Query 013800
Match_columns 436
No_of_seqs 629 out of 4071
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 17:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 7.6E-28 2.6E-32 237.0 29.9 254 178-434 116-382 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1E-27 3.5E-32 236.1 29.2 250 178-430 82-343 (388)
3 2pl2_A Hypothetical conserved 100.0 1E-27 3.4E-32 218.1 25.6 199 196-419 3-212 (217)
4 3hym_B Cell division cycle pro 100.0 1.6E-26 5.5E-31 220.8 25.3 250 178-430 37-308 (330)
5 4eqf_A PEX5-related protein; a 100.0 1.5E-26 5E-31 225.7 24.2 227 199-427 66-316 (365)
6 2h6f_A Protein farnesyltransfe 100.0 1.2E-26 4.2E-31 228.8 23.7 222 189-435 89-319 (382)
7 3ieg_A DNAJ homolog subfamily 99.9 1.4E-25 4.8E-30 216.3 29.7 250 178-430 52-344 (359)
8 1fch_A Peroxisomal targeting s 99.9 1.3E-25 4.4E-30 218.5 27.2 245 178-425 40-318 (368)
9 3hym_B Cell division cycle pro 99.9 4.1E-25 1.4E-29 211.0 28.8 238 196-434 20-279 (330)
10 2xpi_A Anaphase-promoting comp 99.9 5.9E-25 2E-29 228.1 31.2 253 181-436 323-595 (597)
11 3ieg_A DNAJ homolog subfamily 99.9 7.6E-25 2.6E-29 211.2 29.4 254 178-434 18-315 (359)
12 2y4t_A DNAJ homolog subfamily 99.9 1.8E-24 6.2E-29 216.4 32.3 246 181-429 44-366 (450)
13 2h6f_A Protein farnesyltransfe 99.9 7.2E-26 2.5E-30 223.3 20.7 226 177-428 111-355 (382)
14 2y4t_A DNAJ homolog subfamily 99.9 9.2E-25 3.1E-29 218.5 28.3 227 178-407 109-378 (450)
15 1fch_A Peroxisomal targeting s 99.9 4.9E-25 1.7E-29 214.4 24.3 240 178-421 79-359 (368)
16 2q7f_A YRRB protein; TPR, prot 99.9 1.5E-24 5.1E-29 198.2 25.5 208 199-430 24-231 (243)
17 3uq3_A Heat shock protein STI1 99.9 2.5E-24 8.6E-29 198.1 27.2 221 198-429 5-250 (258)
18 3cv0_A Peroxisome targeting si 99.9 1.4E-24 4.6E-29 207.1 26.1 224 199-424 22-272 (327)
19 4eqf_A PEX5-related protein; a 99.9 2E-25 6.8E-30 217.7 19.4 241 178-421 80-356 (365)
20 2pl2_A Hypothetical conserved 99.9 2.3E-24 7.8E-29 195.8 23.9 181 229-434 2-194 (217)
21 3vtx_A MAMA; tetratricopeptide 99.9 3.1E-24 1.1E-28 188.7 23.8 168 199-390 6-173 (184)
22 3cv0_A Peroxisome targeting si 99.9 5.6E-25 1.9E-29 209.8 20.4 243 178-423 36-317 (327)
23 3vtx_A MAMA; tetratricopeptide 99.9 7.3E-24 2.5E-28 186.3 25.6 172 230-425 3-174 (184)
24 2ho1_A Type 4 fimbrial biogene 99.9 1.6E-23 5.3E-28 193.1 27.5 209 198-430 37-247 (252)
25 2xpi_A Anaphase-promoting comp 99.9 2.9E-23 9.9E-28 215.4 31.6 252 180-435 289-560 (597)
26 2vq2_A PILW, putative fimbrial 99.9 6.5E-23 2.2E-27 184.6 29.0 210 197-430 7-220 (225)
27 3u4t_A TPR repeat-containing p 99.9 4.3E-24 1.5E-28 199.0 21.5 230 199-430 4-259 (272)
28 3fp2_A TPR repeat-containing p 99.9 2.8E-23 9.4E-28 212.4 27.9 246 177-426 39-412 (537)
29 3fp2_A TPR repeat-containing p 99.9 3.9E-23 1.3E-27 211.3 27.2 248 179-430 218-500 (537)
30 4abn_A Tetratricopeptide repea 99.9 1.1E-23 3.6E-28 214.2 22.8 210 182-417 87-317 (474)
31 4i17_A Hypothetical protein; T 99.9 7.2E-23 2.5E-27 186.4 23.5 210 197-430 6-218 (228)
32 4gyw_A UDP-N-acetylglucosamine 99.9 2.2E-23 7.6E-28 221.0 23.1 171 228-422 5-175 (723)
33 2gw1_A Mitochondrial precursor 99.9 1.6E-23 5.4E-28 212.6 20.1 249 179-430 205-487 (514)
34 4gyw_A UDP-N-acetylglucosamine 99.9 3.5E-23 1.2E-27 219.5 21.3 171 196-390 7-177 (723)
35 2gw1_A Mitochondrial precursor 99.9 4.1E-22 1.4E-26 202.1 28.1 248 178-429 21-375 (514)
36 2q7f_A YRRB protein; TPR, prot 99.9 3.9E-22 1.3E-26 182.1 24.4 204 178-406 38-241 (243)
37 3mkr_A Coatomer subunit epsilo 99.9 3E-22 1E-26 190.3 23.9 205 199-430 66-273 (291)
38 4abn_A Tetratricopeptide repea 99.9 2.1E-22 7.3E-27 204.5 23.1 194 212-430 82-296 (474)
39 1ouv_A Conserved hypothetical 99.9 4.8E-21 1.6E-25 179.2 30.5 219 196-426 4-256 (273)
40 4g1t_A Interferon-induced prot 99.9 5.5E-22 1.9E-26 199.9 25.3 247 180-428 68-370 (472)
41 4g1t_A Interferon-induced prot 99.9 1.7E-21 5.8E-26 196.3 28.1 238 197-435 50-344 (472)
42 4i17_A Hypothetical protein; T 99.9 6.1E-22 2.1E-26 180.3 22.3 156 229-408 4-169 (228)
43 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.7E-22 5.8E-27 188.0 18.6 224 178-427 20-250 (275)
44 2ond_A Cleavage stimulation fa 99.9 1.1E-21 3.6E-26 187.7 24.3 220 181-425 34-274 (308)
45 3uq3_A Heat shock protein STI1 99.9 1.4E-21 4.9E-26 179.6 21.8 201 231-434 4-216 (258)
46 1xnf_A Lipoprotein NLPI; TPR, 99.9 9.4E-22 3.2E-26 183.0 20.1 209 177-415 57-269 (275)
47 3u4t_A TPR repeat-containing p 99.9 5.2E-22 1.8E-26 184.8 17.7 225 178-406 18-269 (272)
48 4a1s_A PINS, partner of inscut 99.9 8.3E-22 2.9E-26 194.8 17.7 249 177-428 62-379 (411)
49 2ho1_A Type 4 fimbrial biogene 99.9 3E-20 1E-24 170.9 25.0 196 178-398 52-249 (252)
50 3sf4_A G-protein-signaling mod 99.9 3.6E-21 1.2E-25 189.0 19.9 245 178-425 24-340 (406)
51 3sf4_A G-protein-signaling mod 99.9 1.5E-21 5.3E-26 191.6 16.8 228 196-425 7-300 (406)
52 4a1s_A PINS, partner of inscut 99.9 1.1E-21 3.9E-26 193.8 15.9 226 198-425 48-336 (411)
53 3qky_A Outer membrane assembly 99.9 9.4E-21 3.2E-25 176.3 21.0 209 196-411 13-251 (261)
54 2pzi_A Probable serine/threoni 99.9 4.6E-21 1.6E-25 203.2 20.5 184 196-407 392-583 (681)
55 3ro2_A PINS homolog, G-protein 99.9 2.7E-21 9.1E-26 183.9 16.4 245 178-425 20-336 (338)
56 3ro2_A PINS homolog, G-protein 99.9 3.9E-21 1.4E-25 182.7 17.6 225 199-425 6-296 (338)
57 2vq2_A PILW, putative fimbrial 99.9 6.7E-20 2.3E-24 164.7 23.8 180 227-430 3-186 (225)
58 4ga2_A E3 SUMO-protein ligase 99.9 1.7E-21 5.8E-26 166.4 11.1 147 203-372 2-149 (150)
59 3as5_A MAMA; tetratricopeptide 99.9 8.1E-20 2.8E-24 158.7 22.0 173 232-428 8-180 (186)
60 3nf1_A KLC 1, kinesin light ch 99.9 1E-20 3.4E-25 178.9 17.4 205 196-424 25-310 (311)
61 3urz_A Uncharacterized protein 99.9 1.8E-20 6.1E-25 168.9 17.6 177 198-400 4-198 (208)
62 3qky_A Outer membrane assembly 99.9 6E-20 2E-24 170.8 21.3 182 225-430 8-233 (261)
63 3as5_A MAMA; tetratricopeptide 99.8 9.5E-20 3.2E-24 158.3 20.9 171 198-392 8-178 (186)
64 3urz_A Uncharacterized protein 99.8 2.6E-20 9E-25 167.8 17.4 176 231-430 3-195 (208)
65 3mkr_A Coatomer subunit epsilo 99.8 5.3E-19 1.8E-23 167.9 26.9 203 180-415 82-288 (291)
66 2ond_A Cleavage stimulation fa 99.8 1E-19 3.4E-24 174.0 21.6 183 215-421 33-232 (308)
67 4ga2_A E3 SUMO-protein ligase 99.8 5.1E-21 1.7E-25 163.4 10.7 147 237-407 2-149 (150)
68 1qqe_A Vesicular transport pro 99.8 6.2E-20 2.1E-24 174.2 15.6 203 201-427 40-275 (292)
69 3dra_A Protein farnesyltransfe 99.8 8E-19 2.8E-23 167.0 22.7 223 181-427 51-294 (306)
70 2pzi_A Probable serine/threoni 99.8 6.7E-20 2.3E-24 194.2 16.5 180 227-434 389-577 (681)
71 3edt_B KLC 2, kinesin light ch 99.8 2E-19 7E-24 167.0 15.6 190 209-422 12-282 (283)
72 1ouv_A Conserved hypothetical 99.8 1.6E-17 5.5E-22 155.1 27.5 186 228-423 2-217 (273)
73 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.5E-18 1.2E-22 155.6 21.6 189 198-426 4-218 (225)
74 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.4E-18 1.2E-22 155.7 20.5 193 177-392 18-218 (225)
75 2ooe_A Cleavage stimulation fa 99.8 4.4E-18 1.5E-22 174.8 23.1 218 183-424 258-495 (530)
76 2r5s_A Uncharacterized protein 99.8 5.3E-19 1.8E-23 154.6 13.8 162 235-420 9-172 (176)
77 3qou_A Protein YBBN; thioredox 99.8 2.7E-18 9.3E-23 162.5 19.6 169 228-420 113-283 (287)
78 2r5s_A Uncharacterized protein 99.8 5.1E-19 1.7E-23 154.7 12.8 164 199-386 7-172 (176)
79 4gco_A Protein STI-1; structur 99.8 1.8E-18 6.3E-23 142.9 14.8 117 227-366 8-124 (126)
80 2vsy_A XCC0866; transferase, g 99.8 6.8E-18 2.3E-22 175.0 22.2 165 211-399 2-169 (568)
81 1qqe_A Vesicular transport pro 99.8 1.8E-18 6.3E-23 164.0 16.4 178 213-428 32-235 (292)
82 3ulq_A Response regulator aspa 99.8 1.1E-18 3.8E-23 171.5 15.2 222 201-425 106-372 (383)
83 4gco_A Protein STI-1; structur 99.8 3.5E-18 1.2E-22 141.3 14.9 122 257-402 4-125 (126)
84 3dss_A Geranylgeranyl transfer 99.8 1.7E-16 5.9E-21 151.9 26.8 238 181-428 48-311 (331)
85 3qou_A Protein YBBN; thioredox 99.8 1.1E-17 3.7E-22 158.4 17.9 167 196-386 115-283 (287)
86 2xm6_A Protein corresponding t 99.8 2.1E-16 7E-21 160.7 28.5 229 181-424 169-435 (490)
87 2vsy_A XCC0866; transferase, g 99.8 2.6E-17 9.1E-22 170.5 21.4 160 245-428 2-164 (568)
88 1p5q_A FKBP52, FK506-binding p 99.8 8.1E-20 2.8E-24 177.2 1.4 152 246-421 127-294 (336)
89 1hz4_A MALT regulatory protein 99.8 5E-17 1.7E-21 158.8 20.8 244 178-423 29-324 (373)
90 2ooe_A Cleavage stimulation fa 99.7 8.5E-17 2.9E-21 165.2 22.2 188 215-426 255-459 (530)
91 2xm6_A Protein corresponding t 99.7 9.3E-16 3.2E-20 155.9 29.5 212 198-421 111-360 (490)
92 3dss_A Geranylgeranyl transfer 99.7 3E-16 1E-20 150.3 24.1 194 210-426 41-272 (331)
93 3dra_A Protein farnesyltransfe 99.7 2.9E-16 9.8E-21 149.4 23.3 189 212-422 47-251 (306)
94 3edt_B KLC 2, kinesin light ch 99.7 1.9E-17 6.5E-22 153.6 14.7 209 178-388 16-282 (283)
95 3q15_A PSP28, response regulat 99.7 3.6E-17 1.2E-21 160.5 17.4 221 200-422 103-366 (378)
96 3nf1_A KLC 1, kinesin light ch 99.7 2.4E-18 8.3E-23 162.4 8.3 211 178-390 42-310 (311)
97 3gyz_A Chaperone protein IPGC; 99.7 8E-18 2.7E-22 143.7 10.4 112 255-390 25-136 (151)
98 3gyz_A Chaperone protein IPGC; 99.7 1.1E-17 3.6E-22 142.9 9.8 121 283-426 18-138 (151)
99 1p5q_A FKBP52, FK506-binding p 99.7 1.1E-17 3.7E-22 162.2 10.9 154 210-387 125-294 (336)
100 2ifu_A Gamma-SNAP; membrane fu 99.7 6.9E-17 2.3E-21 154.3 14.8 163 239-427 43-229 (307)
101 3ulq_A Response regulator aspa 99.7 4E-17 1.4E-21 160.3 13.4 211 177-390 117-371 (383)
102 3rjv_A Putative SEL1 repeat pr 99.7 4E-16 1.4E-20 140.7 18.7 177 215-422 3-198 (212)
103 3q7a_A Farnesyltransferase alp 99.7 2E-15 6.9E-20 145.2 24.2 223 178-424 69-335 (349)
104 4f3v_A ESX-1 secretion system 99.7 1.5E-17 5.1E-22 155.2 8.8 193 211-429 19-244 (282)
105 2c2l_A CHIP, carboxy terminus 99.7 2.8E-17 9.6E-22 155.1 10.7 197 197-422 3-200 (281)
106 1dce_A Protein (RAB geranylger 99.7 3.7E-17 1.3E-21 169.0 12.5 188 214-424 45-270 (567)
107 2fo7_A Synthetic consensus TPR 99.7 3E-15 1E-19 122.2 20.5 133 234-390 3-135 (136)
108 2vgx_A Chaperone SYCD; alterna 99.7 6.2E-17 2.1E-21 137.6 10.4 118 219-359 8-125 (148)
109 1hz4_A MALT regulatory protein 99.7 1.6E-15 5.3E-20 148.1 21.6 224 199-424 15-285 (373)
110 2vgx_A Chaperone SYCD; alterna 99.7 9.7E-17 3.3E-21 136.4 10.1 120 252-395 7-126 (148)
111 2fo7_A Synthetic consensus TPR 99.7 6.1E-15 2.1E-19 120.4 20.0 134 267-424 2-135 (136)
112 3rjv_A Putative SEL1 repeat pr 99.7 3.2E-15 1.1E-19 134.8 18.8 186 181-400 4-208 (212)
113 2xcb_A PCRH, regulatory protei 99.7 3.2E-16 1.1E-20 131.8 11.1 122 220-364 6-127 (142)
114 2ifu_A Gamma-SNAP; membrane fu 99.7 1.6E-15 5.6E-20 144.7 17.2 187 200-413 38-253 (307)
115 3e4b_A ALGK; tetratricopeptide 99.7 9.8E-15 3.4E-19 147.1 22.6 189 200-422 178-388 (452)
116 2fbn_A 70 kDa peptidylprolyl i 99.7 2.2E-16 7.6E-21 140.4 9.4 182 203-426 9-191 (198)
117 2e2e_A Formate-dependent nitri 99.6 1.2E-15 4.2E-20 132.7 13.4 131 207-360 19-152 (177)
118 2xcb_A PCRH, regulatory protei 99.6 4.6E-16 1.6E-20 130.8 10.3 125 253-401 5-129 (142)
119 3upv_A Heat shock protein STI1 99.6 5.9E-15 2E-19 120.9 15.7 113 232-367 4-122 (126)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.1E-14 3.9E-19 130.1 18.7 133 233-392 7-155 (213)
121 2fbn_A 70 kDa peptidylprolyl i 99.6 6.2E-16 2.1E-20 137.5 10.2 109 199-308 39-163 (198)
122 1a17_A Serine/threonine protei 99.6 2.3E-14 8E-19 122.2 19.7 129 233-385 14-144 (166)
123 2e2e_A Formate-dependent nitri 99.6 6.5E-15 2.2E-19 128.1 16.1 130 242-395 20-152 (177)
124 3upv_A Heat shock protein STI1 99.6 1.1E-14 3.7E-19 119.3 15.9 117 264-404 2-124 (126)
125 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.1E-14 3.9E-19 130.0 17.5 132 199-356 7-154 (213)
126 2qfc_A PLCR protein; TPR, HTH, 99.6 2.9E-14 1E-18 134.8 21.0 172 228-423 71-268 (293)
127 1a17_A Serine/threonine protei 99.6 2.6E-14 8.8E-19 121.9 18.7 133 266-422 13-147 (166)
128 3e4b_A ALGK; tetratricopeptide 99.6 3.8E-14 1.3E-18 142.7 21.9 193 197-421 140-351 (452)
129 3q15_A PSP28, response regulat 99.6 5E-15 1.7E-19 145.2 15.1 167 234-424 103-293 (378)
130 3sz7_A HSC70 cochaperone (SGT) 99.6 1.2E-14 4E-19 125.1 15.0 112 231-365 10-121 (164)
131 4f3v_A ESX-1 secretion system 99.6 1.5E-16 5E-21 148.5 3.0 197 178-401 21-250 (282)
132 2c2l_A CHIP, carboxy terminus 99.6 2.1E-15 7.2E-20 142.2 10.8 168 229-425 1-168 (281)
133 2vyi_A SGTA protein; chaperone 99.6 2E-14 6.9E-19 116.9 15.0 120 230-372 10-129 (131)
134 2lni_A Stress-induced-phosphop 99.6 1.9E-14 6.6E-19 117.8 14.6 116 232-370 16-131 (133)
135 4gcn_A Protein STI-1; structur 99.6 1.5E-14 5.1E-19 119.4 13.8 116 232-364 8-123 (127)
136 2qfc_A PLCR protein; TPR, HTH, 99.6 7.9E-14 2.7E-18 131.8 20.8 165 200-388 77-267 (293)
137 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.2E-15 4E-20 154.1 8.1 153 209-385 245-413 (457)
138 2vyi_A SGTA protein; chaperone 99.6 3.4E-14 1.2E-18 115.5 15.4 125 261-409 7-131 (131)
139 3sz7_A HSC70 cochaperone (SGT) 99.6 2.6E-14 8.9E-19 122.9 15.0 117 262-402 7-123 (164)
140 3q7a_A Farnesyltransferase alp 99.6 6.2E-14 2.1E-18 134.8 18.9 185 196-403 52-252 (349)
141 2lni_A Stress-induced-phosphop 99.6 2.9E-14 1E-18 116.7 14.4 122 262-407 12-133 (133)
142 1dce_A Protein (RAB geranylger 99.6 1.1E-13 3.8E-18 143.0 21.7 165 243-430 39-230 (567)
143 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.6E-15 5.4E-20 153.1 7.2 147 244-414 246-407 (457)
144 1na0_A Designed protein CTPR3; 99.6 2.3E-13 7.8E-18 109.6 18.6 116 232-370 9-124 (125)
145 3u3w_A Transcriptional activat 99.6 4.5E-14 1.5E-18 133.5 16.0 162 203-387 80-266 (293)
146 4gcn_A Protein STI-1; structur 99.6 5.8E-14 2E-18 115.8 14.6 108 198-307 8-122 (127)
147 3u3w_A Transcriptional activat 99.6 6.1E-14 2.1E-18 132.6 16.6 164 235-422 78-267 (293)
148 3q49_B STIP1 homology and U bo 99.6 9.8E-14 3.3E-18 114.8 15.4 119 227-368 4-127 (137)
149 1na0_A Designed protein CTPR3; 99.6 3.6E-13 1.2E-17 108.4 18.2 121 262-406 4-125 (125)
150 1xi4_A Clathrin heavy chain; a 99.5 4.3E-13 1.5E-17 146.2 23.8 217 196-435 1103-1324(1630)
151 1hxi_A PEX5, peroxisome target 99.5 5.6E-14 1.9E-18 114.9 12.8 102 200-302 19-120 (121)
152 3q49_B STIP1 homology and U bo 99.5 1.3E-13 4.4E-18 114.1 14.9 121 260-404 3-128 (137)
153 1elw_A TPR1-domain of HOP; HOP 99.5 5.6E-13 1.9E-17 106.2 17.1 74 234-308 6-79 (118)
154 3rkv_A Putative peptidylprolyl 99.5 8E-14 2.7E-18 119.5 12.8 115 198-313 11-144 (162)
155 2hr2_A Hypothetical protein; a 99.5 4.9E-14 1.7E-18 119.7 10.9 110 198-308 11-143 (159)
156 1hxi_A PEX5, peroxisome target 99.5 1.1E-13 3.9E-18 113.0 12.7 96 331-427 25-120 (121)
157 3rkv_A Putative peptidylprolyl 99.5 1.6E-13 5.3E-18 117.7 14.0 113 232-367 11-142 (162)
158 1elw_A TPR1-domain of HOP; HOP 99.5 5.2E-13 1.8E-17 106.5 15.8 112 198-310 4-115 (118)
159 1wao_1 Serine/threonine protei 99.5 2.1E-14 7.3E-19 145.6 9.3 135 199-356 7-154 (477)
160 1b89_A Protein (clathrin heavy 99.5 2.6E-14 8.8E-19 140.8 9.1 215 198-435 32-251 (449)
161 4e6h_A MRNA 3'-END-processing 99.5 2.2E-12 7.4E-17 135.5 24.3 214 215-430 326-579 (679)
162 3gw4_A Uncharacterized protein 99.5 1.5E-13 5.3E-18 121.3 13.3 92 331-423 74-178 (203)
163 3mv2_B Coatomer subunit epsilo 99.5 3.4E-13 1.2E-17 127.3 16.1 187 217-430 85-291 (310)
164 2dba_A Smooth muscle cell asso 99.5 5.1E-13 1.8E-17 111.4 15.3 112 196-308 26-140 (148)
165 3gw4_A Uncharacterized protein 99.5 2.2E-13 7.4E-18 120.3 13.5 157 209-389 3-178 (203)
166 2hr2_A Hypothetical protein; a 99.5 2.1E-13 7.2E-18 115.8 12.6 110 268-401 13-145 (159)
167 1wao_1 Serine/threonine protei 99.5 1.4E-14 4.8E-19 146.9 6.3 136 232-391 6-154 (477)
168 2dba_A Smooth muscle cell asso 99.5 8.1E-13 2.8E-17 110.2 15.8 117 227-366 23-142 (148)
169 2if4_A ATFKBP42; FKBP-like, al 99.5 2.4E-14 8E-19 138.7 6.0 159 227-426 174-333 (338)
170 2if4_A ATFKBP42; FKBP-like, al 99.5 7.7E-14 2.6E-18 135.1 8.8 138 198-358 179-334 (338)
171 2xev_A YBGF; tetratricopeptide 99.5 2E-12 7E-17 105.5 16.0 112 199-311 3-120 (129)
172 2kck_A TPR repeat; tetratricop 99.5 5.7E-13 2E-17 105.3 12.0 106 297-425 2-110 (112)
173 1elr_A TPR2A-domain of HOP; HO 99.5 1.3E-12 4.3E-17 106.2 14.0 118 231-372 3-127 (131)
174 2xev_A YBGF; tetratricopeptide 99.4 3.4E-12 1.1E-16 104.2 15.9 67 331-398 47-116 (129)
175 1zu2_A Mitochondrial import re 99.4 3.7E-13 1.3E-17 114.0 10.2 100 209-308 13-132 (158)
176 1elr_A TPR2A-domain of HOP; HO 99.4 1.7E-12 5.7E-17 105.5 13.1 117 265-406 3-126 (131)
177 2kck_A TPR repeat; tetratricop 99.4 1.9E-12 6.6E-17 102.2 13.1 104 196-300 4-110 (112)
178 1ihg_A Cyclophilin 40; ppiase 99.4 2E-12 6.8E-17 126.7 15.0 140 232-413 223-362 (370)
179 4b4t_Q 26S proteasome regulato 99.4 2.4E-12 8.4E-17 127.6 15.4 201 198-422 4-246 (434)
180 1zu2_A Mitochondrial import re 99.4 1.4E-12 4.8E-17 110.5 11.5 105 243-358 13-126 (158)
181 1ihg_A Cyclophilin 40; ppiase 99.4 1.9E-12 6.6E-17 126.8 14.1 122 267-430 224-345 (370)
182 3k9i_A BH0479 protein; putativ 99.4 6.9E-13 2.4E-17 107.3 8.7 98 210-308 2-102 (117)
183 1xi4_A Clathrin heavy chain; a 99.4 2.3E-11 7.9E-16 132.8 22.7 207 196-417 1132-1380(1630)
184 3k9i_A BH0479 protein; putativ 99.4 1.2E-12 4.1E-17 105.9 8.1 98 282-402 5-105 (117)
185 3ro3_A PINS homolog, G-protein 99.4 7E-12 2.4E-16 105.4 13.0 132 233-388 10-159 (164)
186 3ro3_A PINS homolog, G-protein 99.3 8.8E-12 3E-16 104.8 12.3 135 266-424 9-161 (164)
187 1b89_A Protein (clathrin heavy 99.3 3.9E-13 1.3E-17 132.4 3.9 217 179-418 77-308 (449)
188 3mv2_B Coatomer subunit epsilo 99.3 6.5E-11 2.2E-15 111.7 18.2 187 182-397 85-292 (310)
189 4e6h_A MRNA 3'-END-processing 99.2 4.9E-10 1.7E-14 117.6 20.6 208 183-393 329-576 (679)
190 2kat_A Uncharacterized protein 99.2 1.2E-10 4.2E-15 93.3 12.2 98 285-405 3-102 (115)
191 2kat_A Uncharacterized protein 99.2 2.9E-10 9.8E-15 91.1 13.0 93 216-309 3-97 (115)
192 2l6j_A TPR repeat-containing p 99.2 2.9E-11 9.8E-16 95.7 6.1 86 331-417 12-103 (111)
193 4b4t_Q 26S proteasome regulato 99.2 6E-10 2E-14 110.3 16.6 168 233-424 5-207 (434)
194 2l6j_A TPR repeat-containing p 99.2 3.2E-11 1.1E-15 95.4 5.8 92 198-290 4-101 (111)
195 1na3_A Designed protein CTPR2; 99.1 4.8E-10 1.6E-14 85.1 11.6 79 233-312 10-88 (91)
196 1na3_A Designed protein CTPR2; 99.1 5.4E-10 1.9E-14 84.8 11.8 75 331-406 17-91 (91)
197 3u64_A Protein TP_0956; tetrat 99.1 2.6E-09 8.8E-14 98.6 15.5 183 215-425 49-273 (301)
198 2kc7_A BFR218_protein; tetratr 99.0 4E-10 1.4E-14 87.5 7.5 91 201-300 3-94 (99)
199 3ma5_A Tetratricopeptide repea 99.0 1.6E-09 5.4E-14 84.8 10.2 82 227-309 2-85 (100)
200 1klx_A Cysteine rich protein B 99.0 6.6E-09 2.3E-13 86.5 14.4 59 213-277 10-68 (138)
201 3ma5_A Tetratricopeptide repea 99.0 2.1E-09 7.2E-14 84.1 10.5 88 296-406 2-91 (100)
202 1klx_A Cysteine rich protein B 99.0 1.1E-08 3.7E-13 85.2 14.9 121 246-400 9-137 (138)
203 2kc7_A BFR218_protein; tetratr 99.0 1.2E-09 4E-14 84.8 7.6 87 331-426 8-95 (99)
204 3ly7_A Transcriptional activat 99.0 4.4E-08 1.5E-12 94.1 19.3 147 222-392 184-344 (372)
205 3n71_A Histone lysine methyltr 98.9 4.2E-09 1.4E-13 106.5 11.9 129 236-388 313-465 (490)
206 3ly7_A Transcriptional activat 98.9 4.7E-08 1.6E-12 93.9 18.0 149 257-427 185-345 (372)
207 2uy1_A Cleavage stimulation fa 98.9 2E-07 6.9E-12 94.5 23.6 192 214-420 195-412 (493)
208 3n71_A Histone lysine methyltr 98.9 8.2E-09 2.8E-13 104.3 11.7 123 275-421 318-464 (490)
209 2uy1_A Cleavage stimulation fa 98.8 1.1E-06 3.7E-11 89.1 24.3 201 212-418 151-380 (493)
210 3u64_A Protein TP_0956; tetrat 98.7 2.7E-07 9.4E-12 85.2 13.9 108 260-390 146-272 (301)
211 1pc2_A Mitochondria fission pr 98.6 3.9E-07 1.3E-11 76.2 12.2 96 283-401 14-114 (152)
212 3bee_A Putative YFRE protein; 98.6 2.7E-07 9.4E-12 71.1 10.5 72 353-424 2-75 (93)
213 3bee_A Putative YFRE protein; 98.6 2.9E-07 9.8E-12 71.0 9.5 71 228-299 2-75 (93)
214 1pc2_A Mitochondria fission pr 98.5 4.9E-07 1.7E-11 75.6 10.5 93 338-431 13-110 (152)
215 3qww_A SET and MYND domain-con 98.5 3.4E-07 1.2E-11 91.0 9.4 95 335-430 310-425 (433)
216 2v5f_A Prolyl 4-hydroxylase su 98.5 1.6E-06 5.5E-11 68.1 11.0 74 200-273 7-87 (104)
217 2v5f_A Prolyl 4-hydroxylase su 98.4 2.4E-06 8.2E-11 67.1 11.9 70 331-401 13-89 (104)
218 3qww_A SET and MYND domain-con 98.4 2.3E-06 7.8E-11 85.0 14.0 98 207-305 307-425 (433)
219 3qwp_A SET and MYND domain-con 98.3 2.4E-06 8.1E-11 84.9 11.1 109 239-370 294-426 (429)
220 3qwp_A SET and MYND domain-con 98.3 1.3E-06 4.6E-11 86.7 8.7 99 331-430 295-414 (429)
221 4g26_A Pentatricopeptide repea 98.2 0.00021 7.1E-09 72.4 22.7 163 235-421 29-204 (501)
222 4g26_A Pentatricopeptide repea 98.2 0.00045 1.5E-08 69.9 24.5 157 206-387 34-204 (501)
223 4h7y_A Dual specificity protei 98.1 0.00011 3.8E-09 60.5 13.7 106 227-356 8-127 (161)
224 4h7y_A Dual specificity protei 98.1 7.4E-05 2.5E-09 61.5 12.6 112 295-430 7-132 (161)
225 1nzn_A CGI-135 protein, fissio 98.0 9.2E-05 3.1E-09 59.6 11.3 96 283-401 17-117 (126)
226 1nzn_A CGI-135 protein, fissio 97.9 8.5E-05 2.9E-09 59.8 9.6 94 336-430 14-112 (126)
227 3ffl_A Anaphase-promoting comp 97.7 0.00013 4.6E-09 61.3 8.0 104 331-435 28-165 (167)
228 3ffl_A Anaphase-promoting comp 97.2 0.0018 6.3E-08 54.4 9.3 92 200-292 22-147 (167)
229 1y8m_A FIS1; mitochondria, unk 97.1 0.018 6.3E-07 46.9 13.8 81 298-401 36-120 (144)
230 3o48_A Mitochondria fission 1 97.1 0.0032 1.1E-07 50.7 9.3 79 300-401 39-121 (134)
231 1y8m_A FIS1; mitochondria, unk 97.0 0.011 3.7E-07 48.3 12.2 77 354-430 36-115 (144)
232 3o48_A Mitochondria fission 1 96.9 0.0057 1.9E-07 49.3 9.1 75 356-430 39-116 (134)
233 4gns_B Protein CSD3, chitin bi 96.5 0.014 4.9E-07 61.3 11.7 124 245-384 261-397 (754)
234 3mkq_A Coatomer beta'-subunit; 96.5 0.15 5.2E-06 53.8 19.8 95 209-325 610-705 (814)
235 3txn_A 26S proteasome regulato 96.4 0.13 4.3E-06 49.9 16.9 166 233-421 20-210 (394)
236 3mkq_A Coatomer beta'-subunit; 96.1 0.11 3.6E-06 55.0 15.8 165 204-411 635-802 (814)
237 1zbp_A Hypothetical protein VP 96.0 0.075 2.6E-06 48.3 12.2 122 207-355 6-132 (273)
238 4gns_B Protein CSD3, chitin bi 96.0 0.055 1.9E-06 56.9 12.9 115 283-418 265-397 (754)
239 3kae_A CDC27, possible protein 95.9 0.64 2.2E-05 39.0 18.5 45 381-425 196-241 (242)
240 2ff4_A Probable regulatory pro 95.7 0.3 1E-05 47.2 16.1 86 334-420 126-233 (388)
241 1zbp_A Hypothetical protein VP 95.7 0.12 4.1E-06 46.9 12.0 95 332-427 6-135 (273)
242 3mkq_B Coatomer subunit alpha; 95.6 0.58 2E-05 39.7 15.1 101 242-384 15-115 (177)
243 2ff4_A Probable regulatory pro 95.3 0.3 1E-05 47.3 14.4 59 269-350 174-232 (388)
244 3mkq_B Coatomer subunit alpha; 95.2 0.26 9E-06 41.8 11.8 47 207-258 14-60 (177)
245 1qsa_A Protein (soluble lytic 94.7 3.2 0.00011 42.6 20.8 87 339-428 268-354 (618)
246 1ya0_A SMG-7 transcript varian 94.4 0.18 6.2E-06 50.5 10.1 79 200-278 154-232 (497)
247 3txn_A 26S proteasome regulato 94.3 0.41 1.4E-05 46.3 12.1 166 199-388 20-211 (394)
248 3kae_A CDC27, possible protein 93.7 0.83 2.8E-05 38.3 11.1 91 331-427 41-149 (242)
249 1ya0_A SMG-7 transcript varian 93.6 0.48 1.7E-05 47.3 11.6 73 331-404 160-232 (497)
250 3spa_A Mtrpol, DNA-directed RN 93.0 1.2 4E-05 48.2 13.7 98 199-297 128-231 (1134)
251 4fhn_B Nucleoporin NUP120; pro 92.3 6.6 0.00022 43.5 19.5 99 225-324 835-961 (1139)
252 3spa_A Mtrpol, DNA-directed RN 91.9 5.7 0.00019 43.1 17.2 97 233-330 128-230 (1134)
253 4b4t_P 26S proteasome regulato 91.5 1.4 4.8E-05 43.4 11.6 97 233-352 138-247 (445)
254 4b4t_R RPN7, 26S proteasome re 91.2 0.55 1.9E-05 46.1 8.4 104 232-354 131-239 (429)
255 1qsa_A Protein (soluble lytic 90.8 8.5 0.00029 39.5 17.0 51 362-415 386-436 (618)
256 4fhn_B Nucleoporin NUP120; pro 90.7 3.5 0.00012 45.8 15.0 162 238-408 818-987 (1139)
257 4b4t_P 26S proteasome regulato 90.5 14 0.00047 36.2 24.3 184 212-420 30-246 (445)
258 4b4t_S RPN3, 26S proteasome re 89.5 0.83 2.8E-05 45.6 7.8 58 331-391 239-303 (523)
259 4b4t_R RPN7, 26S proteasome re 89.4 0.76 2.6E-05 45.0 7.6 100 198-298 131-239 (429)
260 4b4t_S RPN3, 26S proteasome re 86.3 0.35 1.2E-05 48.2 2.9 131 208-356 146-303 (523)
261 4ady_A RPN2, 26S proteasome re 86.1 6.5 0.00022 42.2 12.6 125 198-326 413-549 (963)
262 2wpv_A GET4, UPF0363 protein Y 84.3 26 0.00089 32.4 14.9 27 355-382 132-158 (312)
263 3ubw_A 14-3-3E, 14-3-3 protein 84.1 23 0.00079 31.7 13.8 32 233-264 32-63 (261)
264 1o9d_A 14-3-3-like protein C; 83.0 26 0.00088 31.4 14.2 45 341-385 153-205 (260)
265 3lpz_A GET4 (YOR164C homolog); 78.5 43 0.0015 31.2 23.2 136 264-406 134-296 (336)
266 3lpz_A GET4 (YOR164C homolog); 78.3 44 0.0015 31.2 21.9 77 299-386 134-215 (336)
267 1wy6_A Hypothetical protein ST 75.9 10 0.00036 30.6 7.4 54 208-261 101-154 (172)
268 1wy6_A Hypothetical protein ST 71.3 39 0.0013 27.3 10.1 56 331-387 99-154 (172)
269 4gq2_M Nucleoporin NUP120; bet 66.8 80 0.0027 34.0 14.4 52 238-294 816-867 (950)
270 2br9_A 14-3-3E, 14-3-3 protein 63.0 79 0.0027 27.7 17.6 47 374-420 146-201 (234)
271 3esl_A Checkpoint serine/threo 61.4 63 0.0022 27.7 9.9 82 219-302 58-150 (202)
272 2w2u_A Hypothetical P60 katani 60.7 12 0.00042 27.1 4.6 17 335-351 31-47 (83)
273 2v6y_A AAA family ATPase, P60 60.1 13 0.00044 27.0 4.6 17 335-351 23-39 (83)
274 3ax2_A Mitochondrial import re 60.0 25 0.00085 24.8 5.9 33 236-268 21-53 (73)
275 2npm_A 14-3-3 domain containin 59.2 99 0.0034 27.6 19.5 47 374-420 172-226 (260)
276 3uzd_A 14-3-3 protein gamma; s 57.7 1E+02 0.0035 27.3 17.8 44 233-276 5-49 (248)
277 3iqu_A 14-3-3 protein sigma; s 56.9 1E+02 0.0035 27.1 16.7 30 235-264 11-40 (236)
278 4gq2_M Nucleoporin NUP120; bet 56.2 53 0.0018 35.4 10.7 79 223-302 831-933 (950)
279 4ady_A RPN2, 26S proteasome re 55.5 79 0.0027 34.0 11.4 202 203-415 381-617 (963)
280 3esl_A Checkpoint serine/threo 51.6 1.1E+02 0.0039 26.0 14.5 78 344-423 58-146 (202)
281 2crb_A Nuclear receptor bindin 49.6 29 0.001 25.6 4.9 28 232-259 15-42 (97)
282 2wpv_A GET4, UPF0363 protein Y 48.0 1.7E+02 0.0057 26.9 20.6 82 264-351 132-216 (312)
283 3t5x_A PCI domain-containing p 47.8 41 0.0014 28.8 6.7 34 233-266 15-48 (203)
284 1om2_A Protein (mitochondrial 44.6 51 0.0018 24.5 5.7 25 331-355 28-52 (95)
285 3t5v_B Nuclear mRNA export pro 43.5 1.3E+02 0.0043 29.4 10.1 60 331-391 184-254 (455)
286 3re2_A Predicted protein; meni 43.4 82 0.0028 29.6 8.0 77 197-273 254-343 (472)
287 2o8p_A 14-3-3 domain containin 43.3 1.7E+02 0.0057 25.5 20.8 56 331-386 133-196 (227)
288 3t5x_A PCI domain-containing p 42.8 55 0.0019 28.0 6.7 26 331-356 22-47 (203)
289 3lvg_A Clathrin heavy chain 1; 42.3 0.00061 2.1E-08 67.0 -27.4 60 196-260 52-111 (624)
290 2ijq_A Hypothetical protein; s 41.9 1E+02 0.0034 25.4 7.7 60 361-421 36-104 (161)
291 2v6x_A Vacuolar protein sortin 41.0 38 0.0013 24.4 4.6 17 335-351 25-41 (85)
292 1om2_A Protein (mitochondrial 41.0 35 0.0012 25.4 4.3 30 236-265 24-53 (95)
293 2ijq_A Hypothetical protein; s 40.5 1.5E+02 0.005 24.4 8.5 60 236-296 36-104 (161)
294 2crb_A Nuclear receptor bindin 40.1 45 0.0015 24.6 4.6 24 360-384 18-41 (97)
295 3ax2_A Mitochondrial import re 38.9 82 0.0028 22.1 5.8 29 363-392 23-51 (73)
296 1wfd_A Hypothetical protein 15 37.9 63 0.0022 23.8 5.4 11 249-259 13-23 (93)
297 2cwy_A Hypothetical protein TT 36.2 1.3E+02 0.0044 22.1 7.1 60 273-351 8-67 (94)
298 2w2u_A Hypothetical P60 katani 35.0 63 0.0022 23.2 4.9 16 243-258 30-45 (83)
299 2cfu_A SDSA1; SDS-hydrolase, l 35.0 83 0.0028 32.3 7.7 48 233-280 450-497 (658)
300 2cpt_A SKD1 protein, vacuolar 34.5 65 0.0022 24.9 5.2 10 250-259 17-26 (117)
301 2o8p_A 14-3-3 domain containin 34.2 2.3E+02 0.008 24.6 10.2 53 244-296 137-197 (227)
302 3t5v_B Nuclear mRNA export pro 33.4 77 0.0026 30.9 6.7 60 206-265 184-254 (455)
303 2v6y_A AAA family ATPase, P60 32.6 72 0.0025 22.9 4.9 16 243-258 22-37 (83)
304 2cfu_A SDSA1; SDS-hydrolase, l 31.1 1.5E+02 0.005 30.4 8.8 48 358-406 450-497 (658)
305 4a5x_A MITD1, MIT domain-conta 30.4 78 0.0027 22.9 4.7 21 366-387 25-45 (86)
306 4gq4_A Menin; tumor suppressor 30.3 2.5E+02 0.0084 27.0 9.1 79 197-275 261-352 (489)
307 4a5x_A MITD1, MIT domain-conta 30.0 84 0.0029 22.7 4.9 17 243-259 27-43 (86)
308 3u84_A Menin; MLL, JUND, ledgf 29.6 1.5E+02 0.0052 28.4 7.6 75 198-273 277-365 (550)
309 3lxu_X Tripeptidyl-peptidase 2 29.6 6.4E+02 0.022 28.2 16.9 64 353-419 1280-1343(1354)
310 2rpa_A Katanin P60 ATPase-cont 28.0 55 0.0019 23.3 3.4 27 235-261 15-41 (78)
311 3ltm_A Alpha-REP4; protein eng 27.7 2.5E+02 0.0087 23.0 15.9 59 357-420 126-184 (211)
312 2dl1_A Spartin; SPG20, MIT, st 26.7 77 0.0026 24.4 4.2 32 283-351 19-50 (116)
313 2v6x_A Vacuolar protein sortin 26.5 1E+02 0.0035 22.0 4.9 18 243-260 24-41 (85)
314 2rpa_A Katanin P60 ATPase-cont 26.5 40 0.0014 24.1 2.4 26 202-227 16-41 (78)
315 1wfd_A Hypothetical protein 15 25.7 1.1E+02 0.0037 22.5 4.9 33 213-260 11-43 (93)
316 2wvi_A Mitotic checkpoint seri 25.5 2.8E+02 0.0095 22.7 9.3 47 251-298 79-127 (164)
317 2cpt_A SKD1 protein, vacuolar 25.4 95 0.0032 23.9 4.7 32 214-260 15-46 (117)
318 2p58_C Putative type III secre 25.3 2.2E+02 0.0076 21.5 7.2 45 331-381 48-92 (116)
319 4b4t_O 26S proteasome regulato 25.1 4.1E+02 0.014 25.0 10.2 89 207-295 85-197 (393)
320 2cwy_A Hypothetical protein TT 22.8 2.3E+02 0.0078 20.7 6.8 55 363-420 7-67 (94)
321 2uwj_G Type III export protein 22.7 2.2E+02 0.0074 21.5 5.8 45 331-381 47-91 (115)
322 3bu8_A Telomeric repeat-bindin 22.5 3.1E+02 0.011 23.7 7.6 41 331-371 122-162 (235)
323 3efz_A 14-3-3 protein; 14-3-3, 21.3 1.2E+02 0.0039 27.3 5.0 51 284-352 169-226 (268)
324 3iqu_A 14-3-3 protein sigma; s 21.2 4.1E+02 0.014 23.1 14.9 32 200-231 10-41 (236)
325 3re2_A Predicted protein; meni 20.1 3.3E+02 0.011 25.7 7.7 43 342-385 276-323 (472)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.6e-28 Score=237.02 Aligned_cols=254 Identities=15% Similarity=0.218 Sum_probs=218.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++++...+..++.+.+ +....+..+|.++...|++++|+.+|+++++.+|++..+|..+|.++...|++++|+..|++
T Consensus 116 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 116 DMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp CSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566666777777777 67778888888888888888888888888888888888888888888888889999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++++|++..++..+|.++...+. +++|+..|++++.++|++..++..+|.++...|++++|...+++++..
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 273 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARI-FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 888888888888888888887764 888999999999888988888888898888999998888888877765
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++...|++++|+..|+++++.+|.++.++..+|.++...|+ +++|+..|++++++.|++..++..+|.++...
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 677788999999999999999999999999999999998888 99999999999999999888999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
|++++|+..|++++++.|++..+.. .+.+
T Consensus 353 g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 9999999999999999888877655 4443
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1e-27 Score=236.10 Aligned_cols=250 Identities=17% Similarity=0.108 Sum_probs=227.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++++..++.+++.+.+ ....+|.++|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44467777888888888 77888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++.+|++..+|..+|.++...++ +++|+..|+++++++|++..++..+|.++...|++++|...+.+.+..
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 999999999999999999888874 999999999999999999999999999999999999999999887765
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++...|++++|+..|+++++++|+++.++..+|.++...|+ +++|+..|++++++.|.+..++..++.++...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 778889999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
|++++|+..|++++++.|+...+..
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999999998766544
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=1e-27 Score=218.09 Aligned_cols=199 Identities=19% Similarity=0.194 Sum_probs=178.7
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 276 VWEL-----------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 276 ~~~~-----------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
+... ++ +++|+..|+++++++|++..++..+| .++...|++++|+.
T Consensus 83 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~lg----------------------~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGY-LEQALSVLKDAERVNPRYAPLHLQRG----------------------LVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHTCSSHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHH
T ss_pred HHHhhhhhhhhcccccC-HHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHcCChHHHHH
Confidence 9999 85 99999999999999999999999999 88999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 345 YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 345 ~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
.|+++++++ +++.+++++|.++..+|+ +++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++.
T Consensus 140 ~~~~al~~~-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 140 SLKQALALE-DTPEIRSALAELYLSMGR-LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHC-CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhcc-cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999 999999999999999999 9999999999999999999999999999999999999999998865
No 4
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=220.77 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=234.0
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~ 256 (436)
+...+..++..++..++ .....+..++.++...|++++|+.+++++++.+|+++.++..+|.++...| ++++|+.+|+
T Consensus 37 ~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115 (330)
T ss_dssp CHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44467778888888888 677888889999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
++++.+|.++.+|..+|.++...++ +++|+.+|+++++..|++..++..+|.++...|++++|...+++++..
T Consensus 116 ~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 116 KATTLEKTYGPAWIAYGHSFAVESE-HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp HHHTTCTTCTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999975 999999999999999999999999999999999999999999987765
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 331 ------LPIQSKGDLEGAEEYFSRAILAN---------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
.++...|++++|+.+|+++++.. |..+.++..+|.++...|+ +++|+..|+++++++|++..++
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-YAEALDYHRQALVLIPQNASTY 273 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhCccchHHH
Confidence 88889999999999999999986 6778999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..+|.++..+|++++|+++|++++++.|+...+..
T Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 308 (330)
T 3hym_B 274 SAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence 99999999999999999999999999999877555
No 5
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.5e-26 Score=225.74 Aligned_cols=227 Identities=10% Similarity=-0.014 Sum_probs=205.2
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|..+|..+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|+++++++|.++.++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHccCchHHHHHHHHHHHH--------------hHHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAY----------ACFLWEMEDDGEDDKAQEEHIQV--------------LPIQ 334 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~~~~~--------------~~~~ 334 (436)
.++ +++|+.+|++++++.|++..++..+ +.++...|++++|...+++++.. .++.
T Consensus 146 ~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSH-QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTC-HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccc-HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 875 9999999999999999876666554 89999999999999999988765 7888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
..|++++|+.+|+++++++|+++.+|..+|.++...|+ +++|+..|+++++++|++..++..+|.++..+|++++|+.+
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChh
Q 013800 415 SDQFQQVAPIRQG 427 (436)
Q Consensus 415 ~~~al~l~p~~~~ 427 (436)
|++++++.|...+
T Consensus 304 ~~~al~~~~~~~~ 316 (365)
T 4eqf_A 304 FLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHhCcccCC
Confidence 9999999887544
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.2e-26 Score=228.83 Aligned_cols=222 Identities=12% Similarity=0.103 Sum_probs=203.0
Q ss_pred hcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH
Q 013800 189 GLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD-LYRAEDYYNHATMADPGDGE 267 (436)
Q Consensus 189 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 267 (436)
++.+.+ .+..+|..+|.++...|++++|+..|+++++++|++..+|.++|.++..+|+ +++|+.+|+++++++|++..
T Consensus 89 ai~~~p-~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 89 QIIYSD-KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp EECCCH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhCCh-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 456666 6778999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
+|+++|.++..+++ +++|+.+|+++++++|++..+|+++| .++..+|++++|+.+|+
T Consensus 168 a~~~~g~~~~~~g~-~~eAl~~~~kal~ldP~~~~a~~~lg----------------------~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 168 VWHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQ----------------------WVIQEFKLWDNELQYVD 224 (382)
T ss_dssp HHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHhCccCHHHHHHHH----------------------HHHHHcCChHHHHHHHH
Confidence 99999999999985 99999999999999999999999999 88888999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHCC--ChHHHHHHHHHHHh
Q 013800 348 RAILANPGDGEIMSQYAKLVWELHHDHDKA-----LCYFERAVQASPADSHVLAAYACFLWETE--EDEDDSKSSDQFQQ 420 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~ 420 (436)
++|+++|++..+|+++|.++..+++.+++| +.+|++++.++|++..+|..++.++...| ++++|++.++++ +
T Consensus 225 ~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~ 303 (382)
T 2h6f_A 225 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q 303 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c
Confidence 999999999999999999999955514788 59999999999999999999999999988 689999999888 8
Q ss_pred hCCCChhHHh-hhhhc
Q 013800 421 VAPIRQGAVT-TANVY 435 (436)
Q Consensus 421 l~p~~~~a~~-~an~y 435 (436)
..|+...+.. ++.+|
T Consensus 304 ~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 304 PSHSSPYLIAFLVDIY 319 (382)
T ss_dssp TTCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 8888766544 44444
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=1.4e-25 Score=216.31 Aligned_cols=250 Identities=12% Similarity=0.086 Sum_probs=230.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP---CHPLLLRNY------------AQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~~~~~~~~l------------a~~~ 242 (436)
++..+..++..++.+.+ ....+|..+|.++...|++++|+..|+++++.+| ++..++..+ |.++
T Consensus 52 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 52 KSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888888 7888999999999999999999999999999999 888888777 7899
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
...|++++|+..++++++..|.++.++..+|.++...++ +++|+..|+++++..|.++.++..+|.++...|++++|..
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE-PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999875 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCH
Q 013800 323 AQEEHIQV------------------------LPIQSKGDLEGAEEYFSRAILANPGDGE----IMSQYAKLVWELHHDH 374 (436)
Q Consensus 323 ~~~~~~~~------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~d~ 374 (436)
.++++++. .++...|++++|+..|+++++..|+++. ++..+|.++...|+ +
T Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~ 288 (359)
T 3ieg_A 210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK-P 288 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC-H
Confidence 99977765 3478899999999999999999999874 46679999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 375 DKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 375 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+...+..
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999887654
No 8
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=1.3e-25 Score=218.48 Aligned_cols=245 Identities=10% Similarity=0.025 Sum_probs=221.3
Q ss_pred CCCChHH-HHHhhcCCCCCC---ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 013800 178 RPVSPPM-YLAMGLGISVPG---FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAED 253 (436)
Q Consensus 178 ~p~~a~~-~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 253 (436)
+...+.. ++..++.+.+.. ....+..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 3445666 788888777732 246789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHccCc
Q 013800 254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA----------------AYACFLWEMEDD 317 (436)
Q Consensus 254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~g~~ 317 (436)
.|+++++++|.++.++..+|.++...++ +++|+..|++++.+.|.+...+. .++.++ ..|++
T Consensus 120 ~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 197 (368)
T 1fch_A 120 ALRRCLELKPDNQTALMALAVSFTNESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF 197 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH
Confidence 9999999999999999999999999875 99999999999999999877665 456665 88999
Q ss_pred hHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 318 GEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 318 ~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
++|...+++++.. .++...|++++|+.+|++++.++|+++.++..+|.++...|+ +++|+..|++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~ 276 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 9999999887654 788899999999999999999999999999999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
+++++|++..++..+|.++..+|++++|+..|++++.+.|..
T Consensus 277 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999998877
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.1e-25 Score=211.00 Aligned_cols=238 Identities=13% Similarity=0.056 Sum_probs=222.7
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.+...+..++..++..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34557888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHH
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAE 343 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~ 343 (436)
+...++++++|+.+|+++++++|.+..++..+|.++...|++++|...+++++.. .++...|++++|+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 9999845999999999999999999999999999999999999999999988876 7888999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCChHHHHHH
Q 013800 344 EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---------PADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
.+|+++++.+|.++.++..+|.++...|+ +++|+..|++++... |....++..+|.++...|++++|+.+
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999 999999999999986 66778999999999999999999999
Q ss_pred HHHHHhhCCCChhHHh-hhhh
Q 013800 415 SDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 415 ~~~al~l~p~~~~a~~-~an~ 434 (436)
|++++++.|....+.. .+.+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~ 279 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYI 279 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHH
T ss_pred HHHHHhhCccchHHHHHHHHH
Confidence 9999999998766544 4443
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=5.9e-25 Score=228.13 Aligned_cols=253 Identities=13% Similarity=0.067 Sum_probs=213.2
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
++..++...+...+ .+..+|..++.++...|++++|+..++++++..|++..++..+|.+|...|++++|+++|+++++
T Consensus 323 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 323 DVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444 34455556666666666666666666666666777788888999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
.+|.+..+|..++.++...++ +++|+.+|+++++..|++..++..++.++...|++++|...+++++..
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGE-HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999888875 999999999999999999999999999999999999999999887765
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILA------NPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.++...|++++|+.+|+++++. +|++ ..+|..+|.++...|+ +++|+..|+++++++|++..++..++.+
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 7888999999999999999998 6664 7899999999999999 9999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013800 402 LWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA 436 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ya 436 (436)
+...|++++|+++|++++++.|+...+.. .+++|+
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999988776 777764
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=7.6e-25 Score=211.17 Aligned_cols=254 Identities=13% Similarity=0.066 Sum_probs=229.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++..++...+ ..+.+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 18 ~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44577888888888888 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC---CCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 258 ATMADP---GDGESWMQY------------AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 258 al~~~p---~~~~~~~~l------------a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
+++.+| .+..++..+ |.++...+ ++++|+.+|+++++..|.++.++..+|.++...|++++|..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 175 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999 888888877 67777776 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHhcCCHHHHH
Q 013800 323 AQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ------------YAKLVWELHHDHDKAL 378 (436)
Q Consensus 323 ~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~g~d~~~A~ 378 (436)
.+.+++.. .++...|++++|+..|+++++..|++..++.. +|.++...|+ +++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~ 254 (359)
T 3ieg_A 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDAT 254 (359)
T ss_dssp HHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 99987765 78889999999999999999999999887654 4888999999 99999
Q ss_pred HHHHHHHHhCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 379 CYFERAVQASPADSH----VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 379 ~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
..|+++++..|++.. ++..+|.++...|++++|+..|++++++.|....... .+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 999999999999874 4667899999999999999999999999998766544 4443
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.8e-24 Score=216.41 Aligned_cols=246 Identities=12% Similarity=0.072 Sum_probs=138.5
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.+..++..++...+ .+..+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++
T Consensus 44 ~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 44 DALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444 34455555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCCC-------------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 261 ADPGD-------------------------------------------------GESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 261 ~~p~~-------------------------------------------------~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
.+|.+ ..++..+|.++...++ +++|+.+|+
T Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~ 201 (450)
T 2y4t_A 123 SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGE-PRKAISDLK 201 (450)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-GGGGHHHHH
T ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 55554 4444444444444432 444444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------------hHHHHcCCHHHHHHHHH
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------------LPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~g~~~~A~~~~~ 347 (436)
++++.+|+++.++..+|.++...|++++|...+++++.. .++...|++++|+.+|+
T Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444444444444444444444444433322 23445566666666666
Q ss_pred HHHHhCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 348 RAILANPGDG----EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 348 ~al~~~p~~~----~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+++++.|.++ .++..+|.++...|+ +++|+..++++++++|++..++..+|.++...|++++|+..|++++++.|
T Consensus 282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 282 SVMKTEPSIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 6666666653 356666666666666 77777777777777777677777777777777777777777777777766
Q ss_pred CChhHH
Q 013800 424 IRQGAV 429 (436)
Q Consensus 424 ~~~~a~ 429 (436)
+.....
T Consensus 361 ~~~~~~ 366 (450)
T 2y4t_A 361 NDQQIR 366 (450)
T ss_dssp SCHHHH
T ss_pred chHHHH
Confidence 665543
No 13
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=7.2e-26 Score=223.34 Aligned_cols=226 Identities=12% Similarity=0.112 Sum_probs=209.2
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD-SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY 255 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 255 (436)
.++..+..++.+++.+.+ .+..+|.++|.++...|+ +++|+.+|+++++++|++..+|+++|.++..+|++++|+..|
T Consensus 111 g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp CCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 356788999999999999 899999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
+++++++|++..+|+++|.++..+++ +++|+.+|+++++++|++..+|+++| .++..
T Consensus 190 ~kal~ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg----------------------~~l~~ 246 (382)
T 2h6f_A 190 ADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRY----------------------FVISN 246 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHH
T ss_pred HHHHHhCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHH
Confidence 99999999999999999999999985 99999999999999999999999999 66666
Q ss_pred -cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Q 013800 336 -KGDLEGA-----EEYFSRAILANPGDGEIMSQYAKLVWELH--HDHDKALCYFERAVQASPADSHVLAAYACFLWETE- 406 (436)
Q Consensus 336 -~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 406 (436)
.|.+++| +.+|+++++++|++..+|++++.++...| + +++|++.++++ +.+|++..++..+|.++..+|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~-~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK-YPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG-CHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc-hHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 4444666 69999999999999999999999999988 5 89999999998 999999999999999999985
Q ss_pred -------C-hHHHHHHHHHH-HhhCCCChhH
Q 013800 407 -------E-DEDDSKSSDQF-QQVAPIRQGA 428 (436)
Q Consensus 407 -------~-~~~A~~~~~~a-l~l~p~~~~a 428 (436)
+ .++|+++|+++ ++++|.....
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~ 355 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEY 355 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 2 58999999999 9999986653
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=9.2e-25 Score=218.54 Aligned_cols=227 Identities=13% Similarity=0.073 Sum_probs=206.7
Q ss_pred CCCChHHHHHhhcCCCCCCCh---hhhhhH------------hhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFD---DAGEVV------------DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~---~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 242 (436)
+++++..++..++.+.+ ... ..|..+ |.++...|++++|+.+|+++++..|.+..++..+|.+|
T Consensus 109 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECF 187 (450)
T ss_dssp CHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 55566777788888877 555 555544 66699999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY------------ACF 310 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l------------a~~ 310 (436)
...|++++|+..|+++++.+|.++.+|..+|.++...++ +++|+.+|++++.++|++...+..+ +.+
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875 9999999999999999999988776 999
Q ss_pred HHHccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 013800 311 LWEMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~ 374 (436)
+...|++++|...+.+++.. .++...|++++|+..++++++++|+++.+|..+|.++...|+ +
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~ 345 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM-Y 345 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-H
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC-H
Confidence 99999999999999987665 678889999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 375 DKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 375 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
++|+..|+++++++|++..++..++.+....++
T Consensus 346 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 346 DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988766543
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=4.9e-25 Score=214.37 Aligned_cols=240 Identities=11% Similarity=0.036 Sum_probs=224.4
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 79 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp CHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45578888999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchH
Q 013800 258 ATMADPGDGESWM----------------QYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 258 al~~~p~~~~~~~----------------~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~ 319 (436)
++...|.+...+. .++.++ ..+ ++++|+.+|+++++.+|. +..++..+|.++...|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS-LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHH-HHH-HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc-cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999877665 466555 666 499999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 320 DDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 320 A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
|+..+++++.. .++...|++++|+..|+++++++|+++.++..+|.++...|+ +++|+..|++++.+
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~ 314 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 99999988876 788899999999999999999999999999999999999999 99999999999999
Q ss_pred CCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 388 SPAD-----------SHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 388 ~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.|++ ..+|..++.++..+|++++|..+++++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9988 899999999999999999999999887765
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=1.5e-24 Score=198.24 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=184.7
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|..+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 46777788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.++ +++|+.+|+++++..|.+..++..+| .++...|++++|+.+++++++..|.++.
T Consensus 104 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 104 KEM-YKEAKDMFEKALRAGMENGDLFYMLG----------------------TVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp TTC-HHHHHHHHHHHHHHTCCSHHHHHHHH----------------------HHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred hcc-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 875 99999999999999999999999999 8889999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++..+|.++...|+ +++|+..|+++++..|.+..++..+|.++...|++++|+..+++++++.|+...+..
T Consensus 161 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 161 ARFQFGMCLANEGM-LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHHHHHTC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999999999887655
No 17
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-24 Score=198.09 Aligned_cols=221 Identities=16% Similarity=0.120 Sum_probs=198.5
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-------GESWM 270 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 270 (436)
+..|..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++++.|.+ +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4578889999999999999999999999999 889999999999999999999999999999998876 78999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCC
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGD 338 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~ 338 (436)
.+|.++...++ +++|+.+|++++++.|. +.++...|++++|...+.+.+.. .++...|+
T Consensus 84 ~l~~~~~~~~~-~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGD-LKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccc-HHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999998875 99999999999998877 34455556667777777655543 78889999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
+++|+.+|+++++.+|.++.++..+|.++...|+ +++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhhC------CCChhHH
Q 013800 419 QQVA------PIRQGAV 429 (436)
Q Consensus 419 l~l~------p~~~~a~ 429 (436)
+++. |......
T Consensus 234 ~~~~~~~~~~p~~~~~~ 250 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREID 250 (258)
T ss_dssp HHHHHHHHTTTTHHHHH
T ss_pred HHhChhhcCCCchHHHH
Confidence 9998 6655443
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=1.4e-24 Score=207.11 Aligned_cols=224 Identities=17% Similarity=0.109 Sum_probs=188.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34667777777778888888888888888888888888888888888888888888888888888888888888877777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHccCchHHHHHHHHHHHH------------h
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAY--------------AC-FLWEMEDDGEDDKAQEEHIQV------------L 331 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~~~~~------------~ 331 (436)
.++ +++|+.+|+++++..|.+...+..+ +. ++...|++++|...+.+.+.. .
T Consensus 102 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHN-ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp TTC-HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 764 8888888888888887777666665 54 566677777777777766654 7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 411 (436)
++...|++++|+.+++++++.+|+++.++..+|.++...|+ +++|+..|+++++..|++..++..+|.++..+|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR-PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 88899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 013800 412 SKSSDQFQQVAPI 424 (436)
Q Consensus 412 ~~~~~~al~l~p~ 424 (436)
++.|++++.+.|.
T Consensus 260 ~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 260 AKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCc
Confidence 9999999999988
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=2e-25 Score=217.69 Aligned_cols=241 Identities=13% Similarity=0.040 Sum_probs=216.8
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++..++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++
T Consensus 80 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158 (365)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 55578889999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 258 ATMADPGDGESWMQY----------AKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 258 al~~~p~~~~~~~~l----------a~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
++++.|.+..++..+ |.++...++ +++|+.+|+++++++|+ ++.++..+|.++...|++++|+..++
T Consensus 159 al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 237 (365)
T 4eqf_A 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237 (365)
T ss_dssp HHHHCHHHHCC-------------------CCHH-HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhCccchHHHhhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999877666555 888888875 99999999999999999 99999999999999999999999999
Q ss_pred HHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Q 013800 326 EHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA--- 390 (436)
Q Consensus 326 ~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~--- 390 (436)
++++. .++...|++++|+.+|+++++++|+++.++.++|.++..+|+ +++|+..|++++++.|+
T Consensus 238 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA-YREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHCC--
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccCC
Confidence 88876 888899999999999999999999999999999999999999 99999999999999887
Q ss_pred ---------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 391 ---------DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 391 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+..+|..++.++..+|+.+.+..+.++.+..
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp ----------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred CcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 3578999999999999999998887765443
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=2.3e-24 Score=195.83 Aligned_cols=181 Identities=17% Similarity=0.064 Sum_probs=170.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...++ +++|+..|+++++++|++..++..+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL-VNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999875 99999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSK-----------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A 377 (436)
.++... |++++|+..|+++++++|+++.++.++|.++..+|+ +++|
T Consensus 81 ----------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A 137 (217)
T 2pl2_A 81 ----------------------EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE-RDKA 137 (217)
T ss_dssp ----------------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHH
T ss_pred ----------------------HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHHH
Confidence 666667 999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 378 LCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 378 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
+..|+++++++ +++.++.++|.++..+|++++|+..|+++++++|.+..+.. .+.+
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 194 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999887654 4443
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=3.1e-24 Score=188.72 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=98.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|.++|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 44555555555555666666666666555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.++ ++.|+..+++++.++|.+..++..+| .++..+|++++|+..|+++++++|.++.
T Consensus 86 ~~~-~~~a~~~~~~a~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 142 (184)
T 3vtx_A 86 IDE-KQAAIDALQRAIALNTVYADAYYKLG----------------------LVYDSMGEHDKAIEAYEKTISIKPGFIR 142 (184)
T ss_dssp TTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCC-HHHHHHHHHHHHHhCccchHHHHHHH----------------------HHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence 543 55555555555555555555555555 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
+|+++|.++..+|+ +++|+..|+++++++|+
T Consensus 143 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 143 AYQSIGLAYEGKGL-RDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHhCCcc
Confidence 55555555555555 55555555555555554
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=5.6e-25 Score=209.76 Aligned_cols=243 Identities=11% Similarity=0.014 Sum_probs=222.4
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++.++..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..+++
T Consensus 36 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114 (327)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44577888888888888 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHH--------------HH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 258 ATMADPGDGESWMQY--------------AK-LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 258 al~~~p~~~~~~~~l--------------a~-~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
+++..|.+...+..+ +. ++...++ +++|+.+++++++..|.+..++..+|.++...|++++|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE-YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHHTSTTTTTC--------------------CCTTSHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 999999988887777 65 5666664 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 323 AQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 323 ~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.+.+++.. .++...|++++|+..|+++++..|++..++..+|.++...|+ +++|+..|++++...|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ-YDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCc
Confidence 99988876 788899999999999999999999999999999999999999 99999999999999999
Q ss_pred ------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 391 ------------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 391 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+..++..++.++..+|++++|...++++++..|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 273 GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999998877644
No 23
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=7.3e-24 Score=186.30 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
+++.+|+++|.++..+|++++|+..|+++++++|+++.++..+|.++...++ +++|+..+++++...|++..++..+|
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~- 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL-PNDAIESLKKFVVLDTTSAEAYYILG- 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCchhHHHHHHHH-
Confidence 5778999999999999999999999999999999999999999999999975 99999999999999999999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
.++...++++.|+..+.+++.++|.+..++..+|.++..+|+ +++|+..|+++++++|
T Consensus 81 ---------------------~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 81 ---------------------SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISIKP 138 (184)
T ss_dssp ---------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT
T ss_pred ---------------------HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHhcc
Confidence 888899999999999999999999999999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 390 ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 390 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.++.++..+|.++..+|++++|+..|+++++++|+.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999999864
No 24
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=1.6e-23 Score=193.08 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=200.0
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 278 ELHRDQHRALTYFERAAL--AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
..++ +++|+.+|++++. ..|.+..++..+| .++...|++++|+.+|+++++..|.
T Consensus 117 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 117 EQKR-YEEAYQRLLEASQDTLYPERSRVFENLG----------------------LVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp HTTC-HHHHHHHHHHHTTCTTCTTHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHhH-HHHHHHHHHHHHhCccCcccHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 9875 9999999999999 8888999999999 8888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+..++..+|.++...|+ +++|+..|+++++..|.+..++..++.++...|++++|.+++++++++.|.......
T Consensus 174 ~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 174 QPSVALEMADLLYKERE-YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999999 999999999999999999999999999999999999999999999999998776543
No 25
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=2.9e-23 Score=215.38 Aligned_cols=252 Identities=12% Similarity=0.078 Sum_probs=232.4
Q ss_pred CChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+++..++...+.. + .+...|..++.++...|++++|+.+|+++++.+|++..++..++.++...|++++|+..+++++
T Consensus 289 ~~A~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 289 RRAEDYLSSINGL-E-KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHTSTTG-G-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-C-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3566667766665 3 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013800 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------- 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------- 330 (436)
+..|.+..++..+|.++...++ +++|+.+|+++++++|.+..+|..++.++...|++++|...+++++..
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNK-ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred hhCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 9999999999999999999975 999999999999999999999999999999999999999999987765
Q ss_pred ---hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHH
Q 013800 331 ---LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA------SPAD-SHVLAAYAC 400 (436)
Q Consensus 331 ---~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~------~p~~-~~~~~~la~ 400 (436)
.++...|++++|+.+|+++++..|.++.+|..+|.++...|+ +++|+..|+++++. +|++ ..++..++.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999 99999999999998 6664 789999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 401 FLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
++...|++++|++.|++++++.|....... .+++|
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999999998766544 55544
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=6.5e-23 Score=184.60 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=199.5
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.+..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++..+|.+..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013800 277 WEL-HRDQHRALTYFERAAL--AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 277 ~~~-~~d~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
... ++ +++|+.+|+++++ ..|.+..++..+| .++...|++++|+.+|+++++..
T Consensus 87 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 87 CGRLNR-PAESMAYFDKALADPTYPTPYIANLNKG----------------------ICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp HTTTCC-HHHHHHHHHHHHTSTTCSCHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCc-HHHHHHHHHHHHcCcCCcchHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhC
Confidence 988 75 9999999999999 6677789999999 88899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
|.++.++..+|.++...|+ +++|+..+++++...| .+..++..++.++...|+.++|..+++.+....|+......
T Consensus 144 ~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 144 PQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999 9999999999999999 99999999999999999999999999999999999877654
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=4.3e-24 Score=198.96 Aligned_cols=230 Identities=11% Similarity=0.072 Sum_probs=180.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAK 274 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 274 (436)
..+...|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++ .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777 3332 344777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGA 342 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A 342 (436)
++...++ +++|+.+|+++++++|.+..++..+|.++...|++++|+..+++++.. ......+++++|
T Consensus 83 ~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQ-DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777664 777777777777777777777777777777777777777777654432 255566799999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHCCChHHHH
Q 013800 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHD--HDKALCYFERAVQAS---PA-----DSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d--~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~ 412 (436)
+.+|+++++++|++..++..+|.++..+|++ +++|+..|++++++. |+ ...++..+|.++...|++++|+
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999998752 567999999999886 54 2368899999999999999999
Q ss_pred HHHHHHHhhCCCChhHHh
Q 013800 413 KSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 413 ~~~~~al~l~p~~~~a~~ 430 (436)
++|+++++++|+...+..
T Consensus 242 ~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCccHHHHHH
Confidence 999999999999888765
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.8e-23 Score=212.39 Aligned_cols=246 Identities=15% Similarity=0.086 Sum_probs=217.9
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.++..|..++..++.+++ .+..+|..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+
T Consensus 39 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 477899999999999999 7899999999999999999999999999999999999999999999999999888877552
Q ss_pred --------------------------------------------------------------------------------
Q 013800 257 -------------------------------------------------------------------------------- 256 (436)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (436)
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence
Q ss_pred -----------------------------HHHHhCCCCHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 257 -----------------------------HATMADPGDGE-------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 257 -----------------------------~al~~~p~~~~-------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
++++.+|+++. ++..+|.++...+ ++++|+.+|+++++.+|+
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~~~- 275 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-NLLDAQVLLQESINLHPT- 275 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCC-
Confidence 33344666644 4666777777766 499999999999999999
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW 368 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 368 (436)
..++..+|.++...|++++|...+.+++.. .++...|++++|+..|+++++.+|.++.++..+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999988776 78889999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
..|+ +++|+..|+++++..|++..++..+|.++...|++++|+..|++++.+.|...
T Consensus 356 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 356 KQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 9999 99999999999999999999999999999999999999999999999876543
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.9e-23 Score=211.26 Aligned_cols=248 Identities=13% Similarity=0.103 Sum_probs=224.8
Q ss_pred CCChHHHHHhhcCCCCCCCh-------hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 013800 179 PVSPPMYLAMGLGISVPGFD-------DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRA 251 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 251 (436)
...+..++..++...+ .+. .++..+|.++...|++++|+.+|++++..+|+ ..++..+|.++...|++++|
T Consensus 218 ~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 218 LTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 4467778888888888 443 46888899999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV- 330 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 330 (436)
+.+|+++++.+|.++.++..+|.++...++ +++|+.+|+++++.+|++..++..+|.++...|++++|...+.+++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQD-YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999875 999999999999999999999999999999999999999999988876
Q ss_pred -----------hHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh----------cCCHHHHHHHHHH
Q 013800 331 -----------LPIQSKGDLEGAEEYFSRAILANPGDGE------IMSQYAKLVWEL----------HHDHDKALCYFER 383 (436)
Q Consensus 331 -----------~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~d~~~A~~~~~~ 383 (436)
.++...|++++|+.+|+++++..|.+.. .+..+|.++... |+ +++|+..|++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~A~~~~~~ 453 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK-FNAAIKLLTK 453 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH-HHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH-HHHHHHHHHH
Confidence 8889999999999999999999876543 356778899998 99 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+++.+|++..++..+|.++..+|++++|++.|++++++.|.......
T Consensus 454 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999877654
No 30
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=1.1e-23 Score=214.16 Aligned_cols=210 Identities=15% Similarity=0.004 Sum_probs=195.8
Q ss_pred hHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 182 PPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDS-AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+...+.......+ ..+..|..+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.+|...|++++|+.+|+++++
T Consensus 87 al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 87 TLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555666666 6888999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 261 ADPGDGESWMQYAKLVWEL---------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~---------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
++|+ ..++..+|.++... ++ +++|+.+|+++++++|++..+|..+| .
T Consensus 166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------~ 221 (474)
T 4abn_A 166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVLDGRSWYILG----------------------N 221 (474)
T ss_dssp TCCC-HHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------H
T ss_pred hCCC-HHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------H
Confidence 9999 79999999999888 75 99999999999999999999999999 6
Q ss_pred HHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 332 PIQSK--------GDLEGAEEYFSRAILANP---GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 332 ~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
++... |++++|+.+|+++++++| .++.+|+++|.++..+|+ +++|+..|+++++++|++..++..++.
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES-YGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666 889999999999999999 999999999999999999 999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHH
Q 013800 401 FLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~ 417 (436)
++..+|++++|++.+.+
T Consensus 301 ~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 301 LLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999986643
No 31
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=7.2e-23 Score=186.42 Aligned_cols=210 Identities=12% Similarity=0.092 Sum_probs=179.8
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
++..|..+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 457889999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ +++|+.+|+++++++|++...+..++.++...| .++...|++++|+..|+++++++|+
T Consensus 86 ~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---------------~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 86 YRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEG---------------QKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh---------------HHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999975 999999999999999999966555555555555 8999999999999999999999999
Q ss_pred --CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 356 --DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 356 --~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++.+++++|.++...|+ ..++++..+.+.+...+ .+......+.+++|+.+|++++++.|+......
T Consensus 150 ~~~~~~~~~l~~~~~~~~~------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 218 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNGA------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 99999999999988776 34556666666654433 233344556678888888888888888776554
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=2.2e-23 Score=220.96 Aligned_cols=171 Identities=18% Similarity=0.233 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
.|++++++.++|.++..+|++++|+++|+++++++|+++.++.++|.+|..+++ +++|+.+|+++++++|++..+++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~-~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455566666666666666666666666666666666666666666666666653 6666666666666666666666666
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
| .++..+|++++|+++|+++++++|+++.+++++|.++..+|+ +++|+..|++++++
T Consensus 84 g----------------------~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 84 G----------------------NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKL 140 (723)
T ss_dssp H----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred H----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 6 555566666666666666666666666666666666666666 66666666666666
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+|++..++.++|.++..+|++++|++.+++++++.
T Consensus 141 ~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 141 KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 66666666666666666666666666666666553
No 33
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-23 Score=212.59 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=229.5
Q ss_pred CCChHHHHHhhcC-----C--CCC------CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 179 PVSPPMYLAMGLG-----I--SVP------GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK 245 (436)
Q Consensus 179 p~~a~~~~~~~~~-----~--~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 245 (436)
+..+..++..++. + .+. .....|..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++...
T Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHC
Confidence 3456666777666 4 221 23578899999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
|++++|+..|++++..+|.++.++..+|.++...++ +++|+.+|+++++..|.+..++..+|.++...|++++|...+.
T Consensus 284 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC-TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999875 9999999999999999999999999999999999999999999
Q ss_pred HHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---hcCCHHHHHHHHHHH
Q 013800 326 EHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE------IMSQYAKLVWE---LHHDHDKALCYFERA 384 (436)
Q Consensus 326 ~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~d~~~A~~~~~~a 384 (436)
+.+.. .++...|++++|+.+|++++...|.+.. ++..+|.++.. .|+ +++|+..|+++
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEKA 441 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHH
Confidence 88876 7888999999999999999999998855 99999999999 999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 385 VQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+..+|++..++..+|.++...|++++|+..|++++++.|.......
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 9999999999999999999999999999999999999998776544
No 34
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=3.5e-23 Score=219.49 Aligned_cols=171 Identities=17% Similarity=0.193 Sum_probs=165.6
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
+++.++.++|.++.++|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+++|+++++++|+++.+|.++|.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+..+++ +++|+++|+++++++|++..++.++| .++..+|++++|+..|+++++++|+
T Consensus 87 l~~~g~-~~~A~~~~~kAl~l~P~~~~a~~~Lg----------------------~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 87 LKEMQD-VQGALQCYTRAIQINPAFADAHSNLA----------------------SIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999985 99999999999999999999999999 8899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
++.++.++|.++..+|+ +++|++.+++++++.|+
T Consensus 144 ~~~a~~~L~~~l~~~g~-~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCD-WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CHHHHHHHHHHHHHTTC-CTTHHHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhccc-HHHHHHHHHHHHHhChh
Confidence 99999999999999999 99999999999987654
No 35
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.1e-22 Score=202.14 Aligned_cols=248 Identities=13% Similarity=0.093 Sum_probs=174.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..|..++..++...+ +..+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 21 ~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp CHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55566677777776665 3666777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhCCCC------------------------------------------------------------------------
Q 013800 258 ATMADPGD------------------------------------------------------------------------ 265 (436)
Q Consensus 258 al~~~p~~------------------------------------------------------------------------ 265 (436)
++...|.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 77776522
Q ss_pred -------HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHccCchHHH
Q 013800 266 -------GESWMQYAKLVWE---LHRDQHRALTYFERAAL-----A--A-------PQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 266 -------~~~~~~la~~~~~---~~~d~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
..++..+|.+++. .+ ++++|+.+|+++++ + + |.+..++..+|.++...|++++|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPE-SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTT-HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4555556655544 33 47777777777777 4 3 334556677777777777777777
Q ss_pred HHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 322 KAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 322 ~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
..+++.+.. .++...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|+++++..|.
T Consensus 258 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 258 EDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-YDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC-TTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhChh
Confidence 777765543 566677777777777777777777777777777777777777 77777777777777777
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013800 391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 429 (436)
+..++..+|.++...|++++|+..+++++...|......
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHH
Confidence 777777777777777777777777777777777655443
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=3.9e-22 Score=182.07 Aligned_cols=204 Identities=14% Similarity=0.159 Sum_probs=186.9
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+..++..++...+ .....+..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++
T Consensus 38 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 38 DYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116 (243)
T ss_dssp ----CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45577777888888888 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
+++..|.++.++..+|.++...++ +++|+.+|+++++..|++..++..+| .++...|
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~ 173 (243)
T 2q7f_A 117 ALRAGMENGDLFYMLGTVLVKLEQ-PKLALPYLQRAVELNENDTEARFQFG----------------------MCLANEG 173 (243)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccHHHHHHHH----------------------HHHHHcC
Confidence 999999999999999999999875 99999999999999999999999999 8888999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|+++++++|++..++..++.+....+
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN-REKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999 999999999999999999999998887765544
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=3e-22 Score=190.33 Aligned_cols=205 Identities=9% Similarity=-0.016 Sum_probs=157.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.++..++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|++.|++ |.++.++..+|.++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 44555566666666666666666666654 466666666666666666666666666666 66666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
..+|+ +++|++.|+++++.+|++.......+.+ .++...|++++|+..|+++++.+|++
T Consensus 141 ~~~g~-~~~A~~~l~~~~~~~p~~~~~~l~~a~~--------------------~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 141 LKLDR-LDLARKELKKMQDQDEDATLTQLATAWV--------------------SLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH--------------------HHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred HHCCC-HHHHHHHHHHHHhhCcCcHHHHHHHHHH--------------------HHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 66654 6666666666666666654333322211 22334589999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHhhCCCChhHHh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED-DSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~l~p~~~~a~~ 430 (436)
+.+++++|.++..+|+ +++|+..|+++++++|+++.++.+++.++..+|+.++ +.+++++++++.|++.....
T Consensus 200 ~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGR-WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999 9999999999999999999999999999999999987 56899999999999887554
No 38
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=2.1e-22 Score=204.54 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=184.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF 290 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~ 290 (436)
+.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++++|+++.+|..+|.+++..++ +++|+.+|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD-VTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 4578899999999999999999999999999999999 999999999999999999999999999999985 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 291 ERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK---------GDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 291 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+++++++|+ ..++..+| .++... |++++|+.+|+++++++|+++.+|+
T Consensus 161 ~~al~~~p~-~~~~~~lg----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 217 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLS----------------------MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217 (474)
T ss_dssp HHHHTTCCC-HHHHHHHH----------------------HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhhCCC-HHHHHHHH----------------------HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999 79999999 666666 9999999999999999999999999
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 362 QYAKLVWEL--------HHDHDKALCYFERAVQASP---ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 362 ~la~~~~~~--------g~d~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++|.++..+ |+ +++|+..|+++++++| .++.++.++|.++..+|++++|++.|+++++++|++..+..
T Consensus 218 ~lg~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 296 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKI-SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhhccccch-HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999 99 9999999999999999 99999999999999999999999999999999999887544
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=4.8e-21 Score=179.23 Aligned_cols=219 Identities=12% Similarity=0.093 Sum_probs=199.5
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
+++.++..+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 4567888999999999999999999999998 7788999999999999 999999999999999985 8999999
Q ss_pred HHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCchHHHHHHHHHHHH----------hHH
Q 013800 272 YAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWE----MEDDGEDDKAQEEHIQV----------LPI 333 (436)
Q Consensus 272 la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~~~ 333 (436)
+|.++.. .+ ++++|+.+|+++++. +++.++..+|.++.. .+++++|...+++++.. .++
T Consensus 80 lg~~~~~g~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQ-NTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCccc-CHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999888 76 599999999999988 489999999999999 99999999999988765 667
Q ss_pred HH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 013800 334 QS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE- 404 (436)
Q Consensus 334 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 404 (436)
.. .+++++|+.+|+++++. .++.+++.+|.++.. .++ +++|+.+|+++++..| +.++..+|.++..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 77 89999999999999987 468999999999999 989 9999999999999876 7899999999999
Q ss_pred ---CCChHHHHHHHHHHHhhCCCCh
Q 013800 405 ---TEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 405 ---~g~~~~A~~~~~~al~l~p~~~ 426 (436)
.+++++|+++|++++++.|...
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987543
No 40
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=5.5e-22 Score=199.90 Aligned_cols=247 Identities=15% Similarity=0.064 Sum_probs=196.0
Q ss_pred CChHHHHHhhcCC---------CCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 013800 180 VSPPMYLAMGLGI---------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--------PCHPLLLRNYAQLL 242 (436)
Q Consensus 180 ~~a~~~~~~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~la~~~ 242 (436)
++|..++.+++.+ .+ ....+|.++|.++..+|++++|+.+|++++++. +..+.++..+|.++
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~-~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEI-RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR 146 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTT-TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence 3566666666544 22 455778899999999999999999999998863 45678888888877
Q ss_pred HHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 013800 243 QKK--GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEM---- 314 (436)
Q Consensus 243 ~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 314 (436)
... +++++|+++|+++++++|+++.++..++.+++..+ +++++|+..|+++++++|++..++..++..+...
T Consensus 147 ~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 226 (472)
T 4g1t_A 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226 (472)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---
T ss_pred HHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhh
Confidence 764 46899999999999999999999999888866543 3467899999999999999999888888766554
Q ss_pred cCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------------
Q 013800 315 EDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL------------ 370 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------ 370 (436)
+++++|...+++++.. .++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4667888888877665 7788899999999999999999999999998888887543
Q ss_pred -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013800 371 -------HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 371 -------g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
+. +++|+..|+++++++|.+..++..+|.++...|++++|+.+|++++.+.|.....
T Consensus 307 ~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 307 YGKRKLLEL-IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp -CHHHHHHH-HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHhh-HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 23 5678888888888888888888888888888888888888888888887765443
No 41
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.7e-21 Score=196.31 Aligned_cols=238 Identities=13% Similarity=0.102 Sum_probs=200.9
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE---------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------ 261 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 261 (436)
.+..|..+|.++..+|++++|+++|++++++ +|.....|.++|.+|..+|++++|+.+|++++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3467888999999999999999999999986 5777889999999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCchHHHHHHHHHHHH-----
Q 013800 262 --DPGDGESWMQYAKLVWELH-RDQHRALTYFERAALAAPQDSNILAAYACFLWE---MEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 262 --~p~~~~~~~~la~~~~~~~-~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~----- 330 (436)
.+..+.++..+|.++...+ ++|++|+.+|+++++++|+++.++..++.++.. .++.++|+..+++++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 3456889999998887765 359999999999999999999999999988554 56678888888887776
Q ss_pred -----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 331 -----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 331 -----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
.++...+++++|+.+|++++..+|.++.++.++|.++...|+ +++|+..|+++++.+|++..++..+|
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 122345788999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHC-------------------CChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 400 CFLWET-------------------EEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 400 ~~~~~~-------------------g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
.+|... +.+++|+..+++++.+.|.+..+.. .+.+|
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence 887643 3467899999999999998776554 44443
No 42
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=6.1e-22 Score=180.27 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=148.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
+.++..++.+|.++...|++++|+..|+++++++| .+..+++.+|.++...++ +++|+.+|+++++.+|++..++..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK-YKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhCcchHHHHHHH
Confidence 45779999999999999999999999999999999 899999999999999975 9999999999999999999999999
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCHHHHHHH
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-------EIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~d~~~A~~~ 380 (436)
| .++..+|++++|+..|+++++++|+++ .++..+|.++...|+ +++|+..
T Consensus 83 ~----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~ 139 (228)
T 4i17_A 83 S----------------------AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEEN 139 (228)
T ss_dssp H----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred H----------------------HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHH
Confidence 9 889999999999999999999999999 679999999999999 9999999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHCCCh
Q 013800 381 FERAVQASPA--DSHVLAAYACFLWETEED 408 (436)
Q Consensus 381 ~~~al~~~p~--~~~~~~~la~~~~~~g~~ 408 (436)
|+++++++|+ +..++..+|.++...|+.
T Consensus 140 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 140 YKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999887765
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=1.7e-22 Score=188.03 Aligned_cols=224 Identities=9% Similarity=-0.037 Sum_probs=170.3
Q ss_pred CCCChHHHHHhhcCCCCC---CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVP---GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 254 (436)
+++.+..++..++...+. ..+..|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 445667778877776431 34577888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013800 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 334 (436)
|+++++++|.++.++..+|.++...++ +++|+.+|+++++++|++......++ . ..
T Consensus 100 ~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~----------------------~-~~ 155 (275)
T 1xnf_A 100 FDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLY----------------------L-AE 155 (275)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------H-HH
T ss_pred HHHHHhcCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------H-HH
Confidence 888888888888888888888888764 88888888888888888876655544 2 23
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHH
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA----DSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~ 410 (436)
..|++++|+..+++++...|.+...+. ++.++...++ .++|+..+++++...|. +..++..+|.++..+|++++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSC-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcC-HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 457777777777777777777655544 5556666666 77777777777665553 25677777777777777777
Q ss_pred HHHHHHHHHhhCCCChh
Q 013800 411 DSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~ 427 (436)
|+..|++++.++|....
T Consensus 234 A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 234 ATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHHhCCchhHH
Confidence 77777777777775443
No 44
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.1e-21 Score=187.74 Aligned_cols=220 Identities=16% Similarity=0.128 Sum_probs=199.9
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhh-------hCCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMP-------NFDDS-------AEAEEYYKRMID-EYPCHPLLLRNYAQLLQKK 245 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~-------~~g~~-------~~A~~~~~~al~-~~P~~~~~~~~la~~~~~~ 245 (436)
.+...|.+++...+ ..+..|..+|.++. ..|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 34 ~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 44567888888888 78999999998876 45886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGE-SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
|++++|+..|++++++.|.++. +|..+|.++...++ +++|+..|+++++..|....++...+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a---------------- 175 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAA---------------- 175 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHHHHHHH----------------
Confidence 9999999999999999999987 99999999988886 99999999999999999988887666
Q ss_pred HHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHH
Q 013800 325 EEHIQVLPIQ-SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA---SPA-DSHVLAAYA 399 (436)
Q Consensus 325 ~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~---~p~-~~~~~~~la 399 (436)
.+.. ..|++++|+.+|+++++.+|+++.+|..++.++...|+ +++|+..|++++.. .|+ ...+|..++
T Consensus 176 ------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 176 ------LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp ------HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred ------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4432 37999999999999999999999999999999999999 99999999999995 553 788999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 400 CFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.++...|+.++|..++++++++.|+.
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999873
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-21 Score=179.55 Aligned_cols=201 Identities=13% Similarity=0.027 Sum_probs=189.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-------SNI 303 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-------~~~ 303 (436)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...++ +++|+.+|++++++.|++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE-YETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 46789999999999999999999999999999 999999999999999975 999999999999999877 799
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~ 379 (436)
+..+|.++...|++++|...+.+++.. .++...|++++|+..+++++..+|.++.++..+|.++...|+ +++|+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~ 160 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD-WPNAVK 160 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC-HHHHHH
Confidence 999999999999999999999999987 788899999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 380 YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 380 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
.|++++..+|.+..++..+|.++...|++++|+..+++++++.|....... .+.+
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876554 4443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=9.4e-22 Score=182.96 Aligned_cols=209 Identities=13% Similarity=-0.010 Sum_probs=181.7
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+++.+..++..++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 57 ~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 57 GLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp TCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 467788899999999998 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
++++++|.+......++.+ ...+ ++++|+..+++++...|.+...+. ++ .++...
T Consensus 136 ~a~~~~~~~~~~~~~~~~~-~~~~-~~~~A~~~~~~~~~~~~~~~~~~~-~~----------------------~~~~~~ 190 (275)
T 1xnf_A 136 AFYQDDPNDPFRSLWLYLA-EQKL-DEKQAKEVLKQHFEKSDKEQWGWN-IV----------------------EFYLGN 190 (275)
T ss_dssp HHHHHCTTCHHHHHHHHHH-HHHH-CHHHHHHHHHHHHHHSCCCSTHHH-HH----------------------HHHTTS
T ss_pred HHHHhCCCChHHHHHHHHH-HHhc-CHHHHHHHHHHHHhcCCcchHHHH-HH----------------------HHHHHh
Confidence 9999999999777766644 5555 599999999999999998866554 55 566678
Q ss_pred CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013800 337 GDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 412 (436)
++.++|+..+++++...|. ++.++..+|.++...|+ +++|+..|++++.++|.+.. .++.++..+|++++|+
T Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-LDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQ 266 (275)
T ss_dssp SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhH
Confidence 8889999999999877664 37899999999999999 99999999999999997643 3477888999999998
Q ss_pred HHH
Q 013800 413 KSS 415 (436)
Q Consensus 413 ~~~ 415 (436)
+.|
T Consensus 267 ~~~ 269 (275)
T 1xnf_A 267 DDL 269 (275)
T ss_dssp ---
T ss_pred HHH
Confidence 887
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=5.2e-22 Score=184.77 Aligned_cols=225 Identities=11% Similarity=0.020 Sum_probs=194.7
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAED 253 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~ 253 (436)
+++.+..++..++...+ ....+|..+|.++...|++++|+.+|+++++ .|.+ ..++..+|.++...|++++|+.
T Consensus 18 ~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp CHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 44577888999999888 6888999999999999999999999999999 4433 3568999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---
Q 013800 254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--- 330 (436)
Q Consensus 254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 330 (436)
+|+++++.+|.++.++..+|.++...++ +++|+.+|+++++++|.+..++..+|......+++++|...++++++.
T Consensus 96 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 96 QYQAAVDRDTTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999875 999999999999999999999999995555667999999999988876
Q ss_pred ---------hHHHHcCC---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 331 ---------LPIQSKGD---LEGAEEYFSRAILAN---PG-----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 331 ---------~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.++...|+ +++|+..|++++++. |+ ...++..+|.++...|+ +++|+.+|+++++++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD-KVKADAAWKNILALDPT 253 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcc
Confidence 66777788 899999999999986 44 23789999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCC
Q 013800 391 DSHVLAAYACFLWETE 406 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g 406 (436)
++.++..++.+....+
T Consensus 254 ~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 254 NKKAIDGLKMKLEHHH 269 (272)
T ss_dssp CHHHHHHHC-------
T ss_pred HHHHHHHhhhhhcccc
Confidence 9999999888765543
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=8.3e-22 Score=194.78 Aligned_cols=249 Identities=11% Similarity=0.051 Sum_probs=200.0
Q ss_pred cCCCChHHHHHhhcCCCCCCCh----hhhhhHhhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Q 013800 177 ERPVSPPMYLAMGLGISVPGFD----DAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKG 246 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g 246 (436)
.++..+..++..++.+.+ .+. ..|..+|.++...|++++|+.+|+++++. .|....++..+|.++...|
T Consensus 62 g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 466778888888888877 443 57888888888888999999988888887 4666678888888888889
Q ss_pred CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhC------
Q 013800 247 DLYRAEDYYNHATMA------DPGDGESWMQYAKLVWELHRD-----------------QHRALTYFERAALAA------ 297 (436)
Q Consensus 247 ~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~d-----------------~~~A~~~~~~al~~~------ 297 (436)
++++|+.+|++++.+ .+....++..+|.++...+ + +++|+.+|++++++.
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999998888887 4556778888888888876 6 888888888888764
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 013800 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD--- 356 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~--- 356 (436)
+....++..+|.++...|++++|...+++++.. .++...|++++|+.+|++++.+.+..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 234557788888888888888888888876654 67778889999999999888887643
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 357 ---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 357 ---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
..++..+|.++..+|+ +++|+.+|++++.+.+.. ..++..+|.++..+|++++|+.+|++++++.+....
T Consensus 300 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 6788888888888888 899999999888875432 357888888899999999999999998888766554
Q ss_pred H
Q 013800 428 A 428 (436)
Q Consensus 428 a 428 (436)
.
T Consensus 379 ~ 379 (411)
T 4a1s_A 379 X 379 (411)
T ss_dssp H
T ss_pred c
Confidence 3
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=3e-20 Score=170.91 Aligned_cols=196 Identities=14% Similarity=0.148 Sum_probs=184.7
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++
T Consensus 52 ~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 52 NTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE 130 (252)
T ss_dssp CTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55578888888888888 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 258 ATM--ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 258 al~--~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
++. ..|.+..++..+|.++...++ +++|+.+|+++++..|.+..++..++ .++..
T Consensus 131 ~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~ 187 (252)
T 2ho1_A 131 ASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNRNQPSVALEMA----------------------DLLYK 187 (252)
T ss_dssp HTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHH----------------------HHHHH
T ss_pred HHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcccHHHHHHHH----------------------HHHHH
Confidence 999 889999999999999999875 99999999999999999999999999 88899
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~l 398 (436)
.|++++|+.+|+++++..|.+..++..++.++...|+ +++|+.+++++++..|+++.++..+
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED-RDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999999999998776543
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=3.6e-21 Score=188.98 Aligned_cols=245 Identities=9% Similarity=0.047 Sum_probs=133.8
Q ss_pred CCCChHHHHHhhcCCCCCCC----hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 013800 178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~ 247 (436)
++..+..++..++.+.+ .+ ...|..+|.++...|++++|+.+|++++.. .|....++..+|.++...|+
T Consensus 24 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp CHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 44455555555555544 22 244555566666666666666666655554 22234455556666666666
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh-----
Q 013800 248 LYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRD--------------------QHRALTYFERAALA----- 296 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d--------------------~~~A~~~~~~al~~----- 296 (436)
+++|+.++++++.+.|.. ..++..+|.++...+ + +++|+.+|++++.+
T Consensus 103 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 181 (406)
T 3sf4_A 103 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG 181 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666665554332 335555555555554 4 55566666555554
Q ss_pred -CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013800 297 -APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD- 356 (436)
Q Consensus 297 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~- 356 (436)
.+....++..+|.++...|++++|...+++++.. .++...|++++|+.+|++++.+.+..
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 2223345555566666666666665555544433 44555566666666666665554433
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 357 -----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
..++..+|.++...|+ +++|+.+|++++++.+.. ..++..+|.++..+|++++|+.++++++++.+..
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4455566666666665 666666666665553332 3455556666666666666666666666554443
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=191.59 Aligned_cols=228 Identities=10% Similarity=0.001 Sum_probs=202.9
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGD 265 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 265 (436)
.....+...|.++...|++++|+.+|+++++..|++. .++..+|.++...|++++|+.++++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3456788899999999999999999999999999984 68899999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------chH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMED--------------------DGE 319 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 319 (436)
..++..+|.++...++ +++|+.+|++++++.|.. ..++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 7789999999999875 999999999999987653 5588999999999999 999
Q ss_pred HHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHH
Q 013800 320 DDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 320 A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~ 375 (436)
|...+.+++.. .++...|++++|+.+|++++++.+... .++.++|.++...|+ ++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-hH
Confidence 99999877653 788899999999999999999866543 389999999999999 99
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 376 KALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 376 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
+|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999987765 6788999999999999999999999999986554
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=1.1e-21 Score=193.82 Aligned_cols=226 Identities=12% Similarity=0.026 Sum_probs=203.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGE 267 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 267 (436)
...+..+|..+...|++++|+.+|+++++..|++. .++..+|.++...|++++|+.+|++++++ .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 35567788899999999999999999999999987 58999999999999999999999999998 566788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------chHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALA------APQDSNILAAYACFLWEMED-----------------DGEDDKAQ 324 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~ 324 (436)
++..+|.++...++ +++|+.+|++++++ .+....++..+|.++...|+ +++|...+
T Consensus 128 ~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGR-FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 99999999999975 99999999999998 56678899999999999999 99999999
Q ss_pred HHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHH
Q 013800 325 EEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 325 ~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~~A~~~ 380 (436)
.+++.. .++...|++++|+.+|++++++.+... .++..+|.++...|+ +++|+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~ 285 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHH
Confidence 877653 788899999999999999999876533 389999999999999 9999999
Q ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 381 FERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 381 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
|++++.+.+.. ..++..+|.++..+|++++|+.++++++.+.+..
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 99999987754 5788999999999999999999999999986543
No 53
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=9.4e-21 Score=176.28 Aligned_cols=209 Identities=13% Similarity=0.034 Sum_probs=170.5
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESW 269 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 269 (436)
..+..+..+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++..|++ +.++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 566788888999999999999999999999999999 8999999999999999999999999999998854 6789
Q ss_pred HHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 270 MQYAKLVWE--------LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 270 ~~la~~~~~--------~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
+.+|.+++. .++ +++|+..|+++++..|++..+...+..+....+....+. +....++...|++++
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~-----~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQ-----YEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHccCHHH
Confidence 999999998 775 999999999999999998766633322111110000000 000088899999999
Q ss_pred HHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHC
Q 013800 342 AEEYFSRAILANPG---DGEIMSQYAKLVWEL----------HHDHDKALCYFERAVQASPADS---HVLAAYACFLWET 405 (436)
Q Consensus 342 A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~ 405 (436)
|+..|+++++..|+ .+.+++.+|.++..+ |+ +++|+..|+++++..|+++ .+...++.++..+
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~ 245 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER-YRRAVELYERLLQIFPDSPLLRTAEELYTRARQRL 245 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999998 567999999999977 78 9999999999999999985 4556667777666
Q ss_pred CChHHH
Q 013800 406 EEDEDD 411 (436)
Q Consensus 406 g~~~~A 411 (436)
++++++
T Consensus 246 ~~~~~~ 251 (261)
T 3qky_A 246 TELEGD 251 (261)
T ss_dssp HHHHTC
T ss_pred HHhhhh
Confidence 665543
No 54
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.87 E-value=4.6e-21 Score=203.23 Aligned_cols=184 Identities=11% Similarity=-0.040 Sum_probs=169.3
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMI--------DEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE 267 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (436)
.++.++...+ ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 3444444444 67799999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
+|+.+|.++...++ +++|+..|+++++++|++..+++++| .++..+|++++ +..|+
T Consensus 469 a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~lg----------------------~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 469 LVWYRAVAELLTGD-YDSATKHFTEVLDTFPGELAPKLALA----------------------ATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCSHHHHHHH----------------------HHHHHHTCCCT-TCHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHcCChHH-HHHHH
Confidence 99999999999975 99999999999999999999999999 88889999999 99999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
++++++|+++.+|+++|.++..+|+ +++|+..|+++++++|++..++.++|.++...++
T Consensus 525 ~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 525 TVWSTNDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhCCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999 9999999999999999999999999999988766
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=2.7e-21 Score=183.93 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=196.7
Q ss_pred CCCChHHHHHhhcCCCCCCC----hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 013800 178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~ 247 (436)
+++++..++..++.+.+ .+ ...+..+|.++...|++++|+.++++++.. .|....++..+|.++...|+
T Consensus 20 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp CHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 44567777888887776 44 367888899999999999999999998876 34456788899999999999
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhC----
Q 013800 248 LYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRD--------------------QHRALTYFERAALAA---- 297 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d--------------------~~~A~~~~~~al~~~---- 297 (436)
+++|+.++++++++.+.. ..++..+|.++...+ + +++|+.++++++.+.
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998875543 447888888888876 6 889999999888762
Q ss_pred --CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013800 298 --PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD- 356 (436)
Q Consensus 298 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~- 356 (436)
+....++..+|.++...|++++|...+++++.. .++...|++++|+.++++++.+.+..
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 334567888999999999999999988876654 67788899999999999998886654
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 357 -----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
..++..+|.++...|+ +++|+.++++++.+.+.. ..++..+|.++..+|++++|..++++++.+.+..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 6788889999999999 999999999998875432 3578889999999999999999999999887654
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=3.9e-21 Score=182.74 Aligned_cols=225 Identities=9% Similarity=-0.000 Sum_probs=198.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGES 268 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 268 (436)
..+...|..+...|++++|+.+|+++++..|++. .++..+|.++...|++++|+.++++++.+ .+....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3567789999999999999999999999999984 68889999999999999999999999987 4455788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------chHHHH
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMED--------------------DGEDDK 322 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 322 (436)
+..+|.++...++ +++|+.++++++++.+.. ..++..+|.++...|+ +++|..
T Consensus 86 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999875 999999999999986643 4488999999999999 889988
Q ss_pred HHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHH
Q 013800 323 AQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 323 ~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~ 378 (436)
.+.+.+.. .++...|++++|+.++++++++.+.. ..++..+|.++...|+ +++|+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 88876543 77888999999999999999886542 3489999999999999 99999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 379 CYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 379 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.++++++.+.+.. ..++..+|.++..+|++++|+.++++++.+.+..
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 9999999887655 5788999999999999999999999999886543
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=6.7e-20 Score=164.74 Aligned_cols=180 Identities=15% Similarity=0.141 Sum_probs=169.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV-NDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChHHHHH
Confidence 4677889999999999999999999999999999999999999999999999875 999999999999999999999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAIL--ANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
+| .++... |++++|+.+|+++++ ..|.+..++..+|.++...|+ +++|+..|++
T Consensus 82 l~----------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 138 (225)
T 2vq2_A 82 YG----------------------WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKR 138 (225)
T ss_dssp HH----------------------HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HH----------------------HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 99 888999 999999999999999 677778999999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CChhHHh
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP-IRQGAVT 430 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~ 430 (436)
+++..|.+..++..+|.++...|++++|+..+++++.+.| .......
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (225)
T 2vq2_A 139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186 (225)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 9999999999999999999999999999999999999998 7665443
No 58
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.85 E-value=1.7e-21 Score=166.36 Aligned_cols=147 Identities=12% Similarity=0.065 Sum_probs=98.7
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
.+|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+++|+++++++|+++.+|..+|.++...++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~- 80 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN- 80 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-
Confidence 4666777777777777777777777777777777777777777777777777777777777777777777777666653
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY-FSRAILANPGDGEIMS 361 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~ 361 (436)
+++|+.+|+++++++|+++.+++.+| .++...|++++|... ++++++++|+++.++.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la----------------------~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIA----------------------ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 77777777777777777777776666 566666666555544 4666777777666666
Q ss_pred HHHHHHHHhcC
Q 013800 362 QYAKLVWELHH 372 (436)
Q Consensus 362 ~la~~~~~~g~ 372 (436)
.++.++...|+
T Consensus 139 l~~~ll~~~G~ 149 (150)
T 4ga2_A 139 LKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHhCc
Confidence 66666666554
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=8.1e-20 Score=158.72 Aligned_cols=173 Identities=16% Similarity=0.098 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+++++++..|.+..++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a--- 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA-VDRGTELLERSLADAPDNVKVATVLG--- 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHH---
Confidence 35667777777777788888887777777777777777777777777764 78888888888888777777777777
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.++...|++++|+.++++++..+|.++.++..+|.++...|+ +++|+..+++++...|.+
T Consensus 84 -------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 84 -------------------LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp -------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred -------------------HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCccc
Confidence 677777788888888888888888888888888888888877 888888888888888877
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013800 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
..++..+|.++...|++++|+.++++++++.|.....
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 7888888888888888888888888888777665543
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=178.87 Aligned_cols=205 Identities=16% Similarity=0.142 Sum_probs=180.6
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------ 261 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 261 (436)
....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44567888999999999999999999999995 5667789999999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 262 --DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 262 --~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
.|....++..+|.++...++ +++|+.+|++++++. |....++..+| .
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la----------------------~ 161 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA----------------------L 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------H
T ss_pred CCChHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH----------------------H
Confidence 35567899999999998875 999999999999984 45567778888 8
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------
Q 013800 332 PIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA---------------- 387 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~---------------- 387 (436)
++...|++++|+.+|++++++ .|....++..+|.++...|+ +++|+.+|+++++.
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 888899999999999999988 66677889999999999999 99999999999874
Q ss_pred ---------------------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 388 ---------------------------------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 388 ---------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
.|....++..+|.++..+|++++|+++|++++++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 4556688999999999999999999999999998764
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=1.8e-20 Score=168.87 Aligned_cols=177 Identities=10% Similarity=-0.003 Sum_probs=134.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRN----------------YAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...+...|..+...|++++|+.+|+++++.+|+++.+++. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567788888888888999999999888888888888888 888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CH
Q 013800 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DL 339 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~ 339 (436)
+|+++.++..+|.++...++ +++|+.+|+++++++|+++.+++.+| .++...| +.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg----------------------~~~~~~~~~~~ 140 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEADNLAANIFLG----------------------NYYYLTAEQEK 140 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHHHhHHHH
Confidence 88888888888888888874 88888888888888888888888888 5554444 34
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
..+...|++++...|. ..+++.+|.++...|+ +++|+..|+++++++|+ ..+...+..
T Consensus 141 ~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 141 KKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR-YEKARNSLQKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT-HHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 5566677766543322 3466777888888888 88888888888888886 333333443
No 62
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=6e-20 Score=170.80 Aligned_cols=182 Identities=16% Similarity=0.061 Sum_probs=165.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013800 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD- 300 (436)
Q Consensus 225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~- 300 (436)
....|.++..++.+|..++..|++++|+..|+++++..|.+ +.+++.+|.+++..++ +++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE-YLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHCCCCc
Confidence 45688999999999999999999999999999999999999 9999999999999985 999999999999998854
Q ss_pred --HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH----------
Q 013800 301 --SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS--------KGDLEGAEEYFSRAILANPGDGEIM---------- 360 (436)
Q Consensus 301 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~---------- 360 (436)
..+++.+| .++.. .|++++|+..|+++++.+|++..++
T Consensus 87 ~~~~a~~~lg----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 87 RVPQAEYERA----------------------MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp THHHHHHHHH----------------------HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHH----------------------HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 67888999 77777 9999999999999999999986665
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHC----------CChHHHHHHHHHHHh
Q 013800 361 -------SQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWET----------EEDEDDSKSSDQFQQ 420 (436)
Q Consensus 361 -------~~la~~~~~~g~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~ 420 (436)
+.+|.++...|+ +++|+..|+++++..|+ ...+++.+|.++..+ |++++|+..|+++++
T Consensus 145 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 145 AKLARKQYEAARLYERREL-YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 888999999999 99999999999999998 457999999999977 899999999999999
Q ss_pred hCCCChhHHh
Q 013800 421 VAPIRQGAVT 430 (436)
Q Consensus 421 l~p~~~~a~~ 430 (436)
..|+...+..
T Consensus 224 ~~p~~~~~~~ 233 (261)
T 3qky_A 224 IFPDSPLLRT 233 (261)
T ss_dssp HCTTCTHHHH
T ss_pred HCCCChHHHH
Confidence 9999875443
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=9.5e-20 Score=158.30 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=164.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
...+..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (436)
..++ +++|+.+|++++...|.+..++..+| .++...|++++|+.+++++++..|.++
T Consensus 88 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 88 QVQK-YDLAVPLLIKVAEANPINFNVRFRLG----------------------VALDNLGRFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp HHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhcC-HHHHHHHHHHHHhcCcHhHHHHHHHH----------------------HHHHHcCcHHHHHHHHHHHHhcCccch
Confidence 9975 99999999999999999999999999 888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.++..+|.++...|+ +++|+.+++++++..|++.
T Consensus 145 ~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 145 KVHRAIAFSYEQMGR-HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCch
Confidence 999999999999999 9999999999999988764
No 64
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=2.6e-20 Score=167.76 Aligned_cols=176 Identities=11% Similarity=0.045 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ----------------YAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~d~~~A~~~~~~al 294 (436)
.+..++..|..+...|++++|+..|+++++.+|+++.+|+. +|.++...++ +++|+.+|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN-YDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999 9999999875 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-C
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH-D 373 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-d 373 (436)
+++|+++.++..+| .++...|++++|+.+|+++++++|+++.+++++|.+++..|+ +
T Consensus 82 ~~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 82 QKAPNNVDCLEACA----------------------EMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 99999999999999 888999999999999999999999999999999999987764 1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 374 HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 374 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
...+...+++++...|. ..+++.+|.++..+|++++|+.+|++++++.|+......
T Consensus 140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45677788777643332 357788999999999999999999999999998655443
No 65
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=5.3e-19 Score=167.91 Aligned_cols=203 Identities=13% Similarity=0.022 Sum_probs=171.6
Q ss_pred CChHHHHHhhcC--CCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 180 VSPPMYLAMGLG--ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 180 ~~a~~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+...+...+. ..| +++..+..+|.++...|++++|+..|++ |++..++..+|.++..+|++++|+..|++
T Consensus 82 ~~A~~~l~~ll~~~~~P-~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDV-TNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCC-SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345555555443 356 7888999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013800 258 ATMADPGDGESWMQYAKLVWEL-HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~-~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
+++.+|++.......+.+.... .+++++|+.+|+++++..|+++.+++++| .++..+
T Consensus 156 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la----------------------~~~~~~ 213 (291)
T 3mkr_A 156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA----------------------ACHMAQ 213 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH----------------------HHHHHT
T ss_pred HHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHc
Confidence 9999999875544444322222 23599999999999999999999999999 889999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK-ALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
|++++|+..|+++++.+|+++.++.++|.++..+|+ +.+ +..+++++++++|+++.+.. ...+.+.++++..-|
T Consensus 214 g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-PPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999 665 67899999999999987654 344555566665544
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=1e-19 Score=173.96 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-------KGDL-------YRAEDYYNHATM-ADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 279 (436)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5885 999999999999 7999999999999998888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 280 HRDQHRALTYFERAALAAPQDSN-ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++ +++|+..|++++++.|.+.. +|..++ .++.+.|++++|+..|+++++..|....
T Consensus 113 ~~-~~~A~~~~~~al~~~p~~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 113 MK-YEKVHSIYNRLLAIEDIDPTLVYIQYM----------------------KFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp TC-HHHHHHHHHHHHTSSSSCTHHHHHHHH----------------------HHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred CC-HHHHHHHHHHHHhccccCccHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 74 99999999999999999987 899999 7778889999999999999999999988
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 359 IMSQYAKLVWE-LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 359 ~~~~la~~~~~-~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+|...+.+... .|+ +++|+..|+++++.+|+++.+|..++.++..+|++++|+.+|++++..
T Consensus 170 ~~~~~a~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 170 VYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHTSCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88877766554 578 999999999999999999999999999999999999999999999996
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=5.1e-21 Score=163.36 Aligned_cols=147 Identities=19% Similarity=0.177 Sum_probs=135.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 316 (436)
.||.++...|++++|++.+++++..+|+++..++.+|.+|+..++ |++|+.+|+++++++|+++.+|..+|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~-~~~A~~~~~~al~~~p~~~~a~~~lg-------- 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE-YDLAKKYICTYINVQERDPKAHRFLG-------- 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH--------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH--------
Confidence 478888999999999999999999999999999999999999975 99999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHH
Q 013800 317 DGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY-FERAVQASPADSHVL 395 (436)
Q Consensus 317 ~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~-~~~al~~~p~~~~~~ 395 (436)
.++...|++++|+.+|+++++++|+++.+++++|.++...|+ +++|... ++++++++|+++.++
T Consensus 73 --------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 73 --------------LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp --------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHSTTCHHHH
T ss_pred --------------HHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhCcCCHHHH
Confidence 889999999999999999999999999999999999999999 8776665 699999999999999
Q ss_pred HHHHHHHHHCCC
Q 013800 396 AAYACFLWETEE 407 (436)
Q Consensus 396 ~~la~~~~~~g~ 407 (436)
..++.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999999998886
No 68
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=6.2e-20 Score=174.22 Aligned_cols=203 Identities=13% Similarity=0.053 Sum_probs=167.6
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPC------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GES 268 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 268 (436)
+...|.++...|++++|+.+|++++++.+. .+.++.++|.+|..+|++++|+.+|++++++.+.. ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333467888899999999999999998532 25789999999999999999999999999987653 568
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 269 WMQYAKLVWEL-HRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 269 ~~~la~~~~~~-~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
+.++|.+|... ++ +++|+.+|++++++.|.. ..++.++| .++..+|++++
T Consensus 120 ~~~lg~~~~~~lg~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~ 176 (292)
T 1qqe_A 120 KFELGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCA----------------------DLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred HHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH----------------------HHHHHhCCHHH
Confidence 89999999885 75 999999999999998754 45677788 88999999999
Q ss_pred HHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HCCC
Q 013800 342 AEEYFSRAILANPGDGE-------IMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-----VLAAYACFLW--ETEE 407 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~ 407 (436)
|+.+|++++++.|++.. ++.++|.++..+|+ +++|+..|+++++++|.... .+..++..+. ..++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999987653 68899999999999 99999999999999998664 3445555554 4678
Q ss_pred hHHHHHHHHHHHhhCCCChh
Q 013800 408 DEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 408 ~~~A~~~~~~al~l~p~~~~ 427 (436)
+++|+..|++++.++|....
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHhccCCccHHHHHH
Confidence 99999999999888876543
No 69
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.82 E-value=8e-19 Score=167.03 Aligned_cols=223 Identities=12% Similarity=0.121 Sum_probs=196.5
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD--DSAEAEEYYKRMIDEYPCHPLLLRNYAQLL----QKK---GDLYRA 251 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~~~~~la~~~----~~~---g~~~~A 251 (436)
++......++.+.| .+..+|...+.++...+ ++++++.++.+++..+|++..+|..++.++ ... ++++++
T Consensus 51 ~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 56777888888888 78899999999998888 899999999999999999999999999888 666 788999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQH--RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 329 (436)
++++.++++.+|++..+|..++.++...+. ++ +++++++++++.+|.+..+|...+
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~N~sAW~~R~--------------------- 187 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLKNNSAWSHRF--------------------- 187 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTTCHHHHHHHH---------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCCCHHHHHHHH---------------------
Confidence 999999999999999999999988888775 77 899999999999999999999888
Q ss_pred HhHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Q 013800 330 VLPIQSKGD------LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PADSHVLAAYAC 400 (436)
Q Consensus 330 ~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---p~~~~~~~~la~ 400 (436)
.++...++ ++++++++.+++..+|.+..+|+.++.++...|+..++....+.+++.++ |.++.++..++.
T Consensus 188 -~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 -FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp -HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred -HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 55556665 89999999999999999999999999999999995555667888888776 889999999999
Q ss_pred HHHHCCChHHHHHHHHHHHh-hCCCChh
Q 013800 401 FLWETEEDEDDSKSSDQFQQ-VAPIRQG 427 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~-l~p~~~~ 427 (436)
++.+.|+.++|+++|+.+.+ .+|....
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKSKYNPIRSN 294 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHccCCHHHHHHHHHHHHhccChHHHH
Confidence 99999999999999999996 7887543
No 70
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=6.7e-20 Score=194.24 Aligned_cols=180 Identities=12% Similarity=-0.011 Sum_probs=168.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT--------MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
.+|+++.+++..+ ...|++++|++.|++++ +.+|++..+++.+|.++...++ +++|+..|+++++++|
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD-VAKATRKLDDLAERVG 464 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHhccCc
Confidence 4677877777766 78999999999999999 9999999999999999999985 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013800 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
++..+|+.+| .++...|++++|+..|+++++++|+++.+++++|.++..+|+ +++ +
T Consensus 465 ~~~~a~~~lg----------------------~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~ 520 (681)
T 2pzi_A 465 WRWRLVWYRA----------------------VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-H 520 (681)
T ss_dssp CCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-T
T ss_pred chHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-H
Confidence 9999999999 888999999999999999999999999999999999999999 999 9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
..|+++++++|++..+++++|.++..+|++++|++.|+++++++|++..+.. .+.+
T Consensus 521 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 521 KFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp CHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877665 4443
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=2e-19 Score=167.03 Aligned_cols=190 Identities=17% Similarity=0.178 Sum_probs=166.2
Q ss_pred hhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQY 272 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 272 (436)
...|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.+|++++++ .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3447888888888888874 2556789999999999999999999999999988 35567899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALA--------APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
|.++...++ +++|+.+|++++.+ +|....++..+| .++...|++++|+.
T Consensus 92 ~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 92 AVLYGKRGK-YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA----------------------LLCQNQGKAEEVEY 148 (283)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------HHHHTTTCHHHHHH
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH----------------------HHHHHcCCHHHHHH
Confidence 999998875 99999999999998 466678888899 88889999999999
Q ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------
Q 013800 345 YFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---------------------------- 388 (436)
Q Consensus 345 ~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---------------------------- 388 (436)
+|++++++ .|....++..+|.++..+|+ +++|+.+|++++++.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 99999998 67778899999999999999 999999999999862
Q ss_pred ---------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 389 ---------------------PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 389 ---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|....++..+|.++..+|++++|+.+|++++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3445788999999999999999999999999763
No 72
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.81 E-value=1.6e-17 Score=155.13 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=170.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
+|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+ ++++|+.+|+++++.+ ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC--CHHH
Confidence 578899999999999999999999999999999 8889999999999888 76 5999999999999985 8999
Q ss_pred HHHHHHHHHH----ccCchHHHHHHHHHHHH----------hHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 304 LAAYACFLWE----MEDDGEDDKAQEEHIQV----------LPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 304 ~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
++.+|.++.. .+++++|+..+++++.. .++.. .+++++|+.+|+++++.. ++.+++++|.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 9999999999 99999999999988765 77788 999999999999999976 6899999999
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCC
Q 013800 366 LVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 366 ~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p 423 (436)
++.. .++ +++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++..|
T Consensus 155 ~~~~~~~~~~~-~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 155 LYDAGRGTPKD-LKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 9998 888 999999999999874 57999999999999 9999999999999999866
No 73
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=3.5e-18 Score=155.60 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=141.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE---SWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 271 (436)
+..+..+|..++..|++++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34566777777777777777777777777776653 56777777777777777777777777777776643 5666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
+|.++...+.. ....+..++ ..+...|++++|+..|+++++
T Consensus 84 ~g~~~~~~~~~-----------------~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 84 RGLTNMALDDS-----------------ALQGFFGVD----------------------RSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp HHHHHHHHHC-----------------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhh-----------------hhhhhhccc----------------------hhhcCcHHHHHHHHHHHHHHH
Confidence 77666655421 011122333 556678999999999999999
Q ss_pred hCCCCHHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHH
Q 013800 352 ANPGDGEIM-----------------SQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 352 ~~p~~~~~~-----------------~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A 411 (436)
..|++..++ ..+|.++...|+ +++|+..|+++++..|+++ .++..+|.++.++|++++|
T Consensus 125 ~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 125 GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA-WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 999987554 578899999999 9999999999999999986 6899999999999999999
Q ss_pred HHHHHHHHhhCCCCh
Q 013800 412 SKSSDQFQQVAPIRQ 426 (436)
Q Consensus 412 ~~~~~~al~l~p~~~ 426 (436)
++.++++....|...
T Consensus 204 ~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 204 EKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHCCSCCC
T ss_pred HHHHHHHHhhCCCch
Confidence 999999999887743
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=3.4e-18 Score=155.68 Aligned_cols=193 Identities=9% Similarity=-0.017 Sum_probs=132.0
Q ss_pred cCCCChHHHHHhhcCCCCCCC--hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGF--DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL---LLRNYAQLLQKKGDLYRA 251 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---~~~~la~~~~~~g~~~~A 251 (436)
.+.+.|..++...+...+... ..++..+|.++...|++++|+..|+++++.+|++.. +++.+|.++...+..
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~--- 94 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS--- 94 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh---
Confidence 467788999999988777321 378999999999999999999999999999998864 789999999874421
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
....+..++.++...+ ++++|+..|+++++..|++..++..+..+....+...... .....
T Consensus 95 -------------~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~-----~~~a~ 155 (225)
T 2yhc_A 95 -------------ALQGFFGVDRSDRDPQ-QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE-----YSVAE 155 (225)
T ss_dssp --------------------------CCH-HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred -------------hhhhhhccchhhcCcH-HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 0111223333333333 2555555555555555555433322111110000000000 00007
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
++...|++++|+..|+++++..|+++ +++..+|.++..+|+ +++|+..++++....|++.
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~-~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM-NAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCCSCCC
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCch
Confidence 88899999999999999999999986 689999999999999 9999999999999888753
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=4.4e-18 Score=174.84 Aligned_cols=218 Identities=16% Similarity=0.114 Sum_probs=193.3
Q ss_pred HHHHHhhcCCCCCCChhhhhhHhhhhhh-------CCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCC
Q 013800 183 PMYLAMGLGISVPGFDDAGEVVDLIMPN-------FDDSA-------EAEEYYKRMID-EYPCHPLLLRNYAQLLQKKGD 247 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~P~~~~~~~~la~~~~~~g~ 247 (436)
...|.+++...+ ..+..|..+|.++.. .|+++ +|+..|+++++ ..|++..+|..+|.++...|+
T Consensus 258 ~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 457888888888 788999999998875 78887 89999999997 799999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013800 248 LYRAEDYYNHATMADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 326 (436)
+++|+..|++++++.|.++ .+|..++.++...++ +++|+.+|+++++..|.....+...+.
T Consensus 337 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a~----------------- 398 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAAL----------------- 398 (530)
T ss_dssp HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHHH-----------------
Confidence 9999999999999999985 689999998888876 999999999999998887777665552
Q ss_pred HHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Q 013800 327 HIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFL 402 (436)
Q Consensus 327 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~~~~~la~~~ 402 (436)
..+...|++++|..+|+++++.+|+++.+|..++.++...|+ +++|..+|++++...|.++ .+|..+..+.
T Consensus 399 ----~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~-~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 399 ----MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp ----HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred ----HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC-HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 223468999999999999999999999999999999999999 9999999999999877654 4888899999
Q ss_pred HHCCChHHHHHHHHHHHhhCCC
Q 013800 403 WETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 403 ~~~g~~~~A~~~~~~al~l~p~ 424 (436)
...|+.+.+..+++++++..|.
T Consensus 474 ~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHcCCHHHHHHHHHHHHHHCch
Confidence 9999999999999999999873
No 76
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=5.3e-19 Score=154.60 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|++++..+| ++..+..++.+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~~~~a~~~~p-~~~~~~~~~~~~--- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ-FELAQELLATIPLEYQ-DNSYKSLIAKLE--- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC-HHHHHHHHTTCCGGGC-CHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHhhhccC-ChHHHHHHHHHH---
Confidence 44444444445555555555555555555555555555544444432 5555555555554444 443333322110
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--H
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--S 392 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~--~ 392 (436)
+...+...+|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+. .
T Consensus 84 ------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~ 144 (176)
T 2r5s_A 84 ------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDG 144 (176)
T ss_dssp ------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTT
T ss_pred ------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChH
Confidence 0011122234555566666666666666666666666655 666666666666655543 3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 393 HVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
.++..++.++..+|+.++|+..|++++.
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 4555666666666666666666655553
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.80 E-value=2.7e-18 Score=162.55 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=137.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
-|++...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|++++..+|+....+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR-SEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC-HHHHHHHHHhCchhhcchHHHHHHH
Confidence 377778888888888888888888888888888888888888888888887764 8888888888888888655555555
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
+ ..+...++.++|+..|++++..+|+++.+++++|.++...|+ +++|+..|++++..
T Consensus 192 ~----------------------~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 192 Q----------------------IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR-NEEALELLFGHLRX 248 (287)
T ss_dssp H----------------------HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred H----------------------HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhc
Confidence 5 556667777888888888888888888888888888888888 88888888888888
Q ss_pred CCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 388 SPAD--SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 388 ~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
+|++ ..++..++.++..+|+.++|+..|++++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 8887 77888888888888888888888888775
No 78
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=5.1e-19 Score=154.73 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=149.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| ++..+..++.+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999 88877776655443
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-- 356 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-- 356 (436)
...+..+|+..|+++++++|+++.+++.+| .++...|++++|+..|+++++.+|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELA----------------------VQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 322245689999999999999999999999 89999999999999999999999875
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
+.++..+|.++..+|+ .++|+..|++++.
T Consensus 144 ~~a~~~l~~~~~~~g~-~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQ-GNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCcHHHHHHHHHH
Confidence 6699999999999999 9999999999875
No 79
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=1.8e-18 Score=142.94 Aligned_cols=117 Identities=19% Similarity=0.126 Sum_probs=59.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
++|+.+..+.++|..++..|+|++|+..|+++++++|.++.+|..+|.++..+++ +++|+..|+++++++|++..+|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4444455555555555555555555555555555555555555555555544442 555555555555555555555555
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
+| .++..+|++++|+..|+++++++|++.+++..++.+
T Consensus 87 lg----------------------~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KA----------------------ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HH----------------------HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 55 444444555555555555555555555554444443
No 80
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=6.8e-18 Score=174.96 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013800 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF 290 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~ 290 (436)
.|++++|+.+|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..++..+|.++...++ +++|+.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR-HAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999875 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 291 ERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 291 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
+++++++|++..++.++| .++...|++++|+..|+++++++|++..++.++|.++..+
T Consensus 81 ~~al~~~p~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLG----------------------HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999 8889999999999999999999999999999999999999
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 371 ---HHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 371 ---g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
|+ +++|+..|+++++.+|.+...+..++
T Consensus 139 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 139 CDWRA-LDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp TCCTT-HHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred hcccc-HHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99 99999999999999999887777766
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=1.8e-18 Score=164.02 Aligned_cols=178 Identities=13% Similarity=0.057 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHH
Q 013800 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG------DGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~d~~~A 286 (436)
++++|+.+|+++ |.+|...|++++|+.+|.+++++.+. ...++.++|.++...++ +++|
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-SVNA 96 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC-HHHH
Confidence 599999999988 66788999999999999999998532 26789999999999875 9999
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHHhCCCC---
Q 013800 287 LTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAILANPGD--- 356 (436)
Q Consensus 287 ~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~--- 356 (436)
+.+|++++++.|.. ..++.++| .+|... |++++|+.+|++++++.|.+
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg----------------------~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELG----------------------EILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------HHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 99999999998653 45677777 888886 99999999999999998754
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 357 ---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-------VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 357 ---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
..++.++|.++..+|+ +++|+.+|++++++.|++.. ++.++|.++..+|++++|+.+|++++.+.|.+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 5689999999999999 99999999999999988653 678999999999999999999999999999887
Q ss_pred hH
Q 013800 427 GA 428 (436)
Q Consensus 427 ~a 428 (436)
..
T Consensus 234 ~~ 235 (292)
T 1qqe_A 234 DS 235 (292)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 82
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=1.1e-18 Score=171.49 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=160.4
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDE---YPC---HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-------DGE 267 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 267 (436)
+...|.++...|++++|+.+|+++++. .++ .+.++..+|.++...|++++|+.++++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344788888888888888888888876 222 4477888888888888888888888888887433 245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQV----------- 330 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------- 330 (436)
++..+|.++...++ +++|+.+|++++++.+.. ..++.++|.++...|++++|...+++++..
T Consensus 186 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 186 CHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 77888888888874 888888888888875432 246778887777777777777777666552
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCCCHHHH
Q 013800 331 -------LPIQSKGDLEGAEEYFSRAILAN-----PGDGEIMSQYAKLVWELHHDH---DKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~d~---~~A~~~~~~al~~~p~~~~~~ 395 (436)
.++..+|++++|+.++++++++. |.....+..+|.++...|+ + .+|+..+++. ...|....++
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD-EEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 67777888888888888887763 3333345667777776665 3 3344444433 1122334678
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
..+|.++..+|++++|..+|++++++....
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999886443
No 83
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=3.5e-18 Score=141.25 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=109.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
++..++|+.+..+..+|..++..|+ |++|+.+|+++++++|.++.+|.++| .++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~----------------------~~~~~~ 60 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPENAILYSNRA----------------------ACLTKL 60 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHT
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHh----------------------hHHHhh
Confidence 3445788889999999999998875 99999999999999999999999999 888889
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
|++++|+..|+++++++|+++.+|+++|.++..+|+ +++|+..|+++++++|++..++..++.++
T Consensus 61 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-WSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999999999999998888764
No 84
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.77 E-value=1.7e-16 Score=151.91 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=197.9
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--H
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD----------SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD--L 248 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~ 248 (436)
++..+....+.+.| .+..+|...+.++...+. +++++.++..++..+|++..+|...+.++...++ +
T Consensus 48 eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 57788999999999 899999999998887765 6899999999999999999999999999999994 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
+++++++.++++.+|.+..+|...+.++...+..++++++++.++++.+|.+..+|..++.++........+..
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~------ 200 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP------ 200 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc------
Confidence 99999999999999999999999999988887536999999999999999999999999966544321100000
Q ss_pred HHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----------HHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 329 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
..-...+.++++++++.+++..+|+|..+|+.+..++... +. ++++++.+.+++++.|++...+..
T Consensus 201 --~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~-l~~el~~~~elle~~pd~~w~l~~ 277 (331)
T 3dss_A 201 --QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV-LQSELESCKELQELEPENKWCLLT 277 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHH-HHHHHHHHHHHHhhCcccchHHHH
Confidence 0000015689999999999999999999998777777655 45 899999999999999999766555
Q ss_pred HHHHHH---HCCChHHHHHHHHHHHhhCCCChhH
Q 013800 398 YACFLW---ETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 398 la~~~~---~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
++.+.. ..|..++....+.+..+++|.-.+-
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 554432 3577889999999999999986654
No 85
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=1.1e-17 Score=158.39 Aligned_cols=167 Identities=11% Similarity=0.064 Sum_probs=156.0
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.....+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999999999777666677766
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ .++|+..|+++++.+|++..+++.+| .++...|++++|+..|+++++.+|+
T Consensus 195 l~~~~~-~~~a~~~l~~al~~~P~~~~~~~~la----------------------~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 195 LLXQAA-DTPEIQQLQQQVAENPEDAALATQLA----------------------LQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHT-SCHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhcc-cCccHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhcccc
Confidence 777765 89999999999999999999999999 8899999999999999999999999
Q ss_pred C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 356 D--GEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 356 ~--~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
+ ..++.+++.++..+|+ .++|...|++++.
T Consensus 252 ~~~~~a~~~l~~~~~~~g~-~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGT-GDALASXYRRQLY 283 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCC-CCcHHHHHHHHHH
Confidence 8 8999999999999999 9999999999875
No 86
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=2.1e-16 Score=160.74 Aligned_cols=229 Identities=10% Similarity=0.075 Sum_probs=168.7
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPN----FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAE 252 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~ 252 (436)
.+..++.++... ++..++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+
T Consensus 169 ~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 169 MAREWYSKAAEQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 344444444332 345666777777766 67777777777777664 356677777777775 67777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCchHHHHH
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM-----EDDGEDDKA 323 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~ 323 (436)
.+|+++++. .++.+++.+|.++.. .+ ++++|+.+|+++++. .++.+++.+|.++... +++++|..+
T Consensus 244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~-d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAK-EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSC-CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 777777654 456777777777665 43 588888888887654 5677888888888777 778888888
Q ss_pred HHHHHHH----------hHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHH
Q 013800 324 QEEHIQV----------LPIQSKG---DLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQ 386 (436)
Q Consensus 324 ~~~~~~~----------~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~ 386 (436)
++++.+. .++...| ++++|+.+|+++++. .++.+++++|.++.. .++ +++|+.+|+++++
T Consensus 319 ~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 319 YTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD-EQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHh
Confidence 8776654 5555545 788888888888876 568888899988888 677 8999999999887
Q ss_pred hCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCC
Q 013800 387 ASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 387 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~ 424 (436)
.. ++.++.++|.+|.. .+++++|+..|+++++..|+
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 54 57888899999888 88999999999999988754
No 87
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.76 E-value=2.6e-17 Score=170.52 Aligned_cols=160 Identities=14% Similarity=0.033 Sum_probs=136.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013800 245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
.|++++|+..|+++++.+|++..++..+|.++...++ +++|+.+|+++++++|++..++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg---------------- 64 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD-TTAGEMAVQRGLALHPGHPEAVARLG---------------- 64 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHTTSTTCHHHHHHHH----------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------
Confidence 4789999999999999999999999999999999975 99999999999999999999999999
Q ss_pred HHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 325 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.++..+|++++|+.+|+++++++|++..+++++|.++..+|+ +++|+..|+++++++|++..++..++.++..
T Consensus 65 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 65 ------RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred C---CChHHHHHHHHHHHhhCCCChhH
Q 013800 405 T---EEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 405 ~---g~~~~A~~~~~~al~l~p~~~~a 428 (436)
+ |++++|++.|+++++.+|....+
T Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 138 LCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred hhccccHHHHHHHHHHHHhcCCcccCh
Confidence 9 99999999999999999986543
No 88
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.76 E-value=8.1e-20 Score=177.16 Aligned_cols=152 Identities=9% Similarity=0.060 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---------------SNILAAYACF 310 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 310 (436)
+++++|+..|++++...|.++.++..+|.+++..++ +++|+.+|+++++++|++ ..++.++|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla-- 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA-- 203 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH--
Confidence 344444545555555555555555555555555443 555555555555555554 67888999
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.++..+|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+..|+++++++|+
T Consensus 204 --------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 204 --------------------MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPN 262 (336)
T ss_dssp --------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSS
T ss_pred --------------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCC
Confidence 889999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhh
Q 013800 391 DSHVLAAYACFLWETEEDEDD-SKSSDQFQQV 421 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l 421 (436)
+..++..++.++..+|++++| ...|++++..
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 5567776653
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.75 E-value=5e-17 Score=158.75 Aligned_cols=244 Identities=14% Similarity=0.072 Sum_probs=201.7
Q ss_pred CCCChHHHHHhhcCCCCCCCh----hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCC
Q 013800 178 RPVSPPMYLAMGLGISVPGFD----DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~ 247 (436)
+++.+..++..++...+.+.. .++..+|.++...|++++|+..+++++...|... .++..+|.++...|+
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 444667777777776653332 3678899999999999999999999998765432 447889999999999
Q ss_pred HHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 013800 248 LYRAEDYYNHATMAD--------PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLWEM 314 (436)
Q Consensus 248 ~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 314 (436)
+++|+.++++++++. |....++..+|.+++..|+ +++|+.++++++.+.+. ...++..++.++...
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 999999999999874 3345678889999998875 99999999999999875 346788999999999
Q ss_pred cCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhc
Q 013800 315 EDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQYAKLVWELH 371 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g 371 (436)
|++++|...+++.+.. .++...|++++|..++++++...+.. ...+..++.++...|
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 267 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999876543 23668999999999999998877653 346788999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 372 HDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+ +++|+..+++++...+.. ..++..++.++...|++++|...+++++.+.+
T Consensus 268 ~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 268 E-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 9 999999999998875431 25788899999999999999999999998753
No 90
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=8.5e-17 Score=165.24 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-------KGDLY-------RAEDYYNHATM-ADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 279 (436)
.+++..|++++..+|.++.+|+.+|.++.. .|+++ +|+..|+++++ +.|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 8999999999999998888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 280 HRDQHRALTYFERAALAAPQDS-NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++ +++|..+|++++++.|.++ .+|..++ .++.+.|++++|...|+++++..|....
T Consensus 335 g~-~~~A~~~~~~al~~~p~~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 335 MK-YEKVHSIYNRLLAIEDIDPTLVYIQYM----------------------KFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp TC-HHHHHHHHHHHHHSSSSCHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred CC-HHHHHHHHHHHhCccccCchHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 75 9999999999999999985 6899999 7777789999999999999999998888
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 359 IMSQYAKLV-WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 359 ~~~~la~~~-~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
.+...+.+. ...|+ +++|...|+++++..|+++.+|..++.++...|+.++|..+|++++...|...
T Consensus 392 ~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 392 VYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHHHHHHHHHHHcCC-hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 887777664 35788 99999999999999999999999999999999999999999999999876543
No 91
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=9.3e-16 Score=155.90 Aligned_cols=212 Identities=11% Similarity=0.136 Sum_probs=107.9
Q ss_pred hhhhhhHhhhhhh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 198 DDAGEVVDLIMPN----FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESW 269 (436)
Q Consensus 198 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 269 (436)
+.++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 3444445554444 44555555555554443 244455555555544 44555555555555443 344555
Q ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCchHHHHHHHHHHHH----------h
Q 013800 270 MQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWE----MEDDGEDDKAQEEHIQV----------L 331 (436)
Q Consensus 270 ~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~ 331 (436)
+.+|.+|.. .+ ++++|+.+|+++++. .++.+++.+|.++.. .+++++|..++++.... .
T Consensus 187 ~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVER-NDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCc-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555544443 22 355555555555443 244455555555544 44555555555443332 3
Q ss_pred HHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 332 PIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----HHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 332 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
++.. .+++++|+.+|+++++. .++.+++.+|.++... ++ +++|+.+|+++++. .++.++..+|.++
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~y 338 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN-REQAISWYTKSAEQ--GDATAQANLGAIY 338 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 3334 45555566655555443 3455555666555554 44 66666666665554 2345556666666
Q ss_pred HHCC---ChHHHHHHHHHHHhh
Q 013800 403 WETE---EDEDDSKSSDQFQQV 421 (436)
Q Consensus 403 ~~~g---~~~~A~~~~~~al~l 421 (436)
...| ++++|+++|+++.+.
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT
T ss_pred HhCCCcccHHHHHHHHHHHHHC
Confidence 5544 555666666666554
No 92
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.74 E-value=3e-16 Score=150.27 Aligned_cols=194 Identities=13% Similarity=0.091 Sum_probs=176.0
Q ss_pred hCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 210 NFDDS-AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD----------LYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 210 ~~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
+.|++ ++|+.++.+++..+|++..+|...+.++...+. +++++.++.+++..+|++..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 33555 489999999999999999999999999988776 7899999999999999999999999999988
Q ss_pred HcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 013800 279 LHR-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD-LEGAEEYFSRAILANPGD 356 (436)
Q Consensus 279 ~~~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~ 356 (436)
.+. ++++++.++.++++.+|.+..+|...+ .+....|. ++++++++.++++.+|.|
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~----------------------~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRR----------------------FVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 874 489999999999999999999999999 77777787 699999999999999999
Q ss_pred HHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----------CChHHH
Q 013800 357 GEIMSQYAKLVWEL--------------HHDHDKALCYFERAVQASPADSHVLAAYACFLWET-----------EEDEDD 411 (436)
Q Consensus 357 ~~~~~~la~~~~~~--------------g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A 411 (436)
..+|.+++.++... +. ++++++++.+++..+|++..+|..+..++... +..+++
T Consensus 179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~-~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp HHHHHHHHHHHHHHSCCC------CCCHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 99999999999988 55 89999999999999999999998777776665 457899
Q ss_pred HHHHHHHHhhCCCCh
Q 013800 412 SKSSDQFQQVAPIRQ 426 (436)
Q Consensus 412 ~~~~~~al~l~p~~~ 426 (436)
++.+++++++.|+..
T Consensus 258 l~~~~elle~~pd~~ 272 (331)
T 3dss_A 258 LESCKELQELEPENK 272 (331)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhhCcccc
Confidence 999999999999873
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.74 E-value=2.9e-16 Score=149.39 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=171.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc--CCH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG--DLYRAEDYYNHATMADPGDGESWMQYAKLV----WELH--RDQ 283 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~~--~d~ 283 (436)
...++|+.++.++|.++|++..+|...+.++...+ +++++++++.+++..+|++..+|+.++.++ ...+ +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34479999999999999999999999999999999 999999999999999999999999999998 5552 469
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHH
Q 013800 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE--GAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~ 361 (436)
++++.+++++++.+|.+..+|...+ .++...|.++ ++++++.++++.+|.+..+|.
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~----------------------~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~ 184 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRK----------------------WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999 7777888888 999999999999999999999
Q ss_pred HHHHHHHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHhhC
Q 013800 362 QYAKLVWELHHD-----HDKALCYFERAVQASPADSHVLAAYACFLWETEEDED-DSKSSDQFQQVA 422 (436)
Q Consensus 362 ~la~~~~~~g~d-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~l~ 422 (436)
+++.++...++. ++++++++.+++..+|.+..+|..++.++...|+..+ ...+..+++.+.
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 999999887642 7899999999999999999999999999999999666 445666666664
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.74 E-value=1.9e-17 Score=153.61 Aligned_cols=209 Identities=14% Similarity=0.116 Sum_probs=158.9
Q ss_pred CCCChHHHHHhhcCC-------CCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGI-------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--------PCHPLLLRNYAQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~la~~~ 242 (436)
++..|..++..++.+ +......++..+|.++...|++++|+.+|+++++.. |....++..+|.++
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 555666666666653 222456789999999999999999999999999873 55668899999999
Q ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA--------APQDSNILAA 306 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~ 306 (436)
...|++++|+.+|++++.+ +|....++..+|.++...++ +++|+.+|++++++ .|....++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998 46678899999999999875 99999999999999 6777888999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHH--------------h-------HHHH------cCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQV--------------L-------PIQS------KGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~--------------~-------~~~~------~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|.++...|++++|...+++++.. . .+.. ...+.++...++......|....+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 997777766666666666665543 0 0001 111223333333322234566788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
+..+|.++..+|+ +++|+.+|++++++.
T Consensus 255 ~~~la~~~~~~g~-~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 255 LRSLGALYRRQGK-LEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhh
Confidence 9999999999999 999999999998753
No 95
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=3.6e-17 Score=160.51 Aligned_cols=221 Identities=14% Similarity=-0.001 Sum_probs=160.5
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYP------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-------DG 266 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 266 (436)
.+...|..+...|++++|+.+|++++...+ ..+.++..+|.++...|++++|+.++++++++.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999998632 24578999999999999999999999999987543 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
.++..+|.++...++ +++|+.+|++++++.+. ...++.++|.++...|++++|...+.+++..
T Consensus 183 ~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 578899999999875 99999999999987432 3457788997777777777777666666552
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 331 -------LPIQSKGDLEGAEEYFSRAILANP-----GDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p~~~~~~~ 396 (436)
.++..+|++++|+.++++++++.+ .....+..++.++...++ .+.+|+..+++. ...|....++.
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 340 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHH
Confidence 566666777777777777776632 223334444444444333 033333333331 11122235677
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 397 AYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 397 ~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
.+|.++...|++++|+.+|++++++.
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999998764
No 96
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=162.36 Aligned_cols=211 Identities=14% Similarity=0.114 Sum_probs=167.2
Q ss_pred CCCChHHHHHhhcCC-------CCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGI-------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~ 242 (436)
+++.+..++..++.+ .......++..+|.++...|++++|+.+|++++.. .|....++..+|.++
T Consensus 42 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (311)
T 3nf1_A 42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 344666677777664 22245678999999999999999999999999987 355568899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMAD--------PGDGESWMQYAKLVWELHRDQHRALTYFERAALA--------APQDSNILAA 306 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~ 306 (436)
...|++++|+.+|++++++. |....++..+|.++...++ +++|+.+|++++++ .|....++..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999884 5567889999999998875 99999999999998 6777888999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHH---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQV---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|.++...|++++|...+++++.. ..+...+.+.+|+..+++++...|..+.+
T Consensus 201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT 280 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence 998888888888888888877653 22334455666677777777788888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
+..+|.++...|+ +++|+.+|++++++.|.
T Consensus 281 ~~~la~~~~~~g~-~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 281 LKNLGALYRRQGK-FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHhhc
Confidence 9999999999999 99999999999998875
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=8e-18 Score=143.67 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=61.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013800 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 334 (436)
+++++.++|+++.+++.+|.+++..++ +++|+.+|++++.++|+++.+|+++| .++.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~P~~~~~~~~lg----------------------~~~~ 81 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIYDFYNVDYIMGLA----------------------AIYQ 81 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHH
Confidence 444444555555555555555555543 55555555555555555555555555 5555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.+|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+..|++++++.|+
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-PLKAKECFELVIQHSND 136 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCC
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC
Confidence 55555555555555555555555555555555555555 55555555555555554
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=1.1e-17 Score=142.93 Aligned_cols=121 Identities=11% Similarity=0.027 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+-.+-..+++++.++|++..+++.+| .++...|++++|+.+|++++.++|+++.+|++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg----------------------~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 75 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYA----------------------YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMG 75 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 33444578889999999999999999 88999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
+|.++..+|+ +++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+..
T Consensus 76 lg~~~~~~g~-~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 76 LAAIYQIKEQ-FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcc-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999 99999999999999999999999999999999999999999999999998865
No 99
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=1.1e-17 Score=162.17 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=144.8
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---------------GESWMQYAK 274 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 274 (436)
.++++++|+..|++++..+|+++.++..+|.+++..|++++|+..|++++.++|.+ ..+|.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 354 (436)
++...++ +++|+.+|+++++++|++..+++.+| .++..+|++++|+.+|+++++++|
T Consensus 205 ~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg----------------------~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 205 CHLKLQA-FSAAIESCNKALELDSNNEKGLSRRG----------------------EAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHHCC
Confidence 9999985 99999999999999999999999999 889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 013800 355 GDGEIMSQYAKLVWELHHDHDKA-LCYFERAVQA 387 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~~A-~~~~~~al~~ 387 (436)
++..++..++.++..+|+ +++| ...|++++..
T Consensus 262 ~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRR-QLAREKKLYANMFER 294 (336)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999 9988 5577777654
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=6.9e-17 Score=154.26 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=93.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHH
Q 013800 239 AQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--D----SNILAA 306 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~----~~~~~~ 306 (436)
|.+|...|++++|+.+|.+++++.+.. ..++.++|.++...++ +++|+.+|++++++.+. + ..++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR-MPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666666666666666654321 3455566666555543 66666666666665322 1 233444
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~ 380 (436)
+| .+|.. |++++|+.+|++++++.+.. ..++.++|.++..+|+ +++|+.+
T Consensus 122 lg----------------------~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~ 177 (307)
T 2ifu_A 122 AG----------------------KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAAS 177 (307)
T ss_dssp HH----------------------HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HH----------------------HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 44 55555 66666666666666655432 3456666666666666 6666666
Q ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 381 FERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 381 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
|++++.+.|.+ ..++..++.++..+|++++|+.+|++++ +.|.+..
T Consensus 178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 66666654432 1345555666666666666666666666 6665543
No 101
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=4e-17 Score=160.30 Aligned_cols=211 Identities=12% Similarity=0.080 Sum_probs=179.0
Q ss_pred cCCCChHHHHHhhcCCCCC-----CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVP-----GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH-------PLLLRNYAQLLQK 244 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~la~~~~~ 244 (436)
.++..|..++..++.+... ..+.++..+|.++...|++++|+.++++++++.+.. +.++..+|.++..
T Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 3667888999999887332 235789999999999999999999999999975433 4689999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHH
Q 013800 245 KGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAAL-----AA-PQDSNILAAYACFLW 312 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~ 312 (436)
.|++++|+.+|++++++.+.. ..++.++|.++...++ +++|+.+|+++++ .+ |....++..+|.++.
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 999999999999999885543 3589999999999975 9999999999999 46 778899999999999
Q ss_pred HccCchHHHHHHHHHHHH-----------------hHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 313 EMEDDGEDDKAQEEHIQV-----------------LPIQSKGD---LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~-----------------~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
..|++++|...+++++.. .++...|+ +++|+.++++. ...|....++..+|.++...|+
T Consensus 276 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~ 354 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKN 354 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999987765 56667788 78888888776 3334456789999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 013800 373 DHDKALCYFERAVQASPA 390 (436)
Q Consensus 373 d~~~A~~~~~~al~~~p~ 390 (436)
+++|+.+|++++++...
T Consensus 355 -~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 355 -FQKASAYFLKVEQVRQL 371 (383)
T ss_dssp -HHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 99999999999987543
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.71 E-value=4e-16 Score=140.72 Aligned_cols=177 Identities=14% Similarity=0.066 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR---DQHRALTYFE 291 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---d~~~A~~~~~ 291 (436)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. ++ ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4578889998886 68899999999999999999999999999875 688999999988876 42 6999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS----KGDLEGAEEYFSRAILANP--GDGEIMSQYAK 365 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 365 (436)
++++ +.++.+++++| .+|.. .+++++|+.+|+++++..+ .++.++++||.
T Consensus 78 ~A~~--~g~~~a~~~Lg----------------------~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLA----------------------RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133 (212)
T ss_dssp HHHH--TTCHHHHHHHH----------------------HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHH----------------------HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 9954 57899999999 66665 7899999999999998887 35899999999
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-----ChHHHHHHHHHHHhhC
Q 013800 366 LVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWET-E-----EDEDDSKSSDQFQQVA 422 (436)
Q Consensus 366 ~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~l~ 422 (436)
+|.. .++ +++|+.+|++++++ +.++.+++++|.+|... | ++++|+.+|+++.+..
T Consensus 134 ~y~~g~g~~~d-~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 134 IYASGVHGPED-DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTSSSSCC-HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9988 767 99999999999988 66778899999998764 3 8999999999998873
No 103
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.71 E-value=2e-15 Score=145.20 Aligned_cols=223 Identities=9% Similarity=0.035 Sum_probs=166.5
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD-DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK-G-DLYRAEDY 254 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~-g-~~~~A~~~ 254 (436)
...++..++..++.+.+ .+..+|...+.++...| .+++++..+.+++..+|++..+|..++.++... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 33456677777777777 67777777777777777 477777777777777777777777777777776 6 77777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013800 255 YNHATMADPGDGESWMQYAKLVWELHRDQH--------RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 326 (436)
+.++++.+|.+..+|..++.++...+. ++ +++++++++++.+|.+..+|...+
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~------------------ 208 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW------------------ 208 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH------------------
Confidence 777777777777777777777776664 55 777777777777777777777777
Q ss_pred HHHHhHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------------------HHHHHHH
Q 013800 327 HIQVLPIQSKGD-------LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD-------------------HDKALCY 380 (436)
Q Consensus 327 ~~~~~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d-------------------~~~A~~~ 380 (436)
.++...++ ++++++++++++.++|++..+|+++..++...|+. ..+-...
T Consensus 209 ----~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 209 ----YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp ----HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred ----HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 55555554 78999999999999999999999999999888773 2233333
Q ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-hhCCC
Q 013800 381 FERAVQAS------PADSHVLAAYACFLWETEEDEDDSKSSDQFQ-QVAPI 424 (436)
Q Consensus 381 ~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~l~p~ 424 (436)
+...+... +..+.++..++.+|.+.|+.++|+++++... +.+|.
T Consensus 285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 33333322 4678999999999999999999999999976 55664
No 104
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.71 E-value=1.5e-17 Score=155.19 Aligned_cols=193 Identities=10% Similarity=-0.084 Sum_probs=170.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------
Q 013800 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNY-------AQLLQKKGDLYRAEDYYNHATMADPGDG----------------- 266 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------- 266 (436)
-+++..|.+.|.+++.++|+..++|..+ +.++...++..+++..+++++.+.|...
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 5999999999999999999999999999 8999999999999999999999877543
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013800 267 ----ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 267 ----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
.++..++.++...++ |++|.+.|+.++...|++. +++.++ .++.+.++|++|
T Consensus 99 ~~r~dl~LayA~~L~~~g~-y~eA~~~l~~~~~~~p~~~-~~~~~a----------------------~l~~~~~r~~dA 154 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGN-YADAMEALEAAPVAGSEHL-VAWMKA----------------------VVYGAAERWTDV 154 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTC-HHHHHHHHTSSCCTTCHHH-HHHHHH----------------------HHHHHTTCHHHH
T ss_pred CCHhHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCchH-HHHHHH----------------------HHHHHcCCHHHH
Confidence 445568888888875 9999999999999999888 999999 889999999999
Q ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 343 EEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PA-DSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 343 ~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
+.+|++++...+.. ..+++++|.++..+|+ +++|+.+|++++... |. ...+++.+|.++.++|+.++|...|++
T Consensus 155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999887653221 4589999999999999 999999999998544 55 567999999999999999999999999
Q ss_pred HHhhCCCChhHH
Q 013800 418 FQQVAPIRQGAV 429 (436)
Q Consensus 418 al~l~p~~~~a~ 429 (436)
++..+|. ..+.
T Consensus 234 a~a~~P~-~~~~ 244 (282)
T 4f3v_A 234 LQTTHPE-PKVA 244 (282)
T ss_dssp HHHHSCC-HHHH
T ss_pred HHhcCCc-HHHH
Confidence 9999998 4433
No 105
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=2.8e-17 Score=155.08 Aligned_cols=197 Identities=15% Similarity=0.067 Sum_probs=161.9
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.+..+..+|..+...|++++|+.+|++++..+|+++.++.++|.++...|++++|+..|+++++++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
...++ +++|+..|+++++++|++...+..... ... +..++..+........|.+
T Consensus 83 ~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~~----------------------~~~---~~~~~~~~~~~~~~~~~~~ 136 (281)
T 2c2l_A 83 LEMES-YDEAIANLQRAYSLAKEQRLNFGDDIP----------------------SAL---RIAKKKRWNSIEERRIHQE 136 (281)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCCCCSHHH----------------------HHH---HHHHHHHHHHHHHTCCCCC
T ss_pred HHcCC-HHHHHHHHHHHHHhCccchhhHHHHHH----------------------HHH---HHHHHHHHHHHHHHHHhhh
Confidence 99975 999999999999999876432221111 111 1122233333444567788
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhC
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET-EEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~ 422 (436)
..+...++.++ .|+ +++|++.++++++++|++......++.++.+. +.+++|.+.|.++.+..
T Consensus 137 ~~i~~~l~~l~--~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 137 SELHSYLTRLI--AAE-RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp CHHHHHHHHHH--HHH-HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 88888887765 577 99999999999999999888888888777776 67889999999887643
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=3.7e-17 Score=169.02 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-C
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD----------LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR-D 282 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-d 282 (436)
.++|++.+.+++..+|++..+|..++.++...|+ +++|+++++++++.+|++..+|..++.++...+. +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 4788999999999999999999999999999988 9999999999999999999999999999888862 3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-DLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+++|+++++++++++|.+..+|...+ .+....| .++++++++.++++.+|.+..+|+
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~----------------------~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRR----------------------FVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhhccccccHHHHHH----------------------HHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 79999999999999999999999999 7777888 899999999999999999999999
Q ss_pred HHHHHHHHh--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH------------HHHHH
Q 013800 362 QYAKLVWEL--------------HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED------------DSKSS 415 (436)
Q Consensus 362 ~la~~~~~~--------------g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~ 415 (436)
+++.++..+ +. +++|++++.+|+.++|++..+|..++.++...+++++ |+..|
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~-~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f 261 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHH-HHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHhhcccccccccccccHHH-HHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEe
Confidence 999999886 55 8999999999999999999999999999999988766 44556
Q ss_pred HHHHhhCCC
Q 013800 416 DQFQQVAPI 424 (436)
Q Consensus 416 ~~al~l~p~ 424 (436)
.+++.+.|.
T Consensus 262 ~~~i~~~~~ 270 (567)
T 1dce_A 262 SRPLTVGSR 270 (567)
T ss_dssp EEEECTTBT
T ss_pred ccceecccc
Confidence 666666554
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=3e-15 Score=122.24 Aligned_cols=133 Identities=22% Similarity=0.417 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+|++++...|.+..++..++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~----- 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLG----- 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHCCCchHHHHHHH-----
Confidence 345555555555555555555555555555555555555555555542 55555555555555555555555555
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.++...|++++|+.++++++...|.+..++..+|.++...|+ +++|+..+++++..+|.
T Consensus 77 -----------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 77 -----------------NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPR 135 (136)
T ss_dssp -----------------HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSTT
T ss_pred -----------------HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc-HHHHHHHHHHHHccCCC
Confidence 555555555555555555555555555555555555555555 55555555555555553
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.69 E-value=6.2e-17 Score=137.61 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=77.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...++ +++|+.+|++++.++|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence 345666666666666666666666666666666666666666666666666666666666653 6666666666666666
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+++.+++.+| .++...|++++|+.+|+++++++|+++..
T Consensus 87 ~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAA----------------------ECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 6666666666 56666666666666666666666655443
No 109
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.69 E-value=1.6e-15 Score=148.08 Aligned_cols=224 Identities=16% Similarity=0.081 Sum_probs=183.4
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE 267 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 267 (436)
..+...|.++...|++++|+.++++++...|... .++..+|.++...|++++|+..+++++.+.+.. ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456677888899999999999999999887553 267889999999999999999999999976543 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------- 330 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------- 330 (436)
++..+|.++...|+ +++|+.+|++++++. |....++.++|.++...|++++|...+.+.+..
T Consensus 95 ~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 95 SLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 46789999888875 999999999999875 334567788999999999999999999977654
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----
Q 013800 331 --------LPIQSKGDLEGAEEYFSRAILANPG--DGEIMS-----QYAKLVWELHHDHDKALCYFERAVQASPAD---- 391 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~-----~la~~~~~~g~d~~~A~~~~~~al~~~p~~---- 391 (436)
.++...|++++|+.++++++.+.+. .+..+. .++.++...|+ +++|...+++++...|..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD-KAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC-HHHHHHHHHhCCCCCCCcchhh
Confidence 6778899999999999999987432 211221 34455788999 999999999998877653
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
...+..++.++...|++++|...+++++...+.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999887543
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=9.7e-17 Score=136.37 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=104.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
...|++++.++|++..+++.+|.+++..++ +++|+..|++++.++|+++.+|+.+| .
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------~ 63 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVLDHYDSRFFLGLG----------------------A 63 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------H
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCcccHHHHHHHH----------------------H
Confidence 456788888899999999999988888875 99999999999999999999999999 8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
++...|++++|+.+|++++.++|+++.+++++|.++..+|+ +++|+..|++++++.|+++...
T Consensus 64 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 64 CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCCcch
Confidence 88888999999999999999999999999999999999999 9999999999999888876543
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=6.1e-15 Score=120.39 Aligned_cols=134 Identities=15% Similarity=0.329 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.+++.+|.++...++ +++|+..|+++++..|.+..++..++ .++...|++++|+.++
T Consensus 2 ~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~ 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLG----------------------NAYYKQGDYDEAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHcCc-HHHHHHHHHHHHHcCCcchhHHHHHH----------------------HHHHHhcCHHHHHHHH
Confidence 467889999998874 99999999999999999999999999 8888899999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 347 SRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++++...|.+..++..+|.++...|+ +++|+..+++++...|.+..++..++.++...|++++|+..+++++.+.|.
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999999999875
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=3.2e-15 Score=134.83 Aligned_cols=186 Identities=17% Similarity=0.089 Sum_probs=158.6
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG----DLYRAEDYYN 256 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g----~~~~A~~~~~ 256 (436)
++..++.++... +++.++..+|.++...+++++|+.+|+++++. .++.+++++|.+|.. + ++++|+.+|+
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455566666543 67789999999999999999999999999886 589999999999998 7 9999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013800 257 HATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAP--QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
++++ +.++.+++.+|.+|.. . +|+++|+.+|+++++..+ .++.++++||
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg---------------------- 132 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGA-TDVAHAITLLQDAARDSESDAAVDAQMLLG---------------------- 132 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTSHHHHHHHHHHH----------------------
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCCcchHHHHHHHH----------------------
Confidence 9965 5799999999999876 4 469999999999999988 4599999999
Q ss_pred hHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 LPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH-----HDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.+|.. .+++++|+.+|+++++. +.++.++++||.+|.... .|+++|+.+|+++.+... ..+...++.
T Consensus 133 ~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 133 LIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 77777 78999999999999998 677889999999998743 149999999999999854 455555554
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.66 E-value=3.2e-16 Score=131.84 Aligned_cols=122 Identities=17% Similarity=0.049 Sum_probs=76.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 220 YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 220 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
.|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...++ +++|+.+|++++.++|+
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGALMDIN 84 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCC
Confidence 45556666666666666666666666666666666666666666666666666666666653 66666666666666666
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
++.+++.+| .++...|++++|+.+|+++++++|+++.......
T Consensus 85 ~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 85 EPRFPFHAA----------------------ECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp CTHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred CcHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 666666666 5666666666666666666666666554444333
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.66 E-value=1.6e-15 Score=144.65 Aligned_cols=187 Identities=10% Similarity=0.063 Sum_probs=153.3
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--D----GE 267 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~ 267 (436)
.+...|.++...|++++|+.+|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++++.+. + ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555778899999999999999999986532 468899999999999999999999999998543 2 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
++.++|.+|.. + ++++|+.+|++++++.|.. ..++.++| .++..+|++++
T Consensus 118 ~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~ 173 (307)
T 2ifu_A 118 ALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKAS----------------------RLLVRQQKFDE 173 (307)
T ss_dssp HHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred HHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH----------------------HHHHHcCCHHH
Confidence 78899999877 5 6999999999999997653 45677778 88899999999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHH
Q 013800 342 AEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-----HVLAAYACFLWETEEDED 410 (436)
Q Consensus 342 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~ 410 (436)
|+.+|++++++.|.+ ..++..+|.++..+|+ +++|+.+|++++ ++|... ..+..++..+ ..|+.+.
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 999999999986643 3478889999999999 999999999999 999754 2344555544 5677655
Q ss_pred HHH
Q 013800 411 DSK 413 (436)
Q Consensus 411 A~~ 413 (436)
+..
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 115
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=9.8e-15 Score=147.08 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=124.6
Q ss_pred hhhhHhhhhhhCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 200 AGEVVDLIMPNFD---DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK----GDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 200 ~~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
++..+|.++...| ++++|+.+|+++++..|..+..++++|.+|... +++++|+.+|+++. |.++.+++.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 5555555555555 555555555555555555555555555555433 45555555555554 5555555555
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-----CHHHHHHH
Q 013800 273 AKLVW--ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-----DLEGAEEY 345 (436)
Q Consensus 273 a~~~~--~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-----~~~~A~~~ 345 (436)
|.+|+ ...+++++|+.+|+++++. +++.+++++| .+|. .| ++++|+.+
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg----------------------~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLG----------------------KLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHH----------------------HHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH----------------------HHHH-cCCCCCCCHHHHHHH
Confidence 55533 2223455555555555533 2555555555 5555 45 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQ 417 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 417 (436)
|+++. +.++.++++||.+|.. ..+ +++|+.+|+++.+ +.++.+.+++|.+|.. ..+..+|..+|++
T Consensus 310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 310 FEKAV---GREVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHTTT---TTCHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHh---CCCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99998 8889999999988876 225 9999999999876 4567889999999875 4588999999999
Q ss_pred HHhhC
Q 013800 418 FQQVA 422 (436)
Q Consensus 418 al~l~ 422 (436)
+.+..
T Consensus 384 A~~~g 388 (452)
T 3e4b_A 384 AKAQD 388 (452)
T ss_dssp HHTTC
T ss_pred HHHCC
Confidence 98864
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=2.2e-16 Score=140.38 Aligned_cols=182 Identities=12% Similarity=0.011 Sum_probs=117.3
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
+.+......|+++++.+.+.......+..+..+..+|.+++..|++++|+..|++++.+.|.++..... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~-------- 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--I-------- 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--H--------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--h--------
Confidence 344455556666666666666666555566666666666666666666666666666666554321100 0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
.......+ ...++.++| .++...|++++|+.+|+++++++|+++.+++.
T Consensus 79 ----~~~~~~~~-----~~~~~~~la----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 127 (198)
T 2fbn_A 79 ----LLDKKKNI-----EISCNLNLA----------------------TCYNKNKDYPKAIDHASKVLKIDKNNVKALYK 127 (198)
T ss_dssp ----HHHHHHHH-----HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ----HHHHHHHH-----HHHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 00000000 136778888 88899999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HHHHHHHhhCCCCh
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KSSDQFQQVAPIRQ 426 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~p~~~ 426 (436)
+|.++..+|+ +++|+..|+++++++|++..++..++.++..+++..++. ..|.+.+.....+.
T Consensus 128 lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 191 (198)
T 2fbn_A 128 LGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYE 191 (198)
T ss_dssp HHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 9999999999 999999999999999999999999999999999888877 55666665544443
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.65 E-value=1.2e-15 Score=132.71 Aligned_cols=131 Identities=10% Similarity=0.064 Sum_probs=112.7
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL-VWELHRDQ-- 283 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~d~-- 283 (436)
-+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...+ ++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-QHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-Ccch
Confidence 345568999999999999999999999999999999999999999999999999999999999999998 55655 47
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
++|+.+|+++++.+|++..+++.+| .++...|++++|+..|+++++++|.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLA----------------------SDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999999999999999999 888888999999999999999999875544
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.65 E-value=4.6e-16 Score=130.81 Aligned_cols=125 Identities=16% Similarity=0.015 Sum_probs=102.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
..|++++.++|++...++.+|.+++..++ +++|+..|++++..+|+++.+|+.+| .+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------~~ 61 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCMLDHYDARYFLGLG----------------------AC 61 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhCCccHHHHHHHH----------------------HH
Confidence 46777788888888888889988888874 99999999999999999999998888 88
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+...|++++|+.+|++++.++|+++.+++++|.++..+|+ +++|+..|+++++++|+++........+
T Consensus 62 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 62 RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD-LDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 8888899999999999999999999999999999999988 8999999999998888876554444433
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.9e-15 Score=120.89 Aligned_cols=113 Identities=18% Similarity=0.080 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+..+|..++..|++++|+..|+++++++|.++.+|..+|.++...++ +++|+.+|+++++++|++..+++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg--- 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKA--- 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHH---
Confidence 34445555555555555555555555555555555555555555444442 55555555555555555555555555
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN------PGDGEIMSQYAKLV 367 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 367 (436)
.++...|++++|+..|+++++++ |.+..++..++.+.
T Consensus 80 -------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 -------------------TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred -------------------HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 44444555555555555555554 44444444444443
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=1.1e-14 Score=130.06 Aligned_cols=133 Identities=16% Similarity=0.090 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
..++.+|.++...|++++|+..|++++ +| ++.++..+|.++...++ +++|+.+|+++++++|++..+++.+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~lg---- 78 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLAVAYFQRG---- 78 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHH----
Confidence 346778888888888888888888885 33 67888888888888764 88888888888888888888888888
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCCHHH
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG----------------EIMSQYAKLVWELHHDHDK 376 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~d~~~ 376 (436)
.++...|++++|+..|+++++..|.+. .+++++|.++..+|+ +++
T Consensus 79 ------------------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 139 (213)
T 1hh8_A 79 ------------------MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKK 139 (213)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHH
T ss_pred ------------------HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHH
Confidence 788888888889999999888877766 999999999999999 999
Q ss_pred HHHHHHHHHHhCCCCH
Q 013800 377 ALCYFERAVQASPADS 392 (436)
Q Consensus 377 A~~~~~~al~~~p~~~ 392 (436)
|+..|++++++.|++.
T Consensus 140 A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 140 AEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHcCcccc
Confidence 9999999999999864
No 121
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.63 E-value=6.2e-16 Score=137.45 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=81.8
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----------------LLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 262 (436)
..+..+|..+...|++++|+.+|++++...|.++ .++.++|.++...|++++|+.+++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999999999876 666666776666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++.+++.+|.++...++ +++|+.+|+++++++|++..++..++
T Consensus 119 p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 6666666666666666653 66666666666666666666666666
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=2.3e-14 Score=122.20 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...++ +++|+.+|+++++++|.+..+++.+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~a---- 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA---- 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHH----
Confidence 4455555555555555555555555555555555555555555555442 55555555555555555555555555
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCHHHHHHHHHHHH
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL--VWELHHDHDKALCYFERAV 385 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~d~~~A~~~~~~al 385 (436)
.++...|++++|+.+|+++++++|.+..++..++.+ +...|+ +++|+..+.++.
T Consensus 89 ------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ------------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKR 144 (166)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ------------------HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchH
Confidence 445555555555555555555555555554333332 444455 555555555443
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.63 E-value=6.5e-15 Score=128.11 Aligned_cols=130 Identities=9% Similarity=0.116 Sum_probs=114.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
+...|++++|+..++++++.+|.++.+|..+|.++...++ +++|+.+|+++++++|+++.++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la------------- 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLRGENAELYAALA------------- 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCSCHHHHHHHH-------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH-------------
Confidence 3467889999999999999999999999999999988875 99999999999999999999999999
Q ss_pred HHHHHHHHHhH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 322 KAQEEHIQVLP-IQSKGDL--EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 322 ~~~~~~~~~~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
.+ +...|++ ++|+.+|+++++.+|++..+++.+|.++...|+ +++|+..|+++++++|++....
T Consensus 86 ---------~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 86 ---------TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp ---------HHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCTTSCHH
T ss_pred ---------HHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCCCCccHH
Confidence 66 6788998 999999999999999999999999999999999 9999999999999999876544
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.1e-14 Score=119.32 Aligned_cols=117 Identities=14% Similarity=0.024 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
..+..|..+|..++..++ +++|+.+|+++++++|+++.++.++| .++...|++++|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a----------------------~~~~~~~~~~~A~ 58 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPEDARGYSNRA----------------------AALAKLMSFPEAI 58 (126)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHhcCHHHHH
Confidence 456778889999888874 99999999999999999999999999 8888899999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 013800 344 EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWE 404 (436)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 404 (436)
..|+++++++|+++.+++.+|.++..+|+ +++|+..|+++++++ |.+..++..++.+...
T Consensus 59 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 59 ADCNKAIEKDPNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 999999999999999 8888888888877654
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=1.1e-14 Score=130.04 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=123.5
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|.++...|++++|+..|++++ +| ++.+++.+|.++...|++++|+.+|++++.++|.++.++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 356788999999999999999999996 44 789999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDS----------------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
.++ +++|+.+|++++++.|.+. .+++.+| .++...|++++|
T Consensus 84 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~~~A 140 (213)
T 1hh8_A 84 TEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA----------------------FMYAKKEEWKKA 140 (213)
T ss_dssp TTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH----------------------HHHHHTTCHHHH
T ss_pred ccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHH----------------------HHHHHccCHHHH
Confidence 875 9999999999999888876 8999999 888999999999
Q ss_pred HHHHHHHHHhCCCC
Q 013800 343 EEYFSRAILANPGD 356 (436)
Q Consensus 343 ~~~~~~al~~~p~~ 356 (436)
+.+|+++++++|++
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 99999999999986
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.62 E-value=2.9e-14 Score=134.78 Aligned_cols=172 Identities=12% Similarity=0.014 Sum_probs=143.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD- 300 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~- 300 (436)
+|.....+...+..+...|++++|++.+.++++..+.... .++.+|.++...+ ++++|+.+|++++.+.+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTCCCSS
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCC
Confidence 3444566778889999999999999999999998887543 3556776666655 5999999999999876543
Q ss_pred -----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHH
Q 013800 301 -----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI---LANPGDG----EIMSQYAKLVW 368 (436)
Q Consensus 301 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~ 368 (436)
..++..+| .+|...|++++|+.+|++++ +..|++. .+++++|.++.
T Consensus 150 ~~~~~~~~~~~lg----------------------~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 150 DVYQNLYIENAIA----------------------NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp CTTHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 55778888 88999999999999999999 4566643 68999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhhCC
Q 013800 369 ELHHDHDKALCYFERAVQASPA------DSHVLAAYACFLWETEEDEDD-SKSSDQFQQVAP 423 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l~p 423 (436)
.+|+ +++|+.++++++++.+. ...++.++|.++..+|++++| ..+|++++.+..
T Consensus 208 ~~~~-y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 208 LDSR-YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhh-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 9999 99999999999987643 268899999999999999999 888999998753
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.62 E-value=2.6e-14 Score=121.95 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
+..+..+|.+++..++ +++|+.+|+++++.+|.+..++..+| .++...|++++|+.+
T Consensus 13 ~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 13 AEELKTQANDYFKAKD-YENAIKFYSQAIELNPSNAIYYGNRS----------------------LAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHcCCHHHHHHH
Confidence 4678899999998874 99999999999999999999999999 888999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHCCChHHHHHHHHHHHhhC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC--FLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|+++++++|.++.+++.+|.++..+|+ +++|+.+|+++++++|.+..++..++. .+...|++++|+..+.++..+.
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGK-FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999999999999 999999999999999999988855544 4888999999999999887653
No 128
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=3.8e-14 Score=142.75 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=157.9
Q ss_pred ChhhhhhHhhhhhhCCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDS----AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG---DLYRAEDYYNHATMADPGDGESW 269 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~----~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 269 (436)
.+.++..+|.++...+.+ +.+..+++.+...+|. +++.+|.+|...| ++++|+.+|+++.+..+.....+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 345777888888877744 4444455555555553 8899999999999 89999999999999999999988
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 270 MQYAKLVWEL---HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 270 ~~la~~~~~~---~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
+.+|.+|... .+|+++|+.+|+++. |+++.+++++|.++... ...+++++|+.+|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~-------------------~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF-------------------PELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS-------------------GGGCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC-------------------CCCCCHHHHHHHH
Confidence 9999887543 146899999999988 88999999999432210 3589999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHH
Q 013800 347 SRAILANPGDGEIMSQYAKLVWELH-----HDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQ 417 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g-----~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 417 (436)
+++.+. .++.++++||.+|. .| + +++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|++
T Consensus 275 ~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d-~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 275 DNGRAA--DQPRAELLLGKLYY-EGKWVPAD-AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHHT--TCHHHHHHHHHHHH-HCSSSCCC-HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHH-cCCCCCCC-HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 999875 48999999999998 56 6 999999999998 8999999999998887 4499999999999
Q ss_pred HHhh
Q 013800 418 FQQV 421 (436)
Q Consensus 418 al~l 421 (436)
+.+.
T Consensus 348 Aa~~ 351 (452)
T 3e4b_A 348 AARN 351 (452)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9885
No 129
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=5e-15 Score=145.20 Aligned_cols=167 Identities=13% Similarity=0.009 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADP------GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------- 300 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------- 300 (436)
.++.+|..+...|++++|+.+|++++.+.+ ..+.++..+|.++...++ +++|+.++++++++.+..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ-THVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhCCCchhhH
Confidence 577899999999999999999999998742 246789999999999975 999999999999986542
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~ 374 (436)
..++..+| .++...|++++|+.+|++++++.+ ....++.++|.++..+|+ +
T Consensus 182 ~~~~~~lg----------------------~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~ 238 (378)
T 3q15_A 182 IQSLFVIA----------------------GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-D 238 (378)
T ss_dssp HHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-H
T ss_pred HHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-H
Confidence 34556677 888888999999999999888643 124578889999999998 9
Q ss_pred HHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 375 DKALCYFERAVQ-----ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 375 ~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++|+.+|++++. .+|....++..+|.++..+|++++|+.++++++++.+.
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999988 67777788899999999999999999999999988544
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.61 E-value=1.2e-14 Score=125.08 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
++..++.+|.++...|++++|+.+|+++++++|.++.+|..+|.++...++ +++|+.+|+++++++|++..+++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg-- 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-HEKAAEDAELATVVDPKYSKAWSRLG-- 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHH--
Confidence 345555666666666666666666666666666666666666655555543 56666666666666665555555555
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
.++..+|++++|+.+|+++++++|++..+|..++.
T Consensus 87 --------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 --------------------LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp --------------------HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred --------------------HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 55555556666666666666665555554444443
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.61 E-value=1.5e-16 Score=148.49 Aligned_cols=197 Identities=12% Similarity=-0.070 Sum_probs=171.9
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhH-------hhhhhhCCCHHHHHHHHHHHHHhCCCCH------------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVV-------DLIMPNFDDSAEAEEYYKRMIDEYPCHP------------------ 232 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~P~~~------------------ 232 (436)
++..+..+|.++..+++ +..++|.++ +.++...+++.+++..+++.+.+.|...
T Consensus 21 d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 45577889999999999 899999999 8999999999999999999999877543
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 013800 233 ---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD--SNILAAY 307 (436)
Q Consensus 233 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~l 307 (436)
++...++.++...|+|++|.+.|..++...|++. +++.+|.+++..++ |++|+.+|++++...+.. ..+++.+
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER-WTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC-HHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC-HHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 4455689999999999999999999999999988 99999999999875 999999999887653221 4578899
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PG-DGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
| .++..+|++++|+.+|++++... |. .+++++++|.++..+|+ .++|...|+++
T Consensus 178 G----------------------~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a 234 (282)
T 4f3v_A 178 G----------------------VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-ESAAVALLEWL 234 (282)
T ss_dssp H----------------------HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred H----------------------HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 9 88999999999999999998654 55 66899999999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHH
Q 013800 385 VQASPADSHVLAAYACF 401 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~ 401 (436)
+..+|+ ..++..|...
T Consensus 235 ~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 235 QTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHSCC-HHHHHHHHCT
T ss_pred HhcCCc-HHHHHHHhCC
Confidence 999999 8777766543
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=2.1e-15 Score=142.16 Aligned_cols=168 Identities=11% Similarity=-0.004 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++..+..+|.++...|++++|+..|+++++.+|.++.++.++|.++...++ +++|+..|+++++++|++..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999985 99999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
.++..+|++++|+..|+++++++|++...+......... ..++...........
T Consensus 80 ----------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 80 ----------------------QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----IAKKKRWNSIEERRI 133 (281)
T ss_dssp ----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----HHHHHHHHHHHHTCC
T ss_pred ----------------------HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 889999999999999999999998764333322222222 233334444444567
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
|.+..+...++.++ .|++++|++.+++++++.|..
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDD 168 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccch
Confidence 78888888887765 689999999999999998864
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=2e-14 Score=116.90 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
.++..+..+|.++...|++++|+..|++++...|.++.++..+|.++...++ +++|+.++++++..+|++..++..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~- 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN-YAGAVQDCERAICIDPAYSKAYGRMG- 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhcCccCHHHHHHHH-
Confidence 3445556666666666666666666666666666666666666655555543 56666666666655555555555555
Q ss_pred HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
.++...|++++|+.+|+++++.+|++..++..++.++..+|+
T Consensus 88 ---------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 ---------------------LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp ---------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555556666666666666555555555555555555554
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-14 Score=117.80 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la--- 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE-FQLALKDCEECIQLEPTFIKGYTRKA--- 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCchHHHHHHH---
Confidence 34444444444444444444444444444444444444444444444332 44444444444444444444444444
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++...|++++|+.+|+++++.+|.+..++..++.++..+
T Consensus 92 -------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 -------------------AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444443
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.59 E-value=1.5e-14 Score=119.36 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+.++.++|.+++..|+|++|+.+|+++++++|+++.+|.++|.++..+++ +++|+.+|+++++++|++...+..++.++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45566777777777777777777777777777777777777777777764 77777777777777776554444444444
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
..+| .++..+|++++|+.+|++++...|+ ++....+.
T Consensus 87 ~~lg---------------~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAG---------------NAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHH---------------HHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHH---------------HHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 4444 8888899999999999999988875 55554443
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=7.9e-14 Score=131.79 Aligned_cols=165 Identities=12% Similarity=-0.034 Sum_probs=140.9
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE 267 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 267 (436)
.+...+..+...|++++|+..++++++..+... ..++.+|.++...|++++|+.+|++++...+.. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445667788899999999999999999888654 346678889999999999999999999876543 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAA---LAAPQDS----NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++..+|.+|...++ +++|+.+|++++ +..|++. .+++++| .+|..+|+++
T Consensus 157 ~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg----------------------~~y~~~~~y~ 213 (293)
T 2qfc_A 157 IENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA----------------------KALYLDSRYE 213 (293)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHH----------------------HHHHHHhhHH
Confidence 89999999999875 999999999999 5566643 5778888 8899999999
Q ss_pred HHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhC
Q 013800 341 GAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHDKA-LCYFERAVQAS 388 (436)
Q Consensus 341 ~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~~A-~~~~~~al~~~ 388 (436)
+|+.+|++++++.+. ...+++++|.++..+|+ +++| ..+|++++.+.
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHH
Confidence 999999999988543 27899999999999999 9999 88899998753
No 137
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=1.2e-15 Score=154.09 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=131.7
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---------------GESWMQYA 273 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la 273 (436)
...+++++|+..|++++...|+.+..+..+|.+++..|+|++|+..|+++++++|.+ ..+|.++|
T Consensus 245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999999999999999999999999998 68899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013800 274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
.++..+++ |++|+.+|+++++++|++..+++.+| .++..+|++++|+..|+++++++
T Consensus 325 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~~g----------------------~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 MCYLKLRE-YTKAVECCDKALGLDSANEKGLYRRG----------------------EAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHHhC
Confidence 99888875 99999999999999999999999999 88888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 013800 354 PGDGEIMSQYAKLVWELHHDHDKALC-YFERAV 385 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~~A~~-~~~~al 385 (436)
|++..++..++.++..+++ +++|.. .|.+++
T Consensus 382 P~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~f 413 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKE-HNERDRRIYANMF 413 (457)
T ss_dssp ----CHHHHHHHHHHHHHH-HHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999888 777764 344433
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.59 E-value=3.4e-14 Score=115.53 Aligned_cols=125 Identities=16% Similarity=0.250 Sum_probs=116.8
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
.+|.+..++..+|.++...++ +++|+..|++++...|++..++..+| .++...|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~ 63 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVEN-FEAAVHFYGKAIELNPANAVYFCNRA----------------------AAYSKLGNYA 63 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHH
T ss_pred cchhhhHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHHhhchH
Confidence 345567889999999988874 99999999999999999999999999 8888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
+|+.++++++..+|.++.++..+|.++...|+ +++|+..|++++++.|++..++..++.++..+|+++
T Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNK-HVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999 999999999999999999999999999999988763
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.58 E-value=2.6e-14 Score=122.88 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
.+.++..++.+|.+++..++ |++|+.+|+++++++|++..+++++| .++...|++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~----------------------~~~~~~g~~~~ 63 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE-YSKAIDLYTQALSIAPANPIYLSNRA----------------------AAYSASGQHEK 63 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcCHHHHHHHH----------------------HHHHHccCHHH
Confidence 34467889999999999875 99999999999999999999999999 88899999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
|+.+|+++++++|+++.+|+++|.++..+|+ +++|+.+|+++++++|++..++..++...
T Consensus 64 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 64 AAEDAELATVVDPKYSKAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999988776666543
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.58 E-value=6.2e-14 Score=134.84 Aligned_cols=185 Identities=14% Similarity=0.130 Sum_probs=144.0
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
....++..+..+....+..++|+.++.+++.++|++..+|..++.++...| .+++++.++.+++..+|++..+|..++.
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 344666677777777777788888888888888888888888888888888 4888888888888888888888888888
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH--------HHHHH
Q 013800 275 LVWEL-HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE--------GAEEY 345 (436)
Q Consensus 275 ~~~~~-~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~--------~A~~~ 345 (436)
++... +.+++++++++.++++.+|.+..+|...+ .++...|.++ +++++
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~----------------------wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLH----------------------WLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHH----------------------HHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhccccccchhhHHHHHHH
Confidence 88777 42478888888888888888888888888 6666666666 78888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHD------HDKALCYFERAVQASPADSHVLAAYACFLW 403 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 403 (436)
+.++++.+|.|..+|.+++.++..+++. ++++++++.+++.++|++.. .+..-..++
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S-aW~Ylr~Ll 252 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS-AWNYLRGFL 252 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 8888888888888888888888777641 47788888888888887643 244444433
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-14 Score=116.69 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=114.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
.|.....+..+|.++...++ +++|+.+|+++++.+|++..++..+| .++...|++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la----------------------~~~~~~~~~~~ 68 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGD-YPQAMKHYTEAIKRNPKDAKLYSNRA----------------------ACYTKLLEFQL 68 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTC-SHHHHHHHHHHHTTCTTCHHHHHHHH----------------------HHHTTTTCHHH
T ss_pred CcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH----------------------HHHHHhccHHH
Confidence 45678899999999998875 99999999999999999999999999 88889999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
|+.+|+++++.+|.++.+++.+|.++...|+ +++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 69 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 69 ALKDCEECIQLEPTFIKGYTRKAAALEAMKD-YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 9999999999999999999999999999988764
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.1e-13 Score=143.01 Aligned_cols=165 Identities=11% Similarity=0.081 Sum_probs=151.3
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 243 QKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHRD---------QHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 243 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
...|++ ++|++.+.+++..+|++..+|+.++.++...+.+ +++++++++++++.+|++..+|...+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~---- 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC---- 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH----
Confidence 344444 6789999999999999999999999999998754 99999999999999999999999999
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCC
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH-HDHDKALCYFERAVQASP 389 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~d~~~A~~~~~~al~~~p 389 (436)
+++...+ +++++++++.++++++|.+..+|.+.+.++...| . ++++++++.++++.+|
T Consensus 115 ------------------w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~-~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 115 ------------------WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA-PAEELAFTDSLITRNF 175 (567)
T ss_dssp ------------------HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC-HHHHHHHHHTTTTTTC
T ss_pred ------------------HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHCC
Confidence 8888888 7899999999999999999999999999999999 6 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHC--------------CChHHHHHHHHHHHhhCCCChhHHh
Q 013800 390 ADSHVLAAYACFLWET--------------EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 390 ~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.+..+|..++.++..+ +.+++|++++.+++.++|+...+-.
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999999998885 5579999999999999999776543
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.57 E-value=1.6e-15 Score=153.13 Aligned_cols=147 Identities=8% Similarity=0.084 Sum_probs=134.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 013800 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---------------SNILAAYA 308 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------------~~~~~~la 308 (436)
..+++++|+..|++++...|.....+..+|.+++..++ |++|+.+|+++++++|.+ ..+++++|
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999875 999999999999999998 68888999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
.++.++|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+..|+++++++
T Consensus 325 ----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 ----------------------MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVN 381 (457)
T ss_dssp ----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred ----------------------HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHH
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
|++..++..++.++..++++++|.+.
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.57 E-value=2.3e-13 Score=109.62 Aligned_cols=116 Identities=21% Similarity=0.376 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
..+++.+|.++...|++++|+.+|++++...|.+..++..+|.++...++ +++|+.+|+++++..|.+..++..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la--- 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLG--- 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCccHHHHHHHH---
Confidence 34555555555555555555555555555555555555555555555442 55555555555555555555555555
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++...|++++|+.+|+++++.+|.++.++..++.++...
T Consensus 85 -------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 85 -------------------NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 4445555555555555555555555555555555554443
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.56 E-value=4.5e-14 Score=133.50 Aligned_cols=162 Identities=12% Similarity=-0.023 Sum_probs=127.6
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL------LLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWM 270 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 270 (436)
.....+...|++++|+.+++++++..+..+. .+..+|.++...+++++|+.+|++++.+.+.. ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3456778889999999999999998776654 33458888888899999999999999975442 34789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAA---PQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
.+|.+|...++ +++|+.+|+++++.. |. ...+++++| .+|..+|++++|+
T Consensus 160 ~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg----------------------~~y~~~~~y~~A~ 216 (293)
T 3u3w_A 160 AIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA----------------------KALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH----------------------HHHHHTTCHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH----------------------HHHHHHhHHHHHH
Confidence 99999988875 999999999999632 12 234566777 7888888888888
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 344 EYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 344 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
.++++++++.+.. +.+++++|.++..+|+++++|+.+|++|+.+
T Consensus 217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888888875433 6788888888888885368888888888865
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.56 E-value=5.8e-14 Score=115.78 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=96.9
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-------GESWM 270 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 270 (436)
+.++.++|+.+++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999998865 35788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
.+|.++...+. +++|+.+|++++...|+ ++....+
T Consensus 88 ~lg~~~~~~~~-~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQND-LSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 89999888874 99999999999999885 4444333
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.56 E-value=6.1e-14 Score=132.59 Aligned_cols=164 Identities=12% Similarity=0.013 Sum_probs=136.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SN 302 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~ 302 (436)
+...+..+...|++++|+..+++++...+..+. .+..+|.++...+ ++++|+.+|++++.+.+.. ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 445577889999999999999999998877655 2334777766554 5999999999999976542 33
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHH
Q 013800 303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN-------PGDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~d~~ 375 (436)
++.++| .+|..+|++++|+.+|+++++.. +....+++++|.++..+|+ ++
T Consensus 157 ~~~~lg----------------------~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~ 213 (293)
T 3u3w_A 157 IENAIA----------------------NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YE 213 (293)
T ss_dssp HHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HH
Confidence 677888 88999999999999999999632 2234688999999999999 99
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhC
Q 013800 376 KALCYFERAVQASPAD------SHVLAAYACFLWETEE-DEDDSKSSDQFQQVA 422 (436)
Q Consensus 376 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~ 422 (436)
+|+.++++++++.+.. ..++.++|.++..+|+ +++|+++|++++.+.
T Consensus 214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999886543 6899999999999995 699999999999874
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=9.8e-14 Score=114.78 Aligned_cols=119 Identities=14% Similarity=-0.001 Sum_probs=71.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
.+|.++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...++ +++|+.+|+++++++|+++.+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHHHHHH
Confidence 3455566666666666666666666666666666666666666666666665553 666666666666666666666666
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-----DGEIMSQYAKLVW 368 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~ 368 (436)
+| .++...|++++|+..|+++++++|+ +..++..+..+..
T Consensus 83 l~----------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 83 LG----------------------QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HH----------------------HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 66 5555566666666666666666555 4444444444443
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.55 E-value=3.6e-13 Score=108.43 Aligned_cols=121 Identities=18% Similarity=0.397 Sum_probs=110.0
Q ss_pred CCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 262 DPGD-GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 262 ~p~~-~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
+|.. ..++..+|.++...++ +++|+.+|++++...|.+..++..++ .++...|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~~~~~ 60 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLG----------------------NAYYKQGDYD 60 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHH
T ss_pred CccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCcHHHHHHHH----------------------HHHHHhCCHH
Confidence 4555 7789999999888875 99999999999999999999999999 8888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
+|+.+|++++...|.++.++..+|.++...|+ +++|+..|+++++.+|.+..++..++.++...|
T Consensus 61 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999 999999999999999999999999999887654
No 150
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.55 E-value=4.3e-13 Score=146.21 Aligned_cols=217 Identities=10% Similarity=-0.024 Sum_probs=156.9
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+..|..+|..+...|++++|+..|.++ +++..|..+|.++.+.|++++|+++|..+.+..++ +.+...+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHH
Confidence 44567777777777788888888877665 67777777888888888888888888777776633 2223346666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHH
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.++++ +++ ++.|. ...+...+..+|..+...|++++|...|..+-.- .++.++|++++|++.+++|
T Consensus 1177 YAKl~r-lee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1177 LAKTNR-LAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred HHhhcC-HHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 666653 653 33332 2334456667888888888888888888754222 7788888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-
Q 013800 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT- 430 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~- 430 (436)
.+..+|..++.++...|+ |..|..+... +..+| +.+..++..|...|.+++|+.++++++.++|.+.+.-+
T Consensus 1248 ---~n~~aWkev~~acve~~E-f~LA~~cgl~-Iiv~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKE-FRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhH-HHHHHHHHHh-hhcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 556888888888888888 8888877663 44444 45568888999999999999999999999887766543
Q ss_pred hhhhc
Q 013800 431 TANVY 435 (436)
Q Consensus 431 ~an~y 435 (436)
.+.+|
T Consensus 1320 LaiLy 1324 (1630)
T 1xi4_A 1320 LAILY 1324 (1630)
T ss_pred HHHHH
Confidence 55544
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.54 E-value=5.6e-14 Score=114.86 Aligned_cols=102 Identities=22% Similarity=0.107 Sum_probs=92.1
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.+..+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH
Q 013800 280 HRDQHRALTYFERAALAAPQDSN 302 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~ 302 (436)
++ +++|+..|+++++++|++..
T Consensus 99 g~-~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HN-ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HH-HHHHHHHHHHHHC-------
T ss_pred CC-HHHHHHHHHHHHHhCcCCCC
Confidence 86 99999999999999998653
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.54 E-value=1.3e-13 Score=114.06 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=103.1
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013800 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~ 339 (436)
..+|.++..+..+|.+++..++ +++|+.+|++++.++|+++.++..+| .++...|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~----------------------~~~~~~~~~ 59 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLVAVYYTNRA----------------------LCYLKMQQP 59 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCH
T ss_pred CCccccHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhhCcCcHHHHHHHH----------------------HHHHHhcCH
Confidence 3567788899999999888875 99999999999999999999999999 888889999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 013800 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA-----DSHVLAAYACFLWE 404 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~ 404 (436)
++|+..|+++++++|+++.+++.+|.++..+|+ +++|+..|++++.++|+ +..+...+..+...
T Consensus 60 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 60 EQALADCRRALELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999998887 56666666665543
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=5.6e-13 Score=106.25 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
.++.+|.++...|++++|+..|++++..+|.++.++..+|.++...++ +++|+.+++++++.+|++..++..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 344444444444444444444444444444444444444444444432 44444444444444444444444444
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.53 E-value=8e-14 Score=119.53 Aligned_cols=115 Identities=15% Similarity=0.043 Sum_probs=105.2
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+..+...|+.++..|+|++|+..|++++.. +|.+..++.++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467889999999999999999999999999 77777999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 013800 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-NILAAYACFLWE 313 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 313 (436)
+++|.++.+|+.+|.++..+++ +++|+.+|++++.++|++. .+...+..+...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999985 9999999999999999998 666677754433
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.52 E-value=4.9e-14 Score=119.70 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=100.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC-------HPL-----LLRNYAQLLQKKGDLYRAEDYYNHATMA---- 261 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 261 (436)
+..+.+.|+.+...|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356788999999999999999999999999998 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 262 ---DPGDGESW----MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 262 ---~p~~~~~~----~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|++..+| +++|.++..+++ +++|+.+|+++++++|++..+...+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999 999999999986 99999999999999998766554444
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=1.1e-13 Score=113.00 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=87.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
..+...|++++|+..|+++++.+|+++.+|+.+|.++...|+ +++|+..|+++++++|++..++..+|.++...|++++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 788899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChh
Q 013800 411 DSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~ 427 (436)
|+..|+++++++|.+..
T Consensus 104 A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 104 ALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCcCCCC
Confidence 99999999999998753
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.52 E-value=1.6e-13 Score=117.72 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA------------------DPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
+..+..+|..++..|+|++|+..|.+++.+ +|.+..+|.++|.++..+++ +++|+.+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-LHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 467888899999999999999999999887 33334445555555444442 55555555555
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 013800 294 ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-EIMSQYAKLV 367 (436)
Q Consensus 294 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 367 (436)
++++|+++.+++.+| .++..+|++++|+..|+++++++|++. .+...++.+.
T Consensus 90 l~~~p~~~~a~~~~g----------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 90 LKREETNEKALFRRA----------------------KARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHH----------------------HHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 555555555444444 444444455555555555555554444 3333444333
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.51 E-value=5.2e-13 Score=106.45 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=106.6
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
..++ +++|+.+|+++++.+|++..++..++.+
T Consensus 84 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNR-FEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9875 9999999999999999999999988844
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.51 E-value=2.1e-14 Score=145.58 Aligned_cols=135 Identities=15% Similarity=0.063 Sum_probs=119.6
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.++..+|..+...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH--HHHcCCHHHHHHHHH---------
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP--IQSKGDLEGAEEYFS--------- 347 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~g~~~~A~~~~~--------- 347 (436)
+++ +++|+++|+++++++|++..++..++ .+ +..+|++++|++.++
T Consensus 87 ~g~-~~eA~~~~~~al~~~p~~~~~~~~l~----------------------~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 143 (477)
T 1wao_1 87 LGK-FRAALRDYETVVKVKPHDKDAKMKYQ----------------------ECNKIVKQKAFERAIAGDEHKRSVVDSL 143 (477)
T ss_dssp HTC-HHHHHHHHHHHHHHSTTCTTHHHHHH----------------------HHHHHHHHHHHCCC------CCSTTTCC
T ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHHHHHHHHHHhccccccchhHhhh
Confidence 985 99999999999999999999999988 44 667789999999998
Q ss_pred --HHHHhCCCC
Q 013800 348 --RAILANPGD 356 (436)
Q Consensus 348 --~al~~~p~~ 356 (436)
+++.++|..
T Consensus 144 ~~~al~~~~~~ 154 (477)
T 1wao_1 144 DIESMTIEDEY 154 (477)
T ss_dssp TTSSCCCCTTC
T ss_pred hhhhccccccc
Confidence 777776643
No 160
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.51 E-value=2.6e-14 Score=140.76 Aligned_cols=215 Identities=9% Similarity=-0.010 Sum_probs=99.9
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..|..+|..+.+.|++++|++.|.++ +++..+...+..+...|++++|+.+++.+.+..++ +.+...++.+|.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 458999999999999999999999774 46678899999999999999999999999986444 778888898988
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhC
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
+.++ +.++..+++. | +..+|..+|..+...|.+++|...+...-.- .++.++|++++|++.|+++
T Consensus 106 Klg~-l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA---- 174 (449)
T 1b89_A 106 KTNR-LAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA---- 174 (449)
T ss_dssp ---C-HHHHTTTTTC-----C-----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred HhCC-HHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc----
Confidence 8875 9998888853 4 3459999999999999999999999844211 8999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hh
Q 013800 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TA 432 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~a 432 (436)
.++.+|..+..++...|+ ++.|..+... +..+|+ -...+..+|.+.|++++|+.++++++.+++.+.+.-+ ++
T Consensus 175 -~~~~~Wk~v~~aCv~~~e-f~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~ 248 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKE-FRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 248 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTC-HHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHcCc-HHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 479999999999999999 9999877765 334444 4557888999999999999999999999988877555 44
Q ss_pred hhc
Q 013800 433 NVY 435 (436)
Q Consensus 433 n~y 435 (436)
.+|
T Consensus 249 il~ 251 (449)
T 1b89_A 249 ILY 251 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 161
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=2.2e-12 Score=135.45 Aligned_cols=214 Identities=11% Similarity=0.037 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE-DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
......|++++...|.++.+|+.+|..+...|+.++|+ ..|++|+...|.+...|..++.+....+ ++++|..+|+++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~-~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT-KIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 45678899999999999999999999999999999997 9999999999999999999998888876 499999999999
Q ss_pred HHhC-----------CC-----------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHc-C
Q 013800 294 ALAA-----------PQ-----------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSK-G 337 (436)
Q Consensus 294 l~~~-----------p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~-g 337 (436)
+..- |. ...+|..++.+....|+.+.|+.++.++++. .+.... +
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 9752 53 3568999999999999999999999988763 122233 4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHH
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
+++.|..+|+++++..|+++..|..++......|+ .+.|..+|++++...|+ ...+|..+..+....|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~-~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE-ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 58999999999999999999999999999999999 99999999999999883 567889999999999999999999
Q ss_pred HHHHHhhCCCChhHHh
Q 013800 415 SDQFQQVAPIRQGAVT 430 (436)
Q Consensus 415 ~~~al~l~p~~~~a~~ 430 (436)
++++.+..|+......
T Consensus 564 ~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 564 EKRFFEKFPEVNKLEE 579 (679)
T ss_dssp HHHHHHHSTTCCHHHH
T ss_pred HHHHHHhCCCCcHHHH
Confidence 9999999998655444
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.51 E-value=1.5e-13 Score=121.28 Aligned_cols=92 Identities=10% Similarity=0.076 Sum_probs=70.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCH----HHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA---NPGD----GEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADS----HVLAA 397 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p--~~~----~~~~~ 397 (436)
.++...|++++|+.++++++.+ .+++ ..++.++|.++..+|+ +++|+.++++++.+.+ .+. .++..
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 7777778888888888888776 3322 4568888888888888 8999999988886532 222 34678
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 398 YACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+|.++...|++++|+.++++++++..
T Consensus 153 la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 88888899999999999988887743
No 163
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.50 E-value=3.4e-13 Score=127.34 Aligned_cols=187 Identities=13% Similarity=0.042 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--GDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
|+..+++.++..+.....+..+|.++...|++++|+.++.+++..+| .+.+++..++.++..+++ .+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r-~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN-VSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 78889988887666777788999999999999999999999999987 889999999999999986 999999999999
Q ss_pred HhCCC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 013800 295 LAAPQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPG--DGEIMSQYAKL 366 (436)
Q Consensus 295 ~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 366 (436)
+.+|+ +..++..++.. ++....| ++++|...|+++....|+ ....+++ +
T Consensus 164 ~~~~d~~~~~d~~l~~Laea--------------------~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~ 220 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAES--------------------YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---L 220 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHH--------------------HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---H
T ss_pred hcCccccccchHHHHHHHHH--------------------HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---H
Confidence 99994 33344444422 3444445 999999999999888886 3344444 8
Q ss_pred HHHhcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 367 VWELHHDHDKALCYFERAVQA----------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 367 ~~~~g~d~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+.++|+ +++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+..|+++....
T Consensus 221 ~~~~g~-~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 221 HLQQRN-IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHTC-HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHcCC-HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 999999 99999999987776 58899999999999999997 899999999999999886544
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-13 Score=111.45 Aligned_cols=112 Identities=19% Similarity=0.118 Sum_probs=76.6
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
.....+..+|..+...|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+.+++++++.+|.++.+++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 455666677777777777777777777777777665 56666777777777777777777777777777666666677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++...++ +++|+.+|+++++++|++..++..++
T Consensus 106 a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 106 SQALEKLGR-LDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 766666653 66677677666666666666666555
No 165
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=2.2e-13 Score=120.33 Aligned_cols=157 Identities=14% Similarity=0.038 Sum_probs=127.1
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~d 282 (436)
+..|++++|++.++......+....++..+|.++...|++++|+.++++++.+ .+....++..+|.++...++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN- 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-
Confidence 45699999999665554433356789999999999999999999999999994 44457789999999999875
Q ss_pred HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC-
Q 013800 283 QHRALTYFERAALA---APQD----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP- 354 (436)
Q Consensus 283 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p- 354 (436)
+++|+.++++++++ .+++ ..++.++| .++...|++++|+.++++++.+.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVA----------------------TVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998 4433 45567777 888889999999999999997632
Q ss_pred -CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 355 -GD----GEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 355 -~~----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
.+ ..++.++|.++...|+ +++|+.++++++++..
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKN-LLEAQQHWLRARDIFA 178 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHH
Confidence 22 3456899999999999 9999999999998753
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.49 E-value=2.1e-13 Score=115.78 Aligned_cols=110 Identities=15% Similarity=0.047 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C-----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQ-------D-----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-------~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
.+..+|..++..++ |++|+..|+++++++|+ + ..+|.++| .++..
T Consensus 13 ~~~~~G~~l~~~g~-~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g----------------------~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGE-YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA----------------------EALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHH----------------------HHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHH----------------------HHHHH
Confidence 34444555555443 55555555555555555 3 33889999 88889
Q ss_pred cCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 336 KGDLEGAEEYFSRAILA-------NPGDGEIM----SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+|+|++|+.+|.++|++ +|++..+| +++|.++..+|+ +++|+..|+++++++|++..+...+..+
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999999 99999999 999999999999 9999999999999999877554444433
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.49 E-value=1.4e-14 Score=146.95 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+..+|.++...|++++|++.|+++++++|.+..++..+|.++..+++ +++|+.+|+++++++|++..+++++|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~lg--- 81 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA--- 81 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHH---
Confidence 45567788899999999999999999999999999999999999999985 99999999999999999999999999
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCHHHHHHHHH-------
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL--VWELHHDHDKALCYFE------- 382 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~d~~~A~~~~~------- 382 (436)
.++..+|++++|+..|+++++++|++..++..++.+ +...|+ +++|++.++
T Consensus 82 -------------------~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~-~~~A~~~~~~~~~~~~ 141 (477)
T 1wao_1 82 -------------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVD 141 (477)
T ss_dssp -------------------HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH-HCCC------CCSTTT
T ss_pred -------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhccccccchhHh
Confidence 888999999999999999999999999999999998 888899 999999999
Q ss_pred ----HHHHhCCCC
Q 013800 383 ----RAVQASPAD 391 (436)
Q Consensus 383 ----~al~~~p~~ 391 (436)
+++.+.|+.
T Consensus 142 ~~~~~al~~~~~~ 154 (477)
T 1wao_1 142 SLDIESMTIEDEY 154 (477)
T ss_dssp CCTTSSCCCCTTC
T ss_pred hhhhhhccccccc
Confidence 777777653
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.1e-13 Score=110.23 Aligned_cols=117 Identities=19% Similarity=0.091 Sum_probs=72.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
..|.+...++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...++ +++|+.+|+++++++|++..+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhCccCHHH
Confidence 355666677777777777777777777777777666665 5566666666555543 666666666666666666555
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
++.+| .++...|++++|+.+|+++++++|++..++..++.+
T Consensus 102 ~~~~a----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRS----------------------QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHH----------------------HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555 555555666666666666666666655555555544
No 169
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=2.4e-14 Score=138.71 Aligned_cols=159 Identities=13% Similarity=-0.040 Sum_probs=81.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..+..+..+..+|.+++..|++++|+..|++++.+.|.+.. +...+ ++.++...+. ..++++
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~-~~~~~~~~l~---------~~~~~n 235 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYG-KYQDMALAVK---------NPCHLN 235 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCH-HHHHHHHHHH---------THHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcc-cHHHHHHHHH---------HHHHHH
Confidence 33444566778888888888888888888888887776541 11111 2344433322 135667
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
+| .++..+|+|++|+.+|+++++++|++..+|+++|.++..+|+ +++|+..|+++++
T Consensus 236 la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~ 292 (338)
T 2if4_A 236 IA----------------------ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQK 292 (338)
T ss_dssp HH----------------------HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC
T ss_pred HH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 77 677777777777777777777777777777777777777777 7777777777777
Q ss_pred hCCCCHHHHHHHHHH-HHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 387 ASPADSHVLAAYACF-LWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 387 ~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
++|++..++..++.+ ....+..+++...|++++...|...
T Consensus 293 l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 777777777777776 3445566677777777777776654
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.46 E-value=7.7e-14 Score=135.07 Aligned_cols=138 Identities=18% Similarity=0.076 Sum_probs=91.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----------------LLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+..+..+|+.++..|++++|+.+|++++...|++. .+++++|.+|..+|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999876 4899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH-HHHcCCH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP-IQSKGDL 339 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~g~~ 339 (436)
++|++..+|+++|.++..+++ +++|+.+|+++++++|++..++..++ .+ ....+..
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~----------------------~l~~~~~~~~ 315 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELR----------------------ALAEQEKALY 315 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC---------------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHH----------------------HHHHHHHHHH
Confidence 999999999999999999875 99999999999999999999999888 44 3355778
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 013800 340 EGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~ 358 (436)
+++...|.+++...|.++.
T Consensus 316 ~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHhhCCCCCCCC
Confidence 8888999999999887653
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=2e-12 Score=105.52 Aligned_cols=112 Identities=11% Similarity=0.076 Sum_probs=103.6
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 272 (436)
.++..+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+.+|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
|.++...++ +++|+..|+++++..|++..+...+..+.
T Consensus 83 a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGK-NTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999875 99999999999999999998877666433
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.46 E-value=5.7e-13 Score=105.28 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 013800 297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK 376 (436)
Q Consensus 297 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~ 376 (436)
+|++..++..+| .++...|++++|+.+|+++++.+|.+..++..+|.++...|+ +++
T Consensus 2 ~p~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~ 58 (112)
T 2kck_A 2 VDQNPEEYYLEG----------------------VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER-YEE 58 (112)
T ss_dssp CCSSTTGGGGHH----------------------HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHH
T ss_pred CCCcHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-HHH
Confidence 678888888899 888999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCCC
Q 013800 377 ALCYFERAVQASPA--DSHVLAAYACFLWET-EEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 377 A~~~~~~al~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~p~~ 425 (436)
|+..|+++++..|. +..++..+|.++..+ |++++|++++++++...|..
T Consensus 59 A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 59 AVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999999999 999999999999999 99999999999999998865
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.45 E-value=1.3e-12 Score=106.23 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-------SNI 303 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-------~~~ 303 (436)
.+..+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...++ +++|+.+|++++...|.+ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 457788999999999999999999999999999999999999999888875 999999999999998876 778
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
+..+| .++...|++++|+.+|+++++..| ++..+..++.+....++
T Consensus 82 ~~~la----------------------~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIG----------------------NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 88888 888889999999999999999998 58888888887766543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.44 E-value=3.4e-12 Score=104.22 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=32.8
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~l 398 (436)
.++...|++++|+..|++++..+|++ +.+++.+|.++..+|+ +++|+..|++++...|++..+...+
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 47 ESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK-NTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 44444445555555555555555544 4445555555555554 5555555555555555444443333
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.44 E-value=3.7e-13 Score=114.02 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=90.7
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL----------YRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.+.+.|++|+..|+++++++|+++++|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999998875 599999999999999999999999999998
Q ss_pred Hc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 279 LH----------RDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 279 ~~----------~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++ +++++|+.+|++|++++|++...+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 75 3599999999999999999976665544
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=1.7e-12 Score=105.51 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 265 ~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
.+..+..+|.++...+. +++|+.+|++++..+|.+..++..+| .++...|++++|+.
T Consensus 3 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la----------------------~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 3 QALKEKELGNDAYKKKD-FDTALKHYDKAKELDPTNMTYITNQA----------------------AVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHhccHHHHHH
Confidence 45788999999988874 99999999999999999999999999 88889999999999
Q ss_pred HHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 345 YFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 345 ~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
+|++++...|.+ ..+++.+|.++...|+ +++|+..|+++++..| +..++..++.+...++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK-YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 999999998877 8999999999999999 9999999999999999 5888888888766544
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.43 E-value=1.9e-12 Score=102.18 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=98.3
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DGESWMQYA 273 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 273 (436)
.....|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|. +..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 013800 274 KLVWEL-HRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 274 ~~~~~~-~~d~~~A~~~~~~al~~~p~~ 300 (436)
.++... ++ +++|+.++++++...|.+
T Consensus 84 ~~~~~~~~~-~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGK-EVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSC-SHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCC-HHHHHHHHHHHhhcccCC
Confidence 999888 85 999999999999999875
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.42 E-value=2e-12 Score=126.70 Aligned_cols=140 Identities=18% Similarity=0.132 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+..+|..++..|++++|+..|++++++.+..+ +....++...++|.+..++.++|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~nla--- 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------AAAEDADGAKLQPVALSCVLNIG--- 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------------------HHSCHHHHGGGHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-------------------cccChHHHHHHHHHHHHHHHHHH---
Confidence 45688899999999999999999999988533211 01112333345555666677777
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.++..+|++++|+.+|+++++++|+++.+++.+|.++..+|+ +++|+..|+++++++|++
T Consensus 281 -------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 281 -------------------ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPED 340 (370)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred -------------------HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCC
Confidence 666677777777777777777777777777777777777777 777777777777777777
Q ss_pred HHHHHHHHHHHHHCCChHHHHH
Q 013800 392 SHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~ 413 (436)
..++..++.++..+++++++.+
T Consensus 341 ~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 341 KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666644
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.4e-12 Score=127.62 Aligned_cols=201 Identities=11% Similarity=0.012 Sum_probs=163.8
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----------------LLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+.+....+..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556667778888999999999999999888642 3688999999999999999999999998
Q ss_pred hCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 261 ADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 261 ~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
..+... .+...++.++...+ ++++|+.++++++...+. ...++..+|
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la-------------------- 142 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA-------------------- 142 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH--------------------
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH--------------------
Confidence 765532 23445666655554 599999999999886432 356777888
Q ss_pred HHhHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CC----HHHH
Q 013800 329 QVLPIQSKGDLEGAEEYFSRAILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP---AD----SHVL 395 (436)
Q Consensus 329 ~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p---~~----~~~~ 395 (436)
.++...|+|++|+.++++++.. .+....++..++.++..+|+ +++|..++++++.+.+ .. ..++
T Consensus 143 --~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 143 --TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp --HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred --HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 8889999999999999999876 23446799999999999999 9999999999987642 22 2567
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
..+|.++...|++++|..+|.+++...
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 788899999999999999999998753
No 180
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=1.4e-12 Score=110.48 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=81.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR---------DQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
.+.+.+++|+..++++++++|+++.+|.++|.++...++ .+++|+..|+++++++|++..+|+++|.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 356779999999999999999999999999999998864 13599999999999999999999999955544
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.|...- ......|++++|+.+|++|++++|++..
T Consensus 93 lg~l~P-----------~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 93 FAFLTP-----------DETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCc-----------chhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 321000 0011125788888888888888887653
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.40 E-value=1.9e-12 Score=126.77 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
..+..+|..++..++ |++|+.+|++++++.+... +....
T Consensus 224 ~~~~~~g~~~~~~g~-~~~Ai~~y~kAl~~~~~~~----------------------------------------~~~~~ 262 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSR----------------------------------------AAAED 262 (370)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH----------------------------------------HHSCH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCc----------------------------------------cccCh
Confidence 457788989888875 9999999999998643211 11123
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 347 SRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
..+...+|.+..+|+++|.++..+|+ +++|+.+|+++++++|++..+++.+|.++..+|++++|+..|++++++.|...
T Consensus 263 ~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 263 ADGAKLQPVALSCVLNIGACKLKMSD-WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 44455677788999999999999999 99999999999999999999999999999999999999999999999999877
Q ss_pred hHHh
Q 013800 427 GAVT 430 (436)
Q Consensus 427 ~a~~ 430 (436)
....
T Consensus 342 ~~~~ 345 (370)
T 1ihg_A 342 AIQA 345 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=6.9e-13 Score=107.27 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=87.0
Q ss_pred hCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDE---YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
..|++++|+.+|+++++. +|++..++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...++ +++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-YEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-HHHH
Confidence 358899999999999999 588889999999999999999999999999999999999999999999999985 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHH
Q 013800 287 LTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la 308 (436)
+.+|++++...|+++.+.....
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999988765444
No 183
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.39 E-value=2.3e-11 Score=132.83 Aligned_cols=207 Identities=11% Similarity=0.008 Sum_probs=154.2
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---------------------------HHHHHHHHHHHHHcCCH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---------------------------PLLLRNYAQLLQKKGDL 248 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------------------~~~~~~la~~~~~~g~~ 248 (436)
++...|..+|.++.+.|++++|+++|..+.+..++. ...+..+|..+...|+|
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence 445789999999999999999999999988766431 22345566666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH-
Q 013800 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH- 327 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~- 327 (436)
++|+.+|.++ ..|..+|.++.++++ +++|++++++| .+..+|...+.++.+.|++..|.......
T Consensus 1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge-~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A 1212 DAAKLLYNNV--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 1277 (1630)
T ss_pred HHHHHHHHhh--------hHHHHHHHHHHHhCC-HHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 7776666664 366666767666654 77777777766 45566776666666666666666655321
Q ss_pred -----HHH--hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC-----CCHH
Q 013800 328 -----IQV--LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP-----ADSH 393 (436)
Q Consensus 328 -----~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~d~~~A~~~~~~al~~~p-----~~~~ 393 (436)
+.. ..|...|.|++|+.++++++.+++.+...+..+|.++.+ -++ ..+++++|...+.+.| .+..
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek-lmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH-HHHHHHHHHHhcccchHhHHHHHHH
Confidence 111 678899999999999999999999999999888888765 345 7788888888887776 6778
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHH
Q 013800 394 VLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
.|..+..+|.+-|+++.|+.....
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHh
Confidence 899999999999999999854443
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.36 E-value=1.2e-12 Score=105.86 Aligned_cols=98 Identities=13% Similarity=0.262 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 282 DQHRALTYFERAALA---APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 282 d~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++++|+.+|++++++ +|++..++..+| .++..+|++++|+.+|+++++++|+++.
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~ 62 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLG----------------------STFRTLGEYRKAEAVLANGVKQFPNHQA 62 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 588999999999998 588888999999 8888999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
+++++|.++..+|+ +++|+..|++++...|+++.+......+.
T Consensus 63 ~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 63 LRVFYAMVLYNLGR-YEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999 99999999999999999887654443333
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.36 E-value=7e-12 Score=105.38 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------ 300 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------ 300 (436)
.++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...++ +++|+.++++++++.+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCcHHH
Confidence 455666666666666666666666666553321 1345555555555543 555555555555543221
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~ 374 (436)
..++..+| .++...|++++|+.++++++++.+. ...++..+|.++...|+ +
T Consensus 89 ~~~~~~l~----------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~ 145 (164)
T 3ro3_A 89 AQSCYSLG----------------------NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-H 145 (164)
T ss_dssp HHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-H
T ss_pred HHHHHHHH----------------------HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-H
Confidence 23334444 5555556666666666665554211 13455556666666666 6
Q ss_pred HHHHHHHHHHHHhC
Q 013800 375 DKALCYFERAVQAS 388 (436)
Q Consensus 375 ~~A~~~~~~al~~~ 388 (436)
++|+.++++++++.
T Consensus 146 ~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 146 DQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.34 E-value=8.8e-12 Score=104.79 Aligned_cols=135 Identities=12% Similarity=0.118 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~ 339 (436)
..++..+|.+++..++ +++|+.++++++++.+... .++..+| .++...|++
T Consensus 9 ~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~ 65 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLG----------------------NAYIFLGEF 65 (164)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------HHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH----------------------HHHHHcCCH
Confidence 4578889999988875 9999999999999865422 3566677 888899999
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCC
Q 013800 340 EGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA------DSHVLAAYACFLWETEE 407 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~ 407 (436)
++|+.++++++++.+.. ..++.++|.++...|+ +++|+.++++++.+.+. ...++..+|.++...|+
T Consensus 66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 99999999999876543 6689999999999999 99999999999987432 24678999999999999
Q ss_pred hHHHHHHHHHHHhhCCC
Q 013800 408 DEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 408 ~~~A~~~~~~al~l~p~ 424 (436)
+++|++++++++++...
T Consensus 145 ~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 145 HDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987544
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.33 E-value=3.9e-13 Score=132.40 Aligned_cols=217 Identities=13% Similarity=0.053 Sum_probs=130.3
Q ss_pred CCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 179 PVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
.+++..|+..+....+ .+.....++.++.+.|++.+++++++. | +..+|..+|..+...|+|++|..+|.++
T Consensus 77 ~EeAi~yl~~ark~~~--~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 77 WEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCc--cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3355555655554321 234455566677777777777766642 4 3347778888888888888888888766
Q ss_pred HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH-------HHH-
Q 013800 259 TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH-------IQV- 330 (436)
Q Consensus 259 l~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~- 330 (436)
..|..+|.++..+++ |++|++.++++ .++.+|...+.++...|+++.|....... ...
T Consensus 149 --------~n~~~LA~~L~~Lg~-yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv 214 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELI 214 (449)
T ss_dssp --------TCHHHHHHHHHTTTC-HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHH
T ss_pred --------hhHHHHHHHHHHhcc-HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHH
Confidence 467777888777764 88888888877 46777888878888888777775433311 000
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP-----ADSHVLAAYACFLW 403 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~d~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~ 403 (436)
.+|.+.|++++|+.++++++.+++.+..++..+|.++.+ .++ ..+.++.|...+.+.| .+...|..+..+|.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k-~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999998864 445 6677777777777777 77789999999999
Q ss_pred HCCChHHHHHHHHHH
Q 013800 404 ETEEDEDDSKSSDQF 418 (436)
Q Consensus 404 ~~g~~~~A~~~~~~a 418 (436)
+.++++.|+....+.
T Consensus 294 ~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 294 KYEEYDNAIITMMNH 308 (449)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred hhchHHHHHHHHHhC
Confidence 999999998765443
No 188
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=6.5e-11 Score=111.71 Aligned_cols=187 Identities=11% Similarity=-0.008 Sum_probs=149.8
Q ss_pred hHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 182 PPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+..++..-+.... .....+..+|.++...|++++|++++.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQ-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455665554443 3455667899999999999999999999999987 788999999999999999999999999999
Q ss_pred HhCCC----CHHHHHHH--HHHHHHHc-CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013800 260 MADPG----DGESWMQY--AKLVWELH-RDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 260 ~~~p~----~~~~~~~l--a~~~~~~~-~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
+.+|+ +-.++..+ |.+....+ +++.+|...|+++.+..|+ ....++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl------------------------- 218 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL------------------------- 218 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH-------------------------
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH-------------------------
Confidence 99993 23333444 44455554 2599999999999888886 223333
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA----------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
.++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+.+|+++.+...
T Consensus 219 n~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 219 NLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL---DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh---HHHHHHHHHHHhCCCChHHHHH
Confidence 3456789999999999987776 58899999999999999987 7899999999999999876543
No 189
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.22 E-value=4.9e-10 Score=117.62 Aligned_cols=208 Identities=9% Similarity=-0.028 Sum_probs=181.5
Q ss_pred HHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAE-EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...|.+++...+ ..+..|+..+......|+.++|. ..|++++...|.+...|+.++.+....|++++|...|++++..
T Consensus 329 ~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 329 TYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356888888888 68999999999999999999997 9999999999999999999999999999999999999999975
Q ss_pred -----------CCC-----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccC-c
Q 013800 262 -----------DPG-----------DGESWMQYAKLVWELHRDQHRALTYFERAALA-APQDSNILAAYACFLWEMED-D 317 (436)
Q Consensus 262 -----------~p~-----------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~ 317 (436)
.|. ...+|..++.+....++ .+.|...|.+|++. .+....+|...+.+....++ .
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 253 35689999988888876 99999999999998 55567788888888877765 8
Q ss_pred hHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013800 318 GEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANP---GDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 318 ~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~d~~~A~~~~~ 382 (436)
+.|..+++..++. ......|+.+.|..+|++++...| ....+|..+...-...|+ .+.+...++
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~-~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS-LNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 9999999988887 444567999999999999999988 356788888888889999 999999999
Q ss_pred HHHHhCCCCHH
Q 013800 383 RAVQASPADSH 393 (436)
Q Consensus 383 ~al~~~p~~~~ 393 (436)
++.+..|++..
T Consensus 566 R~~~~~P~~~~ 576 (679)
T 4e6h_A 566 RFFEKFPEVNK 576 (679)
T ss_dssp HHHHHSTTCCH
T ss_pred HHHHhCCCCcH
Confidence 99999998753
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.21 E-value=1.2e-10 Score=93.28 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
+|+..|+++++.+|+++.+++.+| .++...|++++|+.+|+++++++|++..+|+.+|
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 60 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLG----------------------KTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 578899999999999999999999 8888899999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHC
Q 013800 365 KLVWELHHDHDKALCYFERAVQASPA--DSHVLAAYACFLWET 405 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 405 (436)
.++...|+ +++|+..|++++++.|. +......+...+..+
T Consensus 61 ~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 61 KTLQGQGD-RAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence 99999999 99999999999998874 345555555544443
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.19 E-value=2.9e-10 Score=91.12 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 216 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
+|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|.+..+|+.+|.++...++ +++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999875 9999999999999
Q ss_pred hCCC--CHHHHHHHHH
Q 013800 296 AAPQ--DSNILAAYAC 309 (436)
Q Consensus 296 ~~p~--~~~~~~~la~ 309 (436)
+.|. +......+..
T Consensus 82 ~~~~~~~~~~~~~l~~ 97 (115)
T 2kat_A 82 AAQSRGDQQVVKELQV 97 (115)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred hccccccHHHHHHHHH
Confidence 9874 4455555543
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.9e-11 Score=95.69 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=81.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 404 (436)
.++...|++++|+..|+++++++|.++.+++++|.++..+|+ +++|+..|+++++++|++ ..++..++.++..
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999 999999999999999999 8899999999999
Q ss_pred CCChHHHHHHHHH
Q 013800 405 TEEDEDDSKSSDQ 417 (436)
Q Consensus 405 ~g~~~~A~~~~~~ 417 (436)
+|++++|+..+++
T Consensus 91 ~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 91 VGSVQIPVVEVDE 103 (111)
T ss_dssp HHCCCCCSSSSSS
T ss_pred HHhHhhhHhHHHH
Confidence 9998888766553
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.16 E-value=6e-10 Score=110.28 Aligned_cols=168 Identities=11% Similarity=0.016 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-----------------ESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
......|..+...|+|++|++.|.++++..|... .++..+|.+|...++ +++|+.++++++.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-KDKLREFIPHSTE 83 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 4566788889999999999999999999988642 468899999999985 9999999999998
Q ss_pred hCCCCHHH------HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 013800 296 AAPQDSNI------LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQY 363 (436)
Q Consensus 296 ~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l 363 (436)
..+..... ...++ .++...|++++|+.++++++...+ ....++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIE----------------------KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHH----------------------HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHH----------------------HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 87654322 23344 666778999999999999987632 336789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 364 AKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 364 a~~~~~~g~d~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
|.++...|+ |.+|+..+++++... +....++..++.++..+|++++|..+|++++.+.+.
T Consensus 142 a~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 142 ATLHYQKKQ-YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccC-hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 999999999 999999999998752 334578999999999999999999999999987543
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.2e-11 Score=95.39 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=66.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 271 (436)
...|..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34567777777777777777777777777777777777777777777777777777777777777777 667777
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 013800 272 YAKLVWELHRDQHRALTYF 290 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~ 290 (436)
+|.++...+. +++|+..+
T Consensus 84 ~~~~~~~~~~-~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGS-VQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHC-CCCCSSSS
T ss_pred HHHHHHHHHh-HhhhHhHH
Confidence 7777666653 55554443
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.14 E-value=4.8e-10 Score=85.12 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
.+++.+|.++...|++++|+.+|+++++.+|.++.++..+|.++...++ +++|+.+|+++++++|++..++..++.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4444444444455555555555555555555444445555544444432 555555555555555555555544444443
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.14 E-value=5.4e-10 Score=84.83 Aligned_cols=75 Identities=17% Similarity=0.331 Sum_probs=71.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
.++...|++++|+.+|+++++.+|+++.++..+|.++...|+ +++|+..|+++++++|.+..++..++.++..+|
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999999999 999999999999999999999999999987754
No 197
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.08 E-value=2.6e-09 Score=98.64 Aligned_cols=183 Identities=15% Similarity=0.061 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHcC--------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLL-------QKKG--------------DLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~-------~~~g--------------~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
.-.+.+++-.+..+|++...+...|..| .+.. ++..|...|.++... -..|
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 4567788888999999986655544444 3221 234555555555331 1112
Q ss_pred HHHHHHcCCHHHHHH-----HHHHH-HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH------HcCCHHH
Q 013800 274 KLVWELHRDQHRALT-----YFERA-ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ------SKGDLEG 341 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~-----~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~g~~~~ 341 (436)
.+ ....+ +.+++. -+.++ .+.+|+++++++..|..... ++-. ..+...+
T Consensus 121 L~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss-----------------~a~~~~gg~~Al~~l~~ 181 (301)
T 3u64_A 121 LE-TAYPG-FTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVA-----------------AFALTPLGSALPDTVHA 181 (301)
T ss_dssp HH-HHSTT-HHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHH-----------------HHTTSCTTSCCHHHHHH
T ss_pred HH-HhCcc-HHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHH-----------------HHhcCCCChHHHHhHHH
Confidence 11 11122 443333 22333 34578889988888755533 1111 1234578
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHC-CChHHHH
Q 013800 342 AEEYFSRAILANPG--DGEIMSQYAKLVWEL-----HHDHDKALCYFERAVQASPAD-SHVLAAYACFLWET-EEDEDDS 412 (436)
Q Consensus 342 A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~~~~A~ 412 (436)
|...++++++++|+ +..+|..+|.+|... |+ .++|.++|++|++++|+. ..+++.+|..+... |++++|.
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd-~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG-MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC-HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999 677999999999985 77 999999999999999975 99999999999884 9999999
Q ss_pred HHHHHHHhhCCCC
Q 013800 413 KSSDQFQQVAPIR 425 (436)
Q Consensus 413 ~~~~~al~l~p~~ 425 (436)
++++++++.+|..
T Consensus 261 ~~L~kAL~a~p~~ 273 (301)
T 3u64_A 261 EALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCGGG
T ss_pred HHHHHHHcCCCCC
Confidence 9999999998874
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.04 E-value=4e-10 Score=87.47 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=80.1
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.+..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+.+|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356788889999999999999999999999999 99999999999999999999999999999999887744
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 013800 280 HRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~ 300 (436)
+ .+.+++.+|++++..+|++
T Consensus 75 ~-~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 K-MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp H-HHHHHHHHHCCTTHHHHCC
T ss_pred H-HHHHHHHHHHHHhccCccc
Confidence 2 2788888998888887765
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.02 E-value=1.6e-09 Score=84.82 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=60.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNIL 304 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~ 304 (436)
.+|+++.+++.+|.++...|++++|+.+|+++++++|+++.+|+.+|.++...++ +++|+..|++++++.|. +....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchhHH
Confidence 3677888888888888888888888888888888888888888888888877764 88888888888877653 34444
Q ss_pred HHHHH
Q 013800 305 AAYAC 309 (436)
Q Consensus 305 ~~la~ 309 (436)
..+..
T Consensus 81 ~~l~~ 85 (100)
T 3ma5_A 81 SELQD 85 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.01 E-value=6.6e-09 Score=86.54 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
++++|+.+|+++.+.....+. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 444555555555544322222 444444444444444444444443 34444444444443
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=2.1e-09 Score=84.07 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=68.0
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 013800 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~ 375 (436)
.+|+++.+++.+| .++...|++++|+.+|+++++++|+++.+|+.+|.++..+|+ ++
T Consensus 2 ~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~ 58 (100)
T 3ma5_A 2 EDPEDPFTRYALA----------------------QEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TD 58 (100)
T ss_dssp ---CCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HH
T ss_pred CCccCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HH
Confidence 3688888888888 888888899999999999999999988899999999999988 89
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCC
Q 013800 376 KALCYFERAVQASPA--DSHVLAAYACFLWETE 406 (436)
Q Consensus 376 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 406 (436)
+|+..|++++++.|. +......+..++...+
T Consensus 59 ~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 59 DAIDTYAQGIEVAREEGTQKDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHcc
Confidence 999999998887653 3444455555554433
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.99 E-value=1.1e-08 Score=85.22 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
+++++|+.+|+++.+....... +|.+|....+ +++|+.+|+++.+. .++.+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~-~~~A~~~~~~Aa~~--g~~~a~~~Lg----------------- 64 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQIN-KQKLFQYLSKACEL--NSGNGCRFLG----------------- 64 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSC-HHHHHHHHHHHHHT--TCHHHHHHHH-----------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCC-HHHHHHHHHHHHcC--CCHHHHHHHH-----------------
Confidence 4678999999999988754444 8877766654 88899999999887 7889999999
Q ss_pred HHHHHhHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 326 EHIQVLPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 326 ~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
.+|.. .+++++|+.+|+++.+. .++.++++||.+|.. .++ +++|+.+|+++.+.. ++.+...
T Consensus 65 -----~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g--~~~A~~~ 134 (138)
T 1klx_A 65 -----DFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN-EKQAVKTFEKACRLG--SEDACGI 134 (138)
T ss_dssp -----HHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHH
T ss_pred -----HHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHHCC--CHHHHHH
Confidence 77777 78999999999999876 678999999999988 667 999999999998874 4566665
Q ss_pred HHH
Q 013800 398 YAC 400 (436)
Q Consensus 398 la~ 400 (436)
++.
T Consensus 135 l~~ 137 (138)
T 1klx_A 135 LNN 137 (138)
T ss_dssp C--
T ss_pred Hhh
Confidence 543
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.97 E-value=1.2e-09 Score=84.81 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=78.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGE-IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
..+...|++++|+..|+++++.+|+++. +++.+|.++..+|+ +++|+..|+++++++|++..++.. +.+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~--------~~~~ 78 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQAR--------KMVM 78 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHHH--------HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHH--------HHHH
Confidence 7788899999999999999999999999 99999999999999 999999999999999999888744 4567
Q ss_pred HHHHHHHHHHhhCCCCh
Q 013800 410 DDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 410 ~A~~~~~~al~l~p~~~ 426 (436)
+++..|+++...+|...
T Consensus 79 ~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 79 DILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHhccCcccc
Confidence 88888888888776654
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.95 E-value=4.4e-08 Score=94.08 Aligned_cols=147 Identities=18% Similarity=0.072 Sum_probs=94.5
Q ss_pred HHHHHhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----C--HHHHH-HH
Q 013800 222 KRMIDEYPCHPLLL--RNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR----D--QHRAL-TY 289 (436)
Q Consensus 222 ~~al~~~P~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----d--~~~A~-~~ 289 (436)
+++....|.+..+| +..|..+...++ ..+|+.+|++|++++|+++.++..++.++..... . ...++ ..
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 34455567665443 455666655444 4788888888888888888888877777653221 0 00111 11
Q ss_pred HHH--HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 290 FER--AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 290 ~~~--al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
++. ++..+|.++.++..++ ..+...|++++|+..+++|+.++|. ..+|..+|.++
T Consensus 264 ~~a~~a~~~~~~~a~~~~ala----------------------l~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~ 320 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKA----------------------VSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVY 320 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred HHHHHhcccCCcCHHHHHHHH----------------------HHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 111 2244577777777776 5555567777777777777777764 66667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 368 WELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
...|+ +++|++.|.+|+.++|...
T Consensus 321 ~~~G~-~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 321 EMKGM-NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHTTC-HHHHHHHHHHHHHHSCSHH
T ss_pred HHCCC-HHHHHHHHHHHHhcCCCcC
Confidence 77777 7777777777777777654
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.93 E-value=4.2e-09 Score=106.49 Aligned_cols=129 Identities=10% Similarity=0.063 Sum_probs=105.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWMQYAKLVWELHRDQHRALTYFERAALA-----APQDSN 302 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~ 302 (436)
...+..+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+ |++|+.++++++++ .|+++.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA-YEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 34555677899999999999999986 4444 4678899999999875 99999999999986 355554
Q ss_pred ---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhc
Q 013800 303 ---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELH 371 (436)
Q Consensus 303 ---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g 371 (436)
.+.+|| .+|..+|++++|+.+|++|+++ .|++ .++..+++.++..++
T Consensus 392 ~a~~l~nLa----------------------~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 392 LGMAVMRAG----------------------LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 456777 8889999999999999999986 4555 456678999999999
Q ss_pred CCHHHHHHHHHHHHHhC
Q 013800 372 HDHDKALCYFERAVQAS 388 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~ 388 (436)
. +++|...|.++.+..
T Consensus 450 ~-~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 450 M-FRQNEFMYHKMREAA 465 (490)
T ss_dssp H-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 9 999999999987654
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.92 E-value=4.7e-08 Score=93.88 Aligned_cols=149 Identities=9% Similarity=-0.071 Sum_probs=111.1
Q ss_pred HHHHhCCCCHHHHH--HHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013800 257 HATMADPGDGESWM--QYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 257 ~al~~~p~~~~~~~--~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
++...-|.++.+|- ..|..++... .++.+|+.+|++|++++|+++.++..++.++...
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~------------------ 246 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR------------------ 246 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------------
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------------------
Confidence 34445566655443 3444444332 2368999999999999999999999888666421
Q ss_pred HHHcC-----C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 333 IQSKG-----D---LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 333 ~~~~g-----~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
...+ . ...|... ..++..+|.++.++..++.++...|+ +++|+..+++|+.++|. ..++..+|.++..
T Consensus 247 -~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 247 -HSQHPLDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGK-TDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp -HHHSCCCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred -hccCCCchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 1111 0 1122221 12335679999999999999998999 99999999999999975 7788899999999
Q ss_pred CCChHHHHHHHHHHHhhCCCChh
Q 013800 405 TEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 405 ~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.|++++|++.|.+|+.++|....
T Consensus 323 ~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999999998753
No 207
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=2e-07 Score=94.50 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
.+.....|++++...|..+.+|+.++..+...|+.++|...|++|+.. |.+...|..++... +. ++. ++++
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~----~~~---~~~l 265 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DE----EAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TC----THH---HHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-ch----hHH---HHHH
Confidence 345678999999999999999999999999999999999999999999 99887777665431 11 111 2222
Q ss_pred HHh-------------CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHc-CCHHHHHHHHH
Q 013800 294 ALA-------------APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSK-GDLEGAEEYFS 347 (436)
Q Consensus 294 l~~-------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~-g~~~~A~~~~~ 347 (436)
.+. .+....+|..++.++...++.+.|+.++.++ +. .+.... ++.+.|...|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 211 0112366788888887788888888888766 31 222223 36999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
.+++..|+.+..|..++......|+ .+.|...|+++ +.....|..+..+....|+.+.+.+++++++.
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~-~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGD-EENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999988888888888888 99999999987 45678888888888889999999898888875
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.87 E-value=8.2e-09 Score=104.32 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=101.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAA-----PQDSN---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~-----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.+..+| +|++|+.+|++++++. |+++. ++.++| .+|..+|+|++|+.++
T Consensus 318 ~~~~qg-~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa----------------------~~y~~~g~~~eA~~~~ 374 (490)
T 3n71_A 318 KARSEG-LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIAS----------------------EVLSYLQAYEEASHYA 374 (490)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----------------------HHHHHhcCHHHHHHHH
Confidence 334455 5999999999999873 55554 456777 8889999999999999
Q ss_pred HHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCChHH
Q 013800 347 SRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HVLAAYACFLWETEEDED 410 (436)
Q Consensus 347 ~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~ 410 (436)
++++++ .|++ ...+++||.+|..+|+ +++|+.+|++|+++ .|+++ +...+++.++..++.+++
T Consensus 375 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 375 RRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 3444 5678999999999999 99999999999975 57776 456788999999999999
Q ss_pred HHHHHHHHHhh
Q 013800 411 DSKSSDQFQQV 421 (436)
Q Consensus 411 A~~~~~~al~l 421 (436)
|...|.++.+.
T Consensus 454 ae~~~~~~~~~ 464 (490)
T 3n71_A 454 NEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 209
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=1.1e-06 Score=89.10 Aligned_cols=201 Identities=12% Similarity=0.057 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 212 DDSAEAEEYYKRMIDEYPC-HPLLLRNYAQLLQKK--GD-----LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
..+..|...|+.+....+. ....|..+...-... +- .......|++++...|..+.+|..++..+...+ +.
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~-~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG-QK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CH
Confidence 3455566666666654333 344665555543321 11 456788999999999999999999999887765 59
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-chH--------------------HHHHHHHHHHHhHHHHcCCHHHH
Q 013800 284 HRALTYFERAALAAPQDSNILAAYACFLWEMED-DGE--------------------DDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~--------------------A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
++|...|++++.. |.+...|+.++... +.+. ++. ...++..++ ....+.+..+.|
T Consensus 230 ~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~--~~~~r~~~~~~A 305 (493)
T 2uy1_A 230 EKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL--NYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHHHHHHHHHTC----------CHHHHHHHHHHHH--HHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH--HHHHHcCCHHHH
Confidence 9999999999999 99988887766541 0000 000 001111111 444456789999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
...|.+| ...+....+|...|.+.+..++|.+.|...|+.+++..|+.+..+..++..+...|+.+.|..+|+++
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999 44334667888888888877755999999999999999999999999999999999999999998886
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.68 E-value=2.7e-07 Score=85.16 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=92.3
Q ss_pred HhCCCCHHHHHHHHHHHHHH----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHH
Q 013800 260 MADPGDGESWMQYAKLVWEL----HR------DQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEH 327 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~----~~------d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 327 (436)
+.+|++++.++..|.+.... .+ ...+|...++++++++|+ +..+|..+|
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG------------------- 206 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLT------------------- 206 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH-------------------
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHH-------------------
Confidence 45788888888887766441 12 247899999999999999 677999999
Q ss_pred HHHhHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCC
Q 013800 328 IQVLPIQSK-----GDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWEL-HHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 328 ~~~~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~d~~~A~~~~~~al~~~p~ 390 (436)
.+|... |+.++|.++|++|++++|+. ..+++.+|..++.. |+ +++|..++++++...|.
T Consensus 207 ---~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 207 ---KFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-RAGFDEALDRALAIDPE 272 (301)
T ss_dssp ---HHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-HHHHHHHHHHHHHCCGG
T ss_pred ---HHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCC
Confidence 777774 99999999999999999975 99999999999885 77 99999999999998876
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=3.9e-07 Score=76.23 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhC-C-CCH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILAN-P-GDG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~ 357 (436)
...+.+.|.+.++.++.+.++.+++| +++.+.+ +.++++.+++..++.+ | ++.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya----------------------~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r 71 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYA----------------------WCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR 71 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHH----------------------HHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCCccchH
Confidence 56677888888888889999999999 7777766 6779999999999988 7 568
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.++++|..++++|+ |++|+++++++++++|++..+....-.+
T Consensus 72 d~lY~LAv~~~kl~~-Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 899999999999999 9999999999999999988776655444
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.62 E-value=2.7e-07 Score=71.06 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 353 NPGDGEIMSQYAKLVWELHHD--HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~d--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
+|++++++..+|.+++..++. .++|...++++++++|+++.++..+|..+++.|++++|+.+++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 689999999999999876552 589999999999999999999999999999999999999999999999988
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.58 E-value=2.9e-07 Score=70.95 Aligned_cols=71 Identities=11% Similarity=-0.048 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 228 YPCHPLLLRNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
+|+++.++..+|.+++..++ .++|..+++++++++|+++.+++.+|.+++..++ |++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~-y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR-FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence 57777888888888776555 6788888888888888888888888888777764 88888888888888777
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=4.9e-07 Score=75.59 Aligned_cols=93 Identities=17% Similarity=0.091 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCChHHHH
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH---HDHDKALCYFERAVQAS-P-ADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~d~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 412 (436)
....+.+.|.+.+..++.+.++.+++|+++.+.. + .++++.+|+..+..+ | ++.++++++|..++++|+|++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~-~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDD-IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 4567788888899989999999999999999977 5 779999999999998 7 56799999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHhh
Q 013800 413 KSSDQFQQVAPIRQGAVTT 431 (436)
Q Consensus 413 ~~~~~al~l~p~~~~a~~~ 431 (436)
+++++++++.|++..+..+
T Consensus 92 ~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 9999999999999887663
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.48 E-value=3.4e-07 Score=91.02 Aligned_cols=95 Identities=8% Similarity=-0.009 Sum_probs=81.6
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 013800 335 SKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HVLAAY 398 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-----~p~~~---~~~~~l 398 (436)
..|+|++|+..|++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++++ .|+++ ..+.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 568999999999999986 3455 4678999999999999 99999999999975 35555 668999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhh-----CCCChhHHh
Q 013800 399 ACFLWETEEDEDDSKSSDQFQQV-----APIRQGAVT 430 (436)
Q Consensus 399 a~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a~~ 430 (436)
|.+|..+|++++|+.+|++++++ .|+++....
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999999986 477776555
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.45 E-value=1.6e-06 Score=68.10 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=48.9
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY-------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
....+|..++..++|..|+..|+++++.. +....++..+|.++.++|++++|+.++++++++.|++..+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 45566777777777777777777776642 23346666777777777777777777777777777766665555
Q ss_pred H
Q 013800 273 A 273 (436)
Q Consensus 273 a 273 (436)
+
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 5
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.45 E-value=2.4e-06 Score=67.07 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=63.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILAN-------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
..++..|+|..|+.+|+.|++.. +..+.++..+|.+++++|+ +++|+.++++++++.|++..+..+++.+
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 88899999999999999999873 3457899999999999999 9999999999999999999998888743
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.43 E-value=2.3e-06 Score=85.02 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=80.0
Q ss_pred hhhhCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDE-----YPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWM 270 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~-----~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~ 270 (436)
.....|+|++|+.+|++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|++ ...++
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 334568999999999999985 45555 67889999999999999999999999975 3444 55788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALA-----APQDSNILA 305 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~~~~ 305 (436)
++|.+|..+|+ +++|+.+|++|+++ .|+++.+..
T Consensus 387 nLa~~~~~qg~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 387 KLGRLYMGLEN-KAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999985 99999999999886 477766543
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.32 E-value=2.4e-06 Score=84.91 Aligned_cols=109 Identities=8% Similarity=-0.090 Sum_probs=84.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---
Q 013800 239 AQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWMQYAKLVWELHRDQHRALTYFERAALA-----APQDSN--- 302 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~--- 302 (436)
..-+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+ |++|+.++++++++ .|+++.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34456789999999999999975 3454 4578899999999875 99999999999976 355554
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHh
Q 013800 303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-----NPGDGE---IMSQYAKLVWEL 370 (436)
Q Consensus 303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~ 370 (436)
.++++| .+|..+|++++|+.+|++|+++ .|+++. ++.+|+.+...+
T Consensus 373 ~l~nLa----------------------~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 373 QVMKVG----------------------KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------------HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 456777 8888999999999999999886 456554 445566655443
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.30 E-value=1.3e-06 Score=86.71 Aligned_cols=99 Identities=8% Similarity=-0.041 Sum_probs=83.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HV 394 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-----~p~~~---~~ 394 (436)
.-+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++++ .|+++ ..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3455789999999999999976 3444 5678999999999999 99999999999975 35555 56
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhh-----CCCChhHHh
Q 013800 395 LAAYACFLWETEEDEDDSKSSDQFQQV-----APIRQGAVT 430 (436)
Q Consensus 395 ~~~la~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a~~ 430 (436)
+.++|.+|..+|++++|+.+|++++++ -|+++....
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 899999999999999999999999986 477776555
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.20 E-value=0.00021 Score=72.35 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=120.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC-CCHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVWELH--------RDQHRALTYFERAALAAP-QDSNIL 304 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~--------~d~~~A~~~~~~al~~~p-~~~~~~ 304 (436)
+...-..+.+.|+.++|++.|++..+..- -+...|..+-.++...+ ++.++|..+|++.....- -+...+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444566677777777777777766532 24555555444433221 126788999988877642 266777
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
..+. ..+.+.|++++|..+|++..+.. .-+..+|..+-..+.+.|+ .++|.++|++
T Consensus 109 n~lI----------------------~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~-~~~A~~l~~~ 165 (501)
T 4g26_A 109 TNGA----------------------RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD-ADKAYEVDAH 165 (501)
T ss_dssp HHHH----------------------HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHH----------------------HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC-HHHHHHHHHH
Confidence 7777 77888899999999999887753 2258889999999999999 9999999999
Q ss_pred HHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 384 AVQAS--PADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 384 al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
..+.. |+ ...+..+..++.+.|+.++|.+++++..+.
T Consensus 166 M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 166 MVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 88753 44 678888999999999999999999987765
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.18 E-value=0.00045 Score=69.88 Aligned_cols=157 Identities=12% Similarity=0.069 Sum_probs=126.2
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCC-CCHHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEY--PCHPLLLRNYAQLLQKKG---------DLYRAEDYYNHATMADP-GDGESWMQYA 273 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~~~~~la 273 (436)
..+.+.|+.++|+++|+++.+.. | +...|..+-.++...+ ..++|.+.|++.....- -+...|..+.
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35677899999999999998863 4 5666666666665443 37899999999887643 3778888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 274 KLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
..+...++ +++|..+|++..+.. .-+...+..+. ..|.+.|++++|.+.|++..+.
T Consensus 113 ~~~~~~g~-~~~A~~l~~~M~~~g~~Pd~~tyn~lI----------------------~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 113 RLAVAKDD-PEMAFDMVKQMKAFGIQPRLRSYGPAL----------------------FGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCccceehHHH----------------------HHHHHCCCHHHHHHHHHHHHhc
Confidence 89888875 999999999998764 23667777777 7788899999999999998875
Q ss_pred CC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 353 NP-GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 353 ~p-~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
.- -+..+|..+..++.+.|+ .++|.++|++.-+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~-~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKN-ADKVYKTLQRLRDL 204 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHh
Confidence 32 247889999999999999 99999999998764
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.06 E-value=0.00011 Score=60.49 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=61.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDL------YRAEDYYNHATMADPGD--------GESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
..|.+++.|..+.......|+. ++-++.|++|+..-|-. ...|..+|.. ... +|.++|...|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei-~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI-QEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH-HCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh-cCHHHHHHHHHH
Confidence 4567777777777777777776 66677777777665532 3344445532 333 246666666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
++.+....+.+|..+| ....++|+...|...+.+|+.+.|..
T Consensus 86 a~~~hKkFAKiwi~~A----------------------qFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 86 ARANCKKFAFVHISFA----------------------QFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHCTTBHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHhHHHHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHhccCCCc
Confidence 6655555555555555 44444555666666666666655553
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.05 E-value=7.4e-05 Score=61.53 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=90.0
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH------HHHHHHHHHHHHhCCC--------CHHHH
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL------EGAEEYFSRAILANPG--------DGEIM 360 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~ 360 (436)
-+.|++++.|..+. ....+.|+. ++-++.|++|+..-|- ....|
T Consensus 7 ~~~p~~yd~W~~yl----------------------~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LW 64 (161)
T 4h7y_A 7 MMMANNPEDWLSLL----------------------LKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQ 64 (161)
T ss_dssp ---CCSHHHHHHHH----------------------HHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHH
T ss_pred eeCCCCHHHHHHHH----------------------HHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHH
Confidence 45799999999999 555555776 7788899999887664 24567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..+|.. ...++ .++|.+.|+.++.+....+.+|...|++..++|+...|.+.+.+++.+.|...+...
T Consensus 65 IrYA~~-~ei~D-~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 65 VRFAEL-KAIQE-PDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHHHH-HHHHC-GGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHHHH-HHhcC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 777755 45566 999999999999988888999999999999999999999999999999987666443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.95 E-value=9.2e-05 Score=59.57 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH---HHHHHHHHHHhC-C-CCH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG---AEEYFSRAILAN-P-GDG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~ 357 (436)
...+...|.+.+..++....+.+++| +++.+..+... ++.+++..++.+ | ..-
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yA----------------------w~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~R 74 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYA----------------------WCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 74 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHH----------------------HHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCCcchHH
Confidence 56677777878887888888888888 66666555544 888888887766 4 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.++.||..++++|+ |.+|+.+++..|+..|++..+......+
T Consensus 75 d~lY~LAvg~yklg~-Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 788888989999988 9999999999999999888776554443
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.86 E-value=8.5e-05 Score=59.78 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCChHH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK---ALCYFERAVQAS-P-ADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~ 410 (436)
......+...|.+.+..++...++.+++|+++..... ... ++.+++..+..+ | ..-+.++.+|..++++|+|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~-~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3455677888888888888899999999999998776 555 999999988876 5 455889999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHh
Q 013800 411 DSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~a~~ 430 (436)
|+.+++.+++..|.+..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999988776
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.65 E-value=0.00013 Score=61.25 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=79.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------C------
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS------P------ 389 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~------p------ 389 (436)
..+...|.|+.|+.....++.+..++ .+++..+|.+++..++ |.+|...|++||+.. +
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e-yrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE-YRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 56678899999999999877664332 3488999999999999 999999999998642 1
Q ss_pred -------------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhc
Q 013800 390 -------------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVY 435 (436)
Q Consensus 390 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~an~y 435 (436)
.+.++.+.++.|+.+++++++|+..++.+-...-.......+|++|
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1126889999999999999999998876544433444444566665
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.19 E-value=0.0018 Score=54.36 Aligned_cols=92 Identities=14% Similarity=-0.027 Sum_probs=65.4
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY---PCH------PLLLRNYAQLLQKKGDLYRAEDYYNHATMAD---PGD-- 265 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~-- 265 (436)
+++.-...+...|.|+.|+-....++... |+- ..++..+|.+++..++|..|...|++++... +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444556788899999999999876643 331 2578999999999999999999999997652 111
Q ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 266 --------------------GESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 266 --------------------~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
.++.+.++.|+.++++ +.+|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~-~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ-DKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTC-HHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCC-HHHHHHHHhc
Confidence 2456666666666654 6666666543
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.07 E-value=0.018 Score=46.94 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCC
Q 013800 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d 373 (436)
.-...+.++++ +++.+.. +..+++.+++..++..|. .-+.++.||..++++|+
T Consensus 36 ~vs~~t~F~YA----------------------w~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~- 92 (144)
T 1y8m_A 36 TATIQSRFNYA----------------------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE- 92 (144)
T ss_dssp TSCHHHHHHHH----------------------HHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC-
T ss_pred CCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh-
Confidence 45678888888 4444444 445788888888888874 56788888888999988
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 374 HDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 374 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
|.+|+++++..|+..|++..+......+
T Consensus 93 Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 93 YSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999999887766554433
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.07 E-value=0.0032 Score=50.73 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHH
Q 013800 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d~~ 375 (436)
.+.+.+++| +++.+.. +..+++.+++..++.+|. .-+.++.||..++++|+ |.
T Consensus 39 s~qt~F~yA----------------------w~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-Y~ 95 (134)
T 3o48_A 39 TIQSRFNYA----------------------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YS 95 (134)
T ss_dssp CHHHHHHHH----------------------HHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HH
T ss_pred ChhhHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-HH
Confidence 567788888 4444443 445788888888888884 47888899999999999 99
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 376 KALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 376 ~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+|+++.+..|++.|++..+......+
T Consensus 96 ~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 96 MAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 99999999999999988776555444
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.03 E-value=0.011 Score=48.29 Aligned_cols=77 Identities=8% Similarity=-0.043 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 354 PGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.-..++.+++|+++..... |..+++.+++..+...|.. -+.++.+|..++++|+|++|.++.+.+|++.|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4568999999999988765 2468999999999998854 578899999999999999999999999999999988766
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.88 E-value=0.0057 Score=49.32 Aligned_cols=75 Identities=8% Similarity=-0.047 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 356 DGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.+++.+++|+++.+... |..+++.+++..+...|.. -+.++.+|..++++|+|++|.++.+.++++.|.+..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 58999999999988765 2458999999999999854 688999999999999999999999999999999998776
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.014 Score=61.27 Aligned_cols=124 Identities=15% Similarity=0.069 Sum_probs=80.8
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH---HHHHHH
Q 013800 245 KGD-LYRAEDYYNHATMADPGDGESWMQYA-KLVWELHRDQHRALTYFERAALA--------APQDSNILA---AYACFL 311 (436)
Q Consensus 245 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~---~la~~~ 311 (436)
.++ ++.|++++++..+.+|.....+.... .++...+.+--+|+..+.++++. .+.+..... ..+.++
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 445 57788889888888887643332211 11111122245677777776642 233322211 111111
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
..+- ..+...|+++-|+++.++|+...|.+...|+.|+.+|..+|+ |+.|+-.+.-+
T Consensus 341 ~~Qa---------------~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d-~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQT---------------NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE-YEKALFAINSM 397 (754)
T ss_dssp HHHH---------------HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHS
T ss_pred HHHH---------------HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc-HHHHHHHHhcC
Confidence 1111 556678999999999999999999999999999999999999 99999776654
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.48 E-value=0.15 Score=53.83 Aligned_cols=95 Identities=12% Similarity=-0.066 Sum_probs=51.7
Q ss_pred hhCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 013800 209 PNFDDSAEAEE-YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRAL 287 (436)
Q Consensus 209 ~~~g~~~~A~~-~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~ 287 (436)
...+++++|.+ ++.. -| +...+...+..+...|.+++|++..+ ++...+.+ ....+ ++++|.
T Consensus 610 ~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~---~l~~~-~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFEL---ALKVG-QLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHH---HHHHT-CHHHHH
T ss_pred HHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchheeh---hhhcC-CHHHHH
Confidence 34577777765 4411 01 01222555666677777777766542 22222222 23444 377777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 288 TYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 288 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
++.+ ..++...|..+|......++++.|.+.|.
T Consensus 673 ~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~ 705 (814)
T 3mkq_A 673 DLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFT 705 (814)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6643 23566777777766666666666665554
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.41 E-value=0.13 Score=49.91 Aligned_cols=166 Identities=8% Similarity=-0.079 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-----ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL--- 304 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~--- 304 (436)
.+.+.+|.+|...|++++-.+++......-+.-+ .....+-..+....+..+.-+..+..+++...+....|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888877776544322221 11122222222222223333344444443222211111
Q ss_pred ---HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHH
Q 013800 305 ---AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 305 ---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~ 375 (436)
..++ .+|+..|+|.+|.+.+.+.++--.. -.+++..-..++..+++ +.
T Consensus 100 ~l~~kL~----------------------~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n-~~ 156 (394)
T 3txn_A 100 SLEARLI----------------------ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN-LP 156 (394)
T ss_dssp HHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc-HH
Confidence 1334 7888899999998888888764221 14567777788889988 99
Q ss_pred HHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HCCChHHHHHHHHHHHhh
Q 013800 376 KALCYFERAVQAS---PADS----HVLAAYACFLW-ETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 376 ~A~~~~~~al~~~---p~~~----~~~~~la~~~~-~~g~~~~A~~~~~~al~l 421 (436)
++...+.++.... +.++ .+...-|..+. ..++|.+|..+|-++..-
T Consensus 157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 9999998887543 2233 34455577788 899999998888887643
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.06 E-value=0.11 Score=55.01 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=92.9
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
+...+...|.+++|+...+ ++... ..+....|++++|.+..+ .-++...|..+|..+...++ +
T Consensus 635 ~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~-~ 697 (814)
T 3mkq_A 635 IARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN-F 697 (814)
T ss_dssp HHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC-H
Confidence 3345556666666665442 23222 334577899999988754 34678999999999888874 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY 363 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (436)
+.|+.+|.++-.. . .+..++...++.+...++. ......|++..|..+|.+. .+ +...
T Consensus 698 ~~A~~~y~~~~d~-----~---~l~~l~~~~~~~~~~~~~~------~~a~~~~~~~~A~~~~~~~-----g~---~~~a 755 (814)
T 3mkq_A 698 KLAIEAFTNAHDL-----E---SLFLLHSSFNNKEGLVTLA------KDAETTGKFNLAFNAYWIA-----GD---IQGA 755 (814)
T ss_dssp HHHHHHHHHHTCH-----H---HHHHHHHHTTCHHHHHHHH------HHHHHTTCHHHHHHHHHHH-----TC---HHHH
T ss_pred HHHHHHHHHccCh-----h---hhHHHHHHcCCHHHHHHHH------HHHHHcCchHHHHHHHHHc-----CC---HHHH
Confidence 9999999986211 1 1222222233333222222 3334445555555444331 11 1112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHH
Q 013800 364 AKLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 364 a~~~~~~g~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A 411 (436)
..+|...++ +++|+.+.++ ..|.. ..+...++.-+...|+.+.|
T Consensus 756 ~~~~~~~~~-~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 756 KDLLIKSQR-FSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHTTC-HHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHcCC-hHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 234555667 8888776553 45443 25666667777777765433
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.05 E-value=0.075 Score=48.25 Aligned_cols=122 Identities=16% Similarity=0.024 Sum_probs=83.5
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.+.+.|+.++|++.+...++.+|.++.....+.+++.-.|+++.|...++.+.+++|........+-. .-.|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~--------lI~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH--------LVKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH--------HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH--------HHHH
Confidence 35667999999999999999999999999999999999999999999999999999986543222111 1111
Q ss_pred HHHHHHHHHhC-----CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 287 LTYFERAALAA-----PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 287 ~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+..=.+++.-. +..+..|..+..-. ......|+.++|...-.+|++..|.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~A-------------------l~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSF-------------------NLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHH-------------------HHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHH-------------------HHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11112222211 22333333222100 4455679999999999999888765
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.055 Score=56.88 Aligned_cols=115 Identities=9% Similarity=0.003 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--------CC
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--------NP 354 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p 354 (436)
++.|+.++++....+|.....+. .+.+..... ...+--+|+..+.++++. .+
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~-------------------~~~~Ev~av~ll~~~l~~~~~~~~~l~~ 324 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYK-TAMITILDH-------------------IETKELDMITILNETLDPLLSLLNDLPP 324 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTT-------------------CGGGHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHH-------------------hhhhhHHHHHHHHHHHHHhhhhhhhhcc
Confidence 68899999999999997654332 221111000 011222344444444321 12
Q ss_pred C----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 355 G----------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 355 ~----------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
. ....+..-+..+...|+ ++-|+++.++|+...|.....|+.|+.+|..+|+++.|+-.++.+
T Consensus 325 ~~~~~~~~~~~~~~LL~~Qa~FLl~K~~-~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 325 RDADSARLMNCMSDLLNIQTNFLLNRGD-YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccccCcchHHHHHHHHHHhccCc-HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2 23456667778888888 999999999999999999999999999999999999998766554
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.91 E-value=0.64 Score=39.00 Aligned_cols=45 Identities=7% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 381 FERAVQASPADS-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 381 ~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.++....-|.-+ ......+..++.+|-.++...+|......+|.|
T Consensus 196 ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 196 VKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 334444556654 344667788999999999999999999999887
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.71 E-value=0.3 Score=47.23 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=71.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--------C--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 334 QSKGDLEGAEEYFSRAILANPG--------D--------------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~--------~--------------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
...|+.+.|...+.+|+.+... . ..+...++..+...|+ +.+|+..+.+++..+|-+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~-~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR-ASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 3468888999999999887321 1 1234456677788999 999999999999999999
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
..++..+..++...|+..+|++.|+++..
T Consensus 205 E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 205 EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988654
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.70 E-value=0.12 Score=46.91 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=76.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHH----------
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL---AAY---------- 398 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~---~~l---------- 398 (436)
.+.+.|.+++|+......++.+|.|......|-.+++-.|+ +++|.+.++.+.+++|+..... ..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~-w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v 84 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD-FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 84 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence 35578999999999999999999999999999999999999 9999999999999988754221 111
Q ss_pred ----------------------HHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 399 ----------------------ACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 399 ----------------------a~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
+......|+.++|...-.++++..|...+
T Consensus 85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 22234457888888888888888766544
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.58 Score=39.69 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=63.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
....|+++.|.+..+.. ++...|..+|......++ ++-|+.+|+++-. ... +.
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn-~~lAe~cy~~~~D-----~~~---L~------------- 67 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN-ASLAEMIYQTQHS-----FDK---LS------------- 67 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC-HHHHHHHHHHTTC-----HHH---HH-------------
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC-hHHHHHHHHHhCC-----HHH---HH-------------
Confidence 35778888888876654 667788888888777764 8888888776521 111 11
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
.+|.-.|+.++-...-+.+.... + ++....+++.+|+ +++++++|.+.
T Consensus 68 ---------~Ly~~tg~~e~L~kla~iA~~~g-~----~n~af~~~l~lGd-v~~~i~lL~~~ 115 (177)
T 3mkq_B 68 ---------FLYLVTGDVNKLSKMQNIAQTRE-D----FGSMLLNTFYNNS-TKERSSIFAEG 115 (177)
T ss_dssp ---------HHHHHHTCHHHHHHHHHHHHHTT-C----HHHHHHHHHHHTC-HHHHHHHHHHT
T ss_pred ---------HHHHHhCCHHHHHHHHHHHHHCc-c----HHHHHHHHHHcCC-HHHHHHHHHHC
Confidence 45556677766555544444322 2 2223345667788 88888888653
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.33 E-value=0.3 Score=47.31 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
...++..+...+ ++.+|+..+++++..+|-+..++..+. .++...|+..+|+..|++
T Consensus 174 ~~~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm----------------------~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 174 HTAKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLI----------------------TAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHH
Confidence 344555666666 499999999999999999999999999 666667777777777666
Q ss_pred HH
Q 013800 349 AI 350 (436)
Q Consensus 349 al 350 (436)
+-
T Consensus 231 ~r 232 (388)
T 2ff4_A 231 VK 232 (388)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.26 Score=41.83 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
+..+.|+++.|.++.+.. ++...|..+|......|+++-|+.+|.++
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345679999999987765 67899999999999999999999999876
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.74 E-value=3.2 Score=42.57 Aligned_cols=87 Identities=9% Similarity=0.054 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
..++...+.++.....+ ......++......|+ +..|...|.+.-..........+.+|.++..+|+.++|..+|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d-~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp CHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTC-HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCC-HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677777776654443 3344444445556788 999999997754433345778899999999999999999999998
Q ss_pred HhhCCCChhH
Q 013800 419 QQVAPIRQGA 428 (436)
Q Consensus 419 l~l~p~~~~a 428 (436)
.. ...|.+.
T Consensus 346 a~-~~~fYg~ 354 (618)
T 1qsa_A 346 MQ-QRGFYPM 354 (618)
T ss_dssp HT-SCSHHHH
T ss_pred hc-CCChHHH
Confidence 86 3455553
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.35 E-value=0.18 Score=50.45 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=56.3
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
....+|.+..-...+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++..++-.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4556677766667777777777777777777777777777777777777777777777777666666666666655443
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.26 E-value=0.41 Score=46.29 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=104.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHH----
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGES---- 268 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~---- 268 (436)
.+...+|.++...|++++...++......-+.-+ .....+-..+.. .+..+.-++.+..+++.....-..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888887777776544333222 122222222222 345555566666666543322222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 269 --WMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSN----ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 269 --~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
-..+|.+|+..+ +|.+|.+++.+.++--.. +.. ++..-. .+|...+++.
T Consensus 100 ~l~~kL~~l~~~~~-~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~----------------------~~~~~~~n~~ 156 (394)
T 3txn_A 100 SLEARLIALYFDTA-LYTEALALGAQLLRELKKLDDKNLLVEVQLLES----------------------KTYHALSNLP 156 (394)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccccchhHHHHHHHHH----------------------HHHHHhccHH
Confidence 237899988887 599999999998875322 211 112222 7788889999
Q ss_pred HHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhC
Q 013800 341 GAEEYFSRAILAN---PGDG----EIMSQYAKLVW-ELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 341 ~A~~~~~~al~~~---p~~~----~~~~~la~~~~-~~g~d~~~A~~~~~~al~~~ 388 (436)
++...|.++.... +.++ .....-|..+. ..++ |.+|...|-.++...
T Consensus 157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rd-yk~A~~~F~eaf~~f 211 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERD-FKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccC-HHHHHHHHHHHHhcc
Confidence 9999998886653 1223 34455666677 6777 999999998887543
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.73 E-value=0.83 Score=38.32 Aligned_cols=91 Identities=9% Similarity=-0.061 Sum_probs=65.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--h---------------CCCCHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ--A---------------SPADSH 393 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~--~---------------~p~~~~ 393 (436)
..+.-.|.|..++-.+. .-+.....+.-+.|+...++ |..|+..++..++ . +|.+.+
T Consensus 41 I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKd-YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 41 IVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKD-YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 66666788877765542 33456677777888888877 8888888888873 1 344444
Q ss_pred -HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 394 -VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 394 -~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.+..+|.++.+.|+.++|+.++.......|.|..
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 4456788888899999999999888888776654
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.62 E-value=0.48 Score=47.34 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=62.3
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.+......+..|..+|.+|+.+.|++...++.||.+....|+ .-+|+-+|.+++....-.+.+..++..++..
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~-~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc-cHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 666667788999999999999999999999999999999998 8999999999987766667777777766543
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.98 E-value=1.2 Score=48.25 Aligned_cols=98 Identities=8% Similarity=-0.138 Sum_probs=81.2
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMID-----EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 272 (436)
..+..+=..+++.|+.++|..+|..+.+ ..| +...|..+...|.+.|+.++|.+.|++..+..- -|...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4677777889999999999999977543 345 788999999999999999999999999988643 377778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 273 AKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
-.++.+.++..++|.++|++..+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8888888765678999999988764
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.34 E-value=6.6 Score=43.52 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=68.2
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHHcC
Q 013800 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----------------------DPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~ 281 (436)
+..-|.++..-+.+|.++...|++++|..+|+++-.- ....+..|.....++...+
T Consensus 835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~- 913 (1139)
T 4fhn_B 835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES- 913 (1139)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS-
T ss_pred hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC-
Confidence 3455777777899999999999999999999887321 0112344556665555554
Q ss_pred CHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHccCchHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQ-DSN----ILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~-~~~----~~~~la~~~~~~g~~~~A~~~~ 324 (436)
-++.+++.-+.|++..+. +.. .|.++-......+++++|-..+
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 589999999999987654 332 4666676666666666665555
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.89 E-value=5.7 Score=43.09 Aligned_cols=97 Identities=11% Similarity=-0.109 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAY 307 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~l 307 (436)
..|..+-..|.+.|+.++|...|....+. -.-+...|..+-..|.+.|+ +++|.++|++..+.. .-|...+..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~-~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46788889999999999999999775432 34477889999889999986 999999999998865 2377788888
Q ss_pred HHHHHHccCc-hHHHHHHHHHHHH
Q 013800 308 ACFLWEMEDD-GEDDKAQEEHIQV 330 (436)
Q Consensus 308 a~~~~~~g~~-~~A~~~~~~~~~~ 330 (436)
..++++.|+. ++|.++++++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 8889998885 6788899888877
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.46 E-value=1.4 Score=43.35 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA-D-PGD----GESWMQYAKLVWELHRDQHRALTYFERAAL---AAPQDSNI 303 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~----~~~~~~la~~~~~~~~d~~~A~~~~~~al~---~~p~~~~~ 303 (436)
.....|+.++...|++.+|...+.....- . ..+ .+++.....++...+ |+.+|...++++.. ..+..+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~-d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG-DYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhcccCCcHHH
Confidence 45578999999999999999999987642 1 112 467777788888886 59999999999742 23444332
Q ss_pred ----HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 304 ----LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 304 ----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+...| .++...++|.+|..+|..++..
T Consensus 217 k~~~~~~~~----------------------~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLV----------------------KISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHH----------------------HHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHhc
Confidence 23344 6777788888888888888764
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.22 E-value=0.55 Score=46.07 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRALTYFERAALAAP--QDSNILAA 306 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p--~~~~~~~~ 306 (436)
..++..+|..|...|++++|.+.|.++...... -.+.+.....++...+ ||..+...+.++-.+.. .++.....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 356788999999999999999999888775322 3567777777777776 59999999988866532 23322211
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 354 (436)
+ ....| .++...++|..|...|..++....
T Consensus 210 l---k~~~g---------------l~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 210 Y---KTYYG---------------IHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp H---HHHHH---------------HGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred H---HHHHH---------------HHHHHhChHHHHHHHHHHHhccCC
Confidence 1 11111 556678899999999988876543
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.79 E-value=8.5 Score=39.45 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 362 ~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
..+..++..|. ...|...+...+... +..-...++.+....|.++.++...
T Consensus 386 ~r~~~L~~~g~-~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 386 ARVRELMYWNL-DNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-hhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 34455666666 666666665554432 2333445555556666666655444
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.66 E-value=3.5 Score=45.76 Aligned_cols=162 Identities=11% Similarity=-0.024 Sum_probs=91.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC--HHHHHHHHHHHHHc
Q 013800 238 YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQD--SNILAAYACFLWEM 314 (436)
Q Consensus 238 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~--~~~~~~la~~~~~~ 314 (436)
+...+...+.++-|.+ .+...|.++...+.+|.++...++ +++|..+|+++..-- .++ ......+..+....
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge-~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 3444555566655443 345567788888889999888874 999999998874211 110 00000000000000
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DG----EIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
.....-..+|...+ .++.+.+.++.+++..+.|++..+. +. ..|.++=..+...|+ |++|...+...=. ..
T Consensus 893 ~~~~~l~~YY~hv~--~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~-ye~Ay~aL~~~pd-~~ 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLS--KKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK-FDAAHVALMVLST-TP 968 (1139)
T ss_dssp TSCCSSHHHHHHHH--HHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC-SGGGGHHHHHHHH-SS
T ss_pred cccccHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC-HHHHHHHHHhCCC-HH
Confidence 00000001111111 6777889999999999999987653 33 256777778889999 9999877754321 12
Q ss_pred CCHHHHHHHHHHHHHCCCh
Q 013800 390 ADSHVLAAYACFLWETEED 408 (436)
Q Consensus 390 ~~~~~~~~la~~~~~~g~~ 408 (436)
.....+..+...+++.|..
T Consensus 969 ~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 2245555555555555443
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.52 E-value=14 Score=36.16 Aligned_cols=184 Identities=8% Similarity=0.009 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcCC
Q 013800 212 DDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW---ELHRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~d 282 (436)
|++++|++.+....+. .+....+...+..++...++++...+++.-..........+...+..... ..-..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6778888777544432 13345778888889999999998888776554443333332222221111 10000
Q ss_pred HHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 283 QHRALTYFERAALAA----PQ-------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 283 ~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
.+ .......+..- .+ .......|+ .++...|++.+|...+.....
T Consensus 110 ~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La----------------------~i~e~~g~~~eA~~iL~~l~~ 165 (445)
T 4b4t_P 110 LD--LNTRISVIETIRVVTENKIFVEVERARVTKDLV----------------------EIKKEEGKIDEAADILCELQV 165 (445)
T ss_dssp TH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHH
T ss_pred hh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHH
Confidence 11 11112222211 11 122334556 555556666666666655432
Q ss_pred h-CC-C----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 352 A-NP-G----DGEIMSQYAKLVWELHHDHDKALCYFERAVQ---ASPADS----HVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 352 ~-~p-~----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
- .. . -.+.+....+++...++ +.+|...+.++.. ..+..+ ..+...|.++...++|.+|..+|..+
T Consensus 166 Et~~~~~~~~kve~~l~q~rl~l~~~d-~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 166 ETYGSMEMSEKIQFILEQMELSILKGD-YSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 11 0 13455555566666666 6666666666432 122222 33445556666666666666666655
Q ss_pred Hh
Q 013800 419 QQ 420 (436)
Q Consensus 419 l~ 420 (436)
..
T Consensus 245 ~~ 246 (445)
T 4b4t_P 245 YQ 246 (445)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.51 E-value=0.83 Score=45.56 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=47.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
+.|...+.+++|..+..++. .|.. ...++.+|.++...++ |.+|.+++..|+...|.+
T Consensus 239 RnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~-Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 239 RDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD-YSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTSSCSCS
T ss_pred HHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCcc
Confidence 77888899999999998884 4432 4567788999999999 999999999999877654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.39 E-value=0.76 Score=45.04 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=76.3
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----H
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--PC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD--PGDGE----S 268 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~ 268 (436)
..++..+|..+.+.|++++|.+.|.++.... +. -.++++....++...+++..+..++.++-... ..++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3578899999999999999999999998753 22 34888999999999999999999999997652 22332 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
....|.+++.. ++|.+|..+|-.++....
T Consensus 211 k~~~gl~~l~~-r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAV-RNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGT-SCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHh-ChHHHHHHHHHHHhccCC
Confidence 23344444444 469999999998876643
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.28 E-value=0.35 Score=48.23 Aligned_cols=131 Identities=10% Similarity=0.002 Sum_probs=54.6
Q ss_pred hhhCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHh-----
Q 013800 208 MPNFDDSAEAEEYYKRMID-----------EYPCHPLLLRNYAQLLQKKGDLYRAE----------DYYNHATMA----- 261 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~-----------~~P~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~----- 261 (436)
+...+++++|..+-...+. +++-.+.+|+.++.++...|+..... ..+-.++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4455778877776665541 23345677888888888888776532 233333332
Q ss_pred CCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 262 DPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 262 ~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++. ....+..+-..|...+ .|++|..+..++. .|........++..++..| +++.-+++|.
T Consensus 226 D~~~qa~l~nllLRnYL~~~-~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~G---------------RI~a~q~~Y~ 287 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNG-EVDSASDFISKLE--YPHTDVSSSLEARYFFYLS---------------KINAIQLDYS 287 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSS-CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHH---------------HHHHHTTCHH
T ss_pred CcchhHHHHHHHHHHHHccC-cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHH---------------HHHHHhccHH
Confidence 232 2556667777777765 5999999999985 4533111112222233333 8899999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 013800 341 GAEEYFSRAILANPGD 356 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~ 356 (436)
+|.+++..|++..|.+
T Consensus 288 eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 288 TANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999999999987754
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.14 E-value=6.5 Score=42.22 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=68.6
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP---C---HP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG- 266 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 266 (436)
+++..++|.++...++ +++.++...+..+. . +. .+-..+|.++.-.++ +++.+.+...+..+....
T Consensus 413 ~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 4777888888877664 67888887776432 0 11 234566666665554 466677777766443211
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013800 267 -ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326 (436)
Q Consensus 267 -~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 326 (436)
.+-+.+|.++...++ -+-...+++.+..-..++..-...+|..+...|+.+.+..+++.
T Consensus 490 ~~AalALGli~vGTgn-~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~ 549 (963)
T 4ady_A 490 EAAALGMGLCMLGTGK-PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITK 549 (963)
T ss_dssp HHHHHHHHHHHTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHH
T ss_pred HHHHHHHhhhhcccCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHH
Confidence 234455666555553 33334444444443222222223444445566777766666553
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.26 E-value=26 Score=32.41 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013800 355 GDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~~A~~~~~ 382 (436)
.+++.+..+|..++..|+ +.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~-~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDF-VYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCC-HHHHHHHHH
Confidence 467788888888888877 888877764
No 263
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=84.05 E-value=23 Score=31.69 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+-+..+|.+..+.++|++.+++.+++++.+++
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~e 63 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVE 63 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCc
Confidence 34455566666666666666666666666554
No 264
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=83.03 E-value=26 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=22.4
Q ss_pred HHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 341 GAEEYFSRAIL-----ANPGDGE---IMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 341 ~A~~~~~~al~-----~~p~~~~---~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.|...|+.|+. +.|.+|. ...+.+..|+..-++.++|..+.++|+
T Consensus 153 ~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 153 STLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555555553 2444442 234444445543333666666665555
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.54 E-value=43 Score=31.22 Aligned_cols=136 Identities=12% Similarity=0.049 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013800 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
.+++.+..+|..|++.+ ++.+|..+|- +..++ +..+..+-.-....+...++.-.+.+++ ..|...++...|
T Consensus 134 Gdp~LH~~ig~~~~~e~-~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaV--L~yL~l~n~~~A 206 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEG-EFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCARAV--LPYLLVANVRAA 206 (336)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHH--HHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHccC-CHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHH--HHHHHhCCHHHH
Confidence 47888888888888876 4888888873 12222 2444333332333334455555555555 677788888888
Q ss_pred HHHHHHHHH----hCC------------------CCHHH-HHHHHHHHHHhcC--CHHHHHHHHHHHHHhCC-CCHHHHH
Q 013800 343 EEYFSRAIL----ANP------------------GDGEI-MSQYAKLVWELHH--DHDKALCYFERAVQASP-ADSHVLA 396 (436)
Q Consensus 343 ~~~~~~al~----~~p------------------~~~~~-~~~la~~~~~~g~--d~~~A~~~~~~al~~~p-~~~~~~~ 396 (436)
...+..-++ .+| ..+.. ...+....++.+. -|..-.+.|+..++.+| .....+.
T Consensus 207 ~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~ 286 (336)
T 3lpz_A 207 NTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALE 286 (336)
T ss_dssp HHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHH
T ss_pred HHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 776554443 223 22221 1122222233332 03444555566667777 6677888
Q ss_pred HHHHHHHHCC
Q 013800 397 AYACFLWETE 406 (436)
Q Consensus 397 ~la~~~~~~g 406 (436)
.+|..|+...
T Consensus 287 ~IG~~YFgi~ 296 (336)
T 3lpz_A 287 LIAEMYFGIQ 296 (336)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHcCCC
Confidence 8888888664
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.33 E-value=44 Score=31.18 Aligned_cols=77 Identities=10% Similarity=-0.015 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH---HHHHHHHHH-hCCCCHHHHHHHHHHH-HHhcCC
Q 013800 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA---EEYFSRAIL-ANPGDGEIMSQYAKLV-WELHHD 373 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A---~~~~~~al~-~~p~~~~~~~~la~~~-~~~g~d 373 (436)
.++..+..+|..++..+++.+|..++ -.|.-+.| ...+-+... ..|.....+...|.+. ...++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~----------ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n- 202 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL----------VLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVAN- 202 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH----------TTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH----------HhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCC-
Confidence 58999999999999998887776654 23443222 122222222 2455667777666654 56666
Q ss_pred HHHHHHHHHHHHH
Q 013800 374 HDKALCYFERAVQ 386 (436)
Q Consensus 374 ~~~A~~~~~~al~ 386 (436)
...|...+...++
T Consensus 203 ~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 203 VRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999887665543
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=75.88 E-value=10 Score=30.59 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=30.9
Q ss_pred hhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
+..+|.-++-.+.+...+...+-++..++.+|.+|.+.|+..+|.+.+.+|.+.
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344555555555555554545445666666666666666666666666666543
No 268
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.33 E-value=39 Score=27.30 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=35.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
..+..+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+ ..+|.+++.+|-+.
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~-~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGD-ERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc-hhhHHHHHHHHHHh
Confidence 344556666666666666555555567777777777777777 77777777776553
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.82 E-value=80 Score=34.05 Aligned_cols=52 Identities=10% Similarity=-0.064 Sum_probs=30.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 238 YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 238 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
+...+...|.++-|.+ .+..-|.++..-+.+|.++...|. +++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge-~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKE-AVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTC-HHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 3344445555543332 334556666666777777777764 777777777664
No 270
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=62.96 E-value=79 Score=27.75 Aligned_cols=47 Identities=11% Similarity=0.278 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHH-CCChHHHHHHHHHHHh
Q 013800 374 HDKALCYFERAVQ-----ASPADSH---VLAAYACFLWE-TEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 374 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~~-~g~~~~A~~~~~~al~ 420 (436)
.+.|...|+.|++ +.|.+|. ...+++.+|+. +++.++|....++++.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567778888774 4677773 33555666665 7999999888887765
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.45 E-value=63 Score=27.67 Aligned_cols=82 Identities=13% Similarity=0.061 Sum_probs=58.0
Q ss_pred HHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 013800 219 EYYKRMIDEY---------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--DPGDGESWMQYAKLVWELHRDQHRAL 287 (436)
Q Consensus 219 ~~~~~al~~~---------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~d~~~A~ 287 (436)
.++++++... |....+|..++..+ ..+...++.+.|.-.... .-..+..|...|..+...++ +.+|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~-~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQF-FLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 5677777632 22335666666655 234477888888887764 55678888899988777764 99999
Q ss_pred HHHHHHHHhCCCCHH
Q 013800 288 TYFERAALAAPQDSN 302 (436)
Q Consensus 288 ~~~~~al~~~p~~~~ 302 (436)
.+|+..++....-..
T Consensus 136 ~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 136 VLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHTTCBSHH
T ss_pred HHHHHHHHcCCccHH
Confidence 999999987755433
No 272
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=60.72 E-value=12 Score=27.09 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=10.9
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013800 335 SKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~ 351 (436)
..|++++|+.+|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 56777777666666654
No 273
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=60.11 E-value=13 Score=26.98 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=10.8
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013800 335 SKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~ 351 (436)
..|++++|+.+|..+++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55677766666666554
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=59.99 E-value=25 Score=24.81 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGES 268 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (436)
..+|..+...|++++|..+|-+|+...|.-...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 456777777777888888777777777665443
No 275
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=59.17 E-value=99 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHH----hCCCCHH---HHHHHHHHHHH-CCChHHHHHHHHHHHh
Q 013800 374 HDKALCYFERAVQ----ASPADSH---VLAAYACFLWE-TEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 374 ~~~A~~~~~~al~----~~p~~~~---~~~~la~~~~~-~g~~~~A~~~~~~al~ 420 (436)
.+.|...|+.|++ +.|.+|. ...+++.+|+. +++.++|....++++.
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3577888888876 4566663 33555666665 7999999988888775
No 276
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=57.73 E-value=1e+02 Score=27.31 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKLV 276 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 276 (436)
.-+..+|.+..+.++|++...+.+++++.+++ ..+-...+..+|
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 34567788888899999999999998888776 344444444443
No 277
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=56.92 E-value=1e+02 Score=27.07 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+..+|.+..+.++|++..++.+++.+.+++
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~~~e 40 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEKGEE 40 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCc
Confidence 444555555566666666666666555554
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.22 E-value=53 Score=35.43 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=55.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------------------CC--HHHHHHHHHHHHHH
Q 013800 223 RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DP--------------------GD--GESWMQYAKLVWEL 279 (436)
Q Consensus 223 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p--------------------~~--~~~~~~la~~~~~~ 279 (436)
..+..-|.++..-+.+|.++...|++++|..+|++|-.- .. .. ...|.+...++...
T Consensus 831 eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~ 910 (950)
T 4gq2_M 831 QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE 910 (950)
T ss_dssp HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHT
T ss_pred HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhc
Confidence 344566778877899999999999999999999987421 11 11 22445555554444
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHH
Q 013800 280 HRDQHRALTYFERAALAA-PQDSN 302 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~-p~~~~ 302 (436)
+ -++-++...+.||+.. +++..
T Consensus 911 ~-a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 911 S-AYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp T-CHHHHHHHHHHHHHTCCSCCHH
T ss_pred C-CHHHHHHHHHHHHhhcccCCcc
Confidence 4 5999999999999754 44544
No 279
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=55.47 E-value=79 Score=33.97 Aligned_cols=202 Identities=9% Similarity=0.026 Sum_probs=101.9
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CH----H
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEY-PCH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP---G---DG----E 267 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~-P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~ 267 (436)
.+|.++ .|+.++++..+.+.+... ..+ .-+++.+|.++...+ .++++++...+..+. . .. .
T Consensus 381 SLGlIh--~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~g 456 (963)
T 4ady_A 381 SLGVIH--KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHG 456 (963)
T ss_dssp HHHHHT--SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred Hhhhhc--cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHH
Confidence 444444 466677877777766522 122 245666666665555 468888888776543 1 11 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDS--NILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPI 333 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~ 333 (436)
+...+|.++...+ -+++...+...+..+.... .+-+.+|.++...|+.+....++..+... ..+
T Consensus 457 AaLGLGla~~GS~--~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 457 ASLGIGLAAMGSA--NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHHHHHSTTCC--CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 4445665555443 3678888888877543221 23345665555555554433333321111 223
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHhcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Q 013800 334 QSKGDLEGAEEYFSRAILANPGDGEIMS----QYAKLVWELHHDHDKALC-YFERAVQASPA-DSHVLAAYACFLWETEE 407 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~d~~~A~~-~~~~al~~~p~-~~~~~~~la~~~~~~g~ 407 (436)
...|+.+.+....+.... . .++.+.+ .+|.+|...|+ ..|++ ++..+.. +++ +..-...+|..+...|+
T Consensus 535 l~~g~~e~~~~li~~L~~-~-~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~~-d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 535 INYGRQELADDLITKMLA-S-DESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAVS-DSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HTTTCGGGGHHHHHHHHH-C-SCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTSSS
T ss_pred hhCCChHHHHHHHHHHHh-C-CCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhccCC
Confidence 345666555554444333 2 2333333 34555566777 45555 4444443 333 22222333444445566
Q ss_pred hHHHHHHH
Q 013800 408 DEDDSKSS 415 (436)
Q Consensus 408 ~~~A~~~~ 415 (436)
.+.+...+
T Consensus 610 ~e~v~rlv 617 (963)
T 4ady_A 610 YTTVPRIV 617 (963)
T ss_dssp CSSHHHHT
T ss_pred HHHHHHHH
Confidence 54443333
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.61 E-value=1.1e+02 Score=26.05 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=51.5
Q ss_pred HHHHHHHHhC---------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHH
Q 013800 344 EYFSRAILAN---------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 344 ~~~~~al~~~---------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~ 412 (436)
..+++++... |....+|..++..+ ..+. ..++...|....... -..+..|..+|..+...|++.+|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~-~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNN-FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTC-HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccc-cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4566666542 22234555555443 1233 567888887776644 456677888888888999999999
Q ss_pred HHHHHHHhhCC
Q 013800 413 KSSDQFQQVAP 423 (436)
Q Consensus 413 ~~~~~al~l~p 423 (436)
++|+.+++..-
T Consensus 136 ~Vy~~GI~~~A 146 (202)
T 3esl_A 136 VLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99988887653
No 281
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=49.60 E-value=29 Score=25.60 Aligned_cols=28 Identities=21% Similarity=0.054 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+..+-..+..+...|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455677888888888888888666554
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.97 E-value=1.7e+02 Score=26.89 Aligned_cols=82 Identities=12% Similarity=-0.021 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHc--cCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA-CFLWEM--EDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~--g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
.++..+..+|..++..+ ++.+|..+|-..- .+++..+..+- ..+... |...++.-.+.+++ ..|...++..
T Consensus 132 Gdp~LH~~~a~~~~~e~-~~~~A~~H~i~~~---~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaV--L~yL~l~n~~ 205 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGD-FVYEAERYFMLGT---HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLV--FNYLFISNIS 205 (312)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH--HHHHHTTBHH
T ss_pred CCHHHHHHHHHHHhhcC-CHHHHHHHHHhCC---CccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHhcCHH
Confidence 46788888888888776 4888877774211 11233332222 222221 44444444444444 5666778888
Q ss_pred HHHHHHHHHHH
Q 013800 341 GAEEYFSRAIL 351 (436)
Q Consensus 341 ~A~~~~~~al~ 351 (436)
.|...|..-.+
T Consensus 206 ~A~~~~~~f~~ 216 (312)
T 2wpv_A 206 FAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777766543
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=47.81 E-value=41 Score=28.79 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
...+.+|.++...++|.+|.+.+..|+...|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4567777777778888888888888877776553
No 284
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=44.57 E-value=51 Score=24.49 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
..+...|+++.|+.+|-+|+.+.|.
T Consensus 28 E~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 28 EELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 5666677788888777777777666
No 285
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.53 E-value=1.3e+02 Score=29.38 Aligned_cols=60 Identities=10% Similarity=-0.082 Sum_probs=46.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANP----------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA-SPAD 391 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-~p~~ 391 (436)
.+|++.++...+...++..-...+ +-...++.+|+.+...++ |.+|.+.+..|+.. .|..
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~-y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQ-VHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHcc-HHHHHHHHHHHHHhcCCcc
Confidence 678888888888877755433322 124678899999999988 99999999999998 6654
No 286
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=43.37 E-value=82 Score=29.63 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=50.5
Q ss_pred ChhhhhhHhhhhhhC--CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 013800 197 FDDAGEVVDLIMPNF--DDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DP 263 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 263 (436)
.+-+.+++|.+-... .....++.+|.++|.. .-.+..-|..+|..+++.+++.+|+..+..+-.. ..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~r 333 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSK 333 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCG
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 445666666543221 2223488888888873 2345677888999999999999999988877553 23
Q ss_pred CCHHHHHHHH
Q 013800 264 GDGESWMQYA 273 (436)
Q Consensus 264 ~~~~~~~~la 273 (436)
+|.++|..+-
T Consensus 334 eDeEIYKEf~ 343 (472)
T 3re2_A 334 DDEEMYKEFH 343 (472)
T ss_dssp GGHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4555554443
No 287
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=43.33 E-value=1.7e+02 Score=25.54 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=38.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
.+-+..|+.+.|...|+.|+++ +|-......+.+..|+..-++.++|..+.++|+.
T Consensus 133 lAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 133 KLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444566778888888888764 3334456667777777666668888888888865
No 288
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=42.76 E-value=55 Score=27.99 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=17.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
.++...++|.+|.+.+..|++..|..
T Consensus 22 r~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 22 RKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 55666677777777777777766654
No 289
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=42.26 E-value=0.00061 Score=67.00 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=34.7
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+.+..|..+|..+...++..+|++.|-++ +++..+.....+..+.|++++=+.+++.+-+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44456666777766666666666665443 3333344445555566666666666655544
No 290
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.87 E-value=1e+02 Score=25.37 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHH------HHHHHHCCChHHHHHHHHHHHhh
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPAD---SHVLAAY------ACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~---~~~~~~l------a~~~~~~g~~~~A~~~~~~al~l 421 (436)
+.-+..++..|+ |-+|-+.++.+....+.. ...+..+ |..+.+.|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~-yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGE-FHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445566677777 888888888877765543 2223222 33456678888888888888763
No 291
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=41.02 E-value=38 Score=24.37 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=11.0
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013800 335 SKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~ 351 (436)
..|++++|+.+|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45677777766666654
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=40.99 E-value=35 Score=25.41 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
..+|..+...|+++.|+.+|-+|+...|.-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 467888888888888888888888776643
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.45 E-value=1.5e+02 Score=24.35 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---H---HHHHH-HH--HHHHHHcCCHHHHHHHHHHHHHh
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGD---G---ESWMQ-YA--KLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~---~~~~~-la--~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+..+..++..|+|=+|-+.++.+....+.. . ..+.+ +| ..++..+ +..-|..++.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rg-N~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFE-DDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 344555566677777777777776655443 1 12222 22 2333444 488888888888763
No 294
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=40.09 E-value=45 Score=24.59 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
+...+..+...|+ |++|+++.+++
T Consensus 18 ~~RrAe~ll~~gk-ydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGK-YEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred hhhHHHHHHhcCC-HHHHHHHHHHH
Confidence 3444455555555 55555555544
No 295
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=38.87 E-value=82 Score=22.09 Aligned_cols=29 Identities=7% Similarity=0.041 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
+|..+...|+ +++|..+|-+|+...|.-.
T Consensus 23 ~GE~L~~~g~-~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 23 LGEELLAQGD-YEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHHcCCHH
Confidence 4555555555 5666666666665555533
No 296
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=37.86 E-value=63 Score=23.76 Aligned_cols=11 Identities=18% Similarity=0.015 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 013800 249 YRAEDYYNHAT 259 (436)
Q Consensus 249 ~~A~~~~~~al 259 (436)
+.|+.++.+|+
T Consensus 13 ~~Ai~lv~~Av 23 (93)
T 1wfd_A 13 TAAVAVLKRAV 23 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 297
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=36.17 E-value=1.3e+02 Score=22.14 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=33.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
|..++..+ +|-+|-+.++.+....|+ +.-.+..|.+....+ ......|+. |...+.+++.
T Consensus 8 ~~~lfn~g-~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava---------------~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 8 VLGLWRAG-RYYEVHEVLEPYWLKATG-EERRLLQGVILLAAA---------------LHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH---------------HHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHhCC-ChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHH---------------HHHHHcCcH--HHHHHHHHHH
Confidence 33445554 577777777777777754 222222222222221 445567777 8888888876
No 298
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=35.04 E-value=63 Score=23.23 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=8.5
Q ss_pred HHcCCHHHHHHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHA 258 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~a 258 (436)
-..|++++|+.+|..+
T Consensus 30 D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3456666665544443
No 299
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=35.02 E-value=83 Score=32.31 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
+.....|...+..|+|.-|.+....++..+|++..+...++.+|..++
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445666777778888888888888888888888888888887777665
No 300
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.52 E-value=65 Score=24.88 Aligned_cols=10 Identities=30% Similarity=0.315 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 013800 250 RAEDYYNHAT 259 (436)
Q Consensus 250 ~A~~~~~~al 259 (436)
.|+.++.+|+
T Consensus 17 kAi~lv~~Av 26 (117)
T 2cpt_A 17 KAIDLASKAA 26 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 301
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=34.21 E-value=2.3e+02 Score=24.59 Aligned_cols=53 Identities=8% Similarity=-0.056 Sum_probs=40.3
Q ss_pred HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 244 KKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
..|+.+.|...|+.|..+ +|-......+++..|+..-++.++|..+.++|+..
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356678888888888764 34445667778888888888899999999888763
No 302
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=33.41 E-value=77 Score=30.94 Aligned_cols=60 Identities=8% Similarity=-0.083 Sum_probs=47.1
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEYP----------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGD 265 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 265 (436)
.+|++.++..-+..+++..-...+ +....++.+|.++...++|.+|.+++..|+.. .|..
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 588899999888888866544332 12367889999999999999999999999988 6654
No 303
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=32.61 E-value=72 Score=22.85 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=8.2
Q ss_pred HHcCCHHHHHHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHA 258 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~a 258 (436)
-..|+|++|+.+|..+
T Consensus 22 D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3455666665544433
No 304
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=31.10 E-value=1.5e+02 Score=30.44 Aligned_cols=48 Identities=17% Similarity=0.038 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
+.....|...+..|+ |.-|.+.+..++..+|++..+...++.+|.++|
T Consensus 450 ~~~~~~a~~~~~~g~-~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGE-YRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 334444555555555 555555555555555555555555555555554
No 305
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=30.41 E-value=78 Score=22.90 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=16.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 013800 366 LVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 366 ~~~~~g~d~~~A~~~~~~al~~ 387 (436)
-.-..|+ +++|+.+|..+++.
T Consensus 25 e~D~~g~-y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 25 ELDSESR-YPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHcCC-HHHHHHHHHHHHHH
Confidence 3366777 99999999988764
No 306
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=30.27 E-value=2.5e+02 Score=27.03 Aligned_cols=79 Identities=10% Similarity=0.033 Sum_probs=52.2
Q ss_pred ChhhhhhHhhhhhhC--CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 013800 197 FDDAGEVVDLIMPNF--DDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DP 263 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 263 (436)
.+-+.+++|.+-.-. .....++.+|+++|.. ...+...|..+|-.+++.+++.+|+..+..+-.. ..
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~r 340 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR 340 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCT
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhccccc
Confidence 345666666543211 1223477888888873 2345567888899999999999999998887553 45
Q ss_pred CCHHHHHHHHHH
Q 013800 264 GDGESWMQYAKL 275 (436)
Q Consensus 264 ~~~~~~~~la~~ 275 (436)
+|.++|..+-.+
T Consensus 341 eDeEiYke~~eI 352 (489)
T 4gq4_A 341 EDEEIYKEFFEV 352 (489)
T ss_dssp TCHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 566666655444
No 307
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.99 E-value=84 Score=22.70 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=9.9
Q ss_pred HHcCCHHHHHHHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al 259 (436)
-..|+|++|+.+|..++
T Consensus 27 D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 45566666666555544
No 308
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.65 E-value=1.5e+02 Score=28.43 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=47.7
Q ss_pred hhhhhhHhhhh---hhCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 013800 198 DDAGEVVDLIM---PNFDDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DP 263 (436)
Q Consensus 198 ~~~~~~lg~~~---~~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 263 (436)
+-+.+++|.+- -.-|+ ..++.+|.+++.. .-.+..-|..+|..+++.+++.+|+..+-.+-.. ..
T Consensus 277 PmALgnLgDLEe~~pt~gr-~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~r 355 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGR-PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR 355 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTC-CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCG
T ss_pred chhhcchhhHhhcCCCCCC-CCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 34555555432 22232 2477888888763 2345677888999999999999999988877543 23
Q ss_pred CCHHHHHHHH
Q 013800 264 GDGESWMQYA 273 (436)
Q Consensus 264 ~~~~~~~~la 273 (436)
+|.++|..+-
T Consensus 356 eDeEIYKEf~ 365 (550)
T 3u84_A 356 EDEEIYKEFF 365 (550)
T ss_dssp GGHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 4555554443
No 309
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=29.63 E-value=6.4e+02 Score=28.24 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 353 NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
++.+..+.....+-....++ |-.|++++.++++-.|. .+.+..++.++..+|- .--..+.++.+
T Consensus 1280 d~~d~k~~~~~~~~~~~~~~-~g~~~k~l~k~~~~k~~-~~~~~~~~~~~~~l~w-~h~~~~~~~~~ 1343 (1354)
T 3lxu_X 1280 DANDSKAIQFALWHAYAHGH-YGRMYKYVVKLIEEKRT-RDHFVELAAINGALGH-EHIRTVINRMM 1343 (1354)
T ss_dssp CTTSTTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHSC-HHHHHHHHHHH
T ss_pred ccCCceeehhHHHHHHHHHH-HHHHHHHHHHHHhcccc-HHHHHHHHHHHHHcCC-HHHHHHHHhhh
Confidence 34444444433333445677 88888888888887764 5667777777777764 33444444433
No 310
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=27.99 E-value=55 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...+|.=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 355677777778888888877777653
No 311
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.69 E-value=2.5e+02 Score=22.99 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
+.+......++...+. .+++..+.+.+. + .+..+......++...+. .+++..+.+.+.
T Consensus 126 ~~vr~~a~~aL~~~~~--~~~~~~L~~~l~-d-~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 126 WFVRIAAAFALGEIGD--ERAVEPLIKALK-D-EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHHHHCC--GGGHHHHHHHTT-C-SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHc-C-CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4444444444444444 234444444331 2 224444444444444443 334444444443
No 312
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.65 E-value=77 Score=24.44 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
+++|..+..++|.++ ..|+-++|+.+|++.+.
T Consensus 19 h~~AF~~Is~AL~~D-------------------------------------E~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTD-------------------------------------ELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHH-------------------------------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-------------------------------------hcCCHHHHHHHHHHHHH
No 313
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=26.52 E-value=1e+02 Score=21.97 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=10.0
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~ 260 (436)
-..|++++|+.+|..+++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 345666666665554443
No 314
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.46 E-value=40 Score=24.06 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=21.4
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHh
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDE 227 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~ 227 (436)
..+|.-+...|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 45666778889999999999998764
No 315
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.68 E-value=1.1e+02 Score=22.45 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
-.+.|+.++.+|++. -..|+|++|+.+|..+++
T Consensus 11 ~l~~Ai~lv~~Ave~---------------D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 11 DSTAAVAVLKRAVEL---------------DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HHhCCHHHHHHHHHHHHH
Confidence 345677777666554 345777777766555543
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.51 E-value=2.8e+02 Score=22.71 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=23.4
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 251 AEDYYNHATMA--DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 251 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
+.++|...... .-..+..|...|.++...+ ++.+|.++|+..++...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~-~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARE-NFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Confidence 34444444432 3334555555555544444 36666666666555543
No 317
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=25.38 E-value=95 Score=23.94 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.+.|+.++.+|++. -..|+|++|+.+|..+++
T Consensus 15 l~kAi~lv~~Ave~---------------D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQE---------------DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHH
Confidence 45677766666543 345777777776555543
No 318
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=25.30 E-value=2.2e+02 Score=21.48 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=28.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
..+..+|+|++|....+..- .++.--.++.+-++.|- .+++...+
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl-~s~le~rL 92 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGL-GSALESRL 92 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhccc-HHHHHHHH
Confidence 45667888888876554321 34455556667777777 66665555
No 319
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.09 E-value=4.1e+02 Score=24.97 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=55.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEY-----------------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-------D 262 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~-----------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~ 262 (436)
+.....+.++|++.+++....- .....+...++..|...|+.++|..+++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3345578889998888763311 001245667788889999999999999888653 2
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
|.....++.....++...+++..+....-..+.
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 222233333333444555568777666666654
No 320
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.79 E-value=2.3e+02 Score=20.73 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHH-----HHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADS-HVL-----AAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~-~~~-----~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
.|..++..|+ |-+|-+.++.+....|+.. ..+ ...|..+...|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~-~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGR-YYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCC-hHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4566667777 8888888888877775421 122 2223335566777 8888888776
No 321
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=22.74 E-value=2.2e+02 Score=21.48 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=27.3
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
..+..+|+|++|....+.. + .++.--.++.+-++.|- .+++...+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl-~s~le~rL 91 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGL-GAALDRRL 91 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhccc-HHHHHHHH
Confidence 4566778888776554332 1 34455556667777777 66665555
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.48 E-value=3.1e+02 Score=23.67 Aligned_cols=41 Identities=10% Similarity=0.243 Sum_probs=33.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
.++.+.|.|++|.+.+++.+..++.+-.....|..+-.+..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 77889999999999999999887777777777776655443
No 323
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=21.31 E-value=1.2e+02 Score=27.28 Aligned_cols=51 Identities=29% Similarity=0.307 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 284 HRALTYFERAALA-------APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 284 ~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+.|...|++|+++ .|.+|-- ..++.-+.- ..|.-+++.++|+...++|+..
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiR-LGLaLNfSV-----------------FyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLY-LATILNYTI-----------------LKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHH-HHHHHHHHH-----------------HHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHH-HHHHHHHHH-----------------HHHHHcCCHHHHHHHHHHHHhh
Confidence 5677888887653 4566533 222211111 3444689999999999998875
No 324
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=21.20 E-value=4.1e+02 Score=23.15 Aligned_cols=32 Identities=3% Similarity=-0.050 Sum_probs=26.1
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH 231 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 231 (436)
-...++.+..+.++|++...+.++.++.+++-
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eL 41 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEEL 41 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC
Confidence 34566778888899999999999999987753
No 325
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=20.10 E-value=3.3e+02 Score=25.69 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=26.8
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 342 AEEYFSRAILA-----NPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 342 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
++.+|.+|+.. ...+...|..+|-.+++.++ +.+|+..+..|-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~-~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKK-YYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcch-HHHHHHHHHHHH
Confidence 56666666654 23345556667777777766 777777666553
Done!