454465555555555432 2355799999999999999999987433 344666
Q ss_pred hhHHHHHhhhcc-ccCCcccccceeeeecc
Q 013798 225 CGLAAMILINEA-DRLDLDALIGWVVFRQG 253 (436)
Q Consensus 225 cAlaaL~llg~~-~~~~~~~l~~wL~~rQ~ 253 (436)
.++++|.+.+.. +...+++.++||.+.|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 777777666553 22347899999988764
No 49
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.73 E-value=3.9e-09 Score=88.78 Aligned_cols=105 Identities=25% Similarity=0.341 Sum_probs=33.3
Q ss_pred cchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhh
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRA 174 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~ 174 (436)
+++++||++.|++||||+... .++...|++++.+|..++.....+.+ ++.++||.+.|++||+|...+.....+
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai--~ka~~~l~~~Q~~dG~w~~~~~~~~~~-- 75 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAI--KKAIDWLLSHQNPDGGWGYSGGEYVSM-- 75 (109)
T ss_dssp -----------------------------------------TS-SSBSS--HHHHHHHHH---TTS--S-TS--HHHH--
T ss_pred ccccccccccccccccccccc--cccccccccccccccccCCCCcHHHH--HHHHHHHHHhcCCCCCCCCcCCCCHHH--
Confidence 578999999999999998653 36788999999999988864222333 789999999999999998773322222
Q ss_pred hhhHHHHHHHHhh-ccHHHhhhccCeeeeece
Q 013798 175 CYTAISVASILNI-LDDELLQNVGNYILSCQT 205 (436)
Q Consensus 175 tY~a~~~~~LL~~-~~~~~~~~~~~yIlscQ~ 205 (436)
+-.++.++.+.+. ...+.++++++||++.|.
T Consensus 76 t~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 76 TAAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 2233333333332 245668999999988754
No 50
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.39 E-value=7.5e-07 Score=87.20 Aligned_cols=114 Identities=11% Similarity=0.028 Sum_probs=76.7
Q ss_pred hhhcchhHhhhccCCCCCCCCCCCCC-CchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccC---
Q 013798 92 DLEDRTIEFLSRCQDPNGGYGGGPGQ-MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA--- 167 (436)
Q Consensus 92 ~~~~~~i~~l~~~q~~dGGF~~~~~~-~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~--- 167 (436)
..+++.+++|.++|++||||+..++. .++.+.|.+++.+|...+.....+.--.++.++||.+.|++||+|.....
T Consensus 49 ~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~ 128 (282)
T cd02891 49 EYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIH 128 (282)
T ss_pred HHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccC
Confidence 34677889999999999999988877 89999999999999876532111111146789999999999999986432
Q ss_pred ------cccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeece
Q 013798 168 ------GEIDVRACYTAISVASILNILDDELLQNVGNYILSCQT 205 (436)
Q Consensus 168 ------ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~ 205 (436)
...++..+-.++.++...+......+.++++||.+...
T Consensus 129 ~~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 129 REMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLD 172 (282)
T ss_pred HhhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhcc
Confidence 11222122222222322343334567889999987554
No 51
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.32 E-value=1.4e-06 Score=84.40 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=90.7
Q ss_pred HhhhccCCCCCCCCCC-CCCCchhhHHHHHHHHHHhccCCCcccccc---chhHHHHHHhhcCCCCcccccc-------C
Q 013798 99 EFLSRCQDPNGGYGGG-PGQMPHLATTYAAVNALISLGGEKSLPSIN---RSKVYTFLKCMKDPSGAFRMHD-------A 167 (436)
Q Consensus 99 ~~l~~~q~~dGGF~~~-~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id---~~~~~~~L~~~Q~~dGgF~~~~-------~ 167 (436)
+-+++.+++||+|+.. ....++.+.|-+++.+|.....- -.|| ..++++||.+.|++||+|.... .
T Consensus 4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~---i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~ 80 (246)
T PF07678_consen 4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKY---IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQ 80 (246)
T ss_dssp HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTT---S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGS
T ss_pred HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccC
Confidence 3467788999999988 66789999999999999887642 3333 3579999999999999997531 1
Q ss_pred cccchhhhhhHHHHHHHHhhc---------cHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhcccc
Q 013798 168 GEIDVRACYTAISVASILNIL---------DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 238 (436)
Q Consensus 168 ge~D~r~tY~a~~~~~LL~~~---------~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~ 238 (436)
+..+-..+..|.++.+|+... ....++++++||.+-. + .. .+ .|+ -||.+.++.-..+.
T Consensus 81 g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~--~-~~-------~~-~Y~-lAl~aYAL~la~~~ 148 (246)
T PF07678_consen 81 GGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHL--D-NI-------QD-PYT-LALVAYALALAGDS 148 (246)
T ss_dssp GGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHH--G-CT-------SS-HHH-HHHHHHHHHHTTTC
T ss_pred CCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhc--c-cc-------CC-HHH-HHHHHHHHHhhccc
Confidence 211222355666666665432 2356889999996531 0 00 01 122 25555444332234
Q ss_pred CCcccccceeeeeccccccccc
Q 013798 239 LDLDALIGWVVFRQGVEGGFQG 260 (436)
Q Consensus 239 ~~~~~l~~wL~~rQ~~~GGF~g 260 (436)
...+++.+-|.++...+||...
T Consensus 149 ~~~~~~~~~L~~~a~~~~~~~~ 170 (246)
T PF07678_consen 149 PQASKLLNKLNSMATTEGGLRY 170 (246)
T ss_dssp HHHHHHHHHHHCHCEETTTTCE
T ss_pred chHHHHHHHHHHhhhhccccCc
Confidence 4556677777776666666643
No 52
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.12 E-value=3.7e-06 Score=88.34 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=113.7
Q ss_pred hhcchhHhhhccCCCCCCCCCCCCC-------------------CchhhHHHHHHHHHHhccC-CCccccccchhHHHHH
Q 013798 93 LEDRTIEFLSRCQDPNGGYGGGPGQ-------------------MPHLATTYAAVNALISLGG-EKSLPSINRSKVYTFL 152 (436)
Q Consensus 93 ~~~~~i~~l~~~q~~dGGF~~~~~~-------------------~sh~~~Ty~Al~~L~~Lg~-~~~l~~id~~~~~~~L 152 (436)
+-+..++||...|+..|||...+.. .+-+..|-..+..|..+.. .++.+....++++.||
T Consensus 282 ~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~L 361 (517)
T COG1657 282 NFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWL 361 (517)
T ss_pred hHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhh
Confidence 3455899999999999988764321 2333334444444444432 1111123456899999
Q ss_pred HhhcCCCCccccccCcccchhhhhhHHHHHHHHhhcc-----HHHhhhccCeeeeeceeccccCCCCCC---------c-
Q 013798 153 KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD-----DELLQNVGNYILSCQTYEGGIAGEPGS---------E- 217 (436)
Q Consensus 153 ~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~-----~~~~~~~~~yIlscQ~~dGGFg~~pg~---------e- 217 (436)
++.|.++|+|.+.++ ++++|..+..++.+.... ...+.+++.|+.+||++||||+..-.. +
T Consensus 362 L~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~ 437 (517)
T COG1657 362 LSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTES 437 (517)
T ss_pred hhhccccCceeeEEE----EEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccccccc
Confidence 999999999998874 667888877776664332 246899999999999999999974221 2
Q ss_pred cccCcchhhHHHHHhhhccccCCcccccceeeeeccccccccccc
Q 013798 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT 262 (436)
Q Consensus 218 sh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~ 262 (436)
+=.-.|-+|+..+....+.+...++..++.+.++|.++|...+++
T Consensus 438 sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~~ 482 (517)
T COG1657 438 SLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREAE 482 (517)
T ss_pred hhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccce
Confidence 333456677777766666544457889999999999887666554
No 53
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=97.86 E-value=9.2e-06 Score=79.50 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=75.8
Q ss_pred hhHHHHHHhhcCCCCccccccCc-ccchhhhhhHHHHHHHH---hhccHHHhhhccCeeeeeceeccccCCCCC------
Q 013798 146 SKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYTAISVASIL---NILDDELLQNVGNYILSCQTYEGGIAGEPG------ 215 (436)
Q Consensus 146 ~~~~~~L~~~Q~~dGgF~~~~~g-e~D~r~tY~a~~~~~LL---~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg------ 215 (436)
++.+++|.++|++||||...++. ..++..|-.++..+... +..+...++++++||.+.|+.||+|.....
T Consensus 52 ~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~ 131 (282)
T cd02891 52 RKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREM 131 (282)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhh
Confidence 46889999999999999876554 45553333333333322 223456689999999999999999986432
Q ss_pred ---CccccCcchhhHHHHHhhhccccCCcccccceeeeec
Q 013798 216 ---SEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQ 252 (436)
Q Consensus 216 ---~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ 252 (436)
..+....|.+++.+|...|......+.+.++||.++.
T Consensus 132 ~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~ 171 (282)
T cd02891 132 KGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQL 171 (282)
T ss_pred cCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhc
Confidence 2344567888888888888754445678899998765
No 54
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.84 E-value=6.8e-06 Score=79.67 Aligned_cols=188 Identities=22% Similarity=0.319 Sum_probs=114.1
Q ss_pred hcCCcccee---cCCCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhccCCCCCCCCCCCC-----C----CchhhHH
Q 013798 59 QLGPSFCSL---DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGGPG-----Q----MPHLATT 124 (436)
Q Consensus 59 ~lp~~~~~~---d~~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~~~~-----~----~sh~~~T 124 (436)
.-+++|... ..+..|++=|++..+..... .+++....++++||.+.|++||.|..... + ...+..|
T Consensus 11 ~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lT 90 (246)
T PF07678_consen 11 RSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALT 90 (246)
T ss_dssp -TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHH
T ss_pred CCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeeh
Confidence 457888766 33567999999988887664 46777889999999999999999975311 1 2356667
Q ss_pred HHHHHHHHhccCC----CccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhc-cHHHhhhccCe
Q 013798 125 YAAVNALISLGGE----KSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGNY 199 (436)
Q Consensus 125 y~Al~~L~~Lg~~----~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~-~~~~~~~~~~y 199 (436)
-+.+.+|.-.+.- ........+++++||.+... .+...|....+.+.|-.. .....+++.+-
T Consensus 91 A~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~-------------~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~ 157 (246)
T PF07678_consen 91 AYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD-------------NIQDPYTLALVAYALALAGDSPQASKLLNK 157 (246)
T ss_dssp HHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG-------------CTSSHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc-------------ccCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 6766666655521 00111224678888875511 122355543333323222 34556666777
Q ss_pred eeeeceeccccCCCCCCc--------------cccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccc
Q 013798 200 ILSCQTYEGGIAGEPGSE--------------AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 200 IlscQ~~dGGFg~~pg~e--------------sh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
|.+....+||...-+... ..+..|.+||.++... .+.......++||.+.|...|||..-
T Consensus 158 L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~~Ggf~ST 231 (246)
T PF07678_consen 158 LNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNSGGGFGST 231 (246)
T ss_dssp HHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTTTSSTSSH
T ss_pred HHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCCccCcH
Confidence 777777766653211111 2345666666555444 33345678999999999999999864
No 55
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=97.77 E-value=3.2e-05 Score=82.75 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=128.4
Q ss_pred HHHHHhhhhcCCcc---------ceecCCCcchhHHHHHHHHhhcccchhh---hhcchhHhhhccCCC---C-------
Q 013798 51 EYLLRGLQQLGPSF---------CSLDANRPWICYWILHSMALLGEFVDAD---LEDRTIEFLSRCQDP---N------- 108 (436)
Q Consensus 51 ~yl~~~l~~lp~~~---------~~~d~~r~~~~yw~l~~L~lL~~~~~~~---~~~~~i~~l~~~q~~---d------- 108 (436)
+++++++...|+-. ++.. +.+|.+=++|.++-.-+.. ++ ...+.-+||.+.|.. .
T Consensus 388 ~~Fkkhl~Ri~d~lw~gedGmkmq~~~-sQ~Wdt~falqalla~~~~--~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~y 464 (760)
T KOG0497|consen 388 DAFKKHLARIPDFLWIAEDGMKMQGFN-SQLWDTAFALQALLAAGLV--DEFRSTLVKAYDFLKKSQVRENPPGDFKKMY 464 (760)
T ss_pred HHHHHHhccccCeEEEcCCCceEeecc-hhHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhhcccccCCCcchhhhe
Confidence 45666665555432 2233 6788888888877665542 22 345677899887742 2
Q ss_pred -----CCCCCCCCC--CchhhHHHHHHHHHHhccCC---Cccccccchh---HHHHHHhhcCCCCccccc----------
Q 013798 109 -----GGYGGGPGQ--MPHLATTYAAVNALISLGGE---KSLPSINRSK---VYTFLKCMKDPSGAFRMH---------- 165 (436)
Q Consensus 109 -----GGF~~~~~~--~sh~~~Ty~Al~~L~~Lg~~---~~l~~id~~~---~~~~L~~~Q~~dGgF~~~---------- 165 (436)
||++.+..+ -+-...|-=|+.+..+++.. ..-..++.++ .++.|..+|..+|||..-
T Consensus 465 R~~~kG~wtfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE 544 (760)
T KOG0497|consen 465 RHISKGGWTFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLE 544 (760)
T ss_pred eccccccccccccccceeeccccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHH
Confidence 343333221 12233455566666666542 1234566666 567788999999999742
Q ss_pred ------cCcccchhhhh--h---HHHHHHHHhh-cc-------HHHhhhccCeeeeeceeccccCCCCCCccccCcchhh
Q 013798 166 ------DAGEIDVRACY--T---AISVASILNI-LD-------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCG 226 (436)
Q Consensus 166 ------~~ge~D~r~tY--~---a~~~~~LL~~-~~-------~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycA 226 (436)
+.+..++...| | ++..+..... .+ ...++++++||.+.|.+||.+-++=|. --...|+.|
T Consensus 545 ~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgv-CFtY~t~Fa 623 (760)
T KOG0497|consen 545 LLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGV-CFTYGTWFA 623 (760)
T ss_pred hcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhH-HHHHHHHHh
Confidence 12334443444 2 2222222221 11 245789999999999999998664432 234567888
Q ss_pred HHHHHhhhccc--cCCcccccceeeeecccccccccc
Q 013798 227 LAAMILINEAD--RLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 227 laaL~llg~~~--~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
+-+|+..|+.. ...+.++++||++.|..+||+.-.
T Consensus 624 ~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs 660 (760)
T KOG0497|consen 624 LRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGES 660 (760)
T ss_pred cchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccc
Confidence 88998888753 235789999999999999998754
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=97.14 E-value=0.00044 Score=73.03 Aligned_cols=225 Identities=19% Similarity=0.178 Sum_probs=128.5
Q ss_pred cchhHhhhccCCCCCCCCCCCCCCchhhHHH-HHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccC--cccc
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPGQMPHLATTY-AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA--GEID 171 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty-~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~--ge~D 171 (436)
...+.++...|-.||||.......+-++.+. .|+....++..+ -+..+...|-...+..-|+|..... +..|
T Consensus 189 ~~~~~~~l~~q~wD~~f~~~~~~~~g~~~~~~~aiaka~~~L~~-----kq~~~~~~~~~~~~~~~g~W~f~~~~~~ypd 263 (517)
T COG1657 189 GRGLAWLLGSQVWDGGFIRRALLVAGLAETPIPAIAKALMFLLD-----KQVLKYADWAVKRKFSPGGWGFSNINTGYPD 263 (517)
T ss_pred ccccccccccccccchhhhhhhhhcCccccchHhHHhhhhhhHH-----HHHHHhhccccccccCCCccceeecccCCCC
Confidence 3345666777888999987666555555555 333332222110 0111223333334445676665432 3333
Q ss_pred hhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCC--------------ccccC-----cchhhHHHHHh
Q 013798 172 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGS--------------EAHGG-----YTFCGLAAMIL 232 (436)
Q Consensus 172 ~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~--------------esh~~-----~TycAlaaL~l 232 (436)
.. .++. ++..+...-+..+.+..++||...|+..|||...+.. ..|.. -|-..+.+|+-
T Consensus 264 ~d-~T~~-~~~al~~~~~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a 341 (517)
T COG1657 264 AD-DTAG-VVRALIGVQSLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAA 341 (517)
T ss_pred ch-hhhH-HHHHHHhhcchhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhh
Confidence 31 2222 2333344444567778999999999999999853211 12222 22233444444
Q ss_pred hhccc----cCCcccccceeeeecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCc
Q 013798 233 INEAD----RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQ 308 (436)
Q Consensus 233 lg~~~----~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (436)
++... ...+++.+.||+++|.++|-+-|+-. +||.|=..+.+..+...... +
T Consensus 342 ~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~---~----------------- 397 (517)
T COG1657 342 LNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGET---D----------------- 397 (517)
T ss_pred hhhccccccCCcccHHHhhhhhhccccCceeeEEE----EEEEEehhhhhhhhhccCcc---c-----------------
Confidence 44332 35688999999999999998887743 56766555555444332100 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCC
Q 013798 309 TTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGL 384 (436)
Q Consensus 309 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~L 384 (436)
| -..-...+..|+..| |+++||+..-=...+|.+++.- .+.|
T Consensus 398 -------~-------------------------~~~~v~~~~~~l~~~-~~~~~Gw~e~~~~~~~~~~~~t-~~sl 439 (517)
T COG1657 398 -------E-------------------------NEVLVRKLISWLVSK-QMPDGGWGEAKEAISDPVYTGT-ESSL 439 (517)
T ss_pred -------c-------------------------chHHHHHHHHHhhhc-cccCCCcccccccccccccccc-cchh
Confidence 0 012336788898887 9999999997666777777654 4433
No 57
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.34 Score=57.68 Aligned_cols=87 Identities=11% Similarity=0.212 Sum_probs=58.3
Q ss_pred HHHHHHHhhcccchhhhhcchhHhhh-------ccCCCCCCCCCCC--CCCchhhHHHHHHHHHHhccCCCccccccchh
Q 013798 77 WILHSMALLGEFVDADLEDRTIEFLS-------RCQDPNGGYGGGP--GQMPHLATTYAAVNALISLGGEKSLPSINRSK 147 (436)
Q Consensus 77 w~l~~L~lL~~~~~~~~~~~~i~~l~-------~~q~~dGGF~~~~--~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~ 147 (436)
+++.=|...+. +.++.+++++++|. ..+++||.|+..- ...+..|-|-+.+.++......-.++.--..+
T Consensus 950 ~v~~YL~~t~q-~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~ 1028 (1436)
T KOG1366|consen 950 YVLKYLPKTNQ-LTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQ 1028 (1436)
T ss_pred hHHHHHhhhhc-cChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHH
Confidence 34443444444 55677788888873 4568999987532 25677888888888887764321122222357
Q ss_pred HHHHHHhhcCCCCcccc
Q 013798 148 VYTFLKCMKDPSGAFRM 164 (436)
Q Consensus 148 ~~~~L~~~Q~~dGgF~~ 164 (436)
+++||...|.++|+|.-
T Consensus 1029 a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 1029 ALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHhhccCceEec
Confidence 99999999999999974
No 58
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=92.30 E-value=0.32 Score=48.23 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=45.3
Q ss_pred hhhhcchhHhhhccCCCCCCCCCCCC---C-Cch-----hhHHHHHHHHHHhccC-CCcccccc----------chhHHH
Q 013798 91 ADLEDRTIEFLSRCQDPNGGYGGGPG---Q-MPH-----LATTYAAVNALISLGG-EKSLPSIN----------RSKVYT 150 (436)
Q Consensus 91 ~~~~~~~i~~l~~~q~~dGGF~~~~~---~-~sh-----~~~Ty~Al~~L~~Lg~-~~~l~~id----------~~~~~~ 150 (436)
.+...+.++||++.|+++|||+...- . ..| -++ -.++..|..+-. ...+..++ .++.++
T Consensus 66 ~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am-~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid 144 (290)
T TIGR02474 66 RDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAM-VNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIE 144 (290)
T ss_pred HHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHH-HHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHH
Confidence 34567899999999999999986421 1 111 111 133334433211 11111221 247899
Q ss_pred HHHhhcCCCCccccccC
Q 013798 151 FLKCMKDPSGAFRMHDA 167 (436)
Q Consensus 151 ~L~~~Q~~dGgF~~~~~ 167 (436)
||++.|.++||+.+.+.
T Consensus 145 ~ILktQ~~~gg~~t~Wg 161 (290)
T TIGR02474 145 CILKTQVVQNGKLTVWC 161 (290)
T ss_pred HHHHhhcccCCcCCchh
Confidence 99999999988876543
No 59
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=91.61 E-value=0.074 Score=52.68 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=58.6
Q ss_pred cccchhhhhhHHHHHHHH-hh----ccHHHhhhccCeeeeeceeccccCCCCC--CccccCcchh---hHHHHHhhhcc-
Q 013798 168 GEIDVRACYTAISVASIL-NI----LDDELLQNVGNYILSCQTYEGGIAGEPG--SEAHGGYTFC---GLAAMILINEA- 236 (436)
Q Consensus 168 ge~D~r~tY~a~~~~~LL-~~----~~~~~~~~~~~yIlscQ~~dGGFg~~pg--~esh~~~Tyc---AlaaL~llg~~- 236 (436)
+..|=..|+..+..+.-+ .. .-...+.++++||++.|+++|||...-. ..-|...||. .+.+|.+|...
T Consensus 39 ~TiDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~ 118 (290)
T TIGR02474 39 GTIDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIA 118 (290)
T ss_pred ccccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHH
Confidence 345555677666544322 11 1135678999999999999999997421 2233344553 34455554321
Q ss_pred ---c-------------cCCcccccceeeeecccccccccc
Q 013798 237 ---D-------------RLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 237 ---~-------------~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
. ..-++++++||+..|...||..++
T Consensus 119 ~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~ 159 (290)
T TIGR02474 119 NGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTV 159 (290)
T ss_pred hccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCc
Confidence 0 112578999999999988888766
No 60
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=74.78 E-value=0.85 Score=46.02 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=67.2
Q ss_pred HHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHH---hh-cc--------HHHhh
Q 013798 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---NI-LD--------DELLQ 194 (436)
Q Consensus 127 Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL---~~-~~--------~~~~~ 194 (436)
+|.+|+..+. .+....+.+++...+.. |.....-.+|+ .|++++++. +. .. ...++
T Consensus 151 ~vLALCv~~~-----~~~~~~v~kL~~~~~~~---~~~~~~~sVDT----~AmA~LALtCv~~~~~~~~~~~~~i~~~i~ 218 (326)
T PF01122_consen 151 GVLALCVHNK-----RVSLSVVAKLLKAENHN---FYHGSQFSVDT----GAMAVLALTCVKNSNPNGPELRRRIQQAIR 218 (326)
T ss_dssp HHHHHHHTTH-----HHHHHHHHHHHHHHHSS---TSS-STCHHHH----HHHHHHHHHHHHTTTSTTGGGHHHHHHHHH
T ss_pred HHHHHHccCC-----CcCHHHHHHHHHHHHhh---cccCCCCCccH----HHHHHHHHHHHhccCcCcHhHHHHHHHHHH
Confidence 4555565552 23334566666665543 22222234576 456666553 11 11 13467
Q ss_pred hccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhcccc---CCcccccceeeeeccccccccc
Q 013798 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR---LDLDALIGWVVFRQGVEGGFQG 260 (436)
Q Consensus 195 ~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~---~~~~~l~~wL~~rQ~~~GGF~g 260 (436)
++++.|++-|.+||-||. ...|--|+.+|...+.... .+-.++.++|... ..+|.|+.
T Consensus 219 ~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~G~F~n 279 (326)
T PF01122_consen 219 SLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQGAFQN 279 (326)
T ss_dssp HHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTTTTT-S
T ss_pred HHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhcCCCCC
Confidence 888999999999999984 6788899999988876432 3456788888763 35798883
No 61
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=66.34 E-value=3.3 Score=41.81 Aligned_cols=63 Identities=27% Similarity=0.223 Sum_probs=41.6
Q ss_pred hcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCcccc
Q 013798 94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM 164 (436)
Q Consensus 94 ~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~ 164 (436)
.+++++.|.+.|.+||-|| ++.+|--|+++|...+....-..-+..++.+++.+-. ++|.|..
T Consensus 217 i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 217 IRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-S
T ss_pred HHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCCC
Confidence 4566778889999999998 4667999999998887532111233467888887743 5899954
No 62
>PLN02279 ent-kaur-16-ene synthase
Probab=62.78 E-value=11 Score=42.79 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=32.0
Q ss_pred cchhHhhhccCCCCCCCCCCCCC----CchhhHHHHHHHHHHhcc
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPGQ----MPHLATTYAAVNALISLG 135 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~~----~sh~~~Ty~Al~~L~~Lg 135 (436)
.+.++||++.|.+||+||..+.. .--+.+|.+||.+|.--+
T Consensus 76 p~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~ 120 (784)
T PLN02279 76 PECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWG 120 (784)
T ss_pred hHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHh
Confidence 46899999999999999964321 235688999999997754
No 63
>PLN02592 ent-copalyl diphosphate synthase
Probab=61.53 E-value=8.2 Score=43.73 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=38.3
Q ss_pred cchhHhhhccCCCCCCCCCCCC--CCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHh
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPG--QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC 154 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~--~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~ 154 (436)
.+.++||+..|.+||+||..+. ..--+.+|.+||.+|.--+.. .-..++.+.||.+
T Consensus 118 P~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~rGl~fi~~ 175 (800)
T PLN02592 118 PSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH----PEKCEKGMSFFRE 175 (800)
T ss_pred HHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc----HHHHHHHHHHHHH
Confidence 3689999999999999997532 123568899999888663321 1112456677764
No 64
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=54.58 E-value=53 Score=39.90 Aligned_cols=66 Identities=20% Similarity=0.525 Sum_probs=46.6
Q ss_pred hhHHHHHHhhh------hcCCccceecC----CCcchhHHHHHHHHhhccc--chhhhhcchhHhhhccCCCCCCCCC
Q 013798 48 NHVEYLLRGLQ------QLGPSFCSLDA----NRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGG 113 (436)
Q Consensus 48 ~h~~yl~~~l~------~lp~~~~~~d~----~r~~~~yw~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~ 113 (436)
+-++||..+.+ ..+++|...-. .-.|++=|++.++..-... +++....++++|+...|.++|-|--
T Consensus 968 ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 968 KALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEec
Confidence 44566665543 34667765432 3459998998888877653 5677788999999999999987753
No 65
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=53.27 E-value=20 Score=38.68 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.3
Q ss_pred hhcchhHhhhccCCCCCCCCCC
Q 013798 93 LEDRTIEFLSRCQDPNGGYGGG 114 (436)
Q Consensus 93 ~~~~~i~~l~~~q~~dGGF~~~ 114 (436)
..+++|+.|.+||.+||-++..
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~ 105 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTY 105 (520)
T ss_pred HHHHHHHHHHHhccCCceeccc
Confidence 4567899999999999855543
No 66
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.27 E-value=1.3e+02 Score=31.08 Aligned_cols=210 Identities=20% Similarity=0.225 Sum_probs=109.6
Q ss_pred cchhhhHHHHHHHHHHHhcC---CCchhhHHHHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccch
Q 013798 14 REQSMVLNDVNMLYHIYATV---PPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD 90 (436)
Q Consensus 14 ~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~ 90 (436)
.+|.-||.....+.--.... ++- ..-.|++.+++|+..-. -..-+.|=.++.-.+-..|.-+|.+.+
T Consensus 104 ~dQ~~VEaa~la~aL~~a~~~lW~~L-----~~~~k~~l~~wL~~~~~-----~~~~~nNW~lF~v~v~~~L~~~G~~~d 173 (361)
T PF10022_consen 104 YDQRLVEAASLALALLRAPEWLWDPL-----DEEEKENLVDWLKQIRG-----IKPPDNNWLLFRVMVEAFLKKVGEEYD 173 (361)
T ss_pred chhhHhHHHHHHHHHHHCHHHHHhhC-----CHHHHHHHHHHHHhcCc-----CCCccchhHHHHHHHHHHHHHcCCCCc
Confidence 35777777665543322110 111 12456667777775322 122345533444444455666787788
Q ss_pred hhhhcchhHhhhccCCCCCCCCCCCC----CCchhhHHHHHHHHHHhccCCC-ccccccchhHHHHHHh---hcCCCCcc
Q 013798 91 ADLEDRTIEFLSRCQDPNGGYGGGPG----QMPHLATTYAAVNALISLGGEK-SLPSINRSKVYTFLKC---MKDPSGAF 162 (436)
Q Consensus 91 ~~~~~~~i~~l~~~q~~dGGF~~~~~----~~sh~~~Ty~Al~~L~~Lg~~~-~l~~id~~~~~~~L~~---~Q~~dGgF 162 (436)
++..+..++.+.++...||=|+-++. .+...+.=++.+..+.+.++.. .....-++++.+|... ...+||.+
T Consensus 174 ~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~ 253 (361)
T PF10022_consen 174 EERIDYDLERIEEWYLGDGWYSDGPEFQFDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAA 253 (361)
T ss_pred HHHHHHHHHHHHHHhccCCccccCCccCCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 77788888888888888876665553 2333444445555556666531 1111223556666654 34588887
Q ss_pred ccccCcccch--h-hhhhHHHHHHHHhhc-----cHH----HhhhccCeeeee-ce--ecc----ccCCC-C---CCccc
Q 013798 163 RMHDAGEIDV--R-ACYTAISVASILNIL-----DDE----LLQNVGNYILSC-QT--YEG----GIAGE-P---GSEAH 219 (436)
Q Consensus 163 ~~~~~ge~D~--r-~tY~a~~~~~LL~~~-----~~~----~~~~~~~yIlsc-Q~--~dG----GFg~~-p---g~esh 219 (436)
-.- |.+ + | .+...++.+++.+.+ +.- ...+.++|..+. .. .|| ||.+. + ..-+-
T Consensus 254 ~~~--GRS-ltYRfA~~a~~~~~a~~~~lp~~~~~~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~ 330 (361)
T PF10022_consen 254 PPF--GRS-LTYRFAAFAFLAAAALAGVLPEPLISPGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNS 330 (361)
T ss_pred CCc--ccc-HHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCC
Confidence 532 111 2 1 122334444555542 211 223444444443 23 334 44442 1 12367
Q ss_pred cCcchhhHHHHHhhhcc
Q 013798 220 GGYTFCGLAAMILINEA 236 (436)
Q Consensus 220 ~~~TycAlaaL~llg~~ 236 (436)
.++-|+|..++..|+.+
T Consensus 331 ~gSpYwa~k~Fl~L~Lp 347 (361)
T PF10022_consen 331 PGSPYWASKAFLPLGLP 347 (361)
T ss_pred CCCHHHHHHHHHHhcCC
Confidence 78889999998777654
No 67
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=43.18 E-value=12 Score=37.29 Aligned_cols=64 Identities=27% Similarity=0.263 Sum_probs=33.7
Q ss_pred cchhhhhhHHHHHHHHhhc--c---HHHhhhccCeeeeeceeccccCCC-CC-CccccCcch---hhHHHHHhh
Q 013798 170 IDVRACYTAISVASILNIL--D---DELLQNVGNYILSCQTYEGGIAGE-PG-SEAHGGYTF---CGLAAMILI 233 (436)
Q Consensus 170 ~D~r~tY~a~~~~~LL~~~--~---~~~~~~~~~yIlscQ~~dGGFg~~-pg-~esh~~~Ty---cAlaaL~ll 233 (436)
.|=..|+..+..+.-+-.. + .....+.++||++-|.++|||... |. ..-|...|| ..+-.|.+|
T Consensus 36 iDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL 109 (289)
T PF09492_consen 36 IDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELL 109 (289)
T ss_dssp -GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHH
Confidence 4545566655444322111 1 245789999999999999999875 32 224555566 344444444
No 68
>PLN02592 ent-copalyl diphosphate synthase
Probab=36.52 E-value=1.9e+02 Score=33.16 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=72.0
Q ss_pred hhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccch-hhhhcchhHhhhccCCCCC-CCCCCCCCCchhh
Q 013798 45 QRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD-ADLEDRTIEFLSRCQDPNG-GYGGGPGQMPHLA 122 (436)
Q Consensus 45 ~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~-~~~~~~~i~~l~~~q~~dG-GF~~~~~~~sh~~ 122 (436)
..++-.+||.+.+++.+++.=..=+..+.---|.+.+|.-||.... +...++++++|.++-...| ||++ ....+++.
T Consensus 283 ~d~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld 361 (800)
T PLN02592 283 KDENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDID 361 (800)
T ss_pred CchHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCHH
Confidence 4566778998877776554322222334456778888888886422 3456788888887644433 4432 12246788
Q ss_pred HHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCc-ccchhhh
Q 013798 123 TTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-EIDVRAC 175 (436)
Q Consensus 123 ~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~g-e~D~r~t 175 (436)
.|--++..|...|.+ +..+-.-+| . .+|.|....++ ..|++..
T Consensus 362 ~TALaFRLLRqhGy~-----VS~DvF~~F----~-~~g~F~~~~ge~~~Dv~gl 405 (800)
T PLN02592 362 DTAMGFRLLRLHGHQ-----VSADVFKHF----E-KGGEFFCFAGQSTQAVTGM 405 (800)
T ss_pred HHHHHHHHHHHcCCC-----CChHHHHhh----c-CCCCccccccccccchHHH
Confidence 898999999999963 223322233 2 37888744322 2355443
No 69
>PLN02279 ent-kaur-16-ene synthase
Probab=33.47 E-value=11 Score=42.76 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=37.6
Q ss_pred HHhhhccCeeeeeceeccccCCCCCCc----cccCcchhhHHHHHhhhccccCCcccccceee
Q 013798 191 ELLQNVGNYILSCQTYEGGIAGEPGSE----AHGGYTFCGLAAMILINEADRLDLDALIGWVV 249 (436)
Q Consensus 191 ~~~~~~~~yIlscQ~~dGGFg~~pg~e----sh~~~TycAlaaL~llg~~~~~~~~~l~~wL~ 249 (436)
.....+++||+.-|.+||+||..+... --...|.+||.||.--+.. +..+++.+.||.
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~-~~~~~~gl~fi~ 134 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG-EEQINKGLQFIE 134 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC-cccchhhHHHHH
Confidence 456789999999999999999653221 1235788888777665442 222344445543
No 70
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=23.98 E-value=1.5e+02 Score=32.90 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=66.1
Q ss_pred CCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHH
Q 013798 70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVY 149 (436)
Q Consensus 70 ~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~ 149 (436)
+...-+|+++.++..||.+++..+.+++++-|...+..| ..+..+-.|+.++..|+....+..+ .+++-
T Consensus 122 s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kd----------ds~~s~g~al~~aa~L~~~a~l~~~-~~~ie 190 (636)
T PF05817_consen 122 SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKD----------DSLLSLGYALHAAAQLSKQADLADI-VERIE 190 (636)
T ss_pred ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHhhccchhhhHH-HHHHH
Confidence 344559999999999998875556677777777666553 3555666677888777642111110 02222
Q ss_pred HHHHhhcCCCCccccccCcccchhh-hhhHHHHHHHHhhc---cHHHhhhccCeeeeece
Q 013798 150 TFLKCMKDPSGAFRMHDAGEIDVRA-CYTAISVASILNIL---DDELLQNVGNYILSCQT 205 (436)
Q Consensus 150 ~~L~~~Q~~dGgF~~~~~ge~D~r~-tY~a~~~~~LL~~~---~~~~~~~~~~yIlscQ~ 205 (436)
+-+...-.-||.+-...+|-.-+.. ...+.....-.|.. +...+-+..+||++.++
T Consensus 191 D~v~qaDEv~~~~LqFeggLs~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr~ 250 (636)
T PF05817_consen 191 DAVAQADEVDGKYLQFEGGLSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRRS 250 (636)
T ss_pred HHHHhhhhhcccceeecCCchhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCC
Confidence 2222222234544433333222211 11111111222322 23556788899988653
Done!