Query 013800
Match_columns 436
No_of_seqs 629 out of 4071
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.4E-32 3E-37 267.4 22.5 247 181-430 236-494 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.1E-30 2.4E-35 254.2 19.4 255 178-435 199-466 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-23 3E-28 221.1 30.0 247 179-427 310-577 (615)
4 TIGR00990 3a0801s09 mitochondr 99.9 4.2E-23 9.1E-28 217.5 30.7 245 177-425 141-500 (615)
5 PRK15174 Vi polysaccharide exp 99.9 1.2E-22 2.6E-27 214.3 32.4 246 178-427 57-319 (656)
6 PRK15174 Vi polysaccharide exp 99.9 6.3E-22 1.4E-26 208.8 31.6 244 178-425 91-351 (656)
7 KOG1126 DNA-binding cell divis 99.9 8.3E-23 1.8E-27 202.2 17.4 208 196-427 419-626 (638)
8 KOG0547 Translocase of outer m 99.9 8.3E-22 1.8E-26 188.3 20.7 222 201-423 329-568 (606)
9 PRK11447 cellulose synthase su 99.9 5.2E-21 1.1E-25 214.4 30.8 213 177-393 283-530 (1157)
10 PRK11447 cellulose synthase su 99.9 5.2E-21 1.1E-25 214.4 30.2 245 178-425 366-704 (1157)
11 TIGR02917 PEP_TPR_lipo putativ 99.9 3.1E-20 6.7E-25 202.8 32.1 242 181-426 551-804 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 3.6E-20 7.7E-25 202.3 32.1 243 178-424 582-835 (899)
13 PRK09782 bacteriophage N4 rece 99.9 6.1E-20 1.3E-24 198.7 31.9 241 182-428 460-713 (987)
14 PRK11788 tetratricopeptide rep 99.9 7.5E-20 1.6E-24 182.3 30.2 248 178-429 50-319 (389)
15 PRK11788 tetratricopeptide rep 99.9 6.4E-20 1.4E-24 182.8 29.7 233 200-434 37-291 (389)
16 TIGR02521 type_IV_pilW type IV 99.9 1.1E-19 2.5E-24 166.1 27.6 202 198-423 31-234 (234)
17 KOG1126 DNA-binding cell divis 99.9 4E-21 8.8E-26 190.3 17.4 230 181-435 337-601 (638)
18 PRK12370 invasion protein regu 99.9 5.4E-20 1.2E-24 191.0 25.0 189 212-424 275-473 (553)
19 PRK11189 lipoprotein NlpI; Pro 99.9 2.2E-19 4.7E-24 172.0 25.7 217 184-429 47-274 (296)
20 PRK12370 invasion protein regu 99.9 1.5E-19 3.2E-24 187.8 26.4 214 181-421 279-502 (553)
21 PRK09782 bacteriophage N4 rece 99.8 4.4E-19 9.6E-24 192.0 28.3 222 201-426 512-745 (987)
22 COG3063 PilF Tfp pilus assembl 99.8 5.6E-19 1.2E-23 154.9 23.5 205 199-427 36-242 (250)
23 KOG1155 Anaphase-promoting com 99.8 2.4E-19 5.2E-24 170.6 21.7 208 199-430 331-545 (559)
24 KOG1125 TPR repeat-containing 99.8 1.2E-19 2.6E-24 177.3 18.8 221 201-424 288-530 (579)
25 PRK10049 pgaA outer membrane p 99.8 2.2E-17 4.7E-22 177.8 31.9 246 178-427 64-428 (765)
26 KOG2076 RNA polymerase III tra 99.8 8.8E-18 1.9E-22 171.3 26.7 219 199-419 140-510 (895)
27 KOG0547 Translocase of outer m 99.8 3E-18 6.5E-23 164.1 21.9 219 177-398 340-577 (606)
28 PLN02789 farnesyltranstransfer 99.8 1.1E-17 2.4E-22 160.3 24.5 215 199-435 38-265 (320)
29 KOG1173 Anaphase-promoting com 99.8 5.3E-18 1.1E-22 165.2 21.7 211 196-430 310-527 (611)
30 KOG1155 Anaphase-promoting com 99.8 1.3E-17 2.8E-22 158.9 22.5 195 203-421 267-495 (559)
31 PRK10049 pgaA outer membrane p 99.8 6.1E-17 1.3E-21 174.3 30.4 249 178-430 98-465 (765)
32 KOG0548 Molecular co-chaperone 99.8 2.2E-17 4.9E-22 160.3 24.1 249 178-430 17-464 (539)
33 KOG1129 TPR repeat-containing 99.8 5.3E-18 1.1E-22 155.1 17.4 225 202-429 227-466 (478)
34 PF13429 TPR_15: Tetratricopep 99.8 1.6E-18 3.5E-23 165.0 14.6 217 178-421 59-277 (280)
35 PF13429 TPR_15: Tetratricopep 99.8 5.9E-19 1.3E-23 168.0 10.7 222 205-430 15-252 (280)
36 COG3063 PilF Tfp pilus assembl 99.8 2.4E-17 5.1E-22 144.7 19.7 167 233-423 36-204 (250)
37 TIGR02521 type_IV_pilW type IV 99.8 1.2E-16 2.6E-21 146.0 24.9 173 231-427 30-204 (234)
38 PRK10747 putative protoheme IX 99.8 6.1E-16 1.3E-20 154.4 29.4 215 205-422 125-391 (398)
39 KOG0624 dsRNA-activated protei 99.8 5.1E-17 1.1E-21 149.6 19.6 230 199-430 107-379 (504)
40 KOG2002 TPR-containing nuclear 99.8 1.6E-16 3.5E-21 163.2 24.7 248 181-430 148-418 (1018)
41 TIGR00540 hemY_coli hemY prote 99.8 9.2E-16 2E-20 153.8 29.2 240 178-421 99-399 (409)
42 KOG1125 TPR repeat-containing 99.8 4.4E-17 9.5E-22 159.5 18.7 209 180-413 302-563 (579)
43 PLN02789 farnesyltranstransfer 99.8 3.1E-16 6.7E-21 150.4 23.8 228 178-423 52-304 (320)
44 TIGR00540 hemY_coli hemY prote 99.7 1.3E-15 2.8E-20 152.7 27.5 232 201-434 87-379 (409)
45 PRK11189 lipoprotein NlpI; Pro 99.7 4.6E-16 1E-20 149.0 21.6 200 178-406 79-285 (296)
46 KOG2003 TPR repeat-containing 99.7 4.5E-16 9.8E-21 147.9 20.1 226 178-406 471-708 (840)
47 KOG1173 Anaphase-promoting com 99.7 7.9E-16 1.7E-20 150.2 21.9 236 198-435 244-499 (611)
48 KOG0624 dsRNA-activated protei 99.7 1.4E-15 3E-20 140.2 21.8 216 200-427 40-258 (504)
49 KOG2002 TPR-containing nuclear 99.7 1.2E-15 2.5E-20 157.0 23.7 253 181-436 112-387 (1018)
50 KOG1840 Kinesin light chain [C 99.7 3.6E-15 7.7E-20 149.4 24.6 223 197-421 198-479 (508)
51 TIGR03302 OM_YfiO outer membra 99.7 5.5E-15 1.2E-19 136.9 22.3 180 228-423 29-234 (235)
52 PRK14574 hmsH outer membrane p 99.7 2.6E-14 5.6E-19 152.4 29.9 249 178-430 83-488 (822)
53 PRK15359 type III secretion sy 99.7 1.6E-15 3.5E-20 129.2 16.2 126 218-369 13-138 (144)
54 TIGR03302 OM_YfiO outer membra 99.7 1E-14 2.2E-19 135.2 22.9 187 197-389 32-234 (235)
55 KOG1174 Anaphase-promoting com 99.7 1.1E-14 2.3E-19 137.4 22.5 232 196-430 230-509 (564)
56 PRK10747 putative protoheme IX 99.7 3.5E-14 7.7E-19 141.7 28.0 229 200-434 86-370 (398)
57 KOG0550 Molecular chaperone (D 99.7 7.6E-16 1.6E-20 145.2 13.9 244 178-424 64-353 (486)
58 KOG0495 HAT repeat protein [RN 99.7 1.6E-14 3.5E-19 142.9 23.1 243 178-428 633-887 (913)
59 PRK15359 type III secretion sy 99.7 2.3E-15 5E-20 128.3 15.1 127 252-405 13-139 (144)
60 cd05804 StaR_like StaR_like; a 99.6 6.3E-14 1.4E-18 137.9 23.8 204 196-423 4-217 (355)
61 KOG4162 Predicted calmodulin-b 99.6 8.3E-14 1.8E-18 140.5 23.9 211 214-426 460-788 (799)
62 COG2956 Predicted N-acetylgluc 99.6 1.1E-13 2.4E-18 127.0 22.5 227 177-424 49-281 (389)
63 KOG1129 TPR repeat-containing 99.6 3.7E-15 8E-20 136.7 12.6 220 178-401 238-472 (478)
64 KOG0548 Molecular co-chaperone 99.6 1.5E-13 3.3E-18 133.9 23.1 109 202-311 6-114 (539)
65 PRK10370 formate-dependent nit 99.6 4.9E-14 1.1E-18 126.6 18.3 124 245-392 52-178 (198)
66 KOG1174 Anaphase-promoting com 99.6 1.1E-13 2.4E-18 130.5 20.8 215 212-427 212-473 (564)
67 PRK14574 hmsH outer membrane p 99.6 2.7E-13 5.9E-18 144.6 25.7 197 196-417 32-228 (822)
68 PRK10370 formate-dependent nit 99.6 1.1E-13 2.4E-18 124.2 19.4 122 282-425 54-177 (198)
69 PRK15179 Vi polysaccharide bio 99.6 1.3E-13 2.8E-18 144.6 22.2 158 215-396 69-226 (694)
70 KOG0495 HAT repeat protein [RN 99.6 8.7E-13 1.9E-17 130.8 26.2 243 183-427 501-754 (913)
71 COG5010 TadD Flp pilus assembl 99.6 2E-13 4.2E-18 122.7 19.6 182 213-419 48-229 (257)
72 KOG1840 Kinesin light chain [C 99.6 2.8E-13 6.2E-18 135.8 22.0 198 228-427 195-448 (508)
73 COG2956 Predicted N-acetylgluc 99.6 4.4E-12 9.5E-17 116.6 27.6 228 177-429 64-319 (389)
74 KOG0550 Molecular chaperone (D 99.6 4E-14 8.6E-19 133.7 13.6 232 202-435 53-331 (486)
75 PRK15179 Vi polysaccharide bio 99.6 7.5E-13 1.6E-17 138.9 23.4 149 251-423 71-219 (694)
76 KOG2076 RNA polymerase III tra 99.5 2.1E-12 4.4E-17 132.6 25.2 237 178-417 154-551 (895)
77 PRK14720 transcript cleavage f 99.5 5.9E-13 1.3E-17 140.7 22.0 220 191-421 25-283 (906)
78 KOG2003 TPR repeat-containing 99.5 1.1E-12 2.5E-17 125.0 20.6 203 178-384 505-719 (840)
79 COG4783 Putative Zn-dependent 99.5 1.2E-12 2.5E-17 126.8 20.3 160 229-429 303-463 (484)
80 TIGR02552 LcrH_SycD type III s 99.5 6.4E-13 1.4E-17 111.8 16.2 117 219-358 4-120 (135)
81 TIGR02552 LcrH_SycD type III s 99.5 1.1E-12 2.5E-17 110.3 15.7 118 253-394 4-121 (135)
82 KOG3060 Uncharacterized conser 99.5 9.7E-12 2.1E-16 110.9 21.2 176 203-401 57-234 (289)
83 KOG1127 TPR repeat-containing 99.5 3.6E-13 7.8E-18 138.8 13.3 246 178-427 473-885 (1238)
84 COG5010 TadD Flp pilus assembl 99.5 5.3E-12 1.1E-16 113.5 18.2 173 186-384 56-228 (257)
85 KOG1156 N-terminal acetyltrans 99.4 2.3E-11 4.9E-16 121.0 23.0 230 196-427 39-289 (700)
86 COG3071 HemY Uncharacterized e 99.4 1.6E-10 3.4E-15 109.4 27.3 240 178-421 99-390 (400)
87 KOG0553 TPR repeat-containing 99.4 2.4E-12 5.2E-17 117.8 14.0 108 200-308 83-190 (304)
88 PLN03218 maturation of RBCL 1; 99.4 1.6E-10 3.5E-15 126.8 30.5 218 198-420 507-747 (1060)
89 PLN03218 maturation of RBCL 1; 99.4 2.3E-10 4.9E-15 125.6 31.5 220 198-421 472-713 (1060)
90 KOG3060 Uncharacterized conser 99.4 6E-11 1.3E-15 105.9 21.5 189 212-424 26-223 (289)
91 KOG0553 TPR repeat-containing 99.4 2.1E-12 4.5E-17 118.2 12.5 93 235-328 84-176 (304)
92 PLN03081 pentatricopeptide (PP 99.4 3E-11 6.4E-16 129.6 23.2 231 197-435 289-538 (697)
93 KOG1156 N-terminal acetyltrans 99.4 3E-11 6.4E-16 120.2 21.2 222 205-428 14-255 (700)
94 PLN03081 pentatricopeptide (PP 99.4 4.2E-11 9.2E-16 128.4 23.2 237 178-421 305-557 (697)
95 cd05804 StaR_like StaR_like; a 99.4 2.9E-11 6.3E-16 118.9 20.2 176 228-424 2-180 (355)
96 KOG1128 Uncharacterized conser 99.4 4.1E-12 8.9E-17 127.8 13.8 197 199-426 425-621 (777)
97 COG4783 Putative Zn-dependent 99.4 6.2E-11 1.3E-15 115.0 20.8 153 197-355 305-457 (484)
98 KOG1127 TPR repeat-containing 99.4 4.5E-11 9.7E-16 123.6 20.2 219 201-421 402-659 (1238)
99 PRK15363 pathogenicity island 99.4 1.4E-11 3.1E-16 103.8 13.5 118 292-432 25-146 (157)
100 PF12569 NARP1: NMDA receptor- 99.4 2.2E-10 4.8E-15 116.3 23.9 220 201-421 7-291 (517)
101 KOG4162 Predicted calmodulin-b 99.3 2.9E-10 6.2E-15 115.3 21.6 207 183-392 464-788 (799)
102 PRK15363 pathogenicity island 99.3 1.1E-10 2.5E-15 98.4 15.7 102 229-353 32-133 (157)
103 KOG1130 Predicted G-alpha GTPa 99.3 1.3E-11 2.9E-16 116.6 10.6 240 182-422 36-345 (639)
104 PLN03088 SGT1, suppressor of 99.3 6.7E-11 1.4E-15 116.1 16.1 113 201-314 5-117 (356)
105 PLN03088 SGT1, suppressor of 99.3 9.7E-11 2.1E-15 114.9 16.8 113 235-370 5-117 (356)
106 KOG1915 Cell cycle control pro 99.3 1.1E-09 2.4E-14 105.5 23.2 254 178-432 259-547 (677)
107 PLN03077 Protein ECB2; Provisi 99.3 7E-10 1.5E-14 121.8 24.8 227 199-436 425-702 (857)
108 PF12569 NARP1: NMDA receptor- 99.3 1.4E-09 3E-14 110.6 23.9 242 178-422 19-335 (517)
109 PRK14720 transcript cleavage f 99.3 4.1E-10 8.9E-15 119.5 20.3 177 227-430 26-261 (906)
110 KOG2376 Signal recognition par 99.2 9E-10 1.9E-14 108.8 20.0 214 207-426 21-258 (652)
111 KOG1130 Predicted G-alpha GTPa 99.2 5.1E-11 1.1E-15 112.7 10.9 217 205-423 24-306 (639)
112 COG4235 Cytochrome c biogenesi 99.2 7.7E-10 1.7E-14 102.1 17.5 120 214-355 138-259 (287)
113 KOG1128 Uncharacterized conser 99.2 8.3E-10 1.8E-14 111.5 16.1 181 202-422 402-583 (777)
114 CHL00033 ycf3 photosystem I as 99.2 1.4E-09 3.1E-14 95.2 15.9 129 212-356 13-153 (168)
115 PLN03077 Protein ECB2; Provisi 99.2 9E-09 1.9E-13 113.1 25.3 231 178-421 439-720 (857)
116 PRK10866 outer membrane biogen 99.2 1.5E-08 3.4E-13 93.8 23.0 105 198-302 32-159 (243)
117 PF13525 YfiO: Outer membrane 99.1 8E-09 1.7E-13 93.3 20.4 168 197-372 4-193 (203)
118 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.8E-09 3.9E-14 88.2 14.6 106 199-305 3-114 (119)
119 PRK11906 transcriptional regul 99.1 5E-09 1.1E-13 102.4 19.8 161 236-419 259-434 (458)
120 COG4785 NlpI Lipoprotein NlpI, 99.1 5.3E-09 1.1E-13 91.5 17.7 196 181-421 64-266 (297)
121 KOG3785 Uncharacterized conser 99.1 5.7E-09 1.2E-13 97.4 19.0 151 178-329 37-213 (557)
122 PRK10153 DNA-binding transcrip 99.1 4E-09 8.6E-14 107.9 19.5 144 226-393 331-488 (517)
123 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.7E-09 5.9E-14 87.1 14.9 103 233-358 3-111 (119)
124 PRK04841 transcriptional regul 99.1 1.7E-08 3.7E-13 111.6 25.8 245 178-424 467-763 (903)
125 COG4235 Cytochrome c biogenesi 99.1 3.2E-09 6.9E-14 98.1 16.1 124 248-392 138-261 (287)
126 PF04733 Coatomer_E: Coatomer 99.1 4.8E-10 1E-14 106.5 10.9 189 212-429 80-273 (290)
127 PRK11906 transcriptional regul 99.1 4E-09 8.8E-14 103.1 17.4 161 202-386 259-435 (458)
128 KOG3785 Uncharacterized conser 99.1 2.1E-08 4.5E-13 93.7 21.1 203 210-418 34-245 (557)
129 PRK02603 photosystem I assembl 99.1 2.4E-09 5.2E-14 94.1 14.3 85 230-315 33-120 (172)
130 cd00189 TPR Tetratricopeptide 99.1 1.4E-09 3.1E-14 83.5 11.3 99 200-299 2-100 (100)
131 cd00189 TPR Tetratricopeptide 99.1 2.3E-09 5E-14 82.3 11.9 93 331-424 8-100 (100)
132 PRK10866 outer membrane biogen 99.1 6.3E-08 1.4E-12 89.8 23.4 181 230-417 30-237 (243)
133 PF13525 YfiO: Outer membrane 99.1 2.5E-08 5.4E-13 90.1 20.3 166 231-412 4-198 (203)
134 CHL00033 ycf3 photosystem I as 99.1 5E-09 1.1E-13 91.8 15.2 121 247-391 14-153 (168)
135 COG0457 NrfG FOG: TPR repeat [ 99.1 1.3E-07 2.9E-12 84.5 25.0 203 198-424 59-268 (291)
136 PF13414 TPR_11: TPR repeat; P 99.1 7.7E-10 1.7E-14 81.5 8.5 68 231-298 2-69 (69)
137 PF13414 TPR_11: TPR repeat; P 99.1 9.1E-10 2E-14 81.1 8.3 68 355-423 1-69 (69)
138 KOG1915 Cell cycle control pro 99.1 8.5E-08 1.9E-12 92.7 23.5 145 177-325 87-231 (677)
139 PF04733 Coatomer_E: Coatomer 99.0 1.8E-09 3.8E-14 102.6 12.2 170 199-395 103-273 (290)
140 PRK10153 DNA-binding transcrip 99.0 1.4E-08 3E-13 103.9 19.0 155 260-430 331-491 (517)
141 PRK02603 photosystem I assembl 99.0 1.9E-08 4.1E-13 88.4 16.1 118 264-425 33-153 (172)
142 KOG4340 Uncharacterized conser 99.0 1.5E-08 3.3E-13 92.6 15.4 205 209-415 21-264 (459)
143 KOG4648 Uncharacterized conser 99.0 2.7E-10 5.9E-15 105.6 4.1 222 202-426 101-335 (536)
144 KOG4340 Uncharacterized conser 99.0 1.8E-08 3.8E-13 92.2 15.5 183 242-430 20-220 (459)
145 PF12895 Apc3: Anaphase-promot 99.0 1.4E-09 3.1E-14 83.5 7.0 82 335-418 1-84 (84)
146 PF09976 TPR_21: Tetratricopep 99.0 4.3E-08 9.3E-13 83.6 16.5 114 282-419 26-145 (145)
147 KOG0543 FKBP-type peptidyl-pro 99.0 2.5E-08 5.4E-13 95.4 15.7 89 331-420 265-354 (397)
148 PF14938 SNAP: Soluble NSF att 98.9 4.9E-08 1.1E-12 92.9 17.9 185 213-430 30-234 (282)
149 PF12895 Apc3: Anaphase-promot 98.9 2.4E-09 5.3E-14 82.2 6.9 81 211-293 2-84 (84)
150 KOG0543 FKBP-type peptidyl-pro 98.9 2.6E-08 5.6E-13 95.3 15.1 73 357-430 257-329 (397)
151 PF13432 TPR_16: Tetratricopep 98.9 2.9E-09 6.3E-14 77.4 6.7 62 204-265 3-64 (65)
152 COG3071 HemY Uncharacterized e 98.9 5.9E-07 1.3E-11 85.5 23.5 205 177-387 132-390 (400)
153 PRK15331 chaperone protein Sic 98.9 1.4E-08 3E-13 86.2 11.2 101 331-433 45-145 (165)
154 PF13432 TPR_16: Tetratricopep 98.9 5.6E-09 1.2E-13 75.9 7.4 65 236-301 1-65 (65)
155 PF09976 TPR_21: Tetratricopep 98.9 1.1E-07 2.3E-12 81.1 16.5 117 244-385 23-145 (145)
156 KOG2376 Signal recognition par 98.9 1E-06 2.2E-11 87.6 23.7 212 202-418 83-402 (652)
157 PRK04841 transcriptional regul 98.8 9.5E-07 2.1E-11 97.9 26.1 220 201-422 455-721 (903)
158 COG0457 NrfG FOG: TPR repeat [ 98.8 2E-06 4.4E-11 76.7 23.7 190 211-424 36-234 (291)
159 PRK10803 tol-pal system protei 98.8 2E-07 4.3E-12 87.2 17.3 103 267-392 143-251 (263)
160 PF14938 SNAP: Soluble NSF att 98.8 6.3E-08 1.4E-12 92.2 14.2 200 199-422 36-267 (282)
161 PRK10803 tol-pal system protei 98.8 1.2E-07 2.6E-12 88.7 15.5 97 333-430 153-255 (263)
162 PRK15331 chaperone protein Sic 98.8 9.5E-08 2.1E-12 81.1 13.1 76 232-308 37-112 (165)
163 KOG1070 rRNA processing protei 98.8 1.6E-06 3.4E-11 93.5 24.4 201 196-421 1456-1663(1710)
164 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 2E-07 4.4E-12 91.6 16.6 117 239-382 176-292 (395)
165 PF14559 TPR_19: Tetratricopep 98.8 1.9E-08 4.1E-13 73.7 6.6 66 209-274 2-67 (68)
166 COG4700 Uncharacterized protei 98.8 1.2E-06 2.6E-11 75.2 18.2 152 208-385 66-220 (251)
167 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 2.4E-07 5.3E-12 91.0 15.9 112 281-418 183-294 (395)
168 COG4105 ComL DNA uptake lipopr 98.7 5.3E-06 1.1E-10 75.4 22.3 185 199-392 35-238 (254)
169 PF14559 TPR_19: Tetratricopep 98.7 3.7E-08 8E-13 72.1 6.9 67 334-401 2-68 (68)
170 PF12688 TPR_5: Tetratrico pep 98.7 4.1E-07 8.8E-12 74.3 13.5 74 234-308 3-82 (120)
171 KOG4234 TPR repeat-containing 98.7 2.6E-07 5.6E-12 80.1 11.8 108 200-308 97-209 (271)
172 KOG4648 Uncharacterized conser 98.7 4.7E-08 1E-12 91.0 7.4 109 235-366 100-208 (536)
173 PF12688 TPR_5: Tetratrico pep 98.7 6.6E-07 1.4E-11 73.1 13.2 90 331-421 9-104 (120)
174 PF13371 TPR_9: Tetratricopept 98.7 1.4E-07 3E-12 70.1 8.6 67 206-272 3-69 (73)
175 KOG4234 TPR repeat-containing 98.7 2.1E-07 4.5E-12 80.7 10.4 99 331-430 103-206 (271)
176 COG4700 Uncharacterized protei 98.6 6.2E-06 1.4E-10 70.9 18.6 158 243-426 67-231 (251)
177 PF13371 TPR_9: Tetratricopept 98.6 2.8E-07 6E-12 68.5 9.1 69 331-400 3-71 (73)
178 KOG1941 Acetylcholine receptor 98.6 4.5E-06 9.6E-11 78.6 18.1 220 200-421 85-360 (518)
179 KOG2047 mRNA splicing factor [ 98.6 1.4E-05 2.9E-10 80.5 22.5 49 179-227 229-277 (835)
180 COG4785 NlpI Lipoprotein NlpI, 98.6 2.5E-06 5.4E-11 75.0 15.0 174 186-390 88-269 (297)
181 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 3E-07 6.5E-12 90.0 9.2 73 352-425 70-146 (453)
182 PF06552 TOM20_plant: Plant sp 98.5 9.9E-07 2.1E-11 75.7 11.2 107 283-401 7-123 (186)
183 KOG4555 TPR repeat-containing 98.5 2.6E-06 5.7E-11 68.8 12.3 96 331-427 51-150 (175)
184 COG3898 Uncharacterized membra 98.5 9.2E-05 2E-09 70.6 24.4 214 207-422 163-393 (531)
185 KOG3081 Vesicle coat complex C 98.5 2.7E-05 5.8E-10 70.8 19.4 160 204-392 114-276 (299)
186 KOG1070 rRNA processing protei 98.5 2.5E-05 5.4E-10 84.6 22.1 197 199-420 1498-1699(1710)
187 KOG1941 Acetylcholine receptor 98.5 8.4E-06 1.8E-10 76.8 16.3 198 201-422 46-276 (518)
188 KOG2053 Mitochondrial inherita 98.5 4.2E-05 9.2E-10 79.7 22.9 110 212-323 23-132 (932)
189 COG1729 Uncharacterized protei 98.5 4.9E-06 1.1E-10 76.3 14.4 107 201-308 144-256 (262)
190 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1E-06 2.2E-11 86.3 10.5 70 296-388 70-142 (453)
191 PF06552 TOM20_plant: Plant sp 98.4 3.9E-06 8.4E-11 72.1 12.0 107 249-366 8-123 (186)
192 PF05843 Suf: Suppressor of fo 98.4 8.2E-06 1.8E-10 77.5 15.3 134 234-390 3-139 (280)
193 KOG2047 mRNA splicing factor [ 98.4 2.3E-05 4.9E-10 78.9 18.7 198 199-419 388-613 (835)
194 KOG3081 Vesicle coat complex C 98.4 0.00013 2.8E-09 66.4 21.8 196 205-427 79-277 (299)
195 COG4105 ComL DNA uptake lipopr 98.4 0.00012 2.7E-09 66.6 21.9 178 231-425 33-237 (254)
196 PF13512 TPR_18: Tetratricopep 98.4 1.3E-05 2.8E-10 66.8 13.6 106 198-303 10-135 (142)
197 PF05843 Suf: Suppressor of fo 98.4 1E-05 2.2E-10 76.9 14.8 139 267-429 2-144 (280)
198 PF13512 TPR_18: Tetratricopep 98.4 1.9E-05 4.1E-10 65.8 14.0 99 331-430 18-137 (142)
199 KOG1586 Protein required for f 98.3 0.00011 2.4E-09 65.6 19.2 181 211-430 27-233 (288)
200 COG1729 Uncharacterized protei 98.3 1.8E-05 3.9E-10 72.6 14.9 104 235-361 144-253 (262)
201 PF04184 ST7: ST7 protein; In 98.3 5E-05 1.1E-09 74.8 18.1 161 210-395 180-383 (539)
202 PF13424 TPR_12: Tetratricopep 98.2 1.5E-06 3.3E-11 65.4 4.8 64 232-296 5-75 (78)
203 PF13424 TPR_12: Tetratricopep 98.2 1.5E-06 3.2E-11 65.4 4.6 67 354-421 2-75 (78)
204 KOG2796 Uncharacterized conser 98.2 6.7E-05 1.5E-09 68.0 15.6 123 268-392 179-320 (366)
205 KOG4555 TPR repeat-containing 98.2 3.5E-05 7.6E-10 62.4 12.0 96 205-301 50-149 (175)
206 KOG4642 Chaperone-dependent E3 98.2 6E-06 1.3E-10 73.6 7.9 93 204-297 16-108 (284)
207 KOG4642 Chaperone-dependent E3 98.2 8.9E-06 1.9E-10 72.6 8.9 90 331-421 18-107 (284)
208 KOG2610 Uncharacterized conser 98.2 9.7E-05 2.1E-09 69.2 15.7 159 237-419 108-274 (491)
209 PF04184 ST7: ST7 protein; In 98.1 0.00025 5.3E-09 70.1 18.6 176 244-427 180-381 (539)
210 KOG2471 TPR repeat-containing 98.1 0.00029 6.3E-09 69.1 18.7 80 199-278 284-381 (696)
211 KOG1585 Protein required for f 98.1 0.00079 1.7E-08 60.6 19.2 192 201-415 34-250 (308)
212 PF13428 TPR_14: Tetratricopep 98.1 9.1E-06 2E-10 53.8 5.3 42 233-274 2-43 (44)
213 KOG0376 Serine-threonine phosp 98.1 7.4E-06 1.6E-10 80.2 6.4 108 203-311 9-116 (476)
214 COG3898 Uncharacterized membra 98.0 0.0066 1.4E-07 58.3 24.6 184 204-390 90-295 (531)
215 KOG4507 Uncharacterized conser 98.0 0.0002 4.4E-09 71.5 15.2 96 331-427 615-711 (886)
216 KOG3617 WD40 and TPR repeat-co 98.0 0.00062 1.3E-08 70.6 18.5 165 204-385 806-994 (1416)
217 PF13428 TPR_14: Tetratricopep 98.0 1.9E-05 4E-10 52.3 5.3 43 357-400 1-43 (44)
218 KOG3617 WD40 and TPR repeat-co 98.0 0.0024 5.3E-08 66.4 22.4 217 199-418 859-1171(1416)
219 KOG0545 Aryl-hydrocarbon recep 98.0 7.3E-05 1.6E-09 67.1 10.2 104 199-303 179-300 (329)
220 KOG2796 Uncharacterized conser 97.9 0.00029 6.2E-09 64.0 13.8 134 200-356 179-319 (366)
221 KOG0545 Aryl-hydrocarbon recep 97.9 0.00011 2.5E-09 65.9 10.7 96 331-427 186-299 (329)
222 PF13431 TPR_17: Tetratricopep 97.9 1.6E-05 3.4E-10 49.4 3.4 32 221-252 2-33 (34)
223 KOG1586 Protein required for f 97.9 0.0037 8E-08 56.0 19.3 169 205-392 41-229 (288)
224 PF13431 TPR_17: Tetratricopep 97.8 2E-05 4.4E-10 48.9 3.3 32 346-378 2-33 (34)
225 KOG1258 mRNA processing protei 97.8 0.015 3.3E-07 58.9 25.1 98 331-429 305-403 (577)
226 PF13281 DUF4071: Domain of un 97.8 0.0023 5E-08 62.3 18.8 181 232-427 141-340 (374)
227 COG3118 Thioredoxin domain-con 97.8 0.0014 2.9E-08 61.0 16.2 53 206-258 142-194 (304)
228 KOG0376 Serine-threonine phosp 97.8 3.6E-05 7.8E-10 75.5 6.3 107 237-366 9-115 (476)
229 KOG0530 Protein farnesyltransf 97.8 0.0097 2.1E-07 54.3 20.9 194 207-402 52-269 (318)
230 KOG1585 Protein required for f 97.7 0.0028 6.1E-08 57.2 16.6 171 233-422 32-220 (308)
231 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00024 5.3E-09 66.5 10.0 101 331-432 89-193 (390)
232 KOG2610 Uncharacterized conser 97.7 0.00079 1.7E-08 63.3 13.3 143 207-350 112-274 (491)
233 PF10300 DUF3808: Protein of u 97.7 0.0049 1.1E-07 62.9 20.4 163 237-422 193-377 (468)
234 PF13281 DUF4071: Domain of un 97.7 0.009 2E-07 58.3 20.8 179 199-391 142-338 (374)
235 PF08424 NRDE-2: NRDE-2, neces 97.7 0.0044 9.6E-08 60.0 18.7 149 219-388 6-184 (321)
236 KOG1914 mRNA cleavage and poly 97.7 0.014 3.1E-07 58.3 21.6 206 217-423 264-503 (656)
237 KOG2053 Mitochondrial inherita 97.7 0.0016 3.5E-08 68.3 15.8 133 243-400 20-152 (932)
238 COG3118 Thioredoxin domain-con 97.6 0.0044 9.4E-08 57.7 16.8 162 233-419 135-299 (304)
239 KOG1550 Extracellular protein 97.6 0.015 3.2E-07 60.8 22.9 242 178-430 264-547 (552)
240 COG0790 FOG: TPR repeat, SEL1 97.6 0.03 6.5E-07 53.4 23.3 191 208-422 51-267 (292)
241 PF00515 TPR_1: Tetratricopept 97.6 0.00012 2.7E-09 45.2 4.5 32 233-264 2-33 (34)
242 PF07719 TPR_2: Tetratricopept 97.6 0.00019 4.1E-09 44.2 5.2 32 233-264 2-33 (34)
243 PF00515 TPR_1: Tetratricopept 97.5 0.00017 3.7E-09 44.6 4.5 32 358-390 2-33 (34)
244 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00055 1.2E-08 64.2 9.4 102 198-300 81-186 (390)
245 PF07719 TPR_2: Tetratricopept 97.5 0.00028 6E-09 43.5 5.2 33 358-391 2-34 (34)
246 KOG0530 Protein farnesyltransf 97.5 0.0042 9.1E-08 56.6 14.4 176 212-404 40-233 (318)
247 PF03704 BTAD: Bacterial trans 97.4 0.0049 1.1E-07 52.2 13.8 60 268-350 64-123 (146)
248 PF08631 SPO22: Meiosis protei 97.4 0.1 2.3E-06 49.4 24.1 209 210-419 5-273 (278)
249 KOG2471 TPR repeat-containing 97.4 0.0016 3.5E-08 64.0 11.2 145 236-404 210-381 (696)
250 KOG1258 mRNA processing protei 97.4 0.04 8.6E-07 56.0 21.2 122 199-321 298-420 (577)
251 PF08424 NRDE-2: NRDE-2, neces 97.4 0.023 5E-07 55.1 19.1 147 253-422 6-184 (321)
252 PF10300 DUF3808: Protein of u 97.3 0.018 3.9E-07 58.8 18.6 161 207-387 197-376 (468)
253 PF03704 BTAD: Bacterial trans 97.3 0.0083 1.8E-07 50.8 13.7 88 333-421 16-125 (146)
254 COG0790 FOG: TPR repeat, SEL1 97.2 0.086 1.9E-06 50.2 21.5 154 212-390 91-269 (292)
255 PF04910 Tcf25: Transcriptiona 97.2 0.014 3E-07 57.4 16.0 172 223-426 31-227 (360)
256 KOG1308 Hsp70-interacting prot 97.2 0.00025 5.5E-09 66.7 3.6 92 205-297 121-212 (377)
257 KOG1550 Extracellular protein 97.2 0.042 9E-07 57.4 20.3 183 211-420 225-425 (552)
258 PF02259 FAT: FAT domain; Int 97.2 0.094 2E-06 51.2 21.8 157 266-426 146-343 (352)
259 KOG2300 Uncharacterized conser 97.2 0.28 6.1E-06 48.8 23.9 32 235-266 91-123 (629)
260 PF02259 FAT: FAT domain; Int 97.2 0.031 6.6E-07 54.6 18.2 147 228-390 142-341 (352)
261 COG2976 Uncharacterized protei 97.1 0.048 1E-06 47.8 16.2 91 331-423 97-190 (207)
262 KOG1308 Hsp70-interacting prot 97.1 0.00047 1E-08 64.9 4.1 125 236-385 118-242 (377)
263 PF09613 HrpB1_HrpK: Bacterial 97.1 0.037 7.9E-07 47.2 14.5 82 199-280 11-92 (160)
264 KOG4507 Uncharacterized conser 97.0 0.0031 6.7E-08 63.4 8.6 107 270-399 610-717 (886)
265 COG2909 MalT ATP-dependent tra 97.0 0.16 3.5E-06 54.0 21.4 194 204-421 421-647 (894)
266 KOG1914 mRNA cleavage and poly 96.9 0.12 2.6E-06 52.0 19.1 170 251-421 264-464 (656)
267 PF07079 DUF1347: Protein of u 96.9 0.47 1E-05 46.9 24.6 49 367-417 472-520 (549)
268 PF13181 TPR_8: Tetratricopept 96.9 0.0018 3.8E-08 39.8 4.3 30 234-263 3-32 (34)
269 KOG2396 HAT (Half-A-TPR) repea 96.9 0.015 3.3E-07 57.7 12.6 94 215-308 88-181 (568)
270 KOG2300 Uncharacterized conser 96.9 0.23 5.1E-06 49.3 20.1 192 204-415 329-550 (629)
271 PF07079 DUF1347: Protein of u 96.9 0.14 3E-06 50.5 18.5 112 268-383 381-520 (549)
272 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.18 3.9E-06 49.6 18.9 201 219-424 289-534 (660)
273 KOG2396 HAT (Half-A-TPR) repea 96.8 0.028 6E-07 55.9 13.2 97 283-401 87-183 (568)
274 PF13181 TPR_8: Tetratricopept 96.8 0.0029 6.2E-08 38.9 4.3 30 359-389 3-32 (34)
275 KOG3783 Uncharacterized conser 96.7 0.46 9.9E-06 48.0 21.4 209 215-426 250-525 (546)
276 COG2976 Uncharacterized protei 96.7 0.12 2.6E-06 45.3 15.1 116 251-391 71-192 (207)
277 KOG0985 Vesicle coat protein c 96.7 0.2 4.2E-06 54.0 19.2 201 196-412 1102-1374(1666)
278 PF14561 TPR_20: Tetratricopep 96.6 0.022 4.8E-07 44.0 9.2 77 342-419 7-85 (90)
279 KOG3824 Huntingtin interacting 96.6 0.027 5.9E-07 52.6 11.1 66 242-308 126-191 (472)
280 PF04781 DUF627: Protein of un 96.5 0.05 1.1E-06 43.2 10.7 45 342-387 63-107 (111)
281 PRK10941 hypothetical protein; 96.5 0.037 8.1E-07 51.9 11.7 70 331-401 189-258 (269)
282 PF09613 HrpB1_HrpK: Bacterial 96.5 0.21 4.6E-06 42.6 15.1 92 282-398 25-116 (160)
283 KOG0985 Vesicle coat protein c 96.5 0.36 7.8E-06 52.1 19.4 87 204-296 1054-1162(1666)
284 PF13174 TPR_6: Tetratricopept 96.4 0.0065 1.4E-07 36.8 4.3 31 234-264 2-32 (33)
285 PF10345 Cohesin_load: Cohesin 96.4 1.6 3.6E-05 46.2 27.0 236 178-416 75-428 (608)
286 KOG1464 COP9 signalosome, subu 96.4 0.29 6.2E-06 45.2 16.1 175 212-387 41-260 (440)
287 KOG3616 Selective LIM binding 96.3 0.19 4.1E-06 52.3 15.8 207 201-420 664-910 (1636)
288 KOG2041 WD40 repeat protein [G 96.3 0.21 4.6E-06 51.6 16.1 186 224-418 685-936 (1189)
289 PF13176 TPR_7: Tetratricopept 96.3 0.009 1.9E-07 37.4 4.3 25 235-259 2-26 (36)
290 PF13174 TPR_6: Tetratricopept 96.3 0.01 2.2E-07 35.9 4.4 31 359-390 2-32 (33)
291 TIGR02561 HrpB1_HrpK type III 96.2 0.17 3.8E-06 42.4 12.8 75 207-281 19-93 (153)
292 KOG3824 Huntingtin interacting 96.2 0.013 2.8E-07 54.7 6.6 67 209-275 127-193 (472)
293 PF13176 TPR_7: Tetratricopept 96.1 0.012 2.5E-07 36.8 4.2 29 394-422 1-29 (36)
294 PF12968 DUF3856: Domain of Un 96.0 0.17 3.8E-06 40.6 11.3 88 333-421 19-129 (144)
295 COG3914 Spy Predicted O-linked 96.0 0.21 4.6E-06 50.8 14.7 143 212-370 45-189 (620)
296 COG3914 Spy Predicted O-linked 96.0 0.35 7.6E-06 49.3 16.1 139 245-407 44-191 (620)
297 PF04781 DUF627: Protein of un 96.0 0.068 1.5E-06 42.5 8.8 91 205-296 3-107 (111)
298 PRK10941 hypothetical protein; 95.9 0.067 1.4E-06 50.2 10.2 67 237-304 186-252 (269)
299 PF14561 TPR_20: Tetratricopep 95.9 0.13 2.9E-06 39.6 10.3 64 217-280 7-72 (90)
300 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.048 1E-06 37.4 6.6 41 233-273 2-42 (53)
301 PF14853 Fis1_TPR_C: Fis1 C-te 95.8 0.05 1.1E-06 37.3 6.6 43 358-401 2-44 (53)
302 COG5107 RNA14 Pre-mRNA 3'-end 95.8 0.29 6.3E-06 48.3 14.1 164 253-420 289-494 (660)
303 PF08631 SPO22: Meiosis protei 95.8 0.49 1.1E-05 44.9 15.7 124 283-421 9-150 (278)
304 KOG1310 WD40 repeat protein [G 95.7 0.045 9.7E-07 54.7 8.0 90 212-302 388-480 (758)
305 PF10345 Cohesin_load: Cohesin 95.6 3.7 8E-05 43.6 23.9 187 214-420 37-253 (608)
306 COG4941 Predicted RNA polymera 95.6 0.47 1E-05 45.1 14.3 188 214-429 212-402 (415)
307 COG1747 Uncharacterized N-term 95.6 1.6 3.4E-05 44.0 18.4 178 207-391 75-292 (711)
308 PF04910 Tcf25: Transcriptiona 95.6 0.46 1E-05 46.7 15.2 138 293-433 32-188 (360)
309 KOG2422 Uncharacterized conser 95.5 1.1 2.4E-05 45.7 17.2 92 331-423 350-450 (665)
310 smart00028 TPR Tetratricopepti 95.5 0.023 4.9E-07 33.2 3.7 29 235-263 4-32 (34)
311 KOG3807 Predicted membrane pro 95.5 1.6 3.5E-05 41.5 17.2 174 212-399 198-403 (556)
312 COG2909 MalT ATP-dependent tra 95.4 1.8 3.9E-05 46.4 19.2 192 203-417 463-684 (894)
313 KOG0890 Protein kinase of the 95.4 1.5 3.3E-05 51.7 19.8 212 207-422 1458-1732(2382)
314 smart00028 TPR Tetratricopepti 95.3 0.03 6.5E-07 32.6 3.8 31 359-390 3-33 (34)
315 COG4976 Predicted methyltransf 95.1 0.037 8E-07 49.7 5.1 60 207-266 4-63 (287)
316 PF09986 DUF2225: Uncharacteri 95.1 0.22 4.8E-06 45.1 10.3 70 331-401 126-209 (214)
317 COG5191 Uncharacterized conser 95.1 0.046 9.9E-07 51.2 5.8 88 221-308 96-183 (435)
318 KOG3807 Predicted membrane pro 95.0 3.4 7.3E-05 39.5 19.4 176 244-427 196-397 (556)
319 PF04053 Coatomer_WDAD: Coatom 95.0 0.94 2E-05 45.8 15.4 170 209-436 272-442 (443)
320 PRK15180 Vi polysaccharide bio 94.9 0.43 9.2E-06 47.5 12.0 126 210-358 301-426 (831)
321 KOG2422 Uncharacterized conser 94.7 4.1 8.9E-05 41.7 18.6 157 210-389 250-450 (665)
322 KOG4814 Uncharacterized conser 94.6 3.1 6.8E-05 43.1 17.5 90 331-421 362-457 (872)
323 KOG1310 WD40 repeat protein [G 94.6 0.13 2.9E-06 51.5 7.8 103 231-355 373-477 (758)
324 TIGR02561 HrpB1_HrpK type III 94.5 0.72 1.6E-05 38.8 10.9 77 331-408 18-94 (153)
325 KOG2041 WD40 repeat protein [G 94.5 1 2.2E-05 46.9 13.9 89 293-384 844-936 (1189)
326 COG4976 Predicted methyltransf 94.4 0.052 1.1E-06 48.7 4.2 59 333-392 5-63 (287)
327 KOG3616 Selective LIM binding 94.3 1.1 2.3E-05 47.1 13.7 74 331-415 773-847 (1636)
328 PRK15180 Vi polysaccharide bio 94.3 0.28 6E-06 48.7 9.2 149 281-430 303-466 (831)
329 KOG0529 Protein geranylgeranyl 94.3 2.8 6E-05 41.2 15.9 172 215-404 46-241 (421)
330 PF12968 DUF3856: Domain of Un 94.3 1.8 4E-05 34.9 12.1 56 331-387 63-129 (144)
331 PF10602 RPN7: 26S proteasome 94.2 0.64 1.4E-05 40.8 10.7 102 233-353 37-143 (177)
332 KOG1839 Uncharacterized protei 94.2 0.44 9.5E-06 52.9 11.5 148 216-387 956-1128(1236)
333 PF09986 DUF2225: Uncharacteri 94.1 1.3 2.8E-05 40.1 12.8 96 212-308 91-207 (214)
334 COG5191 Uncharacterized conser 94.1 0.12 2.6E-06 48.5 6.0 92 287-401 93-185 (435)
335 COG4649 Uncharacterized protei 94.0 3.8 8.3E-05 35.5 15.6 140 244-404 70-212 (221)
336 KOG0529 Protein geranylgeranyl 93.9 2.3 5.1E-05 41.7 14.6 139 243-403 39-194 (421)
337 PF13374 TPR_10: Tetratricopep 93.9 0.15 3.3E-06 32.4 4.7 29 233-261 3-31 (42)
338 KOG3364 Membrane protein invol 93.9 1.3 2.9E-05 36.6 10.9 64 337-401 49-114 (149)
339 COG3629 DnrI DNA-binding trans 93.8 2.2 4.8E-05 40.1 13.9 64 357-421 153-216 (280)
340 KOG3364 Membrane protein invol 93.7 0.77 1.7E-05 37.9 9.3 74 357-430 32-109 (149)
341 KOG1463 26S proteasome regulat 93.5 7.4 0.00016 37.4 17.4 152 271-424 133-319 (411)
342 KOG1464 COP9 signalosome, subu 93.5 6.4 0.00014 36.6 16.2 176 245-422 40-261 (440)
343 KOG1839 Uncharacterized protei 93.4 0.86 1.9E-05 50.7 11.9 163 235-421 935-1128(1236)
344 PF13374 TPR_10: Tetratricopep 93.4 0.2 4.4E-06 31.8 4.6 29 358-387 3-31 (42)
345 KOG4814 Uncharacterized conser 93.3 5.4 0.00012 41.4 16.4 95 233-328 355-455 (872)
346 COG2912 Uncharacterized conser 93.2 0.73 1.6E-05 42.8 9.6 69 331-400 189-257 (269)
347 COG4649 Uncharacterized protei 93.1 5.3 0.00012 34.7 14.6 139 207-369 67-212 (221)
348 PF10602 RPN7: 26S proteasome 93.0 1.7 3.7E-05 38.1 11.2 88 331-419 44-140 (177)
349 KOG0128 RNA-binding protein SA 92.9 5.2 0.00011 42.7 16.1 203 220-422 300-527 (881)
350 PF00244 14-3-3: 14-3-3 protei 92.8 5.7 0.00012 36.6 15.0 30 235-264 4-33 (236)
351 PRK13184 pknD serine/threonine 92.5 13 0.00027 41.3 19.2 98 206-305 483-590 (932)
352 COG5159 RPN6 26S proteasome re 92.3 9.2 0.0002 35.9 15.2 202 202-421 7-235 (421)
353 COG1747 Uncharacterized N-term 92.1 15 0.00033 37.3 20.9 171 228-404 62-251 (711)
354 KOG0890 Protein kinase of the 92.0 9.5 0.00021 45.5 18.0 151 199-367 1630-1799(2382)
355 PF10579 Rapsyn_N: Rapsyn N-te 91.9 1.9 4.1E-05 32.1 8.4 58 275-352 15-72 (80)
356 PF15015 NYD-SP12_N: Spermatog 91.9 3.3 7.2E-05 40.8 12.3 88 205-293 183-288 (569)
357 PF11207 DUF2989: Protein of u 91.1 7.6 0.00016 34.6 12.9 71 340-412 123-198 (203)
358 COG2912 Uncharacterized conser 91.0 1.1 2.3E-05 41.7 7.9 71 235-306 184-254 (269)
359 PF07720 TPR_3: Tetratricopept 90.9 0.93 2E-05 28.3 5.1 30 234-263 3-34 (36)
360 PF04190 DUF410: Protein of un 90.8 14 0.00031 34.5 18.7 153 210-387 2-170 (260)
361 PF12862 Apc5: Anaphase-promot 90.7 1 2.3E-05 34.8 6.6 55 209-263 9-72 (94)
362 PF04053 Coatomer_WDAD: Coatom 90.6 2 4.2E-05 43.6 10.0 132 240-411 269-408 (443)
363 PF12862 Apc5: Anaphase-promot 90.5 1.2 2.6E-05 34.5 6.7 57 333-390 8-73 (94)
364 smart00299 CLH Clathrin heavy 90.3 9.4 0.0002 31.6 13.5 32 246-277 21-52 (140)
365 PF04190 DUF410: Protein of un 90.3 16 0.00034 34.2 18.0 197 203-407 15-243 (260)
366 KOG2581 26S proteasome regulat 90.0 17 0.00036 35.9 15.0 25 331-355 255-279 (493)
367 PF10579 Rapsyn_N: Rapsyn N-te 89.9 2.3 5E-05 31.6 7.2 59 202-260 10-71 (80)
368 KOG4014 Uncharacterized conser 89.8 12 0.00027 32.7 12.7 106 198-308 34-151 (248)
369 PF07721 TPR_4: Tetratricopept 89.7 0.45 9.8E-06 27.1 2.8 23 234-256 3-25 (26)
370 PF11207 DUF2989: Protein of u 89.6 14 0.00029 33.0 13.2 77 277-378 117-198 (203)
371 COG3629 DnrI DNA-binding trans 89.1 2.5 5.4E-05 39.8 8.8 56 331-387 161-216 (280)
372 PRK12798 chemotaxis protein; R 89.1 25 0.00055 34.9 21.6 109 222-330 101-214 (421)
373 PRK13184 pknD serine/threonine 88.8 12 0.00026 41.5 15.0 91 283-392 491-586 (932)
374 PF10373 EST1_DNA_bind: Est1 D 88.7 1.6 3.4E-05 41.0 7.4 62 217-278 1-62 (278)
375 PF07720 TPR_3: Tetratricopept 88.5 1.8 3.9E-05 27.0 5.1 32 358-390 2-35 (36)
376 KOG1538 Uncharacterized conser 88.3 21 0.00046 37.4 15.0 58 199-257 586-657 (1081)
377 PF07721 TPR_4: Tetratricopept 88.1 0.64 1.4E-05 26.5 2.7 22 394-415 3-24 (26)
378 PF15015 NYD-SP12_N: Spermatog 88.1 7.4 0.00016 38.5 11.3 91 232-323 183-284 (569)
379 COG4455 ImpE Protein of avirul 88.0 5 0.00011 36.2 9.3 60 207-266 10-69 (273)
380 PF10373 EST1_DNA_bind: Est1 D 87.9 1.8 3.8E-05 40.6 7.3 62 342-404 1-62 (278)
381 PF10516 SHNi-TPR: SHNi-TPR; 87.9 1 2.2E-05 28.5 3.6 27 234-260 3-29 (38)
382 COG3947 Response regulator con 87.9 8.6 0.00019 36.2 11.1 53 363-416 285-337 (361)
383 KOG0276 Vesicle coat complex C 87.7 5.2 0.00011 41.3 10.3 95 331-435 645-760 (794)
384 KOG2581 26S proteasome regulat 87.6 31 0.00066 34.1 15.1 33 357-390 247-279 (493)
385 KOG4279 Serine/threonine prote 86.8 1.8 3.8E-05 45.6 6.7 185 231-430 200-405 (1226)
386 PF11817 Foie-gras_1: Foie gra 86.3 17 0.00036 33.7 12.6 80 339-419 154-245 (247)
387 KOG2114 Vacuolar assembly/sort 85.5 9.7 0.00021 40.8 11.3 29 233-261 369-397 (933)
388 KOG1538 Uncharacterized conser 85.3 13 0.00027 38.9 11.7 87 294-384 740-830 (1081)
389 smart00386 HAT HAT (Half-A-TPR 85.2 2.7 5.9E-05 24.5 4.7 25 248-272 3-27 (33)
390 PF09670 Cas_Cas02710: CRISPR- 84.7 25 0.00055 34.9 13.7 62 234-296 133-198 (379)
391 PF10516 SHNi-TPR: SHNi-TPR; 84.3 2 4.4E-05 27.1 3.7 28 359-387 3-30 (38)
392 KOG0276 Vesicle coat complex C 84.0 14 0.00031 38.2 11.4 93 241-348 646-746 (794)
393 smart00386 HAT HAT (Half-A-TPR 84.0 3.4 7.4E-05 24.1 4.7 31 212-242 1-31 (33)
394 KOG4014 Uncharacterized conser 83.7 30 0.00065 30.4 14.9 168 230-421 32-233 (248)
395 PF09670 Cas_Cas02710: CRISPR- 83.4 24 0.00053 35.0 13.0 62 200-261 133-198 (379)
396 COG3947 Response regulator con 83.0 4.7 0.0001 37.9 7.1 66 319-385 273-340 (361)
397 PF10255 Paf67: RNA polymerase 83.0 11 0.00023 37.6 10.1 61 200-260 124-192 (404)
398 smart00101 14_3_3 14-3-3 homol 82.4 42 0.0009 31.1 17.0 56 202-257 5-64 (244)
399 KOG0889 Histone acetyltransfer 82.3 57 0.0012 41.0 16.9 102 266-388 2812-2916(3550)
400 COG4455 ImpE Protein of avirul 81.7 32 0.0007 31.2 11.5 58 277-357 12-69 (273)
401 KOG1920 IkappaB kinase complex 80.8 42 0.00091 37.7 14.2 46 302-347 940-989 (1265)
402 KOG1463 26S proteasome regulat 79.3 56 0.0012 31.6 12.8 166 204-390 134-319 (411)
403 PF12739 TRAPPC-Trs85: ER-Golg 78.6 77 0.0017 31.8 16.4 97 199-296 209-329 (414)
404 KOG0546 HSP90 co-chaperone CPR 78.3 2.4 5.3E-05 40.8 3.7 106 203-309 227-351 (372)
405 PRK11619 lytic murein transgly 77.8 1E+02 0.0023 33.0 20.0 205 204-418 247-465 (644)
406 KOG0128 RNA-binding protein SA 77.2 1.1E+02 0.0025 33.1 23.5 36 386-421 306-341 (881)
407 KOG3783 Uncharacterized conser 76.7 96 0.0021 31.9 17.5 190 201-390 270-523 (546)
408 COG5536 BET4 Protein prenyltra 76.2 36 0.00078 32.0 10.4 171 215-401 49-236 (328)
409 KOG4279 Serine/threonine prote 76.2 26 0.00056 37.4 10.4 134 210-355 255-398 (1226)
410 PF12739 TRAPPC-Trs85: ER-Golg 75.9 92 0.002 31.3 15.4 30 233-262 209-238 (414)
411 TIGR03504 FimV_Cterm FimV C-te 75.8 7 0.00015 25.6 4.3 24 361-385 3-26 (44)
412 TIGR03504 FimV_Cterm FimV C-te 75.6 6.4 0.00014 25.8 4.0 25 236-260 3-27 (44)
413 PF11846 DUF3366: Domain of un 75.5 12 0.00025 33.2 7.2 52 212-264 125-176 (193)
414 PF13226 DUF4034: Domain of un 74.6 45 0.00097 31.5 11.0 113 207-319 9-151 (277)
415 KOG0546 HSP90 co-chaperone CPR 73.5 4.2 9.2E-05 39.2 3.9 79 199-277 276-354 (372)
416 PF14863 Alkyl_sulf_dimr: Alky 72.5 19 0.00041 30.2 7.2 50 231-280 69-118 (141)
417 PF12854 PPR_1: PPR repeat 72.4 8.7 0.00019 23.3 3.9 26 357-383 7-32 (34)
418 PF11846 DUF3366: Domain of un 70.5 17 0.00037 32.1 7.1 47 341-389 129-175 (193)
419 PF09205 DUF1955: Domain of un 70.3 26 0.00057 29.1 7.2 55 206-260 94-148 (161)
420 PRK11619 lytic murein transgly 70.1 1.6E+02 0.0035 31.6 22.9 88 339-429 295-382 (644)
421 PF13041 PPR_2: PPR repeat fam 69.9 25 0.00054 23.1 6.2 30 357-387 3-32 (50)
422 TIGR02710 CRISPR-associated pr 69.7 76 0.0016 31.4 11.7 53 205-257 137-196 (380)
423 COG5536 BET4 Protein prenyltra 69.2 1E+02 0.0022 29.1 11.6 168 236-424 35-225 (328)
424 PF00244 14-3-3: 14-3-3 protei 69.1 95 0.0021 28.5 16.0 48 374-421 142-198 (236)
425 KOG2758 Translation initiation 68.9 1.1E+02 0.0025 29.4 15.9 78 217-296 114-196 (432)
426 cd02680 MIT_calpain7_2 MIT: do 68.8 9.6 0.00021 28.1 4.1 17 245-261 19-35 (75)
427 PF12854 PPR_1: PPR repeat 68.8 14 0.0003 22.4 4.3 27 231-257 6-32 (34)
428 PF14863 Alkyl_sulf_dimr: Alky 68.8 37 0.0008 28.5 8.2 48 358-406 71-118 (141)
429 PF11817 Foie-gras_1: Foie gra 68.3 43 0.00092 31.0 9.4 75 214-289 154-240 (247)
430 COG4941 Predicted RNA polymera 68.2 1.2E+02 0.0026 29.4 12.6 34 359-393 367-400 (415)
431 smart00299 CLH Clathrin heavy 67.5 23 0.00049 29.3 6.9 84 331-417 15-107 (140)
432 cd02680 MIT_calpain7_2 MIT: do 67.3 12 0.00027 27.6 4.4 18 335-352 18-35 (75)
433 PHA02537 M terminase endonucle 67.3 71 0.0015 29.2 10.3 97 331-429 91-215 (230)
434 PRK12798 chemotaxis protein; R 67.2 1.4E+02 0.0031 29.8 21.3 198 199-417 113-320 (421)
435 KOG2114 Vacuolar assembly/sort 67.2 78 0.0017 34.4 11.7 29 199-227 369-397 (933)
436 KOG1920 IkappaB kinase complex 66.3 64 0.0014 36.4 11.2 45 305-349 1003-1052(1265)
437 PF13041 PPR_2: PPR repeat fam 65.0 35 0.00076 22.4 6.2 29 233-261 4-32 (50)
438 cd02681 MIT_calpain7_1 MIT: do 63.1 17 0.00036 27.0 4.5 19 334-352 17-35 (76)
439 cd02682 MIT_AAA_Arch MIT: doma 62.4 39 0.00084 25.0 6.2 31 335-365 18-55 (75)
440 KOG2063 Vacuolar assembly/sort 62.2 2.1E+02 0.0046 31.7 14.2 167 200-386 506-712 (877)
441 PF04348 LppC: LppC putative l 62.1 2.6 5.5E-05 43.9 0.0 113 182-295 8-126 (536)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 60.8 92 0.002 25.5 11.9 108 214-350 1-126 (126)
443 cd02682 MIT_AAA_Arch MIT: doma 60.1 57 0.0012 24.1 6.8 30 238-267 12-48 (75)
444 KOG2063 Vacuolar assembly/sort 59.8 1.3E+02 0.0028 33.4 12.1 89 331-420 599-712 (877)
445 PRK15490 Vi polysaccharide bio 59.8 64 0.0014 33.8 9.5 49 331-382 50-98 (578)
446 PF02184 HAT: HAT (Half-A-TPR) 59.4 22 0.00048 21.5 3.7 27 374-401 3-29 (32)
447 PF10255 Paf67: RNA polymerase 58.9 18 0.00039 36.1 5.2 53 331-385 130-191 (404)
448 PF01535 PPR: PPR repeat; Int 58.1 16 0.00035 20.8 3.1 24 360-384 3-26 (31)
449 PF04090 RNA_pol_I_TF: RNA pol 57.4 1.4E+02 0.0031 26.6 11.9 33 339-371 158-192 (199)
450 PF04212 MIT: MIT (microtubule 56.5 36 0.00077 24.4 5.3 19 333-351 15-33 (69)
451 KOG4521 Nuclear pore complex, 56.2 3.2E+02 0.0069 31.2 14.1 135 266-409 920-1071(1480)
452 PF09797 NatB_MDM20: N-acetylt 56.2 63 0.0014 31.8 8.7 43 283-325 199-241 (365)
453 PHA02537 M terminase endonucle 55.4 15 0.00033 33.5 3.8 92 209-300 94-211 (230)
454 PF09797 NatB_MDM20: N-acetylt 55.3 63 0.0014 31.8 8.5 47 212-258 197-243 (365)
455 cd02679 MIT_spastin MIT: domai 54.9 30 0.00066 25.8 4.7 18 335-352 20-37 (79)
456 KOG1114 Tripeptidyl peptidase 54.6 3.5E+02 0.0076 30.2 14.4 80 339-420 1212-1294(1304)
457 PF07163 Pex26: Pex26 protein; 54.4 1.9E+02 0.004 27.4 10.6 106 207-313 44-165 (309)
458 COG5159 RPN6 26S proteasome re 54.2 2E+02 0.0044 27.3 14.8 169 236-422 7-195 (421)
459 PF07163 Pex26: Pex26 protein; 53.4 2E+02 0.0044 27.2 12.5 83 331-415 91-181 (309)
460 KOG0686 COP9 signalosome, subu 53.1 98 0.0021 30.8 8.9 88 331-419 158-256 (466)
461 PF12583 TPPII_N: Tripeptidyl 52.6 48 0.001 27.3 5.8 27 282-308 91-117 (139)
462 PF13226 DUF4034: Domain of un 52.0 2.1E+02 0.0046 27.0 13.6 133 239-372 7-148 (277)
463 TIGR00756 PPR pentatricopeptid 51.9 33 0.00071 19.8 3.9 25 360-385 3-27 (35)
464 PRK15490 Vi polysaccharide bio 51.3 1.4E+02 0.0031 31.3 10.4 46 233-280 43-88 (578)
465 TIGR02710 CRISPR-associated pr 51.2 2.6E+02 0.0056 27.8 13.3 19 403-421 257-275 (380)
466 KOG4151 Myosin assembly protei 50.8 43 0.00092 35.9 6.6 114 181-304 45-164 (748)
467 KOG1497 COP9 signalosome, subu 50.5 2.4E+02 0.0053 27.2 12.6 86 233-320 104-203 (399)
468 cd02681 MIT_calpain7_1 MIT: do 48.8 18 0.00039 26.8 2.7 16 212-227 20-35 (76)
469 KOG0687 26S proteasome regulat 47.5 1.6E+02 0.0035 28.5 9.2 95 199-296 105-210 (393)
470 cd02684 MIT_2 MIT: domain cont 46.7 44 0.00096 24.6 4.5 17 335-351 18-34 (75)
471 PF10952 DUF2753: Protein of u 46.4 1E+02 0.0022 25.2 6.7 58 360-418 4-76 (140)
472 KOG1938 Protein with predicted 46.1 1E+02 0.0022 34.0 8.6 139 215-388 241-385 (960)
473 KOG3677 RNA polymerase I-assoc 46.1 91 0.002 31.1 7.5 100 206-309 243-351 (525)
474 cd02678 MIT_VPS4 MIT: domain c 46.0 49 0.0011 24.2 4.6 33 283-352 3-35 (75)
475 PF13812 PPR_3: Pentatricopept 45.6 59 0.0013 18.8 4.3 27 359-386 3-29 (34)
476 KOG0687 26S proteasome regulat 45.6 2.9E+02 0.0064 26.8 11.7 30 232-261 104-133 (393)
477 PRK09687 putative lyase; Provi 45.4 2.7E+02 0.0058 26.3 18.7 154 215-405 127-280 (280)
478 PF04212 MIT: MIT (microtubule 45.2 56 0.0012 23.3 4.8 21 239-259 12-32 (69)
479 PF08626 TRAPPC9-Trs120: Trans 44.0 4.4E+02 0.0096 30.7 14.0 84 337-421 359-474 (1185)
480 cd00280 TRFH Telomeric Repeat 43.8 2.3E+02 0.005 25.0 9.2 39 331-370 119-157 (200)
481 PF04348 LppC: LppC putative l 43.8 7.7 0.00017 40.4 0.0 76 216-292 7-86 (536)
482 PF12549 TOH_N: Tyrosine hydro 43.7 14 0.0003 20.9 1.0 11 56-66 10-20 (25)
483 PF15290 Syntaphilin: Golgi-lo 43.5 21 0.00045 33.2 2.7 11 39-49 24-34 (305)
484 cd02684 MIT_2 MIT: domain cont 42.5 49 0.0011 24.3 4.2 17 244-260 18-34 (75)
485 COG3014 Uncharacterized protei 42.5 3.4E+02 0.0073 26.6 15.6 34 391-424 212-245 (449)
486 TIGR03362 VI_chp_7 type VI sec 41.8 3.2E+02 0.007 26.1 15.0 47 210-257 111-157 (301)
487 KOG1811 Predicted Zn2+-binding 41.6 4.5E+02 0.0098 27.8 12.0 87 333-424 566-656 (1141)
488 KOG4151 Myosin assembly protei 40.6 98 0.0021 33.3 7.4 117 215-361 44-165 (748)
489 cd02679 MIT_spastin MIT: domai 40.1 45 0.00097 24.9 3.6 15 212-226 22-36 (79)
490 PF14929 TAF1_subA: TAF RNA Po 40.1 4.6E+02 0.01 27.5 17.4 166 214-407 274-470 (547)
491 PF12753 Nro1: Nuclear pore co 40.0 39 0.00085 33.4 4.1 47 248-296 334-391 (404)
492 cd02677 MIT_SNX15 MIT: domain 39.9 47 0.001 24.5 3.7 15 246-260 20-34 (75)
493 COG5187 RPN7 26S proteasome re 39.7 2.1E+02 0.0044 27.3 8.5 96 199-294 116-219 (412)
494 cd02677 MIT_SNX15 MIT: domain 39.3 49 0.0011 24.4 3.7 14 340-353 4-17 (75)
495 PF10952 DUF2753: Protein of u 39.3 1.5E+02 0.0033 24.3 6.6 58 201-258 4-76 (140)
496 PF07219 HemY_N: HemY protein 39.1 1.1E+02 0.0024 24.2 6.0 31 235-265 62-92 (108)
497 smart00671 SEL1 Sel1-like repe 38.8 62 0.0013 19.1 3.7 12 283-294 21-32 (36)
498 PF04097 Nic96: Nup93/Nic96; 38.6 4.2E+02 0.009 28.3 12.0 196 207-417 267-530 (613)
499 PF08238 Sel1: Sel1 repeat; I 38.5 79 0.0017 19.0 4.2 13 283-295 24-36 (39)
500 KOG0686 COP9 signalosome, subu 38.2 4.3E+02 0.0093 26.5 12.5 95 267-385 151-256 (466)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-32 Score=267.37 Aligned_cols=247 Identities=16% Similarity=0.160 Sum_probs=240.6
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.+..+|..++.+++ .+.++|+++|+++-..+.+++|+.+|.+++.+.|.++.++-++|.+|+.+|..+-|+..|+++++
T Consensus 236 ~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 236 LAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred HHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 67788999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
+.|..+.++.++|..+-..|. ..+|+.+|.+++.+.|+++++.++||.++.++|.++.|..+|..++..
T Consensus 315 ~~P~F~~Ay~NlanALkd~G~-V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN 393 (966)
T KOG4626|consen 315 LQPNFPDAYNNLANALKDKGS-VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN 393 (966)
T ss_pred cCCCchHHHhHHHHHHHhccc-hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence 999999999999999998875 999999999999999999999999999999999999999999988876
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
.+|.++|++++|+.+|+.+|++.|..++++.++|..|..+|+ .+.|+.+|.+|++++|...+++.+||.+|...|+.
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence 889999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHh
Q 013800 409 EDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 409 ~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.+|+..|+.++.+.|+|+++..
T Consensus 473 ~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 473 PEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHHHHHHHccCCCCchhhh
Confidence 9999999999999999999865
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-30 Score=254.19 Aligned_cols=255 Identities=15% Similarity=0.119 Sum_probs=242.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
.-.+|...|.+++...+ .++.+|.++|-++...|+...|+..|++++.++|...++|++||.+|...+.+++|+..|.+
T Consensus 199 rl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred ccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 34577888999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
|+.+.|..+.++-++|.+|+++|. .+-|+.+|+++++++|+.++++.++|.++.+.|+..+|.+.|.+++..
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~-ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada 356 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGL-LDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA 356 (966)
T ss_pred HHhcCCcchhhccceEEEEecccc-HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence 999999999999999999999975 999999999999999999999999999999999999999999988876
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++.++|.+++|...|+++++..|+.+.++.+||.+|.++|+ +++|+.+|+.++.+.|...+++.++|.+|..+
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn-l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN-LDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc-HHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 889999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
|+.+.|+.+|.+++.++|.|.++.. +|.+|
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 9999999999999999999988766 44443
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.4e-23 Score=221.12 Aligned_cols=247 Identities=13% Similarity=0.044 Sum_probs=221.2
Q ss_pred CCChHHHHHhhcCCCC--CCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 179 PVSPPMYLAMGLGISV--PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
+.++..++..++.... .....+|..+|.++...|++++|+..|+++++.+|++...|+.+|.++...|++++|+..|+
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456667777776542 15667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
++++.+|+++.+++.+|.+++..++ +++|+.+|+++++++|++..++.++|.++...|++++|+..+.+++..
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGE-FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999875 999999999999999999999999999999999999999999988875
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 331 ------LPIQSKGDLEGAEEYFSRAILANPGDGEI------MSQYAKLVWE-LHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~-~g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
.++...|++++|+..|++++++.|.+... +.+.+.+++. .|+ +++|+.+|+++++++|++..++..
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~-~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD-FIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCcHHHHHH
Confidence 78889999999999999999999875332 3334444544 577 999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 398 YACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
+|.++..+|++++|+.+|++++++.+...+
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999999875433
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=4.2e-23 Score=217.52 Aligned_cols=245 Identities=11% Similarity=0.032 Sum_probs=216.1
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.++..|..+|.+++.+.+ . ...|.++|.++..+|++++|+..++++++++|++..+|+.+|.+|..+|++++|+..|.
T Consensus 141 ~~~~~Ai~~y~~al~~~p-~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~ 218 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKP-D-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218 (615)
T ss_pred CCHHHHHHHHHHHHhcCC-c-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467789999999999988 3 67899999999999999999999999999999999999999999999999988876543
Q ss_pred HHH-----------------------------------------------------------------------------
Q 013800 257 HAT----------------------------------------------------------------------------- 259 (436)
Q Consensus 257 ~al----------------------------------------------------------------------------- 259 (436)
.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (615)
T TIGR00990 219 ASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLG 298 (615)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHH
Confidence 322
Q ss_pred -----------------------Hh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 260 -----------------------MA---DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 260 -----------------------~~---~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
.. .|....++..+|.+++..++ +++|+.+|++++.++|++...++.+|.++..
T Consensus 299 ~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~-~~eA~~~~~kal~l~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 299 LKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK-HLEALADLSKSIELDPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 11 24455567778888777764 9999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 314 MEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
.|++++|...+++++.. .++...|++++|+.+|+++++++|++..++..+|.++..+|+ +++|+..|
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~-~~eA~~~~ 456 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS-IASSMATF 456 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 99999999999888776 778889999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 382 ERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 382 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
++++...|.++.++..+|.++..+|++++|++.|++++.+.|..
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998764
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.2e-22 Score=214.28 Aligned_cols=246 Identities=12% Similarity=0.066 Sum_probs=163.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+...+...+...+ ....++..+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 57 ~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred CcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55566666666666666 56667777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++++|+++.++..++.++...++ +++|+..+++++...|++..++..++ .+...|++++|...+.+.+..
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDK-ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 777777777777777777666654 77777777777777777776665543 356666666666666554332
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 ------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK----ALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~----A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++ |+..|+++++++|++..++..+|.
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~-~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~ 292 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR-SREAKLQAAEHWRHALQFNSDNVRIVTLYAD 292 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 334455666666666666666666666666666666666665 553 556666666666666666666666
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 401 FLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
++...|++++|+..+++++++.|+...
T Consensus 293 ~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 293 ALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 666666666666666666666555544
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=6.3e-22 Score=208.84 Aligned_cols=244 Identities=13% Similarity=0.064 Sum_probs=147.8
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+...+.+.+.++| +++.+|..+|.++...|++++|+..|+++++++|++..++..++.++...|++++|+..+++
T Consensus 91 ~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 55577788888888888 78888999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
++...|+++.++..++. +...+ ++++|+..++++++.+|. +......++.++...|++++|+..+.+++..
T Consensus 170 ~~~~~P~~~~a~~~~~~-l~~~g-~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 170 QAQEVPPRGDMIATCLS-FLNKS-RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHhCCCCHHHHHHHHH-HHHcC-CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 88888887776655432 33332 355555555554444432 2222233344444444444444444444332
Q ss_pred ------hHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 ------LPIQSKGDLEG----AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ------~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.++...|++++ |+..|+++++++|+++.++..+|.++...|+ +++|+..++++++++|+++.++..++.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ-NEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33344444442 4444444444444444444444444444444 444444444444444444444444444
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 401 FLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
++...|++++|+..|++++...|..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4444444444444444444444443
No 7
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.3e-23 Score=202.15 Aligned_cols=208 Identities=15% Similarity=0.121 Sum_probs=197.8
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+.+|..+|+++--+++++.|+++|+++++++|..+.+|..+|.=+....++|.|..+|++|+..+|.+-.+|+.+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
|.++++ ++.|+-.|++|++++|.+......+| ..+.+.|+.++|+.+|++|+.++|.
T Consensus 499 y~Kqek-~e~Ae~~fqkA~~INP~nsvi~~~~g----------------------~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 499 YLKQEK-LEFAEFHFQKAVEINPSNSVILCHIG----------------------RIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred eeccch-hhHHHHHHHhhhcCCccchhHHhhhh----------------------HHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 999986 99999999999999999999998888 8899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
++-..+..|.+++.+++ +++|+..+++..++.|++..+++.+|.+|.++|+.+.|+..|--|+.++|.-..
T Consensus 556 n~l~~~~~~~il~~~~~-~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGR-YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CchhHHHHHHHHHhhcc-hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999 999999999999999999999999999999999999999999999999987655
No 8
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.3e-22 Score=188.26 Aligned_cols=222 Identities=17% Similarity=0.201 Sum_probs=207.5
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
+...|..++-.|++-.|...|+.+|.++|.+...|..+|.+|....+.++-...|.+|..++|+++.+|+++|.+++-++
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH
Confidence 33444588888999999999999999999999989999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~ 348 (436)
+ |++|+..|++++.++|++...+.+++.++++++.+++++..+++++++ .++..+++|++|++.|..
T Consensus 409 q-~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 409 Q-YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred H-HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999999999999988 888899999999999999
Q ss_pred HHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 349 AILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 349 al~~~p~------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
++++.|. ++..+.+.|.+..+..+|+.+|+.++++|++++|....++..||.+..++|+.++|+++|+++..+.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999 7778888888888777779999999999999999999999999999999999999999999998875
Q ss_pred C
Q 013800 423 P 423 (436)
Q Consensus 423 p 423 (436)
.
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 3
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=5.2e-21 Score=214.40 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=173.6
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL--------------LLRNYAQLL 242 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------~~~~la~~~ 242 (436)
.+++++..++..++...+ .++.++..+|.++...|++++|+.+|+++++.+|++.. ....+|.++
T Consensus 283 g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 356688899999999999 78999999999999999999999999999999997642 224558888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
...|++++|+..|+++++++|.++.++..+|.++...++ +++|+++|+++++++|++..++..++.++.. ++.++|..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQQALRMDPGNTNAVRGLANLYRQ-QSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCHHHHHH
Confidence 999999999999999999999999999999999998875 9999999999999999999999888887643 45666666
Q ss_pred HHHHHHH---------------------HhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 323 AQEEHIQ---------------------VLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 323 ~~~~~~~---------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
.++.... ..++...|++++|+..|+++++++|+++.+++.+|.++...|+ +++|+..|
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-RSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 5542110 0445667777777777777777777777777777777777777 77777777
Q ss_pred HHHHHhCCCCHH
Q 013800 382 ERAVQASPADSH 393 (436)
Q Consensus 382 ~~al~~~p~~~~ 393 (436)
+++++..|+++.
T Consensus 519 ~~al~~~P~~~~ 530 (1157)
T PRK11447 519 RRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHcCCCCHH
Confidence 777777666554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=5.2e-21 Score=214.38 Aligned_cols=245 Identities=15% Similarity=0.126 Sum_probs=216.4
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQL---------------- 241 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~---------------- 241 (436)
++.++..++.+++.+++ .+..++..+|.++...|++++|+++|+++++.+|++..++..++.+
T Consensus 366 ~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 366 NLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 45577888999999998 7888999999999999999999999999999999988776555444
Q ss_pred --------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 242 --------------------------LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 242 --------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
+...|++++|++.|+++++++|+++.+++.+|.++...++ +++|+..|+++++
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-~~~A~~~l~~al~ 523 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-RSQADALMRRLAQ 523 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 4467999999999999999999999999999999999875 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH----------------------------------------HH-----
Q 013800 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI----------------------------------------QV----- 330 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----------------------------------------~~----- 330 (436)
..|+++.+++.++.++...++.++|+..+++.. ..
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~ 603 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence 999999999988888888888777776654210 00
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 331 -------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW 403 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 403 (436)
.++.+.|++++|+..|+++++.+|+++.++..++.++...|+ +++|++.|+++++..|++..++..+|.++.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 667888999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCC
Q 013800 404 ETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 404 ~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.+|++++|+++|++++...|..
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccC
Confidence 9999999999999999886554
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=3.1e-20 Score=202.78 Aligned_cols=242 Identities=13% Similarity=0.113 Sum_probs=151.2
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
++..++..++...+ .....+..++.++...|++++|+.++++++...|.+..+|..+|.++...|++++|+..|+++++
T Consensus 551 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 551 EAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444 34455666666666667777777777777766676677777777777777777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
.+|.++.++..+|.++...++ +++|+.+|+++++.+|++..++..++.++...|++++|...+......
T Consensus 630 ~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 708 (899)
T TIGR02917 630 LQPDSALALLLLADAYAVMKN-YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL 708 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHH
Confidence 777777777777777666653 777777777777777776666666666666666666666666544432
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
.++...|++++|+..|++++...|++ ..+..++.++...|+ +++|+..++++++..|++..++..+|.++..+|++
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGN-TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 44555566666666666666555554 445555555555555 55555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhhCCCCh
Q 013800 409 EDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 409 ~~A~~~~~~al~l~p~~~ 426 (436)
++|+..|+++++..|+..
T Consensus 787 ~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 555555555555555443
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=3.6e-20 Score=202.31 Aligned_cols=243 Identities=15% Similarity=0.136 Sum_probs=163.9
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++.......+ .....|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++
T Consensus 582 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 582 QLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455566666666666 56778888899999999999999999999998898888888999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++.+|++..++..++.++...++ +++|+..++++....|.+...+..+|.++...|++++|...+.+.+..
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 739 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKR-TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA 739 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH
Confidence 998888888777777777776654 777777777777777777777777777777777777777777655543
Q ss_pred ----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 331 ----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
.++...|++++|+..++++++.+|++..+++.+|.++...|+ +++|+..|+++++..|+++.++..++.++...|
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD-YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 444455555555555555555555555555555555555555 555555555555555555444444444444444
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 013800 407 EDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~p~ 424 (436)
+ .+|+.++++++.+.|+
T Consensus 819 ~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPN 835 (899)
T ss_pred c-HHHHHHHHHHHhhCCC
Confidence 4 3344444444444433
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=6.1e-20 Score=198.71 Aligned_cols=241 Identities=10% Similarity=0.007 Sum_probs=211.6
Q ss_pred hHHHHHhhcCCCCCC--ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 182 PPMYLAMGLGISVPG--FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 182 a~~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+...+.+++...+ . .+.+|.++|.++.. +++.+|+..|.+++...|++. ....+|.++...|++++|+..|++++
T Consensus 460 ~~~~~~~al~~~p-~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMS-PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCC-CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4455666666666 5 78899999999987 788899999999999999754 46677888889999999999999987
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013800 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------- 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------- 330 (436)
...|.+ ..+..+|.++...+ ++++|+.+|+++++.+|.+...+..++..+...|++++|...++++++.
T Consensus 537 ~~~p~~-~a~~~la~all~~G-d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~ 614 (987)
T PRK09782 537 LHDMSN-EDLLAAANTAQAAG-NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA 614 (987)
T ss_pred ccCCCc-HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 775554 45778888888876 5999999999999999998888887777777889999999999988864
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
.++.+.|++++|+..|++++.++|+++.++.++|.++...|+ +++|+..|+++++++|+++.++.++|.++..+|++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 788899999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhH
Q 013800 409 EDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 409 ~~A~~~~~~al~l~p~~~~a 428 (436)
++|+..|++++++.|+....
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHHHHHHHHHHhcCCCCchh
Confidence 99999999999999987543
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=7.5e-20 Score=182.27 Aligned_cols=248 Identities=16% Similarity=0.105 Sum_probs=213.9
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAED 253 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~ 253 (436)
+++.+..++..++..++ .+..++..+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.
T Consensus 50 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred ChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 55578888999999888 678889999999999999999999999988854322 2568899999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-----NILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
+|+++++..|.+..++..++.++...++ +++|+..++++++..|.+. ..+..++.++...|++++|...+++++
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQQEKD-WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHhch-HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999888875 9999999999999888753 245678888999999999999999877
Q ss_pred HH------------hHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 329 QV------------LPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 329 ~~------------~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
+. .++...|++++|+..|++++..+|.+ ..++..++.++...|+ +++|+..++++++..|+... +
T Consensus 208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~l~~~~~~~p~~~~-~ 285 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-EAEGLEFLRRALEEYPGADL-L 285 (389)
T ss_pred hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchH-H
Confidence 65 67888999999999999999988876 4677889999999999 99999999999999998654 4
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 429 (436)
..++.++...|++++|+..++++++..|+.....
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 8899999999999999999999999988865443
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=6.4e-20 Score=182.75 Aligned_cols=233 Identities=14% Similarity=0.070 Sum_probs=207.2
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAKL 275 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 275 (436)
..+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 445567777888999999999999999999999999999999999999999999999998864333 3578899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------hHHHHcCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------------LPIQSKGD 338 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~g~ 338 (436)
+...++ +++|+..|+++++.+|.+..++..++.++...|++++|...+...++. .++...|+
T Consensus 117 ~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGL-LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCC-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 988875 999999999999999999999999999999999999999999876653 34567899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
+++|+..|+++++.+|++..++..+|.++...|+ +++|+..|+++++.+|.+ ..++..++.++...|++++|+..+++
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGD-YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999886 36678899999999999999999999
Q ss_pred HHhhCCCChhHHhhhhh
Q 013800 418 FQQVAPIRQGAVTTANV 434 (436)
Q Consensus 418 al~l~p~~~~a~~~an~ 434 (436)
+++..|+.......+.+
T Consensus 275 ~~~~~p~~~~~~~la~~ 291 (389)
T PRK11788 275 ALEEYPGADLLLALAQL 291 (389)
T ss_pred HHHhCCCchHHHHHHHH
Confidence 99999987554334443
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=1.1e-19 Score=166.10 Aligned_cols=202 Identities=22% Similarity=0.279 Sum_probs=188.2
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 278 ELHRDQHRALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
..++ +++|+..|++++... +.....+..+| .++...|++++|+..|.+++..+|+
T Consensus 111 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 111 QQGK-YEQAMQQFEQAIEDPLYPQPARSLENAG----------------------LCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred Hccc-HHHHHHHHHHHHhccccccchHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 8875 999999999999864 45677888888 8888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+..++..+|.++...|+ +++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 168 ~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 168 RPESLLELAELYYLRGQ-YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999999 99999999999999998899999999999999999999999888776644
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4e-21 Score=190.28 Aligned_cols=230 Identities=15% Similarity=0.167 Sum_probs=200.6
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh---------------------------------
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------------------------------- 227 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------------- 227 (436)
+|...|..-...-. +.+-....+|..++.+++|++|+++|+.+-+.
T Consensus 337 ~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~ 415 (638)
T KOG1126|consen 337 EALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID 415 (638)
T ss_pred HHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 45555555222222 45566678999999999999999999886544
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 228 -YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 228 -~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
+|+.++.|..+|+||--+++++.|+++|++|++++|.+..+|-.+|.=+.... +++.|..+|++|+..+|.+..+|+.
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e-e~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE-EFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH-HHHhHHHHHHhhhcCCchhhHHHHh
Confidence 45677889999999999999999999999999999999999999998777776 4999999999999999999999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
+| .+|.++++++.|+-.|++|++++|.+......+|.++.++|+ .++|+.+|++|+.
T Consensus 495 lG----------------------~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 495 LG----------------------TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIH 551 (638)
T ss_pred hh----------------------hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHh
Confidence 99 899999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 387 ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 387 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
++|.++...+..|.+++.++++++|+..+++..++.|+---... .+.+|
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887544332 44443
No 18
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=5.4e-20 Score=190.99 Aligned_cols=189 Identities=13% Similarity=0.069 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK---------GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
+++++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~- 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE- 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-
Confidence 4578999999999999999999999999887643 348999999999999999999999999999888875
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+++|+.+|+++++++|+++.+++.+| .++...|++++|+..++++++++|.++..+..
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg----------------------~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYG----------------------WNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 99999999999999999999999999 55555666666666666666666666555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++.+++..|+ +++|+..+++++... |+++.++..+|.++..+|++++|...++++....|.
T Consensus 412 ~~~~~~~~g~-~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 412 KLWITYYHTG-IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHHhccC-HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 5555555665 666666666666553 555555666666666666666666666665555544
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=2.2e-19 Score=171.97 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=171.7
Q ss_pred HHHHhhcC---CCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 184 MYLAMGLG---ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 184 ~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
..+...+. +++...+..|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444443 333344677999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++|++..+|.++|.+++..++ +++|+..|+++++++|+++.... +. .+....++++
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~~P~~~~~~~-~~----------------------~l~~~~~~~~ 182 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQDDPNDPYRAL-WL----------------------YLAESKLDPK 182 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHH-HH----------------------HHHHccCCHH
Confidence 999999999999999998875 99999999999999999974221 11 2334567899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA-------VQASPADSHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 413 (436)
+|+..|.+++...+.+ .|. ++.+...+|+ +.++ ..++.+ +++.|...++|+.+|.++..+|++++|+.
T Consensus 183 ~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~-~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 183 QAKENLKQRYEKLDKE--QWG-WNIVEFYLGK-ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHHhhCCcc--ccH-HHHHHHHccC-CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999998776554322 232 4566666666 5433 233333 35667777899999999999999999999
Q ss_pred HHHHHHhhCC-CChhHH
Q 013800 414 SSDQFQQVAP-IRQGAV 429 (436)
Q Consensus 414 ~~~~al~l~p-~~~~a~ 429 (436)
+|+++++++| +|.+..
T Consensus 258 ~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 258 LFKLALANNVYNFVEHR 274 (296)
T ss_pred HHHHHHHhCCchHHHHH
Confidence 9999999985 665533
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=1.5e-19 Score=187.79 Aligned_cols=214 Identities=8% Similarity=-0.025 Sum_probs=192.4
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhh---------hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMP---------NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRA 251 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 251 (436)
.+..++.+++.++| +++.+|..+|.++. ..+++++|+..++++++++|+++.++..+|.++...|++++|
T Consensus 279 ~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 279 QALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 66788999999999 78888988887654 234589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
+..|+++++++|+++.+++.+|.++...|+ +++|+..++++++++|.++..+..++ .
T Consensus 358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~~~~~~~~~~----------------------~ 414 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPTRAAAGITKL----------------------W 414 (553)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCChhhHHHHH----------------------H
Confidence 999999999999999999999999999875 99999999999999999988777666 5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
+++..|++++|+..++++++.. |+++.++.++|.++..+|+ +++|+..+.+++...|....++..++.++...|+ +
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~-~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~ 491 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK-HELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--R 491 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--H
Confidence 6667899999999999999885 7889999999999999999 9999999999999999988889999999988884 7
Q ss_pred HHHHHHHHHhh
Q 013800 411 DSKSSDQFQQV 421 (436)
Q Consensus 411 A~~~~~~al~l 421 (436)
|...++++++.
T Consensus 492 a~~~l~~ll~~ 502 (553)
T PRK12370 492 ALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHHH
Confidence 77777776664
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=4.4e-19 Score=192.04 Aligned_cols=222 Identities=14% Similarity=0.065 Sum_probs=199.9
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
...+|.++...|++++|+..|++++...|.+ ..++.+|.++...|++++|+.+|+++++.+|.....+..++..+...+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 4455666678999999999999987776654 557888999999999999999999999999998877777766655556
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~ 348 (436)
++++|+..|+++++++|+ ..++.++|.++...|+.++|...+++++.. .++...|++++|+..|++
T Consensus 591 -r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 591 -QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred -CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 599999999999999996 899999999999999999999999988877 678899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
+++++|+++.+++++|.++..+|+ +++|+..|+++++++|++..+....|.++....+++.|.+.+.++..++|.-.
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999988755
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=5.6e-19 Score=154.88 Aligned_cols=205 Identities=22% Similarity=0.252 Sum_probs=192.4
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.+.+.+|.-|+..|++..|..-++++++.+|++..+|..+|.+|...|+.+.|.+.|++|+.++|++.++++++|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 279 LHRDQHRALTYFERAALA--APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
.++ +++|...|++|+.. .+.....+.++| .|..++|+++.|..+|+++++++|+.
T Consensus 116 qg~-~~eA~q~F~~Al~~P~Y~~~s~t~eN~G----------------------~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 116 QGR-PEEAMQQFERALADPAYGEPSDTLENLG----------------------LCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred CCC-hHHHHHHHHHHHhCCCCCCcchhhhhhH----------------------HHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 985 99999999999985 467889999999 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
+.....++..++..|+ |..|..++++.....+-....+.....+-...|+.+.+-++-.+.....|...+
T Consensus 173 ~~~~l~~a~~~~~~~~-y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 173 PPALLELARLHYKAGD-YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred ChHHHHHHHHHHhccc-chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999999999 999999999999888888888888889999999999998888888888887655
No 23
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.4e-19 Score=170.63 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=193.5
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.+...+|+.+...++.++|+.+|+++++++|....+|..+|.=|..+++...|++.|++|++++|.|-.+|+.+|..|..
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++. +.=|+-+|++|+++.|+|...|..|| .+|.+.++.++|+.+|++++.....+..
T Consensus 411 m~M-h~YaLyYfqkA~~~kPnDsRlw~aLG----------------------~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 411 MKM-HFYALYYFQKALELKPNDSRLWVALG----------------------ECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred hcc-hHHHHHHHHHHHhcCCCchHHHHHHH----------------------HHHHHhccHHHHHHHHHHHHhccccchH
Confidence 987 89999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQ-------ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++..||.++.++++ ..+|..+|++.++ ..|.-..+...|+..+.+.+++++|..+..+++.-.+.-.++..
T Consensus 468 ~l~~LakLye~l~d-~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~ 545 (559)
T KOG1155|consen 468 ALVRLAKLYEELKD-LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA 545 (559)
T ss_pred HHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999999999 9999999999998 44555678888999999999999999999999888777666654
No 24
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=177.27 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=184.1
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
-+..|..+++.|+..+|.-+|+.+++.+|+++++|..||.+....++-..|+..++++++++|++..++..||..|...+
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHccCchHH--HHHHHHHHHHhHHHHcCC
Q 013800 281 RDQHRALTYFERAALAAPQDSN--------------------ILAAYACFLWEMEDDGED--DKAQEEHIQVLPIQSKGD 338 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~--------------------~~~~la~~~~~~g~~~~A--~~~~~~~~~~~~~~~~g~ 338 (436)
- -.+|+.++.+-|...|.... .+..+...+......... .--++..+- .+|.-.|+
T Consensus 368 ~-q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG-VLy~ls~e 445 (579)
T KOG1125|consen 368 L-QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG-VLYNLSGE 445 (579)
T ss_pred h-HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH-HHHhcchH
Confidence 5 68899999998877653211 111111111111100000 000000000 88888999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
|++|+.+|+.||...|+|...|+.||..+..-.+ ..+|+..|++|+++.|....++++||..+..+|.|++|+++|-.+
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999998888 999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 013800 419 QQVAPI 424 (436)
Q Consensus 419 l~l~p~ 424 (436)
+.+.++
T Consensus 525 L~mq~k 530 (579)
T KOG1125|consen 525 LSMQRK 530 (579)
T ss_pred HHhhhc
Confidence 999766
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=2.2e-17 Score=177.80 Aligned_cols=246 Identities=13% Similarity=0.063 Sum_probs=151.0
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...+..++..++.+.+ .++.++..++.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+++
T Consensus 64 ~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 64 QWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 44455666666666666 56666667777777777777777777777777777766 66777777777777777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------------------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL------------------------------------------ 295 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~------------------------------------------ 295 (436)
+++..|+++.++..++.++...+ ..++|+..++++..
T Consensus 142 al~~~P~~~~~~~~la~~l~~~~-~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 142 ALPRAPQTQQYPTEYVQALRNNR-LSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 77777777777666666655443 36666655542110
Q ss_pred ----h---CCCCHH----H-----------------------------------HHHHHHHHHHccCchHHHHHHHHHHH
Q 013800 296 ----A---APQDSN----I-----------------------------------LAAYACFLWEMEDDGEDDKAQEEHIQ 329 (436)
Q Consensus 296 ----~---~p~~~~----~-----------------------------------~~~la~~~~~~g~~~~A~~~~~~~~~ 329 (436)
. +|.... + ...++.++...|++++|+..+++.++
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 1 111100 0 00122333333333333333332221
Q ss_pred H----------------hHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCCHHHHH
Q 013800 330 V----------------LPIQSKGDLEGAEEYFSRAILANPG---------------DGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 330 ~----------------~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
. .++.+.|++++|+..+++++...|. ...++..++.++...|+ +++|+
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~-~~eA~ 379 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND-LPQAE 379 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC-HHHHH
Confidence 1 1334556666666666666655542 12355667777777777 78888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
..+++++...|++..++..+|.++...|++++|++.+++++++.|+...
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 8888888888888888888888888888888888888888888877654
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=8.8e-18 Score=171.33 Aligned_cols=219 Identities=17% Similarity=0.210 Sum_probs=189.5
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
...++.++.++..|++++|+.++.++|+++|.++.+|+.||.+|..+|+.+++...+-.|-.++|.+.+.|..++.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 45677788888889999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------------------
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------------------------- 330 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------- 330 (436)
++. +.+|.-||.+||+.+|.+....+..+.++.++|+...|+..+.+.+..
T Consensus 220 ~~~-i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGN-INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred ccc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 875 999999999999999999999999999999999988888877632221
Q ss_pred --------------------------------------------------------------------------------
Q 013800 331 -------------------------------------------------------------------------------- 330 (436)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (436)
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence
Q ss_pred -------------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 013800 331 -------------------------------------------LPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKL 366 (436)
Q Consensus 331 -------------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 366 (436)
.++...|++.+|+.+|..++...+. +..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 6777888888999888888776553 46789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 367 ~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
|..+|. +++|++.|++++...|++.++...|+.++.++|+.++|++.+.+..
T Consensus 459 ~~~l~e-~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGE-YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhh-HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999 9999999999999999999999999999999999999888887755
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3e-18 Score=164.12 Aligned_cols=219 Identities=17% Similarity=0.224 Sum_probs=200.2
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.++..+-.-+..++.+++ .+...|+.++.+|+...+.++....|.++..++|+++++|+.+|++++-++++++|+..|+
T Consensus 340 g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 455566677788888888 5666799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
+++.++|++...+..++.+++++++ ++++...|+.+++.-|..++++...|.++.+++++++|.+.|..++..
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHK-IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999986 999999999999999999999999999999999999999999988776
Q ss_pred -------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 331 -------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 331 -------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
.++...+++.+|+.++++|++++|....++..||.+..++|+ .++|+++|+++..+.....+....
T Consensus 498 ~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~-i~eAielFEksa~lArt~~E~~~a 576 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK-IDEAIELFEKSAQLARTESEMVHA 576 (606)
T ss_pred ccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445556999999999999999999999999999999999999 999999999999988765554443
Q ss_pred H
Q 013800 398 Y 398 (436)
Q Consensus 398 l 398 (436)
+
T Consensus 577 ~ 577 (606)
T KOG0547|consen 577 Y 577 (606)
T ss_pred H
Confidence 3
No 28
>PLN02789 farnesyltranstransferase
Probab=99.81 E-value=1.1e-17 Score=160.35 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=180.4
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
.++..+-.++...+.+++|+..+.++|+++|++..+|..++.++..+| ++++++..+.++++.+|++..+|..++.++.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 344444446667788999999999999999999999999999999998 6799999999999999999999999998887
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 278 ELHRD-QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 278 ~~~~d-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
..+.. +++++.+++++++.+|++..+|...+ .++...|++++|++++.++|+.+|.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~----------------------w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQ----------------------WVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 77642 37889999999999999999999999 78888889999999999999999999
Q ss_pred HHHHHHHHHHHHHh---cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCCh
Q 013800 357 GEIMSQYAKLVWEL---HH---DHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 357 ~~~~~~la~~~~~~---g~---d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~ 426 (436)
..+|+.++.++... |+ ..++++.+..+++.++|++..+|..++.++.. +++..+|+..+.+++...|...
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 99999999888765 33 02478888889999999999999999999887 4556778888888888877766
Q ss_pred hHHh-hhhhc
Q 013800 427 GAVT-TANVY 435 (436)
Q Consensus 427 ~a~~-~an~y 435 (436)
.+.. ++.+|
T Consensus 256 ~al~~l~d~~ 265 (320)
T PLN02789 256 FALSDLLDLL 265 (320)
T ss_pred HHHHHHHHHH
Confidence 6554 65555
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.3e-18 Score=165.20 Aligned_cols=211 Identities=15% Similarity=0.119 Sum_probs=190.7
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+..|+.+|..|+..|++.+|.++|.++..++|....+|..+|..+...|..++|+..|.+|-++-|+...-..-+|.-
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME 389 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999999999987777778877
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC-
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP- 354 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p- 354 (436)
|...+. +..|..+|.+|+.+.|.++-++..+| .+.+..+.|.+|+.+|+.++..-+
T Consensus 390 y~~t~n-~kLAe~Ff~~A~ai~P~Dplv~~Elg----------------------vvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 390 YMRTNN-LKLAEKFFKQALAIAPSDPLVLHELG----------------------VVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHhcc-HHHHHHHHHHHHhcCCCcchhhhhhh----------------------heeehHhhhHHHHHHHHHHHHHhhh
Confidence 777765 99999999999999999999999999 888888999999999999984422
Q ss_pred ------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013800 355 ------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 355 ------~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
.-...+.+||.++.+++. +++|+..|+++|.+.|.+..++..+|.++..+|+.+.|++.|.++|.+.|+....
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 234568999999999999 9999999999999999999999999999999999999999999999999998665
Q ss_pred Hh
Q 013800 429 VT 430 (436)
Q Consensus 429 ~~ 430 (436)
.+
T Consensus 526 ~~ 527 (611)
T KOG1173|consen 526 SE 527 (611)
T ss_pred HH
Confidence 54
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-17 Score=158.89 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=172.5
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHH-------------------------------HHHHHHHHHcCCH
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLL-------------------------------RNYAQLLQKKGDL 248 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~-------------------------------~~la~~~~~~g~~ 248 (436)
..|.+.....++++|+..|+..++.+|-.. +.+ .-+|+.|...++.
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 456678888999999999999999888432 111 0134555566778
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
++|+.+|++|++++|....+|..+|.-|.++.+ ...|+..|++|++++|.|-.+|+.+|
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyRAWYGLG-------------------- 405 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYRAWYGLG-------------------- 405 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHHHHhhhh--------------------
Confidence 999999999999999999999999999999986 89999999999999999999999999
Q ss_pred HHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 329 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
..|.-++...-|+-+|++|+++.|+|...|..||.||.++++ .++|+++|.+++.....+..++..+|++|.++++.
T Consensus 406 --QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 406 --QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred --HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 888888999999999999999999999999999999999999 99999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 013800 409 EDDSKSSDQFQQV 421 (436)
Q Consensus 409 ~~A~~~~~~al~l 421 (436)
.+|..+|++.++.
T Consensus 483 ~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 483 NEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999883
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=6.1e-17 Score=174.33 Aligned_cols=249 Identities=12% Similarity=0.026 Sum_probs=192.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK------------- 244 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~------------- 244 (436)
++.++..++...+...+ .++. +..+|.++...|++++|+..|+++++.+|++..++..++.++..
T Consensus 98 ~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 98 QYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 44455566666666666 4555 66677777777777777777777777777666655555544433
Q ss_pred --------------------------------------------------------------------------cCCHHH
Q 013800 245 --------------------------------------------------------------------------KGDLYR 250 (436)
Q Consensus 245 --------------------------------------------------------------------------~g~~~~ 250 (436)
.|++++
T Consensus 176 ~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 176 ANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 344455
Q ss_pred HHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCchHHHHHHH
Q 013800 251 AEDYYNHATMADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD----SNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 251 A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
|+..|+++++..|..+ .+...+|.++...++ +++|+.+|+++++.+|.+ ......++.++...|++++|...++
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~-~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQ-PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5555555555432211 122335667777764 899999999988888765 4567778888899999999999977
Q ss_pred HHHHH---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013800 326 EHIQV---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 326 ~~~~~---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
+.... .++...|++++|++.+++++...|+++.++..+|.++...|+ +++|+
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~-~~~A~ 413 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW-PRAAE 413 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHH
Confidence 54431 577889999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+.+++++.++|++..++..+|.++..+|++++|...++++++..|+......
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999887655
No 32
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.2e-17 Score=160.29 Aligned_cols=249 Identities=16% Similarity=0.094 Sum_probs=212.6
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+++..+|..++.+++ .+..-|.+....+..+|+|++|+..-.+.++++|+-+..|..+|..+.-+|+|++|+..|.+
T Consensus 17 d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred cHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 66688999999999999 58888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHH------------------------------------------------------------------
Q 013800 258 ATMADPGDGESWMQ------------------------------------------------------------------ 271 (436)
Q Consensus 258 al~~~p~~~~~~~~------------------------------------------------------------------ 271 (436)
.++.+|.+...+..
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 99998887433333
Q ss_pred ------------------------------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 272 ------------------------------------------------------YAKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 272 ------------------------------------------------------la~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
+|...+... ++..|+++|.+++.++
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk-~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK-DFETAIQHYAKALELA 254 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh-hHHHHHHHHHHHHhHh
Confidence 343333333 3578899999999998
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------------------------------------
Q 013800 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------------------------------------- 330 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------------------------------------- 330 (436)
.+...+.+.+-++...|.+...+.....+++.
T Consensus 255 -~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 -TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred -hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 77777777777777776665554444322111
Q ss_pred --------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013800 331 --------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 331 --------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
..++..|+|..|+..|.++|..+|+++.+|.|+|.||..+|. +..|+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~-~~~aL 412 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE-YPEAL 412 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh-HHHHH
Confidence 778889999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..++++++++|+...+|...|.++..+.+|++|++.|.++++.+|...+...
T Consensus 413 ~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 413 KDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAID 464 (539)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 9999999999999999999999999999999999999999999998766544
No 33
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=5.3e-18 Score=155.12 Aligned_cols=225 Identities=13% Similarity=0.093 Sum_probs=207.9
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
..+|.+|+++|-+.+|.+.++.+++..| .++.+..++.+|.+..+...|+..|...+...|.+...+..+|.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4689999999999999999999999988 788999999999999999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRA 349 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~a 349 (436)
+++|+++|+.+++.+|.+.++...++..++..++.+-|+..|++.++. .+.+..++++-++..|++|
T Consensus 306 -~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 -QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred -HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999988877 6777789999999999999
Q ss_pred HHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 350 ILANP---GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 350 l~~~p---~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
+.... .-.++|+++|.+....|+ +.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-.+.|+..
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccc-hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 98743 236899999999999999 99999999999999999999999999999999999999999999999999876
Q ss_pred hHH
Q 013800 427 GAV 429 (436)
Q Consensus 427 ~a~ 429 (436)
+..
T Consensus 464 E~~ 466 (478)
T KOG1129|consen 464 EVT 466 (478)
T ss_pred ccc
Confidence 643
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=1.6e-18 Score=164.97 Aligned_cols=217 Identities=22% Similarity=0.240 Sum_probs=121.6
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+.+...+.+.+..++ .....+..++.+ ...+++++|+.+++++.+..+ ++..+..+..++...++++++...+++
T Consensus 59 ~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666777777666 456666666666 688999999999999888764 567778888889999999999999999
Q ss_pred HHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 258 ATMAD--PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 258 al~~~--p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
+.... +.++.+|..+|.++...|+ +++|+.+|+++++++|++..++..++ .++..
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~P~~~~~~~~l~----------------------~~li~ 192 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGD-PDKALRDYRKALELDPDDPDARNALA----------------------WLLID 192 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH-TT-HHHHHHHH----------------------HHHCT
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHH
Confidence 87765 6788999999999888875 99999999999999999999999999 88888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
.|+++++.+.+....+..|.++..|..+|.++..+|+ +++|+.+|++++..+|+++.++..+|.++...|+.++|..++
T Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999988889999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 013800 416 DQFQQV 421 (436)
Q Consensus 416 ~~al~l 421 (436)
++++..
T Consensus 272 ~~~~~~ 277 (280)
T PF13429_consen 272 RQALRL 277 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 998753
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=5.9e-19 Score=167.97 Aligned_cols=222 Identities=19% Similarity=0.206 Sum_probs=96.9
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
+.++...|++++|++.+++.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+ +
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~-~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG-D 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-c
Confidence 33444445555555555433322 244445555555555555555555555555555555544444444444 2222 2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~ 348 (436)
+++|+.+++++.+..+ ++..+..+..++...++++++...+...... .++.+.|++++|+.+|++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555444332 2333444444444555555555444432221 888899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
+++.+|++..++..++.++...|+ ++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|+....
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGD-YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 999999999999999999999999 9999999999998888889999999999999999999999999999999976665
Q ss_pred Hh
Q 013800 429 VT 430 (436)
Q Consensus 429 ~~ 430 (436)
..
T Consensus 251 ~~ 252 (280)
T PF13429_consen 251 LL 252 (280)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=2.4e-17 Score=144.75 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
.+...||.-|+..|++..|..-+++|++.+|.+..+|..+|.+|...|. .+.|.+.|++|+.++|++.++++++|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge-~~~A~e~YrkAlsl~p~~GdVLNNYG---- 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE-NDLADESYRKALSLAPNNGDVLNNYG---- 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hhhHHHHHHHHHhcCCCccchhhhhh----
Confidence 6788999999999999999999999999999999999999999888875 99999999999999999999999999
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
..++.+|++++|...|++|+.. .+..+.+|.|+|.|..+.|+ ++.|..+|+++++++|+
T Consensus 111 ------------------~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 111 ------------------AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQ 171 (250)
T ss_pred ------------------HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcC
Confidence 7788899999999999999975 45668899999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
.+.....++..++..|++..|..++++....-+
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 999999999999999999999999999887655
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=1.2e-16 Score=146.05 Aligned_cols=173 Identities=22% Similarity=0.258 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
.+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...++ +++|+..|+++++..|.+..++..++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~-- 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE-LEKAEDSFRRALTLNPNNGDVLNNYG-- 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHH--
Confidence 367899999999999999999999999999999999999999999999875 99999999999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
.++...|++++|+..|++++... +.....+..+|.++...|+ +++|+..|.+++..+
T Consensus 107 --------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 107 --------------------TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQID 165 (234)
T ss_pred --------------------HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Confidence 88889999999999999999854 5567889999999999999 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
|++..++..++.++...|++++|+..+++++.+.|....
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999998766444
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=6.1e-16 Score=154.39 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=170.7
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
+......|+++.|..+|.++.+.+|++.. .....+.++...|++++|+..++++.+.+|+++.++..++.+|...+ ++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g-dw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG-AW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hH
Confidence 44446667777777777777777776542 23344677777777777777777777777777777777777776665 37
Q ss_pred HHHHHHHHHHH------------------------------------------HhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 284 HRALTYFERAA------------------------------------------LAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 284 ~~A~~~~~~al------------------------------------------~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
++|++.+.+.. +..|+++.++..++..+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77664444433 233557788889999999999999999
Q ss_pred HHHHHHHHH---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 322 KAQEEHIQV---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 322 ~~~~~~~~~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
..+++.++. ......++.+++++.+++.++.+|+++..+..+|.++...++ +++|.+.|+++++..|++
T Consensus 284 ~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~-~~~A~~~le~al~~~P~~- 361 (398)
T PRK10747 284 QIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE-WQEASLAFRAALKQRPDA- 361 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCH-
Confidence 999988877 223345999999999999999999999999999999999999 999999999999999995
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 393 HVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
..+..++.++.++|+.++|.++|++++.+.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456789999999999999999999998764
No 39
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.76 E-value=5.1e-17 Score=149.56 Aligned_cols=230 Identities=14% Similarity=0.113 Sum_probs=163.3
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LL------------LRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
.+.+..|.+++++|++++|+..|++.+..+|.+. ++ +......+...|++..|+++..+.+++.|
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 4455555556666666666666666665555321 11 11222233344555666666666666666
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------
Q 013800 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------- 330 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------- 330 (436)
-++..+...+.||...+. ...|+..++.+-++..++.+.++.++.+++..|+.+.++..++++++.
T Consensus 187 Wda~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred chhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 666666667777666653 777777777777777777777777777777777777777777766554
Q ss_pred -----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 331 -----------LPIQSKGDLEGAEEYFSRAILANPGDGEI----MSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 331 -----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
......++|.++++..++.++.+|..+.+ ...+..|+..-++ +.+|+..+.++|+.+|++..++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHhcCchHHHHH
Confidence 44455678888888888888888875443 3445666777788 9999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
...|.+|.-...|++|+..|+++++.++....+..
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999998877654
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.6e-16 Score=163.16 Aligned_cols=248 Identities=15% Similarity=0.138 Sum_probs=210.0
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
++...+...+.-.+ ++.-++.+.+.+.+..++|-.|+.+|++++.++|... +....+|.|+.++|+.+.|+..|.+++
T Consensus 148 ~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHH
Confidence 55566666666666 5666777788888888999999999999999998654 777888999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 260 MADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++|.+..++..||.+-.... ..+..++..+.++...++.+|.++..|+.-++..|++..+..+...+++.
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ 306 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK 306 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999998887655432 13778999999999999999999999999999999999999888866554
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 --------LPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.|..+|+|++|..+|.++++.++++ .-.++.+|+++...|+ ++.|+.+|+++++..|++.+....+|.+
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d-le~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD-LEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch-HHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 78888999999999999999999988 7788899999999999 9999999999999999999999999999
Q ss_pred HHHCC----ChHHHHHHHHHHHhhCCCChhHHh
Q 013800 402 LWETE----EDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 402 ~~~~g----~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
|...+ ..+.|..+..+++...|.-..+..
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 88875 567888888998888766555433
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=9.2e-16 Score=153.77 Aligned_cols=240 Identities=12% Similarity=0.018 Sum_probs=168.0
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
++..+...+.++....+ .....+...+.+....|+++.|..+|+++.+..|+.. .+...++.++...|++++|++.++
T Consensus 99 ~~~~A~~~l~~~~~~~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555555555 3444555556666666666666666666666666553 344455666666666666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------------------HhCC
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA--------------------------------------LAAP 298 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al--------------------------------------~~~p 298 (436)
+.++..|+++.++..++.++...++ +++|++.+.+.. ...|
T Consensus 178 ~l~~~~P~~~~~l~ll~~~~~~~~d-~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 178 KLLEMAPRHKEVLKLAEEAYIRSGA-WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 6666666666666666666666553 655555444433 3344
Q ss_pred ----CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCH--H
Q 013800 299 ----QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDG--E 358 (436)
Q Consensus 299 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~--~ 358 (436)
+++.++..++..+...|+.++|...+++.++. ......++.+.+++.++++++.+|+++ .
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence 46777788888888888888888888877776 112334677888888888888889888 8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFE--RAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.+..+|+++++.|+ +++|.++|+ ++++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 337 ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 337 INRALGQLLMKHGE-FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888999988888 999999988 57778887544 558889999999999999998887654
No 42
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=4.4e-17 Score=159.51 Aligned_cols=209 Identities=13% Similarity=0.091 Sum_probs=184.5
Q ss_pred CChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
.++.+.|..++.-+| ....+|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|..++.+.|
T Consensus 302 ~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred hHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 356677888888888 7899999999999999999999999999999999999999999999999999999999988887
Q ss_pred HhCC-------------------------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 260 MADP-------------------------------------------GDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 260 ~~~p-------------------------------------------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
...| .++++...||.+|+-. ++|++|+.||+.||..
T Consensus 381 ~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls-~efdraiDcf~~AL~v 459 (579)
T KOG1125|consen 381 RNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS-GEFDRAVDCFEAALQV 459 (579)
T ss_pred HhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc-hHHHHHHHHHHHHHhc
Confidence 6543 2377888899665555 4699999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 013800 297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK 376 (436)
Q Consensus 297 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~ 376 (436)
.|++...|..|| ..+....+.++|+..|.+|+++.|....++++||..++.+|. |.+
T Consensus 460 ~Pnd~~lWNRLG----------------------AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykE 516 (579)
T KOG1125|consen 460 KPNDYLLWNRLG----------------------ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKE 516 (579)
T ss_pred CCchHHHHHHhh----------------------HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHH
Confidence 999999999999 888888999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCChHHHHH
Q 013800 377 ALCYFERAVQASPA----------DSHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 377 A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~ 413 (436)
|.++|-.||.+.+. +..+|..|-.++..+++.+-+..
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999987654 12578888888888888875543
No 43
>PLN02789 farnesyltranstransferase
Probab=99.75 E-value=3.1e-16 Score=150.41 Aligned_cols=228 Identities=13% Similarity=0.107 Sum_probs=194.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD-DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL--YRAEDY 254 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~--~~A~~~ 254 (436)
....+...+..++.+.+ .+..+|...|.++..+| ++++++..+.++++.+|++..+|..++.++...|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 45577888899999999 89999999999999998 689999999999999999999999999999998874 788999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013800 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 334 (436)
++++++.+|++..+|..++.++...+. +++|++++.++|+.+|.+..+|+..+.++...+... .
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~---------------~ 194 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG---------------G 194 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc---------------c
Confidence 999999999999999999999999975 999999999999999999999999995554332100 0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE---- 406 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---- 406 (436)
.....++++.+..++|..+|++..+|++++.++.. +++ ..+|+..+.+++...|.+..++..|+.++....
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 01123578899999999999999999999999988 455 577999999999999999999999999998642
Q ss_pred --------------ChHHHHHHHHHHHhhCC
Q 013800 407 --------------EDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 407 --------------~~~~A~~~~~~al~l~p 423 (436)
..++|.+++...-..+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 23567777777654444
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=1.3e-15 Score=152.74 Aligned_cols=232 Identities=14% Similarity=0.048 Sum_probs=198.4
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-ESWMQYAKLVWEL 279 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 279 (436)
....|.+....|+++.|.+.+.++.+..|+....+...|.++...|++++|..++.++.+..|++. .+...++.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 345677888899999999999999999998888889999999999999999999999999999985 5666779888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------------------
Q 013800 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------------------- 330 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------------------- 330 (436)
++ +++|...++++++..|+++.++..++.++...|+++++...+.+..+.
T Consensus 167 ~~-~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 167 NE-LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 75 999999999999999999999999999999999999888877633321
Q ss_pred -------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 013800 331 -------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIM--SQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 331 -------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
..+...|++++|++.++++++..|++.... ..........++ .+++++.+++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e~ 324 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED-NEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC-hHHHHHHHHH
Confidence 678888999999999999999999987532 222333334455 8999999999
Q ss_pred HHHhCCCCH--HHHHHHHHHHHHCCChHHHHHHHH--HHHhhCCCChhHHhhhhh
Q 013800 384 AVQASPADS--HVLAAYACFLWETEEDEDDSKSSD--QFQQVAPIRQGAVTTANV 434 (436)
Q Consensus 384 al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~l~p~~~~a~~~an~ 434 (436)
+++..|+++ .++..+|+++++.|++++|.++|+ ++++..|+.......+.+
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADA 379 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHH
Confidence 999999999 889999999999999999999999 577788887765544444
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=4.6e-16 Score=148.98 Aligned_cols=200 Identities=14% Similarity=0.026 Sum_probs=155.0
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...+...+..++.+.+ .++.+|..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|++.|++
T Consensus 79 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 79 LRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33467778999999999 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
+++.+|+++.....+ .+ ....+++++|+..|.+++...+.+ .|. ++ .++...|
T Consensus 158 al~~~P~~~~~~~~~-~l-~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~----------------------~~~~~lg 210 (296)
T PRK11189 158 FYQDDPNDPYRALWL-YL-AESKLDPKQAKENLKQRYEKLDKE--QWG-WN----------------------IVEFYLG 210 (296)
T ss_pred HHHhCCCCHHHHHHH-HH-HHccCCHHHHHHHHHHHHhhCCcc--ccH-HH----------------------HHHHHcc
Confidence 999999998422222 12 233346999999998877654332 222 34 2223334
Q ss_pred CHHH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCC
Q 013800 338 DLEG------AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-ADSHVLAAYACFLWETE 406 (436)
Q Consensus 338 ~~~~------A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 406 (436)
++.+ +.+.++..+++.|..+++|+++|.++...|+ +++|+.+|+++++.+| +..+..+.+..+....+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 211 KISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-LDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred CCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 4322 2233344456677888999999999999999 9999999999999997 65666665655544433
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=4.5e-16 Score=147.86 Aligned_cols=226 Identities=19% Similarity=0.134 Sum_probs=187.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+..++..|-..++.+++ =++.+..+.|++.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+
T Consensus 471 ~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred chhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 45577778888888888 57888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
.-.+--++.++++.++.+|..+. +..+|+++|.++..+-|+++.++..|+.+|-..|+..+|.+.+-+.+.-
T Consensus 550 lh~il~nn~evl~qianiye~le-d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLE-DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhh-CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 99999999999999999998887 4999999999999999999999999997777777776666654432221
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
..|....-+++|+.+|+++--+.|+.......++.|+.+.|+ |++|.+.|+......|.+.+.+..|..+.-.+
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn-yqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN-YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 445566667777777777777777777777777777777777 77777777777777777777776666666665
Q ss_pred C
Q 013800 406 E 406 (436)
Q Consensus 406 g 406 (436)
|
T Consensus 708 g 708 (840)
T KOG2003|consen 708 G 708 (840)
T ss_pred c
Confidence 5
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.9e-16 Score=150.18 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=209.2
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
.+.....+..++..++|.+-.++.+..++.+|-+..++...-.++...|+..+=...-.+.+...|+.+..|+..|..|+
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 45566677788899999999999999999999988777655559999999888888888999999999999999998888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHH
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~ 345 (436)
..++ +.+|..+|-|+..++|....+|..+|..+...+.-++|+..|..+.+. .-|.+.+++.-|..+
T Consensus 324 ~i~k-~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGK-YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcC-cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 8865 999999999999999999999999999999999999999999987776 567778999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA-------DSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
|.+|+.+.|.++-++..+|.+.+..+. |.+|..+|+.+++.-+. ....+.+||.++.+++.+++|+.+|+++
T Consensus 403 f~~A~ai~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999953322 2345899999999999999999999999
Q ss_pred HhhCCCChhHHh-hhhhc
Q 013800 419 QQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 419 l~l~p~~~~a~~-~an~y 435 (436)
+.+.|.+..... +|-+|
T Consensus 482 L~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIY 499 (611)
T ss_pred HHcCCCchhHHHHHHHHH
Confidence 999999888776 44444
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.72 E-value=1.4e-15 Score=140.21 Aligned_cols=216 Identities=13% Similarity=0.096 Sum_probs=188.4
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
-...+|.-++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-..|+..+.+++++.|+...+....|.++.++
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 34555666667799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 280 HRDQHRALTYFERAALAAPQDSNI---LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
|. +++|+..|+++++-+|.+... .-.++.+. +-..+..+ + ..+...|++..|+++....|++.|-+
T Consensus 120 Ge-le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~-------e~~~l~~q-l--~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 120 GE-LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ-------EHWVLVQQ-L--KSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred cc-HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH-------HHHHHHHH-H--HHHhcCCchhhHHHHHHHHHhcCcch
Confidence 86 999999999999999965433 33333111 00111100 0 45667899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
+..+...+.||...|+ ...|+..++.+-++..++.+.++.++.+++..|+.+.++...+.++.++|++..
T Consensus 189 a~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred hHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999754
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.2e-15 Score=156.99 Aligned_cols=253 Identities=17% Similarity=0.181 Sum_probs=214.9
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD--SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
.+..+|..+-.++- .....|..-+..+...++ ++.|...|...+...|++..+++..|.+.+..++|..|+.+|+++
T Consensus 112 ~at~~~~~A~ki~m-~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~a 190 (1018)
T KOG2002|consen 112 KATLLFDLADKIDM-YEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKA 190 (1018)
T ss_pred HHHHHhhHHHHhhc-cCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 56677777776666 344455555555555555 499999999999999999999999999999999999999999999
Q ss_pred HHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc---hHHHHHHHHHHHH----
Q 013800 259 TMADPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD---GEDDKAQEEHIQV---- 330 (436)
Q Consensus 259 l~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~---- 330 (436)
+.++|. -++....+|.|++.++. .+.|+..|+++++++|.++.++..||.+.....+. ..+...+.+++..
T Consensus 191 l~inp~~~aD~rIgig~Cf~kl~~-~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 191 LRINPACKADVRIGIGHCFWKLGM-SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HhcCcccCCCccchhhhHHHhccc-hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 999997 46777888999999986 99999999999999999999999999888777665 4455555555444
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHH
Q 013800 331 --------LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAY 398 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~-~~~~~~l 398 (436)
..++-.|+|+.+..+...++...-. -.+.++.+|+++..+|+ |++|..+|.++++.+|++ ...++.+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd-~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD-FEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccCCCCccccccch
Confidence 6677789999999999999987633 35669999999999999 999999999999999998 7788999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013800 399 ACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA 436 (436)
Q Consensus 399 a~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ya 436 (436)
|+.++..|+.+.++.+|++++...|+..+... ++.+||
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 99999999999999999999999999887665 776664
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=3.6e-15 Score=149.41 Aligned_cols=223 Identities=19% Similarity=0.172 Sum_probs=190.8
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------- 261 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 261 (436)
...+...++..+..+|+|+.|+..++.++++ .|.-......+|.+|..++++.+|+..|++|+.+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3466677999999999999999999999998 5655566677999999999999999999999986
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--
Q 013800 262 -DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-- 330 (436)
Q Consensus 262 -~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 330 (436)
+|..+.++.+||.+|...|+ +++|..++++|+++. |.-...+.+++.++...+.+++|..+++..++.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GK-f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGK-FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 34456789999999988875 999999999999874 233456678899999999999999999976665
Q ss_pred ------------------hHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 331 ------------------LPIQSKGDLEGAEEYFSRAILAN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 331 ------------------~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
.+|..+|++++|.++|++|+.+. +.....++.+|..+.+.++ +.+|...|.++
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~ 435 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEA 435 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 89999999999999999999874 3346788999999999998 99999999998
Q ss_pred HHhC----C---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 385 VQAS----P---ADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 385 l~~~----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+.+. | +-...+.+|+.+|..+|++++|+++..+++..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 7653 3 33478899999999999999999999998854
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=5.5e-15 Score=136.86 Aligned_cols=180 Identities=14% Similarity=0.057 Sum_probs=142.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN-- 302 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~-- 302 (436)
++..+..++.+|..+...|++++|+..|++++..+|.++ .+++.+|.++...++ +++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD-YAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCchH
Confidence 345567888888888888888888888888888888765 567888888888764 88888888888888887665
Q ss_pred -HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHH
Q 013800 303 -ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM-----------------SQYA 364 (436)
Q Consensus 303 -~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la 364 (436)
+++.+|.++..... .++...|++++|++.|++++..+|++..++ ..+|
T Consensus 108 ~a~~~~g~~~~~~~~--------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 108 YAYYLRGLSNYNQID--------------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred HHHHHHHHHHHHhcc--------------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777744433200 222334889999999999999999886443 3678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 365 KLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
.+++..|+ +.+|+..|++++...|+. ..+++.++.++..+|++++|..+++......|
T Consensus 174 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 174 RFYLKRGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88999999 999999999999997764 58999999999999999999999888776655
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=2.6e-14 Score=152.37 Aligned_cols=249 Identities=13% Similarity=0.014 Sum_probs=188.6
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...+..++.+++.-.+ ........+|.++...|++++|+++|+++++.+|+++.++..++.++...++.++|++.+++
T Consensus 83 ~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 83 RDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred CcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 44577888888883223 34455555688999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH---------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI--------- 328 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------- 328 (436)
++..+|.+... ..++.++...++ ..+|+..|+++++.+|++..++..+..++...|-...|.++..+..
T Consensus 162 l~~~dp~~~~~-l~layL~~~~~~-~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~ 239 (822)
T PRK14574 162 LAERDPTVQNY-MTLSYLNRATDR-NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYR 239 (822)
T ss_pred hcccCcchHHH-HHHHHHHHhcch-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHH
Confidence 99999996655 556666655554 7679999999999999999999999999999988877777665100
Q ss_pred ---------------------------------------HH---------------------------------------
Q 013800 329 ---------------------------------------QV--------------------------------------- 330 (436)
Q Consensus 329 ---------------------------------------~~--------------------------------------- 330 (436)
..
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~ 319 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00
Q ss_pred ---------------h----------------------------------------HHHHcCCHHHHHHHHHHHHHhCC-
Q 013800 331 ---------------L----------------------------------------PIQSKGDLEGAEEYFSRAILANP- 354 (436)
Q Consensus 331 ---------------~----------------------------------------~~~~~g~~~~A~~~~~~al~~~p- 354 (436)
. .+...+++++|..++++..+..|
T Consensus 320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 2 23334455555555555444222
Q ss_pred --------------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 355 --------------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 355 --------------~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
+..++...++.++...|+ +.+|++.+++.+...|.|+.++..+|.++...|.+.+|...++.++.
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 223455667777777777 88888888888888888888888888888888888888888877777
Q ss_pred hCCCChhHHh
Q 013800 421 VAPIRQGAVT 430 (436)
Q Consensus 421 l~p~~~~a~~ 430 (436)
+.|....+..
T Consensus 479 l~P~~~~~~~ 488 (822)
T PRK14574 479 LAPRSLILER 488 (822)
T ss_pred hCCccHHHHH
Confidence 7777655443
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=1.6e-15 Score=129.25 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=83.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 218 EEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 218 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
..+|+++++++|++ +..+|.++...|++++|+.+|++++.++|.+..+|..+|.++...++ +++|+.+|++++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-YTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcC
Confidence 45566666666653 44566666667777777777777776677666666666666666654 666666666666666
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
|+++.+++++| .++...|++++|+..|++++++.|+++..+.+++.+...
T Consensus 89 p~~~~a~~~lg----------------------~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTG----------------------VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 66666666666 666666666666666666666666666666666665544
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68 E-value=1e-14 Score=135.16 Aligned_cols=187 Identities=14% Similarity=0.077 Sum_probs=152.2
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE---SWM 270 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 270 (436)
....+..+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 446677788888888999999999999999999876 68899999999999999999999999999998765 789
Q ss_pred HHHHHHHHHc-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 271 QYAKLVWELH-------RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 271 ~la~~~~~~~-------~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
.+|.+++... +++++|+..|++++..+|++..++..+..+....+...... .....++...|++.+|+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~-----~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKE-----LYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCChHHHH
Confidence 9999988751 24899999999999999998776644443322211111000 00017788999999999
Q ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 344 EYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 344 ~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
..|++++...|+. +++++.+|.++..+|+ +++|..+++......|
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGL-KDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Confidence 9999999997764 6899999999999999 9999999888776655
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-14 Score=137.35 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=195.2
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL----------------------------------LRNYAQL 241 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~----------------------------------~~~la~~ 241 (436)
.+....+.+|.+++..|++.+|+..|+++.-++|.+... |+.-+..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 566778888999999999999999999998888866544 3333444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
++..+++..|+.+.+++|..+|.+..++...|.++...++ .++|+-.|+.|..+.|-+-+.+..+..+|...|.+.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R-~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER-HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc-hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 4555667788888888888888888888888888888886 888888899998888888888888888888888888888
Q ss_pred HHHHHHHHH-----hH---------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 322 KAQEEHIQV-----LP---------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 322 ~~~~~~~~~-----~~---------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
-.....++. .. +....--++|.+.++++++++|....+...+|.++...|. +.+++.++++++..
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~-~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP-TKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc-cchHHHHHHHHHhh
Confidence 888766665 22 2223345899999999999999999999999999999999 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.|+ ...+..||.++..++.+++|+.+|..++.++|+...+..
T Consensus 468 ~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 468 FPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred ccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 988 567899999999999999999999999999999776543
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=3.5e-14 Score=141.70 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=186.8
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNY-AQLLQKKGDLYRAEDYYNHATMADPGDGESW-MQYAKLVW 277 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~ 277 (436)
.....|.+....|+++.|++.+.+.-+..+ ++..++.+ +.+....|+++.|..+|.++.+.+|++.... ...+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 345567777788999999988887666543 34444444 6666999999999999999999999986444 34477877
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------------
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------------- 330 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------------- 330 (436)
..+ ++++|+..++++++..|+++.++..++.++...|+++++..++....+.
T Consensus 165 ~~g-~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 165 ARN-ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776 5999999999999999999999999999999999999999655522210
Q ss_pred ---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 331 ---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 331 ---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
..+...|+.++|...++++++. +.++.....++.+ ..++ .+++++.+++
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~-~~~al~~~e~ 319 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNN-PEQLEKVLRQ 319 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCC-hHHHHHHHHH
Confidence 6777889999999999999995 4456655555554 3367 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhh
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANV 434 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~an~ 434 (436)
.++.+|+++..+..+|.++...+++++|.++|++++++.|+.......+.+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~ 370 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADA 370 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997764444433
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7.6e-16 Score=145.15 Aligned_cols=244 Identities=11% Similarity=0.015 Sum_probs=202.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
.+.++.-.+..++.+.+ +++..|.+.+..++..|+|++|.-.+++.++++|.....+...++++..+++..+|.+.++.
T Consensus 64 ~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 77788888999999998 77888999999999999999999999999999888887777788888777777777655542
Q ss_pred HH------------HhC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchH
Q 013800 258 AT------------MAD------PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 258 al------------~~~------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 319 (436)
.- .+- |....+...-+.|+...+ ++++|...--..+++++.+.++++..|.++...++.+.
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~-~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~k 221 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG-DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADK 221 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc-cchhHHHHHHHHHhcccchhHHHHhcccccccccchHH
Confidence 21 001 222334455566666665 48888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH------------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhc
Q 013800 320 DDKAQEEHIQV------------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQYAKLVWELH 371 (436)
Q Consensus 320 A~~~~~~~~~~------------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g 371 (436)
+...+++.+.. .-.++.|++..|.++|..+|.++|++ +..|.++|.+...+|
T Consensus 222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg 301 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG 301 (486)
T ss_pred HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence 88888765544 66778899999999999999999975 567999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 372 HDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
+ ..+|+..+..++.+++....++...|.++..++++++|++.|++++++...
T Consensus 302 r-l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 302 R-LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred C-chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9 999999999999999999999999999999999999999999999998655
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1.6e-14 Score=142.87 Aligned_cols=243 Identities=18% Similarity=0.183 Sum_probs=210.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+-.++.++....+ ....|+.-.++..-+++.++|+.+++++++..|+....|+++|+++.++++.+.|.+.|..
T Consensus 633 e~eraR~llakar~~sg--TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 633 ELERARDLLAKARSISG--TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred cHHHHHHHHHHHhccCC--cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 55667778888777554 5678888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
.++..|.....|..++.+-...++ .-+|...++++.-.+|++...|.....+..+.|+.+.|...+.++++.
T Consensus 711 G~k~cP~~ipLWllLakleEk~~~-~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 711 GTKKCPNSIPLWLLLAKLEEKDGQ-LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred ccccCCCCchHHHHHHHHHHHhcc-hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 999999999999999988777775 999999999999999999999999999999999999988888888876
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.+.-.-++ ...+..|++....|+.++...|..++...+ +++|.+.|.+++.++|+++++|..+-.++...
T Consensus 790 WaEaI~le~~~~r----kTks~DALkkce~dphVllaia~lfw~e~k-~~kar~Wf~Ravk~d~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 790 WAEAIWLEPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEKK-IEKAREWFERAVKKDPDNGDAWAWFYKFELRH 864 (913)
T ss_pred HHHHHHhccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHccCCccchHHHHHHHHHHHh
Confidence 11111122 233455666677889999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhH
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a 428 (436)
|..++-.++|.++..-.|.|...
T Consensus 865 G~eed~kev~~~c~~~EP~hG~~ 887 (913)
T KOG0495|consen 865 GTEEDQKEVLKKCETAEPTHGEL 887 (913)
T ss_pred CCHHHHHHHHHHHhccCCCCCcH
Confidence 99999999999999999998763
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=2.3e-15 Score=128.31 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=114.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
..+|+++++++|++ +..+|.++...|+ +++|+.+|++++.++|.+..++..+| .
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg----------------------~ 66 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGD-YSRAVIDFSWLVMAQPWSWRAHIALA----------------------G 66 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH----------------------H
Confidence 56889999999885 5678888888875 99999999999999999999999999 8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
++...|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+..|++++.+.|+++..+.+++.+...+
T Consensus 67 ~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 67 TWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999 99999999999999999999998888776543
No 60
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.63 E-value=6.3e-14 Score=137.87 Aligned_cols=204 Identities=16% Similarity=0.075 Sum_probs=169.4
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
+++-++..+|.++...|+.+.+...+.++.+..|.+ .+.....+.++...|++++|+..++++++.+|.+..++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~- 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL- 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-
Confidence 566778888888888899999999999998887755 4667788999999999999999999999999999987775
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Q 013800 273 AKLVWELHR---DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRA 349 (436)
Q Consensus 273 a~~~~~~~~---d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 349 (436)
+..++..+. ....+...+.......|.....+..++ .++..+|++++|+..++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a----------------------~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA----------------------FGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHH
Confidence 545444432 234444444443345566677777788 8888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
++++|+++.++..+|.+++..|+ +++|+.++++++...|.++ ..+..++.++...|++++|+..|++++...|
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGR-FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999 9999999999999887433 3567899999999999999999999987665
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=8.3e-14 Score=140.51 Aligned_cols=211 Identities=18% Similarity=0.195 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
..+++..++++++.+|.|+.+.+.++.-|...++.+.|.++.++++++++. ++.+|..+|.++...++ +.+|+...+.
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr-~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR-LKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-hHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999654 78999999999888875 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH----------------------------------------------
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE---------------------------------------------- 326 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---------------------------------------------- 326 (436)
++.-.|+|.........+....++.+++..++..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 9988887655544444444445555544444331
Q ss_pred ---------------------------------------------------------HHHH------------hHHHHcC
Q 013800 327 ---------------------------------------------------------HIQV------------LPIQSKG 337 (436)
Q Consensus 327 ---------------------------------------------------------~~~~------------~~~~~~g 337 (436)
+.+. .++..+|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 1111 5666778
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC--YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
++.+|.+.|..|+.++|+++.....+|.++.+.|+ ..-|.. ++..+++++|.++++|+.+|.++..+|+.++|.++|
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999999999999999999999999999999998 777777 999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCh
Q 013800 416 DQFQQVAPIRQ 426 (436)
Q Consensus 416 ~~al~l~p~~~ 426 (436)
..++++.+..+
T Consensus 778 ~aa~qLe~S~P 788 (799)
T KOG4162|consen 778 QAALQLEESNP 788 (799)
T ss_pred HHHHhhccCCC
Confidence 99999975543
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.1e-13 Score=127.02 Aligned_cols=227 Identities=15% Similarity=0.098 Sum_probs=151.6
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRA 251 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A 251 (436)
.+|+.|...|.--+..++ ....+...+|+++...|+.+.|+.+-+..++ .|+.. .++..+|.-|+..|-++.|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467777777666666666 5667777788888888888888876655443 34332 4667777778888888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
+..|...+....--..++..+..+|.... +|++|+..-++.+++.++..... ++.+++++. .
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~e--IAqfyCELA---------------q 188 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRVE--IAQFYCELA---------------Q 188 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchhH--HHHHHHHHH---------------H
Confidence 88887776655556667777777766654 58888888888777777643322 222222221 4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDED 410 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~ 410 (436)
.+....+.++|+..+++|++.+|+...+-..+|.+....|+ |+.|++.++.+++.+|+. +++.-.|..+|.++|+.++
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD-YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc-hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 44455666777777777777777777777777777777777 777777777777777665 3566666677777777777
Q ss_pred HHHHHHHHHhhCCC
Q 013800 411 DSKSSDQFQQVAPI 424 (436)
Q Consensus 411 A~~~~~~al~l~p~ 424 (436)
.+..+.++.+..+.
T Consensus 268 ~~~fL~~~~~~~~g 281 (389)
T COG2956 268 GLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHHccCC
Confidence 77777666665544
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=3.7e-15 Score=136.66 Aligned_cols=220 Identities=15% Similarity=0.101 Sum_probs=184.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
.|.+++-.++..+.-.+ ..+.+..+..+|.+..+...|+..|.+.++..|.+...+...|.++..++++++|.++|+.
T Consensus 238 m~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred ChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 44566666666555443 4577888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++++|.+.++...+|.-|+..++ .+-|+.+|++.+++.-.+++.+.++|.|....++++-++..+++++..
T Consensus 316 vlk~~~~nvEaiAcia~~yfY~~~-PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYFYDNN-PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred HHhcCCccceeeeeeeeccccCCC-hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 888888888888888877777764 888888888888888888888888888888888888888877776655
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 --------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.+....|++.-|..+|+-++..++++.+++++||.+-.+.|+ .++|..++..|-...|+-.+..++++.+
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD-ILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-hHHHHHHHHHhhhhCccccccccceeEE
Confidence 444567899999999999999999999999999999999999 9999999999999999988887777644
No 64
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.5e-13 Score=133.87 Aligned_cols=109 Identities=12% Similarity=0.097 Sum_probs=103.4
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...|+..+..|+|+.|+.+|..+|.++|.+...|.+...+|..+|+|++|+..-.+.++++|.=+..|..+|..+..+++
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
|++|+..|.+.|+.+|++......++.+.
T Consensus 86 -~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 -YEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred -HHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999998888776
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=4.9e-14 Score=126.59 Aligned_cols=124 Identities=12% Similarity=0.149 Sum_probs=96.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013800 245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
.++.++++..++++++.+|++...|..+|.++...++ +++|+..|+++++++|+++.++..+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~-~~~A~~a~~~Al~l~P~~~~~~~~lA---------------- 114 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND-YDNALLAYRQALQLRGENAELYAALA---------------- 114 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------
Confidence 5667778888888888888888888888877777764 88888888888888888888888887
Q ss_pred HHHHHHhH-HHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 325 EEHIQVLP-IQSKGD--LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 325 ~~~~~~~~-~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.+ +...|+ +++|...++++++.+|+++.++.++|.+++..|+ +++|+.+|++++++.|.+.
T Consensus 115 ------~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~-~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 115 ------TVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD-YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred ------HHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCc
Confidence 43 345555 4788888888888888888888888888888888 8888888888888776654
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-13 Score=130.53 Aligned_cols=215 Identities=16% Similarity=0.186 Sum_probs=174.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK----------------- 274 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~----------------- 274 (436)
.-+..+..++-.-...-|++...+..+|.+++..|++.+|+..|+++.-++|......-.+|.
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 334455556666677889999999999999999999999999999999999987544433333
Q ss_pred -----------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 275 -----------------LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 275 -----------------~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
++|..+ ++..|+.+-+|+|+.+|.+..++...|.++...++.++|.-.++.+...
T Consensus 292 Lf~~~~~ta~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 292 LFAKVKYTASHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred HHhhhhcchhhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 334443 3788888889999999999999999999999999998888888765543
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA-KLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.+|...|++.+|......+++.-|.++.++..+| .++...-.--++|.+++++++.+.|....+...+|.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence 7788889999999988889988888888888886 4544332214899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCChh
Q 013800 405 TEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 405 ~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.|.+++++..+++.+...|+-..
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~L 473 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNL 473 (564)
T ss_pred hCccchHHHHHHHHHhhccccHH
Confidence 99999999999999998877543
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.60 E-value=2.7e-13 Score=144.60 Aligned_cols=197 Identities=14% Similarity=0.099 Sum_probs=169.3
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+......+.+..+.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|........+|.+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 56667777888889999999999999999999999965545889999999999999999999994344455555556878
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ +++|++.|+++++.+|+++.++..++ .++...++.++|++.+++++..+|.
T Consensus 112 y~~~gd-yd~Aiely~kaL~~dP~n~~~l~gLa----------------------~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 112 YRNEKR-WDQALALWQSSLKKDPTNPDLISGMI----------------------MTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHH----------------------HHHhhcCCHHHHHHHHHHhcccCcc
Confidence 888774 99999999999999999999998888 8888899999999999999999998
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
+... ..++.++...++ ..+|+..++++++.+|++..++..+..++...|-...|.+..++
T Consensus 169 ~~~~-l~layL~~~~~~-~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 169 VQNY-MTLSYLNRATDR-NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred hHHH-HHHHHHHHhcch-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 5554 556666666677 76799999999999999999999999999999999988766554
No 68
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.60 E-value=1.1e-13 Score=124.24 Aligned_cols=122 Identities=12% Similarity=0.131 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+.++++..++++++.+|++...|..+| .++...|++++|+..|+++++++|+++.++.
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg----------------------~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~ 111 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLG----------------------EYYLWRNDYDNALLAYRQALQLRGENAELYA 111 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 467777777777777777777777777 7777777777777777777777777777777
Q ss_pred HHHHHH-HHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 362 QYAKLV-WELHHD-HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 362 ~la~~~-~~~g~d-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.+|.++ ...|+. +++|+..++++++.+|++..++..+|..+.+.|++++|+.++++++++.|..
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 777765 444441 3777777777777777777777777777777777777777777777776553
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.59 E-value=1.3e-13 Score=144.56 Aligned_cols=158 Identities=14% Similarity=0.048 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
.+++.-+.......|++++++++||.+....|++++|+.++++++++.|++..++..++.++.+.++ +++|+..+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l 147 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYF 147 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHh
Confidence 4555555666677899999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~ 374 (436)
..+|++..+++.+| .++.+.|++++|+.+|++++..+|+++.++..+|.++...|+ .
T Consensus 148 ~~~p~~~~~~~~~a----------------------~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~ 204 (694)
T PRK15179 148 SGGSSSAREILLEA----------------------KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-L 204 (694)
T ss_pred hcCCCCHHHHHHHH----------------------HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-H
Confidence 99999999999999 888899999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 013800 375 DKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 375 ~~A~~~~~~al~~~p~~~~~~~ 396 (436)
++|...|+++++....-...+.
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 205 WRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999998766555443
No 70
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=8.7e-13 Score=130.76 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=208.8
Q ss_pred HHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 262 (436)
..+--.|+++...+.-..|+.-+..+.+.+-++-|+..|..+++.+|....+|...+.+-..-|..+.-..++++++...
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 34444555555544447899999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------h
Q 013800 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------L 331 (436)
Q Consensus 263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------~ 331 (436)
|.....|..++.-++..| |...|...+.++++.+|++.++|+.-..+......+++|+.++.++... .
T Consensus 581 pkae~lwlM~ake~w~ag-dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAG-DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSAN 659 (913)
T ss_pred CcchhHHHHHHHHHHhcC-CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhH
Confidence 999999999999888886 6999999999999999999999999888888989999999988866554 5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 411 (436)
+...+++.++|+.+++++++..|+....|..+|+++-++++ .+.|.+.|...+..-|.....|..++.+-...|..-.|
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~-ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN-IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH-HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 55567888999999999999999999999999999998888 88888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhCCCChh
Q 013800 412 SKSSDQFQQVAPIRQG 427 (436)
Q Consensus 412 ~~~~~~al~l~p~~~~ 427 (436)
...+.++.-.+|....
T Consensus 739 R~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 739 RSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHHHhcCCCcch
Confidence 8888888888877544
No 71
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.59 E-value=2e-13 Score=122.68 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
+...+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+..++..+|...+..++ |.+|+..+++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~-~~~A~~~~rk 125 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN-FGEAVSVLRK 125 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc-hHHHHHHHHH
Confidence 3345777777788889999999 9999999999999999999999999999999999889999888875 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
+..+.|++..+|..+| .+|.+.|++++|...|.+++++.|.++.+.+|+|..+.-.|+
T Consensus 126 A~~l~p~d~~~~~~lg----------------------aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 126 AARLAPTDWEAWNLLG----------------------AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HhccCCCChhhhhHHH----------------------HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 9999999999999999 889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 373 DHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 373 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
++.|..++..+...-+.+..+..+++.+...+|++++|.+...+-+
T Consensus 184 -~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 184 -LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred -HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999999888899999999999999999999977655433
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.58 E-value=2.8e-13 Score=135.82 Aligned_cols=198 Identities=18% Similarity=0.181 Sum_probs=169.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-- 297 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-- 297 (436)
.|.-..+...++..|..+|++++|+..+++++.. .|.-......+|.+|..+++ +.+|+..|++|+.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k-~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK-YDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHH
Confidence 4655677888999999999999999999999998 55555666679999999986 999999999999873
Q ss_pred ------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------------hHHHHcCCHHHHHHHHHHHHH
Q 013800 298 ------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 298 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.-+.++.+|+.++...|++++|..+++.++.. .++..++++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445677899999999999999999999987766 778889999999999999998
Q ss_pred hC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 352 AN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--------PADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 352 ~~--------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
+. +.-+..+.+||.+|..+|+ +.+|.++|++|+++. +.....++++|..+.+.+++.+|.+.|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 72 2346789999999999999 999999999999864 333578899999999999999999999
Q ss_pred HHHHhhC----CCChh
Q 013800 416 DQFQQVA----PIRQG 427 (436)
Q Consensus 416 ~~al~l~----p~~~~ 427 (436)
.++..+. |.+++
T Consensus 433 ~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHhCCCCCc
Confidence 9988764 55544
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4.4e-12 Score=116.65 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=190.1
Q ss_pred cCCCChHHHHHhhcCCCCCCCh----------------------hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFD----------------------DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL 234 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~----------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 234 (436)
.+|..-++++..|.-++.++.. -+...+|.-|+..|-++.|+..|...++...--..+
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 4777788888888877766432 456678889999999999999999998876666689
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
+..+..+|....+|++|++..++..++.+.. +..+-.+|..+.... +.+.|...+++|++.+|+...+-..+|
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-~~d~A~~~l~kAlqa~~~cvRAsi~lG- 221 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-DVDRARELLKKALQADKKCVRASIILG- 221 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhCccceehhhhhh-
Confidence 9999999999999999999999999998875 445666776665555 599999999999999999999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
.++...|+|++|++.++.+++.+|+. +++...|..+|.++|+ .++.+..+.++.+..
T Consensus 222 ---------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-~~~~~~fL~~~~~~~ 279 (389)
T COG2956 222 ---------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK-PAEGLNFLRRAMETN 279 (389)
T ss_pred ---------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcc
Confidence 88888999999999999999999876 5788888899999999 999999999999888
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 429 (436)
+. ..+...++.......-.+.|..++.+-+...|...+..
T Consensus 280 ~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 280 TG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred CC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 77 45666677776677677788888888888888765543
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4e-14 Score=133.69 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=194.0
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...|+.+++..+|.+|+..|..+|+..|+++..|.+.+.++...+++++|...+++.++++|.........+.++..++.
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 34455677779999999999999999999999999999999999999999999999999999999988888888877763
Q ss_pred CHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------h
Q 013800 282 DQHRALTYFERAA------------LAA------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------L 331 (436)
Q Consensus 282 d~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~ 331 (436)
..+|...|+..- .+- |....+...-+.|+...+++++|...--..++. .
T Consensus 133 -~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 -LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred -HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 666665544211 111 222344566788999999999998877765554 6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDG------------EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVL 395 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~~~ 395 (436)
+++..++.+.|+..|+++|.++|+.. +.|...|.-.++.|+ +.+|.+.|..+|.++|++. ..|
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccccchhHHHH
Confidence 77778999999999999999999763 467778888899999 9999999999999999865 678
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
.+++.+..++|+.++|+...+.++.++|.+..+.. +|+.|
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877 55544
No 75
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.55 E-value=7.5e-13 Score=138.87 Aligned_cols=149 Identities=13% Similarity=0.016 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013800 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
++.-+.......|.++.+++++|.+....+. +++|+..++.++++.|++..++..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~-~~ea~~~l~~~~~~~Pd~~~a~~~~a---------------------- 127 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHR-SDEGLAVWRGIHQRFPDSSEAFILML---------------------- 127 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCcHHHHHHHH----------------------
Confidence 3333334445688999999999999999986 99999999999999999999999999
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
.++.+.+++++|+..+++++..+|+++..++.+|.++.++|+ +++|+.+|++++..+|+++.++..+|.++...|+.++
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 888999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 013800 411 DSKSSDQFQQVAP 423 (436)
Q Consensus 411 A~~~~~~al~l~p 423 (436)
|...|+++++...
T Consensus 207 A~~~~~~a~~~~~ 219 (694)
T PRK15179 207 ARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998853
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=2.1e-12 Score=132.59 Aligned_cols=237 Identities=18% Similarity=0.202 Sum_probs=192.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+..+|...+...+..++ .+..+|..+|.++.++|+.+++...+-.|-.++|.+.+.|..++....++|++.+|+-+|.+
T Consensus 154 ~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 45567777778888888 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCchHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-----SNILAAYACFLWEMEDDGEDDKAQE------- 325 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~------- 325 (436)
||+.+|.+....+..+.+|.+.| ++..|...|.+++.+.|.. .......+..+...++.+.|.+.++
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 99999999999999999988887 4999999999999999831 1112233444444444444444443
Q ss_pred --------------------------------------------------------------------------------
Q 013800 326 -------------------------------------------------------------------------------- 325 (436)
Q Consensus 326 -------------------------------------------------------------------------------- 325 (436)
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence
Q ss_pred ------------------------------HHHHH------------------------------hHHHHcCCHHHHHHH
Q 013800 326 ------------------------------EHIQV------------------------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 326 ------------------------------~~~~~------------------------------~~~~~~g~~~~A~~~ 345 (436)
+++.. .+|..+|.+++|+++
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 11111 899999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCChHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---------SHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~ 416 (436)
|++++...|++.++...|+.++.++|+ .++|.+.+.....-++.+ ..+...+..++.+.|+.++=+....
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999 999999998866333221 2566778889999999988554433
Q ss_pred H
Q 013800 417 Q 417 (436)
Q Consensus 417 ~ 417 (436)
.
T Consensus 551 ~ 551 (895)
T KOG2076|consen 551 T 551 (895)
T ss_pred H
Confidence 3
No 77
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.54 E-value=5.9e-13 Score=140.72 Aligned_cols=220 Identities=13% Similarity=0.070 Sum_probs=186.2
Q ss_pred CCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----
Q 013800 191 GISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---- 266 (436)
Q Consensus 191 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---- 266 (436)
.+++ .+..+|..+...+...+++++|+..++.+++.+|+...+|+.+|.++.+.+++.+|... +++...+.+.
T Consensus 25 ~~~p-~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSL-SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4455 67788999999999999999999999999999999999999999999999988877666 6666655554
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 267 ---------------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 267 ---------------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
.+++.+|.||-.+++ +++|...|+++++++|+++.++.++|..+... +.++|...+.+++ .
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~-~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV--~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNE-NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI--Y 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH--H
Confidence 899999999999986 99999999999999999999999999999999 9999999999999 5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--------HH------------HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQ--------YA------------KLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------la------------~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.+...+++.++.+++.+.+..+|++.+.+.. ++ ..|...++ |++++..++.+|+.+|.+
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~-~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED-WDEVIYILKKILEHDNKN 256 (906)
T ss_pred HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh-hhHHHHHHHHHHhcCCcc
Confidence 6777889999999999999999997665321 12 34455555 999999999999999999
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
..+...++.+|. +.|.. ...++..+.+
T Consensus 257 ~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 257 NKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred hhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 999999999987 33333 4444444444
No 78
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=1.1e-12 Score=124.95 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=179.7
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+.+..+|..++.-+. ....+++++|..+..+|+.++|+.+|-+.-.+--+++++++.++.+|..+.+..+|++++.+
T Consensus 505 d~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 34456677888877776 56789999999999999999999999998888788999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+..+-|.++.++..+|.+|-..| |-.+|.+|+-...+..|-+.+..-.|+..|....-.++++.+++++-..
T Consensus 584 ~~slip~dp~ilskl~dlydqeg-dksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEG-DKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhccc-chhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 99999999999999998877665 6999999999999999999999999999999999999999999865433
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
.++.+.|+|++|...|+..-+..|.+.+.+..|.++...+|- .+|.++-++.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl--~d~key~~kl 719 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL--KDAKEYADKL 719 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc--hhHHHHHHHH
Confidence 788999999999999999999999999999999999888875 5555554443
No 79
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.52 E-value=1.2e-12 Score=126.82 Aligned_cols=160 Identities=15% Similarity=0.017 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|....+++..|..++..|++++|+..++..+...|+|+..+...+.++...++ ..+|++.+++++.++|+....+.++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK-AKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999986 99999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
..+.+.|++++|+..+++.+..+|+++..|..||.+|..+|+ ..+|..
T Consensus 382 ----------------------~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~-~~~a~~--------- 429 (484)
T COG4783 382 ----------------------QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN-RAEALL--------- 429 (484)
T ss_pred ----------------------HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc-hHHHHH---------
Confidence 888889999999999999999999999999999999999998 555544
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCChhHH
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA-PIRQGAV 429 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~ 429 (436)
..+..++..|++++|+..+.++.+.. .+|..++
T Consensus 430 --------A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a 463 (484)
T COG4783 430 --------ARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWA 463 (484)
T ss_pred --------HHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence 44555666677777777777766553 5555443
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=6.4e-13 Score=111.84 Aligned_cols=117 Identities=19% Similarity=0.144 Sum_probs=81.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
+.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.+|..+|.++...++ +++|+.+|+++++.+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 356677777777777777777777777777777777777777777777777777777666654 7777777777777777
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
+++..++.+| .++...|++++|+..|+++++.+|++..
T Consensus 83 ~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAA----------------------ECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CChHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 7777777777 6666666777777777777777666544
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=1.1e-12 Score=110.31 Aligned_cols=118 Identities=19% Similarity=0.139 Sum_probs=90.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
+.|++++..+|++..+.+.+|.++...++ +++|+..|++++..+|.++.++..+| .+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~la----------------------~~ 60 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAYDPYNSRYWLGLA----------------------AC 60 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HH
Confidence 45677777777777777777777777764 77787777777777777777777777 66
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~ 394 (436)
+...|++++|+.+|+++++.+|.++..++.+|.++...|+ +++|+..|+++++++|++...
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE-PESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchH
Confidence 7777777777777777777777777777777777777777 777877777777777776553
No 82
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=9.7e-12 Score=110.89 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=158.8
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
...++.+..|+.+.|..++++.....|....+....|..+...|++++|+++|+..++-+|.+..++...-.+...+|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK- 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK- 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC-
Confidence 3445667789999999999999999999999999999999999999999999999999999999998877767777776
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
.-+|++.+...++..+.|.++|..++ .+|...|+|++|.-+|++.+-+.|.++-.+..
T Consensus 136 ~l~aIk~ln~YL~~F~~D~EAW~eLa----------------------eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r 193 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMNDQEAWHELA----------------------EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR 193 (289)
T ss_pred cHHHHHHHHHHHHHhcCcHHHHHHHH----------------------HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 77999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 363 YAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 363 la~~~~~~g~--d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+|.+++-+|. ++.-|.++|.++++++|.+..+++.+-.+
T Consensus 194 lae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 194 LAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 9999988875 26789999999999999877777665444
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.47 E-value=3.6e-13 Score=138.78 Aligned_cols=246 Identities=15% Similarity=0.090 Sum_probs=203.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHH-----------------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL----------------------- 234 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~----------------------- 234 (436)
+...+...+-+++.+++ ..+.+|..+|.+|....+...|..+|++|.++++.++.+
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34466778888999999 799999999999999889999999999999999876544
Q ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 235 -------------LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 235 -------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~ 301 (436)
|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|+ |.-|++.|.++..++|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhH
Confidence 44455566666777788888999999999999999999999999987 9999999999999999999
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------------------------------------
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------------------------------------- 330 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------------------------------------- 330 (436)
...+..+......|.+.++...+...++.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999888733322
Q ss_pred ----------------------------------------------------------------------------hHHH
Q 013800 331 ----------------------------------------------------------------------------LPIQ 334 (436)
Q Consensus 331 ----------------------------------------------------------------------------~~~~ 334 (436)
+...
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHH
Confidence 1111
Q ss_pred H----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 335 S----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 335 ~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
. +.+...|+.++++++++..++...|+.||.+ -..|+ +.-|..+|-+.+...|.+.-.|.++|.+..+..+++.
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gn-va~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGN-VACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccch-hhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 1 1233478888888888888888888888877 55577 8888888888888888888888888888888889999
Q ss_pred HHHHHHHHHhhCCCChh
Q 013800 411 DSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~ 427 (436)
|...+.++..++|..-.
T Consensus 869 A~~af~~~qSLdP~nl~ 885 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLV 885 (1238)
T ss_pred hhHHHHhhhhcCchhhH
Confidence 99999998888887544
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.46 E-value=5.3e-12 Score=113.53 Aligned_cols=173 Identities=18% Similarity=0.157 Sum_probs=155.3
Q ss_pred HHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 186 LAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
+-......+ ++... .++...+...|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..+.++..+.|.+
T Consensus 56 l~~~~~~~p-~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d 133 (257)
T COG5010 56 LGAAVLRNP-EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD 133 (257)
T ss_pred HHHHHhcCc-chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence 333344444 44455 6666777777999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
.++|..+|.+|.+.|+ +++|...|.+++++.|+++.+..++| ..+.-.|+++.|..+
T Consensus 134 ~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L~~~~p~~~nNlg----------------------ms~~L~gd~~~A~~l 190 (257)
T COG5010 134 WEAWNLLGAALDQLGR-FDEARRAYRQALELAPNEPSIANNLG----------------------MSLLLRGDLEDAETL 190 (257)
T ss_pred hhhhhHHHHHHHHccC-hhHHHHHHHHHHHhccCCchhhhhHH----------------------HHHHHcCCHHHHHHH
Confidence 9999999999999985 99999999999999999999999999 888889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
+..+....+.+..+..+++.+...+|+ +++|.....+-
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~-~~~A~~i~~~e 228 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGD-FREAEDIAVQE 228 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCC-hHHHHhhcccc
Confidence 999999999999999999999999999 99998877653
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=2.3e-11 Score=121.03 Aligned_cols=230 Identities=12% Similarity=0.048 Sum_probs=174.7
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+...-..|..+..+|+-++|..+.+.++..++...-+|..+|.++....+|++|+.+|+.|+.+.|+|..+|..++.+
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL 118 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34455555666666678888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------------hHHHH
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------LPIQS 335 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~ 335 (436)
...++ +++.....-.+.+++.|.....|..++..+...|++..|..+++++.+. .+..+
T Consensus 119 Q~QmR-d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 119 QIQMR-DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHH-hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 77775 5888888888888888888888888888888888888888888766654 55666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KS 414 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~ 414 (436)
.|.+++|.+.+..--..--+........|.++.++++ +++|...|...+..+|++...+..+-.++....+--+++ ..
T Consensus 198 ~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~-lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ-LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred cccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh-HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7777777766655433333444556667788888888 899999999999999988888877777775333334444 56
Q ss_pred HHHHHhhCCCChh
Q 013800 415 SDQFQQVAPIRQG 427 (436)
Q Consensus 415 ~~~al~l~p~~~~ 427 (436)
|...-+..|.+..
T Consensus 277 y~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 277 YAILSEKYPRHEC 289 (700)
T ss_pred HHHHhhcCccccc
Confidence 6666666555443
No 86
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=1.6e-10 Score=109.44 Aligned_cols=240 Identities=17% Similarity=0.103 Sum_probs=170.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
+...++-...+.-...+ .-.-++..-+....++|+++.|-.++.++-+..++ ...+...++.++...|+++.|..-..
T Consensus 99 ~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 99 DFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred cHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 44455555555444443 23344555555666677777777777777776443 33566667777777777777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------------------------------------- 297 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------------------------------------- 297 (436)
++++..|.++.++.....+|...|. |.+...++.+.-+..
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~-~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGA-WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhcc-HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 7777777777777777777777764 777776665543321
Q ss_pred ---CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 298 ---PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 298 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
.+++.....++.-+..+|+.++|.+++.+.+++ .-....++...=++..++.++..|+++..+..||.
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~ 336 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGR 336 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 113444456666666777777777777766666 22334566777777777777888999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 366 ~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.+++.+. |.+|..+|+.++...|+ ...+..+|.++.++|+..+|.++++.++.+
T Consensus 337 L~~k~~~-w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 337 LALKNKL-WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhhH-HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999 99999999999999987 677899999999999999999999998855
No 87
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.4e-12 Score=117.84 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=53.7
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
....-|+-+++.++|++|+..|.+||+++|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..||.+|+.+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555444444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 280 HRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++ +.+|++.|+++|+++|++...+.+|.
T Consensus 163 gk-~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 163 GK-YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred Cc-HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 43 55555555555555555444444444
No 88
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.43 E-value=1.6e-10 Score=126.82 Aligned_cols=218 Identities=14% Similarity=0.028 Sum_probs=133.7
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 271 (436)
...|..+-..+.+.|++++|+.+|+++.+. .| +...|..+...|.+.|++++|.+.|.+.... .| +...|..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence 345666666666667777777777666553 23 4556666666666777777777777666542 22 3455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcC
Q 013800 272 YAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKG 337 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g 337 (436)
+...|.+.++ +++|.+.|+++.+.+ +.+...|..+...+.+.|+.++|..++.+..+. ..+.+.|
T Consensus 585 LI~ay~k~G~-ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQ-VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 6656666553 777777777766665 345566666666777777777777766655543 4555566
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013800 338 DLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
++++|.++++++.+.. +-+..+|..+..+|.+.|+ +++|++.|++.... .|+ ...|..+...|.+.|+.++|+++
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666666543 2235566666666666666 66666666665442 232 45566666666666666666666
Q ss_pred HHHHHh
Q 013800 415 SDQFQQ 420 (436)
Q Consensus 415 ~~~al~ 420 (436)
|++...
T Consensus 742 f~eM~~ 747 (1060)
T PLN03218 742 LSEMKR 747 (1060)
T ss_pred HHHHHH
Confidence 665543
No 89
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.42 E-value=2.3e-10 Score=125.64 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=163.5
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKL 275 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 275 (436)
...|..+-..+.+.|++++|.++|+++.+... .+...|..+...|.+.|++++|++.|.+.....- -+...|..+...
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35666666777778888888888888776542 2567777788888888888888888887766532 246677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCC
Q 013800 276 VWELHRDQHRALTYFERAALA----APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGD 338 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~ 338 (436)
+...+. +++|.+.|++.... .| +...+..+...+.+.|++++|.++++...+. ..|.+.|+
T Consensus 552 ~~k~G~-~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 552 CGQSGA-VDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHCCC-HHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 777764 88888888887653 23 3566777777888888888888888766654 56777888
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 339 LEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 339 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
+++|+..|.+..+. .|+ ..+|..+...+.+.|+ +++|.++++++.+.. +-+...+..+...|.+.|+.++|.++|
T Consensus 630 ~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888887765 344 6678888888888888 888888888887754 234677888888888888888888888
Q ss_pred HHHHhh
Q 013800 416 DQFQQV 421 (436)
Q Consensus 416 ~~al~l 421 (436)
++....
T Consensus 708 ~eM~~~ 713 (1060)
T PLN03218 708 EDIKSI 713 (1060)
T ss_pred HHHHHc
Confidence 887653
No 90
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=6e-11 Score=105.92 Aligned_cols=189 Identities=16% Similarity=0.076 Sum_probs=163.6
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 013800 212 DDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHR 285 (436)
Q Consensus 212 g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~ 285 (436)
.+.++-++++...+.. .|+.-.++-....+....|+.+-|..++++.-...|+...+....|..+...+. +++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~-~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN-YKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc-hhh
Confidence 3445556666555543 333345566677777889999999999999999899999999999988877775 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 286 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
|+++|+..++-+|.+...+.... .+...+|+.-+|++.+...++..+.|.++|..++.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKl----------------------Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKL----------------------AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHH----------------------HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999999999988887666 66777899999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCCC
Q 013800 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE---DEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 366 ~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~p~ 424 (436)
+|...|+ |++|.-+|++.+-+.|.++..+..+|.+++-+|. .+-|.++|.+++.++|.
T Consensus 163 iY~~~~~-f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 163 IYLSEGD-FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHhHhH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 9999999 9999999999999999999999999999888874 56699999999999994
No 91
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2.1e-12 Score=118.25 Aligned_cols=93 Identities=22% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+..-|.-+.+.++|++|+..|.+||+++|.++..|.++|.+|.+++. ++.|++.++.+|.++|....+|..||.++..+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~-~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE-YEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc-hHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34445555555555555555555555555555555555555555553 55555555555555555555555555555555
Q ss_pred cCchHHHHHHHHHH
Q 013800 315 EDDGEDDKAQEEHI 328 (436)
Q Consensus 315 g~~~~A~~~~~~~~ 328 (436)
|++.+|++.|++++
T Consensus 163 gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 163 GKYEEAIEAYKKAL 176 (304)
T ss_pred CcHHHHHHHHHhhh
Confidence 55555555555444
No 92
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.41 E-value=3e-11 Score=129.56 Aligned_cols=231 Identities=15% Similarity=0.025 Sum_probs=154.6
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD-PGDGESWMQYA 273 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 273 (436)
+..+|..+...+.+.|++++|+.+|+++.+. .| +...+..+..++.+.|++++|.+.+..+++.. +.+..++..+.
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 3456777777777777777777777777653 23 44566667777777777777777777777665 44556666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCCHH
Q 013800 274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGDLE 340 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~~~ 340 (436)
..|.+.|. +++|.+.|++..+ .+...|..+...+...|+.++|.+++++.... ..+.+.|+++
T Consensus 368 ~~y~k~G~-~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 368 DLYSKWGR-MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHCCC-HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 77776654 7777777776543 35567777777788888888888888776654 4566677777
Q ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 341 GAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 341 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
+|.++|+...+..+ -+...|..+..++.+.|+ +++|.+.+++. ...|+ ..+|..+...+...|+.+.|...+++.
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-LDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 77777777765322 124566677777777777 77777776653 22333 456777777777777777777777777
Q ss_pred HhhCCCChhHHh-hhhhc
Q 013800 419 QQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 419 l~l~p~~~~a~~-~an~y 435 (436)
+.+.|.....+. +.|+|
T Consensus 521 ~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 521 YGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred hCCCCCCCcchHHHHHHH
Confidence 777776544333 44444
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=3e-11 Score=120.20 Aligned_cols=222 Identities=14% Similarity=0.097 Sum_probs=185.0
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
..-.+..++|...++..+..++..|++.+.+...|..+..+|+-++|......++..++.....|.-+|.++.... +|+
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-~Y~ 92 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-KYD 92 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-hHH
Confidence 3344566999999999999999999999999999999999999999999999999999999999999998877776 599
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHh
Q 013800 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+|++||+.|+.+.|+|..+|.-++.+...+++++.......+.++. ..+...|++..|....+.-...
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998888777766655 6677789999999888877665
Q ss_pred C---CC-----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 353 N---PG-----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 353 ~---p~-----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
. |. ..+.......++...|. +++|++.+..--..--+........+.++..+++.++|+..|...+..+|+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 4 32 23455566667777788 788877766543333333345567789999999999999999999999998
Q ss_pred ChhH
Q 013800 425 RQGA 428 (436)
Q Consensus 425 ~~~a 428 (436)
...-
T Consensus 252 n~~Y 255 (700)
T KOG1156|consen 252 NLDY 255 (700)
T ss_pred hHHH
Confidence 6553
No 94
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.39 E-value=4.2e-11 Score=128.38 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=197.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
++++|..+|..-....-.-+..+|..+...+.+.|++++|.+++..+++.. +.+..++..+...|.+.|++++|...|+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 334454444433222211244678888889999999999999999999976 5577888999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 330 (436)
+..+ .+...|..+...|...|. .++|++.|++.++.... +...+..+...+...|..++|.++++...+.
T Consensus 385 ~m~~---~d~~t~n~lI~~y~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 385 RMPR---KNLISWNALIAGYGNHGR-GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred hCCC---CCeeeHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 8754 466789999999888875 99999999999876432 5666888888999999999999999987753
Q ss_pred ---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 ---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.++.+.|++++|.+.+++. ...| +..+|..+..++...|+ ++.|...+++.+++.|++...|..++.+
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~-~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKN-LELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCC-cHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 7888999999999998764 2334 47789999999999999 9999999999999999998899999999
Q ss_pred HHHCCChHHHHHHHHHHHhh
Q 013800 402 LWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~l 421 (436)
|...|++++|.+++++..+.
T Consensus 538 y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999988765
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.39 E-value=2.9e-11 Score=118.91 Aligned_cols=176 Identities=19% Similarity=0.061 Sum_probs=147.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
+|+.+.++..+|.++...|++++|...+.++....|.+ .+.....+.+++..+ ++++|...++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHH
Confidence 79999999999999999999999999999999887754 556677787777776 59999999999999999999777
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
.. +..+...+ ...+....+...+......+|....++..+|.++...|+ +++|+..++++
T Consensus 81 ~~-~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~a 140 (355)
T cd05804 81 KL-HLGAFGLG------------------DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ-YDRAEEAARRA 140 (355)
T ss_pred HH-hHHHHHhc------------------ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 65 42222222 123444555555555445677888888899999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 385 VQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++++|++..++..++.++...|++++|+..+.+++...|.
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 9999999999999999999999999999999999998764
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=4.1e-12 Score=127.80 Aligned_cols=197 Identities=15% Similarity=0.130 Sum_probs=161.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|-..-.+|...|+..+|..+..+-++ .|.++..|..+|.+....--|++|.++.+.. +..+.+.+|...+.
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~ 497 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhcccccc
Confidence 4555556677777777777777777777 5556667777776666655555555555433 23355555555455
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.+ +|.++.++++..++++|-....|+.+| .+..+.++++.|.++|.+++.++|++.+
T Consensus 498 ~~-~fs~~~~hle~sl~~nplq~~~wf~~G----------------------~~ALqlek~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 498 NK-DFSEADKHLERSLEINPLQLGTWFGLG----------------------CAALQLEKEQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred ch-hHHHHHHHHHHHhhcCccchhHHHhcc----------------------HHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence 44 599999999999999999999999999 8888899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
+|++++.+|...++ -.+|...+++|++.+-++..+|-|+..+..+.|.+++|++.|.+.+.++-++.
T Consensus 555 aWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999 99999999999999988899999999999999999999999999998865544
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.38 E-value=6.2e-11 Score=114.99 Aligned_cols=153 Identities=19% Similarity=0.098 Sum_probs=140.6
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
...++++.+..++..|++++|+..++..+...|+|+..+...+.++...++..+|++.+++++.++|..+..++++|.+|
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
...++ +.+|+..++..+..+|+++..|..|+..+..+|+..++..... ..+...|++++|+..+.++.+...-
T Consensus 385 l~~g~-~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----E~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 385 LKGGK-PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----EGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HhcCC-hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----HHHHhCCCHHHHHHHHHHHHHhccC
Confidence 99986 9999999999999999999999999999999998888887776 5566788888888888888877643
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.37 E-value=4.5e-11 Score=123.62 Aligned_cols=219 Identities=16% Similarity=0.001 Sum_probs=182.1
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHH-----HHcCCHHHHHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYP--------------------CHPLLLRNYAQLL-----QKKGDLYRAEDYY 255 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P--------------------~~~~~~~~la~~~-----~~~g~~~~A~~~~ 255 (436)
.++.|.+......|.+|...+.....+.- +-....+..+..+ ...++...|...|
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~al 481 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHAL 481 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55666666666777777666665555441 1111111112111 1234578899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013800 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 330 (436)
-+++.+++..+.+|..+|.+|.... |...|.++|++|.++|+.+..++...+..+....+.+.|....-..-++
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 9999999999999999999999887 6999999999999999999999999999999999999998886533333
Q ss_pred ---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 ---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
..|...+++.+|+..|+.+++.+|.+...|..+|.+|...|+ +..|++.|.+|..++|.+..+.+..+..
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 667788999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHHhh
Q 013800 402 LWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~l 421 (436)
...+|+|.+|+..+...+..
T Consensus 640 ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999887764
No 99
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.36 E-value=1.4e-11 Score=103.83 Aligned_cols=118 Identities=15% Similarity=0.067 Sum_probs=105.2
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 292 RAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 292 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
-+..+. ++.-+..+.+| ..++..|++++|+..|+-+..++|.+...|++||.++..+
T Consensus 25 ~l~~~~~~~~l~~lY~~A----------------------~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~ 82 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYA----------------------MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ 82 (157)
T ss_pred HHHCCChHHHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344556 66777888888 8888999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCChhHHhhh
Q 013800 371 HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA---PIRQGAVTTA 432 (436)
Q Consensus 371 g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~---p~~~~a~~~a 432 (436)
|+ +.+|+..|.+++.++|+++..++++|.+++..|+.+.|.+.|+.++..- |.+......|
T Consensus 83 g~-~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A 146 (157)
T PRK15363 83 KH-WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA 146 (157)
T ss_pred hh-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999885 5554444433
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=2.2e-10 Score=116.35 Aligned_cols=220 Identities=19% Similarity=0.158 Sum_probs=141.3
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
......++...|++++|+++++.....-.+...++-..|.++..+|++++|...|...+..+|++...+..+..++....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 33445567777999999999988888888888888889999999999999999999999999999888888887763322
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHH--------------------------------HHHHHHHHHccCchHHHHHH
Q 013800 281 ----RDQHRALTYFERAALAAPQDSNIL--------------------------------AAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 281 ----~d~~~A~~~~~~al~~~p~~~~~~--------------------------------~~la~~~~~~g~~~~A~~~~ 324 (436)
.+.+.-..+|++.....|...... .++-.++....+..-...++
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 135666777777766666422211 11111111111111111111
Q ss_pred HHHHHH-----------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 013800 325 EEHIQV-----------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 325 ~~~~~~-----------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~ 375 (436)
..+... ..|...|++++|++++++||+..|..++.+...|.++...|+ +.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~-~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD-LK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-HH
Confidence 111100 344456677777777777777777777777777777777766 77
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 376 KALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 376 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+|.+.++.|-.+++.+-.+-...+..+++.|+.++|.+.......-
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 7777777777777666666666666666777777766666555443
No 101
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=2.9e-10 Score=115.33 Aligned_cols=207 Identities=15% Similarity=0.061 Sum_probs=150.7
Q ss_pred HHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE-YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
..-+..+..+++ .++.+.+.++.-+...++.+.|..+.+++++. ..+++.+|..+|.++...+++.+|+.....+++-
T Consensus 464 lqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 344566666666 56666666666666667777777777777776 3345566777777777777777666666666555
Q ss_pred CCCC----------------------------------------------------------------------------
Q 013800 262 DPGD---------------------------------------------------------------------------- 265 (436)
Q Consensus 262 ~p~~---------------------------------------------------------------------------- 265 (436)
.|+|
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 4441
Q ss_pred ---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCch
Q 013800 266 ---------------------------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDG 318 (436)
Q Consensus 266 ---------------------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 318 (436)
...|...+..+...+ +.++|..|+.++-.++|..+..|+..|.++...|...
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~-~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG-NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH
Confidence 123334444433333 3667777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHH------------hHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 319 EDDKAQEEHIQV------------LPIQSKGDLEGAEE--YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 319 ~A~~~~~~~~~~------------~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
+|...+..++.. .++.+.|+..-|.. .+..+++++|.++++|+.+|.++..+|+ .++|.++|+.+
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd-~~~Aaecf~aa 780 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD-SKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc-hHHHHHHHHHH
Confidence 777777765554 78888898888887 9999999999999999999999999999 99999999999
Q ss_pred HHhCCCCH
Q 013800 385 VQASPADS 392 (436)
Q Consensus 385 l~~~p~~~ 392 (436)
+++.+.+|
T Consensus 781 ~qLe~S~P 788 (799)
T KOG4162|consen 781 LQLEESNP 788 (799)
T ss_pred HhhccCCC
Confidence 99998776
No 102
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.31 E-value=1.1e-10 Score=98.37 Aligned_cols=102 Identities=15% Similarity=0.039 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++..+..+.+|..++..|++++|+..|+-++.++|.+...|++||.++..+++ |.+|+.+|.+++.++|+++..++++|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 44445555555555566666666555555555555555555555555555543 55555555555555555555555555
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
.++...|+.+.|.+.|+.++...
T Consensus 111 ----------------------~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ----------------------ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ----------------------HHHHHcCCHHHHHHHHHHHHHHh
Confidence 44455555555555555555443
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-11 Score=116.63 Aligned_cols=240 Identities=9% Similarity=0.028 Sum_probs=180.8
Q ss_pred hHHHHHhhcCCCCCCC---hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 013800 182 PPMYLAMGLGISVPGF---DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRAE 252 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~ 252 (436)
-..++..++.+.-.+. ...|..+|+.|..+++|++|+++-..-+-+ .-..+..--++|+++..+|.|++|+
T Consensus 36 Gv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~ 115 (639)
T KOG1130|consen 36 GVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEAL 115 (639)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHH
Confidence 3456777776655322 256888999999999999999875543322 2233455678999999999999999
Q ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHhCCC------CH
Q 013800 253 DYYNHATMADPG------DGESWMQYAKLVWELHR-------------------DQHRALTYFERAALAAPQ------DS 301 (436)
Q Consensus 253 ~~~~~al~~~p~------~~~~~~~la~~~~~~~~-------------------d~~~A~~~~~~al~~~p~------~~ 301 (436)
.+..+-+.+..+ ...+++++|.+|...|+ .++.|.++|+.-+++... ..
T Consensus 116 ~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqG 195 (639)
T KOG1130|consen 116 TCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQG 195 (639)
T ss_pred HHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 998887765332 46789999999987664 124556666665555432 23
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhC------CCCH
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILAN------PGDG 357 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~------p~~~ 357 (436)
.++-+||+.++-+|+++.|+..-+.-+.. .++.-.|+++.|+++|++++.+. ...+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45568889999999999998877654443 77888899999999999987653 2346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASP------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+..+.||..|.-..+ +++|+.++.+-+.+.. ....+++.||.++-.+|..++|+.+.++.+++.
T Consensus 276 QscYSLgNtytll~e-~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKE-VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 778999999999988 9999999999877643 234789999999999999999999998888765
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=6.7e-11 Score=116.08 Aligned_cols=113 Identities=24% Similarity=0.145 Sum_probs=106.0
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
+...|..++..|+|++|+.+|+++++++|+++.+++++|.++...|++++|+..+++++.++|.++.+++.+|.+++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45567888889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+ |++|+..|+++++++|++..+...++.+...+
T Consensus 85 ~-~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 E-YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred C-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5 99999999999999999999999888776555
No 105
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.29 E-value=9.7e-11 Score=114.94 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=85.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+...|..++..|++++|+.+|.++++++|.++.++..+|.++..+++ +++|+..+++++.++|+++.+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~-~~eAl~~~~~Al~l~P~~~~a~~~lg------ 77 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN-FTEAVADANKAIELDPSLAKAYLRKG------ 77 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCCHHHHHHHH------
Confidence 45567777777778888888888877777777777777777777764 77777777777777777777777777
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++..+|++++|+..|+++++++|++..+...++.+...+
T Consensus 78 ----------------~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 78 ----------------TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ----------------HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 6777777777777777777777777777777776665554
No 106
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.1e-09 Score=105.48 Aligned_cols=254 Identities=18% Similarity=0.161 Sum_probs=200.1
Q ss_pred CCCChHHHHHhhcCCCCCCCh-hhhhhHhhhhhhCCCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 013800 178 RPVSPPMYLAMGLGISVPGFD-DAGEVVDLIMPNFDDS---AEAE-----EYYKRMIDEYPCHPLLLRNYAQLLQKKGDL 248 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~-~~~~~lg~~~~~~g~~---~~A~-----~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 248 (436)
+.+.+...|..|+..-|.+.+ ..+.+.-..--+.|+. ++++ -.|++.+..+|-+.+.|+.+-.+....|+.
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~ 338 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDK 338 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCH
Confidence 444556667777777774333 2222222222233442 3333 347888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcc
Q 013800 249 YRAEDYYNHATMADPGDG---------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILAAYACFLWEME 315 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g 315 (436)
+.-.+.|++|+...|... ..|.+++..-.-.-.|.+.+.+.|+.+|++-|. .+.+|..++.+...+.
T Consensus 339 ~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 339 DRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHc
Confidence 999999999999887642 345555532222234689999999999999997 5788999999999999
Q ss_pred CchHHHHHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 316 DDGEDDKAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 316 ~~~~A~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
+...|.+++..++-. .+-.++++++.+..+|++-|+..|.+..+|...|.+-..+|+ .+.|...|+-|
T Consensus 419 ~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd-tdRaRaifelA 497 (677)
T KOG1915|consen 419 NLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD-TDRARAIFELA 497 (677)
T ss_pred ccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh-HHHHHHHHHHH
Confidence 999999999877655 667788999999999999999999999999999999999999 99999999999
Q ss_pred HHhCCCC-H-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhh
Q 013800 385 VQASPAD-S-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTA 432 (436)
Q Consensus 385 l~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~a 432 (436)
+....-+ + ..|..+..+-...|.++.|..+|++.|+..++...+..-|
T Consensus 498 i~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 498 ISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 8754322 2 4567778889999999999999999999998877665543
No 107
>PLN03077 Protein ECB2; Provisional
Probab=99.28 E-value=7e-10 Score=121.81 Aligned_cols=227 Identities=10% Similarity=0.050 Sum_probs=154.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM-------- 270 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------- 270 (436)
..+..+-..|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..|++.+...+-+...+.
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 4667777888888888888888887643 34567777788888888888888888887653222222111
Q ss_pred ---------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHH
Q 013800 271 ---------------------------QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKA 323 (436)
Q Consensus 271 ---------------------------~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 323 (436)
.+-..|.+.| ++++|...|+.. +.+...|..+...+...|+.++|.++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G-~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG-RMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC-CHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 2224444554 377777777664 55677777788888888888888888
Q ss_pred HHHHHHH-------------hHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 324 QEEHIQV-------------LPIQSKGDLEGAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 324 ~~~~~~~-------------~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
+++.... ..+.+.|++++|..+|+...+..+ -+...|..+..++.+.|+ +++|.+.+++. ...
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~-~~eA~~~~~~m-~~~ 654 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK-LTEAYNFINKM-PIT 654 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHC-CCC
Confidence 8776654 556677788888888877764322 125677777777777777 77777777764 244
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA 436 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ya 436 (436)
|+ ..+|..+...+...|+.+.+....++++++.|+...... ++|+|+
T Consensus 655 pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 655 PD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 54 556666666666677777777777777777777666555 556653
No 108
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=1.4e-09 Score=110.58 Aligned_cols=242 Identities=15% Similarity=0.045 Sum_probs=164.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-----DLYRAE 252 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-----~~~~A~ 252 (436)
+++.|..++......-. +.....-..|.++.++|++++|...|+..|+.+|++...+..+..+..... +.+.-.
T Consensus 19 ~~~~AL~~L~~~~~~I~-Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 19 DYEEALEHLEKNEKQIL-DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred CHHHHHHHHHhhhhhCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 44466777766554444 455667788999999999999999999999999999999999998884332 456667
Q ss_pred HHHHHHHHhCCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Q 013800 253 DYYNHATMADPGD--------------------------------GESWMQYAKLVWELHRDQHRALTYFERAALA---A 297 (436)
Q Consensus 253 ~~~~~al~~~p~~--------------------------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~---~ 297 (436)
+.|+......|.. |..+..+-.+|....+ ..-...++...+.. .
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K-~~~i~~l~~~~~~~l~~~ 176 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK-AAIIESLVEEYVNSLESN 176 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH-HHHHHHHHHHHHHhhccc
Confidence 7777776666543 1111111111110000 00111111111110 0
Q ss_pred ------------CCCH--HHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHH
Q 013800 298 ------------PQDS--NILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 298 ------------p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~ 351 (436)
|... -+++.+++.+...|++++|+..++++|.. .++...|++.+|.+.++.|-.
T Consensus 177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred CCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1111 12355666666677777777776666655 899999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PAD-------SHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+++.|-.+-...+..+.+.|+ .++|.+.+..-...+ |.. .+.....|.+|.+.|++..|++.|..+....
T Consensus 257 LD~~DRyiNsK~aKy~LRa~~-~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 257 LDLADRYINSKCAKYLLRAGR-IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred CChhhHHHHHHHHHHHHHCCC-HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999998888888999999999 999999988765443 211 1333556889999999999999998887754
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.26 E-value=4.1e-10 Score=119.45 Aligned_cols=177 Identities=12% Similarity=0.009 Sum_probs=147.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS----- 301 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~----- 301 (436)
..|.+..+|..+...+...+++++|++.++.+++..|+...+++.+|.+++..+. +.++... .++..-+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhhhh--hhhhhcccccchhHH
Confidence 4688999999999999999999999999999999999999999999998877765 7666655 6665555444
Q ss_pred --------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 302 --------------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 302 --------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
.+++.+| .+|.++|++++|...|+++++.+|+++.+++++|..|
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA----------------------~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLA----------------------EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 6666666 8899999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHh--------------------CCCCHHH--------HHHHH------------HHHHHCCC
Q 013800 368 WELHHDHDKALCYFERAVQA--------------------SPADSHV--------LAAYA------------CFLWETEE 407 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~--------------------~p~~~~~--------~~~la------------~~~~~~g~ 407 (436)
... + .++|+.++.+|+.. +|++.+. ...++ ..|...++
T Consensus 161 ae~-d-L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 161 EEE-D-KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred HHh-h-HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Confidence 999 6 99999999998764 3444322 12222 55777889
Q ss_pred hHHHHHHHHHHHhhCCCChhHHh
Q 013800 408 DEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 408 ~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+++++.+++.+++..|....+..
T Consensus 239 ~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 239 WDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred hhHHHHHHHHHHhcCCcchhhHH
Confidence 99999999999999988766554
No 110
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=9e-10 Score=108.80 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=161.1
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.+...|+|++|+....+.+...|++..++...-.++.+.++|++|+...++-....-.+ ...+..|.|.+.++. .++|
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk-~Dea 98 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK-LDEA 98 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc-HHHH
Confidence 44556999999999999999999999999999999999999999995544433222222 222788999999986 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----hHHHHcCCHHHHHHH---HHHHHHhCCC-CH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----LPIQSKGDLEGAEEY---FSRAILANPG-DG 357 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~g~~~~A~~~---~~~al~~~p~-~~ 357 (436)
+.+++ -+++.+..++...++++++++++++|.+.|+...+. ....+.+-...+-.. ..+.+...|. ..
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 99999 567777888899999999999999999999876554 111111111111111 2333333444 57
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQAS-------PAD--------SHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+.++|.|.++...|+ |.+|++.+++++.+. ..+ ..+...++.++..+|+.++|...|...+..+
T Consensus 176 el~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 899999999999999 999999999995431 111 1466889999999999999999999999887
Q ss_pred CCCh
Q 013800 423 PIRQ 426 (436)
Q Consensus 423 p~~~ 426 (436)
|.-.
T Consensus 255 ~~D~ 258 (652)
T KOG2376|consen 255 PADE 258 (652)
T ss_pred CCCc
Confidence 5543
No 111
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.24 E-value=5.1e-11 Score=112.73 Aligned_cols=217 Identities=12% Similarity=0.033 Sum_probs=168.2
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGESWMQYAK 274 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~ 274 (436)
|.-+++.|+....+..|+.+++...++. .+|..+|++|+.+++|++|+++-..-+.+ .-..+..--++|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4567889999999999999999887764 57889999999999999999986654433 2234556678999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCc-------------hH-------HHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQ------DSNILAAYACFLWEMEDD-------------GE-------DDKAQEEHI 328 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~-------------~~-------A~~~~~~~~ 328 (436)
++-.+|. |++|+.++.+-+.+... ...+++++|.+|...|+- ++ |.+.|.+-+
T Consensus 104 tlKv~G~-fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGA-FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcc-cchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 9877775 99999999998876532 567899999999988752 12 222332222
Q ss_pred HH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 329 QV------------------LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 329 ~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
+. ..|+-+|+|++|+..-+.-+++.... -.++.++|.++..+|+ ++.|+++|+++
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~t 261 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLT 261 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHH
Confidence 21 67778899999999988888775432 3578999999999999 99999999997
Q ss_pred HHhC----CCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 385 VQAS----PAD--SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 385 l~~~----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+.+. ... ....+.||..|.-..++++|+.++.+-+.+..
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 222 35678899999999999999999988777643
No 112
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.7e-10 Score=102.14 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR--DQHRALTYFE 291 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--d~~~A~~~~~ 291 (436)
.+..+.-++.-+..+|++++-|..||.+|+.+|+++.|...|.+++++.|++++++..+|.+++...+ +..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45555556666666666666666666666666666666666666666666666666666666555432 2344555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+++.++|.+..++..|| ..++..|+|.+|+..++..++..|.
T Consensus 218 ~al~~D~~~iral~lLA----------------------~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 218 QALALDPANIRALSLLA----------------------FAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHhcCCccHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhcCCC
Confidence 55555555555555555 4455555555555555555555443
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=8.3e-10 Score=111.48 Aligned_cols=181 Identities=13% Similarity=0.132 Sum_probs=151.5
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
..++.++...|-...|+..|++. ..|-....||...|+..+|.....+-++ .|.++..|..+|.+...
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d--- 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD--- 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC---
Confidence 45677888888888888888764 5667788888888888889888888888 77778877777766433
Q ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 282 DQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
-.+|++++++..+ +..+...+| ......++|+++.++++..++++|-....|
T Consensus 470 -----~s~yEkawElsn~~sarA~r~~~----------------------~~~~~~~~fs~~~~hle~sl~~nplq~~~w 522 (777)
T KOG1128|consen 470 -----PSLYEKAWELSNYISARAQRSLA----------------------LLILSNKDFSEADKHLERSLEINPLQLGTW 522 (777)
T ss_pred -----hHHHHHHHHHhhhhhHHHHHhhc----------------------cccccchhHHHHHHHHHHHhhcCccchhHH
Confidence 3455555555432 344555555 556668999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+.+|.+..++++ ++.|.++|..++.++|++.++|.+++.+|..+++..+|...+++++.-+
T Consensus 523 f~~G~~ALqlek-~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 523 FGLGCAALQLEK-EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HhccHHHHHHhh-hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999 9999999999999999999999999999999999999999999999875
No 114
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.16 E-value=1.4e-09 Score=95.17 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A 286 (436)
..+..+...+...++.++.+ ..+++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...+. +++|
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~eA 91 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTKA 91 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHHH
Confidence 33555566665555555544 467788899999999999999999999888765 34588899988888875 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH-------HHHHHHHHHHHhCCCC
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE-------GAEEYFSRAILANPGD 356 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~-------~A~~~~~~al~~~p~~ 356 (436)
+.+|++++.++|.....+.+++.++...| ..+...|+++ +|+.+|++++..+|.+
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~---------------~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRG---------------EQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhh---------------HHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999888888887776655 4444566655 4444444555555543
No 115
>PLN03077 Protein ECB2; Provisional
Probab=99.15 E-value=9e-09 Score=113.11 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=186.6
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh-CCCCHHHH---------------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE-YPCHPLLL--------------------- 235 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~--------------------- 235 (436)
+.+.|...+..-. . .+...|..+...+.+.|++++|+.+|++++.. .|+.....
T Consensus 439 ~~~~A~~vf~~m~---~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 439 CIDKALEVFHNIP---E-KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred CHHHHHHHHHhCC---C-CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 4556666666432 2 34568999999999999999999999999864 34332211
Q ss_pred -------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Q 013800 236 -------------RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--PQD 300 (436)
Q Consensus 236 -------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--p~~ 300 (436)
..+...|.+.|++++|...|+.. +.+...|..+...|...|. .++|+.+|++..+.. |+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd- 588 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPD- 588 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCC-
Confidence 22336778889999999998875 6688899999999888875 999999999998754 44
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
...+..+...+...|..++|.++++..... .++.+.|++++|.+.+++. .+.|+ ..+|..|-.+
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~a 666 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNA 666 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHH
Confidence 445666667889999999999999988743 7888999999999999885 35565 7788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 367 ~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+...++ .+.|....++++++.|++...+..++.+|...|++++|.+..+...+.
T Consensus 667 c~~~~~-~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 667 CRIHRH-VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHcCC-hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 877777 999999999999999999999999999999999999999998887664
No 116
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.15 E-value=1.5e-08 Score=93.84 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=85.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL---LRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 271 (436)
+..+...|......|++++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++..|++ +.+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3445566777777899999999999999999988744 5899999999999999999999999998876 567888
Q ss_pred HHHHHHHHc--------------CC---HHHHHHHHHHHHHhCCCCHH
Q 013800 272 YAKLVWELH--------------RD---QHRALTYFERAALAAPQDSN 302 (436)
Q Consensus 272 la~~~~~~~--------------~d---~~~A~~~~~~al~~~p~~~~ 302 (436)
+|.++...+ +| ..+|+..|++.++..|+...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 887754332 11 24688999999999998654
No 117
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.14 E-value=8e-09 Score=93.34 Aligned_cols=168 Identities=18% Similarity=0.159 Sum_probs=109.4
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWM 270 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 270 (436)
.+..+...|...+..|++.+|+..|++.+...|... .+.+.+|.+++..|++++|+..+++.+...|.+ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 345677888899999999999999999999988754 789999999999999999999999999999886 46888
Q ss_pred HHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013800 271 QYAKLVWELHRD----------QHRALTYFERAALAAPQDSNILA---AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 271 ~la~~~~~~~~d----------~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
.+|.+++....+ ..+|+..|+..++..|+...+-. .+..+-..+... +..-...|.+.|
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~--------e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH--------ELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHCTT
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHcc
Confidence 899887765321 35899999999999998654322 111110000000 000004555556
Q ss_pred CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcC
Q 013800 338 DLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHH 372 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~ 372 (436)
.|..|+..++.+++..|+.. +++..++.++..+|.
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 66666666666665555542 345555555555555
No 118
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.14 E-value=1.8e-09 Score=88.19 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=96.5
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 272 (436)
..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467888999999999999999999999999876 5789999999999999999999999999998885 6789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
|.++...++ +++|+.+++++++..|++..+..
T Consensus 83 ~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGD-KEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCC-hHHHHHHHHHHHHHCcCChhHHH
Confidence 999999875 99999999999999999876554
No 119
>PRK11906 transcriptional regulator; Provisional
Probab=99.14 E-value=5e-09 Score=102.39 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=131.7
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCH
Q 013800 236 RNYAQLLQKKGD---LYRAEDYYNHAT---MADPGDGESWMQYAKLVWEL--------HRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 236 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~--------~~d~~~A~~~~~~al~~~p~~~ 301 (436)
+..|......+. .+.|+.+|.+++ +++|+.+.++..++.+++.. ..+..+|.+..++|++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 666666655544 467889999999 99999999999999988765 1234688999999999999999
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
.++..+| .++...++++.|+..|++|+.++|+.+.+|+..|.+....|+ .++|++.+
T Consensus 339 ~a~~~~g----------------------~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i 395 (458)
T PRK11906 339 KILAIMG----------------------LITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICI 395 (458)
T ss_pred HHHHHHH----------------------HHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 9999999 666677889999999999999999999999999999999999 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHCCChHHHHHHHHHHH
Q 013800 382 ERAVQASPADSHVLAAYACF-LWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 382 ~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al 419 (436)
+++++++|.-..+-...-++ .+-....++|+..|-+-.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 99999999866554444444 445566778888775543
No 120
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=5.3e-09 Score=91.48 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=134.4
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.|..++.+|.-++.. |-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++
T Consensus 64 RA~l~fERGvlYDSl----------------GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 64 RAQLLFERGVLYDSL----------------GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHhcchhhhh----------------hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 345566666665554 8889999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++|....+..+.|..++.-|+ |.-|...+.+-.+.+|+++.--..+- +-...-+..
T Consensus 128 LDp~y~Ya~lNRgi~~YY~gR-~~LAq~d~~~fYQ~D~~DPfR~LWLY-----------------------l~E~k~dP~ 183 (297)
T COG4785 128 LDPTYNYAHLNRGIALYYGGR-YKLAQDDLLAFYQDDPNDPFRSLWLY-----------------------LNEQKLDPK 183 (297)
T ss_pred cCCcchHHHhccceeeeecCc-hHhhHHHHHHHHhcCCCChHHHHHHH-----------------------HHHhhCCHH
Confidence 999999999999988888776 99999999999999999986433222 112233455
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHHH
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~ 413 (436)
+|...+.+--+...+.-..|+.... .+|+ .. -...++++.+-..++. +.++.+|+.+...|+.++|..
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~---yLgk-iS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEF---YLGK-IS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHH---HHhh-cc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 5554433322222222233333222 2222 11 1223333333333222 556677777777777777777
Q ss_pred HHHHHHhh
Q 013800 414 SSDQFQQV 421 (436)
Q Consensus 414 ~~~~al~l 421 (436)
.|+-++..
T Consensus 259 LfKLaian 266 (297)
T COG4785 259 LFKLAVAN 266 (297)
T ss_pred HHHHHHHH
Confidence 77766654
No 121
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=5.7e-09 Score=97.36 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=116.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...|..++...+.+++......-.-+|.+++.+|+|++|+..|+-+...+..+.+.+.++|.+++-+|.|.+|.....+
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 56677888888887777544455566788999999999999999999987777889999999999999999999887665
Q ss_pred HHH--------------hCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 258 ATM--------------ADPG------------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 258 al~--------------~~p~------------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+-+ ++.+ ..+-...+|.+.+.... |++|+..|++++.-+|+....-..++.|+
T Consensus 117 a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 117 APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH-YQEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 421 1111 12233446666666554 99999999999999999888888899999
Q ss_pred HHccCchHHHHHHHHHHH
Q 013800 312 WEMEDDGEDDKAQEEHIQ 329 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~ 329 (436)
.++.-++-+...+.-+++
T Consensus 196 yKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 196 YKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HhcchhhhHHHHHHHHHH
Confidence 998888777776664443
No 122
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.13 E-value=4e-09 Score=107.85 Aligned_cols=144 Identities=16% Similarity=0.057 Sum_probs=107.4
Q ss_pred HhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-------CHHHHHHHHHHH
Q 013800 226 DEYPCHPLLL--RNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR-------DQHRALTYFERA 293 (436)
Q Consensus 226 ~~~P~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------d~~~A~~~~~~a 293 (436)
...|.+..+| +..|.-+...++ ..+|+.+|++|++++|+++.++..++.++....+ +...+....+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445665544 455655555444 7788999999999999998888888776654421 134556666666
Q ss_pred HHh--CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013800 294 ALA--APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 294 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
+.+ +|.++.++..+| ..+...|++++|...+++|+.++| +..+|..+|.++...|
T Consensus 411 ~al~~~~~~~~~~~ala----------------------~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G 467 (517)
T PRK10153 411 VALPELNVLPRIYEILA----------------------VQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG 467 (517)
T ss_pred hhcccCcCChHHHHHHH----------------------HHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence 664 666777777777 666677889999999999999888 4788888899988888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH
Q 013800 372 HDHDKALCYFERAVQASPADSH 393 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p~~~~ 393 (436)
+ +++|++.|++|+.++|.++.
T Consensus 468 ~-~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 468 D-NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred C-HHHHHHHHHHHHhcCCCCch
Confidence 8 89999999999998888764
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.12 E-value=2.7e-09 Score=87.12 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAA 306 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~ 306 (436)
..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.+++..++ +++|+.+|++++...|++ +.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 445666666666666666666666666666554 3455556666555553 666666666666655553 344555
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
+| .++...|++++|+.++.++++..|++..
T Consensus 82 ~~----------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LG----------------------MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HH----------------------HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55 5555555566666666666655555544
No 124
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.12 E-value=1.7e-08 Score=111.65 Aligned_cols=245 Identities=15% Similarity=0.063 Sum_probs=174.7
Q ss_pred CCCChHHHHHhhcCCCCCCC----hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 013800 178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~ 247 (436)
+++.+..++..++...+... ..++..+|.++...|++++|..++++++...... ..++..+|.++...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 45566666666665433222 1345677888888999999999999888753321 2456678888889999
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 013800 248 LYRAEDYYNHATMADPG--------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLWEM 314 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 314 (436)
+++|...+++++..... ....+..+|.+++..| ++++|...+++++.+... ....+..++.+....
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999999988875221 2234556787888876 499999999988876332 244556688888888
Q ss_pred cCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhc
Q 013800 315 EDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGDG----EIMSQYAKLVWELH 371 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g 371 (436)
|+.+.|...+.++... ..+...|+.+.|..++.......+... ..+..++.++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 9988888877765432 122345777777777666544322222 12567899999999
Q ss_pred CCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 372 HDHDKALCYFERAVQASP------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
+ +++|+..+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 706 ~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 706 Q-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred C-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 9 9999999999987632 22357788999999999999999999999998643
No 125
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.2e-09 Score=98.11 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH
Q 013800 248 LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH 327 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 327 (436)
.++-+.-++.-+..+|+|.+-|..||.+|...++ +..|...|.+++++.|++++.+..+|.++....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------------ 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGR-ASDALLAYRNALRLAGDNPEILLGLAEALYYQA------------ 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------------
Confidence 4566667777788888888888888888888875 888888888888888888888888885543322
Q ss_pred HHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 328 IQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 328 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
......++...++++++.+|.+..+++.||..+++.|+ |.+|...++..+...|.+.
T Consensus 205 -------~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~-~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 205 -------GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGD-YAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred -------CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCCC
Confidence 23456678888888888888888888888888888888 8888888888888776654
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=4.8e-10 Score=106.45 Aligned_cols=189 Identities=17% Similarity=0.135 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY 289 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~ 289 (436)
++.+.++..++..+.... .+..+....|.++...|++++|++.+.+. ++.+.......++...++ ++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R-~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR-PDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC-HHHHHHH
Confidence 344555555544433221 23344555566666778888777777653 456666666667777765 8888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
++.+-+.+.+..-+....+ ++....| .+++|...|++.....+..+.+++.++.++
T Consensus 154 l~~~~~~~eD~~l~qLa~a----------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 154 LKNMQQIDEDSILTQLAEA----------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHCCSCCHHHHHHHHH----------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHH----------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 8777777666554444444 3333333 577888888887666677778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh-HHHHHHHHHHHhhCCCChhHH
Q 013800 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED-EDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~p~~~~a~ 429 (436)
..+|+ |++|...+++++..+|.++.++.+++.+...+|+. +.+.+++.+.....|.++-..
T Consensus 212 l~~~~-~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 212 LQLGH-YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHhCC-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 88888 88888888888888888888888888888888877 445566777777777766543
No 127
>PRK11906 transcriptional regulator; Provisional
Probab=99.10 E-value=4e-09 Score=103.06 Aligned_cols=161 Identities=9% Similarity=-0.001 Sum_probs=134.2
Q ss_pred hhHhhhhhhCC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCH
Q 013800 202 EVVDLIMPNFD---DSAEAEEYYKRMI---DEYPCHPLLLRNYAQLLQKK---------GDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 202 ~~lg~~~~~~g---~~~~A~~~~~~al---~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 266 (436)
+..|...+..+ ..+.|+.+|.+++ +++|+.+.+|..+|.++... .+..+|.+..++|++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 34444443333 3568999999999 99999999999999999753 345689999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.++..+|.+++..++ ++.|...|++|+.++|+.+.+|+..| ++....|+.++|.+.+
T Consensus 339 ~a~~~~g~~~~~~~~-~~~a~~~f~rA~~L~Pn~A~~~~~~~----------------------~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 339 KILAIMGLITGLSGQ-AKVSHILFEQAKIHSTDIASLYYYRA----------------------LVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHhhcc-hhhHHHHHHHHhhcCCccHHHHHHHH----------------------HHHHHcCCHHHHHHHH
Confidence 999999999999986 99999999999999999999999999 8888899999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 013800 347 SRAILANPGDGEIMSQYAKL-VWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~-~~~~g~d~~~A~~~~~~al~ 386 (436)
+++++++|.-..+-...-++ .+.... .++|+.+|-+--+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 435 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKETE 435 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhccc
Confidence 99999999866554444444 444556 7899998876443
No 128
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=2.1e-08 Score=93.69 Aligned_cols=203 Identities=14% Similarity=0.079 Sum_probs=159.1
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
...+|..|+.+++-....+.+.. ..-..+|.|++.+|+|++|.+.|+-+...+.-+.+.+.++|.+++.+|. |.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHHHHH
Confidence 34788999999988876655443 6677899999999999999999999999888889999999999999987 999987
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH-------HHHH-hHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE-------HIQV-LPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-------~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
...++ |+.+--...+-.+..+.++..+-...-.. .+.. .+.+..-.|++|++.|++++.-+|+....-
T Consensus 113 ~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 113 IAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 66554 56655555555555666665554433221 1111 555566789999999999999999988888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
.++|.||+++.- |+-+.+.+.-.+...|+...+....+..++++=+-..|....+..
T Consensus 189 Vy~ALCyyKlDY-ydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 189 VYMALCYYKLDY-YDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 899999999988 999999999999999999999988888888775555555544443
No 129
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.10 E-value=2.4e-09 Score=94.14 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..+.+++.+|.++...|++++|+.+|++++...|+. ..++..+|.++...++ +++|+.+|++++...|++...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-HDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHH
Confidence 455678888888888899999999999988876653 4688888888888875 999999999999999988888888
Q ss_pred HHHHHHHcc
Q 013800 307 YACFLWEME 315 (436)
Q Consensus 307 la~~~~~~g 315 (436)
+|.++...|
T Consensus 112 lg~~~~~~g 120 (172)
T PRK02603 112 IAVIYHKRG 120 (172)
T ss_pred HHHHHHHcC
Confidence 884444444
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.09 E-value=1.4e-09 Score=83.53 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=91.1
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.+..+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57788899999999999999999999999999899999999999999999999999999999999999999999999888
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 013800 280 HRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~ 299 (436)
+. +++|..+++++++..|.
T Consensus 82 ~~-~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GK-YEEALEAYEKALELDPN 100 (100)
T ss_pred Hh-HHHHHHHHHHHHccCCC
Confidence 75 99999999999988763
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.08 E-value=2.3e-09 Score=82.33 Aligned_cols=93 Identities=17% Similarity=0.301 Sum_probs=88.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
.++...|++++|+..++++++..|.+..++..+|.++...++ +++|+..|++++...|.+..++..++.++...|++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 778889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 013800 411 DSKSSDQFQQVAPI 424 (436)
Q Consensus 411 A~~~~~~al~l~p~ 424 (436)
|...+.+++...|.
T Consensus 87 a~~~~~~~~~~~~~ 100 (100)
T cd00189 87 ALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHccCCC
Confidence 99999999988763
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=6.3e-08 Score=89.77 Aligned_cols=181 Identities=13% Similarity=0.030 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 013800 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW---MQYAKLVWELHRDQHRALTYFERAALAAPQD---SNI 303 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~ 303 (436)
..+..++..|..+...|++++|++.|++++...|..+.+. +.+|.+++..++ +++|+..+++.++..|++ +.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~-y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-LPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCcCCCchHHH
Confidence 3567788999999999999999999999999999986554 889999999874 999999999999999886 456
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHH-hHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHH
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQV-LPIQSKGDLEGAEEYFSRAILANPGDGE-----------------IMSQYAK 365 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~ 365 (436)
++.+|.+....+.. .+..+... .....+....+|+..|++.++..|+..- --+..|.
T Consensus 109 ~Y~~g~~~~~~~~~-----~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 109 LYMRGLTNMALDDS-----ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred HHHHHHhhhhcchh-----hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777554332200 00000000 0111122345788889999999887532 1245677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 366 LVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 366 ~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
.|++.|. |..|+.-++.+++..|+.+ +++..+..++..+|..++|.+....
T Consensus 184 ~Y~~~~~-y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 184 YYTKRGA-YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHcCc-hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8899999 9999999999999998754 7889999999999999999876554
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.07 E-value=2.5e-08 Score=90.13 Aligned_cols=166 Identities=15% Similarity=0.114 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS---NIL 304 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~---~~~ 304 (436)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..+ ++++|+..|++.++..|+++ .++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-DYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 45788999999999999999999999999998864 678999999999987 59999999999999999864 567
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhH---HHHcCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLP---IQSKGDLEGAEEYFSRAILANPGDGEI-----------------MSQYA 364 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~g~~~~A~~~~~~al~~~p~~~~~-----------------~~~la 364 (436)
+.+|.++..... .. ...++...+|+..|+..+...|+...+ -+.+|
T Consensus 83 Y~~g~~~~~~~~--------------~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 83 YMLGLSYYKQIP--------------GILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHHHH--------------HHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--------------cchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765544311 22 445566788999999999999986321 24567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHH
Q 013800 365 KLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 412 (436)
..|++.|. +..|+..++.+++..|+.. +++..++.++.++|..+.|.
T Consensus 149 ~~Y~~~~~-y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGK-YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT--HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHccc-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88899999 9999999999999999976 67888999999999988553
No 134
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=5e-09 Score=91.77 Aligned_cols=121 Identities=19% Similarity=0.196 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHH
Q 013800 247 DLYRAEDYYNHATMADPGD--GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 321 (436)
.+..+...+...++..+.+ ...++.+|.++...+. +++|+..|++++.+.|+. +.++.++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~~~~lg------------- 79 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE-YAEALQNYYEAMRLEIDPYDRSYILYNIG------------- 79 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccchhhHHHHHHHH-------------
Confidence 3455555555554555544 5566788877777764 888888888888886653 34777788
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhcCCHH-------HHHHHHHHHHHh
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW-------ELHHDHD-------KALCYFERAVQA 387 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~d~~-------~A~~~~~~al~~ 387 (436)
.++...|++++|+.+|++++.++|.....+.++|.++. .+|+ ++ +|+..|++++..
T Consensus 80 ---------~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 80 ---------LIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGD-SEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred ---------HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHccc-HHHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888888888888888888888888887 5555 55 444444455555
Q ss_pred CCCC
Q 013800 388 SPAD 391 (436)
Q Consensus 388 ~p~~ 391 (436)
+|.+
T Consensus 150 ~p~~ 153 (168)
T CHL00033 150 APGN 153 (168)
T ss_pred Cccc
Confidence 6653
No 135
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.07 E-value=1.3e-07 Score=84.47 Aligned_cols=203 Identities=23% Similarity=0.290 Sum_probs=174.0
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMID--EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK- 274 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 274 (436)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45667777888888999999999999997 678888999999999999999999999999999988887555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQ---DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
++...+. +++|...|++++...|. ........+ ..+...++++.|+..+.+++.
T Consensus 139 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 139 ALYELGD-YEEALELYEKALELDPELNELAEALLALG----------------------ALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHcCC-HHHHHHHHHHHHhcCCCccchHHHHHHhh----------------------hHHHHhcCHHHHHHHHHHHHh
Confidence 6777764 99999999999887773 444444445 556678999999999999999
Q ss_pred hCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 352 ANPG-DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 352 ~~p~-~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
..+. ....+..++..+...+. +.+|+..+..++...|.....+..++..+...+..+++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGK-YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHccc-HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999 79999999999999998 999999999999999987778888888888888899999999999999886
No 136
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=7.7e-10 Score=81.47 Aligned_cols=68 Identities=25% Similarity=0.396 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
++..|..+|.+++..|++++|+.+|+++++++|+++.+|+++|.++..+++++.+|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666666666666666666666666666666666666666666665126666666666666665
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.05 E-value=9.1e-10 Score=81.07 Aligned_cols=68 Identities=13% Similarity=0.284 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCC
Q 013800 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE-EDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p 423 (436)
+++.+|..+|.+++..|+ +++|+..|.++++++|+++.++.++|.++..+| ++++|++.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 357899999999999999 999999999999999999999999999999999 79999999999999987
No 138
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=8.5e-08 Score=92.74 Aligned_cols=145 Identities=14% Similarity=0.171 Sum_probs=92.6
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+...|-..+.+|+..+. .+...|...+.+-++.....-|..++.+++.+-|.-...|+.+..+-..+|+...|...|+
T Consensus 87 ~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 344466677788888777 5667788888888888888888888888888888777888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
+.+...|+. .+|......-...+ +.+.|...|++-+-..|+ ...|..++.+....|+...+...|.
T Consensus 166 rW~~w~P~e-qaW~sfI~fElRyk-eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 166 RWMEWEPDE-QAWLSFIKFELRYK-EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHHcCCCcH-HHHHHHHHHHHHhh-HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 888887764 23333333322222 244444455444444432 2334444444444444444444443
No 139
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=1.8e-09 Score=102.61 Aligned_cols=170 Identities=19% Similarity=0.121 Sum_probs=140.8
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
......|.++...|++++|++.+.+. ++.++......++..+++++.|...++.+.+.+.+..-+...-+.+.+.
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 33455667888889999999998875 5778888999999999999999999999988887776666666666666
Q ss_pred HcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 279 LHR-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 279 ~~~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (436)
.|+ .+.+|.-.|+...+..+..+..+..++ .++..+|+|++|...+++++..+|+++
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A----------------------~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLA----------------------VCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHH----------------------HHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 665 489999999998888788899999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
+++.+++.+...+|+..+.+.+++.+....+|+++.+.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999944778889999889999987543
No 140
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.04 E-value=1.4e-08 Score=103.87 Aligned_cols=155 Identities=10% Similarity=-0.041 Sum_probs=118.6
Q ss_pred HhCCCCHHHHHH--HHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 260 MADPGDGESWMQ--YAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 260 ~~~p~~~~~~~~--la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
..-|.+..+|-. .|.-+.... +++.+|+.+|++|++++|++..++..++.++.....+.. ..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~--------------~~ 396 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP--------------LD 396 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC--------------cc
Confidence 345566555543 343333221 137899999999999999999999988865533221100 00
Q ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q 013800 336 KGDLEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 413 (436)
..++.++.....+++.+ +|.++.++..+|......|+ +++|...+++|+.++|. ..+|..+|.++...|+.++|++
T Consensus 397 ~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~-~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 397 EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK-TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 12456677777777664 77788999999999999999 99999999999999995 8899999999999999999999
Q ss_pred HHHHHHhhCCCChhHHh
Q 013800 414 SSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 414 ~~~~al~l~p~~~~a~~ 430 (436)
.|++|+.++|.++....
T Consensus 475 ~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 475 AYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHhcCCCCchHHH
Confidence 99999999999876544
No 141
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=1.9e-08 Score=88.44 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
....+++.+|.++...+ ++++|+.+|++++.+.|+. ..++..+| .++...|+++
T Consensus 33 ~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~ 89 (172)
T PRK02603 33 KEAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDPNDRSYILYNMG----------------------IIYASNGEHD 89 (172)
T ss_pred hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhccchHHHHHHHHH----------------------HHHHHcCCHH
Confidence 45667888888887776 4999999999999887663 45778888 8888889999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
+|+.+|++++...|.+...+..+|.++...|+ ...+...++.++.. +++|++++++++.
T Consensus 90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~a~~~~~~A~~~--------------------~~~A~~~~~~a~~ 148 (172)
T PRK02603 90 KALEYYHQALELNPKQPSALNNIAVIYHKRGE-KAEEAGDQDEAEAL--------------------FDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHhHhhCHHHHHHH--------------------HHHHHHHHHHHHh
Confidence 99999999999999999999999999988877 55555444444321 4555566666666
Q ss_pred hCCCC
Q 013800 421 VAPIR 425 (436)
Q Consensus 421 l~p~~ 425 (436)
++|+.
T Consensus 149 ~~p~~ 153 (172)
T PRK02603 149 LAPNN 153 (172)
T ss_pred hCchh
Confidence 55554
No 142
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.5e-08 Score=92.57 Aligned_cols=205 Identities=13% Similarity=0.046 Sum_probs=146.2
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
.+..+|++|++++.--.+.+|.+-..+..+|.||+...+|..|-++|++.-.+.|+......-.|..++..+. +..|+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i-~ADALr 99 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI-YADALR 99 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence 4456777888888877777887777778888888888888888888888888888777777777777777765 777776
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------LPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
..........-.......-+-+.+..+++..+..++++.-.. -+.++.|+++.|++-|+.|++...-++-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 655443321111222233344444555555555555543311 5677889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCH-------------------------HHHHHHHHHHHHCCChH
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQA----SPADS-------------------------HVLAAYACFLWETEEDE 409 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~----~p~~~-------------------------~~~~~la~~~~~~g~~~ 409 (436)
+-++++.+.++.++ ++.|+++..+.++. .|+.. +++...+.++++.|+++
T Consensus 180 lAYniALaHy~~~q-yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQ-YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hHHHHHHHHHhhhh-HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 99999999999999 99999988777653 33311 44555677889999998
Q ss_pred HHHHHH
Q 013800 410 DDSKSS 415 (436)
Q Consensus 410 ~A~~~~ 415 (436)
.|.+.+
T Consensus 259 AA~eaL 264 (459)
T KOG4340|consen 259 AAQEAL 264 (459)
T ss_pred HHHHHh
Confidence 885543
No 143
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.99 E-value=2.7e-10 Score=105.63 Aligned_cols=222 Identities=11% Similarity=0.014 Sum_probs=167.2
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...|+.|+++|.|++|+.+|.+++..+|.++-.+.+.|.+|++..++..|...+..|+.++.....+|...+..-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999889986
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------CchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEME---------DDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~ 348 (436)
..+|.+.++.++++.|++.+....++.+-.-.. .+-.|++-..+.+.. ..+...|.++.++.+|.+
T Consensus 181 -~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~ 259 (536)
T KOG4648|consen 181 -NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS 259 (536)
T ss_pred -HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence 999999999999999998887766654322110 011122222222211 566677788888888877
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
.+....++.....+ +..+.+.-+ +..|+..+.+++..+|.........+.+..-.|...++...++.++.+.|...
T Consensus 260 ~~A~~~~~~~L~~~-~~~~~KI~~-~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 260 PRATIDDSNQLRIS-DEDIDKIFN-SNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred cccccCccccCccc-HHHHHHHhh-cchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 77666665555555 666777777 88898888888887776554444445554455556666666666666655443
No 144
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.8e-08 Score=92.21 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=151.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
+.+..+|.+|++++.--.+.+|.+...+..+|.||+.... |..|..||++.-.+.|......+..+..++..+.+..|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 3567889999999999999999999999999999999985 999999999999999999999999999999999999888
Q ss_pred HHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 322 KAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 322 ~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
+........ .+.+..+++..+.. .++.-| +++....+.|.++++.|+ +++|++-|+.|++.
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rs----LveQlp~en~Ad~~in~gCllykegq-yEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRS----LVEQLPSENEADGQINLGCLLYKEGQ-YEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHH----HHHhccCCCccchhccchheeecccc-HHHHHHHHHHHHhh
Confidence 876533321 22333344443333 334445 578899999999999999 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCCChhHHh
Q 013800 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV----APIRQGAVT 430 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l----~p~~~~a~~ 430 (436)
..-++-.-++++.++++.|+++.|+++...+++. .|.+.-.++
T Consensus 174 sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 9998999999999999999999999987766654 466655443
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.98 E-value=1.4e-09 Score=83.47 Aligned_cols=82 Identities=15% Similarity=0.312 Sum_probs=73.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013800 335 SKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 412 (436)
.+|+|+.|+..|+++++..|. +...++.+|.++++.|+ +++|+..+++ +..++.+....+.+|.++.++|++++|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 368999999999999999995 56778889999999999 9999999999 8888888899999999999999999999
Q ss_pred HHHHHH
Q 013800 413 KSSDQF 418 (436)
Q Consensus 413 ~~~~~a 418 (436)
++|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.97 E-value=4.3e-08 Score=83.61 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013800 282 DQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-- 356 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-- 356 (436)
++..+...+++.+...|+. ..+.+.++ .++...|++++|+..|+.++...|+.
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA----------------------~~~~~~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLA----------------------KAAYEQGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence 4777777788888888777 34455566 77777888888888888888877654
Q ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 357 -GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 357 -~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
..+.+.||.++...|+ +++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus 84 ~~~a~l~LA~~~~~~~~-~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQ-YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3567788888888888 8888888865 23334445677788888888888888888888764
No 147
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.5e-08 Score=95.38 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=47.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
.++.++++|.+|+..+.++|+++|+|..+++..|.++..+|+ |+.|+..|+++++++|+|..+...+..+..+..++.+
T Consensus 265 ~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 265 ACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555 5555555555555555555555555555444433333
Q ss_pred -HHHHHHHHHh
Q 013800 411 -DSKSSDQFQQ 420 (436)
Q Consensus 411 -A~~~~~~al~ 420 (436)
..+.|...+.
T Consensus 344 kekk~y~~mF~ 354 (397)
T KOG0543|consen 344 KEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhh
Confidence 2444444443
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.95 E-value=4.9e-08 Score=92.92 Aligned_cols=185 Identities=18% Similarity=0.193 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHcCCHHHH
Q 013800 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G----DGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~d~~~A 286 (436)
++++|..+|.++ |.+|...+++++|.+.|.++....- + -...+...+.++... ++++|
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--~~~~A 93 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--THHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--CHHHH
Confidence 566666665554 5666677777777777777765422 1 133455556565444 58899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAILANPG--D----GEI 359 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~ 359 (436)
+.+|++++.+. ...|++..|...+...- .+|... |++++|+++|++|+++... . ...
T Consensus 94 i~~~~~A~~~y--------------~~~G~~~~aA~~~~~lA--~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 94 IECYEKAIEIY--------------REAGRFSQAAKCLKELA--EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHHH--------------HHCT-HHHHHHHHHHHH--HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHH--------------HhcCcHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 99999887652 22333333322222222 777777 8999999999999987322 1 457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERAVQASPAD------S-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+..+|.++..+|+ |++|++.|++.....-++ . ..+...+.+++..|+...|.+.+++.....|.|.....
T Consensus 158 ~~~~A~l~~~l~~-y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 158 LLKAADLYARLGR-YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 7899999999999 999999999998754221 1 34566778899999999999999999999999877543
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.94 E-value=2.4e-09 Score=82.18 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013800 211 FDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
.|+++.|+.+|+++++..|. +...++.+|.+++..|++++|+.++++ .+.++.+....+.+|.+++.+++ +++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHHH
Confidence 58999999999999999995 456788899999999999999999999 88888888999999999999986 999999
Q ss_pred HHHHH
Q 013800 289 YFERA 293 (436)
Q Consensus 289 ~~~~a 293 (436)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 150
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.6e-08 Score=95.25 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..+++|++.|+.++++ |.+|+..+.++|+++|.|..+++..|.++..+|+++.|+..|++++++.|....+..
T Consensus 257 ~~~~lNlA~c~lKl~~-~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKE-YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHHhhHHHHHHHhhhh-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3578899999999999 999999999999999999999999999999999999999999999999999866544
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=2.9e-09 Score=77.38 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34444555555555555555555555555555555555555555555555555555555544
No 152
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.92 E-value=5.9e-07 Score=85.51 Aligned_cols=205 Identities=17% Similarity=0.074 Sum_probs=156.6
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+.+.+..|+..+....+...--.......++...|++..|..-..++++..|.++.++.....+|...|++.+....+.
T Consensus 132 gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 132 GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35556778888887774433345667778899999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCC------------------------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 257 HATMADP------------------------------------------GDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 257 ~al~~~p------------------------------------------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
+.-+..- .++.+...++.-+...+ ++++|.+..+.++
T Consensus 212 ~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~-~~~~A~~~i~~~L 290 (400)
T COG3071 212 KLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG-DHDEAQEIIEDAL 290 (400)
T ss_pred HHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC-ChHHHHHHHHHHH
Confidence 8765411 11445555665566665 5999999999988
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+..-+.. ....++ ....++...-++.+++.++. .++.+.+.|.+|..+|+.+++..|. ...+..
T Consensus 291 k~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~ 366 (400)
T COG3071 291 KRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAE 366 (400)
T ss_pred HhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHH
Confidence 7653332 111111 22334444444444444444 8899999999999999999999887 788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
+|.++.++|+ ..+|.+.+++++..
T Consensus 367 la~~~~~~g~-~~~A~~~r~e~L~~ 390 (400)
T COG3071 367 LADALDQLGE-PEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHHH
Confidence 9999999999 99999999999854
No 153
>PRK15331 chaperone protein SicA; Provisional
Probab=98.91 E-value=1.4e-08 Score=86.15 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=92.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
.-++.+|++++|...|+-+...+|.+++.|..||.++..+++ |++|+..|..+..++++++...+..|.++..+|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 777889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHhhhh
Q 013800 411 DSKSSDQFQQVAPIRQGAVTTAN 433 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~a~~~an 433 (436)
|+..|..++. .|.+......|.
T Consensus 124 A~~~f~~a~~-~~~~~~l~~~A~ 145 (165)
T PRK15331 124 ARQCFELVNE-RTEDESLRAKAL 145 (165)
T ss_pred HHHHHHHHHh-CcchHHHHHHHH
Confidence 9999999998 455555554443
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.90 E-value=5.6e-09 Score=75.86 Aligned_cols=65 Identities=28% Similarity=0.511 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~ 301 (436)
+.+|..++..|++++|+..|+++++.+|+++.+|+.+|.+++..++ +++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-YDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCC
Confidence 4689999999999999999999999999999999999999999875 9999999999999999875
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.90 E-value=1.1e-07 Score=81.11 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=64.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCc
Q 013800 244 KKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDD 317 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 317 (436)
..++...+...+++.+...|+. ..+.+.+|.+++..+ ++++|+..|++++...|+. ..+.+.++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g-~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA--------- 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG-DYDEAKAALEKALANAPDPELKPLARLRLA--------- 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCHHHHHHHHHHHH---------
Confidence 3455555555555555555555 344455555555554 3666666666666555443 22344445
Q ss_pred hHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 318 GEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 318 ~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.++...|++++|+..++. +...+-.+.++..+|.++...|+ +++|+..|++||
T Consensus 93 -------------~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~-~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 -------------RILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGD-YDEARAAYQKAL 145 (145)
T ss_pred -------------HHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC-HHHHHHHHHHhC
Confidence 555566666666666644 22233345556666666666666 666666666553
No 156
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1e-06 Score=87.64 Aligned_cols=212 Identities=17% Similarity=0.049 Sum_probs=132.9
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG----------------- 264 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------------- 264 (436)
+..+.+.++++..++|+..++ ..++.+..++...|++++++|+|++|...|+..++.+.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 455667777788888887777 444555566777788888888888888887777543222
Q ss_pred --------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------C-------CHHHHHHHHHHHHHcc
Q 013800 265 --------------DGESWMQYAKLVWELHRDQHRALTYFERAALAAP--------Q-------DSNILAAYACFLWEME 315 (436)
Q Consensus 265 --------------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p--------~-------~~~~~~~la~~~~~~g 315 (436)
.-+.+++.|.++...++ |.+|++.+++++++.- + -..+...++.++..+|
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 23456777777777764 8888888877744321 1 1234567777777777
Q ss_pred CchHHHHHHHHHHHH-------------------------------------------------------------hHHH
Q 013800 316 DDGEDDKAQEEHIQV-------------------------------------------------------------LPIQ 334 (436)
Q Consensus 316 ~~~~A~~~~~~~~~~-------------------------------------------------------------~~~~ 334 (436)
+.++|..+|...++. .+.+
T Consensus 239 qt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred chHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777765554 0111
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHH
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~ 413 (436)
..+.-+++.+...+.-...|...--.........+... +.+|.+.+....+.+|.+ ..+...++++.+.+|+++.|++
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~-~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKK-HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 11111111111111111122222222233333344445 788899999888889987 5678889999999999999999
Q ss_pred HHHHH
Q 013800 414 SSDQF 418 (436)
Q Consensus 414 ~~~~a 418 (436)
.+...
T Consensus 398 il~~~ 402 (652)
T KOG2376|consen 398 ILSLF 402 (652)
T ss_pred HHHHH
Confidence 99933
No 157
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=9.5e-07 Score=97.85 Aligned_cols=220 Identities=16% Similarity=0.123 Sum_probs=162.2
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESW 269 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 269 (436)
...++.++...|++++|..++++++...+... .++..+|.++...|++++|...+.+++...... ..++
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 34467788889999999999999998655432 356778899999999999999999999764321 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQ--------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------- 330 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------- 330 (436)
..+|.+++..| ++++|...+++++.+... ....+..++.+++..|++++|...+.+.+..
T Consensus 535 ~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 535 LQQSEILFAQG-FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 67888888876 599999999999886321 2334567888899999999998888765442
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----H
Q 013800 331 ------LPIQSKGDLEGAEEYFSRAILANPGD---GEIMS----QYAKLVWELHHDHDKALCYFERAVQASPADS----H 393 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~ 393 (436)
.++...|++++|...+.+++.+.... ..... .....+...|+ .+.|..++.......+... .
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD-KEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC-HHHHHHHHHhcCCCCCccchhHHH
Confidence 57778899999999999997763321 11111 11233444667 8888888777654332222 2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 394 VLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
.+..++.++...|++++|...+.+++...
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 24678999999999999999999998864
No 158
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.84 E-value=2e-06 Score=76.69 Aligned_cols=190 Identities=24% Similarity=0.259 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 211 FDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATM--ADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+..++.++...+. +..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK-YEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh-HHHH
Confidence 46778888889999888886 378889999999999999999999999998 788889999999999888875 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL-PIQSKGDLEGAEEYFSRAILANP---GDGEIMSQ 362 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~ 362 (436)
+..+.+++...+.........+ . ++...|+++.|...|.+++...| .....+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLA----------------------LGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 9999999999888755555555 5 68889999999999999998777 45667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPA-DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++..+...++ ++.|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.
T Consensus 173 ~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 173 LGALLEALGR-YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhhHHHHhcC-HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 7777888888 99999999999999999 6899999999999999999999999999999887
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.84 E-value=2e-07 Score=87.16 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
..++..|..+....++|++|+..|++.++..|+. +.+++.+| .+|+..|++++|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG----------------------~~y~~~g~~~~A~ 200 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLG----------------------QLNYNKGKKDDAA 200 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHH----------------------HHHHHcCCHHHHH
Confidence 3444444433222223555555555555555554 34555555 5555555555555
Q ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 344 EYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 344 ~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
..|+++++..|+ .+++++.+|.++..+|+ +++|+..|+++++..|+..
T Consensus 201 ~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 201 YYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-TAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCH
Confidence 555555555444 24455555555555555 5555555555555555544
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.84 E-value=6.3e-08 Score=92.16 Aligned_cols=200 Identities=19% Similarity=0.128 Sum_probs=140.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP--CH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G----DG 266 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~ 266 (436)
..|...|+.+...+++++|...|.++....- ++ +..+...+.++... ++++|+.+|++++.+.- + -.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4566677888888999999999999987532 11 25666777776665 99999999999998732 2 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
..+..+|.+|....+++++|+++|++|+++.... ...+..++ .++...|+|+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A----------------------~l~~~l~~y~ 172 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA----------------------DLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----------------------HHHHHTT-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH----------------------HHHHHhCCHH
Confidence 6788899988777236999999999999874322 12233444 8888999999
Q ss_pred HHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH--CC
Q 013800 341 GAEEYFSRAILANPGD------G-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-----HVLAAYACFLWE--TE 406 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~------~-~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~--~g 406 (436)
+|+..|++.....-++ . ..++..+.|+...|+ +..|...+++....+|... .+...+..++.. ..
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e 251 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVE 251 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHH
Confidence 9999999998754221 1 345677788888988 9999999999999988643 344445554432 34
Q ss_pred ChHHHHHHHHHHHhhC
Q 013800 407 EDEDDSKSSDQFQQVA 422 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~ 422 (436)
.+++++..|.+...++
T Consensus 252 ~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 252 AFTEAVAEYDSISRLD 267 (282)
T ss_dssp CHHHHCHHHTTSS---
T ss_pred HHHHHHHHHcccCccH
Confidence 5677777776665554
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.83 E-value=1.2e-07 Score=88.68 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=89.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCC
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETE 406 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g 406 (436)
....|+|++|+..|+..++..|++ +.+++.+|.+++..|+ +++|+..|++++...|++ +++++.+|.++..+|
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~-~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK-KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 356799999999999999999998 5899999999999999 999999999999998885 588999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCChhHHh
Q 013800 407 EDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++++|...|+++++..|+...+..
T Consensus 232 ~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHH
Confidence 999999999999999999876554
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=98.82 E-value=9.5e-08 Score=81.14 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
.+..+.+|.-++..|++++|...|+-....+|.+++.|+.||.++..++. |++|+..|-.+..++++++...+..|
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHH
Confidence 34455555555556666666665555555555555555555555555543 55555555555555555555555555
No 163
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=1.6e-06 Score=93.46 Aligned_cols=201 Identities=12% Similarity=0.087 Sum_probs=114.2
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHH-hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMID-EYPCH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (436)
+..-.|+..-....+.++.++|.+..++|+. +++.. ..+|..+-++...-|.-+.-.+.|++|.+... -..++.
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~ 1534 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHL 1534 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHH
Confidence 4444555555555555666666666666554 22221 13344444444444444455555555555432 123444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI 350 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 350 (436)
.|..+|...+. +++|.++|+..++.-.+...+|..++ ..++.+.+-+.|...+.+||
T Consensus 1535 ~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~----------------------~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1535 KLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYA----------------------DFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHH----------------------HHHhcccHHHHHHHHHHHHH
Confidence 45555555544 56666666666665555556666666 44445555566666666666
Q ss_pred HhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 351 LANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 351 ~~~p~--~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+.-|. +.+...-.|.+.++.|+ .+.+..+|+-.+..+|.-.+.|..+...-...|+.+.+...|++++.+
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GD-aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGD-AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCC-chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 66665 55666666666666666 666666666666666666666666666666666666666666666655
No 164
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.80 E-value=2e-07 Score=91.59 Aligned_cols=117 Identities=22% Similarity=0.198 Sum_probs=75.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCch
Q 013800 239 AQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDG 318 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 318 (436)
-.++...++++.|++.+++..+.+|+ +...++.++...++ ..+|++.++++++..|.+...+...+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~-E~~AI~ll~~aL~~~p~d~~LL~~Qa---------- 241 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE-EVEAIRLLNEALKENPQDSELLNLQA---------- 241 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc-HHHHHHHHHHHHHhCCCCHHHHHHHH----------
Confidence 34444556677777777766666654 44445666555543 66677777777766676666666666
Q ss_pred HHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013800 319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 319 ~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~ 382 (436)
..+...++++.|+.+.++++.+.|.+...|+.|+.+|..+|+ +++|+..+.
T Consensus 242 ------------~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d-~e~ALlaLN 292 (395)
T PF09295_consen 242 ------------EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD-FENALLALN 292 (395)
T ss_pred ------------HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC-HHHHHHHHh
Confidence 555666666777777777777777777777777777777766 777665554
No 165
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.78 E-value=1.9e-08 Score=73.69 Aligned_cols=66 Identities=24% Similarity=0.225 Sum_probs=53.5
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
+..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456888888888888888888888888888888888888888888888888888888777766664
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.77 E-value=1.2e-06 Score=75.22 Aligned_cols=152 Identities=17% Similarity=0.125 Sum_probs=111.0
Q ss_pred hhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM-ADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
..+.=+.+....-..+.++..| ...-.+.+|..+...|++.+|..+|++++. +.-+++..+..++...+..+. +..|
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~-~A~a 143 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE-FAAA 143 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc-HHHH
Confidence 3334455556665666666666 334567788888888888888888888876 466778888888888888864 8888
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 287 LTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 287 ~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
...+++..+.+|. .++....++ +.+..+|++.+|...|+.++...|+ +++...++
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~a----------------------R~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~ 200 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFA----------------------RTLAAQGKYADAESAFEVAISYYPG-PQARIYYA 200 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHH----------------------HHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHH
Confidence 8888888888775 456666677 7777788888888888888888777 77777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 013800 365 KLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al 385 (436)
..+..+|+ .++|...+....
T Consensus 201 e~La~qgr-~~ea~aq~~~v~ 220 (251)
T COG4700 201 EMLAKQGR-LREANAQYVAVV 220 (251)
T ss_pred HHHHHhcc-hhHHHHHHHHHH
Confidence 88888887 666666555443
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.76 E-value=2.4e-07 Score=91.00 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
+.++.|+..|++..+.+|+ +...++ .++...++-.+|++.+.++++..|.+...+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA----------------------~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL 237 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLA----------------------RVYLLMNEEVEAIRLLNEALKENPQDSELL 237 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHH----------------------HHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 4599999999999999876 455567 777778899999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
...+..+...++ ++.|+...++++.+.|.+...|..|+.+|..+|+++.|+..++.+
T Consensus 238 ~~Qa~fLl~k~~-~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKK-YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999 999999999999999999999999999999999999998777643
No 168
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.74 E-value=5.3e-06 Score=75.42 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=130.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 272 (436)
.-|...|...++.|++++|+..|+.+...+|..+ .+.+.++.++++.+++++|+..+++-+.+.|.++ .+++..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3455555566666999999999999999998765 7889999999999999999999999999988764 466777
Q ss_pred HHHHHHHcC----C---HHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013800 273 AKLVWELHR----D---QHRALTYFERAALAAPQDSNIL---AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 273 a~~~~~~~~----d---~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
|.+++..-. | ..+|+..|+..++..|+...+- ..+..+-..+... +-.+. +.|.+.|.|-.|
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~-------Em~Ia-ryY~kr~~~~AA 186 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH-------EMAIA-RYYLKRGAYVAA 186 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH-------HHHHH-HHHHHhcChHHH
Confidence 777654322 2 2578899999999999854322 2222111111111 11111 778888888888
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 343 EEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 343 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
+..++.+++..|+. .+++..+..+|..+|- .++|.+.-.-.-...|++.
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl-~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGL-TDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcCCCCc
Confidence 88888888886654 4567777788888888 7777665443333345543
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.73 E-value=3.7e-08 Score=72.13 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=59.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
...|++++|+..|++++..+|++..+++.+|.++...|+ +++|...+++++..+|+++.++..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 467999999999999999999999999999999999999 9999999999999999988777777653
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.72 E-value=4.1e-07 Score=74.30 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ---DSNILAAY 307 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~l 307 (436)
+++.+|.++...|+.++|+.+|++++...... ..++..+|..+..+|+ +++|+..+++++...|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 44555555555555555555555555543222 3344455555555543 55555555555554444 44444444
Q ss_pred H
Q 013800 308 A 308 (436)
Q Consensus 308 a 308 (436)
+
T Consensus 82 A 82 (120)
T PF12688_consen 82 A 82 (120)
T ss_pred H
Confidence 4
No 171
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2.6e-07 Score=80.05 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=97.3
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
....-|+-++..|+|++|..-|..+++.-|... -+|.+.|.++.+++.++.|++...++|+++|.+..++...|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 345567888999999999999999999998754 467899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|..+.. |++|+..|+++++.+|....+....+
T Consensus 177 ayek~ek-~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 177 AYEKMEK-YEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHhhhh-HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999976 99999999999999999877766555
No 172
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.68 E-value=4.7e-08 Score=90.99 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+-..|+-|+++|.|++|+.+|.+++..+|.++..+.+.|..|+...+ |..|...+..|+.++.....+|-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaLd~~Y~KAYSRR~------ 172 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS-FAQAEEDCEAAIALDKLYVKAYSRRM------ 172 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHhhHHHHHHHHHHH------
Confidence 56789999999999999999999999999999999999999999987 99999999999999988888888888
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
.+...+|...+|.+.++.+|++.|++.+..-.++.+
T Consensus 173 ----------------~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 173 ----------------QARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred ----------------HHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 777788999999999999999999877766555543
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.67 E-value=6.6e-07 Score=73.08 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=81.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~ 404 (436)
.++...|+.++|+.+|++++...... ..++..+|.++..+|+ +++|+..+++++...|+ +..+...++.++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 88899999999999999999976544 5689999999999999 99999999999999898 77888889999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 013800 405 TEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 405 ~g~~~~A~~~~~~al~l 421 (436)
.|+.++|+..+-.++.-
T Consensus 88 ~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAE 104 (120)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887753
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.67 E-value=1.4e-07 Score=70.14 Aligned_cols=67 Identities=24% Similarity=0.198 Sum_probs=40.7
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
.++...+++++|++++++++..+|+++..+..+|.++..+|++++|++.|+++++..|+++.+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3455556666666666666666666666666666666666666666666666666666655554433
No 175
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=2.1e-07 Score=80.65 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=91.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD-----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.-++..|+|++|...|..||++.|.. ...|.+.|.++++++. ++.|+..+.++++++|.+..++...|.+|.++
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 66778999999999999999999875 3578899999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..+++|++.|+++++++|..+.+..
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHH
Confidence 9999999999999999999887654
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.64 E-value=6.2e-06 Score=70.87 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=126.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL-AAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
.++=+.+.+..-..+.+...|.. .-.+.+|..+.+.|+ +.+|...|++++. +..+++..+..++
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr-~~EA~~hy~qalsG~fA~d~a~lLglA------------- 131 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGR-YHEAVPHYQQALSGIFAHDAAMLLGLA------------- 131 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhh-hhhhHHHHHHHhccccCCCHHHHHHHH-------------
Confidence 33444555555555556666654 345778889999986 9999999999986 4577889999999
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
...+..+++..|...+++..+.+|. .++....+|.++...|+ +.+|...|+.++...|+ +.+...++
T Consensus 132 ---------~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~ypg-~~ar~~Y~ 200 (251)
T COG4700 132 ---------QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAISYYPG-PQARIYYA 200 (251)
T ss_pred ---------HHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhCCC-HHHHHHHH
Confidence 7788899999999999999999885 57888999999999999 99999999999999998 78889999
Q ss_pred HHHHHCCChHHHHHHHHH----HHhhCCCCh
Q 013800 400 CFLWETEEDEDDSKSSDQ----FQQVAPIRQ 426 (436)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~----al~l~p~~~ 426 (436)
..+..+|+.++|...+.. +..-.|+|.
T Consensus 201 e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 201 EMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 999999988887665544 444445543
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.63 E-value=2.8e-07 Score=68.46 Aligned_cols=69 Identities=32% Similarity=0.360 Sum_probs=60.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.+|...++|++|++++++++.++|+++..|..+|.++..+|+ +.+|+..|+++++..|+++.+....+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-YEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 567888999999999999999999999999999999999999 999999999999999988877665543
No 178
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.60 E-value=4.5e-06 Score=78.63 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=122.2
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GES 268 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 268 (436)
++.+++..+.+..++.+++.+-+..+.+....+ .+...++.++.-++.++++++.|++|+...-++ -.+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444455555554444444321111 334445555555555555555555555442211 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQ----------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------- 330 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------- 330 (436)
+..+|.++..+. |+++|+-+..+|.++-.. ...+++.++..+...|....|.+..+++.+.
T Consensus 165 cv~Lgslf~~l~-D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLK-DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHH-hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 444554444443 355555555555544211 1223344555555555555555555544333
Q ss_pred ----------hHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHhCC
Q 013800 331 ----------LPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDHD-----KALCYFERAVQASP 389 (436)
Q Consensus 331 ----------~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~~-----~A~~~~~~al~~~p 389 (436)
.+|...|+.+.|..-|++|+..-. ...+++...|.++....- .. +|++.-.+++++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~-~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRL-QNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHH
Confidence 788888999999999998876532 134566666666654433 33 48888888887654
Q ss_pred CCH------HHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 390 ADS------HVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 390 ~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.-. ..+..++.+|..+|..++-.+.+.++-+.
T Consensus 323 ~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 323 SIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 422 56788899999999888877777665543
No 179
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.60 E-value=1.4e-05 Score=80.48 Aligned_cols=49 Identities=8% Similarity=-0.054 Sum_probs=40.9
Q ss_pred CCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh
Q 013800 179 PVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE 227 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 227 (436)
.-+..+....|+..-.-..+-.|..++..|.+.|.++.|...|++++..
T Consensus 229 slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred ccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3467788888887766455678999999999999999999999998874
No 180
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=2.5e-06 Score=75.00 Aligned_cols=174 Identities=17% Similarity=0.094 Sum_probs=126.8
Q ss_pred HHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 186 LAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
+..++++.| ..+..+..+|..+...|+|+.|.+.|...++++|.+.-+..+.|..++.-|++.-|.+.+.+-.+.+|.+
T Consensus 88 ftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 88 FSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred hhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 778899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFE-RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
|.--..+-. .+..-|+.+|...+. ++...+.+.. .|+. +-+-.|+..+ ..
T Consensus 167 PfR~LWLYl--~E~k~dP~~A~tnL~qR~~~~d~e~W-G~~i-------------------------V~~yLgkiS~-e~ 217 (297)
T COG4785 167 PFRSLWLYL--NEQKLDPKQAKTNLKQRAEKSDKEQW-GWNI-------------------------VEFYLGKISE-ET 217 (297)
T ss_pred hHHHHHHHH--HHhhCCHHHHHHHHHHHHHhccHhhh-hHHH-------------------------HHHHHhhccH-HH
Confidence 854333322 222335777776543 4443332211 1111 1111222221 12
Q ss_pred HHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 345 YFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 345 ~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.++++..-..++ .++++.+|..+...|+ .++|...|+-++..+--
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~-~~~A~~LfKLaiannVy 269 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD-LDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhHH
Confidence 233333322222 4688999999999999 99999999999876643
No 181
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.54 E-value=3e-07 Score=90.04 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=66.4
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHhh-CCCC
Q 013800 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV---LAAYACFLWETEEDEDDSKSSDQFQQV-APIR 425 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~l-~p~~ 425 (436)
.+|+++..|+++|.+|+.+|+ |++|+..|+++++++|++..+ |+++|.+|..+|+.++|++++++++++ ++.|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR-VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 468899999999999999999 999999999999999999854 999999999999999999999999997 4544
No 182
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.54 E-value=9.9e-07 Score=75.69 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
|+.|.+.++.....+|.+++.++++|.++..+.++.... .....+++|+.-|++||.++|+..+++++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~------------es~~miedAisK~eeAL~I~P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP------------ESKKMIEDAISKFEEALKINPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH------------HHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc------------hHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 677888888888888888888888887777754332111 12245688999999999999999999999
Q ss_pred HHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 363 YAKLVWELHH----------DHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 363 la~~~~~~g~----------d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+|.++..++. -|++|..+|++|+..+|++......|-.+
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999976542 17889999999999999987666555443
No 183
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.52 E-value=2.6e-06 Score=68.83 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=87.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g 406 (436)
..+...|+.+.|++.|.+++.+.|..+.+|++.+.++.-+|+ .++|++.+.+++++..... .++...|.+|..+|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~-~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD-DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 677789999999999999999999999999999999999999 8999999999999976543 67788999999999
Q ss_pred ChHHHHHHHHHHHhhCCCChh
Q 013800 407 EDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~p~~~~ 427 (436)
+.+.|...|+.+.++-..|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHH
Confidence 999999999999998766654
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.51 E-value=9.2e-05 Score=70.64 Aligned_cols=214 Identities=17% Similarity=0.068 Sum_probs=172.8
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHHc
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DPGD---GESWMQYAKLVWELH 280 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~---~~~~~~la~~~~~~~ 280 (436)
.....|+.+.|+.+-+++....|.-+.++...-......|+++.|++..+...+. .++. ..+-..-+.......
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 3456799999999999999999999988888888889999999999999877653 3322 223333334444444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------hHHHHcCCHHHHHHHHHHH---H
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------LPIQSKGDLEGAEEYFSRA---I 350 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~g~~~~A~~~~~~a---l 350 (436)
-|...|...-.+++++.|+...+-..-+..+...|+..++-.+++...+. .+|....--+.++.-++++ .
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999988887 5555544444555555554 4
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhC
Q 013800 351 LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW-ETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~l~ 422 (436)
.+.|++.+....++..-+.-|+ +..|...-+.+....|. ..++..++.+.. +.|+..+....+.+++.-+
T Consensus 323 slk~nnaes~~~va~aAlda~e-~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGE-FSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hcCccchHHHHHHHHHHHhccc-hHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 5689999999999999999999 99999999999999998 456777787755 4599999999999999864
No 185
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=2.7e-05 Score=70.77 Aligned_cols=160 Identities=19% Similarity=0.126 Sum_probs=89.0
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---c
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---H 280 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~ 280 (436)
-+.+++..|++++|+...... .+.++...-..++.++.+.+-|+..+++...++.+. .+..||..+... +
T Consensus 114 aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGG 186 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccc
Confidence 345566666666666655542 234455555556666666666666666666554432 222222222211 1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
..+.+|.-+|+..-+..|-.+..+..++ .+...+|+|++|...++.+|..++++++++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~A----------------------v~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQA----------------------VCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHH----------------------HHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 1255566666666555555555555566 555666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.|+..+-...|.|.+.-.+.+.+....+|.++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666666666644444445555555556544
No 186
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=2.5e-05 Score=84.62 Aligned_cols=197 Identities=11% Similarity=0.133 Sum_probs=159.6
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|+.+=++....|.-+.-.+.|++|.+... -..+|..|..+|...+++++|.++|+..++...+...+|..+|..++.
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 4566666666666877888999999988753 357889999999999999999999999999988999999999999988
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 279 LHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
... -+.|...+++|++.-|. +.+.....| .+.++.|+.+.+..+|+..+..+|.-
T Consensus 1577 ~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfA----------------------qLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1577 QNE-AEAARELLKRALKSLPKQEHVEFISKFA----------------------QLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred ccH-HHHHHHHHHHHHhhcchhhhHHHHHHHH----------------------HHHhhcCCchhhHHHHHHHHhhCccc
Confidence 864 78999999999999998 677777777 78888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHH-HHHHHHHHCCChHHHHHHHHHHHh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PADSHVLA-AYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
.++|.-+...-.+.|+ .+.+..+|++++.+. |......+ .+-......|+.......-.+|.+
T Consensus 1634 tDlW~VYid~eik~~~-~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIKHGD-IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred hhHHHHHHHHHHccCC-HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 9999999999999999 899999999999875 33333332 233333444665554444444544
No 187
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.47 E-value=8.4e-06 Score=76.82 Aligned_cols=198 Identities=15% Similarity=0.063 Sum_probs=139.9
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHH----hCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMID----EYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESW 269 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 269 (436)
++.+..+..+.|+|.+++.+---.++ .+... -+++.+++..+....++.+++.+-+-.+.+-... ..+.
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 34444566777777776655433333 22111 2567788888888888888888777777663322 3566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
..++..+..+++ ++++++.|++|+++.-++. .+...++ .++....++++|.
T Consensus 126 l~~~~Ahlgls~-fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg----------------------slf~~l~D~~Kal 182 (518)
T KOG1941|consen 126 LSMGNAHLGLSV-FQKALESFEKALRYAHNNDDAMLELQVCVSLG----------------------SLFAQLKDYEKAL 182 (518)
T ss_pred hhHHHHhhhHHH-HHHHHHHHHHHHHHhhccCCceeeeehhhhHH----------------------HHHHHHHhhhHHh
Confidence 667777788876 8888888888887754432 3445666 7777788888888
Q ss_pred HHHHHHHHhCC----CC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Q 013800 344 EYFSRAILANP----GD------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWETEE 407 (436)
Q Consensus 344 ~~~~~al~~~p----~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~ 407 (436)
-+..+|.++.. ++ .-+++.++..+..+|. .-.|.++++++.++. +-.......+|.+|...|+
T Consensus 183 ~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd 261 (518)
T KOG1941|consen 183 FFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD 261 (518)
T ss_pred hhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc
Confidence 88888877632 12 3467788888999999 999999999987763 2233566788999999999
Q ss_pred hHHHHHHHHHHHhhC
Q 013800 408 DEDDSKSSDQFQQVA 422 (436)
Q Consensus 408 ~~~A~~~~~~al~l~ 422 (436)
.+.|..-|+++...-
T Consensus 262 ~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 262 LERAFRRYEQAMGTM 276 (518)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999999988753
No 188
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=4.2e-05 Score=79.71 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+++ +++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHHHH
Confidence 5666666666666666666666666666666666666666655555555555566666666666666654 666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHH
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKA 323 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 323 (436)
+++..+|. ......+-.++.+.+.+.+-.++
T Consensus 102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 102 RANQKYPS-EELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 55555555555555555443333
No 189
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=4.9e-06 Score=76.31 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=95.8
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAK 274 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 274 (436)
.++.+.-++..|+|..|...|..-++..|+.. .+++.||.+++.+|++++|...|..+++..|+ -++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 56677777888999999999999999999864 89999999999999999999999999998776 4789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++..+++ .++|...|+++++..|+...+.....
T Consensus 224 ~~~~l~~-~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 224 SLGRLGN-TDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHhcC-HHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999986 99999999999999999887765443
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.46 E-value=1e-06 Score=86.32 Aligned_cols=70 Identities=21% Similarity=0.140 Sum_probs=66.0
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcC
Q 013800 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI---MSQYAKLVWELHH 372 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~ 372 (436)
.+|+++.+|+++| .+|..+|+|++|+..|+++|+++|++.++ |+++|.+|..+|+
T Consensus 70 ~dP~~a~a~~NLG----------------------~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr 127 (453)
T PLN03098 70 ADVKTAEDAVNLG----------------------LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE 127 (453)
T ss_pred CCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC
Confidence 4688999999999 88999999999999999999999999865 9999999999999
Q ss_pred CHHHHHHHHHHHHHhC
Q 013800 373 DHDKALCYFERAVQAS 388 (436)
Q Consensus 373 d~~~A~~~~~~al~~~ 388 (436)
+++|+.+|++|+++.
T Consensus 128 -~dEAla~LrrALels 142 (453)
T PLN03098 128 -GKKAADCLRTALRDY 142 (453)
T ss_pred -HHHHHHHHHHHHHhc
Confidence 999999999999983
No 191
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.43 E-value=3.9e-06 Score=72.08 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchH
Q 013800 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHR---------DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 319 (436)
+.|.+.++.....+|.+++.+++.|.++.++.+ -+++|+.-|++||.++|+..++++++|.++...+....
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 334444444444444444444444444433321 15678888888999999999999999988877552111
Q ss_pred HHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 320 DDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 320 A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
..-....-|++|..+|++|...+|.+...+..|..+
T Consensus 88 -----------d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 88 -----------DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 111122457899999999999999987666555433
No 192
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.42 E-value=8.2e-06 Score=77.49 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
+|..+.....+.+..+.|..+|.+|.+..+....+|...|.+-+..++|.+.|..+|+.+++..|.+...|..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~----- 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYL----- 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHH-----
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-----
Confidence 344444444444445555555555553333344555555555444444444455555555555555555555555
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
..+...++.+.|..+|++++..-|... .+|..+...-...|+ .+....+.+++.+..|+
T Consensus 78 -----------------~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd-l~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 78 -----------------DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD-LESVRKVEKRAEELFPE 139 (280)
T ss_dssp -----------------HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTT
T ss_pred -----------------HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhh
Confidence 333344444455555555544433322 344444444444554 55555555555554444
No 193
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.41 E-value=2.3e-05 Score=78.93 Aligned_cols=198 Identities=16% Similarity=0.135 Sum_probs=105.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---------- 264 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------- 264 (436)
..|..+|.+|...|+.+.|..+|+++++.+= +-+.+|...|..-.+..+++.|+.+.++|...-..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4566666666666666666666666666432 12355666666666666666666666666543111
Q ss_pred --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013800 265 --------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 265 --------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
...+|..++.+....|- ++.....|++.+++.--.+....++|.++. ..
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gt-festk~vYdriidLriaTPqii~NyAmfLE----------------------eh 524 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGT-FESTKAVYDRIIDLRIATPQIIINYAMFLE----------------------EH 524 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------hh
Confidence 13355555555444543 666666666666666666666666664444 44
Q ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHCCChHH
Q 013800 337 GDLEGAEEYFSRAILAN--PGDGEIMSQYAKLVW--ELHHDHDKALCYFERAVQASPAD-S-HVLAAYACFLWETEEDED 410 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~--~~g~d~~~A~~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~ 410 (436)
.-++++.+.|++.+.+. |.-.++|+.+-..+. ..|...+.|..+|++||+..|.. . .++..++.+..+.|-...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555555565555553 233334433222211 11222555666666666555421 1 334444555555555555
Q ss_pred HHHHHHHHH
Q 013800 411 DSKSSDQFQ 419 (436)
Q Consensus 411 A~~~~~~al 419 (436)
|+.+|+++-
T Consensus 605 amsiyerat 613 (835)
T KOG2047|consen 605 AMSIYERAT 613 (835)
T ss_pred HHHHHHHHH
Confidence 555555544
No 194
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00013 Score=66.42 Aligned_cols=196 Identities=13% Similarity=0.080 Sum_probs=139.8
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEY-P-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~-P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
+.+...-++-+.-+.-+.+.+... - .+...+..-|.++...|++++|+....+. .+.++...--.++.++.+
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r- 152 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR- 152 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH-
Confidence 333333344444444444433322 2 23345566678889999999999888763 334455555567777776
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
++-|.+.++++.+++.+.. +..||..+.. +..-.+.++.|.-+|+..-+..|-.+..++.
T Consensus 153 ~d~A~~~lk~mq~ided~t--LtQLA~awv~------------------la~ggek~qdAfyifeE~s~k~~~T~~llnG 212 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDAT--LTQLAQAWVK------------------LATGGEKIQDAFYIFEELSEKTPPTPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHccchHHH--HHHHHHHHHH------------------HhccchhhhhHHHHHHHHhcccCCChHHHcc
Confidence 9999999999998876543 3334432211 1123456899999999998877777999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH-HHHHHhhCCCChh
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS-SDQFQQVAPIRQG 427 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~l~p~~~~ 427 (436)
.+.|...+|+ |++|...++.+|..++.+++++.++..+-..+|...++..- +.+.....|.+.-
T Consensus 213 ~Av~~l~~~~-~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 213 QAVCHLQLGR-YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHhcC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999 99999999999999999999999999999999998776554 4555555676554
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.41 E-value=0.00012 Score=66.62 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---IL 304 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~---~~ 304 (436)
.+..|+.-|...+..|++++|+..|+.+....|.. ..+...++..+++.+ ++++|+...++-+++.|+++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-EYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 35788999999999999999999999999988765 568888999988887 599999999999999998654 34
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE-----------------IMSQYAKLV 367 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~ 367 (436)
+..|......-+ .....+.-..+|+..|+..+...|+..- -=..+|..|
T Consensus 112 YlkgLs~~~~i~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 112 YLKGLSYFFQID--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred HHHHHHHhccCC--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433222111 2233344456788888999999887521 123567788
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCC
Q 013800 368 WELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQFQQVA-PIR 425 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~-p~~ 425 (436)
.+.|. +-.|+.-++.+++..|+.. +++..+..+|..+|-.++|.+.- +++..+ |+.
T Consensus 178 ~kr~~-~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s 237 (254)
T COG4105 178 LKRGA-YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDS 237 (254)
T ss_pred HHhcC-hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCC
Confidence 99999 9999999999999877654 77888889999999999987654 455544 443
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.38 E-value=1.3e-05 Score=66.77 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=89.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 271 (436)
+..+...|...++.|+|.+|++.|+......|... .+.+.++.+|+..+++++|+..+++-++++|.+ ..+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34566667777788999999999999999988654 789999999999999999999999999999886 467888
Q ss_pred HHHHHHHHcC--------------CHHHHHHHHHHHHHhCCCCHHH
Q 013800 272 YAKLVWELHR--------------DQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 272 la~~~~~~~~--------------d~~~A~~~~~~al~~~p~~~~~ 303 (436)
.|.+++.... ...+|...|+++++..|+...+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8888877631 1568999999999999987654
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.37 E-value=1e-05 Score=76.87 Aligned_cols=139 Identities=21% Similarity=0.309 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH-cCCHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS-KGDLEGAEEY 345 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~g~~~~A~~~ 345 (436)
.+|..+.......+| .+.|..+|++|++..+-...+|...| .+.+. .++.+.|..+
T Consensus 2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~~~~~~~vy~~~A----------------------~~E~~~~~d~~~A~~I 58 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-IEAARKVFKRARKDKRCTYHVYVAYA----------------------LMEYYCNKDPKRARKI 58 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCS-THHHHHHH----------------------HHHHHTCS-HHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHcCCCCCHHHHHHHH----------------------HHHHHhCCCHHHHHHH
Confidence 467888888888887 99999999999966666788888888 56445 5777779999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|+.+++..|.+...|..+...+...++ .+.|..+|++++..-|... .+|..+..+....|+.+...++++++.++.
T Consensus 59 fe~glk~f~~~~~~~~~Y~~~l~~~~d-~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 59 FERGLKKFPSDPDFWLEYLDFLIKLND-INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998 9999999999998877644 688999999999999999999999999998
Q ss_pred CCChhHH
Q 013800 423 PIRQGAV 429 (436)
Q Consensus 423 p~~~~a~ 429 (436)
|......
T Consensus 138 ~~~~~~~ 144 (280)
T PF05843_consen 138 PEDNSLE 144 (280)
T ss_dssp TTS-HHH
T ss_pred hhhhHHH
Confidence 8744433
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.35 E-value=1.9e-05 Score=65.77 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=88.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~ 404 (436)
...++.|+|.+|++.|+.+....|.. ..+.+.++.+++..++ +++|+..+++-++++|.++ .+++..|.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~-y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD-YEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 67778999999999999999988754 5789999999999999 9999999999999999886 678888988888
Q ss_pred CCC---------------hHHHHHHHHHHHhhCCCChhHHh
Q 013800 405 TEE---------------DEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 405 ~g~---------------~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+.. ..+|...|++++...|+..-+..
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 876 88999999999999999876654
No 199
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00011 Score=65.57 Aligned_cols=181 Identities=17% Similarity=0.191 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013800 211 FDDSAEAEEYYKRMIDEYP------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
.+.+++|.++|.++-.... .-..++...|.++.+.|.-++|- ..+...+.+|... +..
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaa--------------t~YveA~~cykk~--~~~ 90 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAA--------------TTYVEAANCYKKV--DPE 90 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHH--------------HHHHHHHHHhhcc--ChH
Confidence 3578999888887643211 01133334444444444333333 3344445554443 599
Q ss_pred HHHHHHHHHHHhCCCCHHH------HHHHHHHHHHccCchHHHHHHHHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCCC-
Q 013800 285 RALTYFERAALAAPQDSNI------LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ-SKGDLEGAEEYFSRAILANPGD- 356 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~- 356 (436)
+|+.++++++++.-+.... +..+| .+|. .+.++++|+.+|+++-+....+
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~ia----------------------EiyEsdl~d~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIA----------------------EIYESDLQDFEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHH----------------------HHHhhhHHHHHHHHHHHHHHHHHHcchh
Confidence 9999999998875432221 12333 3443 4478999999999987764432
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 357 -----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
-..+...|..-..+++ |.+|+..|++.....-++. ..++.-|.+++...+.-.+...+++..+++|.
T Consensus 149 s~ssANKC~lKvA~yaa~leq-Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQLEQ-YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 2345566666677888 9999999999877655544 33455677787878888888899999999999
Q ss_pred ChhHHh
Q 013800 425 RQGAVT 430 (436)
Q Consensus 425 ~~~a~~ 430 (436)
|.+...
T Consensus 228 F~dsRE 233 (288)
T KOG1586|consen 228 FTDSRE 233 (288)
T ss_pred ccccHH
Confidence 988665
No 200
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.34 E-value=1.8e-05 Score=72.64 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ---DSNILAAYA 308 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la 308 (436)
.++.|.-++..|+|.+|+..|..-++..|+. +.+++.||.+++.+++ |++|...|..+++-.|+ -+++++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD-YEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc-chHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 6777777778888888888888888877764 5677777777777764 77777777777777665 356677777
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
.+..++|+.++|...|+++++..|+...+..
T Consensus 223 ----------------------~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 ----------------------VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred ----------------------HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 6666667777777777777777776655443
No 201
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.31 E-value=5e-05 Score=74.81 Aligned_cols=161 Identities=17% Similarity=0.082 Sum_probs=101.5
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C---
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---------------------D--- 265 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------------~--- 265 (436)
+..+.+.-++.-++|++++|+.+.+|..||.- ...-..+|+++|+++++.... +
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 34667888899999999999999988887752 223456777777777664211 0
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013800 266 -GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 266 -~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
..+...+|.+.+++|+ .++|++.++..++..|. +..++.++..++ ...+.|.++
T Consensus 258 ~~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~L----------------------Lelq~Yad~ 314 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEAL----------------------LELQAYADV 314 (539)
T ss_pred hhhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHH----------------------HhcCCHHHH
Confidence 3355678888888886 89999999999988775 456788888444 445555555
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHhCCCCHHHH
Q 013800 343 EEYFSRAILA-NPGDGEIMSQYAKLVWELHHD---------------HDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 343 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~d---------------~~~A~~~~~~al~~~p~~~~~~ 395 (436)
...+.+-=++ -|+.+...+.-|.+..+...| -..|.+.+.+|++.+|.-+..+
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 5444443222 133333333333322221110 1346678888888887766444
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.24 E-value=1.5e-06 Score=65.39 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DP----GDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+.++.++|.+|..+|++++|+.+|++++.+ .+ ....++.++|.++...++ +++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 345556666666666666666666666543 11 113455566666555553 66666666666554
No 203
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.23 E-value=1.5e-06 Score=65.45 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---P-A---DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---p-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
|+-..++.++|.++..+|+ +++|+.+|++++++. + + -..++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999 999999999999752 2 2 2367899999999999999999999999876
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=6.7e-05 Score=68.03 Aligned_cols=123 Identities=14% Similarity=0.157 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------------- 330 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------- 330 (436)
+.+.++.++...+. |.-.+..+.++++.+ |.++.....++.+....|+.+.|..++++..+.
T Consensus 179 Vmy~~~~~llG~kE-y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKE-YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchh-hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 33444445555543 666666666666655 345555555665555555555555555533222
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.++.-.+++..|...|.+.+..+|.++.+.++.|.|+..+|+ ..+|++.++.++++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-LKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-HHHHHHHHHHHhccCCccc
Confidence 667778899999999999999999999999999999999999 9999999999999998743
No 205
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.21 E-value=3.5e-05 Score=62.44 Aligned_cols=96 Identities=23% Similarity=0.159 Sum_probs=83.1
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHc
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAKLVWELH 280 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~ 280 (436)
|..+...|+.+.|++.|.+++.+-|+.+.+|.+.++.+.-+|+.++|++.+++++++.... -.++...|.+|...+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4466677999999999999999999999999999999999999999999999999986543 346778898877776
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 013800 281 RDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~ 301 (436)
+ -+.|...|+.+.++.....
T Consensus 130 ~-dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 130 N-DDAARADFEAAAQLGSKFA 149 (175)
T ss_pred c-hHHHHHhHHHHHHhCCHHH
Confidence 5 8999999999988875543
No 206
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=6e-06 Score=73.63 Aligned_cols=93 Identities=16% Similarity=0.025 Sum_probs=86.0
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
-|+.++....|..|+..|.++|.++|..+..|.+.+.++++..+++.+.....+++++.|+....++.+|.++....+ |
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~-~ 94 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG-Y 94 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-c
Confidence 355666668899999999999999999999999999999999999999999999999999999999999999999987 9
Q ss_pred HHHHHHHHHHHHhC
Q 013800 284 HRALTYFERAALAA 297 (436)
Q Consensus 284 ~~A~~~~~~al~~~ 297 (436)
++|+.+++++..+.
T Consensus 95 ~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLL 108 (284)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999997664
No 207
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=8.9e-06 Score=72.56 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=85.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
..++...+|..|+.+|.++|.++|..+..|.+.+.+++++.+ ++.+...+++++++.|+....++.+|..+.....+++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~-~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 566677899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 013800 411 DSKSSDQFQQV 421 (436)
Q Consensus 411 A~~~~~~al~l 421 (436)
|+..+.+++.+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999999776
No 208
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=9.7e-05 Score=69.17 Aligned_cols=159 Identities=18% Similarity=0.043 Sum_probs=120.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHH
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA-APQD---SNILAAYACFLW 312 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~ 312 (436)
.-+.++...|++.+|-..+++.+.-.|.+..++..--.+++..|+ ...-...+++++.. +++- ..+.-.++
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip~wn~dlp~~sYv~Gmya---- 182 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIPKWNADLPCYSYVHGMYA---- 182 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc-hhhhhhHHHHhccccCCCCcHHHHHHHHHH----
Confidence 344556677888888888889999999888887777777777775 77777888888776 5554 34444455
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD- 391 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~- 391 (436)
..+...|-|++|.+..++++++++.+..+...++.++...|+ +.++.+.+.+.-..-...
T Consensus 183 ------------------FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr~s~ 243 (491)
T KOG2610|consen 183 ------------------FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWRQSW 243 (491)
T ss_pred ------------------hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchhhhh
Confidence 777788999999999999999999998888889999888888 899988887643221111
Q ss_pred ---HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 392 ---SHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 392 ---~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
..-|+..|.++++-+.++.|+++|.+-+
T Consensus 244 mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 244 MLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 1345667888888899999999887644
No 209
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.13 E-value=0.00025 Score=70.09 Aligned_cols=176 Identities=11% Similarity=0.053 Sum_probs=117.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH--
Q 013800 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD-- 321 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-- 321 (436)
+..+.++-++...+|++++|+.+.+|..+|.-.. ....+|+++|+++++.....-.. .......|..-+..
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA---~Ti~Eae~l~rqAvkAgE~~lg~----s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEEA---STIVEAEELLRQAVKAGEASLGK----SQFLQHHGHFWEAWHR 252 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc---cCHHHHHHHHHHHHHHHHHhhch----hhhhhcccchhhhhhc
Confidence 4456677888899999999999999998884321 23789999999998865321110 00000001000000
Q ss_pred -----HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHH
Q 013800 322 -----KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQA-SPADSH 393 (436)
Q Consensus 322 -----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-~p~~~~ 393 (436)
-.+-+.--..+..+.|+.++|++.++..++..|. +..++.+|..++..++. |.++...+.+.=++ -|....
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhccccCCchHH
Confidence 0000000007788899999999999999998875 46689999999999999 99999999986433 355566
Q ss_pred HHHHHHHHHHH-CCC---------------hHHHHHHHHHHHhhCCCChh
Q 013800 394 VLAAYACFLWE-TEE---------------DEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 394 ~~~~la~~~~~-~g~---------------~~~A~~~~~~al~l~p~~~~ 427 (436)
..+.-|.+..+ .++ ...|++.+++|.+.+|+.+.
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 66655554333 222 23477889999999988653
No 210
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.00029 Score=69.05 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=71.3
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE---------YP---------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~P---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
..|.++|.+.++.|.|..+..+|.++++. .| ...+++++.|..|...|++-.|.++|.+++.
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 46899999999999999999999999961 12 2347899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 013800 261 ADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~ 278 (436)
..-.+|..|.++|.+...
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999998754
No 211
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00079 Score=60.61 Aligned_cols=192 Identities=16% Similarity=0.116 Sum_probs=125.8
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH-H
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGDLYRAEDYYNHATMAD-----PGDGE-S 268 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-~ 268 (436)
|..-+..+....+|++|...+.++++-..++. .++-..|.+......+.++..+|++|..+. |+.+. +
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 33444445555999999999999997554432 345566777778899999999999998863 44333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
+-.-|.+ .+.. ++++|+.+|++++.+-..+.. +.-.++.+- +++.+..++.+|-..
T Consensus 114 leKAak~-lenv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~s-------------------r~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 114 LEKAAKA-LENV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCS-------------------RVLVRLEKFTEAATA 172 (308)
T ss_pred HHHHHHH-hhcC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh-------------------hHhhhhHHhhHHHHH
Confidence 3334444 3333 499999999999876543322 222222111 778888888888777
Q ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 346 FSRAILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA----SPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 346 ~~~al~~------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
+.+-... .+.....+.....++....+ |..|..+++..-++ .+++..++.+|-..| ..|+.++..+++
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D-yv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD-YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH-HHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 7664322 23334445555555666667 99999999987765 355667777776665 677887776654
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.08 E-value=9.1e-06 Score=53.84 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
.++..+|.+|...|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666666666666666666666666666666653
No 213
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.05 E-value=7.4e-06 Score=80.20 Aligned_cols=108 Identities=18% Similarity=0.057 Sum_probs=99.0
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
..++..+..+.|+.|+..|.++|+++|+++..+.+.+.++.+.+++..|+..+.+|++++|....+|+..|.+....++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~- 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE- 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-
Confidence 3455667779999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+.+|...|++...+.|+++.+...+..+.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 99999999999999999999887776543
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.00 E-value=0.0066 Score=58.34 Aligned_cols=184 Identities=20% Similarity=0.044 Sum_probs=94.3
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHc
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE-SWMQYAKLVWELH 280 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~ 280 (436)
-|.+..-.|+-..|.++-.++-++-.. .+.++..-++.-.-.|+++.|..-|+-.+. +|+.-. .+..|-.- .+..
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle-Aqr~ 167 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE-AQRL 167 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH-HHhc
Confidence 344555556666666666655532221 223444445555666666666666654432 222111 11111101 1122
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------------hHHHHcCCHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------------LPIQSKGDLEG 341 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~ 341 (436)
|+.+-|..+-+++-...|.-+-++...-...+..|+++.|+++++..... ..-.-.-+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 34666666666666666666666666666666666666666666643332 01111223445
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
|...-.+++++.|+...+-..-+..++..|+ ..++-.+++.+.+..|.
T Consensus 248 Ar~~A~~a~KL~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 248 ARDDALEANKLAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhcCCC
Confidence 5555555555555555555555555555555 55555555555555443
No 215
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.00 E-value=0.0002 Score=71.47 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=84.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDG-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
..+..+|+...|+.++.+|+...|... ....+||.++..-|- .-.|-.++.+++.+.-..+-.++.+|..+..+.+.+
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~-~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL-HLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh-hccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 334457899999999999999988654 357789999999998 899999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhhCCCChh
Q 013800 410 DDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 410 ~A~~~~~~al~l~p~~~~ 427 (436)
.|++.+++++.+.|+...
T Consensus 694 ~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPE 711 (886)
T ss_pred HHHHHHHHHHhcCCCChh
Confidence 999999999999988665
No 216
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00062 Score=70.58 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=108.7
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
.+.+...+|-.++|+.+|++.-.. -.+-.+|...|.+++|.+..+.--.+ .....|+++|..+...+ |.
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~-Di 874 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARR-DI 874 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhc-cH
Confidence 344556667777777777776442 34556677777777777655432111 12346777776655554 58
Q ss_pred HHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCH
Q 013800 284 HRALTYFERA----------ALAAP----------QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDL 339 (436)
Q Consensus 284 ~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~ 339 (436)
+.|+++|+++ +.-+| .+...|..+|..+...|+.+.|+..|..+-.- ++..-+|+.
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT 954 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence 8888888774 22233 25566777887777788888887777644433 555567777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
++|..+.++ ..|-.+.+.||+.|-..|+ +.+|+..|.+|-
T Consensus 955 ~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~-v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 955 DKAARIAEE-----SGDKAACYHLARMYENDGD-VVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHh-----cccHHHHHHHHHHhhhhHH-HHHHHHHHHHHH
Confidence 777654433 4667788889999988888 899988887764
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.97 E-value=1.9e-05 Score=52.31 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
+.++..+|.++...|+ +++|++.|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~-~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ-PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578889999999999 999999999999999999999988875
No 218
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.0024 Score=66.38 Aligned_cols=217 Identities=19% Similarity=0.220 Sum_probs=144.7
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRM----------IDEYPC----------HPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~P~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
..|.+.+..+...++.+.|+++|+++ +..+|. +...|...|..+...|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 56777777888889999999999874 445553 4456777888889999999999999887
Q ss_pred HHh---------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Q 013800 259 TMA---------------------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA------APQDSNILAAYACFL 311 (436)
Q Consensus 259 l~~---------------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~------~p~~~~~~~~la~~~ 311 (436)
-.. ...+..+.+.+|+.|...+ ++.+|+..|.+|-.. ...+ +..-.|+++.
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g-~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nla 1016 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG-DVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLA 1016 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 442 3456778899999988887 499999998887543 2221 1112233333
Q ss_pred HHccCc--hHHHHHHHHHH---HH--hHHHHcCCHHHHHHHHHHH-----H-----HhCC-CCHHHHHHHHHHHHHhcCC
Q 013800 312 WEMEDD--GEDDKAQEEHI---QV--LPIQSKGDLEGAEEYFSRA-----I-----LANP-GDGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 312 ~~~g~~--~~A~~~~~~~~---~~--~~~~~~g~~~~A~~~~~~a-----l-----~~~p-~~~~~~~~la~~~~~~g~d 373 (436)
...+.. -.|.++|++.- .. .+|.+.|.+.+|++..-+. | .++| .++..+..-+..+....+
T Consensus 1017 l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q- 1095 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ- 1095 (1416)
T ss_pred hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH-
Confidence 333332 33444444322 11 6677777777776654321 2 1244 467777777777777777
Q ss_pred HHHHHHHHHH------HHHh----------------CCCC---------HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 374 HDKALCYFER------AVQA----------------SPAD---------SHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 374 ~~~A~~~~~~------al~~----------------~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
|++|..++-. |+++ .|.. ..++-.+|.+..++|.|..|.+-|.++
T Consensus 1096 yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9988876544 4433 1211 267888999999999999998888765
No 219
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=7.3e-05 Score=67.10 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=90.8
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMID--------EYPCHP----------LLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~P~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
......|+-+++.|+|.+|...|+.|+. ..|..+ ..+.++++|+...|+|-+++++....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 5667789999999999999999999874 245443 4688999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
..|.+..+++..|.+....=+ .++|...|.++++++|.-..+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWN-EAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999888754 899999999999999975443
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.00029 Score=64.04 Aligned_cols=134 Identities=18% Similarity=0.219 Sum_probs=114.0
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--CCHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD----P--GDGESWMQY 272 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~l 272 (436)
..+.+..++.-.++|.-.+..+.+.++.+ |..+.....+|.+.++.|+.+.|..+|+++-+.+ . ....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556677888899999999999999998 6677888999999999999999999999665432 2 234566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+.++.... ++..|...|.+++..+|.++.+.++.+ .++.-.|+...|++.++.++.+
T Consensus 259 a~i~lg~n-n~a~a~r~~~~i~~~D~~~~~a~NnKA----------------------LcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQN-NFAEAHRFFTEILRMDPRNAVANNNKA----------------------LCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheeccc-chHHHHHHHhhccccCCCchhhhchHH----------------------HHHHHHHHHHHHHHHHHHHhcc
Confidence 77777776 599999999999999999999999999 7777889999999999999999
Q ss_pred CCCC
Q 013800 353 NPGD 356 (436)
Q Consensus 353 ~p~~ 356 (436)
.|..
T Consensus 316 ~P~~ 319 (366)
T KOG2796|consen 316 DPRH 319 (366)
T ss_pred CCcc
Confidence 9973
No 221
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00011 Score=65.88 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=80.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA--------NPG----------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.-+++.|+|.+|...|+.|+.. .|. ....+.|+++|+...|+ |-++++.+...|..+|.+.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e-~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE-YYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH-HHHHHHHHHHHHhcCCchH
Confidence 5566677777777777777643 233 34568899999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 393 HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.+++..|.+....-+.++|...|.++++++|....
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999887544
No 222
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.87 E-value=1.6e-05 Score=49.38 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013800 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE 252 (436)
Q Consensus 221 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 252 (436)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67778888888888888888888888877775
No 223
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0037 Score=56.04 Aligned_cols=169 Identities=12% Similarity=0.000 Sum_probs=110.6
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEY-----PC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQY 272 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~-----P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l 272 (436)
|+++-...++..|-..|.++-+.. .+ -+..|...+++|.+ .+.++|+.++++++++.-+-.. .+..+
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i 119 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI 119 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence 334444466666666666665532 11 23455555666554 4999999999999998665433 34478
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.+|...-.|+++|+.+|+++-+....+ .....+...+-.. ..-...++|.+|+..|++...
T Consensus 120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA-----------------~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA-----------------QYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 8887766457999999999998876543 2222222211111 455577899999999999887
Q ss_pred hCCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 352 ANPGDGE-------IMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 352 ~~p~~~~-------~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
..-++.- .++.-|.|++...+ .-.+...+++..+++|...
T Consensus 183 ~s~~n~LLKys~KdyflkAgLChl~~~D-~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 183 SSLDNNLLKYSAKDYFLKAGLCHLCKAD-EVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HhccchHHHhHHHHHHHHHHHHhHhccc-HHHHHHHHHHHHhcCCccc
Confidence 7655432 33445556666566 7788888899999999865
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.82 E-value=2e-05 Score=48.90 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=16.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
|+++|+++|+++.+|+++|.+|...|+ +++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~-~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGD-YEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcC-HHhhc
Confidence 445555555555555555555555555 54443
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.82 E-value=0.015 Score=58.90 Aligned_cols=98 Identities=15% Similarity=0.035 Sum_probs=77.3
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 409 (436)
......|+++...-.|++++--.....+.|...+......|+ .+-|...+..+.++. |..+.++...+.+-...|++.
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~-~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~ 383 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD-VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD 383 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc-hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH
Confidence 444467888888888888887777778888888888888888 888888888877764 566777788888888889999
Q ss_pred HHHHHHHHHHhhCCCChhHH
Q 013800 410 DDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 410 ~A~~~~~~al~l~p~~~~a~ 429 (436)
.|...+.++.+--|.+-.+.
T Consensus 384 ~A~~~lq~i~~e~pg~v~~~ 403 (577)
T KOG1258|consen 384 DAKVILQRIESEYPGLVEVV 403 (577)
T ss_pred HHHHHHHHHHhhCCchhhhH
Confidence 99999998887667765543
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.81 E-value=0.0023 Score=62.34 Aligned_cols=181 Identities=13% Similarity=0.060 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHH-HHhCCCCHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQYAKLVWE---LHRDQHRALTYFERA-ALAAPQDSNI 303 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~d~~~A~~~~~~a-l~~~p~~~~~ 303 (436)
+++..++-..|....+|+.-+...+..-.+ -++.+.+...+|.++.. .| |.++|+..+..+ ....+.+++.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~g-dre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPG-DREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCC-CHHHHHHHHHHHHhccCCCChHH
Confidence 456677777888889999888888877666 55667777888877776 44 689999999884 4455678888
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
+-.+|.++.+.-.. ..+......++|+.+|.++.+++|+ ...-.|++.++...|.++....+.-+-
T Consensus 220 ~gL~GRIyKD~~~~-------------s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 220 LGLLGRIYKDLFLE-------------SNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred HHHHHHHHHHHHHH-------------cCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHH
Confidence 88888666542000 0011233589999999999999965 455566777777777644333222222
Q ss_pred HHHh-----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 384 AVQA-----------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 384 al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.+.+ .-.+-..+..++.+..-.|++++|++.+++++.+.|....
T Consensus 286 ~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 286 GVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 2111 1123456677788888999999999999999998755433
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0014 Score=60.98 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=41.2
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455588888888888888888888888888888888888888887776654
No 228
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.80 E-value=3.6e-05 Score=75.47 Aligned_cols=107 Identities=17% Similarity=0.089 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 316 (436)
..+.-++..+.++.|+..|.+||+++|+.+..+.+.+..+.+.+ ++..|+..+.+|++++|....+++..|
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e-~~~~Al~Da~kaie~dP~~~K~Y~rrg-------- 79 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVE-SFGGALHDALKAIELDPTYIKAYVRRG-------- 79 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeec-hhhhHHHHHHhhhhcCchhhheeeecc--------
Confidence 33444444455555555555555555555555554444444443 255555555555555554444444444
Q ss_pred chHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 317 DGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 317 ~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
.+....+++.+|...|+....+.|+++.+...+..|
T Consensus 80 --------------~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 80 --------------TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred --------------HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 444444555555555555555555544444443333
No 229
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0097 Score=54.31 Aligned_cols=194 Identities=17% Similarity=0.198 Sum_probs=148.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH- 284 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~- 284 (436)
++.+...-..|+.+-..+|.++|.+..+|...-.++.. ..+..+-++++...++-+|++-.+|...-.+....+ ++.
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~ 130 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSF 130 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-Cccc
Confidence 44444667899999999999999999999888887775 456788899999999999999999999887776666 587
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------hHH---HHcC-----CHHHHHHHH
Q 013800 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------LPI---QSKG-----DLEGAEEYF 346 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~---~~~g-----~~~~A~~~~ 346 (436)
.-++..+.++..+..+-.+|...-.++...+.++.-+....+.+.. +.+ ...| ..+.-+.+.
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 8899999999999999999999888888889999888888887776 000 0011 234556788
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH-hc--CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 013800 347 SRAILANPGDGEIMSQYAKLVWE-LH--HDHDKALCYFERAV-QASPADSHVLAAYACFL 402 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~-~g--~d~~~A~~~~~~al-~~~p~~~~~~~~la~~~ 402 (436)
.+.|.+.|++..+|+.|.-++.. .| . +.+-.......+ +..-..+..+..+..+|
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s-~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLSS-DSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCcC-CchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 88999999999999999988876 33 1 234444444444 33344566666666555
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0028 Score=57.16 Aligned_cols=171 Identities=15% Similarity=0.150 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..|..-+.+|...+++++|...+.+|++...++. ..+-..+.+..++.. +.++..+|++|..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k-lsEvvdl~eKAs~----------- 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK-LSEVVDLYEKASE----------- 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH-----------
Confidence 4566667788889999999999999997655442 233444545455554 7788888887764
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~ 380 (436)
.|.+.|..+.|...++++-+ ..+..+.++|+.+|++++.+-..+ .+.+...++++.+... +.+|-..
T Consensus 100 ---lY~E~GspdtAAmaleKAak---~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~Eaa~a 172 (308)
T KOG1585|consen 100 ---LYVECGSPDTAAMALEKAAK---ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FTEAATA 172 (308)
T ss_pred ---HHHHhCCcchHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hhHHHHH
Confidence 45555666666655554432 335678999999999998874432 3556677888888888 9998888
Q ss_pred HHHHHH----h--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 381 FERAVQ----A--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 381 ~~~al~----~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+.+-.. . .++....+.....+++...++..|..+|+..-+++
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 877432 2 23333445555566666779999999998877664
No 231
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00024 Score=66.49 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=88.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
.-|++.++|..|+..|.++|+..-. +...|.|.|.+.+.+|+ |..|+..+.+++.++|.+..+++.=|.+++.+.
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 7788899999999999999998543 35678999999999999 999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCChhHHhhh
Q 013800 407 EDEDDSKSSDQFQQVAPIRQGAVTTA 432 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~p~~~~a~~~a 432 (436)
++++|+...+..+.++..-..+.++.
T Consensus 168 ~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 99999999988888766555555443
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00079 Score=63.26 Aligned_cols=143 Identities=17% Similarity=0.053 Sum_probs=117.8
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCC
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGD---GESWMQYAKLVWELHRD 282 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~d 282 (436)
++...|++.+|-..+++.++..|.+..++..--.+++..|+.+.-...+++++-. +++. ..+.-.++..+.+.|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~- 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI- 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc-
Confidence 3344589999999999999999999988888888999999999999999999877 6665 4555667777778875
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYF 346 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~ 346 (436)
|++|++.-++++++++.+.-+...++.++...++..++.+...+.-.. .++...+.|+.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999999999999999999999999998888888888777632221 5666778888888888
Q ss_pred HHHH
Q 013800 347 SRAI 350 (436)
Q Consensus 347 ~~al 350 (436)
.+-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8754
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.71 E-value=0.0049 Score=62.86 Aligned_cols=163 Identities=16% Similarity=0.057 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGD-GES------WMQYAKLVWE---LHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~~---~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
.+-.+.--.|+-+.+++.+.++.+...-. +.+ |+.....+.. .+.+.+.|.++++...+..|+..-.++.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 33334445688999999999887732211 111 1111111111 1345788999999999999999999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~~A~~~~~ 382 (436)
.| +++...|+.++|++.|++++..... ..-.++.+++++..+++ |++|..++.
T Consensus 273 ~g----------------------R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~A~~~f~ 329 (468)
T PF10300_consen 273 EG----------------------RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEEAAEYFL 329 (468)
T ss_pred HH----------------------HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHHHHHHHH
Confidence 99 8888899999999999988853322 23467889999999999 999999999
Q ss_pred HHHHhCCCCH-HHHHHHHHHHHHCCCh-------HHHHHHHHHHHhhC
Q 013800 383 RAVQASPADS-HVLAAYACFLWETEED-------EDDSKSSDQFQQVA 422 (436)
Q Consensus 383 ~al~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al~l~ 422 (436)
+.++.+.-.. ...+..|.++...|+. ++|.+.++++-.+.
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9998766533 4456668889999999 88888888776654
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.69 E-value=0.009 Score=58.27 Aligned_cols=179 Identities=15% Similarity=0.067 Sum_probs=121.8
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE----YPCHPLLLRNYAQLLQK---KGDLYRAEDYYNHAT-MADPGDGESWM 270 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~~ 270 (436)
+...++=..|....+|+.-+.+.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+++.+-
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 44555556677779999999998887766 45667888899999998 999999999999954 45667899999
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--hHHHHcCCHH
Q 013800 271 QYAKLVWELH--------RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--LPIQSKGDLE 340 (436)
Q Consensus 271 ~la~~~~~~~--------~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~g~~~ 340 (436)
.+|.+|-..- ...++|+..|.++.+++|+ ...-.|++.++...|........+++..-. ..+.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-- 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-- 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc--
Confidence 9999875431 1267999999999999964 344456665555555432222211111100 11111111
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.-.-.+...+-.++.+..-.|+ +++|++++++++.+.|..
T Consensus 299 ----------~~~~~dYWd~ATl~Ea~vL~~d-~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 ----------LEKMQDYWDVATLLEASVLAGD-YEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ----------ccccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCcc
Confidence 1112344555667777788888 999999999999998764
No 235
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.68 E-value=0.0044 Score=60.03 Aligned_cols=149 Identities=9% Similarity=0.096 Sum_probs=110.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGD------------LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.-|++.+..+|.+..+|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+.. +.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence 45788999999999999999887765432 456788999999999999999988888877776 58888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-------------
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN------------- 353 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------- 353 (436)
.+.+++++..+|++...|..+....... ...-.+......|.++|..-
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~-------------------~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~ 145 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSN-------------------FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPD 145 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHH-------------------hccCcHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999999998777544331 11223333444444433320
Q ss_pred -----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 354 -----PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 354 -----p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
..-..++..+...+.+.|- .+.|+..++-.++.+
T Consensus 146 ~~~~e~~~l~v~~r~~~fl~~aG~-~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 146 LPELEEFMLYVFLRLCRFLRQAGY-TERAVALWQALLEFN 184 (321)
T ss_pred hhhHHHHHHHHHHHHHHHHHHCCc-hHHHHHHHHHHHHHH
Confidence 0113456677777888898 999999999998876
No 236
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.66 E-value=0.014 Score=58.28 Aligned_cols=206 Identities=14% Similarity=0.128 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHc-
Q 013800 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD--------------LYRAEDYYNHATMADP-GDGESWMQYAKLVWELH- 280 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~- 280 (436)
-.-.|++++..-+-++++|+..+..+...++ .+++...|++++...- .+...++.++..-....
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 3445778888888888999888877776666 7888999999887533 34444455543221111
Q ss_pred -CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCCHHHHHHH
Q 013800 281 -RDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 281 -~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~ 345 (436)
..++.-..++++++.+...+ .-++.++.++..+......|+.++.++-+. .-|...++..-|...
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrI 423 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRI 423 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHH
Confidence 01566677888888765443 445677778888888888888888766554 556678999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--SPA-DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|+-.++..++.+..-+.....+..+++ -..|..+|++++.. .++ ...+|..+-......|+....+++-++-....
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNd-d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLND-DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCc-chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999 69999999999987 443 34788888999999999999888887766665
Q ss_pred C
Q 013800 423 P 423 (436)
Q Consensus 423 p 423 (436)
|
T Consensus 503 ~ 503 (656)
T KOG1914|consen 503 P 503 (656)
T ss_pred c
Confidence 5
No 237
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.65 E-value=0.0016 Score=68.32 Aligned_cols=133 Identities=14% Similarity=0.040 Sum_probs=109.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
...+++.+|+....+.++..|+...+...-|.++.++|+ .++|..+++..-...+++...+..+-
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le~~~~~~~~D~~tLq~l~-------------- 84 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLEALYGLKGTDDLTLQFLQ-------------- 84 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHhhhccCCCCchHHHHHHH--------------
Confidence 356788999999999999999999999999999999987 99999888888777888877777777
Q ss_pred HHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 323 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.+|.+++++++|..+|++++..+|. .+.+..+=.+|.+.+. |.+-.+.--+..+..|.++...+....
T Consensus 85 --------~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~-yk~qQkaa~~LyK~~pk~~yyfWsV~S 152 (932)
T KOG2053|consen 85 --------NVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS-YKKQQKAALQLYKNFPKRAYYFWSVIS 152 (932)
T ss_pred --------HHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcccchHHHHHH
Confidence 8889999999999999999999999 7888888888888777 766665555556677877755444433
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0044 Score=57.68 Aligned_cols=162 Identities=14% Similarity=0.056 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-NILAAYACFL 311 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 311 (436)
+.-+..+.-....|++.+|...|..++...|++..+...++.+|...+. .+.|...+...-....+.. ..+....
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~-~e~A~~iL~~lP~~~~~~~~~~l~a~i--- 210 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD-VEAAQAILAALPLQAQDKAAHGLQAQI--- 210 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC-hHHHHHHHHhCcccchhhHHHHHHHHH---
Confidence 4456667777889999999999999999999999999999999999975 8888777665322222111 1111111
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA- 390 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~- 390 (436)
.++.+.....+ ...+++.+..+|+|.++.+.+|..+...|+ +++|.+.+-..+..+-.
T Consensus 211 -------------------~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 211 -------------------ELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRGF 269 (304)
T ss_pred -------------------HHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcccc
Confidence 22222222222 234566778899999999999999999999 99999999999987644
Q ss_pred -CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 391 -DSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 391 -~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
+..+...+-.++...|.-+.+...|++-+
T Consensus 270 ~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 270 EDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred cCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 56788888888888887666666666543
No 239
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.63 E-value=0.015 Score=60.77 Aligned_cols=242 Identities=17% Similarity=0.093 Sum_probs=163.5
Q ss_pred CCCChHHHHHhhcC----CCCCCChhhhhhHhhhhhhCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 013800 178 RPVSPPMYLAMGLG----ISVPGFDDAGEVVDLIMPNFD-----DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-- 246 (436)
Q Consensus 178 ~p~~a~~~~~~~~~----~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-- 246 (436)
++..+..|+.++.. -...+.+.+...+|.+|.+.. ++..|+.+|.++.+.. ++.+.+.+|.++..-.
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~ 341 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKE 341 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCcc
Confidence 55566777777754 111134456778888887743 6788999999998875 5667788888888655
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCchHHH
Q 013800 247 -DLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---HRDQHRALTYFERAALAAPQDSNILAAYACFLWEM-EDDGEDD 321 (436)
Q Consensus 247 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~ 321 (436)
++..|.++|..|... .+..+.+.++.+|..- .++...|..+|+++.+.. ++.+...++.++... +..+.+.
T Consensus 342 ~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred ccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHH
Confidence 678999999988654 5677888888776542 246899999999999988 444444444333222 5555555
Q ss_pred HHHHHHHHH---------hHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHHHH
Q 013800 322 KAQEEHIQV---------LPIQSK-----------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL---HHDHDKAL 378 (436)
Q Consensus 322 ~~~~~~~~~---------~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~d~~~A~ 378 (436)
..+...... ..+... .+...+...+.++.. ..+..+...+|.+|+.- ++|+..|.
T Consensus 418 ~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~ 495 (552)
T KOG1550|consen 418 ALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAA 495 (552)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHH
Confidence 444322221 111111 244555555555543 45678888888888765 56799999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHC-C--ChHHHHHHHHHHHhhCCCChhHHh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWET-E--EDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~-g--~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..|.++-... ....+++|..+..- | ....|.++|.++.+..........
T Consensus 496 ~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~~~~ 547 (552)
T KOG1550|consen 496 AQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYLPVK 547 (552)
T ss_pred HHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhhHHH
Confidence 9999998877 78899999887642 1 257899999998887766554433
No 240
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.61 E-value=0.03 Score=53.36 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=138.2
Q ss_pred hhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---c
Q 013800 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---H 280 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~ 280 (436)
....+++..|...+.++.... +......++.+|.. ..+..+|..+|. ......++.+.+.+|.+|..- .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcc
Confidence 345588999999999888733 33677888888874 557889999999 445667888999999888762 3
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 281 RDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|+.+|..+|+++.+..-.. ..+.+.++.++..-. . ......+...|...|.++-... ++.+
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~--------------~~~~~~~~~~A~~~~~~aa~~~--~~~a 189 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-Q--------------ALAVAYDDKKALYLYRKAAELG--NPDA 189 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-h--------------hhcccHHHHhHHHHHHHHHHhc--CHHH
Confidence 37999999999999886544 344667774443321 0 0001113357899999987766 7889
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---------------ChHHHHHHHHHHHhh
Q 013800 360 MSQYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWETE---------------EDEDDSKSSDQFQQV 421 (436)
Q Consensus 360 ~~~la~~~~~~---g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~l 421 (436)
...+|.+|..- ..|+.+|..+|.++-+... ...++.++ ++...| +...|...+.++...
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 99999887542 2348999999999998876 78888888 777666 667777777776665
Q ss_pred C
Q 013800 422 A 422 (436)
Q Consensus 422 ~ 422 (436)
.
T Consensus 267 ~ 267 (292)
T COG0790 267 G 267 (292)
T ss_pred C
Confidence 4
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.61 E-value=0.00012 Score=45.19 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555553
No 242
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.59 E-value=0.00019 Score=44.25 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
.+++.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.54 E-value=0.00017 Score=44.56 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.+|+++|.++..+|+ +++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD-YEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCC-chHHHHHHHHHHHHCcC
Confidence 456666666666666 66666666666666665
No 244
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00055 Score=64.19 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=90.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
+..+..-|+-+++..+|..|+..|.+.|+..-.+ +..|.+.|-+.+..|+|..|+....+++.++|.+..+++.=|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3567778999999999999999999999976443 367889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 274 KLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
.|++.+.+ +++|..+++..+.++.+.
T Consensus 161 kc~~eLe~-~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 161 KCLLELER-FAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHH-HHHHHHHHhhhhhhhHHH
Confidence 99999987 999999999988776543
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.51 E-value=0.00028 Score=43.45 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.+|+.+|.+++.+|+ +++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN-YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCcCC
Confidence 456666666666666 666666666666666653
No 246
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0042 Score=56.63 Aligned_cols=176 Identities=13% Similarity=0.163 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
.+|.++..+|+..+..+... ..|+.....+|.++|.+-.+|.-.-.++..++.+..+-+.++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 67888888888877776544 4677788889999999999999988899998888999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCch-HHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDG-EDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
..++-+|.+-.+|...-.+....|+.. +-+......+.. ++...-+.|+.-+.+..+.|+.+-.+-.
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 999999999999998885555555443 333333332222 3444444455555555555554444444
Q ss_pred HHHHHHHHHHHh-cC-C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 359 IMSQYAKLVWEL-HH-D---HDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 359 ~~~~la~~~~~~-g~-d---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
+|+..-.+.... |- + .+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus 183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 444333222221 11 0 1223334444455555555555555555443
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.44 E-value=0.0049 Score=52.21 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
+...++..+...+ ++++|+..+++++..+|.+..++..+. .++...|+..+|+..|+
T Consensus 64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm----------------------~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLM----------------------RALAAQGRRAEALRVYE 120 (146)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHH----------------------HHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHH----------------------HHHHHCcCHHHHHHHHH
Confidence 4455666666665 488999999999999998888888888 55666666666666665
Q ss_pred HHH
Q 013800 348 RAI 350 (436)
Q Consensus 348 ~al 350 (436)
+..
T Consensus 121 ~~~ 123 (146)
T PF03704_consen 121 RYR 123 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.44 E-value=0.1 Score=49.40 Aligned_cols=209 Identities=13% Similarity=0.061 Sum_probs=114.6
Q ss_pred hCCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCCC----------H
Q 013800 210 NFDDSAEAEEYYKRMIDEY----PCH----PLLLRNYAQLLQKKG-DLYRAEDYYNHATMA----DPGD----------G 266 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~----P~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~~----------~ 266 (436)
+.|+++.|..++.++-... |+. ...+++.|......+ ++++|..++++++++ .... .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4577777777777766543 222 245666677777777 777777777777766 1111 2
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------
Q 013800 267 ESWMQYAKLVWELHR--DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------- 330 (436)
Q Consensus 267 ~~~~~la~~~~~~~~--d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------- 330 (436)
.++..++.++...+. .+++|...++.+-.-.|+.+..+...-.++...++.+.+.+.+.+.+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 345566666655432 1344555555555556776666655555555566666666666666554
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH---HHHhc-CCHHHH--HHHHHHHHH----h--CCCCH----
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA--NPGDGEIMSQYAKL---VWELH-HDHDKA--LCYFERAVQ----A--SPADS---- 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~---~~~~g-~d~~~A--~~~~~~al~----~--~p~~~---- 392 (436)
.-.........|..++...+.. .|.... |.....+ +...+ .+.... ++.+...+. . .|-..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1011223345566666666543 233221 3222222 22211 111122 333322222 1 12222
Q ss_pred ---HHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 393 ---HVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 393 ---~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
..+++.|...++.++|++|...|+-++
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 456778888999999999999999776
No 249
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.0016 Score=63.98 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=108.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA-ALAAPQ--------DSNILAA 306 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a-l~~~p~--------~~~~~~~ 306 (436)
......|..+.+...+..-.+.++.+..+.+.++...+..++..|+ +.+|.+.+... +...|. .-..|++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn-~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN-HPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc-hHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 3344455666666666666677777777777777777777777764 88887766543 222232 2234567
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA---------N---------PGDGEIMSQYAKLVW 368 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~~ 368 (436)
+| -++++.|.|.-+..+|.+|++. . ....+++++.|..+.
T Consensus 289 lG----------------------cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L 346 (696)
T KOG2471|consen 289 LG----------------------CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL 346 (696)
T ss_pred cc----------------------eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH
Confidence 77 7888889999999999999861 1 134678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
..|+ .-.|.++|.+++.....++..|..+|.+.+.
T Consensus 347 h~gr-Pl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 347 HSGR-PLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcCC-cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999988553
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.39 E-value=0.04 Score=56.01 Aligned_cols=122 Identities=10% Similarity=0.010 Sum_probs=98.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD-PGDGESWMQYAKLVW 277 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 277 (436)
..|...-......|+++...-.|++++---....+.|..++......|+.+-|...+.++.+.. |..+.+....+.+--
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 4566666677888999999999999998887888999999999999999999999999999875 556666666665544
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
.. ++++.|...+++...-.|+...+-...+.+....|+.+.+.
T Consensus 378 ~~-~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 378 SN-GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hh-ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 44 56999999999999988998888888885555555444443
No 251
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.37 E-value=0.023 Score=55.06 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=115.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWELHR-----------DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
.-|++.+..+|.+...|..+....-.... -.+.-+.+|++|++.+|++...+..+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l------------- 72 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYL------------- 72 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH-------------
Confidence 45788899999999999999876544321 035678899999999999999998888
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCC----C----
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE---LHHDHDKALCYFERAVQASP----A---- 390 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~d~~~A~~~~~~al~~~p----~---- 390 (436)
.+..+.-+.++..+.+++++..+|++..+|..+-..... .-. +......|.+++..-. .
T Consensus 73 ---------~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~-v~~~~~~y~~~l~~L~~~~~~~~~~ 142 (321)
T PF08424_consen 73 ---------EEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT-VSDVRDVYEKCLRALSRRRSGRMTS 142 (321)
T ss_pred ---------HHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHhhcccccc
Confidence 666777888899999999999999999988766555443 123 6677777877775311 0
Q ss_pred ----------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 391 ----------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 391 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
...++..+..++.+.|-.+.|+..++-.++++
T Consensus 143 ~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 143 HPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 11566778888999999999999999999986
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.33 E-value=0.018 Score=58.79 Aligned_cols=161 Identities=16% Similarity=0.066 Sum_probs=114.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCC-HHH-----HHHHHH-HHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCH-PLL-----LRNYAQ-LLQ----KKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~-~~~-----~~~la~-~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
+..=.||-+.+++.+.++.+..-=. +-+ .+.... .+. .....+.|.+.+....+..|+....++..|++
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL 276 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3444589999999999988732111 111 111111 111 24567889999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ .++|++.|++++.....-.... ..++++.+ +++.-+.+|++|..+|.+.++.+.-
T Consensus 277 ~~~~g~-~~~Ai~~~~~a~~~q~~~~Ql~---~l~~~El~---------------w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 277 ERLKGN-LEEAIESFERAIESQSEWKQLH---HLCYFELA---------------WCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHhcC-HHHHHHHHHHhccchhhHHhHH---HHHHHHHH---------------HHHHHHchHHHHHHHHHHHHhcccc
Confidence 888875 9999999999985433322211 12233333 8899999999999999999987654
Q ss_pred C-HHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHh
Q 013800 356 D-GEIMSQYAKLVWELHHDH-------DKALCYFERAVQA 387 (436)
Q Consensus 356 ~-~~~~~~la~~~~~~g~d~-------~~A~~~~~~al~~ 387 (436)
. .-..+..|.++...++ . ++|.++|.++-..
T Consensus 338 Ska~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHHH
Confidence 3 4455667778888888 7 8888888887544
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.31 E-value=0.0083 Score=50.80 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=67.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 333 IQSKGDLEGAEEYFSRAILANPG----------------------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~----------------------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
....++.+.++..+++++.+... ...++..++..+...|+ +++|+..+++++..+|.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~l~~dP~ 94 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGD-YEEALRLLQRALALDPY 94 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCC
Confidence 34556777777777777766321 12456677777888999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+..++..+..+|...|+..+|++.|++....
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887553
No 254
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.25 E-value=0.086 Score=50.18 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH----cCC
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGD-GESWMQYAKLVWEL----HRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~----~~d 282 (436)
.+..+|..+|+.+.+ ..++.+.+.+|.+|.. ..++.+|..+|.++.+..-.. ....+.++.++..- +-.
T Consensus 91 ~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 91 RDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred ccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 558899999995544 4577888999999987 559999999999999886554 45577777776552 222
Q ss_pred H--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 283 Q--HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 283 ~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
+ ..|+..|.++.... ++.+.+.+|.++..- .-...++.+|..+|.++-+... ...+
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G------------------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG------------------LGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC------------------CCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 3 37999999988876 778888888433221 1124589999999999998876 8888
Q ss_pred HHHHHHHHHhcC--------------CHHHHHHHHHHHHHhCCC
Q 013800 361 SQYAKLVWELHH--------------DHDKALCYFERAVQASPA 390 (436)
Q Consensus 361 ~~la~~~~~~g~--------------d~~~A~~~~~~al~~~p~ 390 (436)
+.++ +++..|. +...|...+.++....+.
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 8888 6666552 256666666666555544
No 255
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.24 E-value=0.014 Score=57.38 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=108.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHh---CC
Q 013800 223 RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF-ERAALA---AP 298 (436)
Q Consensus 223 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~-~~al~~---~p 298 (436)
..+..+|-+.+.+..++.++..+|+.+.|.+.+++|+-.-.. ++... +....... .-..++ .+
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~----------~~~~~---F~~~~~~~~~g~~rL~~~~~ 97 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER----------AFHPS---FSPFRSNLTSGNCRLDYRRP 97 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------HHHHH---hhhhhcccccCccccCCccc
Confidence 345678888999999999999999999999999888643111 10000 00000000 000111 13
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHH
Q 013800 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHDHDKA 377 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d~~~A 377 (436)
.|...+..+-... ..+.+.|-+..|.++.+-.+.++|. |+-........|.-..++|+=-
T Consensus 98 eNR~fflal~r~i-------------------~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~L 158 (360)
T PF04910_consen 98 ENRQFFLALFRYI-------------------QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWL 158 (360)
T ss_pred cchHHHHHHHHHH-------------------HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHH
Confidence 3444333333222 6677899999999999999999998 7765555554444333337777
Q ss_pred HHHHHHHHHhCC-C----CHHHHHHHHHHHHHCCCh---------------HHHHHHHHHHHhhCCCCh
Q 013800 378 LCYFERAVQASP-A----DSHVLAAYACFLWETEED---------------EDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 378 ~~~~~~al~~~p-~----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~l~p~~~ 426 (436)
++.++....... . -+...+..+.+++.+++. ++|...+.+|+...|..-
T Consensus 159 i~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 159 IDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 777776554211 1 234667778888888888 889999999988776543
No 256
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.00025 Score=66.75 Aligned_cols=92 Identities=15% Similarity=0.028 Sum_probs=52.5
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
+.-.+..|.+++|++.|..+|.++|..+.++...+.+++.+++...|+..+..+++++|+...-+...+.....++. |.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~-~e 199 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN-WE 199 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc-hH
Confidence 33444556666666666666666666666666666666666666666666666666666655555555544444442 55
Q ss_pred HHHHHHHHHHHhC
Q 013800 285 RALTYFERAALAA 297 (436)
Q Consensus 285 ~A~~~~~~al~~~ 297 (436)
+|..++..+.+++
T Consensus 200 ~aa~dl~~a~kld 212 (377)
T KOG1308|consen 200 EAAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHHhcc
Confidence 5555555555443
No 257
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.22 E-value=0.042 Score=57.43 Aligned_cols=183 Identities=17% Similarity=0.124 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHc
Q 013800 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-----KGDLYRAEDYYNHATM-----ADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~ 280 (436)
.++...|..+|+.+.+. .+..+...+|.+|.. ..+.+.|+.+|+.+.+ ..-..+.+.+.+|.+|....
T Consensus 225 ~~~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 225 SGELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred chhhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 34567899999988877 467778888888874 4789999999999977 11225667888998887732
Q ss_pred ---C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 281 ---R-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 281 ---~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
. |+..|+.+|.++.... ++.+.+.+|.++... . .-.++..|.++|..|... .+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g-----------------~--~~~d~~~A~~yy~~Aa~~--G~ 359 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG-----------------T--KERDYRRAFEYYSLAAKA--GH 359 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC-----------------C--ccccHHHHHHHHHHHHHc--CC
Confidence 2 5788999999998775 455667777433221 1 124678999999988764 46
Q ss_pred HHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHh
Q 013800 357 GEIMSQYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWET-EEDEDDSKSSDQFQQ 420 (436)
Q Consensus 357 ~~~~~~la~~~~~~---g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 420 (436)
..+.+.++.++..- ..+...|..++.++.+.. ++.+.+.++.++..- ++++.+...+....+
T Consensus 360 ~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 360 ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 78888888887542 234889999999998887 345556666554433 666666655544443
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.20 E-value=0.094 Score=51.17 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
...|...+.+....|. ++.|...+.++....+. .+.+.+..+.++|..|+..+|+..++..+... ....... .
T Consensus 146 ~~~~l~~a~~aRk~g~-~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~-~ 222 (352)
T PF02259_consen 146 AETWLKFAKLARKAGN-FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDS-I 222 (352)
T ss_pred HHHHHHHHHHHHHCCC-cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhcccc-c
Confidence 4556666666666654 77777777777765522 45666777777777777777776666555410 0000000 0
Q ss_pred HHHHHHHH--------------HHhCCCCHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 342 AEEYFSRA--------------ILANPGDGEIMSQYAKLVWEL------HHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 342 A~~~~~~a--------------l~~~p~~~~~~~~la~~~~~~------g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
....+... .........++..+|...... +. .++++..|.++++.+|....+|+.+|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES-SDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 00000000 000011245677777777777 67 8999999999999999999999999988
Q ss_pred HHHCCCh-----------------HHHHHHHHHHHhhCCCCh
Q 013800 402 LWETEED-----------------EDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 402 ~~~~g~~-----------------~~A~~~~~~al~l~p~~~ 426 (436)
+...-+. ..|+..|-+++.+.+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~ 343 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYV 343 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCch
Confidence 6544211 348888888888887743
No 259
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.28 Score=48.78 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH
Q 013800 235 LRNYAQLLQKKG-DLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 235 ~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~ 266 (436)
+-.++.+|.... .+..|...+++++++....+
T Consensus 91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 334444444433 44445555555555544433
No 260
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.20 E-value=0.031 Score=54.63 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=102.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP----GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-D-- 300 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-~-- 300 (436)
.......|...+.+..+.|+++.|...+.++...++ ..+.+.+..+.+++..|+ ..+|+..++..+..... .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhccc
Confidence 344567888999999999999999999998887652 257788888889888875 89999998888872211 1
Q ss_pred ------------------------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH------cCCHHHHHHHHHHHH
Q 013800 301 ------------------------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS------KGDLEGAEEYFSRAI 350 (436)
Q Consensus 301 ------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~g~~~~A~~~~~~al 350 (436)
.......+.++...| ..... .+..++++..|+.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a---------------~w~~~~~~~~~~~~~~~~~~~~~~a~ 285 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLA---------------KWLDELYSKLSSESSDEILKYYKEAT 285 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHH---------------HHHHhhccccccccHHHHHHHHHHHH
Confidence 000111222222222 22233 488999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCC----------------HHHHHHHHHHHHHhCCC
Q 013800 351 LANPGDGEIMSQYAKLVWELHHD----------------HDKALCYFERAVQASPA 390 (436)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~~g~d----------------~~~A~~~~~~al~~~p~ 390 (436)
+++|....+|+.+|..+...-.. ...|+..|-+++...+.
T Consensus 286 ~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 286 KLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999887554220 13466777777777766
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.048 Score=47.83 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=67.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
..+...+++++|+..++.++....+. .-+-.+||.++.++|. +++|+..+....... -....-...|.++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKEES-WAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCc
Confidence 67778888999998888888654432 3456788889999988 888888876543211 112345667889999999
Q ss_pred hHHHHHHHHHHHhhCC
Q 013800 408 DEDDSKSSDQFQQVAP 423 (436)
Q Consensus 408 ~~~A~~~~~~al~l~p 423 (436)
.++|+..|+++++..+
T Consensus 175 k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 175 KQEARAAYEKALESDA 190 (207)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999999988863
No 262
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.12 E-value=0.00047 Score=64.95 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEME 315 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 315 (436)
...+.-.+..|.+++|++.|.++|+++|....++...+.++.++++ +..|+..|..++.++|+...-+-..+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k-p~~airD~d~A~ein~Dsa~~ykfrg------- 189 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK-PNAAIRDCDFAIEINPDSAKGYKFRG------- 189 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccC-CchhhhhhhhhhccCcccccccchhh-------
Confidence 3455556677888888888888888888888888888888888876 88888888888888888777776666
Q ss_pred CchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 316 DDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.....+|+|++|...+..+.+++-+ ..+--.+-.+.-..+. .++-...++++.
T Consensus 190 ---------------~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~k-i~e~~~k~er~~ 242 (377)
T KOG1308|consen 190 ---------------YAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGK-IEEHRRKYERAR 242 (377)
T ss_pred ---------------HHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhh-hhhchhHHHHHH
Confidence 6666778888888888888777644 2222223333333333 344444444443
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.05 E-value=0.037 Score=47.21 Aligned_cols=82 Identities=18% Similarity=0.040 Sum_probs=71.2
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
++.+.+..+-...++.+++..++...--+.|+.+.+-..-|.++...|++.+|+..++.+....|..+.+--.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555556667778999999999999999999999999999999999999999999999999999999888889988877
Q ss_pred Hc
Q 013800 279 LH 280 (436)
Q Consensus 279 ~~ 280 (436)
++
T Consensus 91 ~~ 92 (160)
T PF09613_consen 91 LG 92 (160)
T ss_pred cC
Confidence 75
No 264
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.98 E-value=0.0031 Score=63.37 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSN-ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
.++|-+||...|+...|++|+..|+...|.... .+.+++ .+..+.|-.-.|-..+.+
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la----------------------~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLA----------------------NLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHH----------------------HHHHHhhhhccHHHHHHH
Confidence 455556666656667777777777766665433 245566 444445555566666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
++.++...+-.++.+|.++..+.+ .+.|++.|+.|+.++|+++.+-..|-
T Consensus 668 ~l~~~~sepl~~~~~g~~~l~l~~-i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 668 ALAINSSEPLTFLSLGNAYLALKN-ISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHhhcccCchHHHhcchhHHHHhh-hHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 666666666666666666666666 66777777777766666665444433
No 265
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.98 E-value=0.16 Score=54.01 Aligned_cols=194 Identities=16% Similarity=0.135 Sum_probs=114.9
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPC---------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESW 269 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 269 (436)
.+.......++.+|..+..++...-+. .+......|.+....|++++|+++.+.++..-|.+ ..+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 344566778888888888877665433 12445566778888999999999999999887765 3455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHH--HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH-
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQD----SNIL--AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA- 342 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~----~~~~--~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A- 342 (436)
..+|.+....| ++++|..+.+.+.++.... -.+| ...+ .++..+|+...|
T Consensus 501 sv~~~a~~~~G-~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s----------------------~il~~qGq~~~a~ 557 (894)
T COG2909 501 SVLGEAAHIRG-ELTQALALMQQAEQMARQHDVYHLALWSLLQQS----------------------EILEAQGQVARAE 557 (894)
T ss_pred hhhhHHHHHhc-hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH----------------------HHHHHhhHHHHHH
Confidence 66777766665 5999999998888874332 2222 2223 455555632222
Q ss_pred -HHHHHHH----HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCH--H-HHHHHHHHHHHCCChHH
Q 013800 343 -EEYFSRA----ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS----PADS--H-VLAAYACFLWETEEDED 410 (436)
Q Consensus 343 -~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~----p~~~--~-~~~~la~~~~~~g~~~~ 410 (436)
...|... +...|-........+.+++..-+ ++.+.....+.+++. |... . ++..++.+++..|+.++
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH
Confidence 2222221 12233333344444444444444 555555555554432 2221 1 22467777777788877
Q ss_pred HHHHHHHHHhh
Q 013800 411 DSKSSDQFQQV 421 (436)
Q Consensus 411 A~~~~~~al~l 421 (436)
|...+.+...+
T Consensus 637 A~~~l~~~~~l 647 (894)
T COG2909 637 ALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHHH
Confidence 77777776655
No 266
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.95 E-value=0.12 Score=52.01 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Q 013800 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRD--------------QHRALTYFERAALAAP-QDSNILAAYACFLWEME 315 (436)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 315 (436)
-.-.|++++..-+-.+++|+..+..+...+ + .+++..+|++++..-- .+...++.++...-..-
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s-~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~ 342 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEIS-DLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRY 342 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhh-HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhc
Confidence 344577888888888999998886655543 3 4789999999987543 35555566665444333
Q ss_pred C---chHHHHHHHHHHHH-------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 013800 316 D---DGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379 (436)
Q Consensus 316 ~---~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~ 379 (436)
+ .+.....+++.+.. ..-.+..-...|...|.+|-+.--.-..++..-|.+-+...+|..-|..
T Consensus 343 ~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~Afr 422 (656)
T KOG1914|consen 343 DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFR 422 (656)
T ss_pred ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHH
Confidence 3 45555556555554 2222344466777788877665433335555555554444445999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 380 YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 380 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.|+-.+...++.+.....+...+..+++...|..+|++++..
T Consensus 423 IFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 423 IFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999876
No 267
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.95 E-value=0.47 Score=46.91 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=41.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 367 ~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
++..|+ |.++.-+-.-..++.| .+.++..+|.++....+|++|..++..
T Consensus 472 Lysqge-y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGE-YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhccc-HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 466777 8888888777888899 699999999999999999999877653
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.94 E-value=0.0018 Score=39.83 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555554
No 269
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.92 E-value=0.015 Score=57.67 Aligned_cols=94 Identities=17% Similarity=0.284 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
..-..+|+.++...+.+...|..+.....+.+.+.+--..|.+++..+|+++..|..-|.-.+..+.+.+.|..+|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 45567788888888888888888888888888888888888888888888888888888888877766888888888888
Q ss_pred HhCCCCHHHHHHHH
Q 013800 295 LAAPQDSNILAAYA 308 (436)
Q Consensus 295 ~~~p~~~~~~~~la 308 (436)
+.+|+.+..|..+-
T Consensus 168 R~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYF 181 (568)
T ss_pred hcCCCChHHHHHHH
Confidence 88888888875443
No 270
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.23 Score=49.34 Aligned_cols=192 Identities=15% Similarity=0.081 Sum_probs=131.0
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH--HHH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDE---YPC-------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGE--SWM 270 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~---~P~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~--~~~ 270 (436)
+..+-.-.|++.+|++....+.+. .|. .+.+++.+|......+.++.|...|..|.+.... +.. .-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344566789999999888877663 454 3466778888888899999999999999987554 333 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDS---NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
++|.+|...++ +..+|+-.-.+.|.+. ......+.+++..| ...+.++++.+|...+.
T Consensus 409 nlAi~YL~~~~----~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~g---------------lfaf~qn~lnEaK~~l~ 469 (629)
T KOG2300|consen 409 NLAISYLRIGD----AEDLYKALDLIGPLNTNSLSSQRLEASILYVYG---------------LFAFKQNDLNEAKRFLR 469 (629)
T ss_pred hHHHHHHHhcc----HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH---------------HHHHHhccHHHHHHHHH
Confidence 67877777543 4445555445566532 22233344444433 77788999999999999
Q ss_pred HHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHH---HHHHHHHHCCC--hHHHHH
Q 013800 348 RAILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PADSHVLA---AYACFLWETEE--DEDDSK 413 (436)
Q Consensus 348 ~al~~~p~------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---p~~~~~~~---~la~~~~~~g~--~~~A~~ 413 (436)
+.+++... ..-.+..|+.+..-.|+ ..++....+-++++. |+.+..++ .+-.++...|+ .+++.+
T Consensus 470 e~Lkmanaed~~rL~a~~LvLLs~v~lslgn-~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e 548 (629)
T KOG2300|consen 470 ETLKMANAEDLNRLTACSLVLLSHVFLSLGN-TVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENE 548 (629)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHhcc-hHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 99988622 13456678888899999 999999999888765 55553333 34456777777 444444
Q ss_pred HH
Q 013800 414 SS 415 (436)
Q Consensus 414 ~~ 415 (436)
.+
T Consensus 549 ~~ 550 (629)
T KOG2300|consen 549 AF 550 (629)
T ss_pred HH
Confidence 44
No 271
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.87 E-value=0.14 Score=50.48 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH--HHHH------HH-----------
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK--AQEE------HI----------- 328 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~------~~----------- 328 (436)
.+..-|.-+|+.|+.-++|+..++.+++..+.+.......-.+... .+.+|+. .+.+ .+
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq--~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQ--AYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 3444566677777666788888888888888776433211100000 0001100 0000 00
Q ss_pred ----HH-----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 329 ----QV-----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 329 ----~~-----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
.. ..++.+|+|.++.-+-.-..+++| .+.++..+|.+++...+ |++|..++..
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-Y~eA~~~l~~ 520 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-YQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-HHHHHHHHHh
Confidence 00 667789999999999999999999 79999999999999999 9999999875
No 272
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.83 E-value=0.18 Score=49.65 Aligned_cols=201 Identities=12% Similarity=0.147 Sum_probs=141.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 013800 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA- 297 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~- 297 (436)
-.+++++...|-.+++|+.....+...++-+.|+....+++...|. ....++.++ .+.+|-+....+|+++++.-
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~y-el~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYY-ELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHH-hhcccHHHHhhhHHHHHHHHH
Confidence 3568888888888999999999999999999999999998888777 444555443 33344555566666665421
Q ss_pred -----------------CC-CH-----------HHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHH
Q 013800 298 -----------------PQ-DS-----------NILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQS 335 (436)
Q Consensus 298 -----------------p~-~~-----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~ 335 (436)
|. .. -+|..+.+...+......|+.++-++-+. .-+..
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Confidence 10 01 12223444444555566666666655443 45667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~ 413 (436)
.|++.-|-..|+-.+...|+++...+..-..+...++ -..|..+|+++++.-.+. ..+|..+......-|+...+..
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind-e~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND-EENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc-HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 8899999999999999999988877777778888888 788999999887654433 4667777777777788877777
Q ss_pred HHHHHHhhCCC
Q 013800 414 SSDQFQQVAPI 424 (436)
Q Consensus 414 ~~~~al~l~p~ 424 (436)
.-++..++.|.
T Consensus 524 Le~rf~e~~pQ 534 (660)
T COG5107 524 LEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHcCc
Confidence 76766666554
No 273
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.028 Score=55.86 Aligned_cols=97 Identities=16% Similarity=0.274 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
...-...|+.|+...+.|...|..+. ....+.+.+.+--..|.+++..+|+++++|..
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi----------------------~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~ 144 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYI----------------------AFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIY 144 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHH----------------------HHHHHhcchhHHHHHHHHHHHhCCCCchhHHh
Confidence 45667889999999999999999988 55556666889999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
-|.-.+..+.+.+.|..+|.++|..+|+++..|..+-..
T Consensus 145 aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 145 AAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 999999988879999999999999999999877655444
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.77 E-value=0.0029 Score=38.86 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
+|+.+|.++..+|+ +++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~-~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGD-YEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Confidence 45555555555555 5555555555555555
No 275
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.46 Score=48.02 Aligned_cols=209 Identities=16% Similarity=0.106 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DGESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
....+.+.......|+.+...+..+..+...|+.+.|+..+...+...-. ..-.++.+|.++..+.+ |.+|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~-~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQ-YSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHH
Confidence 45566666777789999999999999999999988899999888871111 12345667777777765 9999999988
Q ss_pred HHHhCCCCHHHHHHHH-H--------HHHHccCchHHHHHHHHHHHH------------------hHHHHcC--------
Q 013800 293 AALAAPQDSNILAAYA-C--------FLWEMEDDGEDDKAQEEHIQV------------------LPIQSKG-------- 337 (436)
Q Consensus 293 al~~~p~~~~~~~~la-~--------~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g-------- 337 (436)
..+...-..-.+..++ - +....|+.+.+....+..... .-+...+
T Consensus 329 L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~l 408 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILL 408 (546)
T ss_pred HHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccc
Confidence 8877654444443333 1 222233444444433311111 1111111
Q ss_pred -----------------CHHHHHHHHHHHHHh----CCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC--
Q 013800 338 -----------------DLEGAEEYFSRAILA----NPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQA---SPA-- 390 (436)
Q Consensus 338 -----------------~~~~A~~~~~~al~~----~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~---~p~-- 390 (436)
...+.+ .++..++. ++++ .-.++.+|.++..+|+ ...|..+|...++. ...
T Consensus 409 a~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~d~ 486 (546)
T KOG3783|consen 409 ASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTEDL 486 (546)
T ss_pred cchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhcccc
Confidence 011111 11111111 1121 2346778999999998 89999999998843 112
Q ss_pred --CHHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhCCCCh
Q 013800 391 --DSHVLAAYACFLWETEE-DEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 391 --~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~p~~~ 426 (436)
.|.+++.+|.+++.+|. ..++.+++.+|.+...++.
T Consensus 487 w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 487 WAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred ccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 24789999999999999 9999999999998765543
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.12 Score=45.34 Aligned_cols=116 Identities=9% Similarity=0.012 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHH
Q 013800 251 AEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 251 A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
.....++....++... .+...+|..+.+.++ +++|+..++.++....+. .-+-..++
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~-~d~A~aqL~~~l~~t~De~lk~l~~lRLA---------------- 133 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANN-LDKAEAQLKQALAQTKDENLKALAALRLA---------------- 133 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccchhHHHHHHHHHHHH----------------
Confidence 3334444444454432 234566777777764 888888888888654442 22335566
Q ss_pred HHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 325 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
++..++|.+++|+..+.....-.- .+......|.++...|+ -++|+..|+++++..++.
T Consensus 134 ------rvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~-k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 134 ------RVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD-KQEARAAYEKALESDASP 192 (207)
T ss_pred ------HHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc-hHHHHHHHHHHHHccCCh
Confidence 777788888888877655432111 13345667888888888 889999999998887553
No 277
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.2 Score=54.02 Aligned_cols=201 Identities=14% Similarity=0.073 Sum_probs=134.9
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD--PG-DGESWMQY 272 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l 272 (436)
+.+..|..+|....+.|...+|++.|-++ +++..|.....+..+.|.|++-+.++..+-+.. |. +.+..+.+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 44578999999999999999999988776 778888888899999999999999888876643 22 22333333
Q ss_pred HHH------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 273 AKL------------------------VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 273 a~~------------------------~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
|.. ++..+. |+.|.-+| .+..-|..++..+..+|.++.|....+++-
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~-y~aAkl~y--------~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKM-YEAAKLLY--------SNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhh-hHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 222 222221 33333332 233456678888888888888877766321
Q ss_pred HH-------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013800 329 QV-------------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 329 ~~-------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
.. ..|...|-+++-+..++.++-+...+--.+..||.+|.+-
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-
Confidence 11 7788889999999999999988887778888888877665
Q ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHH
Q 013800 372 HDHDKALCYFERAVQA--------SPADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 412 (436)
+ +++-.+.++-.... .-+....|..+.-+|.+-..|+.|.
T Consensus 1327 k-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 K-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred C-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3 45555554433221 1122356666666666666666653
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.62 E-value=0.022 Score=43.97 Aligned_cols=77 Identities=12% Similarity=-0.028 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
.+..+++.++.+|++..+.+.+|..+...|+ +++|++.+-.+++.+++. ..+...+-.++..+|..+.....|++-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~-~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGD-YEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3567888999999999999999999999999 999999999999988765 5777888888888888776666666644
No 279
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.61 E-value=0.027 Score=52.57 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=45.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
..+.|+.++|...|+.|+++.|.+++++..+|.+.... ++.-+|-.+|-+|+.++|.+.+++.+.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 34567777777777777777777777777777554443 4577777777777777777777766555
No 280
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.54 E-value=0.05 Score=43.24 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
++++|.++..+.|..+..++.+|.-+.-... |+++..-.+++|.+
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~-Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKY-YKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence 5666677777777666666666655544444 66666666666543
No 281
>PRK10941 hypothetical protein; Provisional
Probab=96.50 E-value=0.037 Score=51.90 Aligned_cols=70 Identities=16% Similarity=0.079 Sum_probs=63.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|. +..|...++..++..|+++.+.....++
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c-~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC-EHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 888999999999999999999999999999999999999999 9999999999999999988765544433
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.50 E-value=0.21 Score=42.61 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+.+++...+..+--+.|+.+.....-| +++...|+|.+|+..++.+.+..|..+.+.-
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~----------------------~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kA 82 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDG----------------------WLHIVRGDWDDALRLLRELEERAPGFPYAKA 82 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHhccCCCChHHHH
Confidence 588888888888888888888888888 8888889999999999998888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398 (436)
Q Consensus 362 ~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~l 398 (436)
.++.|++.+|+ ..=..+-.++++..++ +.+....
T Consensus 83 LlA~CL~~~~D--~~Wr~~A~evle~~~d-~~a~~Lv 116 (160)
T PF09613_consen 83 LLALCLYALGD--PSWRRYADEVLESGAD-PDARALV 116 (160)
T ss_pred HHHHHHHHcCC--hHHHHHHHHHHhcCCC-hHHHHHH
Confidence 88888888877 3333444445555543 4444333
No 283
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.36 Score=52.11 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=56.4
Q ss_pred HhhhhhhCCCHHHHHHHHHHH------HH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 204 VDLIMPNFDDSAEAEEYYKRM------ID----------------EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~a------l~----------------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
++.+....+-|++|...|++- ++ ..-+.+.+|..+|.+..+.|...+|++-|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 344555556667777766642 11 01245677888888888888888888877654
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+++..+...-.+....+. |++-++++.-+-+.
T Consensus 1131 --dDps~y~eVi~~a~~~~~-~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGK-YEDLVKYLLMARKK 1162 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCc-HHHHHHHHHHHHHh
Confidence 566667666666666664 88777777766554
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.43 E-value=0.0065 Score=36.79 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 285
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.42 E-value=1.6 Score=46.24 Aligned_cols=236 Identities=14% Similarity=0.061 Sum_probs=132.0
Q ss_pred CCCChHHHHHhhcCCCCCCC-h----hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCC---CHH-HHHHH--HHHHHHcC
Q 013800 178 RPVSPPMYLAMGLGISVPGF-D----DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC---HPL-LLRNY--AQLLQKKG 246 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~-~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~-~~~~l--a~~~~~~g 246 (436)
+.+.|+.|+.+|+.+..... . .+-..+..++.+.+... |+..+++.++.... ... ..+.+ ...+...+
T Consensus 75 n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~ 153 (608)
T PF10345_consen 75 NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK 153 (608)
T ss_pred CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence 66777888888877765411 1 22334456666666655 88888887775443 221 11122 22333346
Q ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHH
Q 013800 247 DLYRAEDYYNHATMAD--PGDGESWMQ----YAKLVWELHRDQHRALTYFERAALAAP----------QDSNILAAYACF 310 (436)
Q Consensus 247 ~~~~A~~~~~~al~~~--p~~~~~~~~----la~~~~~~~~d~~~A~~~~~~al~~~p----------~~~~~~~~la~~ 310 (436)
++..|++.++...... ..++.+... .+.++...+ ..+++++.+++++.... ....+|..+-.+
T Consensus 154 d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 154 DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 8888888888877765 344433222 233333333 26677777776643221 112333333322
Q ss_pred --HHHccCchHHHHHHHH---HHHH---------------------------------------------------hHHH
Q 013800 311 --LWEMEDDGEDDKAQEE---HIQV---------------------------------------------------LPIQ 334 (436)
Q Consensus 311 --~~~~g~~~~A~~~~~~---~~~~---------------------------------------------------~~~~ 334 (436)
....|+...+...+.+ .++. ....
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~ 312 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNL 312 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHh
Confidence 3333443344433331 1100 3344
Q ss_pred HcCCHHHHHHHHHHHHHhCCC----------C----------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 335 SKGDLEGAEEYFSRAILANPG----------D----------------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~----------~----------------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
..+..++|.+++.++++.-.+ . ..+....+.+.+-.++ +..|...+..+....
T Consensus 313 ~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~-~~~a~~~l~~~~~~~ 391 (608)
T PF10345_consen 313 YKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD-WSKATQELEFMRQLC 391 (608)
T ss_pred hccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHH
Confidence 455566777777777764111 0 1233455666677778 888888888776543
Q ss_pred ---CC------CHHHHHHHHHHHHHCCChHHHHHHHH
Q 013800 389 ---PA------DSHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 389 ---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 416 (436)
|. .+..++..|..+...|+.+.|...|.
T Consensus 392 ~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 392 QRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred hcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 22 35677888888889999999999998
No 286
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.38 E-value=0.29 Score=45.19 Aligned_cols=175 Identities=11% Similarity=0.086 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCC
Q 013800 212 DDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~d 282 (436)
.+.++|+.-|++.+++.++.. .++..+..+++++++|++-++.|.+.+.. ..+..+-..+-..-|....++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 455677777777777766544 34555566667777777777766666542 111111111111111111122
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHHccCchHHHHHHHHHHHH------------------------hH
Q 013800 283 QHRALTYFERAALA--APQDSNIL----AAYACFLWEMEDDGEDDKAQEEHIQV------------------------LP 332 (436)
Q Consensus 283 ~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~------------------------~~ 332 (436)
.+--...|+..++. +..+...| ..+|.++...+.+.+..+++.+..+. ..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 33333344443332 12233334 24666666666665555555433322 55
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGD--GEIMS----QYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
|..+++-.+-...|++++.+...- |.++- .=|..+.+.|+ |++|-..|-.|++.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~-fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE-FEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch-HHHHHhHHHHHHhc
Confidence 666666667777788877764321 22221 22344566677 88887777777764
No 287
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.28 E-value=0.19 Score=52.31 Aligned_cols=207 Identities=13% Similarity=0.073 Sum_probs=112.7
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHH------HHHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKR------MIDE----YPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~------al~~----~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (436)
|-..|.++.+..++++|+++|++ ++++ .|... ..--..|.-+...|+++.|+.+|-.+-.+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~-------- 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL-------- 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------
Confidence 44455666777777778777764 3332 23221 12223455566777888887777654211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHH
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEY 345 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~ 345 (436)
........... +|.+|+..++..-... .....+-..+.-|...|+++.|.+++.+.-.. ..|-+.|+|.+|.++
T Consensus 736 ~kaieaai~ak-ew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 736 IKAIEAAIGAK-EWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHHHHHHhhhh-hhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHH
Confidence 00000111122 3666666555433221 12223345566677777888887777633221 777788888888766
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHH-------------HHHHHHH------HH----hCCCC-HHHHHHHHH
Q 013800 346 FSRAILANPGD-GEIMSQYAKLVWELHHDHDKA-------------LCYFERA------VQ----ASPAD-SHVLAAYAC 400 (436)
Q Consensus 346 ~~~al~~~p~~-~~~~~~la~~~~~~g~d~~~A-------------~~~~~~a------l~----~~p~~-~~~~~~la~ 400 (436)
-++.. .|.. ...|...+.-+-..|+ |.+| +.+|.+. +. ..|+. .+.+..++.
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgk-f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGK-FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAK 890 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcc-hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHH
Confidence 55543 2332 2334444555555555 5544 4444432 11 12332 256677888
Q ss_pred HHHHCCChHHHHHHHHHHHh
Q 013800 401 FLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~ 420 (436)
-|...|+...|...|-++-.
T Consensus 891 e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHhccChhHHHHHHHhhhh
Confidence 88888888888887765543
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=0.21 Score=51.65 Aligned_cols=186 Identities=18% Similarity=0.101 Sum_probs=103.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 224 MIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW----------MQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 224 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
.++.+| ++..|..+|.....+-.++-|+..|-+.-.. +.- ... ...|.+-..-| +|++|.+.|-.+
T Consensus 685 fiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g-~feeaek~yld~ 760 (1189)
T KOG2041|consen 685 FIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYG-EFEEAEKLYLDA 760 (1189)
T ss_pred HHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhc-chhHhhhhhhcc
Confidence 345566 7888999998888888888888777665221 110 011 12222222233 366666665332
Q ss_pred HHhC-------------------------C---CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHH
Q 013800 294 ALAA-------------------------P---QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEG 341 (436)
Q Consensus 294 l~~~-------------------------p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~ 341 (436)
-+.+ . ....++.++|..+..+..+++|.++|...-.. .+++...+|++
T Consensus 761 drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 761 DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 1111 1 12345666666666666666666666533222 45555555544
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------------HHhC-----CCCHHHHHH
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA-------------------VQAS-----PADSHVLAA 397 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a-------------------l~~~-----p~~~~~~~~ 397 (436)
-.. ....-|++.+.+-.+|.++...|. .++|.+.|-+. +++. |.-......
T Consensus 841 LE~----la~~Lpe~s~llp~~a~mf~svGM-C~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak 915 (1189)
T KOG2041|consen 841 LEV----LARTLPEDSELLPVMADMFTSVGM-CDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAK 915 (1189)
T ss_pred HHH----HHHhcCcccchHHHHHHHHHhhch-HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 322 233458888888888888888888 88887766432 1111 221122233
Q ss_pred HHHHHHHCCChHHHHHHHHHH
Q 013800 398 YACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~a 418 (436)
.+.-+...++.-+|++.++++
T Consensus 916 ~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 916 QAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHhhcchHHHHHHhhhc
Confidence 344466667777788777766
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.27 E-value=0.009 Score=37.38 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
|.++|.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 290
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.25 E-value=0.01 Score=35.88 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
+++.+|.++...|+ +++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~-~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGD-YDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHHCcC
Confidence 45666666666666 66666666666666665
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.23 E-value=0.17 Score=42.43 Aligned_cols=75 Identities=12% Similarity=-0.077 Sum_probs=64.9
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
.-...++.+++..++..+--+.|+.+.+-..-|.++...|++.+|+..++...+..+..+...-.++.|++.++.
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 444478889999999999999999999999999999999999999999999998888888888888888777753
No 292
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.21 E-value=0.013 Score=54.68 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=62.2
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.+.|+.++|..+|+.++.+.|++++++..+|.+....++.-+|-.+|.+|+.+.|.+.+++.+.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3459999999999999999999999999999999999999999999999999999999988877653
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.10 E-value=0.012 Score=36.84 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 394 VLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
++.+||.++..+|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46778888888888888888888866553
No 294
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.05 E-value=0.17 Score=40.62 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=66.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HhCCCCHH
Q 013800 333 IQSKGDLEGAEEYFSRAILANPG------------DGEIMSQYAKLVWELHHDHDKALCYFERAV-------QASPADSH 393 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~d~~~A~~~~~~al-------~~~p~~~~ 393 (436)
...-|-|++|...+++|+++... +.-.+..|+.++..+|+ |++++..-.++| +++.+...
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr-y~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR-YDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHhhccccccccch
Confidence 34568999999999999987422 24567788999999999 998887777766 45555554
Q ss_pred ----HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 394 ----VLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 394 ----~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+.++.+..+..+|+.++|+..|+.+-++
T Consensus 98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4577889999999999999999998775
No 295
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.21 Score=50.77 Aligned_cols=143 Identities=17% Similarity=0.000 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRN--YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY 289 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~ 289 (436)
+...-++..+...+.++|.++..+.. +...+...+....+...+..++..+|++..+..+++..+...++.+.-+...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444777777777888888876443 4677778888889999999999999999999999998888777655566666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
.+.+....|.+......+..++. .+ ......|+..++.....++++..|.++.+...+.....+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQ-LG---------------RYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHH-HH---------------HHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 66689999999888777755544 33 667778999999999999999999987777666666444
Q ss_pred h
Q 013800 370 L 370 (436)
Q Consensus 370 ~ 370 (436)
.
T Consensus 189 ~ 189 (620)
T COG3914 189 Q 189 (620)
T ss_pred h
Confidence 3
No 296
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.35 Score=49.26 Aligned_cols=139 Identities=17% Similarity=0.094 Sum_probs=103.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 245 KGDLYRAEDYYNHATMADPGDGESWMQY--AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
.+...-++..+...+.++|.++..+... ...+...+ +...+...+..++..+|.+..+..+++.
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~L~~------------- 109 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLA-DSTLAFLAKRIPLSVNPENCPAVQNLAA------------- 109 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccc-cchhHHHHHhhhHhcCcccchHHHHHHH-------------
Confidence 3444447778888888899998875544 44444444 4678899999999999999999999994
Q ss_pred HHHHHHHHhHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 323 AQEEHIQVLPIQSKGD-LEGAEEYFSRAILANPGDGEIMSQY------AKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 323 ~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l------a~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
.....|. +.-+..+.+.+....|.+......+ +..+..+|+ ..++...+.+++.+.|.++.+.
T Consensus 110 ---------ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 110 ---------ALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-TAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred ---------HHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhhhhhhhH
Confidence 3333444 4444555555888899988877766 888888999 9999999999999999998777
Q ss_pred HHHHHHHHHCCC
Q 013800 396 AAYACFLWETEE 407 (436)
Q Consensus 396 ~~la~~~~~~g~ 407 (436)
..+.....++..
T Consensus 180 ~~~~~~r~~~cs 191 (620)
T COG3914 180 GALMTARQEQCS 191 (620)
T ss_pred hHHHHHHHHhcc
Confidence 666655444443
No 297
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.98 E-value=0.068 Score=42.47 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=65.2
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCCCCHHHHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKG----D-------LYRAEDYYNHATMADPGDGESWM 270 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g----~-------~~~A~~~~~~al~~~p~~~~~~~ 270 (436)
+..+...|++-+|+++.+..+..++++. ..+...|.++..+. + .-.+++.|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4456778999999999999999888766 45666777776433 2 23577788888888888877777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
.+|.-+-.... |++++.-.++++.+
T Consensus 83 ~la~~l~s~~~-Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKY-YKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence 77765444443 77777777776654
No 298
>PRK10941 hypothetical protein; Provisional
Probab=95.94 E-value=0.067 Score=50.21 Aligned_cols=67 Identities=16% Similarity=0.067 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
++=.+|.+.++++.|+.+.++.+.+.|+++.-+...|.+|.+++. +..|...++..++..|+++.+-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c-~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC-EHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCchhHH
Confidence 334444445555555555555555555555545555544444443 4555555555555555444433
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.94 E-value=0.13 Score=39.57 Aligned_cols=64 Identities=14% Similarity=-0.016 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHc
Q 013800 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD--GESWMQYAKLVWELH 280 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~ 280 (436)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 4567888889999999999999999999999999999999888887764 444444444444444
No 300
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.87 E-value=0.048 Score=37.41 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
+.++.+|..+++.|+|++|..+.+.+++..|++..+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 35667777777777777777777777777777766654443
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.84 E-value=0.05 Score=37.32 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.++.+|..++++|+ |.+|..+++.+|++.|++..+......+
T Consensus 2 d~lY~lAig~ykl~~-Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGE-YEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456778888888888 8888888888888888887766544433
No 302
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.82 E-value=0.29 Score=48.26 Aligned_cols=164 Identities=17% Similarity=0.166 Sum_probs=112.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-- 330 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 330 (436)
-.+++++..-|-.+++|+.....+...+ |-+.|+...++++...|. ....++.++...++.+.....++.+++.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~is-d~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGIS-DKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhcc-HHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 3567788888888999998887766665 578888888888777776 5566666666655555555555433332
Q ss_pred -----------------------hHH-----------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 331 -----------------------LPI-----------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 331 -----------------------~~~-----------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++ .+..-.+.|...|-++-+..-....++..-|.+-+..
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Confidence 111 1122234455555555443323345555555554444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 371 HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 371 g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
.+|+.-|-..|+-.+...|+.+.....+-..+...++...|...|+.++.
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 44499999999999999999998888888999999999999999996554
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.79 E-value=0.49 Score=44.85 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-CHHHHHHHHHHHHHh----CC--
Q 013800 283 QHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-DLEGAEEYFSRAILA----NP-- 354 (436)
Q Consensus 283 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~----~p-- 354 (436)
++.|..++.|+-... ..++.....++.+++..| ......+ +++.|+.++++++++ .+
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G---------------~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~ 73 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG---------------KSLLSKKDKYEEAVKWLQRAYDILEKPGKMD 73 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH---------------HHHHHcCCChHHHHHHHHHHHHHHHhhhhcc
Confidence 555555555554443 333333334444444433 4445555 677777777776665 11
Q ss_pred -CC-------HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 355 -GD-------GEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 355 -~~-------~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.. ..++..++.++...+. ..++|...++.+-...|+.+.++...-.++...++.+++.+.+.+.+.-
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 11 2345566666666554 1223444444444445665555544445555566666666666665543
No 304
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.65 E-value=0.045 Score=54.72 Aligned_cols=90 Identities=28% Similarity=0.264 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK---KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
+....|+..|.+++...|+....+.++|.++++ .|+.-.|+.....|++++|....+|+.|+.++..+++ +.+|+.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHhhh
Confidence 677889999999999999999999999999886 4677788888889999999999999999999999987 999999
Q ss_pred HHHHHHHhCCCCHH
Q 013800 289 YFERAALAAPQDSN 302 (436)
Q Consensus 289 ~~~~al~~~p~~~~ 302 (436)
+...+....|.+..
T Consensus 467 ~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 467 CHWALQMSFPTDVA 480 (758)
T ss_pred hHHHHhhcCchhhh
Confidence 99988888885543
No 305
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.65 E-value=3.7 Score=43.58 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHHHcCC
Q 013800 214 SAEAEEYYKRMIDEYPC----HPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPG--DGE----SWMQYAKLVWELHRD 282 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~~~d 282 (436)
...|+.+++-+++..+- .+.+++.+|.+++ ...++++|+.++.+++.+... ..+ ....++.++...+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~-- 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN-- 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC--
Confidence 35677788777753221 2367889999998 799999999999999887643 222 3345677777664
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 013800 283 QHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PGDGEI 359 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 359 (436)
...|...++++++...+ ....|...-.++.. ......+++..|++.++...... ..++.+
T Consensus 115 ~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~-----------------~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 115 PKAALKNLDKAIEDSETYGHSAWYYAFRLLKI-----------------QLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHH-----------------HHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 45599999999987655 22223222222211 22333389999999999988775 355443
Q ss_pred H----HHHHHHHHHhcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHCCChHHHHHHHHHHHh
Q 013800 360 M----SQYAKLVWELHHDHDKALCYFERAVQASP----------ADSHVLAAYAC--FLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 360 ~----~~la~~~~~~g~d~~~A~~~~~~al~~~p----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~ 420 (436)
. ...+.+....+. .+++++.++++..... ....+|..+-. +....|+++.+...+++...
T Consensus 178 ~v~~~l~~~~l~l~~~~-~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGS-PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 223444555666 6788888887744321 12345555544 35667777777776665544
No 306
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=95.64 E-value=0.47 Score=45.10 Aligned_cols=188 Identities=15% Similarity=0.067 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
-++|+.+=+-.+.+-|..++++-.++.++++..+...=...=-..+-+...+...|.. .- .+++...+.++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r--------~l-I~eg~all~rA 282 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDR--------AL-IDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhH--------HH-HHHHHHHHHHH
Confidence 4678888888888888888888777777665332221110000111122223333322 21 67888888888
Q ss_pred HHhCC-CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 294 ALAAP-QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 294 l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
+.... .-....-.++.+... .-....-+|..-..+|.-...+.|. +.+-.|.+.+..+...
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~-----------------a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~G 344 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHAR-----------------ARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREG 344 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHh-----------------hcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhh
Confidence 87653 333333333322221 1122345788878888877777776 6677778888887777
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013800 373 DHDKALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 373 d~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 429 (436)
.+.++...+..... -.+....+...|.++.++|+.++|...|++++.+.++-.+..
T Consensus 345 -p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 345 -PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred -HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 78888887766554 233456678889999999999999999999999987765543
No 307
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.63 E-value=1.6 Score=44.04 Aligned_cols=178 Identities=12% Similarity=0.059 Sum_probs=115.5
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
++...-.++-..-++.+++.... +..+++.++++|... ..++-...+++.++.+-++...-..++..|.. . +...+
T Consensus 75 ~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i-k~sk~ 150 (711)
T COG1747 75 IFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I-KKSKA 150 (711)
T ss_pred HhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h-chhhH
Confidence 34444445555666777777654 677888899999887 66777788888888888888888888876655 3 37888
Q ss_pred HHHHHHHHHhC-C--CCH---HHHHHHHHHHHHccC-chHHHHHHHHHHHH--------------hHHHHcCCHHHHHHH
Q 013800 287 LTYFERAALAA-P--QDS---NILAAYACFLWEMED-DGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 287 ~~~~~~al~~~-p--~~~---~~~~~la~~~~~~g~-~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~ 345 (436)
..+|.+++..- | +++ ++|..+- ...|+ .+.-.....+.-.. .-|....+|.+|++.
T Consensus 151 a~~f~Ka~yrfI~~~q~~~i~evWeKL~---~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~I 227 (711)
T COG1747 151 AEFFGKALYRFIPRRQNAAIKEVWEKLP---ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRI 227 (711)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHH---HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHH
Confidence 88888887542 2 122 2222222 11111 12222211111111 445667899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHHHhCCCC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWE-------------------LHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~-------------------~g~d~~~A~~~~~~al~~~p~~ 391 (436)
+...++.+..+..+.-++...+.. .|+++.+++..|++.+-.+..+
T Consensus 228 lk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 228 LKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 999999999988888777766654 2445778888888777665544
No 308
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.63 E-value=0.46 Score=46.74 Aligned_cols=138 Identities=9% Similarity=0.034 Sum_probs=80.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH--cCCHHHHHHHHHH-HHHh---CCCC---HHHHHHH
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS--KGDLEGAEEYFSR-AILA---NPGD---GEIMSQY 363 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~g~~~~A~~~~~~-al~~---~p~~---~~~~~~l 363 (436)
.++.+|-+.+++..++.++..+|+...|.+.+++++-. +.. ...+..-...... ..++ .+.| ..+++..
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~--~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA--FERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 45678999999999996555555555555555443321 000 0000000000000 0000 1222 2356677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHHCCChHHHHHHHHHHHh--------hCCCChhHHhhhh
Q 013800 364 AKLVWELHHDHDKALCYFERAVQASPA-DSHVL-AAYACFLWETEEDEDDSKSSDQFQQ--------VAPIRQGAVTTAN 433 (436)
Q Consensus 364 a~~~~~~g~d~~~A~~~~~~al~~~p~-~~~~~-~~la~~~~~~g~~~~A~~~~~~al~--------l~p~~~~a~~~an 433 (436)
...+.+.|- +..|.++++-.+.++|. |+... ..+-....+.++++--++.++.... .-|++.-+..+|.
T Consensus 110 i~~L~~RG~-~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 110 IQSLGRRGC-WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHhcCc-HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 778889999 99999999999999999 77544 4444455667777777777776544 3466666555443
No 309
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=1.1 Score=45.69 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=65.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHDHDKALCYFERA-----VQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d~~~A~~~~~~a-----l~~~p~~~~~~~~la~~~~~ 404 (436)
..+.+.|-|..|.++++-.+.++|. ||-+...+...|.-..++|+=-++.++.. +..-|+.+. -..+|.+|..
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~ 428 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLR 428 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHh
Confidence 5566789999999999999999998 88777777777665555476666666554 334455332 2455666666
Q ss_pred CCC---hHHHHHHHHHHHhhCC
Q 013800 405 TEE---DEDDSKSSDQFQQVAP 423 (436)
Q Consensus 405 ~g~---~~~A~~~~~~al~l~p 423 (436)
... -+.|...+.+|+.+.|
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCc
Confidence 655 4668888888888776
No 310
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.51 E-value=0.023 Score=33.19 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
+..+|.++...+++++|+..|+++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444455555555555555544444443
No 311
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.49 E-value=1.6 Score=41.54 Aligned_cols=174 Identities=14% Similarity=0.029 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------CC--H
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-----------------------GD--G 266 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~--~ 266 (436)
.+..+-++.-..+++++|+.+.+|..+|.- ...-..+|+..++++++... .+ .
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~ 275 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLV 275 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhh
Confidence 444556666677777888777777766642 22234566666666655311 11 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD--SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
.+-..+|.|-.++|+ ..+|++.++...+-.|-. ..++-++...+.+..-+.+....+ .-|........|.-
T Consensus 276 YIKRRLAMCARklGr-lrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL------akYDdislPkSA~i 348 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGR-LREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL------AKYDDISLPKSAAI 348 (556)
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhccccCcchHHH
Confidence 234567777777775 888888888887776632 223344444444433332222222 11222333334444
Q ss_pred HHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 345 YFSRAILA-----NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 345 ~~~~al~~-----~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
+|..|+-. +.-.++.-...|..-. -..|++.+.+|++.+|.-+..+..+-
T Consensus 349 cYTaALLK~RAVa~kFspd~asrRGLS~A-----E~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 349 CYTAALLKTRAVSEKFSPETASRRGLSTA-----EINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHHHHHHHhhcCchhhhhccccHH-----HHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 44444321 1111222222222211 24678888889999888776655543
No 312
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.44 E-value=1.8 Score=46.45 Aligned_cols=192 Identities=16% Similarity=0.079 Sum_probs=116.5
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHH
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG----D--GESWMQ 271 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~ 271 (436)
..|.+....|++++|+++.+.++..-|.+. .++..+|.+..-.|++++|..+..++.+.... . ..+...
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~ 542 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQ 542 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 346678889999999999999999887654 56788899999999999999999999887332 2 223344
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 272 YAKLVWELHR-DQHRALTYFERAA----LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 272 la~~~~~~~~-d~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.+.++...|. -+.+.+..|...- ...|-........+.++ +.+.+ ++.+..-.
T Consensus 543 ~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll-------------------~~~~r---~~~~~~ea 600 (894)
T COG2909 543 QSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL-------------------RAWLR---LDLAEAEA 600 (894)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH-------------------HHHHH---HhhhhHHh
Confidence 4666666651 0333333333332 22333333333344332 22222 44444444
Q ss_pred HHHHHh----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---H--HHHHHHHH--HHHHCCChHHHH
Q 013800 347 SRAILA----NPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---S--HVLAAYAC--FLWETEEDEDDS 412 (436)
Q Consensus 347 ~~al~~----~p~~~---~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~---~--~~~~~la~--~~~~~g~~~~A~ 412 (436)
..++++ .|... -+++.|+.+.+..|+ +++|...+.....+.-.. . .+...... ....+|+.++|.
T Consensus 601 r~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd-l~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~ 679 (894)
T COG2909 601 RLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD-LDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAA 679 (894)
T ss_pred hhcchhhhhcccchhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHH
Confidence 444443 23222 223578999999999 999999998876653222 1 11122222 233567777776
Q ss_pred HHHHH
Q 013800 413 KSSDQ 417 (436)
Q Consensus 413 ~~~~~ 417 (436)
....+
T Consensus 680 ~~l~~ 684 (894)
T COG2909 680 EWLLK 684 (894)
T ss_pred HHHHh
Confidence 65554
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=1.5 Score=51.66 Aligned_cols=212 Identities=13% Similarity=0.112 Sum_probs=126.7
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK-LVWELHRDQHR 285 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~d~~~ 285 (436)
.....|+++.|..+|+++++.+|+....+...-...+..|.++..+...+-.....++...-|+.++. +-|..+. |+.
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q-wD~ 1536 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ-WDL 1536 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc-hhh
Confidence 44567888888999999988888877777777777777888888887777666666665555555542 2244432 554
Q ss_pred HHHHHH-------------HH-HHhCCCCHHHHH-H-------HHHHHHHccCchHHHHHHHHHHHH-------------
Q 013800 286 ALTYFE-------------RA-ALAAPQDSNILA-A-------YACFLWEMEDDGEDDKAQEEHIQV------------- 330 (436)
Q Consensus 286 A~~~~~-------------~a-l~~~p~~~~~~~-~-------la~~~~~~g~~~~A~~~~~~~~~~------------- 330 (436)
-..+.- ++ +.....|..+-. . .+.-+...+........|+-..+.
T Consensus 1537 ~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l 1616 (2382)
T KOG0890|consen 1537 LESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEEL 1616 (2382)
T ss_pred hhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443321 11 111111111110 0 000011111111111111100000
Q ss_pred ---------------h--HHHHcCC---HHHHHHHHHHHHH---hCC----CCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 331 ---------------L--PIQSKGD---LEGAEEYFSRAIL---ANP----GDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 331 ---------------~--~~~~~g~---~~~A~~~~~~al~---~~p----~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
+ -....+. ..+-+-.+++++. ++| .-.+.|...|++....|+ ++.|..++-+
T Consensus 1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~-~q~A~nall~ 1695 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH-LQRAQNALLN 1695 (2382)
T ss_pred hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc-HHHHHHHHHh
Confidence 0 1111111 2233333444432 232 347899999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|.+..+ +.++...|+.++.+|+...|+.++++.++++
T Consensus 1696 A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1696 AKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 988874 5889999999999999999999999999764
No 314
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.35 E-value=0.03 Score=32.63 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
++..+|.++..+++ +++|+..+++++++.|.
T Consensus 3 ~~~~~a~~~~~~~~-~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGD-YDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHccCCC
Confidence 45556666666666 66666666666655553
No 315
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.15 E-value=0.037 Score=49.66 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=54.5
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
...+.++.+.|.+.|.+++++.|+...-|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445668999999999999999999999999999999999999999999999999999863
No 316
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.12 E-value=0.22 Score=45.13 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=46.3
Q ss_pred hHHHHcCC-------HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHH
Q 013800 331 LPIQSKGD-------LEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-HVLA 396 (436)
Q Consensus 331 ~~~~~~g~-------~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-~~~~ 396 (436)
++|...|+ +.+|...|.++++... +...+++.+|.+..+.|+ +++|+++|.+++....... ..+.
T Consensus 126 WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~-~~eA~~~fs~vi~~~~~s~~~~l~ 204 (214)
T PF09986_consen 126 WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGN-YDEAKRWFSRVIGSKKASKEPKLK 204 (214)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHcCCCCCCcHHHH
Confidence 55555555 3456666666665432 235678889999999999 9999999999987543332 3445
Q ss_pred HHHHH
Q 013800 397 AYACF 401 (436)
Q Consensus 397 ~la~~ 401 (436)
.+|.=
T Consensus 205 ~~AR~ 209 (214)
T PF09986_consen 205 DMARD 209 (214)
T ss_pred HHHHH
Confidence 55543
No 317
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.11 E-value=0.046 Score=51.20 Aligned_cols=88 Identities=13% Similarity=0.182 Sum_probs=54.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 221 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
|.++....|.++..|..++....+.|-|.+--..|.++++.+|.+.+.|.--+..-+....+++.+...|.++++.+|+.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 44444555666666666666666666666666677777777777766666533333333334666777777777777776
Q ss_pred HHHHHHHH
Q 013800 301 SNILAAYA 308 (436)
Q Consensus 301 ~~~~~~la 308 (436)
+..|..+-
T Consensus 176 p~iw~eyf 183 (435)
T COG5191 176 PRIWIEYF 183 (435)
T ss_pred chHHHHHH
Confidence 66665443
No 318
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.04 E-value=3.4 Score=39.47 Aligned_cols=176 Identities=11% Similarity=-0.019 Sum_probs=102.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH-
Q 013800 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK- 322 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~- 322 (436)
+..+..+-+.....+++++|+.+.++..+|.--.. -..+|.+.++++++..... ++..+.....|...+|..
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~---Ti~~AE~l~k~ALka~e~~----yr~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT---TIVDAERLFKQALKAGETI----YRQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh---hHHHHHHHHHHHHHHHHHH----HhhHHHHhhhccchhhhhh
Confidence 33445556677788999999999999988854332 2788999999998764321 111222222222222221
Q ss_pred ---HHHHHHHH---hHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Q 013800 323 ---AQEEHIQV---LPIQSKGDLEGAEEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSH 393 (436)
Q Consensus 323 ---~~~~~~~~---~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-p~~~~ 393 (436)
...-|+++ .+..++|+..+|++.++...+-.|-. ..+.-+|-.++..+.- |.+....+.+.-++. |....
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA-YADvqavLakYDdislPkSA~ 347 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA-YADVQAVLAKYDDISLPKSAA 347 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccCcchHH
Confidence 11233333 77788999999999999988877732 2344566666666555 555554444433322 44333
Q ss_pred HHHHHHHH-------------HHHCCC---hHHHHHHHHHHHhhCCCChh
Q 013800 394 VLAAYACF-------------LWETEE---DEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 394 ~~~~la~~-------------~~~~g~---~~~A~~~~~~al~l~p~~~~ 427 (436)
+.+.-+.+ -.+.|- ...|++...++.+.+|+.+.
T Consensus 348 icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 348 ICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcH
Confidence 33222211 111111 23478889999999987654
No 319
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.99 E-value=0.94 Score=45.84 Aligned_cols=170 Identities=17% Similarity=0.037 Sum_probs=94.9
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCH-PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRAL 287 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~ 287 (436)
...++++++..+.+.. ++-|.- .......+..+.++|-++.|+... .|+...+.|| .+.|+ ++.|.
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~-L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGN-LDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT--HHHHH
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCC-HHHHH
Confidence 4457788876666421 111222 344667778888899888887754 3556666666 45553 66666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 288 TYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 288 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
+..++ -+++..|..|| .....+|+++-|+++|+++- -+..|..+|
T Consensus 339 ~~a~~-----~~~~~~W~~Lg----------------------~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy 383 (443)
T PF04053_consen 339 EIAKE-----LDDPEKWKQLG----------------------DEALRQGNIELAEECYQKAK--------DFSGLLLLY 383 (443)
T ss_dssp HHCCC-----CSTHHHHHHHH----------------------HHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred HHHHh-----cCcHHHHHHHH----------------------HHHHHcCCHHHHHHHHHhhc--------CccccHHHH
Confidence 54432 34778999999 78888899999999888752 244556666
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhcC
Q 013800 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVYA 436 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~an~ya 436 (436)
.-.|+ .+.-.++...+..... +...-.+++.+|+.++.++.+.++- .+++|+..|..|+
T Consensus 384 ~~~g~-~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~~~----~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 384 SSTGD-REKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLLIETG----RLPEAALFARTYG 442 (443)
T ss_dssp HHCT--HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHTT-----HHHHHHHHHHTT
T ss_pred HHhCC-HHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHHcC----CchHHHHHHHhcC
Confidence 77777 5444444444433322 1222234555677777766555443 3356666666653
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.88 E-value=0.43 Score=47.49 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=79.5
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY 289 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~ 289 (436)
..|+.-.|-..+..++...|.++......+.+...+|+|+.|...+..+-..-.....+...+-.-++.+++ +++|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r-~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR-WREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh-HHHHHHH
Confidence 446666676777777777777777777777777777777777776665544433333333333344455554 6776666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
-.-.+.-.-+++++...-+ .....+|-++++..++++.+.++|....
T Consensus 380 a~~~l~~eie~~ei~~iaa----------------------~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAA----------------------GSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHhccccCChhheeeec----------------------ccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 6655554444554443333 3445678889999999999998876433
No 321
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=4.1 Score=41.73 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=99.5
Q ss_pred hCCCHHHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------
Q 013800 210 NFDDSAEAEEYYKRMIDEY------------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA---------------- 261 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 261 (436)
....|++|...|.-++... |-+.+.+..++.+...+|+.+-|....++++-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3456888998888887753 556788999999999999998887777777642
Q ss_pred -----CCCCHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013800 262 -----DPGDGESWMQYA---KLVWELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 262 -----~p~~~~~~~~la---~~~~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
.|.+...|..+- ..+... |-+.-|.++++-.+.++|. ++.....+...+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~R-GC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~--------------------- 387 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQR-GCWRTALEWCKLLLSLDPSEDPLGILYLIDIY--------------------- 387 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCcCCchhHHHHHHHH---------------------
Confidence 233333333322 222233 4589999999999999998 877666555322
Q ss_pred HHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCC
Q 013800 333 IQSKGDLEGAEEYFSRA-----ILANPGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASP 389 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p 389 (436)
..+..+|+--|+.++.. +..-|+. ..-..+|..|..... +-+.|...+.+|+...|
T Consensus 388 ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 388 ALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 33455666666665555 2233442 222234444444333 14567778888887766
No 322
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=3.1 Score=43.07 Aligned_cols=90 Identities=8% Similarity=0.067 Sum_probs=78.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.-.++..+|..++++|...+..-|.| .....+++.||..+.+ .++|.+++++|-+.+|.++-....+-.+...
T Consensus 362 ~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 362 KKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 56778899999999999999876654 5677889999999999 9999999999999999999888888888889
Q ss_pred CCChHHHHHHHHHHHhh
Q 013800 405 TEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 405 ~g~~~~A~~~~~~al~l 421 (436)
.|.-++|+.+.......
T Consensus 441 E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSS 457 (872)
T ss_pred hcchHHHHHHHHHHHhh
Confidence 99999999888776654
No 323
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.58 E-value=0.13 Score=51.49 Aligned_cols=103 Identities=13% Similarity=-0.080 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+.+.+..-|.-.+..+....|+..|.+++...|.....+.+++.++.+.+ +|.-.|+.....|++++|....+|+.|+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 34444444444444555666666666766666666666666666655543 1334566666666666666666666666
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
.++..++++.+|+.+...+....|.
T Consensus 453 ----------------------~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 453 ----------------------RALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred ----------------------HHHHHHhhHHHhhhhHHHHhhcCch
Confidence 5555666666666666555555553
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.52 E-value=0.72 Score=38.80 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=64.1
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
..-...++.+++...+...--+.|+.+++-..-|+++...|+ |.+|+..|+...+-.+..+.....++.|+.-+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~-w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGN-YDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCC-HHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 444557889999888888888899999999999999999999 99999999998887777777777777777777764
No 325
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.47 E-value=1 Score=46.86 Aligned_cols=89 Identities=17% Similarity=0.056 Sum_probs=50.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW 368 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 368 (436)
....-|++...+-.+|..+...|.-++|.+.+.+.-.. .....+++|.+|+++.++-- -|.-.......+.-+.
T Consensus 844 la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 844 LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLL 921 (1189)
T ss_pred HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHH
Confidence 34445788888888888888888777777655432211 44455566666666544321 1221222223333444
Q ss_pred HhcCCHHHHHHHHHHH
Q 013800 369 ELHHDHDKALCYFERA 384 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~a 384 (436)
..++ ..+|++..+++
T Consensus 922 ~~~~-~~eaIe~~Rka 936 (1189)
T KOG2041|consen 922 ADAN-HMEAIEKDRKA 936 (1189)
T ss_pred hhcc-hHHHHHHhhhc
Confidence 5556 67777777766
No 326
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.44 E-value=0.052 Score=48.73 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=48.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
..+.++.+.|.+.|.+++++.|+....|+.+|....+.|+ ++.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~-~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE-FDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc-HHHHHHHHHHHHcCCcccc
Confidence 3456788888888888888888888888888888888888 8888888888888888764
No 327
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.32 E-value=1.1 Score=47.06 Aligned_cols=74 Identities=22% Similarity=0.159 Sum_probs=36.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCChH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-HVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~ 409 (436)
.-|...|+|+.|.++|.++- ....-...|.+.|+ |.+|.++-++.. .|... ..|...+.-+-+.|++.
T Consensus 773 dhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~k-w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGK-WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHhccchhHHHHHHHHHhcc--------hhHHHHHHHhcccc-HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchh
Confidence 44455566666666665431 11122234445556 666655544432 23322 33444455566666666
Q ss_pred HHHHHH
Q 013800 410 DDSKSS 415 (436)
Q Consensus 410 ~A~~~~ 415 (436)
+|.+.|
T Consensus 842 eaeqly 847 (1636)
T KOG3616|consen 842 EAEQLY 847 (1636)
T ss_pred hhhhee
Confidence 555444
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.31 E-value=0.28 Score=48.75 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~ 348 (436)
||.-.|-.-+..+++..|.++......+.+...+|.++.+.+.+...-+. +....+|+|++|.....-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence 36788888888889999999988888887777777777777766533332 455567788888777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHCCC-hHHHHHHHHHHHhhCCCC
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY--ACFLWETEE-DEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~-~~~A~~~~~~al~l~p~~ 425 (436)
.+...-+++++...-+....++|- ++++..++++.+.++|.....|.+. ..-|+..|+ +.+|...--+...++..|
T Consensus 383 ~l~~eie~~ei~~iaa~sa~~l~~-~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (831)
T PRK15180 383 MLSNEIEDEEVLTVAAGSADALQL-FDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAGIQSQRLNDTF 461 (831)
T ss_pred HhccccCChhheeeecccHHHHhH-HHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhhhhhhhhhHHH
Confidence 776666667766666666666667 7888888888887776644333332 223444443 445544444445555555
Q ss_pred hhHHh
Q 013800 426 QGAVT 430 (436)
Q Consensus 426 ~~a~~ 430 (436)
-+.+.
T Consensus 462 ~~~~~ 466 (831)
T PRK15180 462 METAL 466 (831)
T ss_pred HHHHH
Confidence 55443
No 329
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=2.8 Score=41.20 Aligned_cols=172 Identities=14% Similarity=0.117 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK------------KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
.++++.=.+.+..+|+...+|...=.++.. +.-.++-+.+...+++.+|+.-.+|+.+..++......
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 467777777888888877666544333321 22456778888899999999999999999998876654
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 283 -QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 283 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+..-++.++++++.+|.+-.+|...=.+... .-.......+=+++..++|..++.|..+|.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~------------------~~~~~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ------------------AERSRNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHH------------------HhcccccchhHHHHHHHHHhccchhhhHHH
Confidence 7889999999999999988887544322211 111122356678888999999999999999
Q ss_pred HHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 362 QYAKLVWELHHD-----------HDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 362 ~la~~~~~~g~d-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
+...++-.+-.+ ...-++.-..|+-.+|++..+|+..-+++-+
T Consensus 188 yRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 188 YRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 988877532110 2334455566677789998887765544433
No 330
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.27 E-value=1.8 Score=34.91 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=35.8
Q ss_pred hHHHHcCCHHHHHH-------HHHHHHHhCCCCHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 331 LPIQSKGDLEGAEE-------YFSRAILANPGDGEIM----SQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 331 ~~~~~~g~~~~A~~-------~~~~al~~~p~~~~~~----~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
..+..+|+|++++. +|.+-=+++.+....| ++.|.++..+|+ .++|+..|+.+.+.
T Consensus 63 ~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr-~~eA~~~fr~agEM 129 (144)
T PF12968_consen 63 GALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGR-KEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence 44445555555444 4444445566665554 578888999999 99999999998653
No 331
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.22 E-value=0.64 Score=40.81 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAY 307 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~l 307 (436)
.++..+|..|.+.|++++|++.|.++...... -.+.+..+..+....+ |+.....++.++-.+... +.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~~~d~~~~n-- 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEKGGDWERRN-- 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccchHHHHH--
Confidence 56677888888888888888888887665433 2345566666666665 488887777777655332 222211
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
.+-...| ..+...++|.+|...|-.++.-.
T Consensus 114 -rlk~~~g---------------L~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 114 -RLKVYEG---------------LANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred -HHHHHHH---------------HHHHHhchHHHHHHHHHccCcCC
Confidence 1111111 66667899999998887765443
No 332
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.22 E-value=0.44 Score=52.92 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=107.7
Q ss_pred HHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 216 EAEEYYK-RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 216 ~A~~~~~-~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
+++.++. ..-...|+....|..++.++...+++++|+.+-.++.-+ .|+....+.+++...+.... ...|
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~-~~~a 1034 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN-LSGA 1034 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC-ccch
Confidence 3334666 444568889999999999999999999999998887654 34556778888877777664 8889
Q ss_pred HHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC----
Q 013800 287 LTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP---- 354 (436)
Q Consensus 287 ~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---- 354 (436)
+..+.++..+. |.-.....++. .++...++++.|+.+.+.|+..+.
T Consensus 1035 l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle----------------------~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1035 LKSLNRALKLKLLSSGEDHPPTALSFINLE----------------------LLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred hhhHHHHHHhhccccCCCCCchhhhhhHHH----------------------HHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99998888763 33344445666 666677889999999999988642
Q ss_pred ----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 355 ----GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 355 ----~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
.....+..++++...+++ +..|+...+..+.+
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~d-fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKD-FRNALEHEKVTYGI 1128 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHH-HHHHHHHHhhHHHH
Confidence 234556667777777777 77777776666543
No 333
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.14 E-value=1.3 Score=40.12 Aligned_cols=96 Identities=21% Similarity=0.130 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCC--C----CHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDE----YPCH---PLLLRNYAQLLQKKGDLY-------RAEDYYNHATMADP--G----DGESWMQ 271 (436)
Q Consensus 212 g~~~~A~~~~~~al~~----~P~~---~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~p--~----~~~~~~~ 271 (436)
..+++|++.|.-|+-. ..+. +..+..+|.+|..+|+.+ .|.+.|.++++... . ...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 5678888888877652 2222 467889999999999854 45555555555432 1 2567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 013800 272 YAKLVWELHRDQHRALTYFERAALAAPQDS-NILAAYA 308 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~-~~~~~la 308 (436)
+|.+....|+ +++|..+|.+++....... ..+..++
T Consensus 171 igeL~rrlg~-~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 171 IGELNRRLGN-YDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHhCC-HHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 9999999985 9999999999998654433 4445555
No 334
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.07 E-value=0.12 Score=48.47 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY-AK 365 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~ 365 (436)
+-.|.++...-|+++..|..++ ..-.+.|-+.+.-..|.+++..+|.+++.|..- +.
T Consensus 93 ~f~~~R~tnkff~D~k~w~~y~----------------------~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~ 150 (435)
T COG5191 93 IFELYRSTNKFFNDPKIWSQYA----------------------AYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAF 150 (435)
T ss_pred eEeeehhhhcCCCCcHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccc
Confidence 3345566667788999998888 555667788889999999999999999999874 44
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 366 ~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
-+...++ ++.+...|.+++..+|+++.+|..+-..
T Consensus 151 e~~~~an-i~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 151 ELFEIAN-IESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred hhhhhcc-HHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 4556667 9999999999999999999888766544
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.96 E-value=3.8 Score=35.53 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=84.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 244 KKGDLYRAEDYYNHATMADPGD--GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
..+..++|+..|...-+..-.. ..+.+..|.+....+ +...|+..|..+-...|- +.....++.+-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kg-dta~AV~aFdeia~dt~~-P~~~rd~ARlraa-------- 139 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKG-DTAAAVAAFDEIAADTSI-PQIGRDLARLRAA-------- 139 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcc-cHHHHHHHHHHHhccCCC-cchhhHHHHHHHH--------
Confidence 4566777777777666554432 234455565555554 588888888877655432 2222222221111
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAI-LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.++...|-|++.....+..- ..+|--..+.-.||..-++.|+ +.+|...|.+... +...+....+.++
T Consensus 140 ---------~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd-~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 140 ---------YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD-FAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred ---------HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc-hHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 66677788887666554431 2244445677788888899999 9999999988766 4444555566665
Q ss_pred HHHH
Q 013800 401 FLWE 404 (436)
Q Consensus 401 ~~~~ 404 (436)
+...
T Consensus 209 ~mld 212 (221)
T COG4649 209 IMLD 212 (221)
T ss_pred HHHH
Confidence 5443
No 336
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=2.3 Score=41.69 Aligned_cols=139 Identities=11% Similarity=0.073 Sum_probs=106.5
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 243 QKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHR-----------DQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 243 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
...|.+ .++++.-.+.+..+|+...+|...-.++....- -+++-+.+.+.+++.+|+...+|+...
T Consensus 39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~-- 116 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK-- 116 (421)
T ss_pred HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH--
Confidence 344444 467777788888899887777654444332211 246678888999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD---HDKALCYFERAV 385 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d---~~~A~~~~~~al 385 (436)
+++.+.+ ++..=++.++++++.+|.+..+|...-.+......+ ..+-+++..+++
T Consensus 117 --------------------w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I 176 (421)
T KOG0529|consen 117 --------------------WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLI 176 (421)
T ss_pred --------------------HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHH
Confidence 5554443 578889999999999999999998887777666553 577788999999
Q ss_pred HhCCCCHHHHHHHHHHHH
Q 013800 386 QASPADSHVLAAYACFLW 403 (436)
Q Consensus 386 ~~~p~~~~~~~~la~~~~ 403 (436)
.-++.|-.+|.....++.
T Consensus 177 ~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 177 NDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred hccchhhhHHHHHHHHHH
Confidence 999999999988887766
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.91 E-value=0.15 Score=32.37 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777654
No 338
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.86 E-value=1.3 Score=36.58 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 337 GDLEGAEEYFSRAIL-ANPG-DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 337 g~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.+.++.+.+++..++ -.|. .-+..+.|+..+++.++ |+.++.+++..++..|++..+....-.+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke-Y~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE-YSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456778888888886 4443 35677888999999999 9999999999999999988766544333
No 339
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.80 E-value=2.2 Score=40.12 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
..++..++..+...|+ ++.++..+++.+..+|.+..+|..+..+|...|+...|+..|++...+
T Consensus 153 ~~~l~~lae~~~~~~~-~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGR-ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhccc-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567778888888899 999999999999999999999999999999999999999999988764
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.72 E-value=0.77 Score=37.91 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 357 GEIMSQYAKLVWELHH--DHDKALCYFERAVQ-ASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~--d~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.+..+++++++....+ |..+.+.+++..++ -.|.. -+.++.|+..++++++|++++.+.+..++..|++..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 6778888988876543 36788999999997 45543 367888999999999999999999999999999988765
No 341
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=7.4 Score=37.36 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALA----AP--QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------- 330 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------- 330 (436)
.+..+|+..++ |.+|+......++- +. .-.+++..-..++....+..+|...+..+-..
T Consensus 133 rli~Ly~d~~~-YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 133 RLIRLYNDTKR-YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 35556666654 77777776666542 21 12333444455555666666666655432222
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCC---CCHHH---HHHHHHHHHHhcCCHHHHHHHH--HHHHHhCCCCHHHHHH
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANP---GDGEI---MSQYAKLVWELHHDHDKALCYF--ERAVQASPADSHVLAA 397 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p---~~~~~---~~~la~~~~~~g~d~~~A~~~~--~~al~~~p~~~~~~~~ 397 (436)
.++..-.+|.-|..+|-+|++-.. ++..+ +-++-.+-..++. .++-...+ +.+++....+.++...
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~-~ddv~~lls~K~~l~y~g~~i~Amka 290 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL-PDDVAALLSAKLALKYAGRDIDAMKA 290 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC-HHHHHHHHhhHHHHhccCcchHHHHH
Confidence 445555788888888888887532 22333 3333334445555 55444433 4456666666788888
Q ss_pred HHHHHHH--CCChHHHHHHHHHHHhhCCC
Q 013800 398 YACFLWE--TEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 398 la~~~~~--~g~~~~A~~~~~~al~l~p~ 424 (436)
.+.++.+ +.+|+.|+..|+.-+..+|.
T Consensus 291 vAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 8877653 46788888888887777664
No 342
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.49 E-value=6.4 Score=36.60 Aligned_cols=176 Identities=9% Similarity=0.041 Sum_probs=106.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHc
Q 013800 245 KGDLYRAEDYYNHATMADPGDG----ESWMQYAKLVWELHRDQHRALTYFERAALAA-----PQD-SNILAAYACFLWEM 314 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~ 314 (436)
..+.++|+.-|++++++.++-. .++..+..+.+.+++ |++-...|++.+..- .+. ......+-......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~-~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGN-YKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3478899999999999988753 466777888888886 999888888876542 111 11112222222222
Q ss_pred cCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHH
Q 013800 315 EDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPG------------DGEIMSQYA 364 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la 364 (436)
.+.+--...|+..+.. .+|+..+.|.+-.+.+++.-..... -.++|..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 2222222222222222 6777778887777777666443211 123444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 365 KLVWELHHDHDKALCYFERAVQASPAD--SHVLA----AYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
.+|..+.+ ..+-...|++++.+...- +.+.- .=|..+.+.|++++|-..|-.|..-.
T Consensus 199 QmYT~qKn-NKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 199 QMYTEQKN-NKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhcc-cHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 66777777 677788899998775432 32222 22455788899999888777666543
No 343
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.40 E-value=0.86 Score=50.73 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=118.6
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Q 013800 235 LRNYAQLLQKKGDLYRAED------YYNHAT-MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQ 299 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~------~~~~al-~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~ 299 (436)
....+......|.+.+|.+ .+.+.. .+.|+....+..++.++...+ |+++|+..-.++.-+. |+
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~-d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG-DNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc-chHHHHHhcccceeeechhccCCCHH
Confidence 4455555566666766666 555332 347888899999999999987 5999999888886543 33
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc
Q 013800 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g 371 (436)
....+.+++ ...+..++...|...+.++..+ .|.-.....+++.++...+
T Consensus 1014 t~~~y~nla----------------------l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen 1014 TKLAYGNLA----------------------LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred HHHHhhHHH----------------------HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHH
Confidence 444555555 5556667777888888887765 4565667788999988888
Q ss_pred CCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 372 HDHDKALCYFERAVQASP-----A---DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+ ++.|+++++.|+...- . ....+..++.+...++++..|+...+..+.+
T Consensus 1072 e-~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1072 E-ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred H-HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9 9999999999998542 2 2356677788888888888888887777665
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.36 E-value=0.2 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
.++.++|.++..+|+ +++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGR-YEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-cchhhHHHHHHHHH
Confidence 355666666666666 66666666666654
No 345
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=5.4 Score=41.40 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
.++.+-|.-+++..+|..++++|...+..-|.| ......++.||..+.+ .+.|.++++.|-+.+|.++-....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHH
Confidence 345677888889999999999999999876654 5567788889999986 999999999999999999888888
Q ss_pred HHHHHHHccCchHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~ 328 (436)
+.......++-++|+..+....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 7766777777777777665433
No 346
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.73 Score=42.81 Aligned_cols=69 Identities=19% Similarity=0.037 Sum_probs=61.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|. +.-|+..+...++.-|+++.+-.....
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 778888999999999999999999999999999999999999 999999999999999998866554443
No 347
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.15 E-value=5.3 Score=34.67 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=92.4
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH--HHHHHHHHHHHHHc
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHP--LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DG--ESWMQYAKLVWELH 280 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~--~~~~~la~~~~~~~ 280 (436)
-+.+.+..++|+..|...-+..-... .+.+..|.+....|+...|+..|..+-...|- -. .+...-+.++...+
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 34455778899998888766543332 56678888999999999999999988765442 21 23344444555554
Q ss_pred CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 281 RDQHRALTYFERAA-LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 281 ~d~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
-|++-..-.+..- ..+|-...+.-.|| ..-++.|++.+|..+|.+... +..-+..
T Consensus 147 -sy~dV~srvepLa~d~n~mR~sArEALg----------------------lAa~kagd~a~A~~~F~qia~-Da~aprn 202 (221)
T COG4649 147 -SYDDVSSRVEPLAGDGNPMRHSAREALG----------------------LAAYKAGDFAKAKSWFVQIAN-DAQAPRN 202 (221)
T ss_pred -cHHHHHHHhhhccCCCChhHHHHHHHHh----------------------HHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence 4776665554432 22344555666777 777788999999999988776 4444555
Q ss_pred HHHHHHHHHH
Q 013800 360 MSQYAKLVWE 369 (436)
Q Consensus 360 ~~~la~~~~~ 369 (436)
..+.+.+...
T Consensus 203 irqRAq~mld 212 (221)
T COG4649 203 IRQRAQIMLD 212 (221)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 348
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.97 E-value=1.7 Score=38.15 Aligned_cols=88 Identities=14% Similarity=-0.010 Sum_probs=66.1
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA--DS----HVLAAYACF 401 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~--~~----~~~~~la~~ 401 (436)
..|.+.|++++|++.|.++.+.... -.+.+.++..+....++ +.....++.++-..-.. +. .....-|..
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d-~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~ 122 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD-WSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA 122 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 8888999999999999998776533 25678888889999999 99999999998765332 22 223444566
Q ss_pred HHHCCChHHHHHHHHHHH
Q 013800 402 LWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~al 419 (436)
+...++|.+|.+.|-.+.
T Consensus 123 ~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 123 NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHhchHHHHHHHHHccC
Confidence 777899999977665543
No 349
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.94 E-value=5.2 Score=42.71 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=125.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 220 YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 220 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
.+++.++..|.-..-|..+-......|..-.-...+++++.-.+.+...|..++..+-..-+-.+.+...+-++++..|-
T Consensus 300 ~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 300 KFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 34444555555556778888888889999999999999999999999999998854433222234555666667776666
Q ss_pred CHHHHHHHHHHHHHccCch-HHHHHHHHHHHH----------------------hHHHHcCCHHHHHHHHHHHHHh-CCC
Q 013800 300 DSNILAAYACFLWEMEDDG-EDDKAQEEHIQV----------------------LPIQSKGDLEGAEEYFSRAILA-NPG 355 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~----------------------~~~~~~g~~~~A~~~~~~al~~-~p~ 355 (436)
...+|...-..+.+-+... .-...+...+.. .+-.....|..|..+|...... --.
T Consensus 380 tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt 459 (881)
T KOG0128|consen 380 TGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDT 459 (881)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6555543332222222111 111111111111 1111223455566666655544 122
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-VLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
-...+..+|.+...+..+.+.|+.+....+...-.... .|.....+-...|+...+..++++++...
T Consensus 460 ~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 460 RTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 25667777888777666688888888777666555544 77778888888888888888888887653
No 350
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.81 E-value=5.7 Score=36.58 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+..+|.+..+.|+|++.+.++++++..+++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 344555555566666666666666655554
No 351
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.48 E-value=13 Score=41.34 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=76.9
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKK----G---DLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+.....|+.|+..|++...-.|... ++.+..|..+..+ | .+++|+.-|++. .-.|.-|--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHH
Confidence 366777889999999999999998765 6778888887643 3 356666666543 3467778888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
|..++ +|++-+++|.-|++..|+++..-.
T Consensus 562 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 562 YQRLG-EYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHhh-hHHHHHHHHHHHHHhcCCCCccHH
Confidence 88887 599999999999999999876543
No 352
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=9.2 Score=35.91 Aligned_cols=202 Identities=12% Similarity=0.045 Sum_probs=107.7
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhC----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEY----P----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~----P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
..+++-..+..++++|+..|.+.+... . +.......++.+|...|++..-.+.....-+. |...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~-------m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREA-------MEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH-------HHHhc
Confidence 344555666789999999999988752 1 22356789999999999887654444333221 11111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCchHHHHHHHHHHHH---hHHHHcCCHHHHHHHHH
Q 013800 274 KLVWELHRDQHRALTYFERAALAAPQ---DSNILAAYACFLWEMEDDGEDDKAQEEHIQV---LPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~g~~~~A~~~~~ 347 (436)
-.+..+..+..++.-|. +-+....+...+.+..+- +-...++..+.. .++++.|.|.+|+....
T Consensus 80 ---------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~r-Ekr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 80 ---------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADR-EKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred ---------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 12222333333333332 222111111111110000 001111111111 67778889998888877
Q ss_pred HHHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHH--HHHHHHHHHCCChHHHHHH
Q 013800 348 RAILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-----PADSHVL--AAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 348 ~al~~------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-----p~~~~~~--~~la~~~~~~g~~~~A~~~ 414 (436)
..+.- .+.-..++..-..+|....+ ..++...+..|-... |....+. ..-|..+....+|.-|..+
T Consensus 150 ~ll~ElKk~DDK~~Li~vhllESKvyh~irn-v~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SY 228 (421)
T COG5159 150 PLLHELKKYDDKINLITVHLLESKVYHEIRN-VSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSY 228 (421)
T ss_pred HHHHHHHhhcCccceeehhhhhHHHHHHHHh-hhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHH
Confidence 76543 23345667777778888777 777777776654432 2211221 1224445566677777777
Q ss_pred HHHHHhh
Q 013800 415 SDQFQQV 421 (436)
Q Consensus 415 ~~~al~l 421 (436)
|-.+++-
T Consensus 229 F~Ea~Eg 235 (421)
T COG5159 229 FIEALEG 235 (421)
T ss_pred HHHHHhc
Confidence 7777654
No 353
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.09 E-value=15 Score=37.32 Aligned_cols=171 Identities=8% Similarity=-0.022 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
.|-+..++..+-.++-..-+++-....+.+.+... ++..+++.++.+|...+ .++-...+++.++.+=++...-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en~--n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKENG--NEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhcC--chhhHHHHHHHHHhcchhHHHHHHH
Confidence 34444555555566655556666666777777654 56678889999988873 6888899999999999988888888
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------HHHHHHHHH
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI-------------------MSQYAKLVW 368 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------~~~la~~~~ 368 (436)
+..+.. ++..++...+.+++.. .....+...-.+.+.+..+.-+++.+. .+.--..++
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 866655 6777777777766543 112222223333444444444443332 222222233
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
...+++.+|++.+...++.+..+..+.-++...+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 444559999999999999999988888888777666
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.00 E-value=9.5 Score=45.52 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=99.7
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE---YP----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
+-|.+....-....+..+-+-.+++++-. +| .-.++|...|++....|+++.|..++-+|.+.. -+.+...
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E 1707 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLE 1707 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHH
Confidence 44555554444444455666666665432 32 345899999999999999999999999998877 6788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHH--HHHHHHccCchHHHHHHHHHHHHhHHHHcCC--H
Q 013800 272 YAKLVWELHRDQHRALTYFERAALAAPQD--------SNILAAY--ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD--L 339 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~--------~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~--~ 339 (436)
.|..+|..| |-..|+..+++.+..+-.+ +.....+ +.+....+ ......++ -
T Consensus 1708 ~AK~lW~~g-d~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~---------------~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1708 RAKLLWQTG-DELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT---------------KYLEESGNFES 1771 (2382)
T ss_pred HHHHHHhhc-cHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH---------------HHHHHhcchhH
Confidence 999999998 4999999999999765221 1111100 00111111 22223333 3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 340 EGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
.+-+++|+.+.++.|.....++.+|..|
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 4567888899999887777777777444
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.93 E-value=1.9 Score=32.07 Aligned_cols=58 Identities=7% Similarity=0.123 Sum_probs=42.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
-++... +.++|+..++++++..++..+-+..+|.+. .+|...|+|.+++.+..+-+++
T Consensus 15 kLY~~~-~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~-------------------qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 15 KLYHQN-ETQQALQKWRKALEKITDREDRFRVLGYLI-------------------QAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHhccc-hHHHHHHHHHHHHhhcCChHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 478888888888888888877777777655 7777888888887776655544
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.89 E-value=3.3 Score=40.78 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=65.2
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhC--------CC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEY--------PC-----HP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~--------P~-----~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
+...+++++|..|.--|+.++++- |. +. .+-..+..||+.+++.+-|+.+..+.|.++|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 346677888888888888888752 11 11 2234677888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
.-+...|.|+..+.+ |.+|...+.-+
T Consensus 263 rnHLrqAavfR~LeR-y~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLER-YSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 888888888877776 87777665544
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.13 E-value=7.6 Score=34.60 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHHHH
Q 013800 340 EGAEEYFSRAILA-NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA----DSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 340 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 412 (436)
++|...|.++-.. .-++++..+.||..|.+. |.++|+.++.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr--D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKR--DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455555443221 124677777777776643 378888888888887543 3678888888888888888773
No 358
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=1.1 Score=41.74 Aligned_cols=71 Identities=18% Similarity=0.045 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|..++. +.-|++.+...++..|+++.+-..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHHH
Confidence 33444556667777777777777777777777777777777777764 777777777777777776665443
No 359
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.87 E-value=0.93 Score=28.27 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 013800 234 LLRNYAQLLQKKGDLYRAEDY--YNHATMADP 263 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p 263 (436)
.++.+|..+..+|++++|+.. |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 345555555555555555555 224444443
No 360
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.82 E-value=14 Score=34.53 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=79.4
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
+.++|++|++++... +..+.+.|++.-|.+...-.++. .+.+.....++..++......-.
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 456777777766544 33344444444443333332222 22233333444444443322122
Q ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH----HHHHHHhCC
Q 013800 285 RALTYFERAALAA------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY----FSRAILANP 354 (436)
Q Consensus 285 ~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~----~~~al~~~p 354 (436)
+-....+++++-. -.++..+..+|..+++.+++..|..++ -.|.-..+... +.-..+..|
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf----------l~~~~~~~~~~~~ll~~~~~~~~~ 137 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF----------LLGTDPSAFAYVMLLEEWSTKGYP 137 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH----------HTS-HHHHHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH----------HhcCChhHHHHHHHHHHHHHhcCC
Confidence 2334444444432 247899999999999999887776655 34555444433 222334567
Q ss_pred CCHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHh
Q 013800 355 GDGEIMSQYAKLV-WELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 355 ~~~~~~~~la~~~-~~~g~d~~~A~~~~~~al~~ 387 (436)
.+.+.+...|.+. ...++ ...|...+...++.
T Consensus 138 ~e~dlfi~RaVL~yL~l~n-~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 138 SEADLFIARAVLQYLCLGN-LRDANELFDTFTSK 170 (260)
T ss_dssp --HHHHHHHHHHHHHHTTB-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence 7788887777664 45566 89999888776665
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.68 E-value=1 Score=34.84 Aligned_cols=55 Identities=22% Similarity=0.109 Sum_probs=39.1
Q ss_pred hhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPC---------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
.+.|+|.+|++.+.+.++.... ...++.++|.++...|++++|+..+++++.+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3558899998888887764321 134567778888888888888888888877643
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.58 E-value=2 Score=43.58 Aligned_cols=132 Identities=18% Similarity=0.061 Sum_probs=72.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchH
Q 013800 240 QLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 319 (436)
......++++++..... +-++-|.-+.-+.....-|.+..|-++.|+... .++...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~-~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA----------- 328 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIA-ASNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA----------- 328 (443)
T ss_dssp HHHHHTT-HHH-----H-HHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH-----------
T ss_pred HHHHHcCChhhhhhhhh-hhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH-----------
Confidence 34456788888877774 223334433443433333444444355555443 3455666555
Q ss_pred HHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCC
Q 013800 320 DDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--------SPAD 391 (436)
Q Consensus 320 A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~--------~p~~ 391 (436)
.+.|+++.|.+..++ .+++..|..||......|+ ++-|.++|+++-.. --.+
T Consensus 329 --------------l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~-~~lAe~c~~k~~d~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 329 --------------LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGN-IELAEECYQKAKDFSGLLLLYSSTGD 388 (443)
T ss_dssp --------------HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTB-HHHHHHHHHHCT-HHHHHHHHHHCT-
T ss_pred --------------HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcCccccHHHHHHhCC
Confidence 578999999776533 3578899999999999999 99999999885321 2333
Q ss_pred HHHHHHHHHHHHHCCChHHH
Q 013800 392 SHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A 411 (436)
...+..++......|+..-|
T Consensus 389 ~~~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 389 REKLSKLAKIAEERGDINIA 408 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHccCHHHH
Confidence 44445555555555555444
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.54 E-value=1.2 Score=34.55 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=44.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 333 IQSKGDLEGAEEYFSRAILANPG---------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
..+.|+|.+|++.+.+.+..... ...++.++|.+....|+ +++|+..+++++.+...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~-~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH-YEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH
Confidence 44679999998888888766322 13567889999999999 99999999999987543
No 364
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.29 E-value=9.4 Score=31.63 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+.....+.+++..+..++.++..+..+..+|.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 365
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.25 E-value=16 Score=34.20 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=104.7
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC------CCCHHHHH
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLY-RAEDYYNHATMAD------PGDGESWM 270 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~------p~~~~~~~ 270 (436)
.-+..+.+.|++.-|.++..-.++. .+.+.....+++.++...+.-+ +-..+.+++++-. -.++..+.
T Consensus 15 ~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~ 94 (260)
T PF04190_consen 15 SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHH 94 (260)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHH
T ss_pred HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHH
Confidence 3445667778887776666555542 2344555567777777655332 2334444444432 24789999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILA--AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
.+|..+++.+. +.+|..+|-.. +++.... .+.......|...+..-.+.+++ ..|...++...|...+..
T Consensus 95 ~~a~~~~~e~~-~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV--L~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 95 LLAEKLWKEGN-YYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEADLFIARAV--LQYLCLGNLRDANELFDT 166 (260)
T ss_dssp HHHHHHHHTT--HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH--HHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHhhcc-HHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcchhHHHHHHH--HHHHHhcCHHHHHHHHHH
Confidence 99999999875 99999888543 2222222 23333344555556655555655 778888999999887776
Q ss_pred HHHh----CC----------CCHHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 349 AILA----NP----------GDGEIMSQYAKLV--WELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 349 al~~----~p----------~~~~~~~~la~~~--~~~g~--d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
-++. +| .....++.+-.++ ++.++ -|..-.+.|+..|+.+|.....+..+|..|+....
T Consensus 167 f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 167 FTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 6655 33 2222222222222 22222 02233334444455667777788888888887553
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.95 E-value=17 Score=35.92 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=12.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
++..-+++|..|.+++-+|+...|+
T Consensus 255 rIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 255 RIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hHHHhhcchhHHHHHHHHHHHhCcc
Confidence 4444444455555555555544444
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.90 E-value=2.3 Score=31.62 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=39.2
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHH
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNY---AQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~ 260 (436)
+..|.-++...+.++|+..++++++..++....+..+ ..+|...|+|.+.+++..+-+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666788888888888888777666544444 4456677777777776655444
No 368
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=89.78 E-value=12 Score=32.72 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=72.8
Q ss_pred hhhhhhHhhhh-hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 198 DDAGEVVDLIM-PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQ-----KKGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
+.+...+|..+ .-+.+|++|...|+.-.+.+. .+..-+.+|..++ ..++...|++.+..+.. -+.+.+...
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~ 110 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRY 110 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhh
Confidence 34444455433 234678888888888776664 5556667776665 35678999999998876 567888888
Q ss_pred HHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 272 YAKLVWELHR------DQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 272 la~~~~~~~~------d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|.+++.-.. |..+|+.++.++..+. +..+.+.|.
T Consensus 111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS 151 (248)
T KOG4014|consen 111 LGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLS 151 (248)
T ss_pred hhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHH
Confidence 8877765321 3678999999987764 445555555
No 369
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.74 E-value=0.45 Score=27.13 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
+.+.+|.++...|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666666666666666666554
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.63 E-value=14 Score=33.03 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=55.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 277 WELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
|...+ -++|...|-++-... -++++..+.+| . |+...+.++|+..+.+++++.+.
T Consensus 117 Wsr~~-d~~A~~~fL~~E~~~~l~t~elq~aLA----------------------t-yY~krD~~Kt~~ll~~~L~l~~~ 172 (203)
T PF11207_consen 117 WSRFG-DQEALRRFLQLEGTPELETAELQYALA----------------------T-YYTKRDPEKTIQLLLRALELSNP 172 (203)
T ss_pred hhccC-cHHHHHHHHHHcCCCCCCCHHHHHHHH----------------------H-HHHccCHHHHHHHHHHHHHhcCC
Confidence 33334 366666665543322 14677777777 3 33468999999999999998543
Q ss_pred ----CHHHHHHHHHHHHHhcCCHHHHH
Q 013800 356 ----DGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 356 ----~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
+++++..|+.++..+|+ ++.|-
T Consensus 173 ~~~~n~eil~sLas~~~~~~~-~e~AY 198 (203)
T PF11207_consen 173 DDNFNPEILKSLASIYQKLKN-YEQAY 198 (203)
T ss_pred CCCCCHHHHHHHHHHHHHhcc-hhhhh
Confidence 58999999999999999 88774
No 371
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.14 E-value=2.5 Score=39.80 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=52.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
..+...|+++.+++.+++.+..+|.+-..|..+..+|...|+ ...|+..|++.-..
T Consensus 161 e~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y~~l~~~ 216 (280)
T COG3629 161 EALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR-QSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC-chHHHHHHHHHHHH
Confidence 777889999999999999999999999999999999999999 99999999987663
No 372
>PRK12798 chemotaxis protein; Reviewed
Probab=89.13 E-value=25 Score=34.92 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=58.8
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 222 KRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 222 ~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
+..+..++. +.+.-...|..-+-.|+-.+|.+.+...-.. .|.....+..|.........|..+|+..|+.+--+.|.
T Consensus 101 r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPG 180 (421)
T PRK12798 101 RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPG 180 (421)
T ss_pred HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCc
Confidence 344444432 4455566666777788888888777654322 23333344444444444445688888888888888876
Q ss_pred C---HHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013800 300 D---SNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 300 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
- ..++..-..+....|+.++...+..+|+..
T Consensus 181 TLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR 214 (421)
T PRK12798 181 TLVEEAALRRSLFIAAQLGDADKFEALARNYLRR 214 (421)
T ss_pred hHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH
Confidence 3 223333332334444444444444444433
No 373
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.79 E-value=12 Score=41.47 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCH
Q 013800 283 QHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~ 357 (436)
|++|+..|++...--|.. .++.+..|..+... +-...+ .+++|+.-|++. .-.|.-|
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 552 (932)
T PRK13184 491 YDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEK-----------------ASEQGDPRDFTQALSEFSYL-HGGVGAP 552 (932)
T ss_pred HHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHH-----------------HHhcCChHHHHHHHHHHHHh-cCCCCCc
Confidence 666666666666666553 34445555444331 111111 455555555543 2234445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
--|...|.+|..+|+ +++-+++|..|++..|.++
T Consensus 553 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 553 LEYLGKALVYQRLGE-YNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred hHHHhHHHHHHHhhh-HHHHHHHHHHHHHhcCCCC
Confidence 556666666666666 7777777777777666665
No 374
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.69 E-value=1.6 Score=41.04 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
|+.+|.+|+.+.|++...|..+|.++...|+.=.|+-+|-|++....-.+.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997655567788888877655
No 375
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.55 E-value=1.8 Score=26.98 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCY--FERAVQASPA 390 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~--~~~al~~~p~ 390 (436)
+.++.+|..+...|+ +++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~k-y~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGK-YDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhccc
Confidence 345556666666666 6666666 3355555443
No 376
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.27 E-value=21 Score=37.37 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=33.4
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
..|..+++-....=+++-|.+.|.+.-.+ ....+ --..+|.++...|++.+|...|.+
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35777777766667777777777665321 11111 123456666666666666666654
No 377
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.09 E-value=0.64 Score=26.49 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHH
Q 013800 394 VLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~ 415 (436)
+...+|.++...|+.++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555554444
No 378
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.09 E-value=7.4 Score=38.46 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-G-----D-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-----~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
+...+..+..-...|++..|+++..+.-.+.. . + ..+.-.+..||..+++ .+-|+..-.+.|.++|..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk-pdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK-PDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC-CchHHHHHhhhhhcCcch
Confidence 33344444444455555555555555544321 1 1 1233456666666654 677777777777777776
Q ss_pred HHHHHHHHHHHHHccCchHHHHH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKA 323 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~ 323 (436)
..-+...+.+...+.++.+|.+-
T Consensus 262 frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555543
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.99 E-value=5 Score=36.18 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=54.9
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
.+.+.+..++|+...+.-++.+|.+......+-.++...|+|++|...++-+-++.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 355668899999999999999999999999999999999999999999999999999863
No 380
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.89 E-value=1.8 Score=40.64 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
|+.+|.+|+.+.|.+...++.+|.+....|+ .-.|+-+|-+++-...-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~-~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD-DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT--HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6889999999999999999999999999988 8999999999987655557888888888777
No 381
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.87 E-value=1 Score=28.52 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
++..+|.+-...++|++|+..|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.86 E-value=8.6 Score=36.20 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 416 (436)
.+..+...|. +.+|+++.++++.++|-+...+..+..++..+|+.-.+.+.|+
T Consensus 285 va~~yle~g~-~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 285 VARAYLEAGK-PNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 3334444444 4555555555555554444444444444444554444444443
No 383
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.67 E-value=5.2 Score=41.27 Aligned_cols=95 Identities=18% Similarity=0.031 Sum_probs=59.8
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH--
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--------PADSHVLAAYAC-- 400 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--------p~~~~~~~~la~-- 400 (436)
.+..+.|+++.|..+..++ ++..-|..||.+....++ +..|.++|.++.... -.+.+.+..+|.
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~-l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGE-LPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhccc-chhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHH
Confidence 5556778888886655443 556778888888888888 888888888875431 233333333333
Q ss_pred -----------HHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhc
Q 013800 401 -----------FLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVY 435 (436)
Q Consensus 401 -----------~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~an~y 435 (436)
+++..|+++++++.+..... +++++..|..|
T Consensus 719 ~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r----~peAal~ArtY 760 (794)
T KOG0276|consen 719 KKQGKNNLAFLAYFLSGDYEECLELLISTQR----LPEAALFARTY 760 (794)
T ss_pred HhhcccchHHHHHHHcCCHHHHHHHHHhcCc----CcHHHHHHhhh
Confidence 36677777777666554433 34555544444
No 384
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=31 Score=34.15 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
+..++.+|.+..-+++ |..|.++|-+|+...|.
T Consensus 247 ARY~yY~GrIkaiqld-YssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLD-YSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhHHHhhcc-hhHHHHHHHHHHHhCcc
Confidence 4444445555444444 55555555555544443
No 385
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.80 E-value=1.8 Score=45.57 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCC-CH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG------DGESWMQYAKLVW--ELHRDQHRALTYFERAALAAPQ-DS 301 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~--~~~~d~~~A~~~~~~al~~~p~-~~ 301 (436)
+++...++-..|....+|+.-++..+..-.+ |+ ...+.+.++.++- ...||-++|+...-.+++.... .+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3567778888888888998877776654333 32 1222233333332 3345678888888888887643 44
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
+.+..-|.+|.+.--. .-|...+..+.|+++|++|++..|. ...-.+++.++...|+.|+...++=
T Consensus 279 Dm~Cl~GRIYKDmF~~-------------S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~aaG~~Fens~Elq 344 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIA-------------SNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLRAAGEHFENSLELQ 344 (1226)
T ss_pred ceeeeechhhhhhhhc-------------cCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHHHhhhhccchHHHH
Confidence 4444445333221000 2234456778999999999999997 3445677888888887676666665
Q ss_pred HHHHHhCC-----CC---HHHHHHHHHH---HHHCCChHHHHHHHHHHHhhC-CCChhHHh
Q 013800 382 ERAVQASP-----AD---SHVLAAYACF---LWETEEDEDDSKSSDQFQQVA-PIRQGAVT 430 (436)
Q Consensus 382 ~~al~~~p-----~~---~~~~~~la~~---~~~~g~~~~A~~~~~~al~l~-p~~~~a~~ 430 (436)
.-.+.++. .. -..|+..|.. -.-.+++.+|++.-++...+. |.+....+
T Consensus 345 ~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 345 QIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKST 405 (1226)
T ss_pred HHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence 55555431 11 1223333322 223578999999999988885 55555444
No 386
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.28 E-value=17 Score=33.74 Aligned_cols=80 Identities=19% Similarity=0.062 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCC
Q 013800 339 LEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETE 406 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g 406 (436)
....++++.+|+..... -..+...+|.-|+..|+ +++|+++|+.+....... ..++..+..|...+|
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~-~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGD-YDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34456666666655332 13456789999999999 999999999997654332 267788889999999
Q ss_pred ChHHHHHHHHHHH
Q 013800 407 EDEDDSKSSDQFQ 419 (436)
Q Consensus 407 ~~~~A~~~~~~al 419 (436)
+.++.+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9998877655443
No 387
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=9.7 Score=40.85 Aligned_cols=29 Identities=31% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
.++..+|..++.+|++++|..+|-+++..
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 67889999999999999999999998864
No 388
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.29 E-value=13 Score=38.93 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=56.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 294 ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 294 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
-+++..+.+.+..++..+.....+.-|.+++...-.. .++...++|.+|....++.=+.- +.+++-.|+.+..
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAE 816 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhh
Confidence 3444555566666666666666666666666543322 66667788888877655432222 3467777877777
Q ss_pred hcCCHHHHHHHHHHH
Q 013800 370 LHHDHDKALCYFERA 384 (436)
Q Consensus 370 ~g~d~~~A~~~~~~a 384 (436)
..+ +++|.+.|.+|
T Consensus 817 ~Dr-FeEAqkAfhkA 830 (1081)
T KOG1538|consen 817 NDR-FEEAQKAFHKA 830 (1081)
T ss_pred hhh-HHHHHHHHHHh
Confidence 777 88887777665
No 389
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.21 E-value=2.7 Score=24.50 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 248 LYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
++.|...|++++...|..+.+|..+
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3344444444444444444444433
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.70 E-value=25 Score=34.88 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE--SWMQY--AKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
.....+..++..++|..|...+......-|.... .+..+ |..+|..- ++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-DHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 3455666777888888888888887775333322 33333 33334444 477777777776654
No 391
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.35 E-value=2 Score=27.11 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
++..||.+-...++ |++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~-f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENEN-FEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence 34445555555555 55555555555543
No 392
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.03 E-value=14 Score=38.24 Aligned_cols=93 Identities=22% Similarity=0.121 Sum_probs=55.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Q 013800 241 LLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLW 312 (436)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~ 312 (436)
+..+.|+++.|.....+ .++..-|..||.+....+. +..|.+||.++..+. -.+.+.+..+|....
T Consensus 646 lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~-l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE-LPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc-chhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 44566777777665443 3566778888888777764 899999998875542 223333444443333
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
+.|...-|. .+|...|+++++.+.+..
T Consensus 720 ~~g~~N~AF---------~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 720 KQGKNNLAF---------LAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhcccchHH---------HHHHHcCCHHHHHHHHHh
Confidence 333221111 566677777777666544
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.97 E-value=3.4 Score=24.06 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL 242 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 242 (436)
|+.+.|..+|++++...|....+|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678999999999999999999998887653
No 394
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.73 E-value=30 Score=30.44 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 230 CHPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL-H---RDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 230 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~---~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
..++.-..||..+. -+.++++|..+|+.-..-+ ..+...+.+|..++.- + +++..|++.|+.+.. .+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 45566667777664 4677888888887654433 2456667777544321 1 257899999998876 5678888
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------c
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD--LEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----------H 371 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g 371 (436)
..++.++|.-... +.++ ..+|.+++.++-.+. +..+.++|...++.- |
T Consensus 109 ~~~gLl~~~g~~~-----------------r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g 169 (248)
T KOG4014|consen 109 RYLGLLHWNGEKD-----------------RKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEG 169 (248)
T ss_pred hhhhhhhccCcCC-----------------ccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCC
Confidence 8888666553321 1233 677888888876543 345555555444332 1
Q ss_pred ------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CChHHHHHHHHHHHhh
Q 013800 372 ------------HDHDKALCYFERAVQASPADSHVLAAYACFLWET----EEDEDDSKSSDQFQQV 421 (436)
Q Consensus 372 ------------~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~l 421 (436)
+|.+.|.++--+|-+++ ++.+..++.+.|..- .+.++|..+-++++++
T Consensus 170 ~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 170 KPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred CCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 12566666666666554 467777777766432 2567788888888876
No 395
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.41 E-value=24 Score=34.98 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=46.8
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP--LLLRNYAQLLQ--KKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~la~~~~--~~g~~~~A~~~~~~al~~ 261 (436)
........+++.++|..|...+..+...-|... ..+..+...|. ..-++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345566678899999999999999998633333 45556655554 678899999999998775
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.00 E-value=4.7 Score=37.87 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHH--hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 319 EDDKAQEEHIQV--LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 319 ~A~~~~~~~~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.+..++...+-. ..|...|.+.+|+++.++++.++|-+...+..+..++..+|+ --.|++.|++.-
T Consensus 273 rle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD-~is~~khyerya 340 (361)
T COG3947 273 RLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD-EISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc-chhhhhHHHHHH
Confidence 333444433333 788899999999999999999999999999999999999999 788888887753
No 397
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.98 E-value=11 Score=37.60 Aligned_cols=61 Identities=8% Similarity=-0.117 Sum_probs=47.5
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMID--------EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+.+++-.++.-+|||..|++.++..-- ..+-+...++..|-+|+.+++|.+|+..|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788999999999998775311 1233456789999999999999999999998864
No 398
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=82.36 E-value=42 Score=31.08 Aligned_cols=56 Identities=5% Similarity=-0.066 Sum_probs=35.7
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDE-YP--CHPLLLRNYAQLLQ-KKGDLYRAEDYYNH 257 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~-~P--~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 257 (436)
..++.+..+.++|++.+.+.+++++. +| -+.+-...+..+|- ..|....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 44566677778888888888877776 43 23445555555554 35666666666665
No 399
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.31 E-value=57 Score=41.04 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC---HHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD---LEGA 342 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~---~~~A 342 (436)
++.+...|..+.+.++ .++|-..|..|++++..-+.+|..+|..+.. +.....++ -..|
T Consensus 2812 aeff~lkG~f~~kL~~-~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~-----------------~f~~e~~ni~~a~~a 2873 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGK-FEEANKAFSAAVQIDDGLGKAWAEWGKYLDN-----------------RFNKEPVNISFACNA 2873 (3550)
T ss_pred HHHHHhhhHHHHHhcC-cchhHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------------HHhccCcccHHHHHH
Confidence 5667778888888875 9999999999999998889999888865543 22222222 2456
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
+.+|-+|....- +..+.-.++.+++-+. +++|...+.+++...
T Consensus 2874 vsCyLqA~~~~~-~skaRk~iakvLwLls--~dda~~~l~~~~~k~ 2916 (3550)
T KOG0889|consen 2874 VSCYLQAARLYN-SSKARKLIAKVLWLLS--FDDSLGTLGDVFDKF 2916 (3550)
T ss_pred HHHHHHHhcccc-chhhHHHHHHHHHHHH--hccccchHHHHHHHh
Confidence 666767665542 3566667777777662 455555555555544
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.72 E-value=32 Score=31.17 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
...+. .++|+...+.-++..|.+......+. .++.-.|+|++|...++-+-++.|++
T Consensus 12 L~~~s-L~dai~~a~~qVkakPtda~~Rhflf----------------------qLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNS-LQDAIGLARDQVKAKPTDAGGRHFLF----------------------QLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhcc-HHHHHHHHHHHHhcCCccccchhHHH----------------------HHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34443 89999999999999999998888888 77788899999999999999998875
Q ss_pred H
Q 013800 357 G 357 (436)
Q Consensus 357 ~ 357 (436)
.
T Consensus 69 t 69 (273)
T COG4455 69 T 69 (273)
T ss_pred c
Confidence 3
No 401
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.80 E-value=42 Score=37.70 Aligned_cols=46 Identities=24% Similarity=0.112 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHH
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~ 347 (436)
..+..+|..+.....+++|.-.|+.+-+. .+|...|+|.+|+....
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHH
Confidence 34556777777777777777666643322 55666666666665544
No 402
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=79.29 E-value=56 Score=31.65 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=99.8
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDE----YP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGD-GESWM 270 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~----~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~ 270 (436)
+..+|+..++|.+|+.+....+.. +. .-.+++..-..+|+...+..+|...+..|-.. .|.- +..-.
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 345788889999999888776652 22 22366777788888889998888888776543 2322 22223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH--
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAP---QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY-- 345 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~-- 345 (436)
.-|.++... +||.-|..+|-.|++-.. ++..+...|-..+ .+-...+..++-...
T Consensus 214 qSGIlha~e-kDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMl-------------------LcKIMln~~ddv~~lls 273 (411)
T KOG1463|consen 214 QSGILHAAE-KDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYML-------------------LCKIMLNLPDDVAALLS 273 (411)
T ss_pred hccceeecc-cccchHHHHHHHHHccccccCCcHHHHHHHHHHH-------------------HHHHHhcCHHHHHHHHh
Confidence 334333343 679999999988887532 2344443332211 333334555543333
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~--~g~d~~~A~~~~~~al~~~p~ 390 (436)
-+.+++....+.+++...+.++.. +.+ |..|+..|..=+..+|-
T Consensus 274 ~K~~l~y~g~~i~AmkavAeA~~nRSLkd-F~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 274 AKLALKYAGRDIDAMKAVAEAFGNRSLKD-FEKALADYKKELAEDPI 319 (411)
T ss_pred hHHHHhccCcchHHHHHHHHHhcCCcHHH-HHHHHHHhHHHHhcChH
Confidence 344556666667777777777643 234 77777777776655543
No 403
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=78.55 E-value=77 Score=31.85 Aligned_cols=97 Identities=14% Similarity=0.004 Sum_probs=54.2
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC---
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGDL-------YRAEDYYNHATMAD--- 262 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~--- 262 (436)
.....+|...+..++|+-|...|+.+.+..-.+. .+.-..|.+++..+.. ++...+++.|+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 4566789999999999999999999988554221 2223344444444422 23334444433211
Q ss_pred -------C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 263 -------P-GDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 263 -------p-~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+ --.......+.++...++ +.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~-~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGG-YWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHH
Confidence 1 122334444555545544 66666665555544
No 404
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=78.30 E-value=2.4 Score=40.76 Aligned_cols=106 Identities=17% Similarity=0.046 Sum_probs=85.1
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhC-----------CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEY-----------PC--------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~-----------P~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
..|+..++.+++..|..-|.+++..- ++ -...+.+++.+-+..+.+..|+..-.-+++.++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 35566788888888888888876521 11 113456778888899999999998888888888
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
....+++.++..+....+ +++|++.++.+....|++......+..
T Consensus 307 s~tka~~Rr~~~~~~~~~-~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKN-YDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred hhCcHHHHHHhHHHhhhc-hhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 899999999999888875 999999999999999999887766663
No 405
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.79 E-value=1e+02 Score=32.95 Aligned_cols=205 Identities=11% Similarity=0.029 Sum_probs=100.0
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
++.......+.+.|...+.+......-.. .++..+|.-....+...+|..++..+.....++ ..+.....+....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~-~~~e~r~r~Al~~ 325 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST-SLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc-HHHHHHHHHHHHc
Confidence 34444455666777777776544443222 223333333333322556666666554332221 2222222222233
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------hHHHHcCCHHH---H-HHHHHHH
Q 013800 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------LPIQSKGDLEG---A-EEYFSRA 349 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~g~~~~---A-~~~~~~a 349 (436)
+ |++.+...+...-..........+.+|..+...|+.++|...+++.... ....++|..-. . ...-...
T Consensus 326 ~-dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 326 G-DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred c-CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhh
Confidence 3 4666666665543333345566677776666666666666666543221 11111121100 0 0000000
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
+ +. ......+..+...|. ...|...+..++.. .+..-...++.+....|.++.++....++
T Consensus 405 ~---~~--~~~~~ra~~L~~~g~-~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 405 L---TQ--GPEMARVRELMYWNM-DNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred h---cc--ChHHHHHHHHHHCCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 00 123445666777777 77787777776664 23455666777777777777777666543
No 406
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=77.16 E-value=1.1e+02 Score=33.08 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=19.6
Q ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 386 QASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 386 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+..|.-..-|..+.......|+.-.-...++++..-
T Consensus 306 q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 306 QKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 333433345555666666666665555555555543
No 407
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.72 E-value=96 Score=31.94 Aligned_cols=190 Identities=15% Similarity=0.090 Sum_probs=113.9
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA-KLVW 277 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~ 277 (436)
....+.++...|+.+.|+..++..+...-. ....++.+|.++.-+.+|..|-..+......+.-..-.|.-++ .|+.
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 344555666667788899999988881111 2246778899999999999999999888877665544444444 3332
Q ss_pred HH-------cCCHHHHHHHHHHH---HHhCCCC------------------------HHH--HHHHHHHHHHccCc--hH
Q 013800 278 EL-------HRDQHRALTYFERA---ALAAPQD------------------------SNI--LAAYACFLWEMEDD--GE 319 (436)
Q Consensus 278 ~~-------~~d~~~A~~~~~~a---l~~~p~~------------------------~~~--~~~la~~~~~~g~~--~~ 319 (436)
.. +++-++|..+++.. +...|.+ ..+ ++.++.++...... .+
T Consensus 350 ~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~ 429 (546)
T KOG3783|consen 350 QNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNE 429 (546)
T ss_pred ccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhh
Confidence 11 11233333333222 2221111 011 12222222111111 11
Q ss_pred HH----------------HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHhcCCHHH
Q 013800 320 DD----------------KAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN---P----GDGEIMSQYAKLVWELHHDHDK 376 (436)
Q Consensus 320 A~----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~d~~~ 376 (436)
.. ..+...++..++..+|+...|..+|+.+++.. . -.|.+++.+|.+++.+++-..+
T Consensus 430 l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e 509 (546)
T KOG3783|consen 430 LEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKE 509 (546)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHH
Confidence 11 11112222288889999999999999998431 1 1367999999999998876899
Q ss_pred HHHHHHHHHHhCCC
Q 013800 377 ALCYFERAVQASPA 390 (436)
Q Consensus 377 A~~~~~~al~~~p~ 390 (436)
+..++.+|-+...+
T Consensus 510 ~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 510 ARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999887655
No 408
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.22 E-value=36 Score=31.97 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCCHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK--------KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL-HRDQHR 285 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~d~~~ 285 (436)
..|++.=...+..+|....+|...-.+... .--++.-+.++..+++-+|++-.+|...-.++-.. ...+..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 457777777778888776666655555443 22246678889999999999999999888776544 123778
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--
Q 013800 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY-- 363 (436)
Q Consensus 286 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-- 363 (436)
-+...++.++.|+.+-..|...-.++... .-...-.++.+-.++-..++..++.|..+|...
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~i----------------e~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~ 192 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTI----------------EDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYI 192 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecc----------------hhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHH
Confidence 88889999999999888775433222110 111222334444666677788899999998877
Q ss_pred -HHHHHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 364 -AKLVWELHHD-----HDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 364 -a~~~~~~g~d-----~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
-...+..|+- +++-+++.-.++-.+|++..+|..+-.+
T Consensus 193 ~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 193 WIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 3333334430 3455566666777789988777665544
No 409
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.15 E-value=26 Score=37.39 Aligned_cols=134 Identities=12% Similarity=0.046 Sum_probs=76.8
Q ss_pred hCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYP-CHPLLLRNYAQLLQK---------KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
+-|+-++|+...-.+++... -.++.+..-|.+|.. .+..+.|+.+|+++.+..|.... -.+++.++...
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aa 333 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAA 333 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHh
Confidence 34888889888888887653 344666666666643 35567889999999998886432 23455555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
|..|+...++-+-.+. |..++.+.|..++-..+++-..-..+-.-.+++.+|+..-+..+++.|-
T Consensus 334 G~~Fens~Elq~Igmk-----------Ln~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 334 GEHFENSLELQQIGMK-----------LNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhhccchHHHHHHHHH-----------HHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 5545554444333333 3333333333333222222111112333456777777777777777665
No 410
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=75.87 E-value=92 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.014 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 262 (436)
.....+|.+++..++|+-|...|+.+.+-.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 345789999999999999999999887744
No 411
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.80 E-value=7 Score=25.56 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
+.||.+|..+|+ .+.|...++..+
T Consensus 3 LdLA~ayie~Gd-~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGD-LEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCC-hHHHHHHHHHHH
Confidence 455666666666 666666666655
No 412
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.56 E-value=6.4 Score=25.76 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+.+|.+|...|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888774
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.49 E-value=12 Score=33.20 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+..+..++..++.+...| ++.++.+++.++...|+.++|.....++..+.|.
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445566677778888888 7888999999999999999999999999999983
No 414
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=74.58 E-value=45 Score=31.47 Aligned_cols=113 Identities=10% Similarity=-0.040 Sum_probs=71.9
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQL---LQKKGDL----YRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~---~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
.+...++|++-.+.|.+......+ ..+..+..+.. ++..... ..-.+.++.-++..|+...++..+|..+.
T Consensus 9 ~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~ 88 (277)
T PF13226_consen 9 ELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWV 88 (277)
T ss_pred HHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 455668888888888777654322 11111111111 1111111 23566777777888888888887777665
Q ss_pred HHcC---------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchH
Q 013800 278 ELHR---------------------DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 278 ~~~~---------------------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 319 (436)
.... -.+.|...+.+|++++|....+...+..+-...|..+=
T Consensus 89 ~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~W 151 (277)
T PF13226_consen 89 HRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDW 151 (277)
T ss_pred HHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchH
Confidence 4321 12678999999999999999999888877777776653
No 415
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=73.50 E-value=4.2 Score=39.16 Aligned_cols=79 Identities=8% Similarity=-0.048 Sum_probs=67.6
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
..+.+++.+....+.+..|+..-..++..++....+++.++..+....++++|++.+..+....|.+..+...+..+-.
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 3445577788888899999888888888888888999999999999999999999999999999999888776665533
No 416
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.54 E-value=19 Score=30.25 Aligned_cols=50 Identities=24% Similarity=0.213 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
-.+.....+...+..|++.-|.++...++..+|++..+...++.++..++
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45666777888888888888888888888888888888888888777665
No 417
>PF12854 PPR_1: PPR repeat
Probab=72.37 E-value=8.7 Score=23.32 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
...|..+-..+.+.|+ .++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~-~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGR-VDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCC-HHHHHHHHHh
Confidence 6677778888888888 8888887765
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.49 E-value=17 Score=32.09 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
..++..++.++..|+ +.++.+++.++...|+ .++|...++++..+.|
T Consensus 129 ~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~-~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRPD-PNVYQRYALALALLGD-PEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC
Confidence 334444444555553 5555555555555555 5555555555555555
No 419
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=70.28 E-value=26 Score=29.11 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.++..+|.-++-.+.++...+...-++.++..+|.+|.+.|+..+|.+.+.+|.+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 420
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.12 E-value=1.6e+02 Score=31.58 Aligned_cols=88 Identities=9% Similarity=0.046 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
..+|..++..+.... .+...+-....+....++ ++.+...+...-..........+.+|.++..+|+.++|...|+++
T Consensus 295 ~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~d-w~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhccccc-CCcHHHHHHHHHHHHccC-HHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555543322 223334444444456666 777666666643333345567788888888888888888888887
Q ss_pred HhhCCCChhHH
Q 013800 419 QQVAPIRQGAV 429 (436)
Q Consensus 419 l~l~p~~~~a~ 429 (436)
.. ...|.+-.
T Consensus 373 a~-~~~fYG~L 382 (644)
T PRK11619 373 MQ-QRGFYPMV 382 (644)
T ss_pred hc-CCCcHHHH
Confidence 54 56666543
No 421
>PF13041 PPR_2: PPR repeat family
Probab=69.94 E-value=25 Score=23.11 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
...|+.+-..+.+.|+ +++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~-~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGK-FEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcC-HHHHHHHHHHHHHc
Confidence 4566777777777777 77777777777654
No 422
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=69.72 E-value=76 Score=31.42 Aligned_cols=53 Identities=13% Similarity=-0.009 Sum_probs=39.4
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPC-----HPLLLRNYAQLLQ--KKGDLYRAEDYYNH 257 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~-----~~~~~~~la~~~~--~~g~~~~A~~~~~~ 257 (436)
...+++.++|..|...|.+++...+. ....+..+..+|. ..-++++|.+.+++
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34667889999999999999987542 2345566666665 57788999999986
No 423
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.19 E-value=1e+02 Score=29.08 Aligned_cols=168 Identities=10% Similarity=0.032 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 236 RNYAQLLQKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWE-------LHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 236 ~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
..+.....+..++ ..|++.-...+..+|..-.+|.-.-.+... ...-++.-+..+..+++.+|.+-..|...
T Consensus 35 ~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR 114 (328)
T COG5536 35 MGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHR 114 (328)
T ss_pred HHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHH
Confidence 3444444444444 356666666666777776666655555443 11114566788899999999998888766
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHhcCCHHHHHHHH
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV------WELHHDHDKALCYF 381 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~d~~~A~~~~ 381 (436)
-.++. .....+|..-....++.++.++.|.-+|...-.++ ..... +..-.++-
T Consensus 115 ~~~Le--------------------~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~-~k~e~eyt 173 (328)
T COG5536 115 QWMLE--------------------LFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSD-LKHELEYT 173 (328)
T ss_pred HHHHH--------------------hCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchh-HHHHHHhH
Confidence 63221 11225588888889999999999988887766665 22223 44455666
Q ss_pred HHHHHhCCCCHHHHHHH---HHHHHHCCCh------HHHHHHHHHHHhhCCC
Q 013800 382 ERAVQASPADSHVLAAY---ACFLWETEED------EDDSKSSDQFQQVAPI 424 (436)
Q Consensus 382 ~~al~~~p~~~~~~~~l---a~~~~~~g~~------~~A~~~~~~al~l~p~ 424 (436)
..++..++.+..+|... -...+..|++ ++-+++...+.-..|.
T Consensus 174 t~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~ 225 (328)
T COG5536 174 TSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPD 225 (328)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCcc
Confidence 66778899999888776 3344445543 3334444444444444
No 424
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=69.10 E-value=95 Score=28.54 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHH-HCCChHHHHHHHHHHHhh
Q 013800 374 HDKALCYFERAVQ-----ASPADSH---VLAAYACFLW-ETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 374 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~l 421 (436)
.++|...|++|++ +.|.++. ...+++.+|+ .+|+.++|++..++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3678888888875 4677773 4456666664 489999999988888753
No 425
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=68.93 E-value=1.1e+02 Score=29.39 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--DPGD---GESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
-+..+++-....|+..+.++.+|...+..|+|..|-.++-....+ +|+. ...|-.+|.--..+ +|+-|++.+.
T Consensus 114 ~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~q--nWd~A~edL~ 191 (432)
T KOG2758|consen 114 NLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQ--NWDGALEDLT 191 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 344455555567888899999999999999999998876554443 3332 23444454332222 4999999988
Q ss_pred HHHHh
Q 013800 292 RAALA 296 (436)
Q Consensus 292 ~al~~ 296 (436)
+.-+.
T Consensus 192 rLre~ 196 (432)
T KOG2758|consen 192 RLREY 196 (432)
T ss_pred HHHHH
Confidence 87664
No 426
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.83 E-value=9.6 Score=28.15 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=11.9
Q ss_pred cCCHHHHHHHHHHHHHh
Q 013800 245 KGDLYRAEDYYNHATMA 261 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~ 261 (436)
.|+|++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 57777777777777654
No 427
>PF12854 PPR_1: PPR repeat
Probab=68.79 E-value=14 Score=22.39 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...|..+...|.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455667777777777777777777664
No 428
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=68.78 E-value=37 Score=28.49 Aligned_cols=48 Identities=15% Similarity=0.015 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
+.....+...+..|+ +.-|.+++..++..+|++..+....+.++.++|
T Consensus 71 d~vl~~A~~~~~~gd-~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGD-YQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 334444444445555 555555555555555555555555555554444
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.26 E-value=43 Score=30.99 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcC
Q 013800 214 SAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHR 281 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~ 281 (436)
-...+++++++++..... ..+...+|..|+..|++++|+.+|+.+....... ..++..+..|....+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~- 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG- 232 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC-
Confidence 345566666666644321 2455678888888889999988888886543322 233444444555544
Q ss_pred CHHHHHHH
Q 013800 282 DQHRALTY 289 (436)
Q Consensus 282 d~~~A~~~ 289 (436)
+.+..+.+
T Consensus 233 ~~~~~l~~ 240 (247)
T PF11817_consen 233 DVEDYLTT 240 (247)
T ss_pred CHHHHHHH
Confidence 24444433
No 430
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=68.19 E-value=1.2e+02 Score=29.42 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~ 393 (436)
.+...|.++.++|+ ..+|...|++++.+.++..+
T Consensus 367 ~h~~RadlL~rLgr-~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 367 YHAARADLLARLGR-VEEARAAYDRAIALARNAAE 400 (415)
T ss_pred cHHHHHHHHHHhCC-hHHHHHHHHHHHHhcCChHH
Confidence 34445555555555 55555555555555555443
No 431
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=67.47 E-value=23 Score=29.26 Aligned_cols=84 Identities=10% Similarity=0.062 Sum_probs=55.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH---------HHHhCCCCHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER---------AVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~---------al~~~p~~~~~~~~la~~ 401 (436)
..+...+.....+.+++.++..++.++..+..+..++.+.. ..+.+..++. ++.+-... ..|.....+
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~--~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l~~~~~~l 91 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD--PQKEIERLDNKSNHYDIEKVGKLCEKA-KLYEEAVEL 91 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC--HHHHHHHHHhccccCCHHHHHHHHHHc-CcHHHHHHH
Confidence 44456688999999999999988888889999998888763 4666677662 11111110 223445555
Q ss_pred HHHCCChHHHHHHHHH
Q 013800 402 LWETEEDEDDSKSSDQ 417 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~ 417 (436)
+.+.|++.+|+..+-+
T Consensus 92 ~~k~~~~~~Al~~~l~ 107 (140)
T smart00299 92 YKKDGNFKDAIVTLIE 107 (140)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 6667777777666543
No 432
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.33 E-value=12 Score=27.59 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=13.0
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 013800 335 SKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~ 352 (436)
..|+|++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 457777777777777764
No 433
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=67.27 E-value=71 Score=29.25 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=59.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH-
Q 013800 331 LPIQSKGDLEGAEEYFSRAILAN---PGD---------GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS- 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~---p~~---------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-----~p~~~- 392 (436)
...+..|+|+.|+++..-||+.+ |+. .+-....+......|..++-. .+.....+ -|+..
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhcCCCChHHH
Confidence 45667899999999999999985 322 122334444455555522222 12222222 24433
Q ss_pred -HHHHHHHHHHH---------HCCChHHHHHHHHHHHhhCCCChhHH
Q 013800 393 -HVLAAYACFLW---------ETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 393 -~~~~~la~~~~---------~~g~~~~A~~~~~~al~l~p~~~~a~ 429 (436)
..+...|..+. ..++...|+.++++|++++|+-..-.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~ 215 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKK 215 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHH
Confidence 44555666663 44677899999999999999866544
No 434
>PRK12798 chemotaxis protein; Reviewed
Probab=67.21 E-value=1.4e+02 Score=29.83 Aligned_cols=198 Identities=14% Similarity=0.063 Sum_probs=121.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQ-LLQKKGDLYRAEDYYNHATMADPGD--GESWMQYAK 274 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~ 274 (436)
+.-...|..-+-.|+-.++.+.+...-... |...-.+..|.. ......+..+|+.+|+.+--+.|.. .++-.....
T Consensus 113 d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi 192 (421)
T PRK12798 113 DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL 192 (421)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Confidence 444555667777899999888877654332 223334444444 3456788999999999999999984 344445554
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-C
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-N 353 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~ 353 (436)
......++.+++..+-.+-+......+.+....-.+- ....+..+-. -...+...+.. +
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~-------------------~~~~~~~d~~-~~~~l~~~ls~~d 252 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFV-------------------DLVVRLDDEI-RDARLVEILSFMD 252 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHH-------------------HHHHhccccc-cHHHHHHHHHhcC
Confidence 4445556799999999998888877766554333221 1111111111 11224444443 3
Q ss_pred CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 354 PG-DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD----SHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 354 p~-~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
|. ...+|..+++.-.-.|+ .+-|.-.-++++.+.... ..+....+....-..++++|++.+.+
T Consensus 253 ~~~q~~lYL~iAR~Ali~Gk-~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 253 PERQRELYLRIARAALIDGK-TELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred chhHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 32 35678888888888888 888888888888875331 23344444444445556666554443
No 435
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.21 E-value=78 Score=34.37 Aligned_cols=29 Identities=17% Similarity=0.055 Sum_probs=25.2
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE 227 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 227 (436)
......|..++..|++++|...|-+.+..
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 56777888999999999999999998863
No 436
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=66.34 E-value=64 Score=36.37 Aligned_cols=45 Identities=20% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHH-----hHHHHcCCHHHHHHHHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQV-----LPIQSKGDLEGAEEYFSRA 349 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~g~~~~A~~~~~~a 349 (436)
..|+.-+...++.-+|.++..++... .++.+...|++|+.....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhc
Confidence 56777788888888888877766554 5566666677666554443
No 437
>PF13041 PPR_2: PPR repeat family
Probab=65.05 E-value=35 Score=22.36 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
..|..+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34444555555555555555555555543
No 438
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.11 E-value=17 Score=26.98 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=13.6
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 013800 334 QSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~ 352 (436)
-..|+|++|+.+|..+++.
T Consensus 17 D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 3567888888887777653
No 439
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.40 E-value=39 Score=24.97 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=16.1
Q ss_pred HcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHH
Q 013800 335 SKGDLEGAEEYFSRAI-------LANPGDGEIMSQYAK 365 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~ 365 (436)
..|++++|+.+|+.++ ...|+++.-......
T Consensus 18 ~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~k 55 (75)
T cd02682 18 KEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQM 55 (75)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 4566666655555554 345665554433333
No 440
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.25 E-value=2.1e+02 Score=31.70 Aligned_cols=167 Identities=15% Similarity=0.149 Sum_probs=83.4
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH------
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY----PCHPLLLRNYAQLLQKKGDL--YRAEDYYNHATMADPGDGE------ 267 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------ 267 (436)
-+..+..+|...|++++|++++.+..... +.....+-..-..+...+.. +-..++..=.+..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 35567778888888888888888887733 22223333333333344433 3344443333344443210
Q ss_pred -----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH---Hc
Q 013800 268 -----SWMQYAKLV--WELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ---SK 336 (436)
Q Consensus 268 -----~~~~la~~~--~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~ 336 (436)
.-.....++ .... ..+-++.+++.++..... +...+..++..|.+ .+.. ..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~-~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e-----------------~v~~~~~~~ 647 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSK-EPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE-----------------KVLEQASTD 647 (877)
T ss_pred ChhhhccCCHHHHHHHhhhh-CcchhHHHHHHHhHhccccchHHHHHHHHHHHH-----------------HHhhccCch
Confidence 000111121 2222 366777888888777665 34444445544433 1110 01
Q ss_pred CCHHHHHHH--HHHHHH---------------hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 337 GDLEGAEEY--FSRAIL---------------ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 337 g~~~~A~~~--~~~al~---------------~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
++-+++.+. .++... .-|. ...|...+.++.++|+ .++|+..|-..+.
T Consensus 648 ~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~-~~l~ee~aill~rl~k-he~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 648 GKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNG-DELYEERAILLGRLGK-HEEALHIYVHELD 712 (877)
T ss_pred hccccchhhhHHHHHHHHhhhhcccCcchhhhhccc-hhHHHHHHHHHhhhhh-HHHHHHHHHHHhc
Confidence 111222222 122111 1122 4667778888888888 7888877766553
No 441
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=62.15 E-value=2.6 Score=43.95 Aligned_cols=113 Identities=14% Similarity=-0.034 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 182 PPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMI--DEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
+..|+..+-...+..........+..+...|++..|..++.+.- .+.|. ........|.+....|++++|+..+...
T Consensus 8 A~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~ 87 (536)
T PF04348_consen 8 AEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQ 87 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC
Confidence 34455554444442222233344457777899999999888776 23332 2356677788888999999999988741
Q ss_pred --HHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 259 --TMADPG-DGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 259 --l~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
..+.+. ....+..++.++...+. +-+|...+-++-.
T Consensus 88 ~~~~l~~~~~~~~~~l~A~a~~~~~~-~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 88 DLWQLPPEQQARYHQLRAQAYEQQGD-PLAAARERIALDP 126 (536)
T ss_dssp ----------------------------------------
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Confidence 122222 23344455666666553 6666655444433
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.80 E-value=92 Score=25.46 Aligned_cols=108 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYP---CHPLLLRNYAQLLQKK----GDLYRAEDYYNHATMADPGD---------GESWMQYAKLVW 277 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P---~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~ 277 (436)
.++-...|+..+.... +-...|.....-.... +.-..-...+++++....++ ..+|..++..
T Consensus 1 ~~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~-- 78 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL-- 78 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH--
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013800 278 ELHRDQHRALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI 350 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 350 (436)
...+...|+.+.... -..+..+..+| ..+...|++++|.+.|+.+|
T Consensus 79 -----~~~~~~if~~l~~~~IG~~~A~fY~~wA----------------------~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 -----SSDPREIFKFLYSKGIGTKLALFYEEWA----------------------EFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----BSHHHHHHHHHHHHTTSTTBHHHHHHHH----------------------HHHHHTT-HHHHHHHHHHHH
T ss_pred -----ccCHHHHHHHHHHcCccHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHhhC
No 443
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.08 E-value=57 Score=24.08 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=14.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHH
Q 013800 238 YAQLLQKKGDLYRAEDYYNHAT-------MADPGDGE 267 (436)
Q Consensus 238 la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~ 267 (436)
.|.-+-..|++++|+.+|+.++ ...|+++.
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 3333344555555555444443 34555544
No 444
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.83 E-value=1.3e+02 Score=33.35 Aligned_cols=89 Identities=15% Similarity=0.047 Sum_probs=55.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh--------cCCHHHHHHH--HHHHH---Hh----CCCC-
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLVWEL--------HHDHDKALCY--FERAV---QA----SPAD- 391 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~--------g~d~~~A~~~--~~~al---~~----~p~~- 391 (436)
.-+.......-++.+++.++..... ....+..++..|... ++ -+++.+. .++.. +. +|+-
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~k-g~e~~E~~~rekl~~~l~~s~~Y~p~~~ 677 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGK-GEEAPETTVREKLLDFLESSDLYDPQLL 677 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhc-cccchhhhHHHHHHHHhhhhcccCcchh
Confidence 3456678888899999999887665 344555555555321 11 1233333 22222 11 1221
Q ss_pred ------HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 392 ------SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 392 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
...|...+.++.++|+.++|+..|-..+.
T Consensus 678 L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 678 LERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 35677788889999999999998877765
No 445
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=59.83 E-value=64 Score=33.78 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=34.1
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~ 382 (436)
..+...+..++|-.+|++.+..+|+ +.++.++.-+.+.|- ...|...++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~ 98 (578)
T PRK15490 50 EFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGL-AKDAQLILK 98 (578)
T ss_pred hhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhh-hhHHHHHHH
Confidence 4555667777777777777777776 566677777777776 666666665
No 446
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=59.39 E-value=22 Score=21.48 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 374 HDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 374 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
++.|..+|++.+...|+ +..|..+|.+
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 56666666666666655 5555555543
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=58.93 E-value=18 Score=36.06 Aligned_cols=53 Identities=11% Similarity=-0.090 Sum_probs=37.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA---------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
+++.-.|+|..|++.++.. ++ .+-+..+++.+|.+|..+++ |.+|++.|...+
T Consensus 130 Rvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrR-Y~DAir~f~~iL 191 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRR-YADAIRTFSQIL 191 (404)
T ss_pred HHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 6777778888887766542 11 22345677888888888888 888888887765
No 448
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.14 E-value=16 Score=20.80 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
|..+-..+.+.|+ +++|.+.|++.
T Consensus 3 y~~li~~~~~~~~-~~~a~~~~~~M 26 (31)
T PF01535_consen 3 YNSLISGYCKMGQ-FEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHHccch-HHHHHHHHHHH
Confidence 3344444455555 55555555444
No 449
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=57.39 E-value=1.4e+02 Score=26.61 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhc
Q 013800 339 LEGAEEYFSRAILANP--GDGEIMSQYAKLVWELH 371 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g 371 (436)
+++.++-+.+.+-.-| ++++.|+..|.|+....
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~A 192 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHLWIA 192 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 4444454545444444 56778888887776543
No 450
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=56.52 E-value=36 Score=24.38 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=12.3
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 013800 333 IQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~ 351 (436)
....|++++|+.+|.++++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3356777777777766654
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.23 E-value=3.2e+02 Score=31.21 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------HccCchHH----HHHHHHHHHHhHHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW------EMEDDGED----DKAQEEHIQVLPIQS 335 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~------~~g~~~~A----~~~~~~~~~~~~~~~ 335 (436)
+...+.+|.+|...+. ..+|+.+|.+|..--.... ++..+..... ..|+...+ ..+|...+ +++.+
T Consensus 920 ~v~rfmlg~~yl~tge-~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~--rlle~ 995 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGE-PVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVV--RLLEE 995 (1480)
T ss_pred HHHHHhhheeeecCCc-hHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHH--HHHHH
Confidence 3445566666666654 7777777777765443322 3333332211 23332211 22222222 77778
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCh
Q 013800 336 KGDLEGAEEYFSRAILANPGDGE----IMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEED 408 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~ 408 (436)
-+-.+.+++....||+.-|++.. .+..+=.-+..+|. +-+|... +-.+|+.. ..+..+..++++.|+.
T Consensus 996 hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh-~~qAy~a----i~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 996 HNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGH-WFQAYKA----ILRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred hccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhh-HHHHHHH----HHcCCcHHHHHHHHHHHHHHHHhccch
Confidence 88889999999999988665433 23333333455666 6666443 34466633 4556666777777765
Q ss_pred H
Q 013800 409 E 409 (436)
Q Consensus 409 ~ 409 (436)
+
T Consensus 1071 ~ 1071 (1480)
T KOG4521|consen 1071 E 1071 (1480)
T ss_pred H
Confidence 4
No 452
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.20 E-value=63 Score=31.76 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
.-+|+.+++.++..+|.+......+..+|..+|-...|...+.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5689999999999999999999999988888888777777776
No 453
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.42 E-value=15 Score=33.49 Aligned_cols=92 Identities=15% Similarity=0.065 Sum_probs=53.7
Q ss_pred hhCCCHHHHHHHHHHHHHhC---CCCH---------HHHHHHHHHHHHcCCHHHH--HHHHHHHHHh--CCCC--HHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEY---PCHP---------LLLRNYAQLLQKKGDLYRA--EDYYNHATMA--DPGD--GESWM 270 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~---P~~~---------~~~~~la~~~~~~g~~~~A--~~~~~~al~~--~p~~--~~~~~ 270 (436)
+..|+++.|+++...+|+.+ |+.. +-...-+......|+.-+. ...+.....- -|+. +..+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 56799999999999999976 3321 2233344444555552111 1222222211 2332 33455
Q ss_pred HHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCC
Q 013800 271 QYAKLVWE--------LHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 271 ~la~~~~~--------~~~d~~~A~~~~~~al~~~p~~ 300 (436)
..|..+.. ..++...|+.++++|++++|+.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 56665532 1234789999999999999873
No 454
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=55.31 E-value=63 Score=31.80 Aligned_cols=47 Identities=15% Similarity=0.059 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
...-+|+.+++.++...|.+......+..+|...|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34568899999999999999999999999999999999999998754
No 455
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.91 E-value=30 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=12.6
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 013800 335 SKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~ 352 (436)
..|+.++|+.+|++++..
T Consensus 20 E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 20 EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 347777777777777654
No 456
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=54.61 E-value=3.5e+02 Score=30.24 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHH
Q 013800 339 LEGAEEYFSRAILA-NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 339 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
.+.-.+.|.+.+.- +-.+..+|..-..-...+|+ |-.|++++.++++.+.+. ...+..++.++..+|-. --..+.
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~-yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~ 1289 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQ-YGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFV 1289 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHH-HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHH
Confidence 44445566665553 45566666666666677788 999999999999855432 35566688888888755 333444
Q ss_pred HHHHh
Q 013800 416 DQFQQ 420 (436)
Q Consensus 416 ~~al~ 420 (436)
++.+.
T Consensus 1290 ~~~~~ 1294 (1304)
T KOG1114|consen 1290 KNWMR 1294 (1304)
T ss_pred hhhee
Confidence 44443
No 457
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.44 E-value=1.9e+02 Score=27.43 Aligned_cols=106 Identities=11% Similarity=0.032 Sum_probs=61.4
Q ss_pred hhhhCCCHHHHHHHHHHHHHhC--------CCC--HHH---HHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEY--------PCH--PLL---LRNYA-QLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~--------P~~--~~~---~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
.++-..||..|++..+++++.= |.. .+. +..+| +++..++++.+++.+.-+-.+.-.+-|.-...+
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL 123 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 4445578999999999988732 111 111 22233 456689999999998888777655555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDS--NILAAYACFLWE 313 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~ 313 (436)
-.+++..-+++....+.-..-+ .+|+|. .-+-.++.++..
T Consensus 124 CILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHHH
Confidence 5555544444555555444444 455432 224444444444
No 458
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.16 E-value=2e+02 Score=27.35 Aligned_cols=169 Identities=12% Similarity=0.022 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADP--------GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
..+|+-....+++++|+..|.+.+.... +.......++.+|...|. +..-.......-+ +|...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~-~~~l~~~i~~sre-------~m~~f 78 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGD-YCSLGDTITSSRE-------AMEDF 78 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCC-cchHHHHHHhhHH-------HHHHh
Confidence 4567777778888888888888776521 113345566666666553 4332222222111 11110
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
. ..+..+.++..+. ..-.....++.-+..+...++.....- ..-..+..++++.|. |.+|+...
T Consensus 79 t--------k~k~~KiirtLie-kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~-YsdalalI 148 (421)
T COG5159 79 T--------KPKITKIIRTLIE-KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK-YSDALALI 148 (421)
T ss_pred c--------chhHHHHHHHHHH-hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHH
Confidence 0 0000011111111 111123444555555555544332211 223456667788888 88888877
Q ss_pred HHHHHh------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 382 ERAVQA------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 382 ~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
.-.+.- .+.-..++..-..+|....+..++...+..|..+.
T Consensus 149 n~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~A 195 (421)
T COG5159 149 NPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLA 195 (421)
T ss_pred HHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 665531 13334667777888888888888877777766663
No 459
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.36 E-value=2e+02 Score=27.18 Aligned_cols=83 Identities=7% Similarity=-0.033 Sum_probs=45.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHH-----HHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS--HVL-----AAYACFL 402 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~--~~~-----~~la~~~ 402 (436)
.++.++++|.++..+..+..+.-.+- ++++-.-...|.+.++ +....+.-...+. +|+|. .-+ ..+-.++
T Consensus 91 QALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~E-p~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 91 QALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQE-PAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHH
Confidence 55667778888777766665543332 3344444445556666 5555555544443 44432 112 3333445
Q ss_pred HHCCChHHHHHHH
Q 013800 403 WETEEDEDDSKSS 415 (436)
Q Consensus 403 ~~~g~~~~A~~~~ 415 (436)
.=+|.+++|.+..
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 5567777776655
No 460
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.05 E-value=98 Score=30.79 Aligned_cols=88 Identities=13% Similarity=-0.002 Sum_probs=60.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CC-CHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANP---GDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-------PA-DSHVLAAYA 399 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-------p~-~~~~~~~la 399 (436)
.-|...|+++.|++.|-++-...- .-...|.++..+-..+|+ |..-..+..+|..-- +. ...+...-|
T Consensus 158 dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~n-w~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ag 236 (466)
T KOG0686|consen 158 DHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGN-WGHVLSYISKAESTPDANENLAQEVPAKLKCAAG 236 (466)
T ss_pred HHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcc-hhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHH
Confidence 677788999999999998655433 235678888888888888 887777777765431 00 113445555
Q ss_pred HHHHHCCChHHHHHHHHHHH
Q 013800 400 CFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al 419 (436)
.+.+.+++|..|.+++-.+.
T Consensus 237 La~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 237 LANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 66666778888877765443
No 461
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=52.62 E-value=48 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+.+.|..+|+.+++..|++..++..|.
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i 117 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMI 117 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 355666666666666666666555554
No 462
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=52.01 E-value=2.1e+02 Score=27.00 Aligned_cols=133 Identities=10% Similarity=0.044 Sum_probs=75.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHH--HHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 239 AQLLQKKGDLYRAEDYYNHATMADP----GDGESWMQY--AKLVWELHRDQ---HRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l--a~~~~~~~~d~---~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
...+...++|++=.+.+.+..+... .... |... +..++...... ..-...++.-++..|+...++..+|.
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 3456778888888888887765422 2222 1111 11111211101 14667778888899999999999887
Q ss_pred HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
++....-..+........-.........-.++|...+.+|++++|....++..+-.+-...|.
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 765532111000000000000111112235677888888888888888888888777777777
No 463
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=51.92 E-value=33 Score=19.83 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
|+.+-..+.+.|+ +++|.+.|.+..
T Consensus 3 ~n~li~~~~~~~~-~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGR-VEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 3344444455555 555555555443
No 464
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=51.29 E-value=1.4e+02 Score=31.34 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
...+..|..+...++.++|-++|++.+..+|+ ..++.+|.-++..|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 88 (578)
T PRK15490 43 LAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTG 88 (578)
T ss_pred HHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhh
Confidence 33344444444445555555555555555544 33344444444433
No 465
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=51.17 E-value=2.6e+02 Score=27.76 Aligned_cols=19 Identities=5% Similarity=-0.052 Sum_probs=13.0
Q ss_pred HHCCChHHHHHHHHHHHhh
Q 013800 403 WETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 403 ~~~g~~~~A~~~~~~al~l 421 (436)
...|+|++|+..+-+++++
T Consensus 257 ~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 257 ATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 3677777777766666664
No 466
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.82 E-value=43 Score=35.90 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=84.2
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH--cCCHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQK--KGDLYRAEDY 254 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~--~g~~~~A~~~ 254 (436)
++..++.++...... |+.+++.+++..+.--|..++.+-|.+ +....+.+.++.. .++|.+++.-
T Consensus 45 di~v~l~ra~~~~~E---------~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E 115 (748)
T KOG4151|consen 45 DIEVFLSRALELKEE---------GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPE 115 (748)
T ss_pred chHHHHHHHHHHHhh---------hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCc
Confidence 566667766666553 667788888888877788877777632 3455566666654 6788888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
..-++...|....++...+.+|...++ ++-|++.+.-.....|.+..+.
T Consensus 116 ~~la~~~~p~i~~~Ll~r~~~y~al~k-~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 116 CELALESQPRISKALLKRARKYEALNK-LDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred hhhhhhccchHHHHHhhhhhHHHHHHH-HHHHHHHHHHHhcCCCCcchHH
Confidence 888888888888888888888888876 7888888777777788875443
No 467
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.48 E-value=2.4e+02 Score=27.22 Aligned_cols=86 Identities=20% Similarity=0.127 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G------DGESWMQYAKLVWELHRDQHRALTYFERAA--LAAPQDSN 302 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~------~~~~~~~la~~~~~~~~d~~~A~~~~~~al--~~~p~~~~ 302 (436)
.+...+|.+|.+.++|..|-..+.-. .++. . -...+..+|.+|.+.+ |..+|..+..++- ..+..+..
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~-d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDD-DKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhhhcccCHH
Confidence 45677888888888888777665432 2211 1 1235667788877776 4777777777763 22334544
Q ss_pred HHH----HHHHHHHHccCchHH
Q 013800 303 ILA----AYACFLWEMEDDGED 320 (436)
Q Consensus 303 ~~~----~la~~~~~~g~~~~A 320 (436)
... .++.++-..+++-+|
T Consensus 182 Lqie~kvc~ARvlD~krkFlEA 203 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEA 203 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 443 334444444444333
No 468
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.81 E-value=18 Score=26.78 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHHHHh
Q 013800 212 DDSAEAEEYYKRMIDE 227 (436)
Q Consensus 212 g~~~~A~~~~~~al~~ 227 (436)
|+|++|+.+|+.+++.
T Consensus 20 g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 20 GRYSEAVFYYKEAAQL 35 (76)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7777777777776653
No 469
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.47 E-value=1.6e+02 Score=28.45 Aligned_cols=95 Identities=8% Similarity=-0.039 Sum_probs=54.6
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C-HH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG----D-GE 267 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~-~~ 267 (436)
.+|.+++..+++.|+-+.|++.+.+..+..- +-.-....+|.+|....-..+-++..+..++...+ | -.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 5788888889999999999988887766432 11233455666665544444444444444444322 1 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+|. | +|...-++|.+|...|-.++..
T Consensus 185 vY~--G-ly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQ--G-LYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHH--H-HHHHHHHhHHHHHHHHHHHccc
Confidence 222 2 2233334578887777666543
No 470
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=46.74 E-value=44 Score=24.59 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=10.4
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013800 335 SKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~ 351 (436)
..|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666666654
No 471
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=46.44 E-value=1e+02 Score=25.23 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERAVQASPAD---------------SHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
+..+|...++.++ +-.++-.|++|+.+..+- .....+||.++..+|+.+-.+++++-|
T Consensus 4 htllAd~a~~~~~-~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEAD-PLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 3455666666666 677777777766542110 133477888888888888888877543
No 472
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.08 E-value=1e+02 Score=33.99 Aligned_cols=139 Identities=14% Similarity=0.061 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
+.|+..|....+..+.-..+.+..+.++...+.+.+|.+.+-+....++ ++..|+-.+..++
T Consensus 241 e~a~~~~~~i~k~~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~------------------dl~~allleqaal 302 (960)
T KOG1938|consen 241 ENAFPLYRLILKNYQDANRCVLNSAEILKFLGLHKEAAEALARETSEEG------------------DLLSALLLEQAAL 302 (960)
T ss_pred hhhhHHHHHHHhhccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCc------------------hhhhHHHHHHHHH
Confidence 3466666666666665566677777777777777777766655443333 2344444444444
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVW 368 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 368 (436)
...-.++...+..+.-....+ ..+-..|....|+.+|..++...+.. ...++.++.+|.
T Consensus 303 ~f~~tkp~m~~ktffHpVLal---------------~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~ 367 (960)
T KOG1938|consen 303 CFGSTKPPMPRKTFFHPVLAL---------------IRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYL 367 (960)
T ss_pred HhhcCCCCccchhhcceeehh---------------hhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhh
Confidence 332111111111110000000 45556677899999999999886542 234556666444
Q ss_pred HhcCCHHHHHHHHHHHHHhC
Q 013800 369 ELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~al~~~ 388 (436)
-.+. ++|-..+.+.+...
T Consensus 368 l~~~--D~a~~~f~~~i~~~ 385 (960)
T KOG1938|consen 368 LCQE--DDADEEFSKLIADC 385 (960)
T ss_pred hhcc--hhHHHHHHHHHhhh
Confidence 4433 56666666665443
No 473
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=46.07 E-value=91 Score=31.06 Aligned_cols=100 Identities=8% Similarity=-0.034 Sum_probs=59.6
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEYPCHP-------LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.+..-+|+++. -.+.++++|... .+-+..|-+|..+++|.+|+..|...+-.-.......-..+.++-.
T Consensus 243 R~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~ 318 (525)
T KOG3677|consen 243 RMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDM 318 (525)
T ss_pred HHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhh
Confidence 35556788555 445566666432 2237789999999999999999988865422222222233333333
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q 013800 279 LHRDQHRALTYFERAALAAPQD--SNILAAYAC 309 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~--~~~~~~la~ 309 (436)
.++..+.--..+.-++.+.|.. ...+..++.
T Consensus 319 inKq~eqm~~llai~l~~yPq~iDESi~s~l~E 351 (525)
T KOG3677|consen 319 INKQNEQMHHLLAICLSMYPQMIDESIHSQLAE 351 (525)
T ss_pred hhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence 3444666666777777777863 334444443
No 474
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.04 E-value=49 Score=24.24 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
.++|+.++.+|++.+ ..|++++|+.+|.++++.
T Consensus 3 ~~~A~~l~~~Av~~D-------------------------------------~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 3 LQKAIELVKKAIEED-------------------------------------NAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHH-------------------------------------HcCCHHHHHHHHHHHHHH
No 475
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.61 E-value=59 Score=18.77 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
.|..+..++.+.|+ ++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~-~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGD-PDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 34455555555555 5666555555443
No 476
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.60 E-value=2.9e+02 Score=26.77 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
.+++.+.|..|.+.|+.+.|.+++.+..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 478999999999999999999999887765
No 477
>PRK09687 putative lyase; Provisional
Probab=45.42 E-value=2.7e+02 Score=26.28 Aligned_cols=154 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
..++..+..++.-. +..+.+..+..+...++ .+|+..+..++. ..++.+....+..+-..+-+..++...+.+++
T Consensus 127 ~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~--d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L 201 (280)
T PRK09687 127 PKIVEQSQITAFDK--STNVRFAVAFALSVIND-EAAIPLLINLLK--DPNGDVRNWAAFALNSNKYDNPDIREAFVAML 201 (280)
T ss_pred hHHHHHHHHHhhCC--CHHHHHHHHHHHhccCC-HHHHHHHHHHhc--CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~ 374 (436)
...+..+...-. ..+.+.|+ ..|+..+-+.++... +....+.++...|.
T Consensus 202 --~D~~~~VR~~A~----------------------~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~-- 250 (280)
T PRK09687 202 --QDKNEEIRIEAI----------------------IGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGD-- 250 (280)
T ss_pred --cCCChHHHHHHH----------------------HHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCC--
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 375 DKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 375 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.+|+..+.+++..+| +..+....-+.+.+.
T Consensus 251 ~~a~p~L~~l~~~~~-d~~v~~~a~~a~~~~ 280 (280)
T PRK09687 251 KTLLPVLDTLLYKFD-DNEIITKAIDKLKRS 280 (280)
T ss_pred HhHHHHHHHHHhhCC-ChhHHHHHHHHHhcC
No 478
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=45.19 E-value=56 Score=23.30 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=11.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 013800 239 AQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al 259 (436)
|.-+-..|++++|+.+|.+++
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 333444566666666555444
No 479
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=44.02 E-value=4.4e+02 Score=30.66 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHhCCC
Q 013800 337 GDLEGAEEYFSRAILA----NPG--DGEIMSQYAKLVWELH--------------------HDHDKALCYFERAVQASPA 390 (436)
Q Consensus 337 g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g--------------------~d~~~A~~~~~~al~~~p~ 390 (436)
..+++|+.+|.++... .|. ..++...++.++.... . -.++...+.+++.....
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~-~~eI~~~l~~~~~~~l~ 437 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISS-RSEIAEFLFKAFPLQLK 437 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCC-HHHHHHHHHHhhhhhhh
Confidence 4578899999998633 232 2467777888887777 5 67888888888876542
Q ss_pred ------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 391 ------DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 391 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
....+..+|.+|..+|-..++.-+++.++..
T Consensus 438 ~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 438 DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2367889999999999999988888887654
No 480
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.82 E-value=2.3e+02 Score=25.05 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.8
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++.+.|.+++|.+.+++... +|+.......|..+-.+.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 788899999999999999988 777766655555544433
No 481
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=43.76 E-value=7.7 Score=40.45 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 216 EAEEYYKRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHAT--MADPG-DGESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 216 ~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
.|..++.++-...+. ....++.-+..+...|++..|...+.+.- .+.+. ........|.+....+ ++++|+..+.
T Consensus 7 aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~-~~~~Al~~L~ 85 (536)
T PF04348_consen 7 AAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQG-DPEQALSLLN 85 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcC-CHHHHHHHhc
Confidence 344455555544443 33566777889999999999999999876 34444 3344555666766666 4999999887
Q ss_pred H
Q 013800 292 R 292 (436)
Q Consensus 292 ~ 292 (436)
.
T Consensus 86 ~ 86 (536)
T PF04348_consen 86 A 86 (536)
T ss_dssp -
T ss_pred c
Confidence 4
No 482
>PF12549 TOH_N: Tyrosine hydroxylase N terminal ; InterPro: IPR021164 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. There is a single completely conserved residue G that may be functionally important. Tyrosine hydroxylase converts L-tyrosine to L-DOPA in the catecholamine synthesis pathway. ; GO: 0004511 tyrosine 3-monooxygenase activity, 0055114 oxidation-reduction process
Probab=43.69 E-value=14 Score=20.88 Aligned_cols=11 Identities=55% Similarity=0.664 Sum_probs=8.4
Q ss_pred cccccccccCC
Q 013800 56 LKGLRRASSDG 66 (436)
Q Consensus 56 ~~~~~~~~~~~ 66 (436)
-+|+||+.|+-
T Consensus 10 ~~G~r~avse~ 20 (25)
T PF12549_consen 10 AKGFRRAVSEL 20 (25)
T ss_pred Cccchhhhhhh
Confidence 46999998763
No 483
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.51 E-value=21 Score=33.21 Aligned_cols=11 Identities=27% Similarity=0.441 Sum_probs=6.6
Q ss_pred cccCCCCCCCc
Q 013800 39 TLSCSSPPTSQ 49 (436)
Q Consensus 39 ~~~~~~~~~~~ 49 (436)
+.||..|++|.
T Consensus 24 SgS~KgSd~Sp 34 (305)
T PF15290_consen 24 SGSCKGSDSSP 34 (305)
T ss_pred CccccCCCCCC
Confidence 44666666664
No 484
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=42.55 E-value=49 Score=24.35 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=9.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013800 244 KKGDLYRAEDYYNHATM 260 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~ 260 (436)
..|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34566666665555543
No 485
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.50 E-value=3.4e+02 Score=26.56 Aligned_cols=34 Identities=6% Similarity=-0.106 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++.+-+..+.++.-.|++.++...++.++-+.|+
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 4555566667777777888888888877777665
No 486
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=41.78 E-value=3.2e+02 Score=26.15 Aligned_cols=47 Identities=17% Similarity=-0.008 Sum_probs=36.3
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
..+++.+.++..++.+..+|--.+..+..+.++.++|. +.+.+....
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~ 157 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRD 157 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 34677888999999999988778888999999999994 554444443
No 487
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=41.58 E-value=4.5e+02 Score=27.77 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=51.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCC---Ch
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYACFLWETE---ED 408 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g---~~ 408 (436)
+....+|+-|+...++. .-+...+|..+|.++.++++ +..|..-|.+++++..++ +++.+.+..+. .-| +.
T Consensus 566 Lie~ErYqlaV~mckKc---~iD~f~aW~AWGlA~Lk~e~-~aaAR~KFkqafklkgedipdvi~diin~i-eGgpp~dV 640 (1141)
T KOG1811|consen 566 LIEAERYQLAVEMCKKC---GIDTFGAWHAWGLACLKAEN-LAAAREKFKQAFKLKGEDIPDVIFDIINLI-EGGPPRDV 640 (1141)
T ss_pred HHHHHHHHHHHHHHhhc---CCCcccHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCCCccchHHHHHHHhh-cCCCcchH
Confidence 33445555565555443 22445688888999999988 999999999998876443 44555444332 222 23
Q ss_pred HHHHHHHHHHHhhCCC
Q 013800 409 EDDSKSSDQFQQVAPI 424 (436)
Q Consensus 409 ~~A~~~~~~al~l~p~ 424 (436)
....++|+....-.|.
T Consensus 641 q~Vrem~dhlak~apt 656 (1141)
T KOG1811|consen 641 QDVREMLDHLAKPAPT 656 (1141)
T ss_pred HHHHHHHHHhccCCcc
Confidence 4445555544444343
No 488
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.62 E-value=98 Score=33.29 Aligned_cols=117 Identities=19% Similarity=0.124 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHc-CCHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAKLVWELH-RDQHRALTY 289 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~-~d~~~A~~~ 289 (436)
+++...+.++++. ..-++.++..+++..|.--|..++.+-|.+ .....+.+.++...+ ++|..++..
T Consensus 44 ~di~v~l~ra~~~--------~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E 115 (748)
T KOG4151|consen 44 EDIEVFLSRALEL--------KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPE 115 (748)
T ss_pred cchHHHHHHHHHH--------HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCc
Confidence 3455555555443 345777888888888888888888877742 334445555554443 467777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
..-++...|....+++..+ ..|...++++-|++.+.-.....|.+..+..
T Consensus 116 ~~la~~~~p~i~~~Ll~r~----------------------~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 116 CELALESQPRISKALLKRA----------------------RKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hhhhhhccchHHHHHhhhh----------------------hHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 7777777777777777766 6666666677777776666666777654444
No 489
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.15 E-value=45 Score=24.92 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMID 226 (436)
Q Consensus 212 g~~~~A~~~~~~al~ 226 (436)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555443
No 490
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=40.11 E-value=4.6e+02 Score=27.48 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQK------------KGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.+++.......-+..|.++ .+|..+-..+.. -|+.++|+..+++-..-.+ ........+.++
T Consensus 274 qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~-~~lpi~~~~~ll 352 (547)
T PF14929_consen 274 QEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISST-CALPIRLRAHLL 352 (547)
T ss_pred HHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCC-ccchHHHHHHHH
Confidence 3444444433335555555 555555554432 2788888877776443322 222333344444
Q ss_pred HHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH---HHh
Q 013800 277 WELHR-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRA---ILA 352 (436)
Q Consensus 277 ~~~~~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~a---l~~ 352 (436)
...++ .-..-..+|+.+++++|........+. ..+.. ...+...++-. +.+
T Consensus 353 e~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~----------------------~~~~~---~~~~~~Lle~i~~~l~~ 407 (547)
T PF14929_consen 353 EYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLI----------------------LLHQK---DYSAEQLLEMIALHLDL 407 (547)
T ss_pred HHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHH----------------------hhhhh---HHHHHHHHHHHHHHhhc
Confidence 44432 355667889999999998777665555 22222 33344444421 233
Q ss_pred CCCCHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCC
Q 013800 353 NPGDGEIMSQYAKLVWE-LHHDHDKALCYFERAVQA---------SPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 353 ~p~~~~~~~~la~~~~~-~g~d~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~ 407 (436)
.|. ..+|..++.++.+ .++ ++.-.+....++++ ...+..+|..++...-+...
T Consensus 408 ~~s-~~iwle~~~~~l~~~~~-~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 408 VPS-HPIWLEFVSCFLKNPSR-FEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFD 470 (547)
T ss_pred CCC-chHHHHHHHHHHhcccc-ccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhh
Confidence 444 6788888888887 444 65445555555422 23345677777666554433
No 491
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=39.95 E-value=39 Score=33.35 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHh
Q 013800 248 LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR-----------DQHRALTYFERAALA 296 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------d~~~A~~~~~~al~~ 296 (436)
+..|+.++++|.. .++|..|..+|.++..+|+ -|.+|..++.+|=..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555544 3334444444444433332 256777777777554
No 492
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=39.86 E-value=47 Score=24.47 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHH
Q 013800 246 GDLYRAEDYYNHATM 260 (436)
Q Consensus 246 g~~~~A~~~~~~al~ 260 (436)
|+|++|..+|..++.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
No 493
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.71 E-value=2.1e+02 Score=27.33 Aligned_cols=96 Identities=8% Similarity=0.030 Sum_probs=0.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMID------EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DGESWM 270 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 270 (436)
.+|.++|..|.+.++.+.+.+...+.+. ..-+-...-..+|.+|..+.-.++-++..+..++...+ ...-+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK 195 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHH
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al 294 (436)
.+--++...-++|.+|..++-..+
T Consensus 196 ~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 196 VYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHh
No 494
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=39.27 E-value=49 Score=24.37 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhC
Q 013800 340 EGAEEYFSRAILAN 353 (436)
Q Consensus 340 ~~A~~~~~~al~~~ 353 (436)
.+|+..+.+|++.+
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554433
No 495
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=39.27 E-value=1.5e+02 Score=24.31 Aligned_cols=58 Identities=14% Similarity=0.057 Sum_probs=37.0
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---------------PLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
+..+|....+.+++-.++-.|++|+.+..+- ...-.++|..+..+|+.+-.+.+++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 4556777777788888888888887643211 011246667777777777666666544
No 496
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=39.14 E-value=1.1e+02 Score=24.18 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
....|.+....|++..|.+.+.++.+..+..
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~ 92 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNP 92 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 3445555556666666666666665543333
No 497
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=38.76 E-value=62 Score=19.06 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 013800 283 QHRALTYFERAA 294 (436)
Q Consensus 283 ~~~A~~~~~~al 294 (436)
..+|..+|+++.
T Consensus 21 ~~~A~~~~~~Aa 32 (36)
T smart00671 21 LEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 498
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=38.64 E-value=4.2e+02 Score=28.26 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHc
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELH 280 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~ 280 (436)
++.-.|+|+.|++++-+ .+.+..--..+|.++...|-+.-....-...+..++.+ +.....+.. .+...
T Consensus 267 ~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~-~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR-SFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHH-TTTTT
T ss_pred HHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH-HHhcc
Q ss_pred CCHHHHHHHH--------------------------------------------------HHHHHhCCCCHHHHHHHHHH
Q 013800 281 RDQHRALTYF--------------------------------------------------ERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 281 ~d~~~A~~~~--------------------------------------------------~~al~~~p~~~~~~~~la~~ 310 (436)
. ..+|+.+| .+.+............+..+
T Consensus 342 d-~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 342 D-PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp --HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh---CCCC-------HHHHHHHHHHHHHhcCCHHHHHHH
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA---NPGD-------GEIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~-------~~~~~~la~~~~~~g~d~~~A~~~ 380 (436)
-.+..+...-.+.+ .+|.-.|+|+.+++++.+.|.. .+.. ..-+..+|.-.... |..--..
T Consensus 421 A~~~e~~g~~~dAi------~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~---y~~~~~~ 491 (613)
T PF04097_consen 421 AREAEERGRFEDAI------LLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILER---YKSNPHI 491 (613)
T ss_dssp HHHHHHCT-HHHHH------HHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHH---HTTSHHH
T ss_pred HHHHHHCCCHHHHH------HHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHH---HHhCcch
Q ss_pred HHHHHHhCCCCHHHHHHHHHH--HHHCCChHHHHHHHHH
Q 013800 381 FERAVQASPADSHVLAAYACF--LWETEEDEDDSKSSDQ 417 (436)
Q Consensus 381 ~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~ 417 (436)
+.++-...-.-...+..+..+ ++..|++++|++.+++
T Consensus 492 ~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~ 530 (613)
T PF04097_consen 492 SSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK 530 (613)
T ss_dssp HTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 499
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=38.48 E-value=79 Score=19.02 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 013800 283 QHRALTYFERAAL 295 (436)
Q Consensus 283 ~~~A~~~~~~al~ 295 (436)
+++|+.+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 3444444444443
No 500
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.15 E-value=4.3e+02 Score=26.51 Aligned_cols=95 Identities=16% Similarity=0.062 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ---DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
.++..+|..|...|+ ++.|+++|-++-...-. ....+.++. .+-...|+|..-.
T Consensus 151 ra~~Dl~dhy~~cG~-l~~Alr~YsR~RdYCTs~khvInm~ln~i----------------------~VSI~~~nw~hv~ 207 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQ-LDNALRCYSRARDYCTSAKHVINMCLNLI----------------------LVSIYMGNWGHVL 207 (466)
T ss_pred HHHHHHHHHHHHhcc-HHHHHhhhhhhhhhhcchHHHHHHHHHHH----------------------HHHHhhcchhhhh
Confidence 456677777777764 88888888885544332 344455555 4444556665555
Q ss_pred HHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 344 EYFSRAILAN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 344 ~~~~~al~~~--------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.+..+|...- .-.+.+...-|.+...+++ |..|.++|-.+.
T Consensus 208 sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkk-yk~aa~~fL~~~ 256 (466)
T KOG0686|consen 208 SYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKK-YKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHH-HHHHHHHHHhCC
Confidence 5555544331 0112345555666667777 888888886653
Done!