BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013800
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095 OS=Dictyostelium
discoideum GN=DDB_G0285095 PE=4 SV=1
Length = 263
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 28/191 (14%)
Query: 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284
+ E P LL Y LL +G AE+ A D + +W Y + + + +
Sbjct: 80 LQEQPQDSDLLAQYGVLLSMEGKNKEAEESLRKAVEVDTDNSRAWQAYGEFLERTNNPKK 139
Query: 285 RALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD 338
Y E AAP+ DS++L +YA F IQ G+
Sbjct: 140 AKEVYGEAYKHAAPKIALDEDDSSLLLSYAIF----------------------IQKSGE 177
Query: 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398
++ AE+ + R + + E + +Y + E+ D +K Y + A P Y
Sbjct: 178 IDKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLKDAADIDPPSPEWCTRY 237
Query: 399 ACFLWETEEDE 409
+ +L ++DE
Sbjct: 238 SNYLKTYKKDE 248
>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1
Length = 314
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 24/187 (12%)
Query: 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262
V I+ + A + +++ +YP + ++L ++G L ++ + +++A +
Sbjct: 118 VTAFILKKLGEYDYALKIIDKILKKYPKSAIAWAEKGEILYREGKLKKSLECFDNALKIN 177
Query: 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322
P D +S + +++++L R Y E A C E + +D +
Sbjct: 178 PKDCQSLLYKGEILFKLGR-------YGE--------------ALKCLKKVFERNNKDIR 216
Query: 323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382
A IQ+L G L A EY +A+ NP D ++ Y ++ +++A+ YF+
Sbjct: 217 ALMYIIQILIYL--GRLNQALEYTKKALKLNP-DDPLLYLYKGIILNKLGKYNEAIKYFD 273
Query: 383 RAVQASP 389
+ ++ +P
Sbjct: 274 KVLEINP 280
>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1
Length = 1036
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 26/179 (14%)
Query: 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276
A + Y+R I+ P P N A L++KG + AED YN A P +S A
Sbjct: 268 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN-- 325
Query: 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336
+ R+Q NI A + +E E A VL Q +
Sbjct: 326 --IKREQ-----------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQ 364
Query: 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADSH 393
G L+ A ++ AI +P + S + E+ D AL + RA+Q +P AD+H
Sbjct: 365 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAFADAH 422
>sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2
Length = 1046
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 26/179 (14%)
Query: 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276
A + Y+R I+ P P N A L++KG + AED YN A P +S A
Sbjct: 278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN-- 335
Query: 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336
+ R+Q NI A + +E E A VL Q +
Sbjct: 336 --IKREQ-----------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQ 374
Query: 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADSH 393
G L+ A ++ AI +P + S + E+ D AL + RA+Q +P AD+H
Sbjct: 375 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAFADAH 432
>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1
SV=2
Length = 1046
Score = 39.3 bits (90), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 26/179 (14%)
Query: 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276
A + Y+R I+ P P N A L++KG + AED YN A P +S A
Sbjct: 278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN-- 335
Query: 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336
+ R+Q NI A + +E E A VL Q +
Sbjct: 336 --IKREQ-----------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQ 374
Query: 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADSH 393
G L+ A ++ AI +P + S + E+ D AL + RA+Q +P AD+H
Sbjct: 375 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAFADAH 432
>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1
Length = 1046
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 26/179 (14%)
Query: 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276
A + Y+R I+ P P N A L++KG + AED YN A P +S A
Sbjct: 278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN-- 335
Query: 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336
+ R+Q NI A + +E E A VL Q +
Sbjct: 336 --IKREQ-----------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQ 374
Query: 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADSH 393
G L+ A ++ AI +P + S + E+ D AL + RA+Q +P AD+H
Sbjct: 375 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAFADAH 432
>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3
Length = 1046
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 26/179 (14%)
Query: 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276
A + Y+R I+ P P N A L++KG + AED YN A P +S A
Sbjct: 278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN-- 335
Query: 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336
+ R+Q NI A + +E E A VL Q +
Sbjct: 336 --IKREQ-----------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQ 374
Query: 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADSH 393
G L+ A ++ AI +P + S + E+ D AL + RA+Q +P AD+H
Sbjct: 375 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAFADAH 432
>sp|A5A6J9|IFIT3_PANTR Interferon-induced protein with tetratricopeptide repeats 3 OS=Pan
troglodytes GN=IFIT3 PE=2 SV=1
Length = 490
Score = 38.9 bits (89), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262
++ L + + AE E++ + +++ PC +LR+ A+ ++KGDL +A + + +
Sbjct: 212 LLGLKLQKMNKEAEGEQFVEEALEKAPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLEST 271
Query: 263 PGDGESWMQ 271
P +G + Q
Sbjct: 272 PNNGYLYHQ 280
>sp|O14879|IFIT3_HUMAN Interferon-induced protein with tetratricopeptide repeats 3 OS=Homo
sapiens GN=IFIT3 PE=1 SV=1
Length = 490
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262
++ L + + AE E++ + +++ PC +LR+ A+ ++KGDL +A + + +
Sbjct: 212 LLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLEST 271
Query: 263 PGDGESWMQ 271
P +G + Q
Sbjct: 272 PNNGYLYHQ 280
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 24/217 (11%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
D AEA+ YY++ + +P H L N LL+ + A + P +++
Sbjct: 588 KDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSS 647
Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKA---QEEHI 328
A L+ E R + A ++ P S++ YA FL D G +KA ++ I
Sbjct: 648 LASLLAEQERFK-EAEDIYQAGIKNCPDSSDLHNNYAVFL---VDSGFPEKAVAHYQQAI 703
Query: 329 QVLP------------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK 376
Q+ P +S G+ AEE++ RA L E++S L + H +
Sbjct: 704 QLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRA-LKVARTAEVLSPLGALYYNTGR-HKE 761
Query: 377 ALCYFERAVQASPADSHV---LAAYACFLWETEEDED 410
AL + AV P+ + LA + +T+E E
Sbjct: 762 ALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEK 798
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 19/216 (8%)
Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
P F DA + ++ + EAE+ Y+ I P L NYA L G +A +
Sbjct: 639 PDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAH 698
Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314
Y A P + + +L L + +A ++ R AL + + +L+ +
Sbjct: 699 YQQAIQLSPSHHVAVVNLGRLYRSLGENS-KAEEWYRR-ALKVARTAEVLSPLGALYYNT 756
Query: 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA---------- 364
E + E + + P Q + L A+ A++ + E ++ +
Sbjct: 757 GRHKEALEVYREAVSLQPSQRELRLALAQVL---AVMGQTKEAEKITSHIVSEEPRCLEC 813
Query: 365 -KLVWELHHD---HDKALCYFERAVQASPADSHVLA 396
+L+ +H H KAL E+A+Q P D V++
Sbjct: 814 YRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKVIS 849
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 21/221 (9%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D+AEA+ YY+R + +P H L N LL+ + A + P +++
Sbjct: 529 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSL 588
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
A L+ E R + A ++ P S++ Y FL D G +KA + Q +
Sbjct: 589 ASLLAEQERFK-EAEEIYQTGIKNCPDSSDLHNNYGVFL---VDTGLPEKAVAHYQQAIK 644
Query: 333 I---------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377
+ +S G+ AEE++ RA L EI+S L + +++A
Sbjct: 645 LSPSHHVAMVNLGRLYRSLGENSMAEEWYKRA-LQVAHKAEILSPLGALYYNTGR-YEEA 702
Query: 378 LCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418
L ++ A P+ + A A L + ++ K ++
Sbjct: 703 LQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHI 743
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 19/216 (8%)
Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
P F DA + ++ + EAEE Y+ I P L NY L G +A +
Sbjct: 579 PEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAH 638
Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314
Y A P + + +L L + A +++R AL + IL+ +
Sbjct: 639 YQQAIKLSPSHHVAMVNLGRLYRSLGENS-MAEEWYKR-ALQVAHKAEILSPLGALYYNT 696
Query: 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA---------- 364
E + +E + P Q + L A+ A++ + E M+ +
Sbjct: 697 GRYEEALQIYQEAAALQPSQRELRLALAQVL---AVMGQTKEAEKMTNHIVSEETGCLEC 753
Query: 365 ----KLVWELHHDHDKALCYFERAVQASPADSHVLA 396
++ +HDKAL ++A+Q P D V++
Sbjct: 754 YRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVIS 789
>sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing protein 2 OS=Xenopus laevis
GN=tmtc2 PE=2 SV=1
Length = 836
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 154 NMG-LIEEEGEYEEEGLNGIGEEIE---RPVSP-PMYLAMGLGISVPGFDDAGEVVDLIM 208
N+G L E+G+YE+ L E I+ R SP +Y MG +A ++++
Sbjct: 611 NLGKLYHEQGQYED-ALIVYKEAIQKMPRQFSPQSLYNMMG---------EAYMRLNVV- 659
Query: 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGES 268
+EAE +Y + P H Y +LL G AE Y+ A DP G
Sbjct: 660 ------SEAEHWYTESLKSKPDHIPAHLTYGKLLTLTGRKNEAERYFLKAIQLDPNKGNC 713
Query: 269 WMQYAKLVWE 278
+M Y + + E
Sbjct: 714 YMHYGQFLLE 723
>sp|Q9VF81|TMTC4_DROME Transmembrane and TPR repeat-containing protein CG5038
OS=Drosophila melanogaster GN=CG5038 PE=1 SV=1
Length = 705
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
++ +A ++Y R I+ YP + L N L ++ G L AE+Y A A P +WM
Sbjct: 459 NNTKAFQHYHRAIELYPNYESALMNLGNLYREHGQLSTAEEYIRLALQAYPAFPAAWM 516
>sp|O60184|CYC8_SCHPO General transcriptional corepressor ssn6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ssn6 PE=1 SV=1
Length = 1102
Score = 35.4 bits (80), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 27/184 (14%)
Query: 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAED----YYNHATMADPGDGESWMQY 272
A+E Y+R++ E P H +L+ L ++ + +D Y + AD D +SW
Sbjct: 531 AKEAYERVLAETPNHAKVLQQLGWLCHQQSSSFTNQDLAIQYLTKSLEADDTDAQSWYLI 590
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
+ + + ++A +++A ++ + +++
Sbjct: 591 GR-CYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQI------------------ 631
Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392
+ A + +SRAI NP E+ L H+ AL ++RA + P +
Sbjct: 632 ----NQYQDALDAYSRAIRLNPYISEVWYDLGTLYESCHNQISDALDAYQRAAELDPTNP 687
Query: 393 HVLA 396
H+ A
Sbjct: 688 HIKA 691
>sp|Q9LEM8|NAC2_CHLRE PsbD mRNA maturation factor Nac2, chloroplastic OS=Chlamydomonas
reinhardtii GN=NAC2 PE=1 SV=1
Length = 1385
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA 397
+LE A+ Y RA + D ++ + ++ L D DKA FERA+ A P ++ ++
Sbjct: 1000 NLELAKGYCQRAYALDRTDKQLFLIWPRVEAGLG-DRDKARLLFERALDAHPLNTKIINM 1058
Query: 398 YACFLWETEEDEDDSKSSDQFQQVAPIRQG 427
YA F E + ++ D+ Q+ P+ G
Sbjct: 1059 YARFEAEEGSYREAAELYDRALQIDPLSPG 1088
>sp|O67178|Y1088_AQUAE Uncharacterized protein aq_1088 OS=Aquifex aeolicus (strain VF5)
GN=aq_1088 PE=3 SV=1
Length = 761
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH-DHDKALCYFERAVQASP 389
S+G LE A+ Y+ RA+ NP EI+ Y V L+ + +KAL FERA++ P
Sbjct: 115 SQGKLEEAQHYWERALSLNPNKVEIL--YNLGVLHLNKGELEKALDLFERALRLKP 168
>sp|Q12381|PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp1 PE=1 SV=1
Length = 906
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 27/193 (13%)
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
D+ A + + + YP + L Q+ + K + A D Y T P W+
Sbjct: 658 LDEKDRALQLLENALKIYPHYDKLYMMKGQIFEDKEQIELARDAYLAGTKVCPYSIPLWL 717
Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330
AKL E + RA F+RA + P++ FLW E ++
Sbjct: 718 LLAKL--EEKQSVIRARVVFDRAKVKNPKNE--------FLWLELIKMELRAGNISQVRA 767
Query: 331 LPIQSKGDLEGAEEYFSRAILANP----------------GDGEIMSQYAKLVWELHHDH 374
++ + + ++ AI P G+ ++ A+++W L
Sbjct: 768 ALAKALQECPSSGLLWTEAIWLEPRAQRKTRATDALRKCEGNAHLLCTIARMLW-LEKKA 826
Query: 375 DKALCYFERAVQA 387
DKA +F +AV+A
Sbjct: 827 DKARSWFLKAVKA 839
>sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
OS=Caenorhabditis elegans GN=ogt-1 PE=1 SV=2
Length = 1151
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 67/179 (37%), Gaps = 26/179 (14%)
Query: 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276
A + YK+ ID P P N A L++KG + AE Y A P
Sbjct: 382 AIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAEQMYMKALELCPT------------ 429
Query: 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336
H D L +R + I A +L +E E A +L Q +
Sbjct: 430 ---HADSQNNLANIKR------EQGKIEDATRLYLKALEIYPEFAAAHSNLASIL--QQQ 478
Query: 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADSH 393
G L A ++ AI P + S + E+ D A+ + RA+Q +P AD+H
Sbjct: 479 GKLNDAILHYKEAIRIAPTFADAYSNMGNTLKEM-GDSSAAIACYNRAIQINPAFADAH 536
>sp|Q58208|Y798_METJA TPR repeat-containing protein MJ0798 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0798 PE=4 SV=1
Length = 334
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 344 EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399
+YF + + NP D E + +L +E D +KA+ YF++A++ P D ++ A
Sbjct: 190 KYFEKVLELNPNDVEALEYLGELYYE--EDCEKAINYFKKALELKPDDIDLILKVA 243
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP-----IQSKGDL- 339
A+ YFE+A+ + L + M D+ K E+ +++ P ++ G+L
Sbjct: 154 AIKYFEKASEKDRNNYKALFGLGKSYYLMSDNKNSIKYFEKVLELNPNDVEALEYLGELY 213
Query: 340 -----EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
E A YF +A+ P D +++ + A ++L + AL YFE+A++ +P
Sbjct: 214 YEEDCEKAINYFKKALELKPDDIDLILKVAFTYFKLKK-YKHALKYFEKALKLNP 267
>sp|Q1BFP0|TRMB_MYCSS tRNA (guanine-N(7)-)-methyltransferase OS=Mycobacterium sp. (strain
MCS) GN=trmB PE=3 SV=1
Length = 275
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA-TMADPGDGESW 269
F D ++KR + P + A L+ G L+ A D+ +A +A GD E
Sbjct: 180 FPDPWPKARHHKRRL----LQPSTVALIADRLRPGGILHAATDHAGYAEQIAAVGDAEPL 235
Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313
++ L +L R +T +ER ALA P A LWE
Sbjct: 236 LRRVDLTDDLPISVRRPVTKYERKALAGPD-------VAELLWE 272
>sp|A1U992|TRMB_MYCSK tRNA (guanine-N(7)-)-methyltransferase OS=Mycobacterium sp. (strain
KMS) GN=trmB PE=3 SV=1
Length = 275
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA-TMADPGDGESW 269
F D ++KR + P + A L+ G L+ A D+ +A +A GD E
Sbjct: 180 FPDPWPKARHHKRRL----LQPSTVALIADRLRPGGILHAATDHAGYAEQIAAVGDAEPL 235
Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313
++ L +L R +T +ER ALA P A LWE
Sbjct: 236 LRRVDLTDDLPISVRRPVTKYERKALAGPD-------VAELLWE 272
>sp|Q58350|Y940_METJA TPR repeat-containing protein MJ0940 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0940 PE=4 SV=1
Length = 318
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRN--YAQLLQKKGDLYRAEDYYNHATMAD 262
LI+ + EA +YY+++IDE + ++R Y L K D +AE Y
Sbjct: 194 LILNRIGNCDEALKYYEKLIDELNVTWIEVIREAIYLSFLFNKLD--KAEKYIEMGLKLR 251
Query: 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308
P D W KL +E AL Y+ +A P + L A A
Sbjct: 252 PDDASLWYFKGKL-YEKQNKFEEALKYYNKAIQLMPHHTKALLAKA 296
>sp|Q13099|IFT88_HUMAN Intraflagellar transport protein 88 homolog OS=Homo sapiens
GN=IFT88 PE=2 SV=2
Length = 833
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE--S 268
++ ++A E+ +++ P P +L +L ++GD +A YY + P + E
Sbjct: 574 MENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIE 633
Query: 269 WMQYAKL---VWELHRDQHRALTYFERAALAAP-QDSNILAAYACF 310
W+ + WE +A+ YFERA+L P Q L +CF
Sbjct: 634 WLGAYYIDTQFWE------KAIQYFERASLIQPTQVKWQLMVASCF 673
>sp|Q17A75|FICD_AEDAE Adenosine monophosphate-protein transferase FICD homolog OS=Aedes
aegypti GN=AAEL005383 PE=3 SV=1
Length = 499
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMAD 262
V + M +A ++ + P HP +L Y + L+ + D+ RA+ YY A +
Sbjct: 132 VAIEMKTMGKDDKAARLFQHALALSPKHPEILTKYGEFLEHNQQDVVRADHYYYQALTVN 191
Query: 263 PGDGESWMQYAKLVWEL-HRDQHRALTYFERA-----ALAAPQDSNI 303
P E+ + + H DQ R FER AL++ D+N+
Sbjct: 192 PSHSEALANRQRTAQIVEHLDQKR----FERLDQKRDALSSVSDTNM 234
>sp|Q750X3|CLF1_ASHGO Pre-mRNA-splicing factor CLF1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CLF1 PE=3
SV=1
Length = 683
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 250 RAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308
R + A + D W++YA +E RD RA + FERA AP D + Y
Sbjct: 44 RKRSEFEEALKRNRLDVRQWLRYAAFEYE-QRDMRRARSVFERALAVAPGDVVVWLRYV 101
>sp|Q9STS3|CDC23_ARATH Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana
GN=APC8 PE=1 SV=1
Length = 579
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 24/142 (16%)
Query: 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA-C 309
A D Y A +P D +W + +E+ AL YF ++ P DS + A A C
Sbjct: 392 AIDAYRRAVDINPTDYRAWYGLGQ-AYEMMGMPFYALHYFRKSIFFLPNDSRLWIAMAKC 450
Query: 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369
+ Q E + +L E A + + RA+ +G ++Q AKL +
Sbjct: 451 Y-------------QTEQLYML--------EEAIKCYKRAVNCTDTEGIALNQLAKLHQK 489
Query: 370 LHHDHDKALCYFERAVQASPAD 391
L + + A YFE+ ++ A+
Sbjct: 490 LGRNEEAAY-YFEKDLERMDAE 510
>sp|Q13X51|MUTS_BURXL DNA mismatch repair protein MutS OS=Burkholderia xenovorans (strain
LB400) GN=mutS PE=3 SV=2
Length = 894
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAED------------YYNH 257
FD A A + ++ CH L +Y +L Q + +A + + H
Sbjct: 719 TFDGLALAWAIARHLLAHNGCHTLFATHYFELTQLPAEFPQAANVHLSAVEHGHGIVFLH 778
Query: 258 ATMADPGDGESWMQYAKLVW---ELHRDQHRALTYFER--AALAAPQDSNILAAYACFLW 312
A P + +Q A+L + R + L Y E+ AA APQ ++ AA L
Sbjct: 779 AVSEGPANQSYGLQVAQLAGVPNAVIRAARKHLAYLEQQSAAQPAPQ-LDLFAAPMPMLL 837
Query: 313 EMEDDGEDDKAQ 324
E DD D KA+
Sbjct: 838 EDADDERDSKAE 849
>sp|A7SVT1|FICD_NEMVE Adenosine monophosphate-protein transferase FICD homolog
OS=Nematostella vectensis GN=v1g194069 PE=3 SV=1
Length = 427
Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGES 268
++A + +++ + P HP +L Y + L++ D+ +AE YN A A+P D +
Sbjct: 94 SKAVKLFQQAVSLAPHHPEILLQYGEFLEQH-DVVQAEHLYNRALTANPLDSRA 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,082,293
Number of Sequences: 539616
Number of extensions: 7871210
Number of successful extensions: 18056
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 17774
Number of HSP's gapped (non-prelim): 366
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)