BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013800
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D EA EYY++ ++ YP + N K+GD A +YY A P + E+W
Sbjct: 24 DYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNL 83
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDS 301
++ D A+ Y+++A P ++
Sbjct: 84 GNAYYK-QGDYDEAIEYYQKALELYPNNA 111
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D EA EYY++ ++ P + N K+GD A +YY A DP + E+W
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83
Query: 273 AKLVWELHRDQHRALTYFERA 293
++ D A+ Y+++A
Sbjct: 84 GNAYYK-QGDYDEAIEYYQKA 103
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394
+GD + A EY+ +A+ +P + E ++ D+D+A+ Y+++A++ P ++
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEA 79
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394
+GD + A EY+ +A+ +P + E ++ D+D+A+ Y+++A++ P ++
Sbjct: 56 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEA 113
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 24/205 (11%)
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
F D +A E + + I+E + N+A LL +L RA +Y+ A D ++
Sbjct: 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95
Query: 271 QYAK--LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEME------------- 315
+V E++++ A FE+A A ++ ++ L ++E
Sbjct: 96 GAGNVYVVKEMYKE---AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152
Query: 316 DDGEDDKAQEEHIQV-LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374
+ E+D E Q + + ++G L+ A F+ +PG + A + + +
Sbjct: 153 ELNEND--TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN-AGVTYAYKENR 209
Query: 375 DKALCYFERAVQASPADSHVLAAYA 399
+KAL ++A+ P H+LA +A
Sbjct: 210 EKALEMLDKAIDIQP--DHMLALHA 232
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 186 LAMGLGISVPGFDDAGEVV-DLIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRNYAQ 240
+G+GISVPG + + + D I +F D AE E KR+ ++ L+R+Y +
Sbjct: 15 FVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTK 71
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D +A EYY++ ++ P + N K+GD +A +YY A DP + ++W +
Sbjct: 24 DYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRR 83
Query: 273 AKLVWELHRDQHRALTYFERA 293
++ D +A+ +++A
Sbjct: 84 GNAYYK-QGDYQKAIEDYQKA 103
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293
+N K+GD +A +YY A DP + +W ++ D +A+ Y+++A
Sbjct: 13 KNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYK-QGDYQKAIEYYQKA 69
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL----- 275
Y+R I+ P P N A L++KG + AED YN A P +S A +
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319
Query: 276 -VWELHRDQHRALTYFERAALAAPQDSNIL 304
+ E R +AL F A A +++L
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVL 349
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 32/150 (21%)
Query: 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-- 301
K+GD A +YY A DP E+W ++ D A+ Y+++A P+ +
Sbjct: 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEA 71
Query: 302 --NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359
N+ AY +GD + A EY+ +A+ +P E
Sbjct: 72 WYNLGNAY--------------------------YKQGDYDEAIEYYQKALELDPRSAEA 105
Query: 360 MSQYAKLVWELHHDHDKALCYFERAVQASP 389
++ D+D+A+ Y+++A++ P
Sbjct: 106 WYNLGNAYYK-QGDYDEAIEYYQKALELDP 134
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D EA EYY++ ++ P N K+GD A +YY A DP E+W
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75
Query: 273 AKLVWELHRDQHRALTYFERA 293
++ D A+ Y+++A
Sbjct: 76 GNAYYK-QGDYDEAIEYYQKA 95
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D EA EYY++ ++ P N K+GD A +YY A DP E+W
Sbjct: 50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
Query: 273 AKLVWELHRDQHRALTYFERA 293
++ D A+ Y+++A
Sbjct: 110 GNAYYK-QGDYDEAIEYYQKA 129
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303
K+GDL + A + DPGD E+W Q+ + + ++ A+ +R P +
Sbjct: 77 KEGDLPVTILFMEAAILQDPGDAEAW-QFLGITQAENENEQAAIVALQRCLELQPNNLKA 135
Query: 304 LAAYAC 309
L A A
Sbjct: 136 LMALAV 141
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394
+GD + A EY+ +A+ +P + E ++ D+D+A+ Y+++A++ P ++
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEA 79
>pdb|3L2D|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2E|B Chain B, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|D Chain D, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2F|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2G|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2
Length = 390
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 324 QEEHIQVLPIQSKGDLEGAEEYFSRAIL 351
+E+HI+V+ +Q GDL+ F+R +L
Sbjct: 242 EEDHIRVISMQKGGDLKAVFSRFARGLL 269
>pdb|3L2E|A Chain A, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|C Chain C, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp
Length = 374
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 324 QEEHIQVLPIQSKGDLEGAEEYFSRAIL 351
+E+HI+V+ +Q GDL+ F+R +L
Sbjct: 226 EEDHIRVISMQKGGDLKAVFSRFARGLL 253
>pdb|3UX9|A Chain A, Structural Insights Into A Human Anti-Ifn Antibody
Exerting Therapeutic Potential For Systemic Lupus
Erythematosus
pdb|3UX9|C Chain C, Structural Insights Into A Human Anti-Ifn Antibody
Exerting Therapeutic Potential For Systemic Lupus
Erythematosus
Length = 169
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324
DG + Q A + LH + F +A D ++L + L++ +D E Q
Sbjct: 47 DGNQF-QKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLEACVMQ 105
Query: 325 EEHIQVLPIQSKGDLEGAEEYFSRAIL 351
EE + P+ + + ++YF R L
Sbjct: 106 EERVGETPLMNADSILAVKKYFRRITL 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,188,521
Number of Sequences: 62578
Number of extensions: 430959
Number of successful extensions: 1161
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 57
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)