Query 013798
Match_columns 436
No_of_seqs 256 out of 1528
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7a_B Farnesyltransferase bet 100.0 6E-92 2.1E-96 729.1 11.1 407 3-435 17-517 (520)
2 2h6f_B Protein farnesyltransfe 100.0 9.1E-84 3.1E-88 665.5 12.3 383 2-435 34-417 (437)
3 3dra_B Geranylgeranyltransfera 100.0 7.4E-81 2.5E-85 632.2 5.5 315 43-432 3-387 (390)
4 1n4q_B Geranyltransferase type 100.0 6.1E-78 2.1E-82 611.4 5.0 309 42-433 18-358 (377)
5 3dss_B Geranylgeranyl transfer 100.0 1.6E-74 5.5E-79 578.6 8.3 307 42-430 16-324 (331)
6 3dss_B Geranylgeranyl transfer 100.0 3.2E-45 1.1E-49 366.5 3.9 272 92-426 18-300 (331)
7 2h6f_B Protein farnesyltransfe 100.0 7.5E-44 2.6E-48 367.7 2.3 275 91-427 72-373 (437)
8 3q7a_B Farnesyltransferase bet 100.0 1.7E-38 5.9E-43 329.3 5.4 283 90-428 59-422 (520)
9 3dra_B Geranylgeranyltransfera 100.0 1.5E-37 5E-42 315.1 -2.6 272 92-427 4-360 (390)
10 1n4q_B Geranyltransferase type 100.0 4.2E-37 1.4E-41 311.9 0.5 271 93-426 21-331 (377)
11 2sqc_A Squalene-hopene cyclase 99.8 9.1E-21 3.1E-25 204.8 8.6 222 46-273 333-609 (631)
12 2sqc_A Squalene-hopene cyclase 99.8 2E-19 6.9E-24 194.3 5.6 211 70-281 309-566 (631)
13 1w6k_A Lanosterol synthase; cy 99.8 3.6E-19 1.2E-23 194.9 5.6 209 70-279 384-660 (732)
14 1w6k_A Lanosterol synthase; cy 99.7 2.2E-18 7.5E-23 188.7 7.1 224 46-270 411-701 (732)
15 2wy7_A Complement C3D fragment 99.4 7.9E-14 2.7E-18 137.8 4.8 163 94-261 56-276 (310)
16 1qqf_A Protein (complement C3D 99.4 1.3E-13 4.5E-18 133.9 6.0 163 94-261 40-260 (277)
17 1hzf_A Complement factor C4A; 98.9 4.3E-10 1.5E-14 113.6 4.0 73 93-165 92-164 (367)
18 2pn5_A TEP1R, thioester-contai 98.8 2.2E-09 7.7E-14 124.8 4.0 162 95-260 875-1087(1325)
19 1qqf_A Protein (complement C3D 98.8 8.3E-09 2.8E-13 99.9 6.8 177 47-232 34-272 (277)
20 2wy7_A Complement C3D fragment 98.7 2.2E-08 7.6E-13 98.6 6.5 169 58-235 67-291 (310)
21 2hr0_B Complement C3 alpha' ch 98.5 7E-08 2.4E-12 108.3 6.2 159 95-261 302-521 (915)
22 4acq_A Alpha-2-macroglobulin; 98.4 9.3E-08 3.2E-12 111.8 4.3 180 95-280 986-1243(1451)
23 1hzf_A Complement factor C4A; 98.3 1.1E-06 3.8E-11 88.5 7.8 78 58-135 104-197 (367)
24 1r76_A Pectate lyase; A-helica 97.7 6.2E-06 2.1E-10 83.4 1.4 163 94-259 83-334 (408)
25 3prx_B Cobra venom factor; imm 97.5 1.1E-05 3.9E-10 95.1 0.0 172 100-279 1038-1264(1642)
26 1r76_A Pectate lyase; A-helica 97.5 4.3E-05 1.5E-09 77.3 3.2 119 92-211 175-334 (408)
27 2bb6_A TCII, TC II, transcobal 97.5 2.7E-05 9.3E-10 79.1 1.8 115 126-259 141-269 (414)
28 2b39_A C3; thioester, immune d 97.5 0.00013 4.3E-09 86.8 7.6 64 98-164 1052-1119(1661)
29 2hr0_B Complement C3 alpha' ch 97.4 0.00018 6.3E-09 80.6 7.8 167 59-234 313-535 (915)
30 1gxm_A Pectate lyase; mechanis 97.4 2.7E-05 9.4E-10 76.6 0.5 156 96-253 35-251 (332)
31 2pn5_A TEP1R, thioester-contai 97.4 0.00016 5.5E-09 84.1 7.0 180 46-234 867-1102(1325)
32 4fxk_B Complement C4-A alpha c 97.4 0.00016 5.5E-09 79.4 6.1 92 70-164 337-440 (767)
33 4acq_A Alpha-2-macroglobulin; 97.1 0.00052 1.8E-08 80.4 7.2 177 47-234 979-1242(1451)
34 2bb6_A TCII, TC II, transcobal 97.0 0.00044 1.5E-08 70.2 4.7 130 78-231 142-282 (414)
35 1gxm_A Pectate lyase; mechanis 97.0 0.00011 3.8E-09 72.3 -0.1 116 147-262 35-192 (332)
36 3cu7_A Complement C5; Mg domai 96.9 0.0017 5.7E-08 77.3 9.0 64 101-164 1056-1120(1676)
37 2pmv_A Gastric intrinsic facto 96.7 0.00039 1.4E-08 70.2 1.3 110 127-259 120-245 (399)
38 3cu7_A Complement C5; Mg domai 95.3 0.0036 1.2E-07 74.5 0.7 200 46-261 1042-1287(1676)
39 2b39_A C3; thioester, immune d 94.8 0.056 1.9E-06 64.3 8.8 76 60-135 1061-1154(1661)
40 2pmv_A Gastric intrinsic facto 94.3 0.035 1.2E-06 56.0 4.9 62 93-163 184-245 (399)
41 3prx_B Cobra venom factor; imm 94.1 0.0092 3.1E-07 70.6 0.0 102 150-251 1037-1162(1642)
42 4fxk_B Complement C4-A alpha c 93.9 0.049 1.7E-06 59.6 5.5 118 118-235 336-475 (767)
43 3sdr_A Alpha-bisabolene syntha 77.4 5.4 0.00019 43.9 8.4 57 95-155 104-162 (817)
44 3p5p_A Taxadiene synthase; cla 76.9 1.8 6.2E-05 47.2 4.5 58 94-155 55-114 (764)
45 3pya_A ENT-copalyl diphosphate 76.7 1.9 6.4E-05 46.8 4.4 56 95-154 53-110 (727)
46 3s9v_A Abietadiene synthase, c 76.1 1.9 6.6E-05 47.2 4.4 57 95-155 77-135 (785)
47 3s9v_A Abietadiene synthase, c 29.9 2E+02 0.007 31.2 10.0 123 45-177 243-368 (785)
48 3p5p_A Taxadiene synthase; cla 29.5 2.1E+02 0.0073 31.0 10.0 122 46-177 220-344 (764)
49 4b2v_A S64; toxin, ICK; NMR {S 21.2 51 0.0017 20.0 1.8 17 360-376 5-21 (32)
No 1
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=6e-92 Score=729.08 Aligned_cols=407 Identities=37% Similarity=0.637 Sum_probs=340.0
Q ss_pred CCCCCCccccccchhhhHHHHHHHHHHHhcCCC---chhhHHHHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHH
Q 013798 3 PDTEPRGTVTQREQSMVLNDVNMLYHIYATVPP---IAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWIL 79 (436)
Q Consensus 3 ~~~~~~~t~ts~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l 79 (436)
.++|+++|.||++|.+||+.|+++|+....... .......+|+|++|++||+++|..||.+|+++|++|+|++||++
T Consensus 17 ~~~d~~~T~Ts~~Q~~te~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~Hi~yl~~~L~~LP~~y~~~Dasr~wl~Yw~l 96 (520)
T 3q7a_B 17 LPSNSRPSATLDEQAETEDLISQLFDLTADPNALVSEHGKRYSGLRKQEHTQFLASSFFQLPGKFVSLDASRPWLVFWTV 96 (520)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHHHHHHBCCTTCSSCCTTSBCCCCCHHHHHHHHHHHHSCBCGGGGGGGGGHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHhhhCChhhhhcccchHHHHHHHH
Confidence 578999999999999999999999986321100 00111246999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCC--CCCchhhHHHHHHHHHHhccCC---Ccccccc--chhHHHHH
Q 013798 80 HSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGP--GQMPHLATTYAAVNALISLGGE---KSLPSIN--RSKVYTFL 152 (436)
Q Consensus 80 ~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~--~~~sh~~~Ty~Al~~L~~Lg~~---~~l~~id--~~~~~~~L 152 (436)
++|+|||..++++.++++|+||++||+++|||++++ ++.+|+.+||+||++|.+++.. ++++.+| |+++++||
T Consensus 97 ~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL 176 (520)
T 3q7a_B 97 HSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFF 176 (520)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHH
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHH
Confidence 999999977888889999999999999999999999 9999999999999999999974 3578899 99999999
Q ss_pred HhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCC--------------------
Q 013798 153 KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAG-------------------- 212 (436)
Q Consensus 153 ~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~-------------------- 212 (436)
.++|++||||.++.+|+.|+|+||||++++.+||..+.++++++++||++||++|||||.
T Consensus 177 ~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp 256 (520)
T 3q7a_B 177 MRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEP 256 (520)
T ss_dssp HHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CC
T ss_pred HHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCcccccccccccccccccccc
Confidence 999999999999888999999999999999999998889999999999999999999999
Q ss_pred ---CCCCccccCcchhhHHHHHhhhccc------cCCcccccceeeeecc---cccccccccccccccchhccchhHHHH
Q 013798 213 ---EPGSEAHGGYTFCGLAAMILINEAD------RLDLDALIGWVVFRQG---VEGGFQGRTNKLVDGCYSFWQGGVFAL 280 (436)
Q Consensus 213 ---~pg~esh~~~TycAlaaL~llg~~~------~~~~~~l~~wL~~rQ~---~~GGF~gr~~k~~D~cYsfw~~~~l~l 280 (436)
.|+.|||+++||||||+|++|++++ .+|.+++++||++||. ++|||+||+||++|+|||||++++|+|
T Consensus 257 ~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~i 336 (520)
T 3q7a_B 257 SCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPV 336 (520)
T ss_dssp SEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHH
T ss_pred ccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHH
Confidence 6899999999999999999999963 6789999999999997 469999999999999999999999999
Q ss_pred HHHHHhhhcCC-CCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccC
Q 013798 281 LRRFHSIIGES-PTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD 359 (436)
Q Consensus 281 L~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~ 359 (436)
|+.+....... . . .|.+...-. ...+-+.+......++|+++|++|||.|||.
T Consensus 337 L~~~~~~~~~~~~------------~---~~~~~~~~~-----------~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~ 390 (520)
T 3q7a_B 337 AEELVRREKSRKV------------K---KSRIEVFEE-----------EKEGDWEDVPPIPPIFNRVALQEFTLVAAQQ 390 (520)
T ss_dssp HHHHHHHHHHHHC-----------------------------------------------CCCSSCHHHHHHHHHHTTBC
T ss_pred HHHHhhccccccc------------c---ccccccccc-----------ccccccccccccccccCHHHHHHHHHHHccC
Confidence 99974321100 0 0 000000000 0000000000112578999999999988899
Q ss_pred CC---CccCCCCCCCCCcceeeeeccCCchhhccccCC----------CCCC-----------C----------------
Q 013798 360 PR---GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKD----------EDSS-----------P---------------- 399 (436)
Q Consensus 360 ~~---GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~----------~~~~-----------~---------------- 399 (436)
+. |||+|||++.||+|||||+|+|||++||....+ .+.+ +
T Consensus 391 ~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (520)
T 3q7a_B 391 DPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSPSTVSSNRLKFDASKGLPAVKPVAPGGGWKNEDERQNARREI 470 (520)
T ss_dssp CTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEEECHHHHHHHHHHCCTTCCCCCCCCSSTTCSCSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCChhhHHHhhhccccccccccccccccccccccchhhHHHHHHH
Confidence 97 999999999999999999999999999865310 0110 0
Q ss_pred -----------CccccccCCcccccccchhHHHhhhhhhhhhhhhcc
Q 013798 400 -----------LPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 435 (436)
Q Consensus 400 -----------~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~~ 435 (436)
-.+.|+|.+.|.++++||+|||+..++++|++||..
T Consensus 471 ~~~~~~w~~~~~~~~~~g~~~n~~~~~hp~~ni~~~~~~~~~~~f~~ 517 (520)
T 3q7a_B 471 WANALGWIEEEGGEIIVGGKDNRINTTTPVFNILGLRLKPFINYFYC 517 (520)
T ss_dssp HHHHTCEEECTTCCCCTTCGGGCCCCBCTTTCSBHHHHHHHHHHHTT
T ss_pred HhhhhccccccCCceeecCccccccCCCCcccCCHHHHHHHHHHHhh
Confidence 013478999999999999999999999999999964
No 2
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=9.1e-84 Score=665.51 Aligned_cols=383 Identities=49% Similarity=0.868 Sum_probs=342.6
Q ss_pred CCCCCCCccccccchhhhHHHHHHHHHHHhcCCCchhhHHHHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHH
Q 013798 2 EPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHS 81 (436)
Q Consensus 2 ~~~~~~~~t~ts~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~ 81 (436)
+.+++++.|.||++|.+||+.|.++|+.+....... .+.|.+++|++||+++++.+|++|..+|.+|+|++||++++
T Consensus 34 ~~~~~~~~t~ts~~Q~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~hi~~l~~~lq~~~gg~~a~D~~r~~l~y~~l~a 110 (437)
T 2h6f_B 34 RLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVP---RLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHS 110 (437)
T ss_dssp SCCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTTBCC---CCCCCHHHHHHHHHHHTTEECGGGGGGTTCHHHHHHHHHHH
T ss_pred ecccCCCCCCCHHHHHHHHHHHHHHHHHHhhcccCC---cccccHHHHHHHHHHcCCCCCCCcccccCCCccHHHHHHHH
Confidence 357899999999999999999999999876431111 24689999999999998889999999999999999999999
Q ss_pred HHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCc
Q 013798 82 MALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGA 161 (436)
Q Consensus 82 L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGg 161 (436)
|++||..++++.++++++||++||++||||++.+.+.+|+..||+||++|.++|..+.++.++++++++||+++|++|||
T Consensus 111 L~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGs 190 (437)
T 2h6f_B 111 LELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190 (437)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCC
Confidence 99999877778899999999999999999999999999999999999999999964345678899999999999999999
Q ss_pred cccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCc
Q 013798 162 FRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDL 241 (436)
Q Consensus 162 F~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~ 241 (436)
|.++++|+.|+|+|||+|+++.++|..+...++++++||++||++|||||..|+.|||+++|||||++|.++|+.+.+++
T Consensus 191 f~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~ 270 (437)
T 2h6f_B 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNL 270 (437)
T ss_dssp BBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCH
T ss_pred eeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccH
Confidence 99998999999999999999999998877889999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeecc-cccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCC
Q 013798 242 DALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDG 320 (436)
Q Consensus 242 ~~l~~wL~~rQ~-~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 320 (436)
+++++||.+||. .+|||+|||||.+|+|||||++++|.||+.++....+.. ..
T Consensus 271 ~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~-------------------------~~- 324 (437)
T 2h6f_B 271 KSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPA-------------------------LS- 324 (437)
T ss_dssp HHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTT-------------------------CC-
T ss_pred HHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccc-------------------------cc-
Confidence 999999999999 899999999999999999999999999999864221100 00
Q ss_pred CCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCC
Q 013798 321 SSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPL 400 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~ 400 (436)
...+++|.++|++|||.|||++.|||+|+|++.||+|||||+|+|||+++|..... ..
T Consensus 325 ------------------~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~yHT~y~L~gLsl~~~~~~~~----~~ 382 (437)
T 2h6f_B 325 ------------------MSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGA----ML 382 (437)
T ss_dssp ------------------SSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETT----EE
T ss_pred ------------------cccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCHHHHHHHHHHHHHhccccccc----cc
Confidence 00146899999999999999999999999999999999999999999999864311 12
Q ss_pred ccccccCCcccccccchhHHHhhhhhhhhhhhhcc
Q 013798 401 PRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 435 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~~ 435 (436)
.+.++|.+.|.|.++||+||||.++++++++||.+
T Consensus 383 ~~~~~~~~~~~l~~i~p~~~i~~~~~~~~~~~~~~ 417 (437)
T 2h6f_B 383 HDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQ 417 (437)
T ss_dssp EECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHT
T ss_pred cccccCCcccCccccCCcccCCHHHHHHHHHHHHh
Confidence 24577888899999999999999999999999975
No 3
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=7.4e-81 Score=632.16 Aligned_cols=315 Identities=28% Similarity=0.404 Sum_probs=285.6
Q ss_pred HHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhccc-chhhhhcchhHhhhccCCC----CCCCCCCC--
Q 013798 43 ELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQDP----NGGYGGGP-- 115 (436)
Q Consensus 43 ~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~~----dGGF~~~~-- 115 (436)
.|+|+||++|++++|+.||.+|+++|++|+|++||++++|+|||.. +.++.++++++||++||.+ .|||+++|
T Consensus 3 ~l~~~kHiky~~~~L~~Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~ 82 (390)
T 3dra_B 3 QLLINKHEKFFNRCLIGLPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYF 82 (390)
T ss_dssp CCCHHHHHHHHHHHHHCCCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGG
T ss_pred cccHHHHHHHHHHHHHhCCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccC
Confidence 5899999999999999999999999999999999999999999974 3566789999999999765 39999985
Q ss_pred ---C---CCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcC---C-CCcccccc-----------Ccccchhh
Q 013798 116 ---G---QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD---P-SGAFRMHD-----------AGEIDVRA 174 (436)
Q Consensus 116 ---~---~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~---~-dGgF~~~~-----------~ge~D~r~ 174 (436)
+ +.+|+++||+||++|.+||++ .++.+||+++++||.++|+ + ||||.... +++.|+|+
T Consensus 83 ~~~g~~~~~~hl~~Ty~Al~~L~ilg~~-~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~ 161 (390)
T 3dra_B 83 QKTNQKYDCPNLSSTLFALYNLLILKSP-YHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRV 161 (390)
T ss_dssp GGSCTTTSCCBHHHHHHHHHHHHHTTCC-GGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHH
T ss_pred CCCCCccCcccHHHHHHHHHHHHHhCch-hhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHH
Confidence 5 689999999999999999986 5688999999999999999 7 89999543 68999999
Q ss_pred hhhHHHHHHHHhhcc-------------HHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCc
Q 013798 175 CYTAISVASILNILD-------------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDL 241 (436)
Q Consensus 175 tY~a~~~~~LL~~~~-------------~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~ 241 (436)
||||+++++||+..+ .++++++++||++||++||||+..|+.|||+++||||||+|++|+++ ..++
T Consensus 162 ~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~ 240 (390)
T 3dra_B 162 CYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKL 240 (390)
T ss_dssp HHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGC
T ss_pred HHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccH
Confidence 999999999999876 46789999999999999999999999999999999999999999998 4789
Q ss_pred ccccceeeeecc----------------------------cccccccccccccccchhccchhHHHHHHHHHhhhcCCCC
Q 013798 242 DALIGWVVFRQG----------------------------VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPT 293 (436)
Q Consensus 242 ~~l~~wL~~rQ~----------------------------~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~ 293 (436)
+++++||++||. ++|||||||||++|+|||||++++|+||+...
T Consensus 241 ~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~-------- 312 (390)
T 3dra_B 241 KSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNF-------- 312 (390)
T ss_dssp HHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGG--------
T ss_pred HHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhcccc--------
Confidence 999999999998 47999999999999999999999999998511
Q ss_pred ccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCC-CCccCCCCCCCC
Q 013798 294 PVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPR 372 (436)
Q Consensus 294 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~-~GGf~~~P~k~~ 372 (436)
..++|.+++++|||.|+|++ .|||+|+|+++|
T Consensus 313 -----------------------------------------------~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~p 345 (390)
T 3dra_B 313 -----------------------------------------------IKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTP 345 (390)
T ss_dssp -----------------------------------------------GGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCC
T ss_pred -----------------------------------------------ccccCHHHHHHHHHHhccCCCCCCcCCCCCCCC
Confidence 13589999999999999997 899999999999
Q ss_pred CcceeeeeccCCchhhccccCCCCCCCCccccccCCcccccccchhHHHhhhhhhhhhhh
Q 013798 373 DYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEF 432 (436)
Q Consensus 373 D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~ 432 (436)
|+|||||+|+|||++++.. ..|.++||+|+||.+.++++++.
T Consensus 346 D~yHT~~gLagLsl~~~~~------------------~~l~~vdp~~~ip~~~~~~~~~~ 387 (390)
T 3dra_B 346 DPMHSYLALASLSLWNHEK------------------FALQEINPILTITKESYQFFKEE 387 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHH------------------HTCCCEETTTTEEHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCcc------------------CCCceeCchhcCCHHHHHHHHHh
Confidence 9999999999999998731 12678999999999999988753
No 4
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=6.1e-78 Score=611.43 Aligned_cols=309 Identities=29% Similarity=0.549 Sum_probs=285.8
Q ss_pred HHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCC---------CCCCCC
Q 013798 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQD---------PNGGYG 112 (436)
Q Consensus 42 ~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~---------~dGGF~ 112 (436)
+.|.+++|++||+++++.+|.+|+++|++|+|++||++++|++||. ++...++++++||++||+ ++|||+
T Consensus 18 ~~l~~~~H~~y~~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~ 96 (377)
T 1n4q_B 18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR 96 (377)
T ss_dssp CCCCHHHHHHHHHHHHHEECGGGGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred cccCHHHHHHHHHHHhhcCCccccccccchHHHHHHHHHHHHHhCC-CCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence 4689999999999999999999999999999999999999999996 444558999999999999 689999
Q ss_pred CCCCC-----------------CchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccc-cCcccchhh
Q 013798 113 GGPGQ-----------------MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH-DAGEIDVRA 174 (436)
Q Consensus 113 ~~~~~-----------------~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~-~~ge~D~r~ 174 (436)
+.+.+ .+|+.+||+||++|.++|+. ++.++++++++||.++|++||||.+. .+|+.|+|+
T Consensus 97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~--~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~Dirf 174 (377)
T 1n4q_B 97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRF 174 (377)
T ss_dssp SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCC--STTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHH
T ss_pred CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHH
Confidence 98754 59999999999999999964 67899999999999999999999986 679999999
Q ss_pred hhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccC----Ccccccceeee
Q 013798 175 CYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF 250 (436)
Q Consensus 175 tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~----~~~~l~~wL~~ 250 (436)
||||+++++++|..+.++++++++||++||++|||||..|+.|||+++|||||++|++++..+.. +++++++||.+
T Consensus 175 tY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~ 254 (377)
T 1n4q_B 175 VYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254 (377)
T ss_dssp HHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHh
Confidence 99999999999988888999999999999999999999999999999999999999999987654 78999999999
Q ss_pred ecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCC
Q 013798 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGD 330 (436)
Q Consensus 251 rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 330 (436)
|| +|||+|||||++|+|||||++++|+||+..
T Consensus 255 rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~---------------------------------------------- 286 (377)
T 1n4q_B 255 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIF---------------------------------------------- 286 (377)
T ss_dssp TB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCG----------------------------------------------
T ss_pred cC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCc----------------------------------------------
Confidence 99 899999999999999999999999999764
Q ss_pred CccccccccccchhhHHHHHHhhhhhccCC-CCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccccccCCc
Q 013798 331 EHCHFQHREREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYS 409 (436)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~-~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~~~~~~~ 409 (436)
.++|.++|++|||.| |++ .|||+++|++.||+|||||+|+|||++++..
T Consensus 287 -----------~~~d~~~l~~fil~c-Q~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~~~------------------ 336 (377)
T 1n4q_B 287 -----------QYTNFEKNRNYILST-QDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESG------------------ 336 (377)
T ss_dssp -----------GGSCHHHHHHHHHTT-BCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCTT------------------
T ss_pred -----------cccCHHHHHHHHHHH-cCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCC------------------
Confidence 357889999999997 888 8999999999999999999999999998653
Q ss_pred ccccccchhHHHhhhhhhhhhhhh
Q 013798 410 NVLEPVHPVFNIVLDRYHEAHEFF 433 (436)
Q Consensus 410 ~~~~~~~p~~~i~~~~~~~~~~~~ 433 (436)
+.++||+||||.+.++++.++.
T Consensus 337 --l~~i~p~~~i~~~~~~~~~~~~ 358 (377)
T 1n4q_B 337 --ICKVHPALNVSTRTSERLRDLH 358 (377)
T ss_dssp --CCCEETTTTEEHHHHHHHHHHH
T ss_pred --CCCCCCcccCCHHHHHHHHHHH
Confidence 6789999999999999988764
No 5
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1.6e-74 Score=578.62 Aligned_cols=307 Identities=28% Similarity=0.529 Sum_probs=287.9
Q ss_pred HHHhhhhhHHHHHHhh-hhcCCccceecCCCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCch
Q 013798 42 MELQRKNHVEYLLRGL-QQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120 (436)
Q Consensus 42 ~~l~r~~h~~yl~~~l-~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh 120 (436)
.+|+|++|++||++++ +.+|..|...|++|+|++||++++|++||. ++..+++++++||++||++||||++.+++++|
T Consensus 16 ~~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~ 94 (331)
T 3dss_B 16 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPH 94 (331)
T ss_dssp CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBC
T ss_pred hhhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHhhhcCCCCCcCCCCCCCcc
Confidence 4699999999999986 468999999999999999999999999996 67778999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCee
Q 013798 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI 200 (436)
Q Consensus 121 ~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yI 200 (436)
+.+||+||++|.+++. ++.+|++++++||.++|++||||.++++++.|+|+||||++++.++|..+.++++++++||
T Consensus 95 l~~Ty~Al~~L~~l~~---~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L 171 (331)
T 3dss_B 95 LLYTLSAVQILTLYDS---IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFV 171 (331)
T ss_dssp HHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---ccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999974 6789999999999999999999999989999999999999999999988888899999999
Q ss_pred eeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccccccccccchhccchhHHHH
Q 013798 201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL 280 (436)
Q Consensus 201 lscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~l 280 (436)
++||++||||+..|+.|||+++|||||++|.+++..+.++++++++||.+||.++|||+||++|++|+|||||++++|.+
T Consensus 172 ~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~l 251 (331)
T 3dss_B 172 LSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKI 251 (331)
T ss_dssp HTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHH
T ss_pred HHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCC
Q 013798 281 LRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDP 360 (436)
Q Consensus 281 L~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~ 360 (436)
|+.. .++|.+++++||++| |++
T Consensus 252 lg~~---------------------------------------------------------~~~~~~~~~~fil~c-Q~~ 273 (331)
T 3dss_B 252 IGRL---------------------------------------------------------HWIDREKLRSFILAC-QDE 273 (331)
T ss_dssp TTCG---------------------------------------------------------GGSCHHHHHHHHHHT-BCT
T ss_pred cCCc---------------------------------------------------------chhhHHHHHHHHHHh-cCC
Confidence 8754 236889999999998 776
Q ss_pred C-CccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccccccCCcccccccchhHHHhhhhhhhhh
Q 013798 361 R-GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAH 430 (436)
Q Consensus 361 ~-GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~ 430 (436)
+ |||+++|++.||+|||||+|++|+++++.. |.++||+||||.+.++++.
T Consensus 274 ~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~~--------------------l~~~~p~~~~~~~~~~~~~ 324 (331)
T 3dss_B 274 ETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQ--------------------IKPVSPVFCMPEEVLQRVN 324 (331)
T ss_dssp TTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTT--------------------SCCBCTTTSSBHHHHHHHT
T ss_pred CCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCC--------------------CCCCCccccCCHHHHHHhC
Confidence 5 999999999999999999999999997542 6789999999999999864
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=3.2e-45 Score=366.50 Aligned_cols=272 Identities=19% Similarity=0.314 Sum_probs=234.7
Q ss_pred hhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccc
Q 013798 92 DLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEID 171 (436)
Q Consensus 92 ~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D 171 (436)
..++++++||+++......+.....+.+.++.||+++.+|.+||. ++.++|+++++||+++|++||||.+.++.+++
T Consensus 18 l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~---l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~ 94 (331)
T 3dss_B 18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQ---LHRMNKEEILVFIKSCQHECGGVSASIGHDPH 94 (331)
T ss_dssp CCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBC
T ss_pred hhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCC---CchhhHHHHHHHHhhhcCCCCCcCCCCCCCcc
Confidence 457899999999843322233223356899999999999999995 57789999999999999999999999988999
Q ss_pred hhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccceeeee
Q 013798 172 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFR 251 (436)
Q Consensus 172 ~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~r 251 (436)
+.+||+|+.++.+++..+.++++++++||.+||++||||+..+++|+|...||||+++|.++|..+.++++++++||.++
T Consensus 95 l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~ 174 (331)
T 3dss_B 95 LLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSC 174 (331)
T ss_dssp HHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999877778899999999999999999999999999999999999999999998888999999999999
Q ss_pred cccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCC
Q 013798 252 QGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDE 331 (436)
Q Consensus 252 Q~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 331 (436)
|++||||.+++++++|++|+||++++|.+++.+.
T Consensus 175 Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~---------------------------------------------- 208 (331)
T 3dss_B 175 MNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLH---------------------------------------------- 208 (331)
T ss_dssp BCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGG----------------------------------------------
T ss_pred CcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccc----------------------------------------------
Confidence 9999999999999999999999999999887542
Q ss_pred ccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCccc--------
Q 013798 332 HCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRA-------- 403 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~~-------- 403 (436)
.++.+++.+||+.+ |+++|||+++|+|.+|+|||||++++|++++...+.+. ..+.++
T Consensus 209 -----------~~~~~~~~~wL~~~-Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~--~~~~~fil~cQ~~~ 274 (331)
T 3dss_B 209 -----------QVNSDLLGWWLCER-QLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDR--EKLRSFILACQDEE 274 (331)
T ss_dssp -----------GSCHHHHHHHHHTT-BCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCH--HHHHHHHHHTBCTT
T ss_pred -----------hhhHHHHHHHHHHh-CCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhH--HHHHHHHHHhcCCC
Confidence 24568999998886 99999999999999999999999999999987653221 111111
Q ss_pred ---cccCCcccccccchhHHHhhhhh
Q 013798 404 ---VLGPYSNVLEPVHPVFNIVLDRY 426 (436)
Q Consensus 404 ---~~~~~~~~~~~~~p~~~i~~~~~ 426 (436)
+.+.|++..+++|++|++..-++
T Consensus 275 ~GGf~~~pg~~~d~~hT~~~l~~Ls~ 300 (331)
T 3dss_B 275 TGGFADRPGDMVDPFHTLFGIAGLSL 300 (331)
T ss_dssp TCCBCSSTTSCCBHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHHH
Confidence 23458888999999999976554
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=7.5e-44 Score=367.74 Aligned_cols=275 Identities=17% Similarity=0.219 Sum_probs=234.1
Q ss_pred hhhhcchhHhhhcc-CCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcc
Q 013798 91 ADLEDRTIEFLSRC-QDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGE 169 (436)
Q Consensus 91 ~~~~~~~i~~l~~~-q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge 169 (436)
...++++++||++| |+.+|||+..... +.+.+|+++.+|.+||.. ++..+++++++||.++|++||||.+.++++
T Consensus 72 ~l~~~~hi~~l~~~lq~~~gg~~a~D~~--r~~l~y~~l~aL~lLg~~--~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~ 147 (437)
T 2h6f_B 72 VLQREKHFHYLKRGLRQLTDAYECLDAS--RPWLCYWILHSLELLDEP--IPQIVATDVCQFLELCQSPEGGFGGGPGQY 147 (437)
T ss_dssp CCCHHHHHHHHHHHTTEECGGGGGGTTC--HHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHBCTTSSBBSSTTCC
T ss_pred cccHHHHHHHHHHcCCCCCCCcccccCC--CccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCCCCCcCCccCCC
Confidence 34578999999999 8999999987654 456689999999999953 445567889999999999999999988888
Q ss_pred cchhhhhhHHHHHHHHhhc---cHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcccccc
Q 013798 170 IDVRACYTAISVASILNIL---DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246 (436)
Q Consensus 170 ~D~r~tY~a~~~~~LL~~~---~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~l~~ 246 (436)
.++..||+++.++.++|.. +.++++++++||++||++||||+..+++|+|...||||+++|.++|..+...++++++
T Consensus 148 ~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~ 227 (437)
T 2h6f_B 148 PHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAE 227 (437)
T ss_dssp BCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHH
T ss_pred cchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999853 4467899999999999999999999999999999999999999999987778899999
Q ss_pred eeeeecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCCCCCC
Q 013798 247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEIS 326 (436)
Q Consensus 247 wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 326 (436)
||.++|++||||+++|+++++++|+||++++|.+++...
T Consensus 228 ~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~----------------------------------------- 266 (437)
T 2h6f_B 228 WIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRER----------------------------------------- 266 (437)
T ss_dssp HHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGG-----------------------------------------
T ss_pred HHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCC-----------------------------------------
Confidence 999999999999999999999999999999999987642
Q ss_pred CCCCCccccccccccchhhHHHHHHhhhhhccC-CCCccCCCCCCCCCcceeeeeccCCchhhccccC--C---------
Q 013798 327 SQGDEHCHFQHREREPLFHSIALQRYLLLCSQD-PRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK--D--------- 394 (436)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~-~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~--~--------- 394 (436)
..+.+++.+||+.+ |. ++|||++||+|.+|+|||||++++|+|++...+. .
T Consensus 267 ----------------~~~~~rl~~wL~~r-Q~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l 329 (437)
T 2h6f_B 267 ----------------SLNLKSLLQWVTSR-QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWM 329 (437)
T ss_dssp ----------------GSCHHHHHHHHHHT-BCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCS
T ss_pred ----------------cccHHHHHHHHHhc-CCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhccccccccccccc
Confidence 24668999999987 77 6899999999999999999999999999864210 0
Q ss_pred CCCCCCcccc-----------ccCCcccccccchhHHHhhhhhh
Q 013798 395 EDSSPLPRAV-----------LGPYSNVLEPVHPVFNIVLDRYH 427 (436)
Q Consensus 395 ~~~~~~~~~~-----------~~~~~~~~~~~~p~~~i~~~~~~ 427 (436)
.+...+.++| .+.|++..+++|++|++..-++.
T Consensus 330 ~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~yHT~y~L~gLsl~ 373 (437)
T 2h6f_B 330 FHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIA 373 (437)
T ss_dssp SCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCccCCCCCCCCHHHHHHHHHHHHHh
Confidence 1112222232 23577888999999999876654
No 8
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=1.7e-38 Score=329.33 Aligned_cols=283 Identities=18% Similarity=0.160 Sum_probs=231.2
Q ss_pred hhhhhcchhHhhhccCCC-CCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCcccccc--
Q 013798 90 DADLEDRTIEFLSRCQDP-NGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD-- 166 (436)
Q Consensus 90 ~~~~~~~~i~~l~~~q~~-dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~-- 166 (436)
++..+++.++|+.+|-.. ...|. ..+.++.+..|+++.+|.+||.. ++..+++++++||.++|+++|||.+.+
T Consensus 59 ~~L~~~~Hi~yl~~~L~~LP~~y~--~~Dasr~wl~Yw~l~aL~LLg~~--ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~ 134 (520)
T 3q7a_B 59 SGLRKQEHTQFLASSFFQLPGKFV--SLDASRPWLVFWTVHSLDLLGVA--LDQGTKDRVVSTLLHFLSPKGGFGGGPAN 134 (520)
T ss_dssp CCCCHHHHHHHHHHHHSCBCGGGG--GGGGGHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHTTBCTTSSBCSSCTT
T ss_pred cccCHHHHHHHHHHHhhhCChhhh--hcccchHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 345688999999998532 12232 22467899999999999999953 566678899999999999999999988
Q ss_pred CcccchhhhhhHHHHHHHHhhc------cHHH--hhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhcccc
Q 013798 167 AGEIDVRACYTAISVASILNIL------DDEL--LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 238 (436)
Q Consensus 167 ~ge~D~r~tY~a~~~~~LL~~~------~~~~--~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~ 238 (436)
...+++..||+|+.++.+++.. +.++ ++++++||.+||.+||||...+++|.+...||||+++|.++|..+.
T Consensus 135 ~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~ 214 (520)
T 3q7a_B 135 SQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITP 214 (520)
T ss_dssp TSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCH
T ss_pred CCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCCh
Confidence 7788999999999999999753 3567 8999999999999999999988999999999999999999999877
Q ss_pred CCcccccceeeeeccccccccc-----------------------ccccccccchhccchhHHHHHHHHHhhhcCCCCcc
Q 013798 239 LDLDALIGWVVFRQGVEGGFQG-----------------------RTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPV 295 (436)
Q Consensus 239 ~~~~~l~~wL~~rQ~~~GGF~g-----------------------r~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~ 295 (436)
.+++++++||.++|++||||.. .|+.++++.|+||++|+|+||+.+.....
T Consensus 215 ~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~------ 288 (520)
T 3q7a_B 215 ELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSF------ 288 (520)
T ss_dssp HHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTC------
T ss_pred HHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhcccccccc------
Confidence 8899999999999999999999 67999999999999999999997531100
Q ss_pred ccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccC---CCCccCCCCCCCC
Q 013798 296 DQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD---PRGGLRDKLRKPR 372 (436)
Q Consensus 296 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~---~~GGf~~~P~k~~ 372 (436)
...+|.++|.+|+.. ||. +.|||+|||||++
T Consensus 289 ---------------------------------------------~~~~d~~~l~~WL~~-RQ~~~~e~GGF~GR~NKlv 322 (520)
T 3q7a_B 289 ---------------------------------------------PLSIDANAALRWTVL-QQGEPIEGGGFRGRTNKLV 322 (520)
T ss_dssp ---------------------------------------------SCCCCHHHHHHHHHH-TBCCGGGTTCBBSSTTSCB
T ss_pred ---------------------------------------------ccccCHHHHHHHHHH-hCCcccCCCcccCCCCCCC
Confidence 023688999999877 586 3699999999999
Q ss_pred CcceeeeeccCCchhhcc-----------------------ccCC-------CCCCCCcccc--------------ccCC
Q 013798 373 DYYHTCYCLSGLSICQHS-----------------------WLKD-------EDSSPLPRAV--------------LGPY 408 (436)
Q Consensus 373 D~~hT~~~la~Lsl~~~~-----------------------~~~~-------~~~~~~~~~~--------------~~~~ 408 (436)
|.|||||++++|+|++.. .|.+ .+...+.++| .++|
T Consensus 323 D~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkP 402 (520)
T 3q7a_B 323 DGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKP 402 (520)
T ss_dssp CTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSST
T ss_pred chhhhhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCC
Confidence 999999999999999864 0100 0111222222 2358
Q ss_pred cccccccchhHHHhhhhhhh
Q 013798 409 SNVLEPVHPVFNIVLDRYHE 428 (436)
Q Consensus 409 ~~~~~~~~p~~~i~~~~~~~ 428 (436)
++..+++|++|++..-++..
T Consensus 403 g~~pD~yHT~y~LaGLSl~q 422 (520)
T 3q7a_B 403 GKRPDQYHTCNNLSGLSIAQ 422 (520)
T ss_dssp TSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHhC
Confidence 88999999999999776653
No 9
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=1.5e-37 Score=315.11 Aligned_cols=272 Identities=17% Similarity=0.158 Sum_probs=220.7
Q ss_pred hhhcchhHhhhccCCC-CCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCC----Ccccccc
Q 013798 92 DLEDRTIEFLSRCQDP-NGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPS----GAFRMHD 166 (436)
Q Consensus 92 ~~~~~~i~~l~~~q~~-dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~d----GgF~~~~ 166 (436)
..+++.++|+.+|-.. ...|- ..+.++++..|++|.+|.+||... +...+|+++++||.++|.++ |||.+.+
T Consensus 4 l~~~kHiky~~~~L~~Lp~~~~--s~D~~R~~l~Yw~l~~L~lLg~~~-~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~ 80 (390)
T 3dra_B 4 LLINKHEKFFNRCLIGLPSTAQ--SEDSNKLAIIYFCLHGLQLIQKFQ-FTNQELIYYRNFIINQFMIENNQIISFRSTH 80 (390)
T ss_dssp CCHHHHHHHHHHHHHCCCGGGG--GGTTCHHHHHHHHHHHHHHTTCCC-CCHHHHHHHHHHHHHHHEEECSSCEEECSSG
T ss_pred ccHHHHHHHHHHHHHhCCcchh--hcchhhHHHHHHHHHHHHHhCCCc-cchHHHHHHHHHHHHHhccccCCCCCcCCCc
Confidence 3578999999987432 22232 224689999999999999999631 24456788999999997653 9999875
Q ss_pred -----C---cccchhhhhhHHHHHHHHhhc--cHHHhhhccCeeeeece---e-ccccCCCC-----------CCccccC
Q 013798 167 -----A---GEIDVRACYTAISVASILNIL--DDELLQNVGNYILSCQT---Y-EGGIAGEP-----------GSEAHGG 221 (436)
Q Consensus 167 -----~---ge~D~r~tY~a~~~~~LL~~~--~~~~~~~~~~yIlscQ~---~-dGGFg~~p-----------g~esh~~ 221 (436)
+ ..+++-.||+|+.++.+|+.. +.++++++.+||.+||+ + ||||+..+ ++|.|..
T Consensus 81 ~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R 160 (390)
T 3dra_B 81 YFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLR 160 (390)
T ss_dssp GGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHH
T ss_pred cCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHH
Confidence 3 357888999999999999863 56789999999999999 6 89999654 6899999
Q ss_pred cchhhHHHHHhhhccc-------------cCCcccccceeeeecccccccccccccccccchhccchhHHHHHHHHHhhh
Q 013798 222 YTFCGLAAMILINEAD-------------RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSII 288 (436)
Q Consensus 222 ~TycAlaaL~llg~~~-------------~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~ 288 (436)
.||||++++.+|+... .+|++++++||.++|+.||||.+.|+.++++-|+||++|+|+||+.+
T Consensus 161 ~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~---- 236 (390)
T 3dra_B 161 VCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP---- 236 (390)
T ss_dssp HHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc----
Confidence 9999999999999887 68899999999999999999999999999999999999999998764
Q ss_pred cCCCCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccC---------
Q 013798 289 GESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD--------- 359 (436)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~--------- 359 (436)
+.|.++|.+|+.. ||.
T Consensus 237 ------------------------------------------------------~~d~~~l~~WL~~-RQ~~~~~~~~~~ 261 (390)
T 3dra_B 237 ------------------------------------------------------LEKLKSTKEWLIH-RQVDYPENLYPK 261 (390)
T ss_dssp ------------------------------------------------------GGGCHHHHHHHHT-TBCCCCTTTCC-
T ss_pred ------------------------------------------------------cccHHHHHHHHHH-cCcccccccccc
Confidence 1356889999776 587
Q ss_pred -------------------CCCccCCCCCCCCCcceeeeeccCCchhhc--cccCCCCCCCCccc------------ccc
Q 013798 360 -------------------PRGGLRDKLRKPRDYYHTCYCLSGLSICQH--SWLKDEDSSPLPRA------------VLG 406 (436)
Q Consensus 360 -------------------~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~--~~~~~~~~~~~~~~------------~~~ 406 (436)
++|||++||+|++|+|||||++++|.|++. ..+.+ ..++.++ +.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d--~~~l~~yiL~c~Q~~~~GGf~d 339 (390)
T 3dra_B 262 DGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVD--LNKAEDYLLNKTQNQLFGGFGR 339 (390)
T ss_dssp -----------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGSC--HHHHHHHHHHTTBCTTTCSBCS
T ss_pred ccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccccccC--HHHHHHHHHHhccCCCCCCcCC
Confidence 469999999999999999999999999984 22221 1222222 234
Q ss_pred CCcccccccchhHHHhhhhhh
Q 013798 407 PYSNVLEPVHPVFNIVLDRYH 427 (436)
Q Consensus 407 ~~~~~~~~~~p~~~i~~~~~~ 427 (436)
.|++..+++|++|+|..-++-
T Consensus 340 ~Pg~~pD~yHT~~gLagLsl~ 360 (390)
T 3dra_B 340 DPDSTPDPMHSYLALASLSLW 360 (390)
T ss_dssp STTSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHc
Confidence 578889999999999876654
No 10
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=4.2e-37 Score=311.91 Aligned_cols=271 Identities=16% Similarity=0.230 Sum_probs=224.4
Q ss_pred hhcchhHhhhccCCC-CCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcC---------CCCcc
Q 013798 93 LEDRTIEFLSRCQDP-NGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD---------PSGAF 162 (436)
Q Consensus 93 ~~~~~i~~l~~~q~~-dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~---------~dGgF 162 (436)
.+++.++|+.++.+. .+.|.. .+.+.++.+|++|.+|.+||. ++.++++++++||.++|+ ++|||
T Consensus 21 ~~~~H~~y~~~~l~~lp~~~~~--~d~~r~~~~yw~l~~L~lLg~---l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF 95 (377)
T 1n4q_B 21 LRDRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDS---LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGF 95 (377)
T ss_dssp CHHHHHHHHHHHHHEECGGGGG--GGGGHHHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEE
T ss_pred CHHHHHHHHHHHhhcCCccccc--cccchHHHHHHHHHHHHHhCC---CCccCHHHHHHHHHHhcCCccccccCCCCCcc
Confidence 578999999998754 334443 346789999999999999995 456778999999999999 68999
Q ss_pred ccccCc-----------------ccchhhhhhHHHHHHHHhh-ccHHHhhhccCeeeeeceeccccCCC-CCCccccCcc
Q 013798 163 RMHDAG-----------------EIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGE-PGSEAHGGYT 223 (436)
Q Consensus 163 ~~~~~g-----------------e~D~r~tY~a~~~~~LL~~-~~~~~~~~~~~yIlscQ~~dGGFg~~-pg~esh~~~T 223 (436)
.+.+.. .+.+-.||+++.++.+++. .+.++++++++||.++|.+||+|... .++|.+...|
T Consensus 96 ~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~Dirft 175 (377)
T 1n4q_B 96 RGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFV 175 (377)
T ss_dssp CSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHH
T ss_pred CCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHH
Confidence 876431 2557779999999999873 45577899999999999999999987 6789999999
Q ss_pred hhhHHHHHhhhccccCCcccccceeeeecccccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCccccc
Q 013798 224 FCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECS 303 (436)
Q Consensus 224 ycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~ 303 (436)
|||+++|.++|..+.++++++++||.++|++||||...|+.++++-|+||++++|.+++......
T Consensus 176 Y~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~--------------- 240 (377)
T 1n4q_B 176 YCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF--------------- 240 (377)
T ss_dssp HHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHS---------------
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCccccc---------------
Confidence 99999999999988889999999999999999999999999999999999999999998653210
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccC
Q 013798 304 IDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSG 383 (436)
Q Consensus 304 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~ 383 (436)
+..+.+++.+||.. +| +|||++||+|++|+|||||++++
T Consensus 241 --------------------------------------~~~~~~rli~wL~~-rQ--~gGf~GR~nK~~D~CYSfWv~~~ 279 (377)
T 1n4q_B 241 --------------------------------------SEKELNRIKRWCIM-RQ--QNGYHGRPNKPVDTCYSFWVGAT 279 (377)
T ss_dssp --------------------------------------CHHHHHHHHHHHHT-TB--SSSBCSSTTSCCCTTHHHHHHHH
T ss_pred --------------------------------------chhhHHHHHHHHHh-cC--CCCcCCCCCcchhHHHHHHHHHH
Confidence 11267899999776 58 89999999999999999999999
Q ss_pred CchhhccccCCCCCCCCccc-----------cccCCcccccccchhHHHhhhhh
Q 013798 384 LSICQHSWLKDEDSSPLPRA-----------VLGPYSNVLEPVHPVFNIVLDRY 426 (436)
Q Consensus 384 Lsl~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~p~~~i~~~~~ 426 (436)
|.+++...+.+ ...+.++ +.+.|++..+++|++|+|..-++
T Consensus 280 l~iL~~~~~~d--~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLsl 331 (377)
T 1n4q_B 280 LKLLKIFQYTN--FEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSL 331 (377)
T ss_dssp HHHTTCGGGSC--HHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHH
T ss_pred HHHhCCccccC--HHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHh
Confidence 99998765432 1112222 22457788899999999987654
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.82 E-value=9.1e-21 Score=204.77 Aligned_cols=222 Identities=17% Similarity=0.155 Sum_probs=169.2
Q ss_pred hhhhHHHHHHhhhhcCCccc--------------eec--CCCcchhHHHHHHHHhhccc---chhhhhcchhHhhhccCC
Q 013798 46 RKNHVEYLLRGLQQLGPSFC--------------SLD--ANRPWICYWILHSMALLGEF---VDADLEDRTIEFLSRCQD 106 (436)
Q Consensus 46 r~~h~~yl~~~l~~lp~~~~--------------~~d--~~r~~~~yw~l~~L~lL~~~---~~~~~~~~~i~~l~~~q~ 106 (436)
.+|..+||.+.....++.+. ..+ ....|.+.+++.+|..++.. ..++..+++++||+++|+
T Consensus 333 ~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~ 412 (631)
T 2sqc_A 333 LVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQS 412 (631)
T ss_dssp HHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcC
Confidence 45678899886543333221 111 13568899999999999863 234567899999999999
Q ss_pred CCCCCCCCCC-------------------CCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccC
Q 013798 107 PNGGYGGGPG-------------------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA 167 (436)
Q Consensus 107 ~dGGF~~~~~-------------------~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ 167 (436)
+||||+..+. +.+++..|..++.+|..++.+ ......+++++||.+.|++||||.+.+
T Consensus 413 ~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~--~~~~~i~rai~~L~~~Q~~DGsw~g~w- 489 (631)
T 2sqc_A 413 SNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYD--DAWKVIRRAVEYLKREQKPDGSWFGRW- 489 (631)
T ss_dssp TTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCC--TTSHHHHHHHHHHHHHCCTTSCCCCSS-
T ss_pred CCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHhcCCCCCCCCCC-
Confidence 9999975321 127888999999999998853 222345789999999999999997654
Q ss_pred cccchhhhhhHHHHHHHHhhcc----HHHhhhccCeeeeeceeccccCCCC----------CCccccCcchhhHHHHHhh
Q 013798 168 GEIDVRACYTAISVASILNILD----DELLQNVGNYILSCQTYEGGIAGEP----------GSEAHGGYTFCGLAAMILI 233 (436)
Q Consensus 168 ge~D~r~tY~a~~~~~LL~~~~----~~~~~~~~~yIlscQ~~dGGFg~~p----------g~esh~~~TycAlaaL~ll 233 (436)
+++++|+++.++..|.... ...++++++||++||++||||+..+ +.++|+..|++||.+|..+
T Consensus 490 ---g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~a 566 (631)
T 2sqc_A 490 ---GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAG 566 (631)
T ss_dssp ---BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHT
T ss_pred ---CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 3567888777666554322 4678999999999999999998653 4678999999999999999
Q ss_pred hccccCCcccccceeeeeccccccccccccc---ccccchhcc
Q 013798 234 NEADRLDLDALIGWVVFRQGVEGGFQGRTNK---LVDGCYSFW 273 (436)
Q Consensus 234 g~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k---~~D~cYsfw 273 (436)
|..+...++++++||.++|.++|||...... .+.+||--|
T Consensus 567 g~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y 609 (631)
T 2sqc_A 567 GRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGY 609 (631)
T ss_dssp TCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEE
T ss_pred CCCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeec
Confidence 9876556789999999999999999877653 457888643
No 12
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.76 E-value=2e-19 Score=194.25 Aligned_cols=211 Identities=15% Similarity=0.107 Sum_probs=144.5
Q ss_pred CCcchhHHHHHHHHhhcccchhhhhcchhHhhhccCCCC-------------CCCCC--CCCCCchhhHHHHHHHHHHhc
Q 013798 70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPN-------------GGYGG--GPGQMPHLATTYAAVNALISL 134 (436)
Q Consensus 70 ~r~~~~yw~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~d-------------GGF~~--~~~~~sh~~~Ty~Al~~L~~L 134 (436)
+..|-+.|++.+|..+|.+.+...++++++||.++|..+ |||+. .+...|++..|..++.+|..+
T Consensus 309 s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~ 388 (631)
T 2sqc_A 309 SPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTL 388 (631)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHc
Confidence 577899999999999997544557889999999988642 44432 233468899999999999998
Q ss_pred cCCCc-cccccchhHHHHHHhhcCCCCccccccCc----------------c---cchhhhhhHHHHHHHHhhc-cHHHh
Q 013798 135 GGEKS-LPSINRSKVYTFLKCMKDPSGAFRMHDAG----------------E---IDVRACYTAISVASILNIL-DDELL 193 (436)
Q Consensus 135 g~~~~-l~~id~~~~~~~L~~~Q~~dGgF~~~~~g----------------e---~D~r~tY~a~~~~~LL~~~-~~~~~ 193 (436)
+.... ...-..+++++||.++|++||||...+.. . .++-.|..++.++..++.. ....+
T Consensus 389 ~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i 468 (631)
T 2sqc_A 389 RLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVI 468 (631)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHH
T ss_pred CCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHH
Confidence 85210 01112357999999999999999642110 0 2222233333344334432 23678
Q ss_pred hhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccc-cCCcccccceeeeeccccccccccc----------
Q 013798 194 QNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIGWVVFRQGVEGGFQGRT---------- 262 (436)
Q Consensus 194 ~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~-~~~~~~l~~wL~~rQ~~~GGF~gr~---------- 262 (436)
+++++||+++|++||||.+..+. .+...|..++.+|..+|... ...++++++||.++|.+||||...+
T Consensus 469 ~rai~~L~~~Q~~DGsw~g~wg~-~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~ 547 (631)
T 2sqc_A 469 RRAVEYLKREQKPDGSWFGRWGV-NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAG 547 (631)
T ss_dssp HHHHHHHHHHCCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCCC-CchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCC
Confidence 99999999999999999654432 34445666677777776532 3457899999999999999996432
Q ss_pred ccccccchhccchhHHHHH
Q 013798 263 NKLVDGCYSFWQGGVFALL 281 (436)
Q Consensus 263 ~k~~D~cYsfw~~~~l~lL 281 (436)
....|+..++|++.+|..+
T Consensus 548 ~~~s~v~~Ta~ALlaL~~a 566 (631)
T 2sqc_A 548 KGASTPSQTAWALMALIAG 566 (631)
T ss_dssp CSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 2346777788877776543
No 13
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.75 E-value=3.6e-19 Score=194.87 Aligned_cols=209 Identities=18% Similarity=0.219 Sum_probs=145.4
Q ss_pred CCcchhHHHHHHHHhhcccch---hhhhcchhHhhhccCCCC--------------CCCCCCCC--CCchhhHHHHHHHH
Q 013798 70 NRPWICYWILHSMALLGEFVD---ADLEDRTIEFLSRCQDPN--------------GGYGGGPG--QMPHLATTYAAVNA 130 (436)
Q Consensus 70 ~r~~~~yw~l~~L~lL~~~~~---~~~~~~~i~~l~~~q~~d--------------GGF~~~~~--~~sh~~~Ty~Al~~ 130 (436)
+..|-+-|++.+|.-.|..-+ ....+++++||.++|..+ |||+.... ..+++..|..++.+
T Consensus 384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~a 463 (732)
T 1w6k_A 384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKA 463 (732)
T ss_dssp CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHH
Confidence 567888888888877775221 235678999999999765 88876543 35899999999999
Q ss_pred HHhccCCCc-c-cccc---chhHHHHHHhhcCCCCcccccc----------------Ccccchh--hhhh---HHHHHHH
Q 013798 131 LISLGGEKS-L-PSIN---RSKVYTFLKCMKDPSGAFRMHD----------------AGEIDVR--ACYT---AISVASI 184 (436)
Q Consensus 131 L~~Lg~~~~-l-~~id---~~~~~~~L~~~Q~~dGgF~~~~----------------~ge~D~r--~tY~---a~~~~~L 184 (436)
|..++.... . ..++ .+++++||.++|++||||.... .+...+. .+++ ++.++.+
T Consensus 464 L~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~ 543 (732)
T 1w6k_A 464 VLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKY 543 (732)
T ss_dssp HHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHH
Confidence 988753100 0 1122 3678999999999999995311 1111222 2223 3333444
Q ss_pred Hhhc--------cHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhcccc-----CCcccccceeeee
Q 013798 185 LNIL--------DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR-----LDLDALIGWVVFR 251 (436)
Q Consensus 185 L~~~--------~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~-----~~~~~l~~wL~~r 251 (436)
++.. ....++++++||+++|++||||+...+. .+...|++++.+|..+|.... ..++++++||.++
T Consensus 544 ~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~ 622 (732)
T 1w6k_A 544 FHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSR 622 (732)
T ss_dssp HHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTT
T ss_pred hccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCC-ccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHh
Confidence 4421 1356899999999999999999876553 344578899999999997532 2478899999999
Q ss_pred ccccccccccc----------ccccccchhccchhHHH
Q 013798 252 QGVEGGFQGRT----------NKLVDGCYSFWQGGVFA 279 (436)
Q Consensus 252 Q~~~GGF~gr~----------~k~~D~cYsfw~~~~l~ 279 (436)
|..||||.... .+..|++.+.|++-+|.
T Consensus 623 Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl 660 (732)
T 1w6k_A 623 QMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLM 660 (732)
T ss_dssp CCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999998643 34567777777765543
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.73 E-value=2.2e-18 Score=188.67 Aligned_cols=224 Identities=13% Similarity=0.129 Sum_probs=160.9
Q ss_pred hhhhHHHHHHhhhhc-------------CCcccee--cC--CCcchhHHHHHHHHhhcc-------cchhhhhcchhHhh
Q 013798 46 RKNHVEYLLRGLQQL-------------GPSFCSL--DA--NRPWICYWILHSMALLGE-------FVDADLEDRTIEFL 101 (436)
Q Consensus 46 r~~h~~yl~~~l~~l-------------p~~~~~~--d~--~r~~~~yw~l~~L~lL~~-------~~~~~~~~~~i~~l 101 (436)
.++-++||.++.... +++|.-. +. ...+.+-+++.+|..++. .+.++..+++++||
T Consensus 411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL 490 (732)
T 1w6k_A 411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL 490 (732)
T ss_dssp HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 346778888765322 1433222 21 245677888888887753 24455678999999
Q ss_pred hccCCCCCCCCCCCC---------------------CCchhhHHHHHHHHHHhccCC-Ccc--c--cccchhHHHHHHhh
Q 013798 102 SRCQDPNGGYGGGPG---------------------QMPHLATTYAAVNALISLGGE-KSL--P--SINRSKVYTFLKCM 155 (436)
Q Consensus 102 ~~~q~~dGGF~~~~~---------------------~~sh~~~Ty~Al~~L~~Lg~~-~~l--~--~id~~~~~~~L~~~ 155 (436)
+++|++||||+.... ..+++..|.+++.+|..++.. ... + ....+++++||.+.
T Consensus 491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~ 570 (732)
T 1w6k_A 491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ 570 (732)
T ss_dssp HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence 999999999964211 235778899999999887631 001 1 12246899999999
Q ss_pred cCCCCccccccCcccchhhhhhHHHHHHHHhhcc-H----HHhhhccCeeeeeceeccccCCC----------CCCcccc
Q 013798 156 KDPSGAFRMHDAGEIDVRACYTAISVASILNILD-D----ELLQNVGNYILSCQTYEGGIAGE----------PGSEAHG 220 (436)
Q Consensus 156 Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~-~----~~~~~~~~yIlscQ~~dGGFg~~----------pg~esh~ 220 (436)
|++||||.+.++ ..++..+.+++.++.++|... . ..++++++||+++|+.||||+.. ++.++++
T Consensus 571 Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v 649 (732)
T 1w6k_A 571 QRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI 649 (732)
T ss_dssp SCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred cCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence 999999987653 334444555555555566532 1 57899999999999999999964 3567899
Q ss_pred CcchhhHHHHHhhhccccCCcccccceeeeecccccccccccc--cccccch
Q 013798 221 GYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTN--KLVDGCY 270 (436)
Q Consensus 221 ~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~--k~~D~cY 270 (436)
..|.+||.+|..++..+...++++++||.++|..+|||.-++. ....+||
T Consensus 650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~ 701 (732)
T 1w6k_A 650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA 701 (732)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhh
Confidence 9999999999888877656688999999999999999996553 2356676
No 15
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.41 E-value=7.9e-14 Score=137.78 Aligned_cols=163 Identities=13% Similarity=0.188 Sum_probs=114.8
Q ss_pred hcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccc---hhHHHHHHh-hcCCCCccccccC--
Q 013798 94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINR---SKVYTFLKC-MKDPSGAFRMHDA-- 167 (436)
Q Consensus 94 ~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~---~~~~~~L~~-~Q~~dGgF~~~~~-- 167 (436)
.++.+++++++|++||||+..++..++.+.|-+++.+|..+... ..++. +++++||.+ .|++||+|.+...
T Consensus 56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~---~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~ 132 (310)
T 2wy7_A 56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNL---IAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVI 132 (310)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCS
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcCCCCccccCCCcc
Confidence 34556669999999999999888889999999999999988742 23432 478999996 9999999986532
Q ss_pred -----ccc----chhhhhhHHHHHHHHhh-------c--cHHHhhhccCeeeeecee-----------------------
Q 013798 168 -----GEI----DVRACYTAISVASILNI-------L--DDELLQNVGNYILSCQTY----------------------- 206 (436)
Q Consensus 168 -----ge~----D~r~tY~a~~~~~LL~~-------~--~~~~~~~~~~yIlscQ~~----------------------- 206 (436)
|+. +.+.++++.+..+|+.. . ....++++++||.++|+.
T Consensus 133 ~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~ 212 (310)
T 2wy7_A 133 HQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGP 212 (310)
T ss_dssp CGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHH
T ss_pred CHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHH
Confidence 111 23345666665555432 1 135678999999999774
Q ss_pred ----------ccccCCCCCCc-cccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccc
Q 013798 207 ----------EGGIAGEPGSE-AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 207 ----------dGGFg~~pg~e-sh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
+|++-..++.. ..+..|.+||.+|...+. ...++++++||.++|..+|||...
T Consensus 213 ~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT 276 (310)
T 2wy7_A 213 LLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGST 276 (310)
T ss_dssp HHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTCH
T ss_pred HHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc
Confidence 23343333321 134456677777666654 456889999999999999999864
No 16
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.41 E-value=1.3e-13 Score=133.91 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=115.1
Q ss_pred hcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccc---hhHHHHHHh-hcCCCCccccccC--
Q 013798 94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINR---SKVYTFLKC-MKDPSGAFRMHDA-- 167 (436)
Q Consensus 94 ~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~---~~~~~~L~~-~Q~~dGgF~~~~~-- 167 (436)
.++.+++++++|++||||+..++..++.+.|-+++.+|..+... ..++. +++++||.+ .|++||+|.....
T Consensus 40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~---~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~ 116 (277)
T 1qqf_A 40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANL---IAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVI 116 (277)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCS
T ss_pred HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhccCCCCCccCCcccc
Confidence 45556679999999999999888899999999999999988742 23432 478999996 9999999986531
Q ss_pred -----ccc----chhhhhhHHHHHHHHhh-------c--cHHHhhhccCeeeeecee-----------------------
Q 013798 168 -----GEI----DVRACYTAISVASILNI-------L--DDELLQNVGNYILSCQTY----------------------- 206 (436)
Q Consensus 168 -----ge~----D~r~tY~a~~~~~LL~~-------~--~~~~~~~~~~yIlscQ~~----------------------- 206 (436)
|+. +.+.++++.+..+|+.. . ....++++++||.++++.
T Consensus 117 ~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~ 196 (277)
T 1qqf_A 117 HQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEP 196 (277)
T ss_dssp CGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTT
T ss_pred chhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHH
Confidence 111 22345566665555432 1 135678999999998764
Q ss_pred ----------ccccCCCCCCc-cccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccc
Q 013798 207 ----------EGGIAGEPGSE-AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 207 ----------dGGFg~~pg~e-sh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
+|++-..|+.. ..+..|.+||.+|...+. ....+++++||.++|..+|||..-
T Consensus 197 ~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT 260 (277)
T 1qqf_A 197 YLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGST 260 (277)
T ss_dssp HHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTCH
T ss_pred HHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc
Confidence 34444344421 134456666666666554 456789999999999999999864
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.91 E-value=4.3e-10 Score=113.59 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=57.4
Q ss_pred hhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccc
Q 013798 93 LEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH 165 (436)
Q Consensus 93 ~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~ 165 (436)
..++.+++|+++|++||||+..++..++.+.|.+++.+|..++.....+.--.+++++||.+.|++||+|...
T Consensus 92 ~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 92 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred HHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccc
Confidence 4567889999999999999987777788899999999998887421111112357899999999999999864
No 18
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.77 E-value=2.2e-09 Score=124.76 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=108.8
Q ss_pred cchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCcccccc---chhHHHHHHhhcCCCCccccccC----
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSIN---RSKVYTFLKCMKDPSGAFRMHDA---- 167 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id---~~~~~~~L~~~Q~~dGgF~~~~~---- 167 (436)
++.+++++++|++||||+..+++.++.+.|.+++.+|..+... ...++ .+++++||.+.|++||+|.+...
T Consensus 875 ~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~--~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~ 952 (1325)
T 2pn5_A 875 RQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKY--ISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHK 952 (1325)
T ss_dssp HHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTT--CSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCH
T ss_pred HHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhh--EEcCCHHHHHHHHHHHHhhhccCCCccccccccCh
Confidence 3445567999999999999999999999999999999887532 11133 35789999999999999976521
Q ss_pred ---cccchhhhhhHHHHHHHHhh--cc---HHHhhhccCeeeeecee-ccccCCC-----------C-------------
Q 013798 168 ---GEIDVRACYTAISVASILNI--LD---DELLQNVGNYILSCQTY-EGGIAGE-----------P------------- 214 (436)
Q Consensus 168 ---ge~D~r~tY~a~~~~~LL~~--~~---~~~~~~~~~yIlscQ~~-dGGFg~~-----------p------------- 214 (436)
|..+.+.+|.+.+..+|+.. .. ...++++++||.++++. +++++.. +
T Consensus 953 ~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~ 1032 (1325)
T 2pn5_A 953 EMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMS 1032 (1325)
T ss_dssp HHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTC
T ss_pred hhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhh
Confidence 33344456666554555532 11 23567888898887765 6655321 0
Q ss_pred ---C--------CccccCcchhhHHHHHhhhccccCCcccccceeeeeccccccccc
Q 013798 215 ---G--------SEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 260 (436)
Q Consensus 215 ---g--------~esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~g 260 (436)
. ..+....|.+||.+|...+. .....++++||.++|..+|||..
T Consensus 1033 ~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s 1087 (1325)
T 2pn5_A 1033 FIDADKNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS 1087 (1325)
T ss_dssp EEETTTTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS
T ss_pred hhccCCCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc
Confidence 0 01233345566655555543 23457889999988888899874
No 19
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.75 E-value=8.3e-09 Score=99.92 Aligned_cols=177 Identities=15% Similarity=0.201 Sum_probs=112.9
Q ss_pred hhhHHHHHHhh------hhcCCccceec--CCCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhc-cCCCCCCCCCCC
Q 013798 47 KNHVEYLLRGL------QQLGPSFCSLD--ANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGGP 115 (436)
Q Consensus 47 ~~h~~yl~~~l------~~lp~~~~~~d--~~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~-~q~~dGGF~~~~ 115 (436)
++-++++.+.. +...++|...+ ...+|++-+++.+|..... .+++...+++++||.+ .|++||+|.+..
T Consensus 34 ~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~ 113 (277)
T 1qqf_A 34 QEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDG 113 (277)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCc
Confidence 34555544433 34567776544 3567999999999988774 4666778899999995 999999997643
Q ss_pred CC-------------CchhhHHHHHHHHHHhccCC--Cccc--cccchhHHHHHHhhcCC--------------------
Q 013798 116 GQ-------------MPHLATTYAAVNALISLGGE--KSLP--SINRSKVYTFLKCMKDP-------------------- 158 (436)
Q Consensus 116 ~~-------------~sh~~~Ty~Al~~L~~Lg~~--~~l~--~id~~~~~~~L~~~Q~~-------------------- 158 (436)
.. ++.+..|.+++.+|...+.. ..+. ....+++++||.+.+++
T Consensus 114 ~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~ 193 (277)
T 1qqf_A 114 PVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKL 193 (277)
T ss_dssp CCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCC
T ss_pred cccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCCh
Confidence 21 23466788888888665320 0011 11235788999887653
Q ss_pred -------------CCccccccCcc-cchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcch
Q 013798 159 -------------SGAFRMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTF 224 (436)
Q Consensus 159 -------------dGgF~~~~~ge-~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~Ty 224 (436)
+|.|...+++. .++. -+++++++++...+....+++++||.+.|+++|||+.. -.|.
T Consensus 194 ~~~~l~~l~~~~~~~~~w~~~~~~~~~ve--~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~sT-------q~T~ 264 (277)
T 1qqf_A 194 EEPYLTKFLNTAKDRNRWEEPGQQLYNVE--ATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGST-------QATF 264 (277)
T ss_dssp CTTHHHHHHHHSBTTTBCCCTTCHHHHHH--HHHHHHHHHHHTTCTTSHHHHHHHHHHCCCCTTSTTCH-------HHHH
T ss_pred HHHHHHHHHHhccCCCCCCCCCCccchhH--HHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeecc-------hHHH
Confidence 33332222211 1332 23445555554434466789999999999999999852 4677
Q ss_pred hhHHHHHh
Q 013798 225 CGLAAMIL 232 (436)
Q Consensus 225 cAlaaL~l 232 (436)
.||-||+-
T Consensus 265 ~aL~AL~~ 272 (277)
T 1qqf_A 265 MVFQALAQ 272 (277)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777754
No 20
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.65 E-value=2.2e-08 Score=98.57 Aligned_cols=169 Identities=16% Similarity=0.216 Sum_probs=108.3
Q ss_pred hhcCCccceec--CCCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhc-cCCCCCCCCCCCCC-------------Cc
Q 013798 58 QQLGPSFCSLD--ANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGGPGQ-------------MP 119 (436)
Q Consensus 58 ~~lp~~~~~~d--~~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~-~q~~dGGF~~~~~~-------------~s 119 (436)
+...++|...+ ...+|++-+++.+|..... .+++...+++++||.+ .|++||+|.+.... ++
T Consensus 67 q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~ 146 (310)
T 2wy7_A 67 RQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEK 146 (310)
T ss_dssp BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCH
T ss_pred cCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCccccccc
Confidence 34567776544 3567999999999888764 3666778899999996 99999999764321 24
Q ss_pred hhhHHHHHHHHHHhccCC--Cccc--cccchhHHHHHHhhcCC---------------------------------CCcc
Q 013798 120 HLATTYAAVNALISLGGE--KSLP--SINRSKVYTFLKCMKDP---------------------------------SGAF 162 (436)
Q Consensus 120 h~~~Ty~Al~~L~~Lg~~--~~l~--~id~~~~~~~L~~~Q~~---------------------------------dGgF 162 (436)
.+..|.+++.+|...+.. ..+. ....+++++||.+.+++ +|.|
T Consensus 147 ~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~ 226 (310)
T 2wy7_A 147 DMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNR 226 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTB
T ss_pred ccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Confidence 466788888888665320 0011 11235788899887653 2223
Q ss_pred ccccCcc-cchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhc
Q 013798 163 RMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 235 (436)
Q Consensus 163 ~~~~~ge-~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~ 235 (436)
...+++. .++. -+++++++++...+...++++++||.+.|+++|||... -.|..||-||+....
T Consensus 227 w~~~~~~~~~ve--~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~sT-------q~T~~aL~AL~~y~~ 291 (310)
T 2wy7_A 227 WEDPGKQLYNVE--ATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGST-------QATFMVFQALAQYQK 291 (310)
T ss_dssp CCCSSCHHHHHH--HHHHHHHHHHHHTCTTTHHHHHHHHHHTTCCCCSTTCH-------HHHHHHHHHHHHHHH
T ss_pred CCCCCCcccchH--HHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeecc-------HHHHHHHHHHHHHHH
Confidence 2222111 1332 23445555554434467889999999999999999642 456677777766543
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.51 E-value=7e-08 Score=108.28 Aligned_cols=159 Identities=15% Similarity=0.200 Sum_probs=103.2
Q ss_pred cchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCcccccc---chhHHHHHHh-hcCCCCccccccC---
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSIN---RSKVYTFLKC-MKDPSGAFRMHDA--- 167 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id---~~~~~~~L~~-~Q~~dGgF~~~~~--- 167 (436)
+..+++++..|++||||+..++..++.+.|-+++..|..+... ..++ .+++++||.+ .|.+||+|.....
T Consensus 302 ~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~---~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~ 378 (915)
T 2hr0_B 302 KKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNL---IAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIH 378 (915)
T ss_dssp HHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTT---SCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSS
T ss_pred HHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhc---CCCCHHHHHHHHHHHHHhhccCCCccccCccccc
Confidence 4456678899999999999888889999999999998887632 1333 3568899995 9999999975321
Q ss_pred -----c-----ccchhhhhhHHHHHHHH--hhc-------cHHHhhhccCeeeeecee----------------------
Q 013798 168 -----G-----EIDVRACYTAISVASIL--NIL-------DDELLQNVGNYILSCQTY---------------------- 206 (436)
Q Consensus 168 -----g-----e~D~r~tY~a~~~~~LL--~~~-------~~~~~~~~~~yIlscQ~~---------------------- 206 (436)
+ +.++ .+.+.+..+|+ +.. ....++++++||.+.+..
T Consensus 379 ~~m~gg~~~~~~~~~--~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~ 456 (915)
T 2hr0_B 379 QEMIGGLRNNNEKDM--ALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKG 456 (915)
T ss_dssp SCCCCSCCCCTTHHH--HHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCH
T ss_pred hhhcCCccCcccccc--ccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHH
Confidence 1 1233 33333333333 211 123456777887766443
Q ss_pred -----------ccc-cCCCCCC-ccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccc
Q 013798 207 -----------EGG-IAGEPGS-EAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 207 -----------dGG-Fg~~pg~-esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
+|. |.. ++. .++...|.+||.+|...+.. ....++++||.+.|..+|||...
T Consensus 457 ~~l~~L~~~~~~~~~w~~-~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~ST 521 (915)
T 2hr0_B 457 PLLNKFLTTAKDKNRWED-PGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGST 521 (915)
T ss_dssp HHHHHHHHTSBTTTBCCC-SSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCSH
T ss_pred HHHHHHHhhccCCCCCCC-CCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccch
Confidence 111 211 111 11344567777777776653 34678999999999989999754
No 22
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.42 E-value=9.3e-08 Score=111.83 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=107.6
Q ss_pred cchhHhhhccCCCCCCCCCCCC----CCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccc--c--
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPG----QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH--D-- 166 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~----~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~--~-- 166 (436)
++.+++++.+|++||||+..++ ..++.+.|-+++..|.........+..-.+++++||.+.|.+||+|... .
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence 4667899999999999997653 4588999999999998876421112222357899999999999999732 1
Q ss_pred ----Ccc-cchhhhhhHHHHHHHH--hhc-cHHHhhhccCeeeee-----------------------------------
Q 013798 167 ----AGE-IDVRACYTAISVASIL--NIL-DDELLQNVGNYILSC----------------------------------- 203 (436)
Q Consensus 167 ----~ge-~D~r~tY~a~~~~~LL--~~~-~~~~~~~~~~yIlsc----------------------------------- 203 (436)
+|. .++.. .|.+..+|+ +.. ....++++++||.++
T Consensus 1066 ~~m~gg~~~~~~l--TAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~~~~~~~~ 1143 (1451)
T 4acq_A 1066 NAIKGGVEDEVTL--SAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEV 1143 (1451)
T ss_dssp GGGCCSCSCHHHH--HHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhcCCCCCCccc--hHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhcccccccCChHHHHHHHHHHHhcCChhHHHHH
Confidence 111 22211 121212222 211 112344555555433
Q ss_pred -------ceeccc---cCCCCC-------------CccccCcchhhHHHHHhhhcc----ccCCcccccceeeeeccccc
Q 013798 204 -------QTYEGG---IAGEPG-------------SEAHGGYTFCGLAAMILINEA----DRLDLDALIGWVVFRQGVEG 256 (436)
Q Consensus 204 -------Q~~dGG---Fg~~pg-------------~esh~~~TycAlaaL~llg~~----~~~~~~~l~~wL~~rQ~~~G 256 (436)
...+|| |+.... ....+..|.+||.+|..++.. +.....++++||.+.|...|
T Consensus 1144 l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~G 1223 (1451)
T 4acq_A 1144 LKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQG 1223 (1451)
T ss_dssp HHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTS
T ss_pred HHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCC
Confidence 112455 332111 113455677788777766521 22346789999999999999
Q ss_pred ccccccccccccchhccchhHHHH
Q 013798 257 GFQGRTNKLVDGCYSFWQGGVFAL 280 (436)
Q Consensus 257 GF~gr~~k~~D~cYsfw~~~~l~l 280 (436)
||..-. ||.+++-+++-+..
T Consensus 1224 gf~STQ----dTv~aL~ALa~Y~~ 1243 (1451)
T 4acq_A 1224 GFSSTQ----DTVVALHALSKYGA 1243 (1451)
T ss_dssp CCSSHH----HHHHHHHHHHHHHH
T ss_pred CcccHH----HHHHHHHHHHHHHH
Confidence 998543 66555555544443
No 23
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.28 E-value=1.1e-06 Score=88.54 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=57.2
Q ss_pred hhcCCccceecC--CCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhccCCCCCCCCCCCC------------CCchh
Q 013798 58 QQLGPSFCSLDA--NRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGGPG------------QMPHL 121 (436)
Q Consensus 58 ~~lp~~~~~~d~--~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~~~~------------~~sh~ 121 (436)
+...++|...+. ...|++-+++.+|...+. .+++...+++++||.+.|++||+|.+... .++.+
T Consensus 104 Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~ 183 (367)
T 1hzf_A 104 RKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETV 183 (367)
T ss_dssp BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHH
T ss_pred cCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccc
Confidence 345677765443 567888889988887774 35566788999999999999999986421 13457
Q ss_pred hHHHHHHHHHHhcc
Q 013798 122 ATTYAAVNALISLG 135 (436)
Q Consensus 122 ~~Ty~Al~~L~~Lg 135 (436)
..|.+++.+|...+
T Consensus 184 ~lTA~vl~aL~~~g 197 (367)
T 1hzf_A 184 ALTAFVTIALHHGL 197 (367)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhhh
Confidence 77888888886654
No 24
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=97.74 E-value=6.2e-06 Score=83.38 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=91.1
Q ss_pred hcchhHhhhccCCCCCCCCCCCC--------------------------------------CCchhhHHHHHHHHHHhcc
Q 013798 94 EDRTIEFLSRCQDPNGGYGGGPG--------------------------------------QMPHLATTYAAVNALISLG 135 (436)
Q Consensus 94 ~~~~i~~l~~~q~~dGGF~~~~~--------------------------------------~~sh~~~Ty~Al~~L~~Lg 135 (436)
-.++.+.|+..|.++|||.-... ...+...|..++.+|.-+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 46788999999999999965211 1133356888888886653
Q ss_pred CC------CccccccchhHHHHHHhhcCCCCcccccc-C-cccchhhhhh---HHHHHHHH---hh--------------
Q 013798 136 GE------KSLPSINRSKVYTFLKCMKDPSGAFRMHD-A-GEIDVRACYT---AISVASIL---NI-------------- 187 (436)
Q Consensus 136 ~~------~~l~~id~~~~~~~L~~~Q~~dGgF~~~~-~-ge~D~r~tY~---a~~~~~LL---~~-------------- 187 (436)
.. +.+. --..+.++||+..|.++|||.... . +..-..-+|+ ..-++.+| +.
T Consensus 163 ~~~t~~~~~~y~-~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~ 241 (408)
T 1r76_A 163 SQLAPEEAAPYR-DAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRT 241 (408)
T ss_dssp HHSCGGGCHHHH-HHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred hhccccccHHHH-HHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 21 0010 012478999999999999996432 1 1100000221 12233333 22
Q ss_pred ccHHHhhhccCeeeeecee-ccccCCCCCCccccCcch-------------hhHHHH----HhhhccccC-----Ccccc
Q 013798 188 LDDELLQNVGNYILSCQTY-EGGIAGEPGSEAHGGYTF-------------CGLAAM----ILINEADRL-----DLDAL 244 (436)
Q Consensus 188 ~~~~~~~~~~~yIlscQ~~-dGGFg~~pg~esh~~~Ty-------------cAlaaL----~llg~~~~~-----~~~~l 244 (436)
.....++++++||+++|-. ||.+-. -+--|...|+ ++..+. .+|+...+. -++++
T Consensus 242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~r--Wg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~A 319 (408)
T 1r76_A 242 RALEATNAAIHCIVETQVVQDGKRLG--WGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGG 319 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCEETTEECC--CCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCcccc--hhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 1124578999999999999 887541 1111222222 333332 233333221 27889
Q ss_pred cceeeeecccccccc
Q 013798 245 IGWVVFRQGVEGGFQ 259 (436)
Q Consensus 245 ~~wL~~rQ~~~GGF~ 259 (436)
++||.+.|.++|++.
T Consensus 320 v~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 320 VAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHSCCCC----
T ss_pred HHHHHHhhcCCCcee
Confidence 999999999999887
No 25
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.55 E-value=1.1e-05 Score=95.06 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred hhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCc-cccccchhHHHHHHh-hcCCCCcccccc--------Cc-
Q 013798 100 FLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKS-LPSINRSKVYTFLKC-MKDPSGAFRMHD--------AG- 168 (436)
Q Consensus 100 ~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~-l~~id~~~~~~~L~~-~Q~~dGgF~~~~--------~g- 168 (436)
-+++.|++||||+...+.+++.|.|.+++-+|.....--. .+.-...++++||.+ .|++||+|.... +|
T Consensus 1038 r~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~ 1117 (1642)
T 3prx_B 1038 QQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGI 1117 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCc
Confidence 3456899999999876677889999999999877653100 122223578999998 899999996421 11
Q ss_pred ---ccchhhhhhHHHHHHHHhhc---------cHHHhhhccCeeeeecee-c----------------------------
Q 013798 169 ---EIDVRACYTAISVASILNIL---------DDELLQNVGNYILSCQTY-E---------------------------- 207 (436)
Q Consensus 169 ---e~D~r~tY~a~~~~~LL~~~---------~~~~~~~~~~yIlscQ~~-d---------------------------- 207 (436)
+.++ +-.|....+|+... ....++++.+||.+.... .
T Consensus 1118 ~~~~~~~--~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~~~~~l~~l~~ 1195 (1642)
T 3prx_B 1118 QGAEEEV--YLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQLNDDRVLMAAS 1195 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcc--cchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHh
Confidence 2233 33333333343210 012455666666543110 0
Q ss_pred -cccCC-CCCC-ccccCcchhhHHHHHhhhccccCCcccccceeeeecccccccccccccccccchhccchhHHH
Q 013798 208 -GGIAG-EPGS-EAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA 279 (436)
Q Consensus 208 -GGFg~-~pg~-esh~~~TycAlaaL~llg~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cYsfw~~~~l~ 279 (436)
|+.-| .|+. ...+-.|.+||.++..++.. ......++||.+.|...|||..-. ||.-..-+++-+.
T Consensus 1196 ~~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~--~~a~~iv~WL~~qr~~~Ggf~STQ----dTvvaLqALa~Y~ 1264 (1642)
T 3prx_B 1196 TGRDHWEEYNAHTHNIEGTSYALLALLKMKKF--DQTGPIVRWLTDQNFYGETYGQTQ----ATVMAFQALAEYE 1264 (1642)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHhccCch--hhHHHHHHHHHHhccCCCcccCcH----HHHHHHHHHHHHH
Confidence 11111 1111 13456777888777666543 346789999999999999998543 5644444444443
No 26
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=97.48 E-value=4.3e-05 Score=77.29 Aligned_cols=119 Identities=12% Similarity=0.078 Sum_probs=69.5
Q ss_pred hhhcchhHhhhccCCCCCCCCCCCCC----Cchh----hHHHHHHHHHHhccCC-Ccccccc----------chhHHHHH
Q 013798 92 DLEDRTIEFLSRCQDPNGGYGGGPGQ----MPHL----ATTYAAVNALISLGGE-KSLPSIN----------RSKVYTFL 152 (436)
Q Consensus 92 ~~~~~~i~~l~~~q~~dGGF~~~~~~----~sh~----~~Ty~Al~~L~~Lg~~-~~l~~id----------~~~~~~~L 152 (436)
+...+.++||+..|+++|||+...-. ..|+ ..|--.+..|..++.. ..+..++ .++.++||
T Consensus 175 ~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~L 254 (408)
T 1r76_A 175 DAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCI 254 (408)
T ss_dssp HHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHH
Confidence 34578999999999999999874211 1111 2344455555555431 1112222 25789999
Q ss_pred HhhcCC-CCccccccCccc----------------chhhhhhHHHHHHHHhhcc--H---HHhhhccCeeeeeceecccc
Q 013798 153 KCMKDP-SGAFRMHDAGEI----------------DVRACYTAISVASILNILD--D---ELLQNVGNYILSCQTYEGGI 210 (436)
Q Consensus 153 ~~~Q~~-dGgF~~~~~ge~----------------D~r~tY~a~~~~~LL~~~~--~---~~~~~~~~yIlscQ~~dGGF 210 (436)
++.|.+ ||+|. +++..- -+...=+++.++.|+.... + ..++++++||.++|+.||++
T Consensus 255 l~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w 333 (408)
T 1r76_A 255 VETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAW 333 (408)
T ss_dssp HHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC---
T ss_pred HHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCce
Confidence 999999 99997 543111 1111122333444554432 1 25899999999999999998
Q ss_pred C
Q 013798 211 A 211 (436)
Q Consensus 211 g 211 (436)
-
T Consensus 334 ~ 334 (408)
T 1r76_A 334 V 334 (408)
T ss_dssp -
T ss_pred e
Confidence 6
No 27
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.48 E-value=2.7e-05 Score=79.05 Aligned_cols=115 Identities=15% Similarity=0.011 Sum_probs=76.6
Q ss_pred HHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHH--hhc-----cHHHhhhcc-
Q 013798 126 AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL--NIL-----DDELLQNVG- 197 (436)
Q Consensus 126 ~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL--~~~-----~~~~~~~~~- 197 (436)
.++.+|+..|.. + +++.++.|...|. +++|.....-.+|+ .|+++++|. +.. ....+++++
T Consensus 141 L~vLALC~~g~~-----v-~~~~v~~Ll~~~~-~~~~~~g~~~sVDT----~AMA~lAL~C~~~~~~~~~~~~~i~~al~ 209 (414)
T 2bb6_A 141 LGILALCVHQKR-----V-HDSVVGKLLYAVE-HKPHLLQDHVSVDT----MAMAGMAFSCLELSNLNPKQRNRINLALK 209 (414)
T ss_dssp HHHHHHHHTTCC-----C-CHHHHHHHHHHHH-SSSCSCCTTTHHHH----HHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCC-----c-cHHHHHHHHHHhh-ccCcCCCCcccccH----HHHHHHHHHHHhhcCCCcchHHHHHHHHH
Confidence 477777777753 2 3456666666555 45564222234565 456666553 221 112344444
Q ss_pred ---CeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhcccc---CCcccccceeeeecccccccc
Q 013798 198 ---NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR---LDLDALIGWVVFRQGVEGGFQ 259 (436)
Q Consensus 198 ---~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~---~~~~~l~~wL~~rQ~~~GGF~ 259 (436)
++|++-|++||+|| +...|..|+.+|...+.... .+..++++||.+ |..+|+|+
T Consensus 210 ~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 210 RVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence 88888999999997 36779999999999886422 356779999998 99999997
No 28
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.48 E-value=0.00013 Score=86.80 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=50.5
Q ss_pred hHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCcccccc---chhHHHHHHh-hcCCCCcccc
Q 013798 98 IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSIN---RSKVYTFLKC-MKDPSGAFRM 164 (436)
Q Consensus 98 i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id---~~~~~~~L~~-~Q~~dGgF~~ 164 (436)
++-++..|++||||+..++..++.+.|-+++..|..+... -.++ ..++++||.+ .|.++|+|..
T Consensus 1052 ~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~---~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1119 (1661)
T 2b39_A 1052 YTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANL---IAIDSKDLCETVKWLILEKQKPDGIFQE 1119 (1661)
T ss_dssp HHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTT---SCCCHHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred HHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhc---ccCCHHHHHHHHHHhhHhhCCCCCcccc
Confidence 3345678999999999888889999999999999887642 1233 2568899995 9999999963
No 29
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.43 E-value=0.00018 Score=80.59 Aligned_cols=167 Identities=17% Similarity=0.218 Sum_probs=100.0
Q ss_pred hcCCccceec--CCCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhc-cCCCCCCCCCCCCC-------------Cch
Q 013798 59 QLGPSFCSLD--ANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGGPGQ-------------MPH 120 (436)
Q Consensus 59 ~lp~~~~~~d--~~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~-~q~~dGGF~~~~~~-------------~sh 120 (436)
...++|...+ ....|++=+++..|..+.. .+++...+++++||.+ .|.+||.|...... ++.
T Consensus 313 ~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~ 392 (915)
T 2hr0_B 313 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKD 392 (915)
T ss_dssp CTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHH
T ss_pred cCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccc
Confidence 3466775543 3467988888888877753 3566778899999995 99999998653210 245
Q ss_pred hhHHHHHHHHHHhccCCC--ccccc--cchhHHHHHHhhcCC---------------------------------CCccc
Q 013798 121 LATTYAAVNALISLGGEK--SLPSI--NRSKVYTFLKCMKDP---------------------------------SGAFR 163 (436)
Q Consensus 121 ~~~Ty~Al~~L~~Lg~~~--~l~~i--d~~~~~~~L~~~Q~~---------------------------------dGgF~ 163 (436)
+..|.+++.+|...|... .+... ..+++++||.+.+.. +|.|.
T Consensus 393 ~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w 472 (915)
T 2hr0_B 393 MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRW 472 (915)
T ss_dssp HHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBC
T ss_pred cccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCC
Confidence 666777888887665310 01111 123567777765332 22211
Q ss_pred cccCc-ccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhh
Q 013798 164 MHDAG-EIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 234 (436)
Q Consensus 164 ~~~~g-e~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg 234 (436)
..+++ ..+++.+ ++++++++.........++++||++.|+.+|||+-. -.|..||-||+...
T Consensus 473 ~~~~~~~~~ve~T--ayaLlall~~~~~~~~~~~v~wL~~qq~~~Ggw~ST-------QdT~~Al~AL~~y~ 535 (915)
T 2hr0_B 473 EDPGKQLYNVEAT--SYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGST-------QATFMVFQALAQYQ 535 (915)
T ss_dssp CCSSCHHHHHHHH--HHHHHHHHHTTCTTTHHHHHHHHHTCCCSSSSCCSH-------HHHHHHHHHHHHHH
T ss_pred CCCCCCccchHHH--HHHHHHHHhcCChhhHHHHHHHHHhcccCCCCccch-------hhHHHHHHHHHHHH
Confidence 11111 1133333 334444443222345678899999999999999742 34777777776543
No 30
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.39 E-value=2.7e-05 Score=76.63 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=90.6
Q ss_pred chhHhhhccCCCCCCCCCCCC-------------CCchhhHHHHHHHHHHhccC---CCccccccchhHHHHHHhhcCCC
Q 013798 96 RTIEFLSRCQDPNGGYGGGPG-------------QMPHLATTYAAVNALISLGG---EKSLPSINRSKVYTFLKCMKDPS 159 (436)
Q Consensus 96 ~~i~~l~~~q~~dGGF~~~~~-------------~~sh~~~Ty~Al~~L~~Lg~---~~~l~~id~~~~~~~L~~~Q~~d 159 (436)
.+.+.|+..|+++|||.-... ..++...|..++..|.-+.. ++.+. --.++.++||+..|.++
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~-~Ai~Rgl~wlL~mQ~~n 113 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYR-DAVRKAANFLVNSQYST 113 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHH-HHHHHHHHHHHhccCCC
Confidence 457788999999999976321 24566778888888866532 10110 01257999999999999
Q ss_pred Cccccc-cC-cccchhhhhh---HHHHHHHHhhc-------------------cHHHhhhccCeeeeeceeccccCCCCC
Q 013798 160 GAFRMH-DA-GEIDVRACYT---AISVASILNIL-------------------DDELLQNVGNYILSCQTYEGGIAGEPG 215 (436)
Q Consensus 160 GgF~~~-~~-ge~D~r~tY~---a~~~~~LL~~~-------------------~~~~~~~~~~yIlscQ~~dGGFg~~pg 215 (436)
|||... +. +..-..-+|+ ..-++.+|+.. ....++++++||+++|-.+||+-..=
T Consensus 114 GGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~W- 192 (332)
T 1gxm_A 114 GALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVW- 192 (332)
T ss_dssp SCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCC-
T ss_pred CCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCee-
Confidence 999753 21 1111111221 12233333221 12457899999999999998754321
Q ss_pred CccccCcch-------------hhHHHHH----hhhccccC----Ccccccceeeeecc
Q 013798 216 SEAHGGYTF-------------CGLAAMI----LINEADRL----DLDALIGWVVFRQG 253 (436)
Q Consensus 216 ~esh~~~Ty-------------cAlaaL~----llg~~~~~----~~~~l~~wL~~rQ~ 253 (436)
+--|...|+ |++.+.. +++..... -++++++||.+.|.
T Consensus 193 g~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 193 CAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp CSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred ccccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence 112222333 3333332 23332211 26789999999997
No 31
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.39 E-value=0.00016 Score=84.09 Aligned_cols=180 Identities=18% Similarity=0.166 Sum_probs=106.7
Q ss_pred hhhhHHHHHHhhh------hcCCcccee--cCCCcchhHHHHHHHHhhc---ccchhhhhcchhHhhhccCCCCCCCCCC
Q 013798 46 RKNHVEYLLRGLQ------QLGPSFCSL--DANRPWICYWILHSMALLG---EFVDADLEDRTIEFLSRCQDPNGGYGGG 114 (436)
Q Consensus 46 r~~h~~yl~~~l~------~lp~~~~~~--d~~r~~~~yw~l~~L~lL~---~~~~~~~~~~~i~~l~~~q~~dGGF~~~ 114 (436)
+++-++++.+.++ .-.++|... +....|++-+++.+|..+. ..+++...+++++||.+.|.+||.|.+.
T Consensus 867 ~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 867 IDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp HHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 3455666655433 335666543 3457799999999998864 3367777899999999999999998653
Q ss_pred CC---------CCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCC-CCccccc-----------c-------
Q 013798 115 PG---------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDP-SGAFRMH-----------D------- 166 (436)
Q Consensus 115 ~~---------~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~-dGgF~~~-----------~------- 166 (436)
.. .......|.+++.+|.-.|....-.....+++++||.+.+.. +++|... .
T Consensus 947 ~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~ 1026 (1325)
T 2pn5_A 947 GAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALN 1026 (1325)
T ss_dssp SCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHH
T ss_pred ccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHH
Confidence 21 112344555555555433310000011234677788776554 5554210 0
Q ss_pred -----------------CcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHH
Q 013798 167 -----------------AGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAA 229 (436)
Q Consensus 167 -----------------~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaa 229 (436)
....+++.+ |+++++++.........++++||++.|+.+|||.-. -.|..||.|
T Consensus 1027 ~L~~~~~~~~~~~~~~w~~~s~ve~t--A~aLlall~~~~~~~~~~~v~wL~~q~~~~g~w~sT-------q~T~~aL~A 1097 (1325)
T 2pn5_A 1027 KLIDMSFIDADKNERFWNTTNPIETT--AYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFPST-------QDTFVGLKA 1097 (1325)
T ss_dssp HHHHTCEEETTTTEEECCSSSHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTSSCSSH-------HHHHHHHHH
T ss_pred HHHhhhhhccCCCcccCCCCCchHHH--HHHHHHHhhhccchhhHHHHHHHHhccCCCCCccch-------HHHHHHHHH
Confidence 001123222 445555554333456678899999999999999742 356677777
Q ss_pred HHhhh
Q 013798 230 MILIN 234 (436)
Q Consensus 230 L~llg 234 (436)
|+...
T Consensus 1098 L~~y~ 1102 (1325)
T 2pn5_A 1098 LTKMA 1102 (1325)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 32
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.36 E-value=0.00016 Score=79.43 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=63.6
Q ss_pred CCcchhHHHHHHHHhhcc--cchhhhhc-------chhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCcc
Q 013798 70 NRPWICYWILHSMALLGE--FVDADLED-------RTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSL 140 (436)
Q Consensus 70 ~r~~~~yw~l~~L~lL~~--~~~~~~~~-------~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l 140 (436)
++..-.-|++.-|...+. .++++.++ ..++-+++.|++||||++.++..++.+.|-+++.+|..... +
T Consensus 337 s~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~---~ 413 (767)
T 4fxk_B 337 IYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQE---Q 413 (767)
T ss_dssp GGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCS---S
T ss_pred HhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHh---h
Confidence 333334555555554443 12233333 34455678899999999988888999999999999988754 2
Q ss_pred cccc---chhHHHHHHhhcCCCCcccc
Q 013798 141 PSIN---RSKVYTFLKCMKDPSGAFRM 164 (436)
Q Consensus 141 ~~id---~~~~~~~L~~~Q~~dGgF~~ 164 (436)
-.+| ....++||.+.|.++|+|..
T Consensus 414 i~id~~~i~~a~~wL~~~Q~~~G~f~e 440 (767)
T 4fxk_B 414 VGGSPEKLQETSNWLLSQQQADGSFQD 440 (767)
T ss_dssp SSCCHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred cCcchHHHHHHHHHHHHhhhhcccchh
Confidence 2233 34688999999999999963
No 33
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=97.11 E-value=0.00052 Score=80.38 Aligned_cols=177 Identities=18% Similarity=0.238 Sum_probs=107.9
Q ss_pred hhhHHHHHHhhh------hcCCcccee------cCCCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhccCCCCCCCC
Q 013798 47 KNHVEYLLRGLQ------QLGPSFCSL------DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYG 112 (436)
Q Consensus 47 ~~h~~yl~~~l~------~lp~~~~~~------d~~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~ 112 (436)
++-++|+.+.++ .-.++|... +....|++=+++..|..... .+++...+++++||.+.|++||.|.
T Consensus 979 ~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~ 1058 (1451)
T 4acq_A 979 SKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFR 1058 (1451)
T ss_dssp HHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEEC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCccc
Confidence 344556555543 345676644 23678999999999887763 3567788999999999999999987
Q ss_pred CCC---------CCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhh----------------------------
Q 013798 113 GGP---------GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCM---------------------------- 155 (436)
Q Consensus 113 ~~~---------~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~---------------------------- 155 (436)
... |...++..|.+++.+|...|... .+ ...+++++||.+.
T Consensus 1059 ~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~-~~-~~i~~A~~~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~ 1136 (1451)
T 4acq_A 1059 SSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTV-TH-PVVRNALFCLESAWKTAQEGDHGSHVYTKALLAYAFALAGN 1136 (1451)
T ss_dssp CCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCT-TC-HHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTC
T ss_pred ccCcccchhhcCCCCCCccchHHHHHHHHHcCCCC-CC-HHHHHHHHHHHHhhhhcccccccCChHHHHHHHHHHHhcCC
Confidence 321 12356778889999998877431 11 1123455555432
Q ss_pred --------------cCCCCc---cccccC-------------cccchhhhhhHHHHHHHHhhc------cHHHhhhccCe
Q 013798 156 --------------KDPSGA---FRMHDA-------------GEIDVRACYTAISVASILNIL------DDELLQNVGNY 199 (436)
Q Consensus 156 --------------Q~~dGg---F~~~~~-------------ge~D~r~tY~a~~~~~LL~~~------~~~~~~~~~~y 199 (436)
...+|+ |..... ...++.. .+++.++++... +.....++++|
T Consensus 1137 ~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~--TayaLLall~~~~~~~~~d~~~a~~iv~W 1214 (1451)
T 4acq_A 1137 QDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEM--TSYVLLAYLTAQPAPTSEDLTSATNIVKW 1214 (1451)
T ss_dssp HHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTH--HHHHHHHHHCCSSCCCHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHH--HHHHHHHHhhccccccccchhhHHHHHHH
Confidence 112344 211100 0112221 234444554321 23457899999
Q ss_pred eeeeceeccccCCCCCCccccCcchhhHHHHHhhh
Q 013798 200 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 234 (436)
Q Consensus 200 IlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg 234 (436)
|.+.|++.|||+-. -.|..||-||+-..
T Consensus 1215 L~~qr~~~Ggf~ST-------QdTv~aL~ALa~Y~ 1242 (1451)
T 4acq_A 1215 ITKQQNAQGGFSST-------QDTVVALHALSKYG 1242 (1451)
T ss_dssp HTTCCCTTSCCSSH-------HHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCcccH-------HHHHHHHHHHHHHH
Confidence 99999999999853 25777777776543
No 34
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.01 E-value=0.00044 Score=70.20 Aligned_cols=130 Identities=12% Similarity=0.005 Sum_probs=77.8
Q ss_pred HHHHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCcc----ccccc--hhHHHH
Q 013798 78 ILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSL----PSINR--SKVYTF 151 (436)
Q Consensus 78 ~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l----~~id~--~~~~~~ 151 (436)
.+.+|-+.|..++ ...+..+...|. +++|.- +...++.+|-.|+.+|.-++....- ..+++ +.++++
T Consensus 142 ~vLALC~~g~~v~----~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~ 214 (414)
T 2bb6_A 142 GILALCVHQKRVH----DSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEK 214 (414)
T ss_dssp HHHHHHHTTCCCC----HHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcc----HHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Confidence 3334444555443 345555555444 456642 2235788888899999888742100 11211 234478
Q ss_pred HHhhcCCCCccccccCcccchhhhhhHHHHHHHH--hhcc-H--HHhhhccCeeeeeceeccccCCCCCCccccCcchhh
Q 013798 152 LKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL--NILD-D--ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCG 226 (436)
Q Consensus 152 L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL--~~~~-~--~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycA 226 (436)
|.+.|++||+|. ++.. +++++.+|+ +... . .+..+++++|++ |..||+|+ .+..|.-+
T Consensus 215 l~~~Q~~dG~FG-------N~~S--T~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~ 277 (414)
T 2bb6_A 215 ILKAQTPEGYFG-------NVYS--TPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQL 277 (414)
T ss_dssp HHHTBCTTSCBS-------STTT--HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHH
T ss_pred HHHhhcCCCCcc-------chhh--HHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHH
Confidence 888899999994 2322 355555554 4322 2 478889999999 99999997 23456555
Q ss_pred HHHHH
Q 013798 227 LAAMI 231 (436)
Q Consensus 227 laaL~ 231 (436)
|-+|.
T Consensus 278 lpaL~ 282 (414)
T 2bb6_A 278 LPVLN 282 (414)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 55554
No 35
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=96.98 E-value=0.00011 Score=72.30 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=75.4
Q ss_pred hHHHHHHhhcCCCCcccccc-------------CcccchhhhhhHHHHHHHHhhcc-----HHHhhhccCeeeeeceecc
Q 013798 147 KVYTFLKCMKDPSGAFRMHD-------------AGEIDVRACYTAISVASILNILD-----DELLQNVGNYILSCQTYEG 208 (436)
Q Consensus 147 ~~~~~L~~~Q~~dGgF~~~~-------------~ge~D~r~tY~a~~~~~LL~~~~-----~~~~~~~~~yIlscQ~~dG 208 (436)
.+.+-|+.-|+++|||.... ....|...|...+..+.-+...+ ...++++++||++.|..+|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 46788899999999997521 12346555655554443222111 2557899999999999999
Q ss_pred ccCCC-CCC-ccccCc------chhhHHHHHhhhcc----------------ccCCcccccceeeeeccccccccccc
Q 013798 209 GIAGE-PGS-EAHGGY------TFCGLAAMILINEA----------------DRLDLDALIGWVVFRQGVEGGFQGRT 262 (436)
Q Consensus 209 GFg~~-pg~-esh~~~------TycAlaaL~llg~~----------------~~~~~~~l~~wL~~rQ~~~GGF~gr~ 262 (436)
||+.. |.. .-+... |.-.|-.|..++.. ....++++++||++.|..+||..||=
T Consensus 115 GWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~W 192 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVW 192 (332)
T ss_dssp CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCC
T ss_pred CccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCee
Confidence 99974 321 112222 33455555555421 11236789999999999999999884
No 36
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=96.89 E-value=0.0017 Score=77.29 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=49.3
Q ss_pred hhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHh-hcCCCCcccc
Q 013798 101 LSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRM 164 (436)
Q Consensus 101 l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~-~Q~~dGgF~~ 164 (436)
+++.|++||||+..++..++.+.|-+++..|..+...-..+.--..++++||.+ .|.++|+|..
T Consensus 1056 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1056 IMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp GGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred HhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence 567899999999887778899999999999988764211111112568899999 8999999963
No 37
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=96.70 E-value=0.00039 Score=70.19 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=75.9
Q ss_pred HHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCcccchhhhhhHHHHHHHHhhcc--------------HHH
Q 013798 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD--------------DEL 192 (436)
Q Consensus 127 Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~--------------~~~ 192 (436)
++.+|+..|. .+ +.+.++-|...++.+|+ .-.+|+ .|+++++|..... ...
T Consensus 120 ~vLALC~~~~-----~v-~~~~v~kLl~~~~~~g~-----~~sVDT----~AMa~LAL~C~~~~~~~~~~~~~~~~i~~a 184 (399)
T 2pmv_A 120 AILALCQKNS-----EA-TLPIAVRFAKTLLANSS-----PFNVDT----GAMATLALTCMYNKIPVGSEEGYRSLFGQV 184 (399)
T ss_dssp HHHHHHHHCH-----HH-HHHHHHHHHHHHHHCCS-----CCCHHH----HHHHHHHHHHHHTBCCTTCCSSHHHHHHHH
T ss_pred HHHHHHhcCC-----CC-CHHHHHHHHHHHHccCC-----cccchH----HHHHHHHHHHHhhccccccchhhHHHHHHH
Confidence 5566666653 22 34556666666665642 114565 4666666532111 245
Q ss_pred hhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhcc--ccCCcccccceeeeecccccccc
Q 013798 193 LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA--DRLDLDALIGWVVFRQGVEGGFQ 259 (436)
Q Consensus 193 ~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~--~~~~~~~l~~wL~~rQ~~~GGF~ 259 (436)
+++++++|++-|++||+|| +...|--|+.+|...+.. ...+..++++||.. |..+|+|.
T Consensus 185 i~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 185 LKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred HHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC
Confidence 7889999999999999997 478899999999998873 23367789999998 88999997
No 38
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=95.30 E-value=0.0036 Score=74.46 Aligned_cols=200 Identities=15% Similarity=0.140 Sum_probs=107.1
Q ss_pred hhhhHHHHHHhhh------hcCCccce--ecCCCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhc-cCCCCCCCCCC
Q 013798 46 RKNHVEYLLRGLQ------QLGPSFCS--LDANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGG 114 (436)
Q Consensus 46 r~~h~~yl~~~l~------~lp~~~~~--~d~~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~-~q~~dGGF~~~ 114 (436)
+++-++++....+ .-.++|.- ......|++=|++..|..+.. .+++...+++++||.+ .|.++|.|...
T Consensus 1042 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1042 KQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp HHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence 3344556554432 23566643 334568999999998877653 4677788999999999 99999988642
Q ss_pred -C-------CC------CchhhHHHHHHHHHHhccCCCccccc--cchhHHHHHHhhcCCCCccccccCcccchhhhhhH
Q 013798 115 -P-------GQ------MPHLATTYAAVNALISLGGEKSLPSI--NRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 178 (436)
Q Consensus 115 -~-------~~------~sh~~~Ty~Al~~L~~Lg~~~~l~~i--d~~~~~~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a 178 (436)
+ +. ++.+..|.+++.+|...+....+... ...++++||.+.... ....|..
T Consensus 1122 ~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~-------------~~~~y~~ 1188 (1676)
T 3cu7_A 1122 SQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP-------------AQSTFTL 1188 (1676)
T ss_dssp SSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS-------------CSCHHHH
T ss_pred ccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc-------------cCCHHHH
Confidence 1 00 12455666677776554321001111 124678888764221 1123443
Q ss_pred HHHHH---HHhhccHHHhhhccCeeeeeceeccc------cCCCCC-----C-----ccccCcchhhHHHHHhhhccccC
Q 013798 179 ISVAS---ILNILDDELLQNVGNYILSCQTYEGG------IAGEPG-----S-----EAHGGYTFCGLAAMILINEADRL 239 (436)
Q Consensus 179 ~~~~~---LL~~~~~~~~~~~~~yIlscQ~~dGG------Fg~~pg-----~-----esh~~~TycAlaaL~llg~~~~~ 239 (436)
..+++ +.|... ...+++.+.|.+....+|+ |...+. . ..+...|.+||.+|...+. ..
T Consensus 1189 A~lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~--~~ 1265 (1676)
T 3cu7_A 1189 AISAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD--IN 1265 (1676)
T ss_dssp HHHHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC--HH
T ss_pred HHHHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC--hh
Confidence 32222 233322 1133344444443333333 211100 0 0122345566666555542 23
Q ss_pred Ccccccceeeeecccccccccc
Q 013798 240 DLDALIGWVVFRQGVEGGFQGR 261 (436)
Q Consensus 240 ~~~~l~~wL~~rQ~~~GGF~gr 261 (436)
...++++||.+.|...|||..-
T Consensus 1266 ~~~~iv~wL~~qr~~~Gg~~ST 1287 (1676)
T 3cu7_A 1266 YVNPVIKWLSEEQRYGGGFYST 1287 (1676)
T ss_dssp HHHHHHHHHHHHSCSSSCCSTT
T ss_pred HHHHHHHHHHhccCCCCCcccc
Confidence 4668899999888778999854
No 39
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=94.76 E-value=0.056 Score=64.26 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=52.4
Q ss_pred cCCcccee--cCCCcchhHHHHHHHHhhcc--cchhhhhcchhHhhhc-cCCCCCCCCCC-C-------C-----CCchh
Q 013798 60 LGPSFCSL--DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGG-P-------G-----QMPHL 121 (436)
Q Consensus 60 lp~~~~~~--d~~r~~~~yw~l~~L~lL~~--~~~~~~~~~~i~~l~~-~q~~dGGF~~~-~-------~-----~~sh~ 121 (436)
-.++|.-. ....+|++=|++..|..+.. .+++...+++++||.+ .|.++|.|... + + .++.+
T Consensus 1061 ~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~ 1140 (1661)
T 2b39_A 1061 KSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDV 1140 (1661)
T ss_dssp TTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSH
T ss_pred CCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCcc
Confidence 35666432 34568999999998877653 3677788999999995 99999988532 1 1 12356
Q ss_pred hHHHHHHHHHHhcc
Q 013798 122 ATTYAAVNALISLG 135 (436)
Q Consensus 122 ~~Ty~Al~~L~~Lg 135 (436)
..|.+++.+|...|
T Consensus 1141 ~ltAyvl~aL~~~~ 1154 (1661)
T 2b39_A 1141 SLTAFVLIALHEAK 1154 (1661)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhcc
Confidence 66777777776543
No 40
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=94.35 E-value=0.035 Score=56.04 Aligned_cols=62 Identities=21% Similarity=0.143 Sum_probs=50.4
Q ss_pred hhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccc
Q 013798 93 LEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR 163 (436)
Q Consensus 93 ~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~ 163 (436)
..++++++|.+.|++||+|| ++.+|--|+++|...+..+ -..-+..++++||.+ |.+||+|.
T Consensus 184 ai~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~-~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 184 VLKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPS-KKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCC-SSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred HHHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCc-cccccHHHHHHHHHH-HhhCCCcC
Confidence 34667888999999999997 6889999999999988631 122256789999998 89999996
No 41
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=94.06 E-value=0.0092 Score=70.60 Aligned_cols=102 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCccccccCcccchhhhhhHHHHHHHH---hh-ccHHHhhhccCeeee-eceeccccCCCC----------
Q 013798 150 TFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---NI-LDDELLQNVGNYILS-CQTYEGGIAGEP---------- 214 (436)
Q Consensus 150 ~~L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL---~~-~~~~~~~~~~~yIls-cQ~~dGGFg~~p---------- 214 (436)
.-+++.|++||||....+.+.++..|=.++-++... .. .++..+.++++||.+ +|..||.|....
T Consensus 1037 qr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg 1116 (1642)
T 3prx_B 1037 AQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGG 1116 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCC
Confidence 334457889999987644333332121112122211 22 455678999999998 999999996531
Q ss_pred --CCccccCcchhhHHHHHhhhccc-------cCCcccccceeeee
Q 013798 215 --GSEAHGGYTFCGLAAMILINEAD-------RLDLDALIGWVVFR 251 (436)
Q Consensus 215 --g~esh~~~TycAlaaL~llg~~~-------~~~~~~l~~wL~~r 251 (436)
+.+.+...|.+.+.||.-.+... ...+++++.||.++
T Consensus 1117 ~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1117 IQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp ----------------------------------------------
T ss_pred ccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 22456667777777776654321 12467888999764
No 42
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=93.93 E-value=0.049 Score=59.64 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=67.6
Q ss_pred CchhhHHHHHHHHHHhccCCCccccccchhHHHH-------HHhhcCCCCccccccCcccchhhhhhHHHHHHHH---hh
Q 013798 118 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTF-------LKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---NI 187 (436)
Q Consensus 118 ~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~-------L~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL---~~ 187 (436)
.+....+.+++..|...+....+..-.++++.++ +.+.|++||||....++..++.-|=.++-++... ..
T Consensus 336 ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~ 415 (767)
T 4fxk_B 336 MIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVG 415 (767)
T ss_dssp GGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSS
T ss_pred HHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcC
Confidence 4566666666666665553212222223344444 5567999999987655544432221222222222 22
Q ss_pred ccHHHhhhccCeeeeeceeccccCCC------------CCCccccCcchhhHHHHHhhhc
Q 013798 188 LDDELLQNVGNYILSCQTYEGGIAGE------------PGSEAHGGYTFCGLAAMILINE 235 (436)
Q Consensus 188 ~~~~~~~~~~~yIlscQ~~dGGFg~~------------pg~esh~~~TycAlaaL~llg~ 235 (436)
.++..+.++..||++.|..||.|... .+.+.....|.+.+.+|...+.
T Consensus 416 id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~ 475 (767)
T 4fxk_B 416 GSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLA 475 (767)
T ss_dssp CCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCC
Confidence 44567888999999999999999642 1112334556777777765554
No 43
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=77.44 E-value=5.4 Score=43.87 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=41.0
Q ss_pred cchhHhhhccCCCCCCCCCCCCC--CchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhh
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPGQ--MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCM 155 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~~--~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~ 155 (436)
.+.++||+..|.+||+||..... .--+.+|.+||.+|.--+.. .-..++.+.||.+.
T Consensus 104 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~----~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 104 PQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG----DLQVEQGIEFIKSN 162 (817)
T ss_dssp HHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHH
Confidence 57899999999999999964332 22578999999999875432 11235677888764
No 44
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=76.94 E-value=1.8 Score=47.24 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=41.0
Q ss_pred hcchhHhhhccCCCCCCCCCCCCCC--chhhHHHHHHHHHHhccCCCccccccchhHHHHHHhh
Q 013798 94 EDRTIEFLSRCQDPNGGYGGGPGQM--PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCM 155 (436)
Q Consensus 94 ~~~~i~~l~~~q~~dGGF~~~~~~~--sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~ 155 (436)
-.+.++||+..|.+||+||...... --+.+|.+||.+|.--+.. .-..++.+.||.+.
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~----~~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG----HSQVQQGAEFIAEN 114 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHH
Confidence 3568999999999999999643222 2478999999999775431 11235677888753
No 45
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=76.68 E-value=1.9 Score=46.84 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=39.7
Q ss_pred cchhHhhhccCCCCCCCCCCCCCC--chhhHHHHHHHHHHhccCCCccccccchhHHHHHHh
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPGQM--PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC 154 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~~~--sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~ 154 (436)
.+.++||+..|.+||+||...+.. --+.+|.+||.+|.--+.. .-..++.+.||.+
T Consensus 53 p~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~rGl~fl~~ 110 (727)
T 3pya_A 53 PSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF----PHQCNKGITFFRE 110 (727)
T ss_dssp HHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHH
Confidence 568999999999999999643222 2478999999999774321 1123567788875
No 46
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=76.15 E-value=1.9 Score=47.18 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=40.6
Q ss_pred cchhHhhhccCCCCCCCCCCCCCC--chhhHHHHHHHHHHhccCCCccccccchhHHHHHHhh
Q 013798 95 DRTIEFLSRCQDPNGGYGGGPGQM--PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCM 155 (436)
Q Consensus 95 ~~~i~~l~~~q~~dGGF~~~~~~~--sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~ 155 (436)
.+.++||+..|.+||+||...... --+.+|.+||.+|.--+.. .-..++.+.||.+.
T Consensus 77 p~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~----~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 77 PETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG----ETQVQKGIEFFRTQ 135 (785)
T ss_dssp HHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC----HHHHHHHHHHHHHH
Confidence 578999999999999999643222 2388999999999875432 11235677787653
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=29.94 E-value=2e+02 Score=31.24 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=75.5
Q ss_pred hhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccch-hhhhcchhHhhhccCCCCCCCCCCC-CCCchhh
Q 013798 45 QRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD-ADLEDRTIEFLSRCQDPNGGYGGGP-GQMPHLA 122 (436)
Q Consensus 45 ~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~-~~~~~~~i~~l~~~q~~dGGF~~~~-~~~sh~~ 122 (436)
.-++..+||.+.+++.+++.-..=+..+.---|.+.+|.=||.+-. +..++.+++.|.++.... |.+..+ +..+++.
T Consensus 243 ~d~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~ 321 (785)
T 3s9v_A 243 GNKKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDER-GIGWARENPVPDID 321 (785)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTT-CCCSSTTCSSCCHH
T ss_pred CChhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhc-cccccccCCCCCHH
Confidence 3467788999988776554433333344556677888888886421 345678889988765544 343332 2346788
Q ss_pred HHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCc-ccchhhhhh
Q 013798 123 TTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYT 177 (436)
Q Consensus 123 ~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~g-e~D~r~tY~ 177 (436)
.|--++..|...|.+ +..+- +...+..+|.|....+. ..|++..+.
T Consensus 322 ~tAl~FRlLR~~Gy~-----VS~dv----f~~F~d~~g~F~~~~~e~~~dv~g~L~ 368 (785)
T 3s9v_A 322 DTAMGLRILRLHGYN-----VSSDV----LKTFRDENGEFFCFLGQTQRGVTDMLN 368 (785)
T ss_dssp HHHHHHHHHHHTTCC-----CCGGG----GGGGBCTTSCBCSSTTCCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCC-----CCHHH----HHHHHhcCCCeeeccccccccccccHH
Confidence 888899999999963 21121 22234568889765532 346655444
No 48
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=29.50 E-value=2.1e+02 Score=30.98 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=74.4
Q ss_pred hhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHHhhcccch-hhhhcchhHhhhccCCCCCCCCCC-CCCCchhhH
Q 013798 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD-ADLEDRTIEFLSRCQDPNGGYGGG-PGQMPHLAT 123 (436)
Q Consensus 46 r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lL~~~~~-~~~~~~~i~~l~~~q~~dGGF~~~-~~~~sh~~~ 123 (436)
-++-.+||.+.+++.+++.-..=+..+.---|.+.+|.-||.+-. +..++.+++.|.++....| .+.. ++...++..
T Consensus 220 d~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g-i~~~~~~~~~Dl~~ 298 (764)
T 3p5p_A 220 DEKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERG-IGWGRDSLVPDLNT 298 (764)
T ss_dssp CHHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTC-CCSSTTCSSCCHHH
T ss_pred ChhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc-cccccCCCCCCHHH
Confidence 356788999888776554433333344556677888888886421 3456788899887655443 4432 333567888
Q ss_pred HHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccccccCc-ccchhhhhh
Q 013798 124 TYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYT 177 (436)
Q Consensus 124 Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~~~~~g-e~D~r~tY~ 177 (436)
|--++..|...|.+ +..+- +...+..+|.|....+. ..|++..+.
T Consensus 299 tAl~FRlLR~~Gy~-----VS~dv----f~~F~d~~g~F~~~~~~~~~dv~gmL~ 344 (764)
T 3p5p_A 299 TALGLRTLRMHGYN-----VSSDV----LNNFKDENGRFFSSAGQTHVELRSVVN 344 (764)
T ss_dssp HHHHHHHHHHTTCC-----CCGGG----GGGGBCTTSCBCSCTTCSCCCHHHHHH
T ss_pred HHHHHHHHHhcCCC-----ccHhH----HHhhhcCCCCccccccccccccHHHHH
Confidence 88899999999963 21121 12234467888765432 346654443
No 49
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=21.17 E-value=51 Score=19.96 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.7
Q ss_pred CCCccCCCCCCCCCcce
Q 013798 360 PRGGLRDKLRKPRDYYH 376 (436)
Q Consensus 360 ~~GGf~~~P~k~~D~~h 376 (436)
.+|||.-.|.|..|-|.
T Consensus 5 enggfcpdpekmgdwcc 21 (32)
T 4b2v_A 5 ENGGFCPDPEKMGDWCC 21 (32)
T ss_dssp CTTCBCCCTTTTCCCCS
T ss_pred hcCCcCCChHHhcchhh
Confidence 47999999999999764
Done!