BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013801
(436 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis]
gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis]
Length = 458
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/419 (78%), Positives = 363/419 (86%), Gaps = 14/419 (3%)
Query: 22 LATIPSQS--PFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHIS 79
LA +P QS PFAT SLS SL +LP + FF QPKI++LFS P K ++P+QAS LTH+S
Sbjct: 24 LAIVPPQSSPPFATASLSLSLSTILPTH-FFNQPKITSLFSSAPTKARIPSQASALTHLS 82
Query: 80 LSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDN 139
LS S TL ++SFKST+SANPL + LSLGP RP DP+N A IRRASIVWFRNDLRVHDN
Sbjct: 83 LS-SQTLHHPRLSFKSTISANPLHNTLSLGPRRPSDPSNAAGIRRASIVWFRNDLRVHDN 141
Query: 140 ESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDL 199
E LN+ANNES+SVLPVYCFDPR+YGKSSSGFDKTGPYRASFLIESV+DLRKNLQ RGSDL
Sbjct: 142 ECLNSANNESMSVLPVYCFDPREYGKSSSGFDKTGPYRASFLIESVTDLRKNLQDRGSDL 201
Query: 200 VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLY 259
VVRVGKPETVLVELAKAIGADAVYAH+EVSHDEVK+E+KIEAAMKDEG+EVKYFWGSTLY
Sbjct: 202 VVRVGKPETVLVELAKAIGADAVYAHKEVSHDEVKAEDKIEAAMKDEGVEVKYFWGSTLY 261
Query: 260 HLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGL 319
H+DDLPFKL +MP+NYGGFREKV G+E+RKTI ALDQLKG PSRGDVEPG+IPSLLDLGL
Sbjct: 262 HVDDLPFKLEDMPSNYGGFREKVHGLEVRKTIAALDQLKGKPSRGDVEPGEIPSLLDLGL 321
Query: 320 SQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCK 378
+ +QGGKPAA SM GGETEALQRLKKFAAE QAQPPKG G+ DSIYGANFSCK
Sbjct: 322 NP----TQGGKPAATASMVGGETEALQRLKKFAAECQAQPPKG---GSQDSIYGANFSCK 374
Query: 379 ISPWLAMGCLSPRSMFDELKKTAT-SISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
ISPWL MGC+SPRSMFDELKKTAT +ISAASK NDG S G NWLMFELLWRDFFR
Sbjct: 375 ISPWLTMGCISPRSMFDELKKTATRTISAASKGNDGGS-PPDTGMNWLMFELLWRDFFR 432
>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
Length = 471
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 340/452 (75%), Positives = 380/452 (84%), Gaps = 23/452 (5%)
Query: 1 MDPNKQNLEN--PENHSNEE--QNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKIS 56
MDP+ QNLE PE+ S ++ Q LA + S SPFAT SLS SLP +LP + FF QPKIS
Sbjct: 1 MDPHLQNLETTTPESTSEDQNQQQQLAIV-SSSPFATASLSLSLPTILPTH-FFTQPKIS 58
Query: 57 TLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDP 116
+LFS P K K+PTQA++LTH+SL++S++ K+SFKST+SANPL +PL+LGP RP DP
Sbjct: 59 SLFSSPPTKAKIPTQATSLTHLSLTSSTSSP--KLSFKSTISANPLHTPLTLGPRRPSDP 116
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
+N A RRA IVWFRNDLRVHDNE LN+ANN+S+SVLPVYCFDPRDYGKSSSGFDKTGPY
Sbjct: 117 SNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKTGPY 176
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA+FLIESVSDLRKNLQARGSDLVVRVG+PETVLVELAKAIGADAVYAHREVSHDEVK+E
Sbjct: 177 RANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEVKAE 236
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ 296
EKIE MKDEG+EVKYFWGSTLYHLDDLPFKL +MP+NYGGF+EKV+G+EIRKTIE LDQ
Sbjct: 237 EKIEELMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQ 296
Query: 297 LKGLPSRGDVEPGDIPSLLDLGL----------SQSAAMSQGGKPAAN-SMKGGETEALQ 345
LKGLPSRGDVEPGDIP+LLDLGL S + SQ GK AAN SM GGETEALQ
Sbjct: 297 LKGLPSRGDVEPGDIPNLLDLGLNPAQGTCCIVSLNTCQSQDGKAAANASMVGGETEALQ 356
Query: 346 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SI 404
RL KFAAE QAQPPKG G+H+SIYGANFSCKISPWL MGC+S RSMFDELKKTAT +I
Sbjct: 357 RLNKFAAECQAQPPKG---GSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTI 413
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
SAAS N G S S GAG NWLMFEL+WRDFFR
Sbjct: 414 SAASNHNSGGSSSPGAGMNWLMFELMWRDFFR 445
>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
Length = 457
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 337/442 (76%), Positives = 379/442 (85%), Gaps = 17/442 (3%)
Query: 1 MDPNKQNLEN--PENHSNEE--QNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKIS 56
MDP+ QNLE PE+ S ++ Q LA + S SPFAT SLS SLP +LP + FF QPKIS
Sbjct: 1 MDPHLQNLETTTPESTSEDQNQQQQLAIV-SSSPFATASLSLSLPTILPTH-FFTQPKIS 58
Query: 57 TLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDP 116
+LFS P K K+PTQA++LTH+SL++S++ K+SFKST+SANPL +PL+LGP RP DP
Sbjct: 59 SLFSSPPTKAKIPTQATSLTHLSLTSSTSSP--KLSFKSTISANPLHTPLTLGPRRPSDP 116
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
+N A RRA IVWFRNDLRVHDNE LN+ANN+S+SVLPVYCFDPRDYGKSSSGFDKTGPY
Sbjct: 117 SNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKTGPY 176
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA+FLIESVSDLRKNLQARGSDLVVRVG+PETVLVELAKAIGADAVYAHREVSHDEVK+E
Sbjct: 177 RANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEVKAE 236
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ 296
EKIE MKDEG+EVKYFWGSTLYHLDDLPFKL +MP+NYGGF+EKV+G+EIRKTIE LDQ
Sbjct: 237 EKIEELMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQ 296
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQ 355
LKGLPSRGDVEPGDIP+LLDLGL+ +Q GK AAN SM GGETEALQRL KFAAE Q
Sbjct: 297 LKGLPSRGDVEPGDIPNLLDLGLNP----AQDGKAAANASMVGGETEALQRLNKFAAECQ 352
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SISAASKWNDGE 414
AQPPKG G+H+SIYGANFSCKISPWL MGC+S RSMFDELKKTAT ++SAAS N G
Sbjct: 353 AQPPKG---GSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTVSAASNHNSGG 409
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
S S GAG NWLMFEL+WRDFFR
Sbjct: 410 SSSPGAGMNWLMFELMWRDFFR 431
>gi|225437398|ref|XP_002270248.1| PREDICTED: blue-light photoreceptor PHR2 [Vitis vinifera]
Length = 454
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 317/438 (72%), Positives = 364/438 (83%), Gaps = 12/438 (2%)
Query: 1 MDPNKQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFS 60
MDPN Q LENPE S++EQ LA I T S+S SL VLP + F + PKIS+L +
Sbjct: 1 MDPNLQTLENPETQSSDEQTQLAIIAP----PTASISLSLSAVLPTH-FLLPPKISSLLA 55
Query: 61 HQPNKVKVPTQASTLTHISLSASSTLSPSKISFKST-LSANPLQSPLSLGPHRPLDPNNG 119
H P+KV++P+QA++L LS SS+L+ K FKST +S++PLQSPL LGP R DP+N
Sbjct: 56 HHPSKVRIPSQAASLA--HLSLSSSLNQPKSFFKSTPISSSPLQSPLFLGPRRSSDPSNA 113
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A IRR+ IVWFRNDLRVHDNE LN+A+NES+S+LPVYCFDPRDYGKSSSGFDKTGPYRAS
Sbjct: 114 AGIRRSCIVWFRNDLRVHDNECLNSASNESMSMLPVYCFDPRDYGKSSSGFDKTGPYRAS 173
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FLIESVSDLR+NLQ RGSDLVVR+GKPETVLVELAKA+GADA+YAHREVSHDEVK EEKI
Sbjct: 174 FLIESVSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKI 233
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
EAAMK+EG+E+KYFWGSTLYH+DDLPFK+ +MPTNYGGF+EKVKG+EIRKTI LDQL+G
Sbjct: 234 EAAMKEEGVELKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRG 293
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQAQP 358
LP+RGDVE G+IPSLLDLGLS SA + Q G AN S+ GGETEALQRLKKFAAE QAQP
Sbjct: 294 LPARGDVEAGEIPSLLDLGLSPSATLPQNGMSTANGSLVGGETEALQRLKKFAAECQAQP 353
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
PKG +DSIYGANFSCKISPWLAMGCLSPRSMFDE+KK+A+ +AS DG SG S
Sbjct: 354 PKG---AANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSKDGGSGQS 410
Query: 419 GAGSNWLMFELLWRDFFR 436
G NWLMFEL+WRDFFR
Sbjct: 411 DTGMNWLMFELMWRDFFR 428
>gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa]
gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 308/405 (76%), Positives = 342/405 (84%), Gaps = 13/405 (3%)
Query: 37 SFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKST 96
S SL +LP + F QPKIS LFS P K K+PTQA++LTH+SL SST SP K SFKST
Sbjct: 1 SLSLSTILPTH-FLTQPKISALFSSPPTKAKIPTQATSLTHLSL-FSSTSSP-KRSFKST 57
Query: 97 LSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVY 156
+SANPLQ+PL+LGP RP DP+N A RRA IVWFRNDLRVHDNE LN+A+N+S+SVLPVY
Sbjct: 58 ISANPLQTPLTLGPRRPSDPSNAAGTRRACIVWFRNDLRVHDNECLNSASNDSMSVLPVY 117
Query: 157 CFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
CFDPRDYGKSSSGFDKTGPYRA+FLIESVSDLRKNLQARGSDLVVRVG+PETVLVELAKA
Sbjct: 118 CFDPRDYGKSSSGFDKTGPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKA 177
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYG 276
IGADAVYAHREVSHDEVK+E+KIE MKDEG+EVKYFWGSTLYHLDDLPFKL +MP+NYG
Sbjct: 178 IGADAVYAHREVSHDEVKAEDKIEEVMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYG 237
Query: 277 GFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-S 335
GF+EKV+ +EIRKT+E LD+LKGLPSRGDVEPGDIP+LLDLGL+ +Q GK AN S
Sbjct: 238 GFKEKVQVLEIRKTVETLDELKGLPSRGDVEPGDIPNLLDLGLNP----AQDGKATANAS 293
Query: 336 MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 395
M GGE EALQRL+KFAAE QAQPPKG +G+HDSIYGANFSCKISPWL +GC+SPRSMFD
Sbjct: 294 MVGGEAEALQRLQKFAAECQAQPPKGT-NGSHDSIYGANFSCKISPWLTVGCISPRSMFD 352
Query: 396 ELKKTATSI----SAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
ELKKTA S G SGS G NWLMFELLWRDFFR
Sbjct: 353 ELKKTAARTISGASNCGGGGGGGSGSPDTGMNWLMFELLWRDFFR 397
>gi|449436489|ref|XP_004136025.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
gi|449498514|ref|XP_004160558.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
Length = 451
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 301/438 (68%), Positives = 358/438 (81%), Gaps = 15/438 (3%)
Query: 1 MDPNKQNLENPENHSNEEQNPLATIPSQS-PFATLSLSFSLPQVLPANTFFIQPKISTLF 59
MDPN LENPE +S+++Q P IP S P A SL+ SL +P+N F +QPK S LF
Sbjct: 1 MDPNSLILENPEPNSSDDQTP--AIPLHSTPLAVASLTLSLSTAIPSN-FLVQPKFSGLF 57
Query: 60 SHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNG 119
S QPNK +VPTQAS+L+ + +S SS L P KIS KS +SANPLQ PLSLGP RP +P+NG
Sbjct: 58 SRQPNKDEVPTQASSLSRLPISCSS-LCPPKISLKSNISANPLQIPLSLGPRRPSEPSNG 116
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A IRRA+IVWFRNDLR+ DNE LN+A+++S+SVLPVYCFDPRDYGKSSSGFDKTGP+RA+
Sbjct: 117 AGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSSGFDKTGPFRAA 176
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+IESVSDLRKNLQARGS+LVVR+GKPETVL ELAK IGADAVYAH EVSHDE+++EE+I
Sbjct: 177 FVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEMETEERI 236
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E+AMK+E +EVKYFWGSTLYH+DDLPFK+ +MP+++G FREKV+G+ +RKTIEALD++KG
Sbjct: 237 ESAMKEENVEVKYFWGSTLYHIDDLPFKMEDMPSSHGAFREKVQGLSVRKTIEALDKMKG 296
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQAQP 358
LPSRGDVEPGDIPSL DLGL+Q AMS+ G A N S GGETEAL RL+K+AAE +AQP
Sbjct: 297 LPSRGDVEPGDIPSLSDLGLNQPVAMSKEGWLAPNTSQVGGETEALHRLQKYAAECRAQP 356
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
PK +G SIYGA FS KISPWL MGC+SPRS+FDEL KT S+ ND G +
Sbjct: 357 PKATNNGVQSSIYGATFSNKISPWLTMGCISPRSVFDELNKT------VSRKND---GGN 407
Query: 419 GAGSNWLMFELLWRDFFR 436
G G+NWLMFELLWRDFFR
Sbjct: 408 GTGTNWLMFELLWRDFFR 425
>gi|449436487|ref|XP_004136024.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
gi|449498510|ref|XP_004160557.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
Length = 459
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 300/439 (68%), Positives = 359/439 (81%), Gaps = 9/439 (2%)
Query: 1 MDPNKQNLENPENHSNEEQNPLATIPSQS-PFATLSLSFSLPQVLPANTFFIQPKISTLF 59
MDPN LENPE +S+++Q P IP S P A SL+ SL +P+N F +QPK S LF
Sbjct: 1 MDPNSLILENPEPNSSDDQTP--AIPLHSTPLAVASLTLSLSTAIPSN-FLVQPKFSGLF 57
Query: 60 SHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNG 119
S QPNK +VPTQAS+L+ + +S SS L P KIS KS +SANPLQ PLSLGP RP +P+NG
Sbjct: 58 SRQPNKDEVPTQASSLSRLPISCSS-LCPPKISLKSNISANPLQIPLSLGPRRPSEPSNG 116
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A IRRA+IVWFRNDLR+ DNE LN+A+++S+SVLPVYCFDPRDYGKSSSGFDKTGP+RA+
Sbjct: 117 AGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSSGFDKTGPFRAA 176
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+IESVSDLRKNLQARGS+LVVR+GKPETVL ELAK IGADAVYAH EVSHDE+++EE+I
Sbjct: 177 FVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEMETEERI 236
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E+AMK+E +EVKYFWGSTLYH+DDLPFK+ +MP+++G FREKV+G+ +RKTIEALD++KG
Sbjct: 237 ESAMKEENVEVKYFWGSTLYHIDDLPFKMEDMPSSHGAFREKVQGLSVRKTIEALDKMKG 296
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQAQP 358
LPSRGDVEPGDIPSL DLGL+Q AMS+ G A N S GGETEAL RL+K+AAE +AQP
Sbjct: 297 LPSRGDVEPGDIPSLSDLGLNQPVAMSKEGWLAPNTSQVGGETEALHRLQKYAAECRAQP 356
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SISAASKWNDGESGS 417
PK +G SIYGA FS KISPWL MGC+SPRS+FDEL KT + IS + + G
Sbjct: 357 PKATNNGVQSSIYGATFSNKISPWLTMGCISPRSVFDELNKTVSRCISMPTPLKN--DGG 414
Query: 418 SGAGSNWLMFELLWRDFFR 436
+G G+NWLMFELLWRDFFR
Sbjct: 415 NGTGTNWLMFELLWRDFFR 433
>gi|356500345|ref|XP_003518993.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 428
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 303/411 (73%), Positives = 351/411 (85%), Gaps = 17/411 (4%)
Query: 28 QSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLS 87
++ A S+S SLP+VLP F QP + QP K+KVPTQAS+LTH+SLS +
Sbjct: 7 EAALAVASVSLSLPRVLP----FFQPT-----TPQPTKLKVPTQASSLTHLSLS-----T 52
Query: 88 PSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANN 147
PSK SFKST+S+ PL +PLSLGPHRP DP+N AA+RRA++VWFRNDLR+ DNE L ANN
Sbjct: 53 PSKTSFKSTISSTPLHAPLSLGPHRPRDPSNAAALRRAAVVWFRNDLRLLDNECLTAANN 112
Query: 148 ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPE 207
ES+SVLPVYCFDP DYGKS+SGFDKTGPYRA+FLI+SVSDLR+NLQARGSDLVVRVGKPE
Sbjct: 113 ESLSVLPVYCFDPADYGKSASGFDKTGPYRAAFLIDSVSDLRRNLQARGSDLVVRVGKPE 172
Query: 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK 267
VLVELAKA+GADAVYAHREVSHDE K+EE++EAAMK+E +EVKYFWGSTLYH+DDLPF+
Sbjct: 173 AVLVELAKAVGADAVYAHREVSHDEAKAEERVEAAMKEENVEVKYFWGSTLYHVDDLPFQ 232
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ 327
L +MP+NYGGFR++V+ +E+RKTIEALDQLKG+PSRGDVEPG+IPSL+DLGL+ SA MSQ
Sbjct: 233 LEDMPSNYGGFRDRVQKLEVRKTIEALDQLKGMPSRGDVEPGEIPSLMDLGLNPSATMSQ 292
Query: 328 GGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMG 386
GK AN SM GGETEALQ+LKKFAAE AQP KG KDG SIYGANFSCKISPWLAMG
Sbjct: 293 NGKCVANASMVGGETEALQKLKKFAAECAAQPHKGFKDGTQ-SIYGANFSCKISPWLAMG 351
Query: 387 CLSPRSMFDELKKTATS-ISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
CLSPR+M++ELKKTA ISA+S NDG +GSS G+NWLMFELLWRDFFR
Sbjct: 352 CLSPRTMYEELKKTAGRVISASSNRNDGGNGSSRTGTNWLMFELLWRDFFR 402
>gi|356535153|ref|XP_003536113.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 440
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 302/411 (73%), Positives = 353/411 (85%), Gaps = 8/411 (1%)
Query: 28 QSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLS 87
++ FA SLS SLP + P F+QPK + QP K+KVPTQAS+LTH+SLS ++T
Sbjct: 10 EAAFAVASLSLSLPTIFP----FVQPKNIPSTTLQPTKLKVPTQASSLTHLSLS-TTTPP 64
Query: 88 PSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANN 147
PSK SFKST+SANPL +PLSL PHRP DP+N AA+RRA++VWFRNDLR+ DNE L ANN
Sbjct: 65 PSKTSFKSTVSANPLHAPLSLAPHRPRDPSNAAALRRAAVVWFRNDLRLLDNECLTAANN 124
Query: 148 ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPE 207
+S+SVLPVYCFDP DYGKS+SGFDKTGPYRA+FLI+SVSDLR++LQARGSDLVVRVGKPE
Sbjct: 125 DSLSVLPVYCFDPSDYGKSASGFDKTGPYRAAFLIDSVSDLRRSLQARGSDLVVRVGKPE 184
Query: 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK 267
TVLVELAKA+GADAVYAHREVSHDE K+EEK+EAAMK+E +EVKYFWGSTLYH+DDLPF+
Sbjct: 185 TVLVELAKAVGADAVYAHREVSHDEAKAEEKVEAAMKEENVEVKYFWGSTLYHVDDLPFQ 244
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ 327
L +MP+NYGGFR++V+ +E+RKTIEALD LKG+PSRGD E G+IPSL+DLGL+ SA MSQ
Sbjct: 245 LEDMPSNYGGFRDRVQKLEVRKTIEALDHLKGMPSRGDFELGEIPSLMDLGLNPSATMSQ 304
Query: 328 GGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMG 386
GK AN SM GGETEALQRLKKFAAE AQP KG KDG SIYGANFSCKISPWLAMG
Sbjct: 305 DGKFGANASMIGGETEALQRLKKFAAECAAQPNKGFKDGTQ-SIYGANFSCKISPWLAMG 363
Query: 387 CLSPRSMFDELKKTAT-SISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
CLSPR+M++ELKKT + +ISA++ NDG +GSS G+NWLMFELLWRDFFR
Sbjct: 364 CLSPRTMYEELKKTTSRAISASADKNDGGNGSSRNGTNWLMFELLWRDFFR 414
>gi|357442473|ref|XP_003591514.1| DNA photolyase protein [Medicago truncatula]
gi|355480562|gb|AES61765.1| DNA photolyase protein [Medicago truncatula]
Length = 456
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 294/375 (78%), Positives = 329/375 (87%), Gaps = 5/375 (1%)
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFK-STLSANPLQSPLSLGPHRPLDPNNGAAIR 123
K+KVPTQAS+LTH+SLS + SPS +FK S+ S+NPL+SPLSL PHRP DP++ AA+R
Sbjct: 58 KLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSSNPLKSPLSLIPHRPNDPSSAAALR 117
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFRNDLRVHDNE+LNTANNES+SVLPVYCFDP DYGKSSSGFDKTGPYRASFLIE
Sbjct: 118 RTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIE 177
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SVSDLRKNL+ARGSDLVVRVGKPETVLVELAK IGADAVY HREVSHDEVK EEKIE M
Sbjct: 178 SVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKM 237
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
K+E +EVKYFWGSTLYH++DLPF L +MP+NYGGFR++V+ +EIRKTIEALDQLKGLPSR
Sbjct: 238 KEENVEVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPSR 297
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGN 362
GDV+ GDIP+L+DLGL+ SA MSQ GK N SM GGETEALQRLK+FAAE +AQ KG
Sbjct: 298 GDVQLGDIPTLMDLGLNPSATMSQDGKQVPNSSMTGGETEALQRLKRFAAECEAQSNKGF 357
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW-NDGESGSSGAG 421
KDG DSIYGANFSCKISPWLAMGCLSPR+MFDELKKTA+S +AS NDG GSS G
Sbjct: 358 KDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDG--GSSKTG 415
Query: 422 SNWLMFELLWRDFFR 436
+NWLMFELLWRDFFR
Sbjct: 416 TNWLMFELLWRDFFR 430
>gi|388494660|gb|AFK35396.1| unknown [Medicago truncatula]
Length = 456
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/375 (78%), Positives = 329/375 (87%), Gaps = 5/375 (1%)
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFK-STLSANPLQSPLSLGPHRPLDPNNGAAIR 123
K+KVPTQAS+LTH+SLS + SPS +FK S+ S+NPL+SPLSL PHRP DP++ AA+R
Sbjct: 58 KLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSSNPLKSPLSLIPHRPNDPSSAAALR 117
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFRNDLRVHDNE+LNTANNES+SVLPVYCFDP DYGKSSSGFDKTGPYRASFLIE
Sbjct: 118 RTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIE 177
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+SDLRKNL+ARGSDLVVRVGKPETVLVELAK IGADAVY HREVSHDEVK EEKIE M
Sbjct: 178 SISDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKM 237
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
K+E +EVKYFWGSTLYH++DLPF L +MP+NYGGFR++V+ +EIRKTIEALDQLKGLPSR
Sbjct: 238 KEENVEVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPSR 297
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGN 362
GDV+ GDIP+L+DLGL+ SA MSQ GK N SM GGETEALQRLK+FAAE +AQ KG
Sbjct: 298 GDVQLGDIPTLMDLGLNPSAIMSQDGKQVPNSSMTGGETEALQRLKRFAAECEAQSNKGF 357
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW-NDGESGSSGAG 421
KDG DSIYGANFSCKISPWLAMGCLSPR+MFDELKKTA+S +AS NDG GSS G
Sbjct: 358 KDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDG--GSSKTG 415
Query: 422 SNWLMFELLWRDFFR 436
+NWLMFELLWRDFFR
Sbjct: 416 TNWLMFELLWRDFFR 430
>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
Length = 448
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 305/439 (69%), Positives = 359/439 (81%), Gaps = 20/439 (4%)
Query: 1 MDPN--KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTL 58
MD N ++NL NPE S EE+NPLA I S P A+LSL+ + P +T F++ L
Sbjct: 1 MDSNLEEKNL-NPETKSAEEENPLAIIHSSLPIASLSLT-----LFPTSTQFLK-----L 49
Query: 59 FSHQPNKVKVPTQASTLTHISLSASSTLSPS-KISFKSTLSANPLQSPLSLGPHRPLDPN 117
FSH PNKVK+PTQAS+LTH+SLS+S +ISFKST++ANPL SPLS+ P RP+DP+
Sbjct: 50 FSHHPNKVKIPTQASSLTHLSLSSSPVSPLPSRISFKSTIAANPLHSPLSIVPRRPVDPS 109
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+ AA+RRA++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+R
Sbjct: 110 SAAALRRAAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFR 169
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
A FLIESVS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E
Sbjct: 170 AQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEG 229
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
KIE+AMK+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV +EIRKTI ALDQL
Sbjct: 230 KIESAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVHKLEIRKTIAALDQL 289
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
K LPSRGDVE GDIPSLLDLG+S +A SQ GKP +M GGETEAL RLK FAA+ QA+
Sbjct: 290 KSLPSRGDVELGDIPSLLDLGISPTARTSQEGKP---TMVGGETEALTRLKSFAADCQAR 346
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
KGN+ G ++S++GANFSCKISPWLAMG +SPRSMFDELKKT ISA++ +G
Sbjct: 347 LSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKT---ISASTTTTTPRNGP 403
Query: 418 SGAGSNWLMFELLWRDFFR 436
G NWLM+ELLWRDFFR
Sbjct: 404 GDTGLNWLMYELLWRDFFR 422
>gi|15226633|ref|NP_182281.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
gi|116248577|sp|Q8LB72.2|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
Length = 447
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 299/432 (69%), Positives = 358/432 (82%), Gaps = 17/432 (3%)
Query: 5 KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPN 64
++NL NPE S EEQNPLA S P A+LSL+ + P++T F++ LF+H PN
Sbjct: 7 EENL-NPETKSAEEQNPLAIFHSSLPIASLSLT-----LFPSSTQFLK-----LFAHHPN 55
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRR 124
KVK+PTQAS+LTH+SLS+ S S+ISFKST++ANPLQSPLS+ P RP+DP++ AA+RR
Sbjct: 56 KVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRR 115
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIES
Sbjct: 116 AAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIES 175
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
VS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E KIE AMK
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK 235
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV+ +EIRKTI ALDQLK LPSRG
Sbjct: 236 EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSRG 295
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
DVE GDIPSLLDLG+S + SQ GKP +M GGETEAL RLK FAA+ QA+ KGN+
Sbjct: 296 DVELGDIPSLLDLGISPTPRTSQEGKP---TMVGGETEALTRLKSFAADCQARLSKGNQK 352
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G ++S++GANFSCKISPWLAMG +SPRSMFDELKKT ++ + ++ +G + G NW
Sbjct: 353 GGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDT---GLNW 409
Query: 425 LMFELLWRDFFR 436
LM+ELLWRDFFR
Sbjct: 410 LMYELLWRDFFR 421
>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 298/432 (68%), Positives = 357/432 (82%), Gaps = 17/432 (3%)
Query: 5 KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPN 64
++NL NPE S EEQNPLA S P A+LSL+ + P++T F++ LF+H PN
Sbjct: 7 EENL-NPETKSAEEQNPLAIFHSSLPIASLSLT-----LFPSSTQFLK-----LFAHHPN 55
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRR 124
KVK+PTQAS+LTH+SLS+ S S+ISFKST++ANPLQSPLS+ P RP+DP++ AA+RR
Sbjct: 56 KVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRR 115
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIES
Sbjct: 116 AAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIES 175
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
VS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E KIE AMK
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK 235
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV+ +EIRKTI ALDQLK LPSRG
Sbjct: 236 EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSRG 295
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
DVE GDIPSLLDLG+S + SQ GKP +M GGETEAL RLK FAA+ Q + KGN+
Sbjct: 296 DVELGDIPSLLDLGISPTPRTSQEGKP---TMVGGETEALTRLKSFAADCQXRXSKGNQK 352
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G ++S++GANFSCKISPWLAMG +SPRSMFDELKKT ++ + ++ +G + G NW
Sbjct: 353 GGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDT---GLNW 409
Query: 425 LMFELLWRDFFR 436
LM+ELLWRDFFR
Sbjct: 410 LMYELLWRDFFR 421
>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
Length = 526
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/323 (66%), Positives = 272/323 (84%), Gaps = 3/323 (0%)
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
DP+N AA+R+A+IVWFRNDLRVHDNE+L++AN E++SVLPVYCFDPRDYGKSSSGFDKTG
Sbjct: 179 DPSNAAALRKAAIVWFRNDLRVHDNEALSSANKEALSVLPVYCFDPRDYGKSSSGFDKTG 238
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
P+RA+FL+E V++LR NL+ RGSDLVVR+G+PE VLVELAK+IGADA+YAH+EVSH+E+
Sbjct: 239 PFRATFLLECVANLRANLRERGSDLVVRIGRPEEVLVELAKSIGADALYAHQEVSHEEIA 298
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL 294
+EEKI++++++EG+E K+FWGSTLYH +DLPFKL +MP+NYGGFRE+V+ + +R+ I+
Sbjct: 299 TEEKIKSSLEEEGVETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQRLSVRQIIKDP 358
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAE 353
+QLKGLP+RGDVEPG +PSLLDLGL+ + Q GK A N S+ GGE+EALQRLK+FA E
Sbjct: 359 EQLKGLPTRGDVEPGKVPSLLDLGLNPN--FGQDGKTAVNASLTGGESEALQRLKRFAVE 416
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ QP K KDG+ +S+YGANFSCKISPWLAMGCLSPR MF+ELKK+ ++S
Sbjct: 417 CREQPNKLGKDGSGESLYGANFSCKISPWLAMGCLSPRYMFEELKKSEKISISSSLGKSS 476
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
+ S G NWL FELLWRDFFR
Sbjct: 477 GADSGQGGLNWLKFELLWRDFFR 499
>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 448
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/413 (56%), Positives = 297/413 (71%), Gaps = 18/413 (4%)
Query: 30 PFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPS 89
PFA+ SLS SL P + P+ V +PTQ STL + L S+ S
Sbjct: 20 PFASFSLSLSL----------RTPTAHATLASVPSAVHLPTQISTLA-VCLHPSAASSSP 68
Query: 90 KISFKSTLSANPLQSPL---SLGPHRPLDPNN-GAAIRRASIVWFRNDLRVHDNESLNTA 145
+ + + +A L SPL S G R GAA RR ++VWFR DLR+HD+E L+ A
Sbjct: 69 RRATRLNAAAASLLSPLTASSPGLSRSFPSGAPGAAGRRRTLVWFRADLRLHDHEPLHAA 128
Query: 146 NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGK 205
S S+LPV+ FDPRD+GKS SGFD+TGPYRASFL++SV+DLR++L+ARG DLVVRVG+
Sbjct: 129 VGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLLDSVADLRRSLRARGGDLVVRVGR 188
Query: 206 PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP 265
PE V+ ELA+A GA+AVYAH EVS DE ++EEK+ A++ EG+EVKYFWGSTLYHLDDLP
Sbjct: 189 PEVVIPELARAAGAEAVYAHGEVSRDECRTEEKVSKAIEKEGVEVKYFWGSTLYHLDDLP 248
Query: 266 FKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAM 325
F+L +MP++YGGFRE VKG+E+RK ++A +++K +P + +EPGDIP+L +LGLS AM
Sbjct: 249 FRLNDMPSSYGGFREAVKGLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAM 308
Query: 326 SQGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLA 384
+Q K AA S + GGE EAL+RLKKFAAE QP K KD +SIYGANFSCKISPWLA
Sbjct: 309 AQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLA 368
Query: 385 MGCLSPRSMFDELKKTAT-SISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
GCLSPR M++ELKK A +I + S DG+ G+S AG+NWLMFELLWRDFFR
Sbjct: 369 TGCLSPRFMYEELKKHAIRAIPSGSTPKDGD-GTSDAGTNWLMFELLWRDFFR 420
>gi|357112286|ref|XP_003557940.1| PREDICTED: blue-light photoreceptor PHR2-like [Brachypodium
distachyon]
Length = 447
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/401 (55%), Positives = 287/401 (71%), Gaps = 31/401 (7%)
Query: 53 PKISTLFSHQPNKVKVPTQASTL----------------THISLSASSTLSPSKISFKST 96
P I + P+ + +PTQ STL T ++ +A+S LSP S S
Sbjct: 33 PTIPATLASVPSAIHLPTQVSTLAVCLHPSAASSSPRRSTRLNAAAASLLSPFPASTPSL 92
Query: 97 LSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVY 156
+ P +P GAA RR ++VWFR DLR+HD+E L+ A S S+LPV+
Sbjct: 93 SRSFPSGAP-------------GAAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVF 139
Query: 157 CFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVVRVG+PE V+ ELA+A
Sbjct: 140 VFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARA 199
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYG 276
GA+AVYAH EVS DE ++E+K+ A+K EG+EVKYFWGSTLYH+DDLPF+L +MP+NYG
Sbjct: 200 AGAEAVYAHGEVSRDECRTEDKVSQAIKKEGVEVKYFWGSTLYHMDDLPFRLEDMPSNYG 259
Query: 277 GFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS- 335
GFRE VKG+E+RK ++A +++K +P + +EPGDIP+L +LGLS AM+Q K A S
Sbjct: 260 GFREAVKGLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAVGST 319
Query: 336 MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 395
+ GGE EAL+RLKKFAAE QP K KD DSIYGANFSCKISPWLA GCLSPR M++
Sbjct: 320 LIGGEAEALERLKKFAAECCMQPNKSAKDSTRDSIYGANFSCKISPWLATGCLSPRFMYE 379
Query: 396 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
ELKKT +I + S +G+ G+S AG+NWLMFELLWRDFFR
Sbjct: 380 ELKKTIRAIPSGSAPKNGD-GTSDAGTNWLMFELLWRDFFR 419
>gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
Length = 447
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/416 (54%), Positives = 293/416 (70%), Gaps = 17/416 (4%)
Query: 26 PSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASST 85
PS PFA+ SL+ S+ P TL S P+ + +PTQ STL + L S+
Sbjct: 18 PSLLPFASFSLALSI----------RAPATPTLAS-VPSTIHLPTQISTLA-VCLHPSAA 65
Query: 86 LSPSKISFKSTLSANPLQSPL---SLGPHRPLDPNN-GAAIRRASIVWFRNDLRVHDNES 141
PS+ + + + + +PL + G R AA RR ++VWFR DLR+HD+E
Sbjct: 66 QPPSRRPTRLNSATSSVIAPLPSSTPGLSRSFPSGAPAAAGRRRTLVWFRADLRLHDHEP 125
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVV
Sbjct: 126 FHAAAGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVV 185
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
RVG+PE V+ ELA+A GA+AVYAH EVS DEV++EE+++ A++ EGI VKYFWGSTLYH+
Sbjct: 186 RVGRPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQKAVEKEGINVKYFWGSTLYHV 245
Query: 262 DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ 321
+DLPF L +MP+NYGGFRE VKG+E+RK +EA +++K +P + +EPGDIP+L +LGL+
Sbjct: 246 EDLPFHLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTA 305
Query: 322 SAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKIS 380
AM+Q KPA S + GGETEAL+RLKKFA E QP K +K DSIYGANFSCKIS
Sbjct: 306 PPAMAQDSKPAVGSTLIGGETEALERLKKFAVECSMQPNKADKSNTQDSIYGANFSCKIS 365
Query: 381 PWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
PWLA GCLSPR M++ELKK AT G+S AG+NWLMFELLWRDFFR
Sbjct: 366 PWLATGCLSPRFMYEELKKHATRAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFR 421
>gi|212275814|ref|NP_001131008.1| uncharacterized LOC100192113 [Zea mays]
gi|194690696|gb|ACF79432.1| unknown [Zea mays]
gi|194701496|gb|ACF84832.1| unknown [Zea mays]
gi|414866740|tpg|DAA45297.1| TPA: photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 294/416 (70%), Gaps = 17/416 (4%)
Query: 26 PSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLT---HISLSA 82
PS PFA+ SL S+ P TL S P+ + +PTQ STL H S +
Sbjct: 17 PSLLPFASFSLGLSI----------RAPATPTLAS-VPSTLHLPTQISTLAVCLHPSAAQ 65
Query: 83 SSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNN-GAAIRRASIVWFRNDLRVHDNES 141
S+ ++++ ++ PL S + G R AA RR ++VWFR DLR+HD+E
Sbjct: 66 PSSRRTTRLNSATSSVIAPLPSS-TPGLSRSFPSGAPAAAGRRRTLVWFRADLRLHDHEP 124
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVV
Sbjct: 125 FHAAAGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVV 184
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
RVG+PE V+ ELA+A GA+AVYAH EVS DEV++EE+++ A++ EGI VKYFWGSTLYH+
Sbjct: 185 RVGRPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQKAVEKEGINVKYFWGSTLYHV 244
Query: 262 DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ 321
+DLPF+L +MP+NYGGFRE VKG+E+RK +EA +++K +P + +EPGDIP+L +LGL+
Sbjct: 245 EDLPFRLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTA 304
Query: 322 SAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKIS 380
AMSQ KPA S + GGETEAL+RLKKFAAE QP K +K DSIYGANFSCKIS
Sbjct: 305 PPAMSQDSKPAVGSTLIGGETEALERLKKFAAECSMQPNKVDKSNTQDSIYGANFSCKIS 364
Query: 381 PWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
PWLA GCLSPR M++ELKK AT G+S AG+NWLMFELLWRDFFR
Sbjct: 365 PWLATGCLSPRFMYEELKKHATKAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFR 420
>gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 293/416 (70%), Gaps = 17/416 (4%)
Query: 26 PSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLT---HISLSA 82
PS PFA+ SL S+ P TL S P+ + +PTQ STL H S +
Sbjct: 17 PSLLPFASFSLGLSI----------RAPATPTLAS-VPSTLHLPTQISTLAVCLHPSAAQ 65
Query: 83 SSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNN-GAAIRRASIVWFRNDLRVHDNES 141
S+ ++++ ++ PL S + G R AA RR ++VWFR DLR+HD+E
Sbjct: 66 PSSRRTTRLNSATSSVIAPLPSS-TPGLSRSFPSGAPAAAGRRRTLVWFRADLRLHDHEP 124
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVV
Sbjct: 125 FHAAAGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVV 184
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
RVG PE V+ ELA+A GA+AVYAH EVS DEV++EE+++ A++ EGI VKYFWGSTLYH+
Sbjct: 185 RVGMPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQKAVEKEGINVKYFWGSTLYHV 244
Query: 262 DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ 321
+DLPF+L +MP+NYGGFRE VKG+E+RK +EA +++K +P + +EPGDIP+L +LGL+
Sbjct: 245 EDLPFRLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTA 304
Query: 322 SAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKIS 380
AMSQ KPA S + GGETEAL+RLKKFAAE QP K +K DSIYGANFSCKIS
Sbjct: 305 PPAMSQDSKPAVGSTLIGGETEALERLKKFAAECSMQPNKVDKSNTQDSIYGANFSCKIS 364
Query: 381 PWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
PWLA GCLSPR M++ELKK AT G+S AG+NWLMFELLWRDFFR
Sbjct: 365 PWLATGCLSPRFMYEELKKHATKAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFR 420
>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
sativa Japonica Group]
gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
Length = 459
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/319 (63%), Positives = 258/319 (80%), Gaps = 3/319 (0%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA RR ++VWFR DLR+HD+E L+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA
Sbjct: 114 AAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRAG 173
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL++SV+DLR+ L+ARG DLVVRVG+PE V+ ELA+A GA+AV+AH EVS DE ++EEK+
Sbjct: 174 FLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKV 233
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
A++ EGIEVKYFWGSTLYHLDDLPF+L +MP+NYGGFRE VKG+++RK ++A +++K
Sbjct: 234 SKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKC 293
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQAQP 358
+P + +EPG+IP+L +LGL+ AM+ G K A S + GGE EAL+RLKKFA+E QP
Sbjct: 294 VPMKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASECCMQP 353
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SISAASKWNDGESGS 417
KG+KD DSIYGANFSCKISPWLA GCLSPR M++ELKK A+ +I + S +G+ G+
Sbjct: 354 NKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKNGD-GT 412
Query: 418 SGAGSNWLMFELLWRDFFR 436
S AG+NWLMFELLWRDFFR
Sbjct: 413 SDAGTNWLMFELLWRDFFR 431
>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
Length = 451
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/319 (63%), Positives = 258/319 (80%), Gaps = 3/319 (0%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA RR ++VWFR DLR+HD+E L+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA
Sbjct: 106 AAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRAG 165
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL++SV+DLR+ L+ARG DLVVRVG+PE V+ ELA+A GA+AV+AH EVS DE ++EEK+
Sbjct: 166 FLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKV 225
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
A++ EGIEVKYFWGSTLYHLDDLPF+L +MP+NYGGFRE VKG+++RK ++A +++K
Sbjct: 226 SKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKC 285
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQAQP 358
+P + +EPG+IP+L +LGL+ AM+ G K A S + GGE EAL+RLKKFA+E QP
Sbjct: 286 VPMKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASECCMQP 345
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SISAASKWNDGESGS 417
KG+KD DSIYGANFSCKISPWLA GCLSPR M++ELKK A+ +I + S +G+ G+
Sbjct: 346 NKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKNGD-GT 404
Query: 418 SGAGSNWLMFELLWRDFFR 436
S AG+NWLMFELLWRDFFR
Sbjct: 405 SDAGTNWLMFELLWRDFFR 423
>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/400 (56%), Positives = 288/400 (72%), Gaps = 41/400 (10%)
Query: 60 SHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKST--LSANPLQSPLSLGPHRPLDPN 117
SH P VP AS+ ++L +P +S KS +SA P L GP DP
Sbjct: 119 SHSP----VPVMASSKVQVALDIP-VATPITVSKKSANYVSAFPEYEKLR-GPDFK-DPA 171
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
NG +RRASIVWFRNDLRVHDNE+L +AN +S+S+LPVYCFDP+DYGKSSSGFDKTGPYR
Sbjct: 172 NGCGLRRASIVWFRNDLRVHDNEALVSANRDSLSILPVYCFDPKDYGKSSSGFDKTGPYR 231
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
A+FL+E V++LR +L+ RGSDL+VRVG PE VLV+LAK++GA+A+Y H+EV+++E+++EE
Sbjct: 232 ANFLLECVANLRSSLRERGSDLIVRVGSPEAVLVDLAKSVGAEALYVHQEVTYEELQAEE 291
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
K+ AA++++GIE KYFWGSTL+HL+DLPFKL +MP+NYGGFREKV+ V IR TIEA QL
Sbjct: 292 KVAAALQEKGIETKYFWGSTLFHLEDLPFKLQDMPSNYGGFREKVQNVAIRDTIEAPQQL 351
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGET-----------EALQR 346
KGLP+ G+V+PG IPS+ LGL+ PA N KG T EALQR
Sbjct: 352 KGLPACGNVKPGSIPSIEVLGLN----------PATNLRKGSVTVGGDGLLGGEEEALQR 401
Query: 347 LKKFAAEYQAQ-----PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTA 401
L+KFA E ++Q K + + DS+YGANFSCKISPWL MGCLSPR MF++LKK+A
Sbjct: 402 LQKFALEARSQTSNLKASKSQSESSGDSLYGANFSCKISPWLTMGCLSPRRMFEDLKKSA 461
Query: 402 TSISAASKWNDGESGSSGAGS-----NWLMFELLWRDFFR 436
+S SA + + +SGAGS NWL+FELLWRDFFR
Sbjct: 462 SSASAGAM-SALAVKASGAGSDDNGLNWLVFELLWRDFFR 500
>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
Length = 345
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/322 (62%), Positives = 250/322 (77%), Gaps = 10/322 (3%)
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
+P GA +RRASIVWFRNDLRVHDNE+L AN ES+SV+PVYCFDP+DYGKS+SGFDKTG
Sbjct: 11 NPAAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSASGFDKTG 70
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
PYRA FL+E V++LR NL+ RGS+LVVR+G P VL +AKA+GAD +YAH+EVS +E+
Sbjct: 71 PYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELG 130
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL 294
E+K+ +A+KD+ ++VK+FWGSTL+H+DDLPFK+ +MP+NYGGFR+KVK V++R EA
Sbjct: 131 MEDKVTSALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAP 190
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
QLKGLPS+GDV+ GDIPSL +LGLS +S G+ N M GGE EAL+RLK F+
Sbjct: 191 KQLKGLPSQGDVKAGDIPSLQELGLS---PVSAAGQHKRNRMIGGEVEALKRLKSFS--L 245
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ PP +K G +SIYGANFS KISPWLAMGCLSPR MF++LKKT + S
Sbjct: 246 VSPPP--SKGGKENSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSVV---A 300
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
S S +G WL+FELLWRDFFR
Sbjct: 301 STSGDSGMQWLVFELLWRDFFR 322
>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
Length = 345
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/322 (62%), Positives = 250/322 (77%), Gaps = 10/322 (3%)
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
+P GA +RRASIVWFRNDLRVHDNE+L AN ES+SV+PVYCFDP+DYGKS+SGFDKTG
Sbjct: 11 NPAAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSASGFDKTG 70
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
PYRA FL+E V++LR NL+ RGS+LVVR+G P VL +AKA+GAD +YAH+EVS +E+
Sbjct: 71 PYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELG 130
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL 294
E+K+ +A+KD+ ++VK+FWGSTL+H+DDLPFK+ +MP+NYGGFR+KVK V++R EA
Sbjct: 131 MEDKVTSALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAP 190
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
QLKGLPS+GDV+ GDIPSL +LGLS +S G+ N M GGE EAL+RLK F+
Sbjct: 191 KQLKGLPSQGDVKAGDIPSLQELGLS---PVSAAGQHKRNRMIGGEVEALKRLKSFS--L 245
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ PP +K G +SIYGANFS KISPWLAMGCLSPR MF++LKKT + S
Sbjct: 246 VSPPP--SKGGKENSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSLV---A 300
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
S S +G WL+FELLWRDFFR
Sbjct: 301 STSGDSGMQWLVFELLWRDFFR 322
>gi|413955779|gb|AFW88428.1| hypothetical protein ZEAMMB73_274298 [Zea mays]
Length = 396
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/382 (53%), Positives = 271/382 (70%), Gaps = 17/382 (4%)
Query: 26 PSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLT---HISLSA 82
PS PFA+ S + S+ P TL S P+ + +PTQ STL H S +
Sbjct: 17 PSLLPFASFSFALSI----------RAPATPTLAS-VPSTIHLPTQISTLAVCLHPSAAQ 65
Query: 83 SSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAI-RRASIVWFRNDLRVHDNES 141
P++++ + +PL S + G R AA RR ++VWFR DLR+HD+E
Sbjct: 66 PLPRRPTRLNSATYSVISPLPSS-TPGLSRSFPSGAPAASGRRRTLVWFRADLRLHDHEP 124
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVV
Sbjct: 125 FHAAAGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVV 184
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
RVG+PE V+ ELA+A GA+AVYAH EVS DEV++EE+++ A++ EGI VKYFWGSTLYH+
Sbjct: 185 RVGRPEVVIPELARAAGAEAVYAHGEVSRDEVRTEERVQKAVEKEGINVKYFWGSTLYHV 244
Query: 262 DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ 321
+DLPF+L +MP+NYGGFRE VK +++RK +EA +++K +P + +EPGDIP+L +LGL+
Sbjct: 245 EDLPFRLDDMPSNYGGFREAVKRLDVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTA 304
Query: 322 SAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKIS 380
AM+Q KPA S + GGET AL+RLKKFAAE QP K +K DSIYGANFSCKIS
Sbjct: 305 PPAMAQDSKPAVGSTLIGGETGALERLKKFAAECSMQPNKADKSNTQDSIYGANFSCKIS 364
Query: 381 PWLAMGCLSPRSMFDELKKTAT 402
PWLA GCLSPR M++ELKK AT
Sbjct: 365 PWLATGCLSPRFMYEELKKHAT 386
>gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
Length = 435
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/392 (48%), Positives = 265/392 (67%), Gaps = 44/392 (11%)
Query: 87 SPSKISFKST--LSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNT 144
+P+ +S KS +SA P L GP +P++ A +RRASIVWFRNDLR+HDNE+L +
Sbjct: 17 TPATVSKKSENYVSAFPEYQSLR-GPEFK-NPSSAAGLRRASIVWFRNDLRLHDNEALVS 74
Query: 145 ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204
A+ +S+S+LPVYCFDPRDYG SS G DK GPYR FL E V++LR +L+ RGSDL+VR+G
Sbjct: 75 ASRDSLSILPVYCFDPRDYGNSSLGIDKNGPYRVKFLFECVANLRSSLRERGSDLIVRIG 134
Query: 205 KPETVLVELAKAIGADAVYAHREVSHDEVK------------------------------ 234
KPE VL++LAK++GA+++YAH+EV++ E++
Sbjct: 135 KPEEVLLDLAKSVGAESLYAHQEVAYGELQEGDFVAISSNSYTPWLSHKGVAVKRSWNAL 194
Query: 235 ------SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++EK+ AA +D G+E K+FWG TL HL+DLPF+L +MP+NYGGFRE V+ + +R
Sbjct: 195 NRGPFQAQEKVAAAFQDNGVETKFFWGGTLVHLEDLPFELDDMPSNYGGFREMVQNLAVR 254
Query: 289 KTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS-MKGGETEALQRL 347
TIEAL +LKGLP+ G++EPG IP L +LGL+ +A M Q + + + + GGE EAL++L
Sbjct: 255 STIEALQELKGLPACGNIEPGRIPFLQELGLNPAADMRQEIQTSGGAVLMGGEDEALKKL 314
Query: 348 KKFAAEYQAQPPKGNK-DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
++ E + K + + + DS+YGANFSCKISPWLA+GCLSPR MF++LKK+ +S
Sbjct: 315 DRYVLETSSSIAKNKQSETSADSLYGANFSCKISPWLALGCLSPRRMFEDLKKSRSSAGV 374
Query: 407 ASKW--NDGESGSSGAGSNWLMFELLWRDFFR 436
N +G+ NW++FELLWRDFFR
Sbjct: 375 MPTLPVNTLGTGNEDHRLNWVLFELLWRDFFR 406
>gi|147791052|emb|CAN68022.1| hypothetical protein VITISV_003623 [Vitis vinifera]
Length = 212
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/197 (85%), Positives = 187/197 (94%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
IRR+ VWFRNDLRVHDNE LN+A+NES+S+LPVYCFDPRDYGKSSSGFDKTGPYRASFL
Sbjct: 1 IRRSCXVWFRNDLRVHDNECLNSASNESMSMLPVYCFDPRDYGKSSSGFDKTGPYRASFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
IESVSDLR+NLQ RGSDLVVR+GKPETVLVELAKA+GADA+YAHREVSHDEVK EEKIEA
Sbjct: 61 IESVSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEA 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
AMK+EG+E KYFWGSTLYH+DDLPFK+ +MPTNYGGF+EKVKG+EIRKTI LDQL+GLP
Sbjct: 121 AMKEEGVEXKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRGLP 180
Query: 302 SRGDVEPGDIPSLLDLG 318
+RGDVE G+IPSLLDLG
Sbjct: 181 ARGDVEAGEIPSLLDLG 197
>gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum]
Length = 189
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 166/189 (87%), Positives = 183/189 (96%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFRNDLRVHDNE LN A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DL
Sbjct: 1 WFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADL 60
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
RKNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+
Sbjct: 61 RKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGL 120
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
EVKYFWGSTLYH+DDLPFKL +MPTNYGGFREKV+G+E+RKTIEALDQLKGLP+RGDVEP
Sbjct: 121 EVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLKGLPARGDVEP 180
Query: 309 GDIPSLLDL 317
G+IPSL+DL
Sbjct: 181 GEIPSLVDL 189
>gi|92429526|gb|ABD93507.2| DNA photolyase protein [Solanum melongena]
Length = 187
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 164/187 (87%), Positives = 182/187 (97%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FRNDLRVHDNE LN ANNES+SVLPVYCFDPRDYGKSSSGFDKTGPYRA+FLIESV+DLR
Sbjct: 1 FRNDLRVHDNECLNAANNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVADLR 60
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
KNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+E
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLE 120
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPG 309
VKYFWGSTLYH+DDLPFKL EMPTNYGGFREKV+G+EIRKT+EALDQ++GLP+RGDVEPG
Sbjct: 121 VKYFWGSTLYHIDDLPFKLEEMPTNYGGFREKVQGLEIRKTVEALDQMRGLPARGDVEPG 180
Query: 310 DIPSLLD 316
+IPSL+D
Sbjct: 181 EIPSLVD 187
>gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum]
Length = 189
Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 164/189 (86%), Positives = 183/189 (96%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFRNDLRVHDNE LN A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLI+SV+DL
Sbjct: 1 WFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADL 60
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
RKNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+
Sbjct: 61 RKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGL 120
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
EVKYFWGSTLYH+DDLPFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEP
Sbjct: 121 EVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEP 180
Query: 309 GDIPSLLDL 317
G+IPSL+DL
Sbjct: 181 GEIPSLVDL 189
>gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367]
Length = 190
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/190 (86%), Positives = 183/190 (96%)
Query: 128 VWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSD 187
VWFRNDLRVHDNE LN A+NES+SVLPVYCFDPRDYGKSSSGFDKTGPYRA+FLIESV+D
Sbjct: 1 VWFRNDLRVHDNECLNAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVAD 60
Query: 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG 247
L+KNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVS+DEVK EEKIE MKDEG
Sbjct: 61 LKKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEEKIEGVMKDEG 120
Query: 248 IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVE 307
++VK+FWGSTLYH+DDLPFKL MPTNYGGFREKVKG+EIRKTIEALDQ++GLP+RGDVE
Sbjct: 121 VDVKFFWGSTLYHVDDLPFKLEGMPTNYGGFREKVKGLEIRKTIEALDQMRGLPARGDVE 180
Query: 308 PGDIPSLLDL 317
PG+IPSL+DL
Sbjct: 181 PGEIPSLVDL 190
>gi|92429536|gb|ABD93512.2| DNA photolyase protein [Coffea canephora]
Length = 189
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 158/189 (83%), Positives = 184/189 (97%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFRNDLRVHDNE LN+ANNES+SVLPVYCFDPRDYGKSSSGFDKTGP+RA+FL+ESV+DL
Sbjct: 1 WFRNDLRVHDNECLNSANNESMSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLESVADL 60
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
RK LQA+GSDLVVR+GKPETVLVELA+A+GA+AVYAHREVSHDEVK+E+ IEA +K+EG+
Sbjct: 61 RKTLQAKGSDLVVRIGKPETVLVELAQAVGAEAVYAHREVSHDEVKAEDNIEAVLKEEGV 120
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
EVKYFWGSTLYH+DDLPFKL EMPTNYGGF+EKV+G+E+RKTIEALDQ+KGLP++GDVEP
Sbjct: 121 EVKYFWGSTLYHIDDLPFKLTEMPTNYGGFKEKVQGLEVRKTIEALDQVKGLPAKGDVEP 180
Query: 309 GDIPSLLDL 317
G+IPSL+DL
Sbjct: 181 GEIPSLVDL 189
>gi|92429532|gb|ABD93510.2| DNA photolyase protein [Capsicum annuum]
Length = 188
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 161/188 (85%), Positives = 180/188 (95%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FRNDLRVHDNE L A+NES+SVLPVYCFDPRDYGKSSSGFDKTGPYRA+FLIESV DLR
Sbjct: 1 FRNDLRVHDNECLXAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVKDLR 60
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
KNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVS+DEVK E+KI+A MKDEG++
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIDAVMKDEGLD 120
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPG 309
VK+FWGSTLYHLDDLPFKL EMPTNYGGFREKV+G+E+RKTIEALDQL+G P+RGDVEPG
Sbjct: 121 VKFFWGSTLYHLDDLPFKLEEMPTNYGGFREKVQGLEVRKTIEALDQLRGFPARGDVEPG 180
Query: 310 DIPSLLDL 317
+IPSL+DL
Sbjct: 181 EIPSLVDL 188
>gi|93004444|gb|ABD93508.3| DNA photolyase protein [Petunia axillaris subsp. parodii]
Length = 181
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 155/181 (85%), Positives = 173/181 (95%)
Query: 138 DNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGS 197
D ES N A+NES SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGS
Sbjct: 1 DKESFNAAHNESKSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLRKNLQARGS 60
Query: 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGST 257
DLVVR+GKPETVLVELAKA+GA+AVYAHREVS+DEVK E+KIE+ MKDEG+EVK+FWGST
Sbjct: 61 DLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIESVMKDEGVEVKFFWGST 120
Query: 258 LYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDL 317
LYH+DDLPFKL EMPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVE G+IPSL+DL
Sbjct: 121 LYHVDDLPFKLEEMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVETGEIPSLVDL 180
Query: 318 G 318
G
Sbjct: 181 G 181
>gi|92429530|gb|ABD93509.2| DNA photolyase protein [Nicotiana tomentosiformis]
Length = 170
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 166/170 (97%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FRNDLRVHDNESLN A+NES+SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLR
Sbjct: 1 FRNDLRVHDNESLNAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLR 60
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
KNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVS+DEVK E+KIE+ MKDEG+E
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIESVMKDEGVE 120
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
VKYFWGSTLYH+DDLPFKL EMPTNYGGFREKV+G+E+RKTIEALDQL+G
Sbjct: 121 VKYFWGSTLYHVDDLPFKLEEMPTNYGGFREKVQGLEVRKTIEALDQLRG 170
>gi|92429544|gb|ABD93516.2| DNA photolyase protein [Solanum habrochaites]
gi|92429552|gb|ABD93520.2| DNA photolyase protein [Solanum pennellii]
Length = 174
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 151/174 (86%), Positives = 169/174 (97%)
Query: 144 TANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203
A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGSDLVVR+
Sbjct: 1 AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRI 60
Query: 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
GKPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DD
Sbjct: 61 GKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDD 120
Query: 264 LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDL 317
LPFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEPG+IPSL+DL
Sbjct: 121 LPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDL 174
>gi|92429554|gb|ABD93521.2| DNA photolyase protein [Solanum lycopersicoides]
Length = 173
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 150/173 (86%), Positives = 168/173 (97%)
Query: 144 TANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203
A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGSDLVVR+
Sbjct: 1 AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRI 60
Query: 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
GKPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DD
Sbjct: 61 GKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDD 120
Query: 264 LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLD 316
LPFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEPG+IPSL+D
Sbjct: 121 LPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVD 173
>gi|92429538|gb|ABD93513.2| DNA photolyase protein [Solanum chmielewskii]
Length = 173
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 149/173 (86%), Positives = 168/173 (97%)
Query: 144 TANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203
A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLI+SV+DLRKNLQARGSDLVVR+
Sbjct: 1 AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRI 60
Query: 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
GKPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DD
Sbjct: 61 GKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDD 120
Query: 264 LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLD 316
LPFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEPG+IPSL+D
Sbjct: 121 LPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVD 173
>gi|92429546|gb|ABD93517.2| DNA photolyase protein [Solanum chilense]
Length = 173
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 149/172 (86%), Positives = 167/172 (97%)
Query: 145 ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204
+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGSDLVVR+G
Sbjct: 2 GSNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIG 61
Query: 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL 264
KPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDL
Sbjct: 62 KPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDL 121
Query: 265 PFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLD 316
PFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEPG+IPSL+D
Sbjct: 122 PFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVD 173
>gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa]
gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 169/231 (73%), Positives = 196/231 (84%), Gaps = 8/231 (3%)
Query: 1 MDPNKQNLEN--PENHSNEE--QNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKIS 56
MDP+ QNLE PE+ S ++ Q LA + S SPFAT SLS SLP +LP + FF QPKIS
Sbjct: 1 MDPHLQNLETTTPESTSEDQNQQQQLAIV-SSSPFATASLSLSLPTILPTH-FFTQPKIS 58
Query: 57 TLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDP 116
+LFS P K K+PTQA++LTH+SL++S++ K+SFKST+SANPL +PL+LGP RP DP
Sbjct: 59 SLFSSPPTKAKIPTQATSLTHLSLTSSTSSP--KLSFKSTISANPLHTPLTLGPRRPSDP 116
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
+N A RRA IVWFRNDLRVHDNE LN+ANN+S+SVLPVYCFDPRDYGKSSSGFDKTGPY
Sbjct: 117 SNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKTGPY 176
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227
RA+FLIESVSDLRKNLQARGSDLVVRVG+PETVLVELAKAIGADAVYAHR+
Sbjct: 177 RANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHRD 227
>gi|217074550|gb|ACJ85635.1| unknown [Medicago truncatula]
Length = 220
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 148/196 (75%), Positives = 168/196 (85%), Gaps = 4/196 (2%)
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
MK+E +EVKYFWGSTLYH++DLPF L +MP+NYGGFR++V+ +EIRKTIEALDQLKGLPS
Sbjct: 1 MKEENVEVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPS 60
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKG 361
RGDV+ GDIP+L+DLGL+ SA MSQ GK N SM GGETEALQRLK+FAAE +AQ KG
Sbjct: 61 RGDVQLGDIPTLMDLGLNPSAIMSQDGKQVPNSSMTGGETEALQRLKRFAAECEAQSNKG 120
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW-NDGESGSSGA 420
KDG DSIYGANFSCKISPWLAMGCLSPR+MFDELKKTA+S +AS NDG GSS
Sbjct: 121 FKDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDG--GSSKT 178
Query: 421 GSNWLMFELLWRDFFR 436
G+NWLMFELLWRDFFR
Sbjct: 179 GTNWLMFELLWRDFFR 194
>gi|92429548|gb|ABD93518.2| DNA photolyase protein [Solanum peruvianum]
Length = 150
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 133/150 (88%), Positives = 146/150 (97%)
Query: 148 ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPE 207
ES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGSDLVVR+GKPE
Sbjct: 1 ESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIGKPE 60
Query: 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK 267
TVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDLPFK
Sbjct: 61 TVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFK 120
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
L +MPTNYGGFREKV+G+E+RKTIEALDQL
Sbjct: 121 LEQMPTNYGGFREKVQGLEVRKTIEALDQL 150
>gi|92429540|gb|ABD93514.2| DNA photolyase protein [Solanum pimpinellifolium]
Length = 150
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/150 (88%), Positives = 147/150 (98%)
Query: 159 DPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
DPRDYGKSSSGFDKTGPYRASFLI+SV+DLRKNLQARGSDLVVR+GKPETVLVELAKA+G
Sbjct: 1 DPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVG 60
Query: 219 ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF 278
A+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDLPFKL +MPTNYGGF
Sbjct: 61 AEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGF 120
Query: 279 REKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
REKV+G+E+RKTIEALDQL+GLP+RGDVEP
Sbjct: 121 REKVQGLEVRKTIEALDQLRGLPARGDVEP 150
>gi|384246200|gb|EIE19691.1| DNA photolyase [Coccomyxa subellipsoidea C-169]
Length = 407
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 147/323 (45%), Positives = 208/323 (64%), Gaps = 29/323 (8%)
Query: 116 PNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGP 175
P G A RRA+++WFRNDLRVHDNE+L AN +S S+LPVYCFDPR+Y S +G + TGP
Sbjct: 77 PFAGGA-RRAAVMWFRNDLRVHDNEALAIANRDSSSLLPVYCFDPREYSSSGNGINSTGP 135
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
YRA F++++V +LR +L+A GSDL+VR+GKPE VL +LAK +GA V+ H EV+++E +
Sbjct: 136 YRAQFIVDAVMELRNSLRAIGSDLIVRIGKPEEVLTDLAKKVGASKVFCHSEVTYEEDLT 195
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALD 295
E+++ AA+K E I++K WGSTLY DDLPFKLG++P +G FR KV + +++ +A
Sbjct: 196 EKQVAAALKVEDIQLKASWGSTLYSPDDLPFKLGDLPATHGEFRSKVASLAVKQPEKAPA 255
Query: 296 QLKGLP--SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
QLKG P S+G + GDIP+L LGL + + P A +GGE+E L +L + +
Sbjct: 256 QLKGKPVGSQG-ISSGDIPTLAQLGLQPLSNI-----PGAPKCRGGESEGLAQLNRLLSR 309
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ G+ A FS ++SPWLA+GCLSPR M+ E++ S
Sbjct: 310 TSMKAGPGSN-------ISAAFSNEVSPWLALGCLSPRRMYAEVQARQAS---------- 352
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
S+ + + EL+WRDFFR
Sbjct: 353 ---SNPTVVSLMHAELIWRDFFR 372
>gi|92429542|gb|ABD93515.2| DNA photolyase protein [Solanum arcanum]
Length = 145
Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats.
Identities = 128/145 (88%), Positives = 141/145 (97%)
Query: 153 LPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVE 212
L VYCFDPRDYGKSSSGFDKTGPYRASFLI+SV+DLRKNLQARGSDLVVR+GKPETVLVE
Sbjct: 1 LAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVE 60
Query: 213 LAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMP 272
LAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDLPFKL +MP
Sbjct: 61 LAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMP 120
Query: 273 TNYGGFREKVKGVEIRKTIEALDQL 297
TNYGGFREKV+G+E+RKTIEALDQL
Sbjct: 121 TNYGGFREKVQGLEVRKTIEALDQL 145
>gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii]
gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii]
Length = 443
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/364 (44%), Positives = 221/364 (60%), Gaps = 52/364 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSS----------SGFDKT 173
+A++VWFRNDLR+HDN +L A +S SVLPVY FDPRDYGK+ SGFD+T
Sbjct: 42 KAALVWFRNDLRLHDNPALEQACRQSSSVLPVYVFDPRDYGKAGYSVCLLPQTPSGFDRT 101
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
GP RA FL+E+V+DLR+ L+ GSDLVVR+G+PE VL ELA A+GA AVY EV+ +E+
Sbjct: 102 GPGRARFLLEAVADLRQRLRDAGSDLVVRLGRPEAVLKELAAAVGAGAVYCQSEVTAEEM 161
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+ E ++ AA+ E E++ WG TL+HL+DLPF+L MPT+Y FRE+V +++R+ E+
Sbjct: 162 QVEGRVRAALDRESCELRPQWGGTLFHLEDLPFRLDAMPTSYADFRERVANLKVRQLSES 221
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLS--------------QSAAMSQGGKPAANSMKGG 339
+KGLP+ VEPGDIP+L LG S A + GG PA ++GG
Sbjct: 222 DGGIKGLPAGNSVEPGDIPTLQRLGFSPAAATAGAAAPGSGLGAPLQLGGGPAL-VLRGG 280
Query: 340 ETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYG-----ANFSCKISPWLAMGCLSPRSMF 394
E+EAL+ ++ F E + + G A FSC+ISPWLA+GCLSPR M+
Sbjct: 281 ESEALRHMQAFIDELRRAVSGAAAAASGSGKPGAAPPSATFSCRISPWLALGCLSPRRMY 340
Query: 395 DELKK----------------------TATSISAASKWNDGESGSSGAGSNWLMFELLWR 432
E+++ A +S +K +G +G+ +NWL+FELLWR
Sbjct: 341 HEMRQQLAPAGAPVIRSSSSSAIGSGSAAAPLSGPAKQGGAAAGGAGSPANWLVFELLWR 400
Query: 433 DFFR 436
DFFR
Sbjct: 401 DFFR 404
>gi|307110914|gb|EFN59149.1| hypothetical protein CHLNCDRAFT_56756 [Chlorella variabilis]
Length = 444
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/322 (49%), Positives = 207/322 (64%), Gaps = 7/322 (2%)
Query: 116 PNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGP 175
P GA RR IVWFR DLR+HDNE+L A E S+LPVYCFDPR+YGKS G+DKTGP
Sbjct: 101 PGCGAG-RRPGIVWFRGDLRLHDNEALARAQAECSSLLPVYCFDPREYGKSPQGYDKTGP 159
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
YRA FL E+V+DLR L+A GS+LVVRVG+PE V+ EL + GA AVY H EV+++++++
Sbjct: 160 YRAQFLAEAVADLRAALRAAGSELVVRVGRPEEVVGELVRRTGAGAVYCHTEVAYEDLRA 219
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALD 295
E + AA + G ++ +W +TL HLDDLPF L ++P N+ FRE++ GV +R + A
Sbjct: 220 EAAVRAAAEAGGARLRAYWANTLCHLDDLPFSLDQLPQNFDKFREQIGGVAVRAALPAPQ 279
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQ-SAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
+L GLP G V+PGDIP+L LGL AA + G S +GGE EAL++L++F A
Sbjct: 280 ELHGLPLGGRVDPGDIPTLEQLGLQPLPAAAATGSIGEGGSPRGGEGEALRQLQRFVAAA 339
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
Q G H S NFS I+PWLA GCLSPR M ++ ++ + +AA
Sbjct: 340 GGQAAAGPVAAAHGS----NFSANIAPWLATGCLSPRRMLEDARRALAAPTAAGA-TPAA 394
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
S A W+ FEL WRDFFR
Sbjct: 395 SRPLQAPLEWVRFELYWRDFFR 416
>gi|452822894|gb|EME29909.1| photolyase/blue-light receptor [Galdieria sulphuraria]
Length = 444
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 205/332 (61%), Gaps = 29/332 (8%)
Query: 113 PLDPNNGAAIRRAS-----IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSS 167
PL N G + +A IVWFRNDLR+HDN +L A E +LPVYCFDPR +GK+S
Sbjct: 99 PLGENFGESAGQAYKGSKIIVWFRNDLRLHDNPALFRAAEEGSLILPVYCFDPRQFGKTS 158
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227
GF+KTG YRA FLI+SV DLRK+ +A+GSDL+VR+G+PE VL EL + G V+ HRE
Sbjct: 159 FGFEKTGRYRAQFLIDSVEDLRKSFRAKGSDLIVRLGRPEEVLPELCRQTGCKRVFCHRE 218
Query: 228 VSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVE 286
V+++++ EE + A++ G+E+ W +TLY +DLPF++ MP Y FRE V+ G +
Sbjct: 219 VTYEDLIVEEDVGDALESIGVEMTLLWSNTLYQAEDLPFQVENMPDIYTKFRESVETGGK 278
Query: 287 IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQG--GKPAANSMKGGETEAL 344
IR E L+ + P R EPG+IP+L +LGL S G + + +GGE+E+L
Sbjct: 279 IR---EPLELSEAFPPRPRCEPGEIPTLTELGLDASPERIPGESNPRSIHGFRGGESESL 335
Query: 345 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 404
+R++ + +E ++ G + GA+FSCKISPWLA+GC+SPR ++ E +
Sbjct: 336 KRMEDYLSEMRSTEISSTTAGAY---LGADFSCKISPWLALGCISPRKIYHE-------V 385
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ +S D + FEL+WRDFFR
Sbjct: 386 NGSSVPEDVRKTT--------YFELVWRDFFR 409
>gi|449015791|dbj|BAM79193.1| probable photolyase/blue-light receptor [Cyanidioschyzon merolae
strain 10D]
Length = 438
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 200/326 (61%), Gaps = 24/326 (7%)
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
NG + ++WFR+DLR+ DN +L A E SVLPVYCFDPR +GK+S GF+KTG Y
Sbjct: 97 KNGGTV----LLWFRSDLRLDDNPALCAALEEGASVLPVYCFDPRQFGKTSFGFEKTGRY 152
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FLIESV+DLRK L+ +G++L++R+GKPE V+ +L + V+ H+EV+++E++ E
Sbjct: 153 RAKFLIESVADLRKALKKKGNNLLIRIGKPEEVIPDLCRKYEIKKVFYHQEVTYEELECE 212
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALD 295
E + ++D +EV FW +TLY ++DLPF + E P Y +R V+ +R + A D
Sbjct: 213 EAVARKLEDMKVEVHPFWTNTLYAVEDLPFPVEETPDVYTEYRLAVESKSRVRDPLAAPD 272
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAA-----NSMKGGETEALQRLKKF 350
+++ +P VE G +P+L DLGL Q + G + + +GGE+EA QRL ++
Sbjct: 273 EIRAIPR--HVEYGTLPTLEDLGLGQVPKTPEYGSASTAGSSLHHFRGGESEAQQRLAQY 330
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
+ + G + GA+FSCKISPWLA+GC+SPR +F E++ A
Sbjct: 331 VQDAKHALSVGGDVERAAAHLGADFSCKISPWLALGCVSPRRIFAEIRDHAL-------- 382
Query: 411 NDGESGSSGAGSNWLMFELLWRDFFR 436
+G+ GA + FEL+WRDFFR
Sbjct: 383 ----NGAEGAQKSTTFFELVWRDFFR 404
>gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula]
Length = 235
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/155 (80%), Positives = 141/155 (90%), Gaps = 1/155 (0%)
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFK-STLSANPLQSPLSLGPHRPLDPNNGAAIR 123
K+KVPTQAS+LTH+SLS + SPS +FK S+ S+NPL+SPLSL PHRP DP++ AA+R
Sbjct: 58 KLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSSNPLKSPLSLIPHRPNDPSSAAALR 117
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFRNDLRVHDNE+LNTANNES+SVLPVYCFDP DYGKSSSGFDKTGPYRASFLIE
Sbjct: 118 RTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIE 177
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
S+SDLRKNL+ARGSDLVVRVGKPETVLVELAK +G
Sbjct: 178 SISDLRKNLKARGSDLVVRVGKPETVLVELAKKLG 212
>gi|428225294|ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
gi|427985195|gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
Length = 498
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 196/311 (63%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR+HD+E L A + ++ PVYCFDPR +GK+ GF KTG +RA FL+ESV+
Sbjct: 7 LLWFRNDLRLHDHEPLQRALKQKTAIAPVYCFDPRHFGKTPYGFPKTGAFRAQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +LQ RGSDL+VRVGKPE V+ +A+ +GA AVY H E + +E+ EE++ A+KD+
Sbjct: 67 DLRASLQKRGSDLIVRVGKPEEVVPAIARDLGATAVYFHEEATAEEIAVEERLIQALKDQ 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPSRGD 305
G + FWG+TLY DDLPF E+P + FR++V+ ++R + K LP+ G
Sbjct: 127 GTAHQSFWGATLYAPDDLPFGTDEIPEVFTQFRKRVESQSDVRSPFAS---PKALPALGA 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+ G++P+L DLGL + +G + +GGET L RL+ + +Q+ K+
Sbjct: 184 IALGELPTLADLGLEPPSPDKRG----VLAFRGGETAGLARLQHYF--WQSDRLSVYKE- 236
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + GA++S K SPWLA+GCLSPR + D++ +A ND + WL
Sbjct: 237 TRNGMLGADYSSKFSPWLALGCLSPRYIHDQVLTYEDDRTA----ND--------STYWL 284
Query: 426 MFELLWRDFFR 436
+FELLWRD+FR
Sbjct: 285 IFELLWRDYFR 295
>gi|297743900|emb|CBI36870.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 125/167 (74%), Positives = 138/167 (82%), Gaps = 4/167 (2%)
Query: 271 MPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGK 330
MPTNYGGF+EKVKG+EIRKTI LDQL+GLP+RGDVE G+IPSLLDLGLS SA + Q G
Sbjct: 1 MPTNYGGFKEKVKGLEIRKTIATLDQLRGLPARGDVEAGEIPSLLDLGLSPSATLPQNGM 60
Query: 331 PAAN-SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 389
AN S+ GGETEALQRLKKFAAE QAQPPKG +DSIYGANFSCKISPWLAMGCLS
Sbjct: 61 STANGSLVGGETEALQRLKKFAAECQAQPPKG---AANDSIYGANFSCKISPWLAMGCLS 117
Query: 390 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
PRSMFDE+KK+A+ +AS DG SG S G NWLMFEL+WRDFFR
Sbjct: 118 PRSMFDEIKKSASRTISASTSKDGGSGQSDTGMNWLMFELMWRDFFR 164
>gi|434399467|ref|YP_007133471.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
gi|428270564|gb|AFZ36505.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
Length = 488
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 197/314 (62%), Gaps = 23/314 (7%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ ++WFRNDLR+HD++ + A E ++PVYCFD R++ ++S GF KTG YRA FL+
Sbjct: 3 KQRILIWFRNDLRLHDHKPIYQAVQEQAQIIPVYCFDQREFKQTSFGFPKTGNYRAQFLL 62
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ESV+DL+K+LQ GSDL++ G PE ++ LA+ + D+VY H+EV+ +E+K E+ ++
Sbjct: 63 ESVADLKKSLQKLGSDLIIYWGFPEQIIPHLAQKLKIDSVYYHQEVTAEELKVEQALKQE 122
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLP 301
++ I+V FWG+TLY +DLPF++ ++P Y FR K VE + TIE L K LP
Sbjct: 123 LQKLKIQVNSFWGATLYLTEDLPFEISQIPELYTNFR---KQVEAKSTIENPLPTPKELP 179
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
S +E G IP + DLGL+ K A + KGGETEAL RL ++ +Q K
Sbjct: 180 SLPSIELGQIPQISDLGLTTPIF----DKRAVLNFKGGETEALTRLNQYF--WQLDCLKE 233
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
K+ + + GAN+S K SPWLA GC+SPR ++++++K T ND
Sbjct: 234 YKE-TRNGMLGANYSSKFSPWLARGCISPRYIYEQVQKYETKRIK----ND--------S 280
Query: 422 SNWLMFELLWRDFF 435
+ WL+FEL+WRDFF
Sbjct: 281 TYWLIFELIWRDFF 294
>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
Length = 515
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 192/336 (57%), Gaps = 23/336 (6%)
Query: 102 LQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR 161
L S +S+ ++ G + ++W+RNDLRVHD+E L+ A ++PVYCFDPR
Sbjct: 4 LNSDISVNICNEVNSGQGKMSDKRVLIWYRNDLRVHDHEPLHLAVKAQAEIIPVYCFDPR 63
Query: 162 DYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA 221
+GK+S GF KTG +RA FL+ESV+DLR +L+ GSDL+VR PETV+ EL K +G D
Sbjct: 64 QFGKTSFGFPKTGVFRAQFLLESVTDLRNSLRKLGSDLIVRYDFPETVIPELVKQLGIDE 123
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK 281
VY +REV+ +E+ E +E A+ + +K +WG+TLY LDDLPF + +P + FR
Sbjct: 124 VYYYREVTSEELAVETTLEKALNPLDVSLKSYWGATLYDLDDLPFSINRIPEVFTQFR-- 181
Query: 282 VKGVEIRKTIEA-LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGE 340
K VE TI A + LP +E G++P+L LGL Q + + +GGE
Sbjct: 182 -KQVEKNGTIYASFPTPQRLPILPQIEVGELPTLQKLGLE----TPQFDQRSVLKFQGGE 236
Query: 341 TEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKT 400
T + RL + E Q + + + GAN+S K SPWLA+GCLSPR ++D ++
Sbjct: 237 TAGISRLTDYIWE---QDCLKDYKQTRNGMLGANYSSKFSPWLALGCLSPRFIYDHVQDY 293
Query: 401 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
E + WL+FELLWRD+FR
Sbjct: 294 E------------EQRVKNDSTYWLVFELLWRDYFR 317
>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
Length = 486
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 133/312 (42%), Positives = 194/312 (62%), Gaps = 25/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E L E V+P YCFD R + +S F KTG +R FL+ESV+
Sbjct: 7 LIWYRNDLRIHDHEPLYQGIKEGDLVIPFYCFDIRQFQTTSYAFPKTGNFRGQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++LQ GSDL+VR G PE ++ EL K + DAVY H EV+ +E K E+K++ A+K
Sbjct: 67 NLRQSLQDLGSDLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKVKQALKPL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
++V FWG+TLYH +DLPF++ ++P + FR+KV K + T+ +L LP D
Sbjct: 127 KVKVPGFWGATLYHWNDLPFEVNQLPEVFTSFRKKVEKNSTVNPTLITPRKLLSLP---D 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKGNKD 364
VE G+IPSL +LGL +S + S+G + KGGET ++RL+ + E + K ++
Sbjct: 184 VEIGNIPSLEELGLKKSDSDSRG----VLNFKGGETAGIKRLQDYFWERNCLKEYKETRN 239
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + GA++S K SPWLA GCLSPR +++E++K E + W
Sbjct: 240 G----MLGADYSSKFSPWLAHGCLSPRYIYEEVQKYE------------EERVKNNSTYW 283
Query: 425 LMFELLWRDFFR 436
L+FELLWRD+FR
Sbjct: 284 LIFELLWRDYFR 295
>gi|92429550|gb|ABD93519.2| DNA photolyase protein [Solanum cheesmaniae]
Length = 130
Score = 247 bits (630), Expect = 1e-62, Method: Composition-based stats.
Identities = 113/130 (86%), Positives = 127/130 (97%)
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227
SGFDKTGPYRASFLI+S++DLRKNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHRE
Sbjct: 1 SGFDKTGPYRASFLIDSIADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHRE 60
Query: 228 VSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI 287
VSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDLPFKL +MPTNYGGFREKV+G+E+
Sbjct: 61 VSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEV 120
Query: 288 RKTIEALDQL 297
RKTIEALDQL
Sbjct: 121 RKTIEALDQL 130
>gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|376007766|ref|ZP_09784952.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|423063001|ref|ZP_17051791.1| cryptochrome DASH family [Arthrospira platensis C1]
gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|375323871|emb|CCE20705.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|406715580|gb|EKD10734.1| cryptochrome DASH family [Arthrospira platensis C1]
Length = 486
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 191/317 (60%), Gaps = 21/317 (6%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA + I+W+R+DLR+HD+E L+ A + ++P+YCFDPR + K+S GF K G +R
Sbjct: 2 AANPQKIILWYRHDLRLHDHEPLDLATSTQAQIIPLYCFDPRQFAKTSFGFPKMGGFRGK 61
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL+ESV+DLR NLQ GS+L+VR+G+PETV+ +L K + DAVY H+EV+ +E+ E +
Sbjct: 62 FLLESVADLRHNLQKIGSNLLVRIGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVERAL 121
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E A+ G+EVK FWG+TLYH +LPF + ++P + FR++V+ I K
Sbjct: 122 EKALTPLGVEVKSFWGATLYHPKELPFPIEKLPELFTNFRKQVEKKSI--IYPPYTPPKQ 179
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LP+ D+EPG+IP+L +LG+++ S+ A GGET L RL + + +
Sbjct: 180 LPTFPDIEPGEIPTLAELGITKLPFDSR----AVLDFVGGETAGLTRLNDY---FWQRDC 232
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
N + + G+++S K SPWLA GCLSPR ++ ++ +
Sbjct: 233 LKNYKQTRNGMLGSDYSSKFSPWLANGCLSPRWIYQQVCDYE------------QQRVKN 280
Query: 420 AGSNWLMFELLWRDFFR 436
+ WL+FELLWRD+FR
Sbjct: 281 DSTYWLVFELLWRDYFR 297
>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 486
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 189/312 (60%), Gaps = 25/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E L A + ++P YCFD R + +S GF KTG +R FL+ESV+
Sbjct: 7 LIWYRNDLRIHDHEPLYQAIKQGALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLLESVT 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL+K+LQ GS+L++R G PE ++ EL K + DAVY H EV+ +E E +E A+K
Sbjct: 67 DLKKSLQDLGSNLIIRQGYPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEKALKPL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ K FWG+TLYH DDLPF++ ++P + FR+KV K + + + +L+ LP D
Sbjct: 127 NVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILISPRKLRSLP---D 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKGNKD 364
+E G++PSL +L L + S+G KGGETE +QRL + E + K ++
Sbjct: 184 IEVGNVPSLEELELEKPKYDSRG----VLEFKGGETEGIQRLNNYFWERNCLKEYKETRN 239
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + GA++S K SPWLA GCLSPR +++E++K E + W
Sbjct: 240 G----MLGADYSSKFSPWLANGCLSPRYIYEEVQKYE------------EKRIKNNSTYW 283
Query: 425 LMFELLWRDFFR 436
L+FELLWRD+FR
Sbjct: 284 LIFELLWRDYFR 295
>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 498
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 187/311 (60%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+W+RNDLR+HD+E L A + ++P+YC DPR + ++ GF KTG +RA FL+ES++
Sbjct: 7 ILWYRNDLRIHDHEPLYKALKVNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKFLLESIA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR NLQ GS+LV+ KPE V+ LA+ + A +V+ H+EV+ EVK E + A+K
Sbjct: 67 DLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVERLVHQALKQI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
G+ +K FWG TLYH DDLPF++ ++P + FR+ V K + T +L LP
Sbjct: 127 GVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSSVNPTFSIPKKLSSLPK--- 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++P+L DL L + SQG KGGET A +R+K + +Q K K+
Sbjct: 184 IDVGELPTLSDLNLEKPPLNSQG----VLEFKGGETAAKERVKNYF--WQQDYLKVYKE- 236
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + GAN+S K SPWLA+GCLSPR +++E+K+ + WL
Sbjct: 237 TRNGMLGANYSSKFSPWLALGCLSPRYIYEEVKEYEY------------QRVKNQSTYWL 284
Query: 426 MFELLWRDFFR 436
+FEL+WRD+FR
Sbjct: 285 IFELIWRDYFR 295
>gi|409991103|ref|ZP_11274395.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
gi|409938041|gb|EKN79413.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
Length = 490
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 192/318 (60%), Gaps = 23/318 (7%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA + I+W+RNDLR+HD+E L+ A + ++P+YCFDPR + K+S GF KTG +R
Sbjct: 2 AANPQKIILWYRNDLRLHDHEPLDLATSTQGQIIPLYCFDPRQFAKTSFGFPKTGGFRGK 61
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL+ESV+DLR N Q GS+L+VR+G+PE V+ +L K + DAVY H+EV+ +E+ E +
Sbjct: 62 FLLESVADLRHNFQKIGSNLLVRIGEPERVIFDLVKQLNIDAVYYHKEVTAEELAVETAL 121
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE-IRKTIEALDQLK 298
E A+ G+EVK FWG+TLYHL +LPF + ++P + FR++V+ I +QL
Sbjct: 122 EKALTPLGVEVKSFWGATLYHLKELPFPIEKLPELFTNFRKQVEQKSVIYPPYTPPNQLP 181
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P D+EPG+IP+L +LG++ + + + GGET L RL + + +
Sbjct: 182 QFP---DIEPGEIPTLTELGITPAPFDER----SVLDFAGGETAGLSRLNDY---FWRRD 231
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
N + + G+++S K SPWLA GCLSPR ++ +++ ND
Sbjct: 232 CLKNYKQTRNGMLGSDYSSKFSPWLANGCLSPRWIYQQVQDYQHQRVK----ND------ 281
Query: 419 GAGSNWLMFELLWRDFFR 436
+ WL+FELLWRD+FR
Sbjct: 282 --STYWLVFELLWRDYFR 297
>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354552505|ref|ZP_08971813.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353555827|gb|EHC25215.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
Length = 491
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 195/312 (62%), Gaps = 25/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E + A E ++P+YCFD R + +S GF KTG +R FL+ESV+
Sbjct: 12 LIWYRNDLRIHDHEPMYQAIKEGALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFLLESVA 71
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++LQ GS+L+VR G PE ++ EL K + DAVY H EV+ +E E++++ A+K
Sbjct: 72 NLRQSLQDLGSNLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETTVEKEVKQALKPL 131
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
++V+ FWGSTLYH DDLPF++ ++P + FR+KV K + T+ +L P +
Sbjct: 132 KVKVQGFWGSTLYHWDDLPFEVNQLPEVFTSFRKKVEKSSTVNPTLITPIKLLPFP---N 188
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKGNKD 364
+E G IP+L +LGL + S+G + KGGET ++RLK++ E + K ++
Sbjct: 189 IELGKIPTLEELGLEKPDYHSRG----MLNFKGGETGGIKRLKEYFWERNCLKEYKETRN 244
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + GA++S K SPWLA GCLSPR +++E++K ++ + W
Sbjct: 245 G----MLGADYSSKFSPWLAQGCLSPRYIYEEVQKYE------------DARVKNNSTYW 288
Query: 425 LMFELLWRDFFR 436
L+FELLWRD+FR
Sbjct: 289 LIFELLWRDYFR 300
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 193/312 (61%), Gaps = 25/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HDN+ + A E ++PVYCFD R + ++ GF KTG +RA FL ESV+
Sbjct: 7 LIWYRNDLRIHDNKLIYQALKEKAQIIPVYCFDKRQFVQTYFGFPKTGKFRAQFLRESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +LQ GS+L+VR+G PE ++ LA+ + DAVY H EV+ +E+ E+ ++ A+
Sbjct: 67 DLRNSLQKLGSNLIVRLGFPEKIIPALAQELNIDAVYYHEEVTSEELAVEKSLKKALSQI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSRGD 305
G++V FWG+TLYH D+LPFK+ ++P + FR K +E + TI+ L + LP
Sbjct: 127 GVKVNSFWGATLYHPDNLPFKIHQIPELFTNFR---KQLEKKSTIDPTLPSPQKLPPLPK 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKGNKD 364
VEPG+IP LL+LG+ + + A +GGET+ L RL + E + K ++
Sbjct: 184 VEPGEIPQLLELGIEELIF----DERAVLKFQGGETKGLVRLHNYFWEKDCLRTYKETRN 239
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + G ++S K SPWLA+GCLSPR ++++++K + ND + W
Sbjct: 240 G----MLGLDYSSKFSPWLALGCLSPRLIYEQVQKYESERIK----ND--------STYW 283
Query: 425 LMFELLWRDFFR 436
L+FEL+WRDFFR
Sbjct: 284 LVFELMWRDFFR 295
>gi|218245570|ref|YP_002370941.1| DASH family cryptochrome [Cyanothece sp. PCC 8801]
gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
Length = 488
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 192/310 (61%), Gaps = 21/310 (6%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD++ + A + ++P YCFD R + +S GF KTG +++ FL++S+
Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKQKAQIIPFYCFDNRQFKTTSFGFPKTGNFKSQFLLQSID 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRKNLQ GS+LVVR G PE ++ E+ K + DAVY H+EV+ +E+K E +E A+
Sbjct: 69 NLRKNLQQLGSNLVVRRGYPEKIIPEICKELAIDAVYFHQEVTSEEIKVETALEKALTQM 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+++ FWG+TLYH DDLPF L E+P + FR++V+ + + K LPS ++
Sbjct: 129 GVQLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINS--TFPTPKKLPSLPNL 186
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
+ G+IP+L +LGL S+G GGE+E ++RL ++ +Q K K+
Sbjct: 187 DLGNIPTLAELGLETPEFDSRG----VLEFIGGESEGIKRLNQYF--WQKNRLKDYKETR 240
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
++ + G+++S K SPWLA+GCLSPR +++E+ K ND + WL+
Sbjct: 241 NEML-GSDYSSKFSPWLALGCLSPRYIYEEVTKYELERVK----ND--------STYWLI 287
Query: 427 FELLWRDFFR 436
FELLWRD+FR
Sbjct: 288 FELLWRDYFR 297
>gi|443477859|ref|ZP_21067672.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
gi|443016926|gb|ELS31485.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
Length = 497
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 189/315 (60%), Gaps = 28/315 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNES----VSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
+VWFRNDLR+HD E L+ A S V P YCFDP +GK+S GF+KTG +RA FLI
Sbjct: 7 LVWFRNDLRLHDCEILSLAAEASKRMNAEVFPFYCFDPYHFGKTSFGFEKTGAFRAKFLI 66
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ESV DLR NL++ SDL+VR+GKPE +L EL + +G ++Y RE++ +E E ++ +
Sbjct: 67 ESVIDLRANLRSLNSDLIVRIGKPELILPELTQQLGLTSIYYQREIATEETSLERRLHSI 126
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLP 301
+ ++ K FWG TL H DDLPF + +P + FR++V+ + IR+ +D+L LP
Sbjct: 127 FTKQNVDFKGFWGKTLIHCDDLPFAIAHLPELFTHFRKQVEANLIIREPFPLVDRLPALP 186
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPK 360
D+ G+IP L LGL + ++ A +GGET A++RL F A + Q K
Sbjct: 187 PSIDI--GEIPHLTQLGLEEFLPCAR----AKFQFRGGETAAIERLNHYFWASDRLQVYK 240
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G ++ + S K SPWLA+GCLSPR ++ ++KK + A ND
Sbjct: 241 QTRNGMLET----DDSSKFSPWLALGCLSPRYIYAQIKKYESDRLA----ND-------- 284
Query: 421 GSNWLMFELLWRDFF 435
+ WL+FELLWRD+F
Sbjct: 285 STYWLIFELLWRDYF 299
>gi|257058615|ref|YP_003136503.1| DASH family cryptochrome [Cyanothece sp. PCC 8802]
gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
Length = 488
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 191/310 (61%), Gaps = 21/310 (6%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD++ + A + ++P YCFD R + +S GF KTG +R+ FL++S+
Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKKKAQIIPFYCFDDRHFKTTSFGFPKTGNFRSQFLLQSID 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRKNLQ GS+LV+R G PE ++ E+ + + DAVY H+EV+ +E+K E +E A+
Sbjct: 69 NLRKNLQQLGSNLVIRRGYPEKIIPEICQELAIDAVYFHQEVTSEEIKVETALEKALTQM 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+++ FWG+TLYH DDLPF L E+P + FR++V+ + + K LPS ++
Sbjct: 129 GVKLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINS--TFPTPKKLPSLPNL 186
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
+ G+IP+L +LGL S+G GGE+E ++RL ++ +Q K K+
Sbjct: 187 DLGNIPTLAELGLETPEFDSRG----VLEFIGGESEGIKRLNQYF--WQKNRLKDYKE-T 239
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
+ + G+++S K SPWLA+GCLSPR +++E+ K ND + WL+
Sbjct: 240 RNGMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELERVK----ND--------STYWLI 287
Query: 427 FELLWRDFFR 436
FELLWRD+FR
Sbjct: 288 FELLWRDYFR 297
>gi|218437350|ref|YP_002375679.1| DASH family cryptochrome [Cyanothece sp. PCC 7424]
gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
Length = 488
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 194/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR+HD+E+LN A E ++P YCFD R + +S GF KTG +RA FL+ESV+
Sbjct: 7 LIWFRNDLRLHDHEALNEALQEKADIIPFYCFDERQFRTTSYGFPKTGKFRAQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++LQ GS+LV+R G PE ++ ++A+ + A+Y H EV+ +E+ E++++ A+
Sbjct: 67 DLRQSLQKLGSNLVIRQGLPELIIPQIAQPLNITALYYHEEVTAEELTVEKRLKKALAKC 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSRGD 305
I+V+ FWG+TLYH D+LPF++ ++P + FR K VE + T+ L K LP D
Sbjct: 127 NIKVESFWGTTLYHPDNLPFEIYQLPELFTNFR---KQVERKSTVAPVLPAPKSLPPLPD 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++PSL +LGL + +G +GGE +RL+ + +Q K K+
Sbjct: 184 LDIGNLPSLSELGLEPAVFEPRG----VLKFQGGEIAGRERLQDYI--WQKNCLKNYKET 237
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + GA++S K SPWLA GCLSPR +++E++K ND + WL
Sbjct: 238 RNEML-GADYSSKFSPWLAHGCLSPRYIYEEVQKYEHQRVK----ND--------STYWL 284
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 285 IFELLWRDFFR 295
>gi|425438643|ref|ZP_18818987.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
gi|389719600|emb|CCH96584.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
Length = 485
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 194/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSGV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + +IR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERYWQIRATYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+E G++PSL DLGL++S + +GG S +GGE R+K++ + + K K+
Sbjct: 181 IELGNLPSLNDLGLTES-ILDRGG---VLSFQGGEMAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
Length = 485
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 194/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSGV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + +IR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+E G++PSL DLGL++S + +GG S +GGE R+K++ + + K K+
Sbjct: 181 IELGNLPSLNDLGLTES-ILDRGG---VLSFQGGEMAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 484
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 186/314 (59%), Gaps = 29/314 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR+HD+ L+ A + V+P YCFDPR +G++ GF KTGP+RA FL+ESV+
Sbjct: 4 LIWFRNDLRLHDHAPLHQAVRSNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ + SDL++R G PETVL ELA+A+ + VY +REV+ +E++ E ++ +A+ D
Sbjct: 64 DLRQSLRGKQSDLILRQGHPETVLPELAQALKVETVYFNREVTAEEIEVENRLRSALADL 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GIE FW STL+H + LPF + E+P + FR++V K + + L LP D
Sbjct: 124 GIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPFPTPQSLSTLP---D 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSM---KGGETEALQRLKKFAAEYQAQPPKGN 362
+ PG++P L D GLS +P A +M GGET AL RL+ + E Q
Sbjct: 181 IAPGELPQLEDWGLSSP-------EPDARAMIQFSGGETAALARLQDYIWE---QDRLKR 230
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+ + N S K SPWLA+GC+SPR + ++K + +
Sbjct: 231 YKETRNGMLQPNDSTKFSPWLALGCVSPRYIHQQVKTYE------------QDRVKNNST 278
Query: 423 NWLMFELLWRDFFR 436
WL+FEL+WRD+FR
Sbjct: 279 YWLIFELIWRDYFR 292
>gi|425466604|ref|ZP_18845902.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
gi|389830841|emb|CCI26891.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
Length = 485
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 194/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSGV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + +IR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+E G++PSL DLGL++S + +GG S +GGE R+K++ + + K K+
Sbjct: 181 IELGNLPSLNDLGLTES-ILDRGG---VLSFQGGEMAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GNNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|425453111|ref|ZP_18832925.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|425461683|ref|ZP_18841157.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
gi|389764695|emb|CCI09167.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|389825403|emb|CCI24828.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
Length = 485
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 194/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L+ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSII 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T + +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++P L DLGL++ + QGG S +GGE R+K++ + + K K+
Sbjct: 181 IDWGNLPILKDLGLTE-LILDQGG---VLSFQGGEIAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|440756671|ref|ZP_20935871.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
gi|440172700|gb|ELP52184.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
Length = 485
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 194/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L+ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSII 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T + +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++P L DLGL++ + QGG S +GGE R+K++ + + K K+
Sbjct: 181 IDWGNLPILKDLGLTE-LILDQGG---VLSFQGGEVAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|307153163|ref|YP_003888547.1| DASH family cryptochrome [Cyanothece sp. PCC 7822]
gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
Length = 495
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E LN A E ++P YCFD R + K+S GF KTG +RA FL+ES++
Sbjct: 7 LIWYRNDLRLHDHEPLNKALKEKAEIIPFYCFDERQFRKTSYGFPKTGNFRAQFLLESLA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL+K+LQ RGSDL++R G PE ++ +LA+ + AVY H+EV+ +E+ E+ +E+ +
Sbjct: 67 DLKKSLQERGSDLIIRKGLPEKIIPQLAQELKLTAVYYHQEVTAEELAVEKALESGLNKI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
++ + FWG+TLYH D+LPFK+ +P + FR+KV K + + L LP+
Sbjct: 127 RVKTESFWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILPTPKSLSPLPA--- 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+E G +P L LGL ++ Q G +GGET AL+RL+++ +Q K K+
Sbjct: 184 IEIGTLPDLAALGL-ETPIFDQRG---VLKFRGGETAALERLEEYF--WQKNCLKSYKE- 236
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + G ++S K SPWLA GC+SPR +++ ++K + + WL
Sbjct: 237 TRNGMLGGDYSSKFSPWLASGCISPRYIYEAVQKYE------------QQRVKNDSTYWL 284
Query: 426 MFELLWRDFFR 436
+FELLWRD+FR
Sbjct: 285 IFELLWRDYFR 295
>gi|422304305|ref|ZP_16391652.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
gi|389790612|emb|CCI13529.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
Length = 485
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 194/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E++ A E + ++P YCFD R +G +S GF K+G +RA FL+ESV+
Sbjct: 4 LIWYRNDLRLHDHEAIYRAIQEQLEIIPFYCFDERQFGLTSYGFPKSGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSGF 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++PS DLGL++ + QGG S +GGE R+K++ + + K K+
Sbjct: 181 IDWGNLPSFNDLGLTE-PILDQGG---VLSFQGGEMAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
Length = 490
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 191/312 (61%), Gaps = 24/312 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W RNDLR+HD+E L+ A + ++PVYCFDPR + +S GF KTG YRA FLIE+V+
Sbjct: 4 LLWLRNDLRLHDHEPLHRATEQGADIIPVYCFDPRQFQATSFGFPKTGSYRAQFLIETVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ L++RGS+LV+ GKPE + L KA AVY H EV+ +E++ E+++E +
Sbjct: 64 ALKAELRSRGSNLVILQGKPEEEIPALVKAFDIAAVYWHEEVTPEEIEVEQRLETVLNQL 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ + +WG+TLYH DDLPF++ ++P + FR+ + K ++ T ++L LP+ +
Sbjct: 124 KVTSEVYWGATLYHPDDLPFEVSQLPEVFTQFRKAIEKNTQVFPTFPTPEKLPSLPN--E 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKD 364
+EPG++PSL DLGL ++ +G P KGGE++ L RL+ F + Q K ++
Sbjct: 182 IEPGELPSLSDLGLERTPIDEKGVLP----FKGGESKGLDRLQHYFWNADRLQRYKETRN 237
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + GA++S K SPWLA G LSPR +++E+++ + W
Sbjct: 238 G----MLGADYSSKFSPWLANGSLSPRRVYEEVQRYE------------RERKKNNSTYW 281
Query: 425 LMFELLWRDFFR 436
++FEL+WRD+FR
Sbjct: 282 MIFELMWRDYFR 293
>gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens]
gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens]
Length = 557
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 193/323 (59%), Gaps = 32/323 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIES 184
+IVWFRNDLR+ DNE+L A S +V+P+Y DPR YG++ GF KTG RA F++ES
Sbjct: 66 AIVWFRNDLRISDNEALLKAWQSSQAVVPLYVVDPRLYGQTYHFGFPKTGELRAQFIMES 125
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
V++LR NL+ RG DL+VR GKPE V+ +AK+IGA VYAH+E +E E ++ +
Sbjct: 126 VANLRDNLRQRGLDLIVRQGKPEDVVPSIAKSIGAHTVYAHKETCSEETTVETGVKRGLA 185
Query: 245 D-EG-----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQL 297
+ EG I + + WG TLYHLDDLPF E+P Y FR+ V+ ++R ++ Q+
Sbjct: 186 NLEGGPKMQIRLDFVWGGTLYHLDDLPFSPSELPDVYTQFRKGVEYNCKVRPALKMPTQM 245
Query: 298 KGLP---SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAE 353
LP S E GDIP++ +LGL G +GGET AL RL+ F +
Sbjct: 246 GPLPESLSEKIGELGDIPTMAELGLKYREQSPLG----VMHFEGGETAALARLQDYFWNK 301
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
Q + K ++G + GAN+S K SPWLA GCLSPR++ DE+K+ T A ND
Sbjct: 302 DQLKIYKETRNG----MLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETERVA----ND- 352
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
+ W++FEL+WRD+FR
Sbjct: 353 -------STYWVLFELIWRDYFR 368
>gi|425437395|ref|ZP_18817812.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
gi|389677621|emb|CCH93442.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
Length = 485
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 193/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L+ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSII 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T + +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++P L DLGL++ + QGG S +GGE R+K++ + + K K+
Sbjct: 181 IDWGNLPILKDLGLTE-LILDQGG---VLSFQGGEIAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
FELLWRDFFR
Sbjct: 282 TFELLWRDFFR 292
>gi|359457825|ref|ZP_09246388.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 484
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 181/311 (58%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR+HD+ L+ A + V+P YCFDPR +G + GF KTGP+RA FL+ESV+
Sbjct: 4 LIWFRNDLRLHDHAPLHQAVRSNADVIPCYCFDPRQFGLTPFGFPKTGPFRAQFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ + SDL++R G PETV+ ELA+A+ + VY +REV+ +E+ E ++ A+ D
Sbjct: 64 DLRQSLRGKQSDLILRQGYPETVVPELAQALNVEVVYFNREVTAEEINVETRLRTALADL 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GIE FW STL+H + LPF + E+P + FR++V K + + A L LP D
Sbjct: 124 GIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPFPAPQSLSALP---D 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++PG++P L D GLS + A GGET AL RL+ + E Q
Sbjct: 181 IDPGELPQLEDWGLSSPKLDPR----AMMQFSGGETAALARLQDYIWE---QDCLKQYKE 233
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + N S K SPW A+GC+SPR + ++K + + WL
Sbjct: 234 TRNGMLQPNNSTKFSPWFALGCVSPRYIHQQVKAYE------------QERVKNNSTYWL 281
Query: 426 MFELLWRDFFR 436
+FEL+WRD+FR
Sbjct: 282 IFELIWRDYFR 292
>gi|411119570|ref|ZP_11391950.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
gi|410711433|gb|EKQ68940.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
Length = 496
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 190/312 (60%), Gaps = 24/312 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++W+RNDLRV D+E L A + S +LPVYC DPR +G++S GF KTG +RA FL+ES+
Sbjct: 7 LIWYRNDLRVADHEPLYQALRINASHILPVYCIDPRQFGQTSFGFPKTGAFRAQFLLESL 66
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR++LQ GS+L++R G PE V+ EL + AV H+EV+ +EV E+ +E A+K
Sbjct: 67 ADLRRSLQQLGSNLIIRRGYPEQVIPELIQQFSISAVCYHKEVTSEEVIVEDALERALKP 126
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
G+E++ FWG TLYH +LPF + E+P + FR++V K V + T+ A +L LP+
Sbjct: 127 MGVELRSFWGHTLYHPAELPFDISEIPELFTSFRKQVEKSVTVNSTLPAPKRLPALPA-- 184
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
+EPG++P L + L S+ A GGET RL + +Q K K+
Sbjct: 185 -IEPGEMPQLAEFNLKAPNFDSR----AVLKFVGGETAGHNRLDYYF--WQQDCLKVYKE 237
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
+ + GA++S K SPWLA+GCLSPR++++++++ E + W
Sbjct: 238 -TRNGMLGADYSSKFSPWLALGCLSPRTIYEQVQQYE------------EQRVKNDSTYW 284
Query: 425 LMFELLWRDFFR 436
L+FELLWRD+FR
Sbjct: 285 LIFELLWRDYFR 296
>gi|425471952|ref|ZP_18850803.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
gi|389882102|emb|CCI37425.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
Length = 485
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 192/311 (61%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E+++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIHRAIQEQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLENLGGNLIIRRGKPEELIPQLVQELQIAKVYYHQEVTAEELAVEKAVNQALSGF 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++PSL DLGL++ +G S +GGE R+K++ + + K K+
Sbjct: 181 IDFGNLPSLNDLGLTELILDWRG----VLSFQGGEMAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|390440296|ref|ZP_10228639.1| Cryptochrome DASH [Microcystis sp. T1-4]
gi|389836306|emb|CCI32765.1| Cryptochrome DASH [Microcystis sp. T1-4]
Length = 485
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 192/311 (61%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGGNLIIRRGKPEELIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSGF 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF + ++P + FR++V + EIR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTIHQLPELFTNFRKQVERHWEIRTTYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++P L DLGL++ + QGG S +GGE R+K++ + + K K+
Sbjct: 181 IDWGNLPILNDLGLTE-PILDQGG---VLSFQGGEMAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E+KK ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSCGCLSPRYIYEEVKKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|443320872|ref|ZP_21049947.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
gi|442789415|gb|ELR99073.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
Length = 485
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 181/311 (58%), Gaps = 28/311 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+ D+E + A ++ V+PVYCFDPR +G + G KTG +RA FL ESV
Sbjct: 5 LIWYRNDLRLEDHEPMYQALSQKAQVIPVYCFDPRQFGTTGCGLVKTGSFRAQFLRESVI 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR NLQ GS+L++R G PE ++ LA++I DAVY H+EV+ +E+ E ++ A+
Sbjct: 65 DLRHNLQQLGSNLILRQGLPEVIIPALARSIAVDAVYFHQEVTAEELAVETALKKALAQS 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSRGD 305
I V+ FWG+TLYHLD+LPF ++P + FR K VE + IE +L Q + LP D
Sbjct: 125 QITVQSFWGATLYHLDNLPFAPAQLPELFTNFR---KEVERKAEIEPSLPQPERLPPLPD 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++PG+IP L ++ + + KGGE RLK + E A N
Sbjct: 182 IDPGEIPELAEIAPDSRGVL---------NFKGGERAGKARLKSYFWEKDA---LRNYKE 229
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + G ++S K SPWLA GCLSPR ++ +++ T ND + WL
Sbjct: 230 TRNGMLGPDYSSKFSPWLANGCLSPRYIYAQVQSYETQRVK----ND--------STYWL 277
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 278 VFELLWRDFFR 288
>gi|425444341|ref|ZP_18824394.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
gi|389730294|emb|CCI05405.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
Length = 485
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 193/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L++ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSRV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
++K FW +TLYH DDLPF L ++P + FR++V + EIR T + +L LP
Sbjct: 124 PAQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++PSL DLGL++ +G S +GGE R+K++ + + K K+
Sbjct: 181 IDWGNLPSLNDLGLTEPILDRRG----FLSFQGGEMAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|392963931|ref|ZP_10329352.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
gi|387846826|emb|CCH51396.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
Length = 482
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 194/313 (61%), Gaps = 25/313 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
+ WFRNDLR+HDNE A ++ VLPV+ F+PR + + + GF KTG YRASFL+ESV
Sbjct: 6 LYWFRNDLRLHDNEGFARAVADADEVLPVFVFNPRLFAEVHNLGFKKTGIYRASFLLESV 65
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR++++A+G +L++R+G+P +L ELA++ AVYA +EV+ +E +E + +K
Sbjct: 66 ADLRQSIRAKGGELIIRIGEPANILAELAESADVAAVYASKEVTQEETDAESNLSKRLKP 125
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
I++ FW +TLYH+ DLPF++ ++P + FR ++ K ++R TI A +Q++ +
Sbjct: 126 LNIDLDLFWVATLYHVRDLPFEISKLPDIFTQFRTRIEKYGKVRPTIPAPEQIRIM---S 182
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQPPKGNK 363
+VE GDIP+L G + A AA KGGET AL+RL ++ E + + K +
Sbjct: 183 EVEAGDIPTLATFGFAPDVAPD---IRAAVPFKGGETVALERLNRYVWERELIRTYKETR 239
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+G + G ++S K S WLA+GCLSPR +++E+K+ + +
Sbjct: 240 NG----MLGEDYSSKFSAWLALGCLSPRLIYEEVKRYE------------DERVKNESTY 283
Query: 424 WLMFELLWRDFFR 436
WL+FELLWRDFFR
Sbjct: 284 WLIFELLWRDFFR 296
>gi|284041014|ref|YP_003390944.1| DASH family cryptochrome [Spirosoma linguale DSM 74]
gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
Length = 487
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 186/314 (59%), Gaps = 22/314 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
+ WFRNDLR+HDNE A + VLPV+ FDPR + + S F + +RA+FL+ESV
Sbjct: 5 LYWFRNDLRLHDNEGFVRALENADQVLPVFVFDPRWFARHSQLEFRRMSAFRANFLLESV 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR++L++RG+DL+VRVGKP VL ELA IGA AVYA +EV+H+E E K+ +K
Sbjct: 65 ADLRQSLRSRGADLIVRVGKPADVLAELAGEIGATAVYASKEVTHEETTQETKLSTKLKP 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
I+++ FW STLYH+ DLPF + ++P + FR+++ K IR +++ +P
Sbjct: 125 LNIDIELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFTLPTRIELVP--- 181
Query: 305 DVEPGDIPSLLDLGLSQS--AAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+++PG IP+L LG + + + Q A GGET AL RL ++ +Q
Sbjct: 182 NIDPGAIPTLSTLGFNDTDIRLILQPDARGAVPFSGGETVALARLDRYL--WQTDLIATY 239
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K+ + + G ++S K S WLA GCLSPR +++E+ + T +
Sbjct: 240 KE-TRNGLLGEDYSSKFSAWLATGCLSPRKIYEEVTRYET------------ERVRNEST 286
Query: 423 NWLMFELLWRDFFR 436
WL+FELLWRDFFR
Sbjct: 287 YWLIFELLWRDFFR 300
>gi|428779828|ref|YP_007171614.1| DASH family cryptochrome [Dactylococcopsis salina PCC 8305]
gi|428694107|gb|AFZ50257.1| cryptochrome, DASH family [Dactylococcopsis salina PCC 8305]
Length = 485
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 194/316 (61%), Gaps = 24/316 (7%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ ++W+RNDLRVHD+E L A ++P YCFD R++GK++ GF KTG +RA FL
Sbjct: 3 QQVILIWYRNDLRVHDHEPLFRALQTQGQIIPFYCFDNREFGKTAFGFPKTGGFRAQFLR 62
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ESV++LR+NLQ +GS+L++R G+PET++ +L K + V+ H EV+ +E E+++E
Sbjct: 63 ESVANLRENLQDKGSNLIIRCGQPETIISDLVKDLQITDVFFHSEVTAEETHVEKELEKK 122
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLP 301
+ + G+++ FWG+TL HLDDLP + E+P + +R++V K +IR + + D+L L
Sbjct: 123 LTNYGVKLTSFWGATLDHLDDLPMTIDELPDVFTQYRKRVEKSSQIRASFPSPDRLPSLS 182
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPK 360
S ++ GD+P+L +LG+ +G + GGE+ ++RL ++ E + K
Sbjct: 183 S--EINCGDLPTLEELGVKTPLKDERG----VLNFIGGESAGIKRLSEYIWEEDCLKVYK 236
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + GAN+S K SPWLA GCLSPR ++D+++ E
Sbjct: 237 ETRNG----MLGANYSSKFSPWLARGCLSPRYIYDQVQTYE------------EERVKNN 280
Query: 421 GSNWLMFELLWRDFFR 436
+ WL+FEL+WRD+FR
Sbjct: 281 STYWLIFELMWRDYFR 296
>gi|443661557|ref|ZP_21132734.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332297|gb|ELS46914.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
Length = 485
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 195/311 (62%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+++L+ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLQQSLEGLGGNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSGV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF + ++P + FR+++ + EIR T + +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHWEIRTTYASPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G++PSL DLGL++ + +GG S +GGE R+K++ + + K K+
Sbjct: 181 IDWGNLPSLNDLGLTE-LILDRGG---VLSFQGGEMAGKSRVKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL++GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSLGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|425455819|ref|ZP_18835530.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
gi|389803212|emb|CCI17833.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
Length = 485
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 192/311 (61%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ S+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLDSNLIIRWGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSRV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + +I+ T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIKATYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+E G++PS DLG++++ +G S +GGE R+K++ + + K K+
Sbjct: 181 IELGNLPSFNDLGVTEAILDRRGFL----SFQGGEMAGKSRIKEYI--WDSDSLKTYKET 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G N+S K S WL+ GCLSPR +++E++K ++ + WL
Sbjct: 235 RNEML-GTNYSSKFSAWLSCGCLSPRYIYEEVQKYE------------QTRVKNDSTYWL 281
Query: 426 MFELLWRDFFR 436
+FELLWRDFFR
Sbjct: 282 IFELLWRDFFR 292
>gi|428222871|ref|YP_007107041.1| DASH family cryptochrome [Synechococcus sp. PCC 7502]
gi|427996211|gb|AFY74906.1| cryptochrome, DASH family [Synechococcus sp. PCC 7502]
Length = 501
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 184/311 (59%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLR HD+E+L A ++P+YC DPR + ++S GF KTG +RA FL+ES++
Sbjct: 6 IVWFRNDLRSHDHEALYRAIQTKAQIIPIYCIDPRHFAQTSFGFPKTGSFRAKFLLESLT 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR + GS+L++R G PE V+ ELA I A VY H EV+ +E+K E K+ +K
Sbjct: 66 DLRNKFISLGSNLIIRQGLPELVIPELAAQIQATDVYFHAEVTSEEIKVEAKLIDNLKKI 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL-KGLPSRGD 305
I+ + FWG+TLYH D LPF + +P + FR K VE T+ + LPS D
Sbjct: 126 SIKSESFWGNTLYHPDALPFAIDRLPELFTSFR---KEVEKFCTVNPCVPIPTYLPSLQD 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+E G++P+L +LGL + A + A GGET+AL+RL + +Q+ K+
Sbjct: 183 LEIGEMPTLEELGLEPAIADPR----AVIKFIGGETQALERLDYYF--WQSDLIATYKE- 235
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+++ G N+S K SPWLA+GC+SPR ++ +++K + + WL
Sbjct: 236 TRNAMLGGNYSSKFSPWLALGCISPRYIYAQIQKYE------------QERIKNDSTYWL 283
Query: 426 MFELLWRDFFR 436
+FELLWRD+FR
Sbjct: 284 VFELLWRDYFR 294
>gi|428213303|ref|YP_007086447.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
gi|428001684|gb|AFY82527.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
Length = 486
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 187/311 (60%), Gaps = 23/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+W+RNDLRVHD+E L A ++P+YCFDPR + K++ GF KTGP+RA FL+ESV+
Sbjct: 7 ILWYRNDLRVHDHEPLYRALETHAPIVPIYCFDPRQFSKTAYGFPKTGPFRAQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++LQ GS+L++++GKPE +L ++A + A A+Y H+EV+ +E+ E + +K
Sbjct: 67 NLRQSLQNLGSNLIIKIGKPEVILPQIAHQVNASAIYFHQEVTAEEIAVETALSQGVKSL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ +K FWG TLYH D LPF + +P + FR++V+ + LP ++
Sbjct: 127 NVALKSFWGHTLYHCDRLPFDIPNIPELFTHFRKQVEKTATPDS--CFPTPTQLPPLPEI 184
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKDG 365
E G++P+L +LG+ + A S+ P GGE+ + R++ F + + K ++G
Sbjct: 185 ETGNLPNLTELGVEKVAIASKAVLP----FTGGESAGIARMEDYFWTGDRLRTYKETRNG 240
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ G ++S K SPWL++GCLSPR ++ +++ T ND + WL
Sbjct: 241 ----MLGPDYSSKFSPWLSLGCLSPRYIYQQVQDYETQRIK----ND--------STYWL 284
Query: 426 MFELLWRDFFR 436
+FELLWRD+FR
Sbjct: 285 IFELLWRDYFR 295
>gi|428217984|ref|YP_007102449.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
gi|427989766|gb|AFY70021.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
Length = 500
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 184/323 (56%), Gaps = 35/323 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+W+RNDLR+HD+E L T +P+YCFDPR + + GF KTG +RA FL ESV
Sbjct: 7 IIWYRNDLRIHDHEPLWTVAKAGAIAIPIYCFDPRQFATTKYGFAKTGAFRAQFLTESVL 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHREVSHDEVKSEEKIEAAMK 244
DLR L+ GSDL+VR G+PE +L ELA+ + A+A+Y H+EV+ +E K E I +
Sbjct: 67 DLRDRLRQLGSDLIVRYGEPEQILPELAQKLNANANAIYYHQEVTSEETKVEAAIAQDLA 126
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSR 303
I+++ FWG TLYH DDLPF + +P + FR K VE TI AL L S
Sbjct: 127 ATDIKLQAFWGHTLYHRDDLPFSMERIPAIFTKFR---KQVEQEATINPALPMPTELISF 183
Query: 304 GD----------VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
D ++PG+IPSL LGL A + AA + GGE A+ RL ++
Sbjct: 184 NDLNDLNEIDAPLDPGEIPSLAQLGLEPIAPDDR----AAITFTGGEGAAIARLDQYF-- 237
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+Q + K + + GA++S K SPWLA GC+SPR +F++++K A ND
Sbjct: 238 WQNDCLRTYKQ-TRNGMLGADYSSKFSPWLAHGCISPRYIFEQVQKYEQDRVA----ND- 291
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
+ WL+FEL+WRD+FR
Sbjct: 292 -------STYWLVFELIWRDYFR 307
>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
Length = 488
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 187/312 (59%), Gaps = 25/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E L+ A V+P YCFD R + +S GF KTG +RA FL+ESV+
Sbjct: 7 LLWYRNDLRLHDHEPLHQALQTKAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR+N+++RGS+L+VR G PE V+ LAK + VY H+EV+ +EV E ++ A+ +
Sbjct: 67 DLRENVRSRGSNLLVRRGLPENVIPTLAKELDITTVYFHQEVTSEEVAVESALKNALSEI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSRGD 305
GI V+ FWGSTLYH DDLPF L ++P + FR K VE + TI K LPS
Sbjct: 127 GITVQTFWGSTLYHPDDLPFNLLKIPELFTNFR---KQVEKKSTIYPPFPTPKRLPSLPS 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKGNKD 364
VE G++P L D GL + P +GGET L RL + + + K ++
Sbjct: 184 VEVGELPQLADFGLESPIFDERAVLP----FQGGETAGLARLNDYFWKKDCLKVYKQTRN 239
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + G+++S K SPWLA+GCLSPR +++++++ ND + W
Sbjct: 240 G----MLGSDYSSKFSPWLALGCLSPRFIYEQVQQYEQEQIK----ND--------STYW 283
Query: 425 LMFELLWRDFFR 436
L+FEL+WRDFFR
Sbjct: 284 LVFELIWRDFFR 295
>gi|404450368|ref|ZP_11015352.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
gi|403764104|gb|EJZ25020.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
Length = 473
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 181/311 (58%), Gaps = 22/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLRVHD+ L A+ ++V V+PVYCFDPR + GF KTG +RA FL+ +V
Sbjct: 5 LVWFRNDLRVHDHAPLFAASQKAVEVIPVYCFDPRQFDTIELGFAKTGSFRADFLLSAVD 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRK L GSDL + GKPE + LA + DAV+ EV+ +E EE +E + E
Sbjct: 65 NLRKRLNEIGSDLFILQGKPEEEVSRLALELNVDAVFFSEEVTSEEKYVEEALEKKLWKE 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GI+ + FW STL+HL+DLPF + ++P + FR++ K I+KT LK LP D
Sbjct: 125 GIKTESFWQSTLFHLEDLPFPINQVPEVFTQFRKECEKYAHIKKTFPIPINLK-LPEL-D 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
V G+IPSL GL + A + + +GGE E L+RL+ + + +
Sbjct: 183 VLRGEIPSLKSFGLEKPDADPR----SVLVFEGGEEEGLRRLQTY---FWKNDCLKDYKQ 235
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + GA++S K SPWLA+GCLSPR +++E++K ++ + WL
Sbjct: 236 TRNGLLGADYSSKFSPWLALGCLSPRYIYEEIQKYEKAV------------KKNQSTYWL 283
Query: 426 MFELLWRDFFR 436
+FEL+WRD+FR
Sbjct: 284 IFELIWRDYFR 294
>gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis]
Length = 525
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 193/323 (59%), Gaps = 27/323 (8%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYR 177
+++ R ++ RNDLR HDNE L+ A + + ++P+YCFDPR Y ++ F KTGP+R
Sbjct: 2 ASSLPRTALCLLRNDLRCHDNEVLHWAQSHADRIVPLYCFDPRHYAQTYHYNFPKTGPFR 61
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA-VYAHREVSHDEVKSE 236
FL+ESV DLR+ L+ +GS+LVVR GKPE V+ +L +G+ A V H E + +E+ E
Sbjct: 62 LRFLLESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGSVASVSFHEEATKEELDVE 121
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKG-VEIRKTIEAL 294
+ + + G+EV+ FWGSTLYH DLPFK + ++P Y FR+ V+ +R ++
Sbjct: 122 KALIRVCTEHGVEVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKAVESQARVRPVLKME 181
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
Q+K LP ++E G+IPSL D G+++ + +A GGET+AL RL+ + E
Sbjct: 182 GQMKSLPP--EIEEGNIPSLEDFGMTEPLRDPR----SAFLCSGGETQALMRLQHYFWET 235
Query: 355 Q-AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
K ++G + G ++S K +PWLA+GC+SPR ++D+++K +A
Sbjct: 236 NLVASYKETRNG----LIGLDYSTKFAPWLALGCISPRYIYDQIQKYEKERTA------- 284
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
+ W++FEL WRD+FR
Sbjct: 285 -----NQSTYWVLFELAWRDYFR 302
>gi|356498450|ref|XP_003518065.1| PREDICTED: blue-light photoreceptor PHR2-like, partial [Glycine
max]
Length = 298
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/180 (64%), Positives = 141/180 (78%), Gaps = 8/180 (4%)
Query: 37 SFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKST 96
SFSL + P F+QPK + QP+K+KVPTQAS+LTH+SLS ++T PSK SFKST
Sbjct: 4 SFSLSTIFP----FVQPKNIPSTTLQPSKLKVPTQASSLTHLSLS-TTTPPPSKTSFKST 58
Query: 97 LSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVY 156
NPL +PLS+ PHRP DP N +RRA+++WF NDLR+ DNE L NN+S+SVLP+Y
Sbjct: 59 ---NPLHAPLSIAPHRPRDPPNATPLRRAALIWFCNDLRLLDNECLTATNNDSLSVLPIY 115
Query: 157 CFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
FDP DYGKS+S FDKTGPYRA+FLI+SVSDLR++LQAR SDL+VRV KPETVLVELAK
Sbjct: 116 FFDPSDYGKSASDFDKTGPYRAAFLIDSVSDLRRSLQARNSDLIVRVKKPETVLVELAKV 175
>gi|428769113|ref|YP_007160903.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
gi|428683392|gb|AFZ52859.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
Length = 491
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 189/317 (59%), Gaps = 24/317 (7%)
Query: 122 IRRASIVWFRNDLRVHDNESL-NTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
I +++WFRNDLR+HD+ L A + ++P YCFD R + +S GF KTG YRA F
Sbjct: 6 IMNTALIWFRNDLRIHDHAILARIAEGDYQRIIPFYCFDDRQFQTTSFGFAKTGKYRAKF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
LIESV+DLR++LQ G+DL+VR G PE ++ ++AK Y +E + +E+K E+++
Sbjct: 66 LIESVADLRESLQKLGTDLIVRKGIPEQIIPDIAKQYNVTEFYFSQEATEEEIKVEKRLI 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A+K I+VK W STLY DDLPF + +P + FR++++ I + E + K L
Sbjct: 126 KALKQLHIQVKSCWQSTLYQPDDLPFSIENLPDLFTHFRKQIEKKSIVE--ECFETPKKL 183
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPP 359
P ++ G+IP L DLGL ++ +SQ A KGGETEA++RLK + E +
Sbjct: 184 PPIPPIDTGNIPILSDLGL-ENFEVSQ---LAVLPFKGGETEAIKRLKSYFWEKDCLKVY 239
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K ++G + G ++S K SPWLA+GCLSPR +++E++K +
Sbjct: 240 KETRNG----MLGGDYSSKFSPWLALGCLSPRYIYEEVEKYE------------QERVKN 283
Query: 420 AGSNWLMFELLWRDFFR 436
+ WL+FELLWRDFFR
Sbjct: 284 DSTYWLIFELLWRDFFR 300
>gi|443318941|ref|ZP_21048182.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
gi|442781475|gb|ELR91574.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
Length = 494
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 180/310 (58%), Gaps = 20/310 (6%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W RNDLR+HD+ L A V+PVYC DPR +G++ GF KTG +RA FL+E+++
Sbjct: 4 LLWLRNDLRLHDHAPLQAALKTGAQVIPVYCLDPRQFGQTDFGFPKTGAFRAQFLLEALA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ G DLVVR G PE VL LA+ + D VY HREV+ +E E + + +
Sbjct: 64 DLRQSLRRLGGDLVVRQGFPEQVLPALAREVKCDRVYWHREVTPEETTVESALTRTLATQ 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ V++FWG+TLYH DDLPF L ++P + FR++V+ + R + + + LP +
Sbjct: 124 GVAVQHFWGATLYHPDDLPFPLEQLPDIFTQFRKRVER-DSRVSTPSPPPTQLLPLPQGL 182
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
EPG + SL +LGL + A GGET L RL + + A K K+
Sbjct: 183 EPGSLSSLQNLGLQPPIRDDR----ATLVFTGGETAGLARLHHYF--WAADCLKTYKE-T 235
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
+ + GA++S K SPWLA+GCLSPR + ++ T ND + WL+
Sbjct: 236 RNGLLGADYSSKFSPWLALGCLSPRYIHSAVQDYETQRVK----ND--------STYWLV 283
Query: 427 FELLWRDFFR 436
FELLWRD+FR
Sbjct: 284 FELLWRDYFR 293
>gi|97047702|sp|Q4KML2.2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
Short=zCRY-DASH
Length = 520
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 27/318 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
+SV DLR L+ GS L+VR GKPE V+ EL K +G+ + A H EV+ +E EEK++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ V+ FWGSTLYH DDLPF +G +P Y FR+ V+ +R + +Q+K
Sbjct: 125 ICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
PS +E G IP+ LG ++ + P +GGETEAL RLK + + A
Sbjct: 185 PPS--GLEEGPIPTFDSLGQTEPLDDCRSAFPC----RGGETEALARLKHYFWDTNAVAT 238
Query: 360 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G +FS K SPWLA+GC+SPR +++++KK +A
Sbjct: 239 YKETRNG----MIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA------------ 282
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FELLWRD+F+
Sbjct: 283 NQSTYWVIFELLWRDYFK 300
>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
gi|81834455|sp|Q7NMD1.1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
Length = 500
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 187/314 (59%), Gaps = 23/314 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VW+RNDLRVHD+E L +A +++ V+ +YCFDPR +GK+ GF+KTGP+RA FL+E
Sbjct: 4 KTVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLE 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV+DLR++L+ GSDL+VR G PE V+ L + AV+ H EV+ +E+ E ++AA+
Sbjct: 64 SVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ V+ FWG+TL H DDLPF + +P + FR++V + I + A +L
Sbjct: 124 APLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAPAKLP---P 180
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
V+PG+IP L DLGL + A KGGET L RL+++ +Q K
Sbjct: 181 LPAVDPGEIPQLADLGLESPVTDER----AVLQFKGGETSGLARLEEYF--WQKSLLKSY 234
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K + + GA++S K S WLA+GCLS R + ++++ T ND +
Sbjct: 235 KQ-TRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIK----ND--------ST 281
Query: 423 NWLMFELLWRDFFR 436
WL+FELLWRD+FR
Sbjct: 282 YWLIFELLWRDYFR 295
>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
Length = 520
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 27/318 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
+SV DLR L+ GS L+VR GKPE V+ EL K +G+ + A H EV+ +E EEK++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ V+ FWGSTLYH DDLPF +G +P Y FR+ V+ +R + +Q+K
Sbjct: 125 ICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
PS +E G IP+ LG ++ + P +GGETEAL RLK + + A
Sbjct: 185 PPS--GLEEGPIPTFDSLGQTEPLDDCRSAFPC----RGGETEALARLKHYFWDTNAVAT 238
Query: 360 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G +FS K SPWLA+GC+SPR +++++KK +A
Sbjct: 239 YKETRNG----MIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA------------ 282
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FELLWRD+F+
Sbjct: 283 NQSTYWVIFELLWRDYFK 300
>gi|443324015|ref|ZP_21052973.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
gi|442796190|gb|ELS05502.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
Length = 491
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 183/312 (58%), Gaps = 27/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+HD++ + A + ++P+YCFD R + K+S GF KTG +R+ FL+E+V+
Sbjct: 7 LIWYRRDLRLHDHKPMYQALQQEAQIIPLYCFDERQFAKTSFGFPKTGAFRSQFLLEAVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +L GS+L+VR G PE ++ LAK + AVY H EV+ +E+ E ++ A+
Sbjct: 67 DLRNSLSQLGSNLIVRRGLPEKIIPSLAKELEISAVYFHGEVTSEELAVEAALQKALSQI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
I VK FWG+TLYH DDLPF + ++P + FR+ V K + + +L LP D
Sbjct: 127 KISVKRFWGNTLYHPDDLPFSIEQIPELFTNFRKSVEKKSSVASSFAVPQELPPLP---D 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF--AAEYQAQPPKGNK 363
+ G++P L DLGL S+ A KGGET AL RL + + +Y K
Sbjct: 184 INLGELPQLSDLGLEAPKFDSR----AVLDFKGGETAALARLDSYIWSGDYLKDYKK--- 236
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ + GA++S K SPWLA+GCLSPR +++++++ A ND +
Sbjct: 237 --TRNGMLGADYSSKFSPWLALGCLSPRLIYEQVQE----YEAQRVKND--------STY 282
Query: 424 WLMFELLWRDFF 435
WL+FELLWRDFF
Sbjct: 283 WLIFELLWRDFF 294
>gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
Length = 483
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 187/314 (59%), Gaps = 22/314 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ IVWFRNDLRVHDN+ L A +++ +LPVYCFDPR Y +S GF KTG +RA FLIE
Sbjct: 13 QVKIVWFRNDLRVHDNDVLAKAASDADYLLPVYCFDPRQYETTSLGFAKTGAHRAQFLIE 72
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++++LR NL+A+GS LV+R+GKPE V+ +LAKA A AVYA +E+ +E + +++E +
Sbjct: 73 TLANLRANLEAKGSGLVIRIGKPEEVIADLAKATQAKAVYASQEIGTEEDATVKQLEKRL 132
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ ++ W L H DLPF L + + FR+++ +G+++R+ + D L
Sbjct: 133 WKNQVFLELLWTGNLIHPADLPFPLNSLSNVFTDFRKEIEQGLKVREAVTLPDTLP--LL 190
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
VE G +P L DLGL+ + ++ A KGGET LQR++ + +Q +
Sbjct: 191 PPGVEAGSLPKLTDLGLTHTTPDTR----AVLHFKGGETAGLQRIEDYI--WQRSLLQHY 244
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
KD + + GA++S K SPWLA G +S R+++ E+KK + +
Sbjct: 245 KD-TRNGLLGADYSTKFSPWLANGAISARTVYHEIKKYEQQV------------VKNKST 291
Query: 423 NWLMFELLWRDFFR 436
L+FELLWR++FR
Sbjct: 292 YHLVFELLWREYFR 305
>gi|408673564|ref|YP_006873312.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
gi|387855188|gb|AFK03285.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
Length = 475
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 188/310 (60%), Gaps = 23/310 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFRNDLR+HDNE+L A ++ +V+PVY FD R + + GF +TG +RA FLIE+V
Sbjct: 5 LFWFRNDLRLHDNEALIQAT-KAGNVIPVYIFDERQFINTPLGFKRTGTFRAKFLIEAVE 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR NLQ GS+L+V+VGKPE +L +LA+ A AVYA +EV+ +E E + +K
Sbjct: 64 NLRDNLQKIGSNLIVKVGKPEEILAQLAEKYEAVAVYASKEVTQEETIIEANLSKKLKPL 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
IE++ W +TLYH DLPF++ +P + FR+KV + +IR+T +A L + D
Sbjct: 124 NIEIELVWIATLYHARDLPFQINFLPDVFTEFRKKVERSAKIRRTFDAPKTLPKVDKSVD 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+ G++P+L LG + + K + + +GGET AL RL ++ + PK K+
Sbjct: 184 L--GEMPTLESLGYEK----PKFDKRSVLAFRGGETSALYRLDEYI--WDKDLPKTYKE- 234
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + G ++S K S WL++GC+SPR++++E+KK + A + W+
Sbjct: 235 TRNGLVGGDYSTKFSAWLSLGCISPRTIYEEVKKYEKEVEA------------NESTYWI 282
Query: 426 MFELLWRDFF 435
+FEL+WRD+F
Sbjct: 283 IFELIWRDYF 292
>gi|440749032|ref|ZP_20928282.1| Cryptochrome [Mariniradius saccharolyticus AK6]
gi|436482734|gb|ELP38832.1| Cryptochrome [Mariniradius saccharolyticus AK6]
Length = 475
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 20/313 (6%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R IVWFRNDLR+HDN +L+ A ++ V+PVYCFDPR +G+ G +K G RA FL E
Sbjct: 4 RRIIVWFRNDLRIHDNVTLSMACEKAEEVIPVYCFDPRHFGEIDLGMEKMGNLRAKFLKE 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+VS+LR+NLQ G+DLVV G PE + LA ++ A+A++ EV+ +E + ++ +E+
Sbjct: 64 TVSELRQNLQKLGADLVVLQGFPEKEIPNLAVSLQAEAIFFSEEVTDEEKQVDDALESTA 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+GI+ + FW TL+H+DDLPF +G+ P + FR++ + + + P +
Sbjct: 124 WKKGIKTRSFWQHTLFHIDDLPFPIGQTPEVFTQFRKECEKFCKVRLHASTPNAINFP-K 182
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
++E G IP+L + GL + +G KGGE E L+RL+ + N
Sbjct: 183 IEIEKGQIPALSEFGLEEPEDTGRG----VLMFKGGEQEGLRRLQTYFWNLDCLKDYKN- 237
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ + GAN+S K SPWLA+GCLSPR ++ E+K+ ND +
Sbjct: 238 --TRNGLLGANYSSKFSPWLALGCLSPRQIYWEVKRYEKERVK----ND--------STY 283
Query: 424 WLMFELLWRDFFR 436
WL+FEL+WRD+FR
Sbjct: 284 WLVFELIWRDYFR 296
>gi|448592440|ref|ZP_21651547.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
gi|445731445|gb|ELZ83029.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
Length = 496
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 186/329 (56%), Gaps = 39/329 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
++VWFR DLR+HDNE+L A V+PVYCFDPRDYG+ S G F KTG +R
Sbjct: 6 ALVWFRRDLRLHDNEALVDACGAD-QVVPVYCFDPRDYGQQSYGGPGSFDFRKTGFHRLR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ESV+DLR +L+ RGSDLVVRVG+PE VL ++A A+GAD+V H + +E + E +
Sbjct: 65 FRLESVADLRSSLRDRGSDLVVRVGRPEAVLPDVATAVGADSVSMHTWPTPEERQVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLK 298
+ A+ D G+E + FWG TL H DDLP L +P Y FR+ V+ IR+ + D
Sbjct: 125 QQALDDVGVESRRFWGHTLTHPDDLPMDLDALPDTYTTFRKAVENDASIREPLHTPD--- 181
Query: 299 GLPSRGDV--EPGDIPSLLDLGLSQSAAMSQGGKP--------AANSMKGGETEALQRLK 348
LP+R D EPG IP+L DL S A +P A + +GGET +R++
Sbjct: 182 -LPARPDSVPEPGAIPALSDLDGDVSNAAQVEDEPLASPNDEQATSLFEGGETAGRERVE 240
Query: 349 KFAAE-YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
+ E + K ++G + G ++S K SPWL GCLSPR + E+++
Sbjct: 241 SYIWEGDHLREYKETRNG----LVGLDYSSKFSPWLNEGCLSPRYVQSEVERYE------ 290
Query: 408 SKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ S + WL FEL WRDFF+
Sbjct: 291 ------DVRVSNDSTYWLTFELRWRDFFQ 313
>gi|410027954|ref|ZP_11277790.1| DASH family cryptochrome [Marinilabilia sp. AK2]
Length = 474
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 177/310 (57%), Gaps = 20/310 (6%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLRVHD+ L A ++ V+PVYCFDPR++ K S G DKTG +RA FLIE+V
Sbjct: 6 VVWFRNDLRVHDHAPLFYAAEKAEEVIPVYCFDPRNFKKVSLGIDKTGNHRAKFLIEAVD 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR NLQ+ G DLV+ GKPE VLV LAK A+A++ EV+ +E + E ++E
Sbjct: 66 NLRSNLQSLGGDLVIIQGKPEEVLVSLAKKHDAEAIFFSEEVTDEEKEVELQLEQNAWKH 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI+ +W S+LYH+ DLPF + + P + FR++ + + L + P +
Sbjct: 126 GIKTTAYWQSSLYHIQDLPFPVNQTPEVFTQFRKECEKFAKVQGTLPLPKKINFP-KNSF 184
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
GD+P L GL + S+ A KGGETE ++RL+ + E Q
Sbjct: 185 NLGDLPRLSTFGLKEPDLSSR----AVLVFKGGETEGIRRLQTYFWE---QDLLKEYKET 237
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
+ + GA++S K S W+++GCLSPR +++E+K+ + + WL+
Sbjct: 238 RNGLLGADYSSKFSAWISLGCLSPRYIYEEVKRYE------------KERKKNQSTYWLI 285
Query: 427 FELLWRDFFR 436
FEL+WRD+FR
Sbjct: 286 FELIWRDYFR 295
>gi|428776804|ref|YP_007168591.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
gi|428691083|gb|AFZ44377.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
Length = 483
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 183/311 (58%), Gaps = 22/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E L A+ ++P YCFD R++G + GF KTG +RA FL ESV+
Sbjct: 7 LIWYRNDLRVHDHEPLFRASKTQGQIIPFYCFDTREFGHTGFGFPKTGSFRAQFLQESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR+ L+ GS+L++RVG+PE ++ EL A+ + H EV+ +E++ E+ + ++
Sbjct: 67 NLRETLKNLGSNLMIRVGQPEIIIPELVTALNLTNLVYHAEVTAEEIRVEKALSKQLQSL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
G+ + +WGSTL+HLDDLP K+ ++P + +R+++ K EIR ++L LPS +
Sbjct: 127 GVTLTSYWGSTLHHLDDLPIKVDDLPDVFTQYRKRIEKTSEIRSCFPTPEKLPPLPS--E 184
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+ GD+P+L LG+ + +G GGE L RLK + +Q K K
Sbjct: 185 IATGDLPNLETLGVKLVSPDERG----VLKFVGGERAGLDRLKDYI--WQEDCLKVYKK- 237
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + G N S K SPWLA GCLSPR +++E++ E+ + WL
Sbjct: 238 TRNGMLGTNDSSKFSPWLARGCLSPRYVYEEVQSYE------------ENRVKNDSTYWL 285
Query: 426 MFELLWRDFFR 436
+FEL+WRD+FR
Sbjct: 286 IFELMWRDYFR 296
>gi|338210188|ref|YP_004654235.1| DASH family cryptochrome [Runella slithyformis DSM 19594]
gi|336304001|gb|AEI47103.1| cryptochrome, DASH family [Runella slithyformis DSM 19594]
Length = 479
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 182/311 (58%), Gaps = 20/311 (6%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
I WFRNDLR+HDNE A ++ V+P+Y FD R + + S G KTG +RA FL+ESV
Sbjct: 6 IYWFRNDLRLHDNEGFLKAIQDADEVIPIYVFDTRQFEEIGSLGIPKTGTFRAKFLLESV 65
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+LR NL+ +G++LV+++GKPE V+ ELA+ A+Y +E + +E E + +K
Sbjct: 66 QNLRDNLRKKGANLVIKLGKPEIVISELAREWDVTAIYTAKEATQEETDVETSLSKKLKV 125
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
I+ + FWG+TLYH DLPF + +P + FR+ V+G + + A + L
Sbjct: 126 YNIDFEVFWGATLYHPRDLPFWVSRLPDVFTDFRKVVEGKSVIRP--AFQEPIALRLPEG 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+E G +P + +L L + + + + AA KGGETEALQRL + ++ K K+
Sbjct: 184 LEFGKMPEIYELIL--FSQLPEVDRRAAFVFKGGETEALQRLNAYL--WETDHIKFYKE- 238
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + GAN+S K SPWLA GC+SPR +++E+KK A ND + WL
Sbjct: 239 TRNGLLGANYSSKFSPWLAYGCVSPRQIYEEVKKYEAQHGA----ND--------STYWL 286
Query: 426 MFELLWRDFFR 436
+FEL+WRD+FR
Sbjct: 287 IFELVWRDYFR 297
>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
Length = 430
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 181/314 (57%), Gaps = 24/314 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +IVWF+ DLRV DNE++ A +S ++PVYCFD + + GF KTG +RA FL+E
Sbjct: 3 KTAIVWFKTDLRVEDNETIIKAILQSEQIIPVYCFDDSHFETTKYGFKKTGSFRAQFLLE 62
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ DL KNL+A GS LV+ GKPE + ++AK A V++ REVS +E K+E+ ++ +
Sbjct: 63 SLQDLDKNLRAIGSGLVITKGKPEIEIPKIAKEYKAQKVFSKREVSFEEKKTEKMVQNEL 122
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
E++ F STLYH +DLPF + +P + FR+K + IR + +++ P
Sbjct: 123 FKLRCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQDATIRTVFKKPEKINS-PK 181
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ +P+L DLGL S+ AA KGGETEA+ RL + +Q N
Sbjct: 182 ---ITTLSLPTLEDLGLECKTIDSR----AAIQFKGGETEAINRLNHYF--FQTNSI-SN 231
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+ + G N+S K SPWLA+GC+SPR +++E+KK A ND S
Sbjct: 232 YKKTRNGMVGENYSSKFSPWLALGCISPRFIYNEIKKYELQFGA----ND--------SS 279
Query: 423 NWLMFELLWRDFFR 436
WL+FELLWRDFFR
Sbjct: 280 YWLIFELLWRDFFR 293
>gi|390942759|ref|YP_006406520.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
gi|390416187|gb|AFL83765.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
Length = 472
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 186/311 (59%), Gaps = 24/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HD+ +L +A +S ++PVYCFDPR + +++ GF KTG +RA FL+++V
Sbjct: 7 LVWFRNDLRLHDHAALFSALEKSEEIIPVYCFDPRMFKETNLGFRKTGNHRAKFLLQAVE 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+ NLQ GS+L++ G PE ++ + AK +G A+Y EV+ +E + E +E A
Sbjct: 67 NLKNNLQKVGSNLLILHGYPEDLIPQKAKELGVQAIYFSEEVTSEEKQVENALENAAYKL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GIE FW TL++L+DLPF + + P + FR++ K ++RKT A +K P+
Sbjct: 127 GIETASFWQITLFNLEDLPFPVNQTPEIFTQFRKECEKFSKVRKTFPAPKNIKS-PT--- 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+E GD P L GL A SQ A +GGE E ++RL+ + ++ K K+
Sbjct: 183 IEWGDFPILSKYGLENPAISSQ----AVMVFEGGEDEGIRRLQTYF--WKNDCLKTYKE- 235
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + GA++S K SPWLA+GCLSPR +F+E+K+ + + WL
Sbjct: 236 TRNGLLGADYSSKFSPWLALGCLSPRYIFEEVKRYE------------KERKKNQSTYWL 283
Query: 426 MFELLWRDFFR 436
+FEL+WRD+FR
Sbjct: 284 IFELIWRDYFR 294
>gi|428773120|ref|YP_007164908.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
gi|428687399|gb|AFZ47259.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
Length = 486
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 178/312 (57%), Gaps = 23/312 (7%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++WFRNDLR+HD + + A + E ++P YCFD R Y ++S GF KTG YRA +IESV
Sbjct: 5 LIWFRNDLRLHDQKCIYRAISAEPKYIIPFYCFDDRTYTQTSFGFPKTGKYRAKLIIESV 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL+K+LQ GS+LVV+ GK E + ++ + VY +E + +E E+K+ +
Sbjct: 65 TDLQKSLQKIGSNLVVKKGKTEEEISKIVEKYQITEVYFSKEATAEERAMEKKLTKILDK 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
+ +++K FW STLY DDLPF + E+P + FR++V K E+ T + L LP
Sbjct: 125 KQVKIKTFWQSTLYFPDDLPFSIKELPDLFTNFRKQVEKKAEVYNTFKTPSSLPPLPKNI 184
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
D+ G IP+L DLGL + +G + GGETEA++RL+ + E N
Sbjct: 185 DI--GKIPTLSDLGLEEFTKDDRG----VLTFMGGETEAIKRLQYYLWE---TDNISNYK 235
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
+ + G ++S K SPWLA GCLSPR ++ E++K + + W
Sbjct: 236 KTRNGMLGGDYSSKFSPWLAQGCLSPRLIYTEIEKYE------------QERVKNDSTYW 283
Query: 425 LMFELLWRDFFR 436
L+FELLWRDFFR
Sbjct: 284 LIFELLWRDFFR 295
>gi|427722807|ref|YP_007070084.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
gi|427354527|gb|AFY37250.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
Length = 518
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 188/311 (60%), Gaps = 20/311 (6%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+HD++ L TA + ++P+YCFD R++ +++ GF KTG +R FL+ESV+
Sbjct: 7 LLWYRRDLRLHDHKPLITALQQQAEIIPLYCFDSREFTQTAFGFPKTGNFRGQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++LQ +GS+L++ GKPE ++ +L + D VY HREV+ +E E++++ + +
Sbjct: 67 NLRRSLQQKGSNLLIYSGKPEVIISQLCRQFQIDTVYWHREVTAEETHIEKRLQKNLSQQ 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ V FWG+TL+ +++PF + ++P + FR+ V K I + + +L LPS
Sbjct: 127 NVSVGTFWGTTLHEPEEMPFGIPQVPEVFTQFRKTVEKYANIVQALPTPQELPPLPSELA 186
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+ G++P+L LGLS + +G + +GGET AL+RL+ + ++ K K
Sbjct: 187 MALGELPTLKQLGLSTPESDRRG----VLAFQGGETAALERLQDYF--WRGNHLKSYKQ- 239
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + G ++S K SPWLA+GCLS R + ++ + T A ND + WL
Sbjct: 240 TRNGLLGGDYSSKFSPWLALGCLSARQIAAQVSRYETERVA----ND--------STYWL 287
Query: 426 MFELLWRDFFR 436
+FELLWRD+FR
Sbjct: 288 IFELLWRDYFR 298
>gi|436838433|ref|YP_007323649.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
gi|384069846|emb|CCH03056.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
Length = 501
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 181/314 (57%), Gaps = 22/314 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
+ WFRNDLR+HDNE A ++ VLPVY FDP + + KTG R +FL+E+V
Sbjct: 17 LYWFRNDLRLHDNEGFAAACMQARQVLPVYVFDPAAFRLLPTLNLKKTGLLRTNFLLEAV 76
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR +L+ARG DL+VRVG P VL +LA+ I ADA+YA +EV+ +E E + +K
Sbjct: 77 ADLRSSLRARGGDLIVRVGDPARVLADLAEEIEADAIYASKEVTSEETDVESALSKRLKP 136
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
I++++FW STLYH+ DLPF + ++P + FR++V K V++R + D++ G
Sbjct: 137 LNIDIEFFWTSTLYHVRDLPFNVVKLPDVFTAFRQQVEKHVQVRSLVATPDRIN---LAG 193
Query: 305 DVEPGDIPSLLDLGL--SQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+E G +P+ G A ++ AA KGGE+ AL RL + + + K
Sbjct: 194 HIEAGSLPTPDTFGFDAETQAVAARPDNRAAVPFKGGESVALARLNAYI--WGRELLKTY 251
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K+ + + G ++S K S WLA GCLSPR ++ E+K+ + + +
Sbjct: 252 KE-TRNGLLGEDYSSKFSAWLAHGCLSPRQLYHEIKRYE------------QERVANEST 298
Query: 423 NWLMFELLWRDFFR 436
WL+FEL+WRDFFR
Sbjct: 299 YWLIFELIWRDFFR 312
>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
Length = 520
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 181/318 (56%), Gaps = 27/318 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+Y FDPR Y G F KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYSFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
+SV DLR L+ GS L+VR GKPE V+ EL K +G+ + A H EV+ +E EEK++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ V+ FWGSTLYH DDLPF +G +P Y FR+ V+ +R + +Q+K
Sbjct: 125 ICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
PS +E G IP+ LG ++ + P +GGETEAL RLK + + A
Sbjct: 185 PPS--GLEEGPIPTFDSLGQTEPLDDCRSAFPC----RGGETEALARLKHYFWDTNAVAT 238
Query: 360 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G +FS K SPWLA+GC+SPR +++++KK +A
Sbjct: 239 YKETRNG----MIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA------------ 282
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FELLWRD+F+
Sbjct: 283 NQSTYWVIFELLWRDYFK 300
>gi|448729303|ref|ZP_21711620.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
gi|445795250|gb|EMA45779.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
Length = 485
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 185/320 (57%), Gaps = 33/320 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR HDNE+L A +E +VLPVYCFDPR++G+++ G KTGPYRA FLIESV
Sbjct: 5 AVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFGEATFGLAKTGPYRAQFLIESV 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DLR +L+ GSDL VR GKPE V+ ELA GAD V+ H + +E E + + +
Sbjct: 65 RDLRGSLREAGSDLFVRQGKPENVVSELAAEHGADIVHYHTTPATEERAVEASVTDGLDE 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGLPSR- 303
GI + FWG TLYH++DLP ++ + + +R V+ G +R ++A + LP
Sbjct: 125 HGISSRGFWGKTLYHIEDLPTRVERIDDTFTPWRRTVEDGATVRDPLDAPTSVT-LPETV 183
Query: 304 ------GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE-YQA 356
GD EPG IP+ DLG+ + + + AA GGE+ L+RL ++ E
Sbjct: 184 SDAEGAGD-EPGTIPTPGDLGIEE----HEPDERAAIDFAGGESAGLRRLTEYVWEGDHL 238
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK-TATSISAASKWNDGES 415
+ K ++G + A++S K S WLA+GCLSPR + + +++ IS S +
Sbjct: 239 REYKETRNG----LLDADYSSKFSAWLALGCLSPRLIHEHVERYECERISNDSTY----- 289
Query: 416 GSSGAGSNWLMFELLWRDFF 435
WL+FELLWRDF
Sbjct: 290 --------WLVFELLWRDFM 301
>gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002]
gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002]
Length = 514
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 182/311 (58%), Gaps = 22/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+HD++ L A + + P YCFDPR +G F KTG +R FL E++
Sbjct: 7 LLWYRRDLRLHDHQPLQEALAQQAQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFLREAIQ 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR+NL+A+GSDL+VR PE ++ +L + D VY HREV+ +E + E K+ A++++
Sbjct: 67 DLRQNLRAKGSDLIVRQDIPEKLIPDLCQQWQIDVVYCHREVTAEETRVERKLRQALQEQ 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
G+ V+ FWG+TL+ DLPF + E+P + FR+ V K I + QL LP
Sbjct: 127 GVRVETFWGTTLHDPGDLPFGINEVPEVFTQFRKDVEKYAAIASPVPTPTQLPPLPE--T 184
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
V PG+IPSL DLGL + +G P +KGGET ++RL+ + ++ K K+
Sbjct: 185 VAPGEIPSLQDLGLPEPTIDPRGVLP----LKGGETAGMKRLQAYF--WEGDRLKVYKE- 237
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + GA++S K SPWLA+GCLS R + ++ + A + + WL
Sbjct: 238 TRNGLLGADYSSKFSPWLALGCLSARYIAAQVAEYEQKRIANN------------STYWL 285
Query: 426 MFELLWRDFFR 436
+FELLWRD+FR
Sbjct: 286 IFELLWRDYFR 296
>gi|373954151|ref|ZP_09614111.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
gi|373890751|gb|EHQ26648.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
Length = 493
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 184/315 (58%), Gaps = 25/315 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VWFRNDLR+HDNE L A ++ VLPV+CFD + + G KTG +R FL+E
Sbjct: 12 KTILVWFRNDLRIHDNEILVEALRKADKVLPVFCFDNFYFKITRYGTRKTGDFRTRFLLE 71
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+V+DLRK LQ G++L+VR G P ++ +LA+ VY HREV+ +E K+EA +
Sbjct: 72 AVADLRKTLQQHGAELIVRSGDPVDIIPQLAEEYHVSEVYHHREVAFEETDISAKVEAVL 131
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ + +K+F G T YH +DLPF + ++P + FR+KV + IR E + P
Sbjct: 132 WKKKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKKVERDSSIRPCFETPGNISIPPI 191
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKG 361
PG+IP+L LG + S+ A KGGETEAL+RL ++ E + K
Sbjct: 192 D---HPGEIPTLQQLGFDEPVDDSR----AVLHFKGGETEALKRLHEYFWESDCLKTYKT 244
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + GA++S K SPWL++GCLS R ++ E+K+ + E G++ +
Sbjct: 245 TRNG----LLGADYSSKFSPWLSVGCLSVRQVYWEVKRY-----------EQERGANDS- 288
Query: 422 SNWLMFELLWRDFFR 436
+ WL+FELLWRD+FR
Sbjct: 289 TYWLIFELLWRDYFR 303
>gi|332662834|ref|YP_004445622.1| DASH family cryptochrome [Haliscomenobacter hydrossis DSM 1100]
gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
Length = 454
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 182/318 (57%), Gaps = 20/318 (6%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRAS 179
++R +IVWFR DLR+HDNE+L A + V+PV+ FD R + GK+S GF KTG YRA
Sbjct: 2 TMKRRAIVWFRQDLRLHDNEALQDALRNAYEVIPVFIFDERTFKGKTSFGFPKTGKYRAQ 61
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+IESV+DLR++L+ SDL+VRVGK E +L +AK ++ +RE + +E + ++++
Sbjct: 62 FIIESVADLRQSLRKLNSDLIVRVGKTEDILFSMAKECKTSWIFCNRERTAEEARIQDEL 121
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLK 298
E + G E++Y G LY+ DLPF + P + FR++V + V +R+ + D+
Sbjct: 122 ENRLWSIGQEMRYNRGKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPLSKPDRTF 181
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P + GDIPSL +LG + A S KGGETE ++RL+ + E
Sbjct: 182 N-PLSFEFPAGDIPSLEELG--HNVDDFAKDPRAVLSFKGGETEGIKRLQYYLWETDLIK 238
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
N + + G ++S K+SPWLA GCLSP+ ++ ELKK A
Sbjct: 239 ---NYKETRNGLLGGDYSSKLSPWLAQGCLSPKLIYHELKKYEAQRGA------------ 283
Query: 419 GAGSNWLMFELLWRDFFR 436
+ WL FELLWRDFFR
Sbjct: 284 NESTYWLFFELLWRDFFR 301
>gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
Length = 499
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 189/324 (58%), Gaps = 27/324 (8%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG + SI+WFRNDLR+ DNE+L A S SVLPVYC DPR +G + F KTG
Sbjct: 20 NGKGV---SIMWFRNDLRIVDNEALFKAWASSSSVLPVYCVDPRHFGTTHYFKFPKTGEL 76
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FL+ES+ DL+KNL+ RG DLV+R G PE +L L +A+GA +YA E +E++ E
Sbjct: 77 RAQFLLESLVDLKKNLKKRGLDLVIRSGNPEFILPLLVEAVGAHTIYAQEETCSEELQVE 136
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALD 295
+ ++ ++ + +++ WG+T+YHL+DLPF +P Y FR+ V+ +R ++
Sbjct: 137 KAVKKSIGTKA-KLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCLKLPQ 195
Query: 296 QLKGLPSRGDVEPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
L LP + GD +P+L DLGL +S AA GGET A+QRL ++
Sbjct: 196 TLGPLPDSLGEKVGDLDKVPNLSDLGLRPREQVSL----AAMQFTGGETAAIQRLCEY-- 249
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+ + N + + GA++S K SPWLA G +SPR +++E A+ K+
Sbjct: 250 -FWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIYEE---------ASIKYEK 299
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+ ++ + W++FEL+WRD+FR
Sbjct: 300 ERTANN--STYWVLFELIWRDYFR 321
>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
gi|82239825|sp|Q75WS4.1|CRYD_XENLA RecName: Full=Cryptochrome DASH
gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
Length = 523
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 183/317 (57%), Gaps = 25/317 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE L+ A+ + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 6 RVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEA 241
ESV DLR L+ +GS+L++R GKPE V+ +L K +G AV H E + +E E ++
Sbjct: 66 ESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQ 125
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
A GI+ + FWGSTLYH +DLPF+ + +P Y FR+ V+ ++R T + D+LK
Sbjct: 126 ACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPDKLKP 185
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LPS +E G +PS D + P + GGE++ALQRL+ + ++
Sbjct: 186 LPS--GLEEGSVPSHEDFDQQDPLTDPRTAFPCS----GGESQALQRLEHYF--WETNLV 237
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
KD + + G ++S K +PWLA+GC+SPR +++++ K +A
Sbjct: 238 ASYKD-TRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERTA------------N 284
Query: 420 AGSNWLMFELLWRDFFR 436
+ W++FELLWRD+FR
Sbjct: 285 QSTYWVIFELLWRDYFR 301
>gi|406662895|ref|ZP_11070977.1| Cryptochrome DASH [Cecembia lonarensis LW9]
gi|405553063|gb|EKB48369.1| Cryptochrome DASH [Cecembia lonarensis LW9]
Length = 474
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 184/312 (58%), Gaps = 24/312 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLRVHD+ L A+ ++ V+PVYCFDPR++GK + DKTG +RA FLIESV
Sbjct: 6 IVWFRNDLRVHDHAPLFYASQKAEEVIPVYCFDPRNFGKVNLEIDKTGNHRARFLIESVD 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+ NL G DLV+ GKPE +LV++AK DA++ EV+ +E K E +E
Sbjct: 66 NLKNNLVNLGGDLVILQGKPEELLVDIAKKYQVDAIFFSEEVTSEEKKVELNLEGHAWKH 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GI+ +W S+LY++ DLPF + + P + FR++ K +++ T+ Q+K + D
Sbjct: 126 GIKTTAYWQSSLYNIQDLPFPVMQTPEVFTQFRKECEKFAKVQPTLPTPKQIKFPNNLND 185
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQPPKGNKD 364
+ G++P L GL + S+ + KGGETE ++RL+ + E + K ++
Sbjct: 186 L--GEMPELSTFGLKEPDHSSR----SVLVFKGGETEGIRRLQAYFWEKDLLKVYKETRN 239
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + G+++S K S WL+MGCLSPR +++E+K+ + + W
Sbjct: 240 G----LLGSDYSSKFSAWLSMGCLSPRFIYEEVKRYE------------KERKKNQSTYW 283
Query: 425 LMFELLWRDFFR 436
L+FEL+WRD+FR
Sbjct: 284 LIFELIWRDYFR 295
>gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
Length = 499
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 187/324 (57%), Gaps = 27/324 (8%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG + SI+WFRNDLR+ DNE+L A S SVLPVYC DPR +G + F KTG
Sbjct: 20 NGKGV---SIMWFRNDLRIVDNEALFKAWASSSSVLPVYCVDPRHFGTTHYFKFPKTGEL 76
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FL+ES+ DL+KNL+ RG DLV+R G PE +L L +A+GAD +YA E +E++ E
Sbjct: 77 RAQFLLESLVDLKKNLKKRGLDLVIRSGNPEFILPSLVEAVGADTIYAQEETCSEELQVE 136
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALD 295
+ ++ ++ + +++ WG+T+YHL+DLPF +P Y FR+ V+ +R ++
Sbjct: 137 KAVKKSIGTKA-KLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCLKLPQ 195
Query: 296 QLKGLPSRGDVEPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
L LP + GD +P+L LGL S AA GGET A+QRL ++
Sbjct: 196 TLGPLPDSLGEKVGDLDKVPNLSHLGLRPREQSSL----AAMQFAGGETAAIQRLCEY-- 249
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+ + N + + GA++S K SPWLA G +SPR + +E A+ K+
Sbjct: 250 -FWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIHEE---------ASIKYEK 299
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+ ++ + W++FEL+WRD+FR
Sbjct: 300 ERTANN--STYWVLFELIWRDYFR 321
>gi|405958349|gb|EKC24485.1| Eukaryotic translation initiation factor 2-alpha kinase 4
[Crassostrea gigas]
Length = 1998
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 182/318 (57%), Gaps = 29/318 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLI 182
+ I FRNDLR+HDNE L AN + VLP+Y FDPR +G + GF KTGP+R FL+
Sbjct: 6 KTIICLFRNDLRIHDNEVLQWANRNADFVLPMYIFDPRHFGGTYHFGFPKTGPHRTKFLL 65
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE-KIEA 241
ES+ DLRKNL+ RGS L VR GKP L ++ +G +V H V H+EV EE +E
Sbjct: 66 ESIQDLRKNLKIRGSGLAVRKGKPHEELKKMIDMLGQSSV--HSVVFHEEVTQEELDVEK 123
Query: 242 AMKDE-GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKG 299
++K G+ +K FWG TLYH +DLPF + P Y FR++V+ +RK ++ +
Sbjct: 124 SIKKHCGVNIKTFWGHTLYHREDLPFSPSQTPDVYTQFRKRVESQAPVRKCLDMPKSFRP 183
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LP VE G+IP+ DLG+ + + GGE+ A+ RL + E A
Sbjct: 184 LPE--GVEEGEIPTNKDLGVEDPVTDPR----SVVDFLGGESVAIDRLHHYLWETDAIAT 237
Query: 360 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + GA++S K S WLA+G LSPR +F E+K+ N+ S +S
Sbjct: 238 YKETRNG----LLGADYSTKFSVWLALGSLSPRHIFWEVKRYE---------NERTSNNS 284
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FEL+WRD+FR
Sbjct: 285 ---TYWVLFELIWRDYFR 299
>gi|449492091|ref|XP_004176864.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Taeniopygia
guttata]
Length = 488
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 182/317 (57%), Gaps = 27/317 (8%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIE 183
+I R DLR HDN+ L+ A + + V+P+YCFDPR Y G KTGP+R FL+E
Sbjct: 7 TAICLLRCDLRAHDNQVLHWAQHNADFVIPLYCFDPRHYLGTHCYRLPKTGPHRLRFLLE 66
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-DAVYAHREVSHDEVKSEEKIEAA 242
SV DLR+ L+ +GS LVVR GKPE V+ +L +G+ AV H E + +E+ E+ +
Sbjct: 67 SVKDLRETLKKKGSTLVVRKGKPEDVVCDLITQLGSVTAVVFHEEATQEELDVEKGLCQV 126
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGL 300
+ G++++ FWGSTLYH DDLPF+ + +P Y F + ++ G ++R T+ DQLK
Sbjct: 127 CRQHGVKIQTFWGSTLYHRDDLPFRPIDRLPDVYTHFEKGLESGAKVRPTLRMADQLK-- 184
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQPP 359
P +E G IP++ D G + P + GGET+AL RL+ + +
Sbjct: 185 PLAPGLEEGSIPTMEDFGQKDPVDDPRTAFPCS----GGETQALMRLQYYFWDTNLVASY 240
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K ++G + G ++S K +PWLA+GC+SPR ++++++K +A
Sbjct: 241 KETRNG----LVGMDYSTKFAPWLALGCISPRYIYEQIQKYERERTA------------N 284
Query: 420 AGSNWLMFELLWRDFFR 436
+ W++FELLWRD+FR
Sbjct: 285 ESTYWVLFELLWRDYFR 301
>gi|448578492|ref|ZP_21643927.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
gi|445727033|gb|ELZ78649.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
Length = 508
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 187/339 (55%), Gaps = 47/339 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG----FD--KTGPYRAS 179
++VWFR DLR+HDNE+L A V+PVYCFDPRDY + S G FD KTG +R
Sbjct: 6 ALVWFRRDLRLHDNEALVDACGAD-RVVPVYCFDPRDYCQQSYGGPDSFDVRKTGLHRLR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ESV+DLR +L+ RGSDLVVR+G+PE VL ++A A+GAD+V H + +E + E +
Sbjct: 65 FRLESVADLRSSLRDRGSDLVVRIGRPEAVLPDVATAVGADSVSMHTWPTPEERQVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLK 298
+ A+ D G+E + FWG TL H DDLP LG +P Y FR+ V+ IR+ + +L
Sbjct: 125 QQALDDVGVEPRRFWGHTLTHPDDLPMDLGALPDTYTTFRKAVENDASIREPLHT-PELP 183
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS--------------------MKG 338
LP EPG+IP+L DL S A+ +P A+ +G
Sbjct: 184 ALPD-SVPEPGEIPALSDLDEDVSNAVQAEDEPLASPNNEQATPSEQATPSEQAIPLFEG 242
Query: 339 GETEALQRLKKFAAE-YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL 397
GET +R++ + E + K ++G + G ++S K SPWL GCLSPR + E+
Sbjct: 243 GETAGRERVESYIWEGDHLREYKETRNG----LVGRDYSSKFSPWLNEGCLSPRYVQSEV 298
Query: 398 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
++ + S + WL FEL WRDFF+
Sbjct: 299 ERYE------------DVRVSNDSTYWLTFELRWRDFFQ 325
>gi|448734435|ref|ZP_21716661.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
gi|445800483|gb|EMA50838.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
Length = 479
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 182/312 (58%), Gaps = 23/312 (7%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR HDNE+L A +E +VLPVYCFDPR++ ++ KTGPYRA FL++SV
Sbjct: 5 AVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFDETMFDLPKTGPYRARFLVDSV 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DLR++L+ G DL+VR GK E V+ +LA GAD V+ H + +E E + + +
Sbjct: 65 RDLRRSLRQAGGDLLVRQGKTENVVPQLAAEHGADIVHYHTTPATEERAIENGVTDGLDE 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGLPSRG 304
GI+ + FWG TLYH++DLP ++ + + +R+ V+ G +R ++A + LP
Sbjct: 125 HGIDSRDFWGKTLYHVEDLPTRVERIDDTFTPWRQTVEDGATVRDPLDAPTSIV-LPESA 183
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE-YQAQPPKGNK 363
EPG IP+ DLG+ + + AA GGE+ L+RL ++ E + K +
Sbjct: 184 GDEPGTIPTPGDLGIEEREPDDR----AAIEFVGGESAGLRRLTEYVWEGDHLREYKETR 239
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+G + GA++S K S WLA+GCLSPR + + +++ A ND +
Sbjct: 240 NG----LLGADYSSKFSAWLAVGCLSPRLIHEHVERYERERVA----ND--------STY 283
Query: 424 WLMFELLWRDFF 435
WL+FELLWRDF
Sbjct: 284 WLVFELLWRDFM 295
>gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus
(Silurana) tropicalis]
Length = 523
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 180/322 (55%), Gaps = 27/322 (8%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRA 178
AA R I RNDLR+HDNE L+ A+ + ++P+YCFDPR YG + F KTGP+R
Sbjct: 2 AARARVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYGGTHYFNFPKTGPHRL 61
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEE 237
FL+ESV DLR L+ RGS+L++R GKPE ++ L K +G AV H EV+ + S
Sbjct: 62 KFLLESVQDLRNTLKERGSNLLLRRGKPEEIIAGLVKQLGNVSAVTLHEEVTVVPLYSYN 121
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALD 295
I G+ + FWGSTLYH +DLPF+ + +P Y FR+ + ++R T + D
Sbjct: 122 PILWPPDWSGLRYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAAETQGKVRSTFQMPD 181
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
+LK LPS +E G +P+ D + P GGET+ALQRL + E
Sbjct: 182 RLKPLPS--GLEEGSVPTHQDFDQQDPLTDPRSAFPCC----GGETQALQRLHHYFWETN 235
Query: 356 -AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
K ++G + G ++S K +PWLA+GC+SPR ++++++K +A
Sbjct: 236 LVASYKDTRNG----LIGIDYSTKFAPWLALGCISPRYIYEQIRKYEKERTA-------- 283
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
+ W++FELLWRD+FR
Sbjct: 284 ----NQSTYWVIFELLWRDYFR 301
>gi|325105098|ref|YP_004274752.1| DASH family cryptochrome [Pedobacter saltans DSM 12145]
gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
Length = 433
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 182/320 (56%), Gaps = 38/320 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +VWFRNDLR+HDNE L A +S ++PVY FDPR Y +S G KTG RA F+I+
Sbjct: 4 RTILVWFRNDLRIHDNEILIEATLKSTEIVPVYIFDPRYYTDTSYGTKKTGKLRAQFIID 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV+DL+K+L+A G DL+V GKPE VL +L K D VY HREV+ +E +E A+
Sbjct: 64 SVTDLKKSLKALGGDLLVVKGKPEEVLPQLIKEYHVDEVYHHREVASEETDISSAVEDAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ +K+F G TLYH +DLPF + ++P + FR+KV + EIR E Q+ +P
Sbjct: 124 WKSQVNLKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVEREGEIRDPFETPGQI-SVPD 182
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAAEYQA 356
+ ++P+L DLG +S + S+KGGE+ L RL K EY+A
Sbjct: 183 --SLASSEVPALEDLGFERSEQLDA-------SIKGGESSGLNRLNEYLWEKDLLKEYKA 233
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
+ + + G N + ++SPWL++GC+SPR ++ ELK+ + E G
Sbjct: 234 K---------RNLLTGFNNNSQLSPWLSLGCISPRKVYWELKRY-----------EHEKG 273
Query: 417 SSGAGSNWLMFELLWRDFFR 436
+ N L ELL+RDFFR
Sbjct: 274 GTD-NINLLFNELLFRDFFR 292
>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
ATCC 33406]
gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cytophaga hutchinsonii ATCC 33406]
Length = 434
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 176/314 (56%), Gaps = 24/314 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ SIVWF+ DLR+HDNE+L A +S ++PVYC D + + GF KTG +RA FL+E
Sbjct: 2 KRSIVWFKTDLRLHDNETLVRAIEQSDEIIPVYCLDEDHFKITPFGFQKTGNFRAQFLLE 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DL NL+ GS L+V GKPET L ++ K A V+A REV+++E ++E ++E +
Sbjct: 62 SLNDLDTNLRKLGSGLIVVRGKPETELYKIVKQYEAFKVFAKREVAYEEQQTEARVEKEI 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
G + F STLYH DLPF + ++P + FR+KV K IR + +K P+
Sbjct: 122 WKLGCTFESFSTSTLYHAQDLPFSIKDIPEVFTNFRKKVEKESSIRSVFQKPAHIKS-PA 180
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ +P++ LGL + A GGE+E +RL + E Q N
Sbjct: 181 MPQLR---LPTVKGLGLQPVIQDPR----AVMKFTGGESEGCKRLTSYLFETQLISHYKN 233
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
D + G+++S K SPWLA+GCLSPR ++ ELKK + SA +
Sbjct: 234 ---TRDGMIGSDYSTKFSPWLALGCLSPREIYTELKKYESRFSA------------NEST 278
Query: 423 NWLMFELLWRDFFR 436
WL+FELLWRD+FR
Sbjct: 279 YWLIFELLWRDYFR 292
>gi|383322099|ref|YP_005382952.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325268|ref|YP_005386121.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491152|ref|YP_005408828.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436419|ref|YP_005651143.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|97048023|sp|P77967.2|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|339273451|dbj|BAK49938.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|359271418|dbj|BAL28937.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274588|dbj|BAL32106.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277758|dbj|BAL35275.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958277|dbj|BAM51517.1| DNA photolyase [Bacillus subtilis BEST7613]
Length = 489
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 181/315 (57%), Gaps = 31/315 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HD+E L+ A +++ VYC+DPR + ++ GF KTGP+R++FL +SV
Sbjct: 9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQ 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L ++LQ G+ L+V G PE V+ ++AK I A +Y HREV+ +E+ E + +
Sbjct: 69 NLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTIL 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV--KGVEIRKTIEALDQLKGLPSRG 304
GIE K +WGSTL H +DLPF + ++P + FR+ + K + IR A QL LPS
Sbjct: 129 GIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL--LPS-- 184
Query: 305 DVEPGDIPSL-LDLGLSQSAAMSQGG--KPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
P++ L+L Q + + +GGET L RL+ + + K
Sbjct: 185 -------PNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYF--WHGDRLKD 235
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
K+ + + GA++S K SPWLA+GCLSPR ++ E+K+ + S
Sbjct: 236 YKE-TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYE------------QERVSNDS 282
Query: 422 SNWLMFELLWRDFFR 436
++WL+FELLWRDFFR
Sbjct: 283 THWLIFELLWRDFFR 297
>gi|432928263|ref|XP_004081133.1| PREDICTED: cryptochrome DASH-like [Oryzias latipes]
Length = 521
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 178/317 (56%), Gaps = 25/317 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE A + ++P+YCFDPR Y G + F KTGP+R FL+
Sbjct: 5 RIVICLLRNDLRLHDNELFFWAQKNADHIVPLYCFDPRHYVGTYNFNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-DAVYAHREVSHDEVKSEEKIEA 241
+SV DLR L ++GS+LVVR GKPE V+ +L K +G+ +V H EV+ +E+ E+K++
Sbjct: 65 DSVRDLRNTLLSKGSNLVVRRGKPEEVVADLIKQLGSVSSVAFHEEVASEELNVEKKVKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKG 299
++V WGSTL+H DDLPF + +P Y FR+ V+ +R D+L
Sbjct: 125 VCAQMEVKVHTCWGSTLFHRDDLPFPHMARLPDVYTEFRKAVESKSRVRPVFPTPDRLNS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LP +E G IP+ DL ++ + P + GGE++AL RLK + + A
Sbjct: 185 LPP--GLEGGAIPTAEDLEQTEPETDPRSAFPCS----GGESQALARLKHYFWDTDAV-- 236
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ + G ++S K SPWLAMGC+SPR ++ ++KK + ++
Sbjct: 237 -ATYKETRNGLIGVDYSTKFSPWLAMGCISPRYIYHQIKKYE------------QERTAN 283
Query: 420 AGSNWLMFELLWRDFFR 436
+ W++FELLWRD+F+
Sbjct: 284 QSTYWVIFELLWRDYFK 300
>gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
Length = 483
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 172/313 (54%), Gaps = 22/313 (7%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VW RNDLRV D+ L A + V+PVYCFDPR +G + K RA FL ES
Sbjct: 4 TALVWIRNDLRVRDHAPLRYAADHYDQVIPVYCFDPRHFGTTMFDLPKMSSIRARFLRES 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
V DLR ++Q G+DLVVR G+PE +L EL + GA+ V +E+ +E E +E A++
Sbjct: 64 VQDLRDSVQDLGADLVVRRGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETAVEDALR 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
D G +FWG TLYH+DD+PF ++P Y FR+ V K +R T++A D L LP
Sbjct: 124 DTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDSLLPLPE 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
D+ PG IP+L +LG + + G +GGE+ R+ ++ ++ K
Sbjct: 184 --DLNPGSIPTLDELGFDDDGTVDERG---VLPFRGGESRGHDRIDEYI--WRGDFLKKY 236
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K + + GAN+S K S WLA GC++PR + +E+++ + +
Sbjct: 237 K-ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYE------------DQRVDNKST 283
Query: 423 NWLMFELLWRDFF 435
W+ FEL+WRDFF
Sbjct: 284 YWMKFELIWRDFF 296
>gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
Length = 483
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 172/313 (54%), Gaps = 22/313 (7%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VW RNDLRV D+ L A + V+PVYCFDPR +G + K RA FL ES
Sbjct: 4 TALVWIRNDLRVRDHAPLRYAADHYDQVIPVYCFDPRHFGTTMFDLPKMSSIRARFLRES 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
V DLR ++Q G+DLVVR G+PE +L EL + GA+ V +E+ +E E +E A++
Sbjct: 64 VQDLRDSVQDLGADLVVRGGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETAVEDALR 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
D G +FWG TLYH+DD+PF ++P Y FR+ V K +R T++A D L LP
Sbjct: 124 DTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDSLLPLPE 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
D+ PG IP+L +LG + + G +GGE+ R+ ++ ++ K
Sbjct: 184 --DLNPGSIPTLDELGFDDDGTVDERG---VLPFRGGESRGHDRIDEYI--WRGDFLKKY 236
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K + + GAN+S K S WLA GC++PR + +E+++ + +
Sbjct: 237 K-ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYE------------DQRVDNKST 283
Query: 423 NWLMFELLWRDFF 435
W+ FEL+WRDFF
Sbjct: 284 YWMKFELIWRDFF 296
>gi|448583117|ref|ZP_21646586.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445730074|gb|ELZ81666.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 504
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 180/339 (53%), Gaps = 46/339 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+HDNE+L A + + VLPVYC DPR+YG G FDKTG +RA
Sbjct: 6 SLAWFRRDLRLHDNEALAAACD-ADGVLPVYCLDPREYGDRPFGGPDSFDFDKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES+SDLR +L+ RGSDLVVR G PE+VL ELA + AD V H + +E E +
Sbjct: 65 FRLESLSDLRSSLRERGSDLVVREGTPESVLPELAATVDADFVTVHTRPTPEESSVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E + +G++++ FWG TL HLDDLP L E+P Y FR+ V+ + E D +
Sbjct: 125 ERELGGDGVDLRRFWGHTLTHLDDLPMALSEVPDTYTTFRKAVESAV--EGDEGGDAGRS 182
Query: 300 LPSRGDVEP---------------------GDIPSLLDL-GLSQSAAMSQGGKPAANSMK 337
S GD +P GD+PSL L G + + + S
Sbjct: 183 GESAGDGDPAGRDPLSEPDVPPLPVDAPVAGDLPSLSTLVGTADAESARASDDRGVLSFD 242
Query: 338 GGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL 397
GGET AL R++ + + + K+ + + GA++S K SPWL GCLSPRS+ E+
Sbjct: 243 GGETAALDRVESYI--WTGDHLREYKE-TRNGMLGADYSSKFSPWLNEGCLSPRSVKAEV 299
Query: 398 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ ND + WL+FEL WRDFF+
Sbjct: 300 DRYEDRRVE----ND--------STYWLVFELRWRDFFQ 326
>gi|434388808|ref|YP_007099419.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
gi|428019798|gb|AFY95892.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
Length = 503
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 184/314 (58%), Gaps = 28/314 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD++ L A + S++P YCFD R +G++S GF KTG +RA FL+ESV+
Sbjct: 7 LIWYRNDLRLHDHQPLTQALKDGASIIPFYCFDDRQFGQTSFGFPKTGGFRAQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
D + + ++ GS+L++R G E ++ +L + +G VY H+EV+ +E+ +EAA+K
Sbjct: 67 DFQHSYRSLGSELIIRRGLTEEIIPQLVEPLGITDVYYHQEVTPEEIAVSTALEAALKAV 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK--TIEALDQLKGLPSRG 304
+ + FWG TL+ L DLPF L +P + FR++V+ RK T L LP
Sbjct: 127 NVNCRSFWGHTLHLLQDLPFTLPNVPELFTNFRKEVE----RKAPTPTCLPAPTSLPPLS 182
Query: 305 -DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY-QAQPPKGN 362
+++PG +P++ DL ++ S+ + +GGET + RL ++ E + + K
Sbjct: 183 VNIDPGTLPTIEDLRVTAPQPDSR----RVLAYRGGETAGIDRLNEYIWERDRLRVYKET 238
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + GA++S K S WLA+GCLSPR ++ ++KK + +
Sbjct: 239 RNG----MLGADYSSKFSAWLALGCLSPRYIYQQVKKYE------------DERIENDST 282
Query: 423 NWLMFELLWRDFFR 436
WL+FELLWRD+FR
Sbjct: 283 YWLIFELLWRDYFR 296
>gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 566
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 184/323 (56%), Gaps = 30/323 (9%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG I +I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG
Sbjct: 80 NGKGI---TILWFRNDLRVLDNDALYKAWSSSDTLLPVYCLDPRLFHTTHFFNFPKTGAL 136
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R FL+E + DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +E+ E
Sbjct: 137 RGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGAHTVFAHKETCSEELHVE 196
Query: 237 EKIEAAMK--DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEA 293
+ +K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR +
Sbjct: 197 RLVNQGLKGVGNGTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRI 256
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
L +PS D GD+P+L LG+ + +++G + GGE+ + R+ F
Sbjct: 257 PLSLGPIPSVDDW--GDVPTLEQLGI-EPQEVTRGMR-----FVGGESAGVGRV--FEYF 306
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
++ K KD + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 307 WKKDLLKVYKD-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS---- 361
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
+ W++FEL+WRD+FR
Sbjct: 362 --------TYWVLFELIWRDYFR 376
>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 486
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 184/313 (58%), Gaps = 26/313 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD-KTGPYRASFLIESV 185
++WFR DLR+ D++ L A + ++P+YC DPR +G++S G +T P+R FL+ES+
Sbjct: 4 LLWFRTDLRLLDHQPLTRACQQGSPLIPLYCLDPRQFGETSLGLRPRTSPFRGQFLLESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR+ L++RGSDLV+R G+PE V+ LA+ G +AVYAH EV +E + +E A++
Sbjct: 64 ADLRQQLRSRGSDLVIRQGQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVAAAVERALRS 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPSRG 304
GI ++ WG TLYH +DLPF L ++P + FR++V+G IR + L P
Sbjct: 124 LGIRLQVDWGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIR---DPLPIPSIPPLPS 180
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY-QAQPPKGNK 363
++PG +P+L LGLS A + A + GG T A RL+ + + + + K +
Sbjct: 181 GLDPGPLPTLASLGLSSPARDPR----ARFTYTGGSTAAHARLQTYFWDLDRLRIYKETR 236
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+G D + S ++S WLA+GC+SPR+++ E+K+ + +
Sbjct: 237 NGMLDP----DDSSRLSAWLALGCISPRTVYAEVKRYE------------QERVRNESTY 280
Query: 424 WLMFELLWRDFFR 436
WL+FELLWRD+FR
Sbjct: 281 WLVFELLWRDYFR 293
>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
Length = 521
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 178/318 (55%), Gaps = 27/318 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR DNE + A + ++P+YCFDPR Y G + KTGP+R FL+
Sbjct: 5 RTIICLLRNDLRFQDNELFHWAQRNAEYIVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-DAVYAHREVSHDEVKSEEKIEA 241
+S+ DLR L ++GS+LVVR GKPE V+ +L K +G+ AV H EV+ +E+ E+ ++
Sbjct: 65 DSIRDLRNTLLSKGSNLVVRQGKPEEVVADLIKQLGSVSAVAFHEEVTSEELNVEKGVKD 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKG 299
++V WGSTLYH DDLPF + +P Y FR+ V+ +R +QLK
Sbjct: 125 VCAQMKVKVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPVFPTPEQLKP 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LPS +E G IP+ DL ++ + P + GGE++ L RLK + + A
Sbjct: 185 LPS--GLEEGAIPTAEDLQQTEPLTDPRSAFPCS----GGESQVLARLKHYFWDTDAVAT 238
Query: 360 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K +PWLAMGC+SPR ++ ++K+ +A
Sbjct: 239 YKETRNG----LIGVDYSTKFAPWLAMGCISPRYIYHQIKQYEKERTA------------ 282
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FELLWRD+F+
Sbjct: 283 NQSTYWVIFELLWRDYFK 300
>gi|424841446|ref|ZP_18266071.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
gi|395319644|gb|EJF52565.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
Length = 460
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 167/313 (53%), Gaps = 25/313 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYG-KSSSGFDKTGPYRASFLIESV 185
I WFR DLR+HDNE L A S V PVY FD R +G K+ SGF KTGP R F+IE+V
Sbjct: 12 IAWFRLDLRLHDNEMLTEAIKASEEVYPVYVFDERTFGGKTESGFAKTGPRRCQFIIEAV 71
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL++ LQ G DL++R GK E L ELA+ + V+ +RE +++E + ++E +
Sbjct: 72 ADLKQQLQTLGIDLIIRRGKAEEELFELAQELKTGWVFCNRERTYEEELQQNRLEEKLWS 131
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA-LDQLKGLPSRG 304
G E+++F G LY+ DLPF + P + FR K VE I A L + + P
Sbjct: 132 IGQEIRFFRGKMLYYTQDLPFPIAHTPDIFTQFR---KEVEKLTPIRAPLPKPQAFPPWS 188
Query: 305 DVEP-GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
P GD+P L D G M KGGETE L+RL+ + E +
Sbjct: 189 HRLPLGDLPQLSDFGWE----MPPQDPRTVLQFKGGETEGLKRLQYYLWESDC---IASY 241
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ + GA++S K SPWLA GCLSP+ ++ E+K+ + + +
Sbjct: 242 KETRNGLLGADYSSKFSPWLAQGCLSPKQIYAEIKRYE------------KERTKNKSTY 289
Query: 424 WLMFELLWRDFFR 436
WL FELLWRDFFR
Sbjct: 290 WLYFELLWRDFFR 302
>gi|356507809|ref|XP_003522656.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Glycine max]
Length = 549
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 186/330 (56%), Gaps = 42/330 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+L A S +VLPVYC DPR + + GF KTG RA FL+E
Sbjct: 56 TAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLE 115
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DLRKNL RG +L+V+ GKPE +L LAK+ A VYA +E +E+ E + +
Sbjct: 116 CLADLRKNLMKRGLNLLVQHGKPEEILPSLAKSFQAHTVYAQKETCSEELNVERLVMRGL 175
Query: 244 KD--------EGIEV-------KYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEI 287
K GI V + WG+T+YHLDDLPF +P Y FR+ V+ I
Sbjct: 176 KQVVTSPEESSGITVSNNIPKLQLVWGTTMYHLDDLPFDATSLPDVYTQFRKLVETKCTI 235
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL 347
R I+ L P+ D G +PSL LGLS S ++++G K GGET AL R+
Sbjct: 236 RSCIKLPASLGPPPTVQDW--GCLPSLEQLGLS-SQSVNKGMK-----FVGGETAALSRV 287
Query: 348 -KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
+ F + + K ++G + G ++S K SPWLA G LSPR +++E+K+
Sbjct: 288 YEYFWKKDLLRVYKETRNG----MLGPDYSTKFSPWLASGSLSPRFIYEEVKRYE----- 338
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
ND + SS + W++FEL+WRD+FR
Sbjct: 339 ----NDRLANSS---TYWVLFELIWRDYFR 361
>gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 185/334 (55%), Gaps = 47/334 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
S+VWFR+DLRV DNE+L A S +VLPVYC DPR ++ GF KTG RA FLI
Sbjct: 97 VSVVWFRSDLRVLDNEALARAWAASGAVLPVYCVDPRVLAGATHRFGFPKTGALRAQFLI 156
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NLQ RG DL+VR GKPE +L E+AKA+ A VYAH+E +E+ E +
Sbjct: 157 ECLGDLKQNLQKRGLDLLVRHGKPEDILPEIAKAVSAHTVYAHKETCSEELLVEHLVRRG 216
Query: 243 MKDEGI------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
++ I +++ WG+T+YH+DDLPF + +P Y FR K VE + +
Sbjct: 217 LEKVIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVYTQFR---KAVESKSS 273
Query: 291 IEALDQ----LKGLPSRGDVEP---GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEA 343
+ + + L PS G E G IP+L LGL S S+ G GGE+ A
Sbjct: 274 VRSCSKLPPSLGPAPSSGLDEIGGWGSIPTLESLGL--SVTKSEKGM----RFVGGESAA 327
Query: 344 LQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT 402
L R+ + F Q + K ++G + G ++S K SPWLA G LSPR + +E+++
Sbjct: 328 LGRVHEYFWKNDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLSPRYVCEEVRRYEK 383
Query: 403 SISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
A ND + W++FEL+WRD+FR
Sbjct: 384 QRVA----ND--------STYWVLFELIWRDYFR 405
>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 185/338 (54%), Gaps = 46/338 (13%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG+ + +IVWFRNDLRV DNE+L A S +VLPVYC DPR +G + GF KTG
Sbjct: 85 NGSGV---AIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGAL 141
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FLIE ++DL++NL RG +L+++ GKPE +L LAK A VYAH+E +E+ E
Sbjct: 142 RAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVE 201
Query: 237 EKIEAAMKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE 280
+ ++ + +++ WGST+YH++DLPF +P Y FR+
Sbjct: 202 RLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRK 261
Query: 281 KVKG-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGG 339
V+ IR I L P+ D G +PS+ LGL + +S+G + GG
Sbjct: 262 SVESKCTIRICIRTPTLLGPPPNIEDW--GSVPSIDQLGLHEE-KVSRGMR-----FIGG 313
Query: 340 ETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
E AL R+ + F + + K ++G + GA++S K SPWLA G LSPR ++ E+K
Sbjct: 314 EAAALSRVNEYFWKKDLLKVYKATRNG----MLGADYSTKFSPWLASGSLSPRFIYQEVK 369
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ A ND + W++FEL+WRD+FR
Sbjct: 370 RYEKERQA----ND--------STYWVLFELIWRDYFR 395
>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 488
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 182/319 (57%), Gaps = 35/319 (10%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A ++WFR DLR+ D++ L A + ++P+YC DPR +G+++ GF KTGP+RA FL+ES
Sbjct: 2 AVLLWFRTDLRLLDHQPLTRACQQGSFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFLLES 61
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DLR+ L+ARGSDLV+R G+PE V+ LA+ G AVYAH EV +E ++ A++
Sbjct: 62 LADLRQQLRARGSDLVIRQGQPEQVIPALAREWGVKAVYAHEEVGTEEEAVARALQQALQ 121
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA-LDQLKGLPSR 303
GI + WG TLYH DLPF L ++P + FR++ VE + I A L P
Sbjct: 122 PLGIPLHLEWGHTLYHPADLPFALADLPEVFTRFRQQ---VEAKAAIRAPLPIPSLPPLP 178
Query: 304 GDVEPGDIPSLLDLGLS------QSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
++PG +P+L +LGLS ++ + GG AA + L RL+ +
Sbjct: 179 PGLDPGPLPTLAELGLSLPPPDPRARFVYAGGSTAAQARLQTYIWDLDRLRVY------- 231
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G D N S ++S WLA+GCLSPR+++ E+K+ E
Sbjct: 232 --KETRNGMLDP----NDSSRLSAWLALGCLSPRTVYAEVKRYE------------EERV 273
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ WL+FELLWRD+FR
Sbjct: 274 RNESTYWLVFELLWRDYFR 292
>gi|348503387|ref|XP_003439246.1| PREDICTED: cryptochrome DASH-like [Oreochromis niloticus]
Length = 521
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 176/318 (55%), Gaps = 27/318 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+YCFDP Y G + KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNELFHWAQRNAEHIVPLYCFDPTHYVGTYNYSLPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-DAVYAHREVSHDEVKSEEKIEA 241
E + DLR L +GS+LVVR GKPE V+ +L + +G+ +V H EV+ +E+ E++++
Sbjct: 65 EGIRDLRNTLINKGSNLVVRRGKPEEVVADLIRQLGSVSSVAFHEEVTSEELNVEKRVKD 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
++V WGSTLYH DDLPF + +P Y FR+ V+ +R ++L
Sbjct: 125 VCAQMKVKVHTCWGSTLYHRDDLPFPHMSRLPDVYTQFRKAVESEGRVRPVFSTPEKLNP 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LP +E G IP+ DL ++ + P GGE++AL RLK + + A
Sbjct: 185 LPP--GLEEGAIPTAEDLQQTEPVTDPRSAFPCG----GGESQALARLKHYFWDTDAVAT 238
Query: 360 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K SPWLAMGC+SPR ++ ++K+ +A
Sbjct: 239 YKETRNG----LIGVDYSTKFSPWLAMGCISPRYIYHQIKQYEKERTA------------ 282
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FELLWRD+FR
Sbjct: 283 NQSTYWVIFELLWRDYFR 300
>gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 180/316 (56%), Gaps = 27/316 (8%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 42 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 101
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 102 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 161
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 162 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 221
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
PS D GD+P+L LG+ + +++G + GGE+ + R+ F ++ K
Sbjct: 222 PSVDDW--GDVPTLEKLGV-EPQEVTRGMR-----FVGGESAGVGRV--FEYFWKKDLLK 271
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 272 VYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS----------- 319
Query: 421 GSNWLMFELLWRDFFR 436
+ W++FEL+WRD+FR
Sbjct: 320 -TYWVLFELIWRDYFR 334
>gi|97047673|sp|Q84KJ5.2|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
Length = 569
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 180/316 (56%), Gaps = 27/316 (8%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 85 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 144
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 145 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 204
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 205 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 264
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
PS D GD+P+L LG+ + +++G + GGE+ + R+ F ++ K
Sbjct: 265 PSVDDW--GDVPTLEKLGV-EPQEVTRGMR-----FVGGESAGVGRV--FEYFWKKDLLK 314
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 315 VYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS----------- 362
Query: 421 GSNWLMFELLWRDFFR 436
+ W++FEL+WRD+FR
Sbjct: 363 -TYWVLFELIWRDYFR 377
>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]
Length = 525
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 180/316 (56%), Gaps = 27/316 (8%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 41 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 100
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 101 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 160
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 161 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 220
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
PS D GD+P+L LG+ + +++G + GGE+ + R+ F ++ K
Sbjct: 221 PSVDDW--GDVPTLEKLGV-EPQEVTRGMR-----FVGGESAGVGRV--FEYFWKKDLLK 270
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 271 VYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS----------- 318
Query: 421 GSNWLMFELLWRDFFR 436
+ W++FEL+WRD+FR
Sbjct: 319 -TYWVLFELIWRDYFR 333
>gi|22327046|ref|NP_568461.2| cryptochrome DASH [Arabidopsis thaliana]
gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana]
Length = 526
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 180/316 (56%), Gaps = 27/316 (8%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 42 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 101
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 102 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 161
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 162 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 221
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
PS D GD+P+L LG+ + +++G + GGE+ + R+ F ++ K
Sbjct: 222 PSVDDW--GDVPTLEKLGV-EPQEVTRGMR-----FVGGESAGVGRV--FEYFWKKDLLK 271
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 272 VYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS----------- 319
Query: 421 GSNWLMFELLWRDFFR 436
+ W++FEL+WRD+FR
Sbjct: 320 -TYWVLFELIWRDYFR 334
>gi|225429814|ref|XP_002280771.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 549
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 185/338 (54%), Gaps = 46/338 (13%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG+ + +IVWFRNDLRV DNE+L A S +VLPVYC DPR +G + GF KTG
Sbjct: 48 NGSGV---AIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGAL 104
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FLIE ++DL++NL RG +L+++ GKPE +L LAK A VYAH+E +E+ E
Sbjct: 105 RAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVE 164
Query: 237 EKIEAAMKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE 280
+ ++ + +++ WGST+YH++DLPF +P Y FR+
Sbjct: 165 RLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRK 224
Query: 281 KVKG-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGG 339
V+ IR I L P+ D G +PS+ LGL + +S+G + GG
Sbjct: 225 SVESKCTIRICIRTPTLLGPPPNIEDW--GSVPSIDQLGLHEE-KVSRGMR-----FIGG 276
Query: 340 ETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
E AL R+ + F + + K ++G + GA++S K SPWLA G LSPR ++ E+K
Sbjct: 277 EAAALSRVNEYFWKKDLLKVYKATRNG----MLGADYSTKFSPWLASGSLSPRFIYQEVK 332
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ A ND + W++FEL+WRD+FR
Sbjct: 333 RYEKERQA----ND--------STYWVLFELIWRDYFR 358
>gi|410909117|ref|XP_003968037.1| PREDICTED: cryptochrome DASH-like [Takifugu rubripes]
Length = 521
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 175/318 (55%), Gaps = 27/318 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+ DNE + A + ++P+YCFDPR Y G KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLFDNELFHWAQRNADHIVPLYCFDPRHYMGTYHYNLPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
ES+ DLR L +GS+L+VR GKPE V+ L K +G+ + A H EV+ +E+ E++++
Sbjct: 65 ESIKDLRNTLLNKGSNLIVRRGKPEEVVASLIKQLGSVSTVAFHEEVTSEELDVEKRVKD 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKG 299
+ V WGSTLYH DDLPF + +P Y FR+ V+ +R + LK
Sbjct: 125 VCAQMKVNVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVESQCRVRPVFPPPEHLKP 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LP +E G I + DL + A + P + GGE++AL RLK + + A
Sbjct: 185 LPQ--GLEEGTILTAEDLEQKEPVADPRSAFPCS----GGESQALARLKHYFWDTDAVAV 238
Query: 360 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K SPWLA+GC+SPR ++ ++K+ + +A
Sbjct: 239 YKETRNG----LIGVDYSTKFSPWLALGCISPRYIYHQIKQYESERTA------------ 282
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FELLWRD+FR
Sbjct: 283 NQSTYWVIFELLWRDYFR 300
>gi|379729344|ref|YP_005321540.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
gi|378574955|gb|AFC23956.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
Length = 466
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 166/319 (52%), Gaps = 37/319 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYG-KSSSGFDKTGPYRASFLIESV 185
I WFR DLR+HDNE L A V PVY FD R +G K+ SGF KTGP R F+IE+V
Sbjct: 14 IAWFRLDLRLHDNEMLTEAIKAGEEVYPVYVFDERTFGGKTESGFAKTGPRRCQFIIEAV 73
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL++ LQA G DL++R GK E + +LA+ + V+ +RE +++E + ++E +
Sbjct: 74 ADLKQQLQALGIDLLIRRGKAEEEVFKLAQELKTGWVFCNREKTYEEELQQNRLEEKLWS 133
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG-LPSRG 304
G E+++F G LY+ DLPF + P + F RK +E L ++ LP
Sbjct: 134 IGQEIRFFRGKMLYYTQDLPFPIAHTPDIFTQF---------RKEVEKLTPVRAPLPKPK 184
Query: 305 DVEP-------GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
P GD+P L D G M KGGETE L+RL + E
Sbjct: 185 AFNPWSHRLPLGDLPQLSDFGWE----MPPQDDRTVLQFKGGETEGLKRLHYYLWESDC- 239
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
+ + + GA++S K SPWLA GCLSP+ ++DE+K+ + +
Sbjct: 240 --IASYKETRNGLLGADYSSKFSPWLAQGCLSPKQIYDEIKRYE------------KERT 285
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ WL FELLWRDFFR
Sbjct: 286 KNKSTYWLYFELLWRDFFR 304
>gi|390338240|ref|XP_783613.3| PREDICTED: cryptochrome DASH-like [Strongylocentrotus purpuratus]
Length = 417
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 169/322 (52%), Gaps = 26/322 (8%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRA 178
A + I RNDLR DNE L A+ + +V+P+YCFDPR Y G GF KTGP+R
Sbjct: 2 AGRMKIVICLLRNDLRYRDNEVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRL 61
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG---ADAVYAHREVSHDEVKS 235
FL+ESV DLR LQ+ GS LVVR G PE V+ +L + G AV E + +E+
Sbjct: 62 KFLLESVRDLRTTLQSVGSGLVVRSGNPEDVVPQLIQQFGEGEVAAVALQEEATREELDV 121
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEAL 294
E + + G++VK FWGSTLYH +D+PF +P Y FR+KV+ +R I
Sbjct: 122 EAGLHQSCSKLGVQVKKFWGSTLYHREDVPFSPQGVPNVYTEFRKKVENRSHVRPPINMP 181
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
LKGLP VE GDIP GL + S+ P +GGET L R++ + +
Sbjct: 182 KPLKGLPQ--GVEEGDIPVFSSFGLKDPGSDSRTAFP----FQGGETTGLARIEDY---F 232
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ + G+ +S K + WLA GC+SPR + E+K+ +
Sbjct: 233 WKSDCIAKYKETRNGLIGSEYSTKFAAWLAHGCVSPRQIHAEVKRYE------------K 280
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
+ + W++FEL+WRD+F+
Sbjct: 281 ERTENQSTYWVIFELIWRDYFK 302
>gi|357123300|ref|XP_003563349.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Brachypodium distachyon]
Length = 587
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 184/338 (54%), Gaps = 51/338 (15%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
++VWFRNDLRV DNE+L A + +VLPVYC DPR + + GF KTG RA FLI
Sbjct: 88 VAVVWFRNDLRVLDNEALVRAWAAAEAVLPVYCVDPRIFAGVTHRFGFPKTGALRAQFLI 147
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NLQ RG +L+VR GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 148 ECLEDLKQNLQKRGLNLLVRHGKPEDILPAIAKAVRAHTVYAHQETCSEEILVERLVHRG 207
Query: 243 MKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE 286
++ I +++ WG+T+YH+DDL F + +P Y FR K VE
Sbjct: 208 LEQVVIPQGPGGASNQNKPLNPKLQLIWGTTMYHVDDLLFPVSNLPDVYTQFR---KAVE 264
Query: 287 IRKTIEALDQLKGL----PSRGDVEP---GDIPSLLDLGLSQSAAMSQGGKPAANSMKGG 339
+ +++ +L L PS G E G IP+L LGLS + A GG
Sbjct: 265 SKSSVQNCCKLPPLLGPAPSSGLDELGGWGSIPTLESLGLSVTKA------EKGMHFLGG 318
Query: 340 ETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
E+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR + +E+K
Sbjct: 319 ESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLSPRYICEEVK 374
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ A ND + W++FEL+WRD+FR
Sbjct: 375 RYEKQRVA----ND--------STYWVLFELIWRDYFR 400
>gi|110825715|sp|Q38JU2.2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum]
Length = 577
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 184/330 (55%), Gaps = 41/330 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+L A S ++LPVYC DPR +G + G KTG RA F+IE
Sbjct: 79 VAIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIE 138
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL++NL RG DL+++ GKPE ++ LAKA A VYAH+E +EVK E+ + +
Sbjct: 139 CLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNL 198
Query: 244 K------------DEG----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVE 286
+ D G +++ WGST+YH+DDLPF +P Y FR+ V+ +
Sbjct: 199 QKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSK 258
Query: 287 IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQR 346
+R + P GD G +P + +LGL Q +S+G + GGE+ AL R
Sbjct: 259 VRNCTKLPTSFGPPPEVGDW--GHVPQVSELGLQQE-KVSKG-----MNFVGGESAALGR 310
Query: 347 LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
+ + ++ K K+ + + GA++S K SPWLA G LSPR +++E+K+
Sbjct: 311 VHDYF--WKKDLLKVYKE-TRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYE----- 362
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ S + W++FEL+WRD+FR
Sbjct: 363 -------KERLSNDSTYWVLFELIWRDYFR 385
>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
Length = 577
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 182/333 (54%), Gaps = 43/333 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
++VWFRNDLRV DNE+L A + S +VLPVYC DPR + S+ GF KTG RA FLI
Sbjct: 79 VAVVWFRNDLRVLDNEALLRAWSASEAVLPVYCVDPRVFAGSTHYFGFPKTGALRAQFLI 138
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++ L+ +G DL+VR GKPE +L +AKA+ A +YAH+E +E+ E +
Sbjct: 139 ECLGDLKQILRKKGLDLLVRHGKPEEILPSIAKAVSAHTIYAHKETCSEELLVERLVSKG 198
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEI 287
++ I ++ WG+T+YH+DDLPF + +P Y FR+ V+ +
Sbjct: 199 LEQVQIAQGGASVPKKPLNPRLQLIWGATMYHIDDLPFPVSNLPDVYTQFRKAVESKSSV 258
Query: 288 RKTIEALDQLKGLPSRGDVEPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
R + L LPS E G IP+L LGL S S+ G GGE AL
Sbjct: 259 RNCTKLPPSLGPLPSSSIDEIGGWGAIPTLESLGL--SVTKSEKGM----HFIGGENAAL 312
Query: 345 QRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 403
R+ + F + Q + K ++G + G ++S K SPWLA G LSPR + +E+K+
Sbjct: 313 GRVHEYFWKKDQLKDYKVTRNG----MLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQ 368
Query: 404 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
A ND + W++FEL+WRD+FR
Sbjct: 369 RVA----ND--------STYWVLFELIWRDYFR 389
>gi|440712553|ref|ZP_20893169.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
gi|436442708|gb|ELP35819.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
Length = 488
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 174/314 (55%), Gaps = 26/314 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIES+
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
+GI +G TL H D+LPF++ + P + FR+++ K E R +E +++G LP
Sbjct: 123 QGIATHVAYGDTLIHPDELPFEISDTPELFTDFRKEIEKQCEARSPLEEPIRIQGALPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA-EYQAQPPKGN 362
+V GDIP+L LGLS + N GG+ A QR++++ E + + K
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR----CLNQFTGGQNAAQQRMEEYIWNEDRLRVYKET 236
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + N S K SPWLA GCLSPR + D +++ E +
Sbjct: 237 RNG----MLHQNDSSKFSPWLAQGCLSPRMIADHVRRYE------------EERVENKST 280
Query: 423 NWLMFELLWRDFFR 436
W++FELLWRD+FR
Sbjct: 281 YWMIFELLWRDYFR 294
>gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1]
gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1]
Length = 526
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 26/314 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIE++
Sbjct: 42 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENL 100
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 101 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQ 160
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
GI +G TL H D+LPF++ + P + FR+++ K E R +E ++ G LP
Sbjct: 161 HGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIRIHGTLPE- 219
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA-EYQAQPPKGN 362
+V GDIP+L LGLS + N GG+ A QR++++ E + + K
Sbjct: 220 -EVNAGDIPTLESLGLSTPPLDDR----CLNQFTGGQNAAQQRMEEYIWNEDRLRVYKET 274
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + N S K SPWLA GCLSPR + D +++ E +
Sbjct: 275 RNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRRYE------------EERVKNKST 318
Query: 423 NWLMFELLWRDFFR 436
W++FELLWRD+FR
Sbjct: 319 YWMIFELLWRDYFR 332
>gi|97047983|sp|Q7UJB1.2|CRYD_RHOBA RecName: Full=Cryptochrome DASH
Length = 488
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 26/314 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIE++
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
GI +G TL H D+LPF++ + P + FR+++ K E R +E ++ G LP
Sbjct: 123 HGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIRIHGTLPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA-EYQAQPPKGN 362
+V GDIP+L LGLS + N GG+ A QR++++ E + + K
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR----CLNQFTGGQNAAQQRMEEYIWNEDRLRVYKET 236
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + N S K SPWLA GCLSPR + D +++ E +
Sbjct: 237 RNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRRYE------------EERVKNKST 280
Query: 423 NWLMFELLWRDFFR 436
W++FELLWRD+FR
Sbjct: 281 YWMIFELLWRDYFR 294
>gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1]
Length = 525
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 178/325 (54%), Gaps = 36/325 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYG-------KSSSGFDKTGP 175
R +VWFRNDLRVHDNE L A S + V+PVYCFD R Y + F K G
Sbjct: 8 RPVVVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCGQFPKCGR 67
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
RA FLIESV DLR LQ GS LVVR G PE + +A +GA V+AH+EV +EV +
Sbjct: 68 PRARFLIESVDDLRTRLQELGSGLVVRTGLPEEEVARVAAQVGATQVFAHQEVCSEEVAA 127
Query: 236 EEKIEAAMKDEGIEVKYFWGS-TLYHLDDLPF--KLGEMPTNYGGFREKVKG-VEIRKTI 291
E +++ ++ + + WG+ TL HLDDL F + +P+ + FR++V+ + +R +
Sbjct: 128 EHRLKRQLE---VPLSLHWGAVTLCHLDDLDFGPRCKHLPSVFTQFRKRVEADMHVRPVV 184
Query: 292 EALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
A +L LPS D+E G IP++ DL Q + P KGGET A RL+ +
Sbjct: 185 AAPARLAPLPS--DLELGSIPTVEDLCPGQHEPDERAVLP----FKGGETAARARLQYYL 238
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
+++ KD + + G ++S K SPWLA G L+ R ++ E+K+
Sbjct: 239 --WESNLLASYKD-TRNGLVGGDYSSKFSPWLAHGNLTARWIYHEVKRYE---------- 285
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
+ + + WL+FELLWRD+FR
Sbjct: 286 --QERTENTSTYWLIFELLWRDYFR 308
>gi|421610747|ref|ZP_16051913.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
gi|408498531|gb|EKK03024.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
Length = 488
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 173/314 (55%), Gaps = 26/314 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIES+
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VR G+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRAGRPETVLQHLLPSLAVDAVHFHHEPGTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
+GI +G TL H D+LPF++ + P + FR+++ K E R +E +++G LP
Sbjct: 123 QGIATHVAYGDTLIHPDELPFEISDTPELFTDFRKEIEKQCEARSPLEEPIRIQGALPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA-EYQAQPPKGN 362
+V GDIP+L LGLS + N GG+ A QR++++ E + + K
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR----CLNRFTGGQNAAQQRMEEYIWNEDRLRVYKET 236
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + N S K SPWLA GCLSPR + D +++ + +
Sbjct: 237 RNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRRYE------------KERVENKST 280
Query: 423 NWLMFELLWRDFFR 436
W++FELLWRD+FR
Sbjct: 281 YWMIFELLWRDYFR 294
>gi|75322263|sp|Q651U1.1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
Flags: Precursor
gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group]
gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group]
Length = 582
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 181/344 (52%), Gaps = 65/344 (18%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +VLPVYC DPR S+ GF KTG RA FLI
Sbjct: 85 VAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 144
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 145 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKG 204
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 205 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 261
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAA 333
++ LD++ G G +P+L LGLS + A
Sbjct: 262 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKA------EKG 307
Query: 334 NSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR
Sbjct: 308 MHFVGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLSPRY 363
Query: 393 MFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ +E+K+ A ND + W++FEL+WRD+FR
Sbjct: 364 ICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFR 395
>gi|417302466|ref|ZP_12089566.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
Length = 488
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 26/314 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VW+RNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIES+
Sbjct: 4 ALVWYRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
GI +G TL H D+LPF++ + P + FR+++ K E R +E +++G LP
Sbjct: 123 HGIATHVAYGDTLIHPDELPFEIADTPGLFTDFRKEIEKQCEARSPLEEPIRIQGALPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA-EYQAQPPKGN 362
+V GDIP+L LGLS + N GG+ A QR++++ E + + K
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR----CLNQFTGGQNAAQQRMEEYIWNEDRLRVYKET 236
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + N S K SPWLA GCLSPR + D ++ E +
Sbjct: 237 RNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRCYE------------EERVENKST 280
Query: 423 NWLMFELLWRDFFR 436
W++FELLWRD+FR
Sbjct: 281 YWMIFELLWRDYFR 294
>gi|413955020|gb|AFW87669.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 578
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 179/333 (53%), Gaps = 43/333 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
++VWFRNDLRV DNE+L A S +VLPVYC DPR + S+ GF K G RA FLI
Sbjct: 80 VAVVWFRNDLRVIDNEALLRAWAASEAVLPVYCVDPRVFAGSTHYFGFPKKGALRAQFLI 139
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL+++L+ +G DL+VR GKPE +L +AKA+ A +YAH+E +E+ E +
Sbjct: 140 ECLGDLKQSLRKKGLDLLVRHGKPEEILPSIAKAVSAHTIYAHKETCSEELLVERLVSKG 199
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I ++ WG+T+YH+DDLPF + +P Y FR+ V+
Sbjct: 200 LEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRKAVESKCSV 259
Query: 289 KTIEALDQLKGLPSRGDVEP----GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
+ L G P ++ G +P+L LG S S+ G GGE+ AL
Sbjct: 260 RNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLG--PSVTKSEKGM----HFIGGESAAL 313
Query: 345 QRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 403
R+ + F + Q + K ++G + G ++S K SPWLA G LSPR + +E+K+
Sbjct: 314 GRVHEYFWKKDQLKDYKVTRNG----MLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQ 369
Query: 404 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
A ND + W++FEL+WRD+FR
Sbjct: 370 RVA----ND--------STYWVLFELIWRDYFR 390
>gi|449669082|ref|XP_002166544.2| PREDICTED: cryptochrome DASH-like [Hydra magnipapillata]
Length = 526
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 182/324 (56%), Gaps = 22/324 (6%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYR 177
G + R+ I W RNDLR+HDNE LN A + VLP+YCFDP Y + GF KTG +R
Sbjct: 3 GFSSRKTIIYWIRNDLRLHDNECLNFACRDGSHVLPLYCFDPDHYKLTHHFGFLKTGIHR 62
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKP----ETVLVELAKAIGADAVYAHREVSHDEV 233
A ++++VS LR +LQ +GS+LV+ +P E +++E + ++ +E++ +E
Sbjct: 63 AKLILDAVSGLRNSLQKKGSNLVISKHRPKEAIEKLILECEQTAPVTSIVFQKEITKEET 122
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
E + +GI+V FWGSTLYH++D+PF++ ++P Y FR+ V+ +RK
Sbjct: 123 DVEASVFKVCDSKGIQVLSFWGSTLYHIEDIPFQINQIPNTYTLFRKGVEKCPVRKLNPI 182
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
D++ LP+ + G++P L +LG ++ + + G E +A++RL ++
Sbjct: 183 PDKISSLPNLKNFPLGEVPLLNELGFDKNEY--EIDVRSVFPFNGSEVDAVKRLNEYLWG 240
Query: 354 YQA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
A K ++G + G ++S K SPWLA+G LSPR ++ ++K K +
Sbjct: 241 NSAILTYKETRNG----LLGKDYSTKFSPWLALGSLSPRMIYHKIK----DFEEQKKIKE 292
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+S + W++FEL+WRD+F+
Sbjct: 293 NDS------TYWVVFELIWRDYFK 310
>gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group]
gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group]
Length = 547
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 181/344 (52%), Gaps = 65/344 (18%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +VLPVYC DPR S+ GF KTG RA FLI
Sbjct: 50 VAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 109
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 110 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKG 169
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 170 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 226
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAA 333
++ LD++ G G +P+L LGLS + A
Sbjct: 227 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKA------EKG 272
Query: 334 NSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR
Sbjct: 273 MHFVGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLSPRY 328
Query: 393 MFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ +E+K+ A ND + W++FEL+WRD+FR
Sbjct: 329 ICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFR 360
>gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group]
Length = 547
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 181/344 (52%), Gaps = 65/344 (18%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +VLPVYC DPR S+ GF KTG RA FLI
Sbjct: 50 VAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 109
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 110 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHQETCSEELLVEHLVRKG 169
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 170 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 226
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAA 333
++ LD++ G G +P+L LGLS + A
Sbjct: 227 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKA------EKG 272
Query: 334 NSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR
Sbjct: 273 MHFVGGESAALGRVHEYFWKKDQLKVYKKTRNG----MLGPDYSTKFSPWLASGSLSPRY 328
Query: 393 MFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ +E+K+ A ND + W++FEL+WRD+FR
Sbjct: 329 ICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFR 360
>gi|381186840|ref|ZP_09894408.1| cryptochrome [Flavobacterium frigoris PS1]
gi|379651146|gb|EIA09713.1| cryptochrome [Flavobacterium frigoris PS1]
Length = 429
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 184/316 (58%), Gaps = 28/316 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +IVWF+ DLR++DNE+L A +S +LP+YCFD + + GF KTG YRA FL+E
Sbjct: 2 KTAIVWFKTDLRLYDNETLIKAIAQSEEILPIYCFDDSHFETTQYGFKKTGSYRAQFLLE 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ +L NL+ GS L++ GKPE + ++ V+A REV+ +E ++E+ ++ +
Sbjct: 62 SLKNLDANLRKLGSGLLIVKGKPEVEIPKIVAEYKVHKVFAEREVAFEEKRTEKLVQTEL 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
E++ F STLYH +DLPF ++P + FR+K+ + +R + L
Sbjct: 122 FKLRCELETFSTSTLYHAEDLPFAKKDIPDIFTVFRKKIEQETSVRSVFSS-----PLTI 176
Query: 303 RGDVEPG-DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPK 360
+ P ++P+L LGL S S+ AA + KGGET+A +RL + E ++ K
Sbjct: 177 ASPIIPKLNLPTLKKLGLELSKIDSR----AAINFKGGETQAKKRLNHYFFETKSLSSYK 232
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G ++S K S WLA+GC+SPR+++ E+K+ + ++G++ +
Sbjct: 233 ETRNG----MVGEDYSSKFSAWLALGCISPRAIYFEIKRY-----------ENQNGANDS 277
Query: 421 GSNWLMFELLWRDFFR 436
+ WL+FELLWRDFFR
Sbjct: 278 -TYWLVFELLWRDFFR 292
>gi|226508658|ref|NP_001146707.1| uncharacterized protein LOC100280309 [Zea mays]
gi|219888435|gb|ACL54592.1| unknown [Zea mays]
Length = 550
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 179/333 (53%), Gaps = 43/333 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
++VWFRNDLRV DNE+L A S +VLPVYC DPR + S+ GF K G RA FLI
Sbjct: 52 VAVVWFRNDLRVIDNEALLRAWAASEAVLPVYCVDPRVFAGSTHYFGFPKKGALRAQFLI 111
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL+++L+ +G DL+VR GKPE +L +AKA+ A +YAH+E +E+ E +
Sbjct: 112 ECLGDLKQSLRKKGLDLLVRHGKPEEILPSIAKAVSAHTIYAHKETCSEELLVERLVSKG 171
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I ++ WG+T+YH+DDLPF + +P Y FR+ V+
Sbjct: 172 LEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRKAVESKCSV 231
Query: 289 KTIEALDQLKGLPSRGDVEP----GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
+ L G P ++ G +P+L LG S S+ G GGE+ AL
Sbjct: 232 RNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLG--PSVTKSEKGM----HFIGGESAAL 285
Query: 345 QRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 403
R+ + F + Q + K ++G + G ++S K SPWLA G LSPR + +E+K+
Sbjct: 286 GRVHEYFWKKDQLKDYKVTRNG----MLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQ 341
Query: 404 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
A ND + W++FEL+WRD+FR
Sbjct: 342 RVA----ND--------STYWVLFELIWRDYFR 362
>gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group]
Length = 547
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 180/344 (52%), Gaps = 65/344 (18%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +V PVYC DPR S+ GF KTG RA FLI
Sbjct: 50 VAIVWFRNDLRVLDNEAVVRAWAASDAVFPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 109
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 110 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKG 169
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 170 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 226
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAA 333
++ LD++ G G +P+L LGLS + A
Sbjct: 227 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKA------EKG 272
Query: 334 NSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR
Sbjct: 273 MHFVGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLSPRY 328
Query: 393 MFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ +E+K+ A ND + W++FEL+WRD+FR
Sbjct: 329 ICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFR 360
>gi|384248698|gb|EIE22181.1| cryptochrome [Coccomyxa subellipsoidea C-169]
Length = 566
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 184/328 (56%), Gaps = 24/328 (7%)
Query: 127 IVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++WFRNDLR+ DN ++ A ++ V+P+YCFDPR Y + G KTG + ASFL
Sbjct: 7 VLWFRNDLRLTDNAIVHQAAQLIQKKQASEVVPLYCFDPRQYIATPWGNPKTGAHHASFL 66
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++SV DL++ L+ GSDLV+ +GKPE + L + V A EV+ +E+ +E + A
Sbjct: 67 LQSVLDLKQRLRDIGSDLVIHMGKPEEAIQGLCREGQQLTVLAQMEVTKEELDVDEGVRA 126
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFK--LGEMPTNYGGFREKVKG-VEIRKTIEALDQLK 298
A+ G ++ WG+TLYH DDLPF+ + E+P + F++KV+ E+R + A +
Sbjct: 127 ALGSRG-RLQLLWGNTLYHKDDLPFRSDMSELPDVFTPFKQKVEARCEVRAPLPAPKE-G 184
Query: 299 GLPSRGDVEPG----------DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLK 348
LP D++P D+ +++ G + A++ + AA + +GGET AL+RLK
Sbjct: 185 ALPLAADLDPARLSRKPSCVEDLNAVVPEGAPRLASLPRHPN-AAIAFEGGETAALRRLK 243
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ + + + + GA++S K SPWLA GC+SP ++F E + T +A
Sbjct: 244 HYLWDTGCISTYFD---TRNGMLGADYSTKFSPWLARGCISPSTIFHEARAFLTLAAAEI 300
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFFR 436
E S + W++FEL WRDFFR
Sbjct: 301 VKRYEEQHGSNKSTYWVIFELTWRDFFR 328
>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
Length = 584
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 177/338 (52%), Gaps = 67/338 (19%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG+ + +IVWFRNDLRV DNE+L A S +VLPVYC DPR +G + GF KTG
Sbjct: 104 NGSGV---AIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGAL 160
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FLIE ++DL++NL RG +L+++ GKPE +L LAK A VYAH+E +E+ E
Sbjct: 161 RAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVE 220
Query: 237 EKIEAAMKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE 280
+ ++ + +++ WGST+YH++DLPF +P Y FR
Sbjct: 221 RLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFR- 279
Query: 281 KVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGE 340
K VE + TI + R G P++ D G ++S+G + GGE
Sbjct: 280 --KSVESKCTIR-------ICIRTPTLLGPPPNIEDWG-----SVSRGMR-----FIGGE 320
Query: 341 TEALQR--LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
AL R LK + A + + GA++S K SPWLA G LSPR ++ E+K
Sbjct: 321 AAALSRDLLKVYKA-------------TRNGMLGADYSTKFSPWLASGSLSPRFIYQEVK 367
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ A ND + W++FEL+WRD+FR
Sbjct: 368 RYEKERQA----ND--------STYWVLFELIWRDYFR 393
>gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa]
gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 177/347 (51%), Gaps = 54/347 (15%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
A+IVWFRNDLRV DNE L A S SVLPVYC DPR + S+ GF KTG R F++
Sbjct: 36 AAIVWFRNDLRVLDNEVLFKAWVNSESVLPVYCVDPRLFQASTCYFGFPKTGGLRGQFIV 95
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL+KNL RG +L++R GKPE ++ LAK + VYA +E +EV E+ + A
Sbjct: 96 ECLVDLKKNLMKRGLNLLIRHGKPEEIIPALAKDFASHTVYAQKETCSEEVNVEKLVSKA 155
Query: 243 MKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE 286
++ + ++ WG T+YHLDDLPF +P Y FR K VE
Sbjct: 156 LRRVHLPHSTGRSTSQGSANSPTLQLVWGGTMYHLDDLPFSTNSIPDVYTQFR---KSVE 212
Query: 287 IRKTIEALDQLK-GLPSRGDVEP-GDIPSLLDLGLSQSAAMSQGGKPAANSMK--GGETE 342
R +I + ++ L VE G +PS+ LGL A + M+ GGET
Sbjct: 213 ARCSIRSCAKISMSLGPAPRVEDWGCVPSIEQLGLQPQEAGFMFYLHVSKGMRFLGGETA 272
Query: 343 ALQRLKKFAAEYQAQPPKGN-------------KDGNHDSIYGANFSCKISPWLAMGCLS 389
AL R+ EY + GN + + G ++S K SPWLA G LS
Sbjct: 273 ALSRV----YEYFWKKASGNCFLLSLCLDFLKIYKETRNGMLGPDYSTKFSPWLASGSLS 328
Query: 390 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
PR +++E+K+ A ND + W++FEL+WRD+FR
Sbjct: 329 PRFIYEEVKRYEKGRLA----ND--------STYWVLFELIWRDYFR 363
>gi|449437082|ref|XP_004136321.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 181/333 (54%), Gaps = 45/333 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+LN A S +VLPVYC DPR +G + GF KTG RA F++E
Sbjct: 51 VAIVWFRNDLRVLDNEALNKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVE 110
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL++NL RG +L+++ GKPE +L LAKA+GA V+A E +E+ E+ + +
Sbjct: 111 CLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALGAHTVFAQMETCSEELYVEKMVSKGL 170
Query: 244 KDEGIE------------------VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG- 284
K + + WG+T+YH+DDLPF +P Y FR+ V+
Sbjct: 171 KTVVLSPTSEKSASAKSSAARSPTFQLVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAK 230
Query: 285 VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
+IR I L PS D G +PSL LGL Q ++ +G + GGE+ AL
Sbjct: 231 CKIRDCIRLPALLGPAPSIDDW--GSVPSLDKLGL-QPPSVVKGMR-----FIGGESAAL 282
Query: 345 QRL-KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 403
R+ + F + + K ++G + G ++S K SPWLA G +SPR + +E+++
Sbjct: 283 SRIYEYFWKKDLLRIYKETRNG----MLGPDYSTKFSPWLASGSISPRLIHEEVRRYERE 338
Query: 404 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
A + W++FEL+WRD+FR
Sbjct: 339 REA------------NQSTYWVLFELIWRDYFR 359
>gi|449505505|ref|XP_004162492.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 181/333 (54%), Gaps = 45/333 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+LN A S +VLPVYC DPR +G + GF KTG RA F++E
Sbjct: 51 VAIVWFRNDLRVLDNEALNKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVE 110
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL++NL RG +L+++ GKPE +L LAKA+GA V+A E +E+ E+ + +
Sbjct: 111 CLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALGAHTVFAQMETCSEELYVEKMVSKGL 170
Query: 244 KDEGIE------------------VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG- 284
K + + WG+T+YH+DDLPF +P Y FR+ V+
Sbjct: 171 KTVVLSPTSEKSASAKSSAARSPTFQLVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAK 230
Query: 285 VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
+IR I L PS D G +PSL LGL Q ++ +G + GGE+ AL
Sbjct: 231 CKIRDCIRLPALLGPAPSIDDW--GSVPSLDKLGL-QPPSVVKGMR-----FIGGESAAL 282
Query: 345 QRL-KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 403
R+ + F + + K ++G + G ++S K SPWLA G +SPR + +E+++
Sbjct: 283 SRIYEYFWKKDLLRIYKETRNG----MLGPDYSTKFSPWLASGSISPRLIHEEVRRYERE 338
Query: 404 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
A + W++FEL+WRD+FR
Sbjct: 339 REA------------NQSTYWVLFELIWRDYFR 359
>gi|448611990|ref|ZP_21662420.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
gi|445742751|gb|ELZ94245.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
Length = 486
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 180/318 (56%), Gaps = 27/318 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+VWFR DLR+HDNE+L A + V+PVYCFDP DYG G F+KTG +RA
Sbjct: 6 SLVWFRRDLRLHDNEALVEAC-AADRVVPVYCFDPGDYGTRPFGGDDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ESV+DLR +L+ R SDL+VRVG+PE+V+ ++A A+ A +V H + +E++ E +
Sbjct: 65 FRLESVADLRSSLRDRDSDLLVRVGRPESVIPDVAAAVDAASVTMHTWPTAEEMQVEAAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLK 298
+ +D I+ + FWG TL HLDDLP ++P Y FR V + +R+ + + ++
Sbjct: 125 KREHRDADIDPRRFWGHTLTHLDDLPMAYDDVPDTYTTFRNAVERDATVREPLH-IPEIP 183
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P+ +PG IPS+ D L ++ + GGET AL R++ + ++
Sbjct: 184 AFPADA-PDPGSIPSIAD--LDETLTTPRFDDRGVLRFDGGETAALDRVESYI--WEGDH 238
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+ K+ + + GA++S K SPWL GCLSPR + E+++ + S
Sbjct: 239 LREYKE-TRNRMLGADYSSKFSPWLNEGCLSPRYVQSEVERYE------------DVRVS 285
Query: 419 GAGSNWLMFELLWRDFFR 436
+ WL FEL WRDFF+
Sbjct: 286 NDSTYWLTFELRWRDFFQ 303
>gi|448546392|ref|ZP_21626556.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548379|ref|ZP_21627646.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557573|ref|ZP_21632762.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702845|gb|ELZ54785.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445714130|gb|ELZ65897.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714474|gb|ELZ66236.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 503
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 179/338 (52%), Gaps = 44/338 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+HDN + A V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLHDNAAFAAACGAD-RVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR G+PE+VL ELA A AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVREGRPESVLPELAAATDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEAL--DQ 296
E ++ +G+E++ WG TL HLDDLP L ++P Y FR+ V+ E T +A D+
Sbjct: 125 ETELRGDGVELRRVWGHTLTHLDDLPMVLSDLPDTYTTFRKAVESAAEDAGTGDAAVGDE 184
Query: 297 LK------GLPSRGDVE----------PGDIPSLLDL-GLSQSAAMSQGGKPAANSMKGG 339
G R DV G+ P+L DL G + + A GG
Sbjct: 185 HASDGDPGGRDPRSDVTVPPLPDDAPVAGEFPALSDLVGTADANADRAPDDRGVLPFDGG 244
Query: 340 ETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
ET AL R++ + A + K ++G + GA++S K SPWL GCLSPR + E+
Sbjct: 245 ETAALDRVESYVWAGDHLREYKETRNG----LLGADYSSKFSPWLNEGCLSPRYVKAEVD 300
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ A ND + WL+FEL WRDFF+
Sbjct: 301 R----YEARRVEND--------STYWLVFELRWRDFFQ 326
>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
Length = 576
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 175/324 (54%), Gaps = 39/324 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIES 184
IVWFRNDLR+ DNESL A S S+LPVYC DPR + + F KTG RA FLIE
Sbjct: 85 CIVWFRNDLRILDNESLLQAWLSSDSLLPVYCVDPRLFHTTHHFAFPKTGALRAQFLIEC 144
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DL+ NL RG +L +R GKPE +L LA+A A VYA +E +E+ E + A++
Sbjct: 145 LADLKNNLMKRGLNLFIRHGKPEDILPSLARAFSAHTVYAQKETCSEELIVERLVSKALQ 204
Query: 245 DEGI-----------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+ +++ WGST+YH+DDLPF +P Y F + V IR ++
Sbjct: 205 RVNLPPSPDKFTSQPKLQLVWGSTMYHIDDLPFNANNIPDVYTQFPKCV----IRGCLKI 260
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLS-QSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
L P D G +PSL LGL Q A +G + GGET AL R+ ++
Sbjct: 261 PVTLAPSPPVDDW--GCVPSLDQLGLQPQKARFIKGMR-----FLGGETAALSRVYEYF- 312
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ K K+ + + G ++S K SPWLA G LSPR +++++K+ A ND
Sbjct: 313 -WKKDLLKIYKE-TRNGMLGPDYSTKFSPWLASGSLSPRFIYEDVKRYENERQA----ND 366
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+ W++FEL+WRD+FR
Sbjct: 367 --------STYWVLFELIWRDYFR 382
>gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
algicida OT-1]
gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
algicida OT-1]
Length = 432
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 171/318 (53%), Gaps = 28/318 (8%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + +VWFRNDLR+HD SL A E+ V+ VYCFDPR + K GF KTG YRA FL
Sbjct: 1 MTKTGLVWFRNDLRIHDQVSLVKAAKENSFVMAVYCFDPRHFEKDRFGFVKTGKYRAQFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
IE+VSDL+ L L V KPE V+ E K +VY+ +E + +EV ++
Sbjct: 61 IETVSDLQNQLNELNIPLFVHFEKPEKVVSEYVKIHKVTSVYSQKEWTSEEVAVSSAVKK 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGL 300
A+ +E V+ + L+H +D+P + ++P + FR+K K +IR+ L+ + +
Sbjct: 121 ALSNEVNWVESY-DQFLFHPEDIPMTIDKIPQVFTVFRKKCEKYAQIRE----LETISKM 175
Query: 301 PSRGDV-EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QP 358
P + V +P+L DLGL A Q + A KGGET ALQRL+ +A +
Sbjct: 176 PEKNRVTHLTKVPTLHDLGL---PAFEQDTRTAF-PFKGGETAALQRLQDYAWNTKKLSY 231
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G +S K S WLA G LSPR ++ E+KK + I
Sbjct: 232 YKKTRNG----LVGTAYSSKFSAWLANGSLSPRMIYHEVKKYESEI------------IK 275
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FEL+WRDFF+
Sbjct: 276 NQSTYWMIFELIWRDFFK 293
>gi|448568178|ref|ZP_21637755.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727128|gb|ELZ78742.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 503
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 180/338 (53%), Gaps = 44/338 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR +PE+VL E+A A+ AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVRESRPESVLPEVAAAVDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEAL---- 294
E ++D G+E++ FWG TL HLDDLP L ++P Y FR+ V+ E T +A
Sbjct: 125 ETELRDGGVELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVESAAEDAGTGDAAAGDE 184
Query: 295 DQLKGLPSRGDVEP--------------GDIPSLLDL-GLSQSAAMSQGGKPAANSMKGG 339
G P D P GD+P++ DL G + + A GG
Sbjct: 185 HASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRAPDDRGVLPFDGG 244
Query: 340 ETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
ET AL R++ + A + K ++G + GA++S K SPWL GCLSPR + E+
Sbjct: 245 ETAALDRVESYIWAGDHLREYKETRNG----LLGADYSSKFSPWLNEGCLSPRYVKAEVD 300
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ A ND + WL+FEL WRDFF+
Sbjct: 301 R----YEARRVEND--------STYWLVFELRWRDFFQ 326
>gi|449134940|ref|ZP_21770404.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
gi|448886419|gb|EMB16826.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
Length = 488
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 112/314 (35%), Positives = 171/314 (54%), Gaps = 26/314 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E L A+ V+C DPR + GF +TGP+RA FLIE +
Sbjct: 4 ALVWFRNDLRTIDHEPLLRASTAD-RCFAVHCIDPRQFETVELGFHRTGPFRARFLIECL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL +L ++ D+V+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQDLLPSLSIDSVHFHYEPGTEEASTAESVQQLCDR 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
G+ +G TL H DDLPF++ + P + FR+++ K E R ++ + G LP
Sbjct: 123 HGVSTHVAYGDTLIHPDDLPFEIADTPGLFTDFRKEIEKQCEARSPLDEPARFNGTLPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA-EYQAQPPKGN 362
DV GDI +L LGLS + ++ N GG+ QR++ + E + + K
Sbjct: 182 -DVSAGDILALESLGLSTPPSDAR----CMNQFPGGQNAGQQRIEDYIWNEDRLRIYKET 236
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + N S K SPWLA GC+SPR + D++++ E +
Sbjct: 237 RNG----MLEPNDSSKFSPWLAHGCVSPRMIADQVRRYE------------EERVENKST 280
Query: 423 NWLMFELLWRDFFR 436
W++FELLWRD+FR
Sbjct: 281 YWMIFELLWRDYFR 294
>gi|326799096|ref|YP_004316915.1| DASH family cryptochrome [Sphingobacterium sp. 21]
gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
Length = 434
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 172/311 (55%), Gaps = 28/311 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLRV DNE L A ++ V+PVY FDPR + +G KTG RA F++ESV
Sbjct: 7 LVWFRNDLRVRDNEILWQALAKADRVVPVYVFDPRQFTPLKNGMHKTGVIRAKFILESVQ 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +L++ G+DL+V G PE +L LA+ VY HREV+ +E +E A+ +
Sbjct: 67 DLRLSLRSLGADLLVVSGYPEEILPTLAERYQVKEVYHHREVAKEETHISTLVEEALWKK 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ +++F G TLYH +DLPF + ++P + FR+K+ + IR ++E +++ +P +
Sbjct: 127 RLNLRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIERETTIRPSVETPVKIE-VPD--N 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+E +IPSL LG S G + KGGETE L+RL+ A G+
Sbjct: 184 LEASEIPSLASLGFSAGLI----GIADQSPFKGGETEGLRRLETLLAGADTASLTGS--- 236
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+G+ +SPW+AMGCLS +++ +K K+ D A + +
Sbjct: 237 -----FGSEEGTVLSPWIAMGCLSVHTVYHAVK----------KYEDKSLPKKQAAA--I 279
Query: 426 MFELLWRDFFR 436
+ LLWRD+FR
Sbjct: 280 ITGLLWRDYFR 290
>gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis]
Length = 1184
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 191/332 (57%), Gaps = 36/332 (10%)
Query: 126 SIVWFR-NDLRVHDNESLNTANN-----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
+++WFR DLR+HDN ++ A + VLP++CFDPR + S+ G KTG +RA
Sbjct: 17 AVIWFRGTDLRLHDNAIVHEAARRVEAGQVAEVLPLFCFDPRYFQASAWGSPKTGQFRAR 76
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA---DAVYAHREVSHDEVKSE 236
FL+ESV DL+ L+A GSDL++ +G+PE VL L G+ V A EV+ +E+ E
Sbjct: 77 FLLESVRDLKARLRALGSDLLICMGRPEEVLPGLMAQRGSGLQTCVLAQSEVTSEELAIE 136
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG--EMPTNYGGFREKVKG-VEIRKTIE- 292
+K+++A+ G ++ +WGST+YHL+DLPF+ G +MP + F++K + ++RK
Sbjct: 137 KKVKSAVVAAGGKLDLYWGSTMYHLEDLPFREGLRDMPDVFTPFKQKCEDRCQVRKPFPA 196
Query: 293 ----ALDQLKGL-PSRGDVEPG---DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
AL GL +R EP D+ +++ G Q A+ + + A +GGE+ AL
Sbjct: 197 PAPGALPLPAGLEAARLAFEPQRVEDLNAVVPEGHPQLASPQRDTR-AVLDFEGGESAAL 255
Query: 345 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 404
RL+ + + + + G ++S K++PWLA GCLSPRS++ ++K+
Sbjct: 256 ARLRYYLFDSNL---VATYFDTRNGMLGGDYSTKLAPWLAHGCLSPRSVYYDIKRY---- 308
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ ++G++ + W++FEL+WRDF+R
Sbjct: 309 -------ERQTGTANKSTYWVVFELIWRDFYR 333
>gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex]
Length = 520
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 173/319 (54%), Gaps = 26/319 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R +I FRNDLR HDNE + A+ + VLP+YCFDPR + G F KTG +R FL+
Sbjct: 10 RVAICLFRNDLRYHDNEVIALAHKSADFVLPLYCFDPRHFEGTHHYKFPKTGIFRTQFLL 69
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAV--YAHREVSHDEVKSEEKIE 240
ESV D R+ L RGS+L++ KPE L+++ K++ V EV+ +E E++++
Sbjct: 70 ESVEDFRQTLVKRGSNLMIVHSKPEEALLKIFKSLTGLKVTLILQTEVTKEETDVEKRLQ 129
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG 299
++ WGSTLYH DLPF++ +P +Y GFR+ V + + IR I D++K
Sbjct: 130 KICQEIKASYINCWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLRIRPEISMPDKMKP 189
Query: 300 LPSRGDVEP-GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+P+ P G++P++ L ++ S P GGET AL RLK + + A
Sbjct: 190 VPTFAHEIPWGNLPTIEALNSTKPIPNSSSAFP----FNGGETAALLRLKSYLWDTNAVA 245
Query: 359 P-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + G+++S K S WL+ GCLSPR + EL+K +
Sbjct: 246 QYKETRNG----LIGSDYSTKFSSWLSHGCLSPRRIHWELEKYEL------------QRT 289
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ W+ FELLWRD+F+
Sbjct: 290 KNQSTYWVRFELLWRDYFK 308
>gi|448600883|ref|ZP_21656262.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734896|gb|ELZ86452.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 503
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 179/338 (52%), Gaps = 44/338 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR +PE+VL E+A A+ AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVRESRPESVLPEVAAAVDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEAL---- 294
E ++D G+E++ FWG TL HLDDLP L ++P Y FR+ V+ E T +A
Sbjct: 125 ETELRDGGVELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVESAAEDAGTGDAAAGDE 184
Query: 295 DQLKGLPSRGDVEP--------------GDIPSLLDL-GLSQSAAMSQGGKPAANSMKGG 339
G P D P GD+P++ DL G + + A GG
Sbjct: 185 HASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRAPDDRGVLPFDGG 244
Query: 340 ETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
ET AL R++ + A + K ++G + GA++S K SPWL GCLS R + E+
Sbjct: 245 ETAALDRVESYVWAGDHLREYKETRNG----LLGADYSSKFSPWLNEGCLSSRYVKAEVD 300
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ A ND + WL+FEL WRDFF+
Sbjct: 301 R----YEARRVEND--------STYWLVFELRWRDFFQ 326
>gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|97047786|sp|Q3IPX9.1|CRYD_NATPD RecName: Full=Cryptochrome DASH
gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 474
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 175/312 (56%), Gaps = 23/312 (7%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR+DLRV DN +L A + +V+PVY FDP Y +S G KTG +RA F ++V
Sbjct: 4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAV 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR +L+ RG DL+VR G+P TV+ ELA+ GADAVYA + + +E + + +A+ D
Sbjct: 64 ADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDD 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
GI ++ W TLYH DDLP ++ + +R++ + + + + +P+
Sbjct: 124 AGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPET--VPTPDG 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE-YQAQPPKGNKD 364
+ PG +P++ LG+S+ + A +GGE+ +R++ + E + K ++
Sbjct: 182 LTPGPVPTVESLGVSEPPTDDR----AVLEFEGGESAGKRRVESYIWEGDHLREYKTTRN 237
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + GA++S K SPWLA GCLSPR + E+++ A + W
Sbjct: 238 G----LLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANED------------TYW 281
Query: 425 LMFELLWRDFFR 436
L+FEL WRDFF+
Sbjct: 282 LVFELAWRDFFQ 293
>gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase [Gramella forsetii KT0803]
gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
KT0803]
Length = 438
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 172/312 (55%), Gaps = 26/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+ D+E+L TA N ++ +YCFDPR Y K GF KTG +R+ FLIE++
Sbjct: 15 LVWFRNDLRISDHEALTTACNSHEKIIGIYCFDPRHYLKDQFGFIKTGKFRSKFLIETIE 74
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+KNL+ +L+V KPE ++ E+ +VY +E + +E E+++ + D
Sbjct: 75 ELQKNLETLNIELLVFQEKPEDIIPEIISEYSVKSVYFQKEWTQEEHDVEKEVRRLVND- 133
Query: 247 GIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG-LPSRG 304
IE ++ L+H +D+PF ++P Y FR K E + L L LP+R
Sbjct: 134 -IEFNSYYQQFLFHPEDIPFSSFNDIPKVYTEFR---KSCEKYSKVRELVNLPSPLPARN 189
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
E IPS DLG + K +A KGGE +A +R++++ ++++ K+
Sbjct: 190 LPEKAKIPSFKDLGHDD----YEKDKRSAFPFKGGEDQAKKRIQEYF--WESKNLTRYKE 243
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
++ I GAN+S K+S WLA G +S R ++ E+KK I +S + W
Sbjct: 244 TRNEMI-GANYSSKLSAWLANGSISARQVYHEVKKFEKEI------------TSNLSTYW 290
Query: 425 LMFELLWRDFFR 436
L+FEL+WRDFF+
Sbjct: 291 LIFELIWRDFFK 302
>gi|448602354|ref|ZP_21656410.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445747869|gb|ELZ99323.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 507
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 182/345 (52%), Gaps = 55/345 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFVFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +E++SDLR +L+ RGSDL+VR G PE+VL E+A + AD V H + +E E +
Sbjct: 65 FRLEALSDLRASLRDRGSDLLVREGTPESVLPEVATTVDADVVTVHTRPTPEESSVESAV 124
Query: 240 EAA----MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL- 294
E+A ++D+G+E++ FWG TL H+DDLP L +P Y FR+ V+ +A
Sbjct: 125 ESAVETELRDDGVELRRFWGHTLTHVDDLPMALSALPDTYTTFRKAVESAAEDADADAET 184
Query: 295 ---DQLKGLPSRGD--VEP------------GDIPSLLDLGLSQSAAMSQGGKPAANS-- 335
G P+ GD EP GD+P++ DL + A PA +
Sbjct: 185 GPGSARGGDPAGGDPLSEPTVPPLPRDAPDAGDLPAVSDLAGNSDAEFD----PAPDDRG 240
Query: 336 ---MKGGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR 391
GGET AL R++ + A + K ++G + GA++S K SPWL GCLSPR
Sbjct: 241 VLPFDGGETAALDRVESYVWAGDHLREYKETRNG----LLGADYSSKFSPWLNEGCLSPR 296
Query: 392 SMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ E+ + A ND + WL+FEL WRDFF+
Sbjct: 297 YVKAEVDRYEDRRVA----ND--------STYWLVFELRWRDFFQ 329
>gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis]
gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis]
Length = 578
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 181/355 (50%), Gaps = 68/355 (19%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLR+ DNE L A S +VLPVYC DPR + + GF KTG RA F+IE
Sbjct: 57 TAIVWFRNDLRILDNEVLFKAWLSSEAVLPVYCVDPRLFQTTHYFGFPKTGALRAQFIIE 116
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL+KNL RG +L++R GKPE VL LA+A A VYAH+E +EV E+ + A+
Sbjct: 117 CLADLKKNLMKRGLNLLIRHGKPEEVLPSLAQAFAAHTVYAHKETCSEEVHVEKLMNKAL 176
Query: 244 KDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK-------- 281
+ +++ WGST+YH+DDLPF + +P ++ FR+
Sbjct: 177 HRVKLSPPPDSKASANTTPKLQLIWGSTMYHIDDLPFNITSLPDDFFDFRKARIIPFFML 236
Query: 282 --VKGVE----IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS 335
++ VE +R I+ L P+ D G +PS+ LGL + A
Sbjct: 237 LMLQIVEPKCAVRSCIKIPKSLAPPPTVEDW--GCVPSIHQLGLEEQKARGM-------R 287
Query: 336 MKGGETEALQRLKKF--------------AAEYQAQPPKGNKDGNHDSIYGANFSCKISP 381
GGE+ A+ R+ ++ A+ K ++G + G ++S K SP
Sbjct: 288 FLGGESAAISRVYEYLWKKASGICLLNLHCCSDLAKTYKETRNG----LLGLDYSTKFSP 343
Query: 382 WLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
WLA G LSPR +++E+K+ A ND ++ ++F LLWRD FR
Sbjct: 344 WLAQGSLSPRFIYEEVKRYERERLA----ND--------STHRVLFVLLWRDHFR 386
>gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293557|ref|ZP_21483662.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445570418|gb|ELY24981.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 503
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 179/345 (51%), Gaps = 58/345 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR D R+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDHRLH-DNAAFAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR G+PE+VL E+A A+ AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVREGRPESVLPEVAAAVDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E ++D G+E++ FWG TL HLD LP L ++P Y FR+ V+ + A D G
Sbjct: 125 ETELRDGGVELRRFWGHTLTHLDGLPMALSDLPDTYTTFRKAVE-------LAAEDAGTG 177
Query: 300 LPSRGDV--------------EP------------GDIPSLLDL-GLSQSAAMSQGGKPA 332
+ GD EP GD+P++ DL G + + A
Sbjct: 178 DAAAGDEHASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRAPDDRG 237
Query: 333 ANSMKGGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR 391
GGET AL R++ + A + K ++G + GA++S K SPWL GCLSPR
Sbjct: 238 VLPFDGGETAALDRVESYIWAGDHLREYKEARNG----LLGADYSSKFSPWLNEGCLSPR 293
Query: 392 SMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ E+ + ND + WL+FEL WRDFF+
Sbjct: 294 YVKAEVDRYEDRRVE----ND--------STYWLVFELRWRDFFQ 326
>gi|428182576|gb|EKX51436.1| induced by DNA damage [Guillardia theta CCMP2712]
Length = 493
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 180/331 (54%), Gaps = 44/331 (13%)
Query: 127 IVWFRNDLRVHDNESLN------TANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
++WFRNDLR+ DN + A+N ++SVLPVYCFDPR + +S G KTG RA F
Sbjct: 7 VLWFRNDLRLTDNVLIAEASKRFLASNSALSVLPVYCFDPRFFAQSQYGPRKTGVLRAKF 66
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ESV+DL+K LQ GSDL+V GKPE ++ L ++ V A EV+ +E++ + ++
Sbjct: 67 LLESVADLKKRLQGVGSDLLVLSGKPEVIIPRLMQSGEDTTVLAQEEVTDEELRVDRAVK 126
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLG--EMPTNYGGFREKV-KGVEIRKTIEALDQL 297
A+ G ++ WG TL+H DDLP++ G +MP + F+E + ++RK
Sbjct: 127 RAIAPLGGKLHLLWGHTLFHRDDLPYRQGLTDMPDVFTPFKEACERKSKVRKCFP----- 181
Query: 298 KGLPSRGD--VEPGD-------IPSLLDLGLSQSAAMSQGGKPAANSM---KGGETEALQ 345
P +G+ V P D +PSL LG S + + KP S+ GGE+ L
Sbjct: 182 --YPVKGNLGVVPEDAKKLDEGLPSLESLGFS-AQEVEGAAKPDPRSVLQFVGGESAGLD 238
Query: 346 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
R++ + + Q + + + GA++S K S WLA GC+SPR +++E+++ +
Sbjct: 239 RIQHYIWK---QDCLKDYFETRNGMIGADYSSKFSAWLAHGCISPRFIYEEVQRYES--- 292
Query: 406 AASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ WL+FEL+WRDFFR
Sbjct: 293 ---------QRVKNKSTYWLIFELIWRDFFR 314
>gi|156354106|ref|XP_001623243.1| predicted protein [Nematostella vectensis]
gi|156209922|gb|EDO31143.1| predicted protein [Nematostella vectensis]
Length = 524
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 178/331 (53%), Gaps = 46/331 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRASF 180
++ I RNDLR HDNE+L A+ + VLP+YCFDP D+ K++ F KT YRA F
Sbjct: 7 QKTVICLLRNDLRYHDNEALLWAHKNADFVLPLYCFDP-DHYKTTWRFSLPKTAQYRAKF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKP---ETVLVELAKAIG-ADAVYAHREVSHDEVKSE 236
L+ESV+DLR LQ GS+L++R +P T L EL K + ++ +EV+++E+ E
Sbjct: 66 LLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTYEELNVE 125
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE----IRKTIE 292
+ + K GI + WGSTL+H DD+P+K +P Y FR KGVE +R I+
Sbjct: 126 KALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAKTVPDTYTQFR---KGVENQSTVRNLID 182
Query: 293 ALDQLKGL-PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF- 350
LK L P +G++ G IP L L + + + + +A GGE EAL RL +
Sbjct: 183 MPKNLKPLPPVKGEL--GTIPDL--KSLLNDSEIKEVDQRSAFPFMGGEQEALSRLGSYL 238
Query: 351 -----AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
A+Y+ + + G N+S K+SPWLA G LSPR ++ +K+
Sbjct: 239 WGTDSVAKYKE---------TRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYE---- 285
Query: 406 AASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
E + + W++FEL+WRD+F+
Sbjct: 286 --------EERVANHSTYWVLFELIWRDYFK 308
>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 180/340 (52%), Gaps = 50/340 (14%)
Query: 124 RASIVWFRNDLRVHDNESL-------NTANNES--VSVLPVYCFDPRDYGKSSSG-FDKT 173
+ +++WFRNDLR+HDNESL N++NN + V VLP+YCFDPR +G S G F K
Sbjct: 9 KKALLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGKFRKA 68
Query: 174 GPYRASFLIESVSDLRKNLQAR-GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE 232
R FL ESV +LRKNL G L++++G PE ++ L + V+A +EV+ +E
Sbjct: 69 NANRTRFLTESVDNLRKNLMNEWGLKLMIQIGHPEEIIPHLCSQYEIEQVFADKEVTSEE 128
Query: 233 VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE 292
E+ +E I V Y +G ++ H++DLPFK+ +P + FR KV+ ++ +
Sbjct: 129 TSIEQVLEKQ-----INVNYSYGFSMVHVEDLPFKIENLPHVFTDFRRKVENPKL--IVR 181
Query: 293 ALDQL-----KGLPSR------GDVEPGDIPSLLDLGLSQ---SAAMSQGGKP-AANSMK 337
L QL K + SR + G P L LG + S M P + K
Sbjct: 182 PLLQLSPNEKKLISSRVVNLIQDENALGKTPDLKVLGYTDEEISEMMENLKDPRSVLHFK 241
Query: 338 GGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 396
GGE EAL RL + + + + K ++G + G +S K+SPWL++GC+SPR ++ E
Sbjct: 242 GGEDEALARLNDYLWTQDRLKTYKETRNG----LVGEAYSSKLSPWLSLGCISPRKIYHE 297
Query: 397 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+K+ + + WL+FELLWRD+FR
Sbjct: 298 VKRYE------------KERVENDSTYWLIFELLWRDYFR 325
>gi|195657177|gb|ACG48056.1| hypothetical protein [Zea mays]
Length = 207
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 108/150 (72%), Gaps = 1/150 (0%)
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS-MKGGETEALQR 346
+K +EA +++K +P + +EPGDIP+L +LGL+ AMSQ KPA S + GGETEAL+R
Sbjct: 32 KKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALER 91
Query: 347 LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
LKKFAAE QP K +K DSIYGANFSCKISPWLA GCLSPR M++ELKK AT
Sbjct: 92 LKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIP 151
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
G+S AG+NWLMFELLWRDFFR
Sbjct: 152 FGSTPKNNDGTSDAGTNWLMFELLWRDFFR 181
>gi|257388282|ref|YP_003178055.1| DASH family cryptochrome [Halomicrobium mukohataei DSM 12286]
gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
Length = 483
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 162/314 (51%), Gaps = 22/314 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFR DLR HDN +L A E+ +V+P+YC R G+ G D+ GP+RA FLIES++
Sbjct: 5 LVWFRRDLRCHDNATLRRAVAEADTVVPLYCLPDRLTGEGMFGLDRVGPHRAQFLIESLA 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ R +L VR G P TV+ E A+ ADAVY +E + A + D
Sbjct: 65 DLRESLRDRDGELYVRSGDPGTVVPEAAEEFDADAVYWQALPGPEERDEAGSVRAGLADA 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS---R 303
GI+ + FW TLYH DDLP E+ + ++++ + + + + P+ R
Sbjct: 125 GIDSETFWTHTLYHRDDLPRPPDEIEDTFTPWKDRTEAKATVRPPKPAPEWVHAPNGGRR 184
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKGN 362
D+P+L D G + A GGET L R+ + E + +
Sbjct: 185 ASSGADDLPTLADFGFGEDEATVD--DRGVLDWTGGETAGLDRVATYVWERDCLREYRET 242
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + GA++S K SPWL+ GCLSPR + E+++ T ND +
Sbjct: 243 RNG----LVGADYSSKFSPWLSFGCLSPRQIHREVEQYETDRVE----ND--------ST 286
Query: 423 NWLMFELLWRDFFR 436
WL+FEL WRDFF+
Sbjct: 287 YWLVFELTWRDFFQ 300
>gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
Length = 520
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 178/339 (52%), Gaps = 48/339 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYG------KSSSGFDKTGPYR 177
+ ++VWFR DLRV DN +L A+ E+ + VYCFDPR++G K S ++KTG +R
Sbjct: 2 KTALVWFRTDLRVRDNRALAVAS-EAERLRCVYCFDPREFGSREYGGKDSFRYEKTGSHR 60
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE- 236
FL ESV LR +L+ RG++LVVR G+PE V+ LA I AD V H + +E E
Sbjct: 61 TRFLRESVEALRISLRERGNELVVRHGRPEEVVPSLAADIDADLVCFHALPTPEERAVER 120
Query: 237 ---EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTI 291
E++ D +V+ WG TLYH DD+P + E+ + FR+ V+ ++R T+
Sbjct: 121 AVTERLADPETDVDADVESIWGHTLYHPDDVPVPVAEIDDTFTTFRQTVERSDADVRPTV 180
Query: 292 EALDQLKGLPSR-------------GD-VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK 337
+ L +P GD ++PG IPS DLG+ + +
Sbjct: 181 DTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADLGVEPPTRDER----RVLDFE 236
Query: 338 GGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 396
GGE L+RL+++ + + K ++G + G+++S K+SPWL GCLSPR++F+
Sbjct: 237 GGEPAGLERLERYVWTRDRLREYKETRNG----LLGSDYSSKLSPWLNAGCLSPRTVFET 292
Query: 397 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+++ + WL+FELLWRDFF
Sbjct: 293 VQRYE------------RERVENESTYWLVFELLWRDFF 319
>gi|383622627|ref|ZP_09949033.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|448699507|ref|ZP_21699315.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|445780215|gb|EMA31115.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
Length = 474
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 174/313 (55%), Gaps = 27/313 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR+DLR+ DN +L A + V+P+Y DPR G++ G +K G +RA F ES+
Sbjct: 4 AVVWFRDDLRITDNPTLADAVTAADEVVPLYVVDPRKRGETEYGTEKLGAHRARFRRESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+LR LQ RG DL VR G+PETVL E+A + ADAVYA + + +E+++E + + D
Sbjct: 64 LELRAGLQDRGGDLFVRRGRPETVLPEVAGRVDADAVYAQTKPATEELETEVGVRETLPD 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
+ + + W TLYH+ DLP M + +R+ V + +R + D +P+
Sbjct: 124 D-VSFERRWTHTLYHVSDLPTSYERMQDTFTPWRKAVERECSVRDLVAPPD---AVPT-P 178
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPKGNK 363
D+ GD+P++ + GL + A +GGE+ +RL++ F E + + K +
Sbjct: 179 DLPAGDVPTVSEYGLEAPTDDDR----AVLRFEGGESAGKRRLEEYFWEEDRLREYKETR 234
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+G + GA +S K SPWLA GCLSPR + +E+++ + S +
Sbjct: 235 NG----LLGAAYSSKFSPWLAAGCLSPRWIHEEVRRYE------------DERVSNEDTY 278
Query: 424 WLMFELLWRDFFR 436
WL+FELLWRDFF+
Sbjct: 279 WLVFELLWRDFFQ 291
>gi|390445350|ref|ZP_10233099.1| DASH family cryptochrome [Nitritalea halalkaliphila LW7]
gi|389662339|gb|EIM73907.1| DASH family cryptochrome [Nitritalea halalkaliphila LW7]
Length = 460
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 169/303 (55%), Gaps = 24/303 (7%)
Query: 136 VHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQAR 195
+HD+ L +A ++ V+PVYC DPR +G G KTG +RA FLIE++ DLR L
Sbjct: 1 MHDHAPLFSAYDKDAEVIPVYCVDPRQFGTMRLGLPKTGSFRAKFLIEALRDLRLRLIDL 60
Query: 196 GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255
G+ L + GKPE VL + +A+ ADA+Y E++ +EV E+ +EAA G+ + FW
Sbjct: 61 GAQLHILYGKPEEVLPDFLRAVEADALYFSEEITSEEVAVEKAVEAAAWKAGVATESFWQ 120
Query: 256 STLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSRGDVEPGDIPS 313
TL+H+ DLPF +G+ P + FR++ K +IR A D+L P DV GDIP+
Sbjct: 121 QTLFHISDLPFPVGQTPEVFTQFRKECEKFSKIRPAYPAPDELYYPFP---DVPKGDIPT 177
Query: 314 LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGA 373
L LGL + +G +GGE AL RL+ + E K K+ + + GA
Sbjct: 178 LAVLGLEEPEVSDRG----VLVFEGGEGPALARLQTYFWENDCL--KVYKE-TRNGLLGA 230
Query: 374 NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRD 433
++S K SPWLA+GC+SPR +++E+ + + + WL+FEL+WRD
Sbjct: 231 DYSSKFSPWLALGCISPRYIYEEVARYE------------KERKKNQSTYWLVFELIWRD 278
Query: 434 FFR 436
+F+
Sbjct: 279 YFK 281
>gi|399576573|ref|ZP_10770328.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
gi|399238017|gb|EJN58946.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
Length = 492
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 171/324 (52%), Gaps = 36/324 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
+++WFR DLR+HDN L A + ++LPVYCFDPR+YG + G ++KTG +RA
Sbjct: 6 ALIWFRRDLRLHDNPVLVDAAR-AEALLPVYCFDPREYGTADFGGPDSFRYEKTGGHRAQ 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F ESV+DLR +L+A GSDL+V G+PETVL L ADAV+ + +E +E +
Sbjct: 65 FRRESVTDLRDSLRAAGSDLLVAHGRPETVLPALVSTTDADAVFFQTLPTSEERTTERAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
A +++EG+ V W TL HL DLP ++ + FR++V+ + + L
Sbjct: 125 TARLREEGVAVHRLWTHTLVHLADLPTPYTDIDDTFTPFRKRVESSSTARDPLDVPTLPP 184
Query: 300 LPS------RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
LPS R E +PSL LG+ + + GGE+ RL + +
Sbjct: 185 LPSATSSTKRATFET--LPSLSTLGVENPPVDER----RSLDFDGGESAGRDRLAAYLWD 238
Query: 354 YQA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+ + K ++G + GA++S K SPWL GCLSPR + E+ + A ND
Sbjct: 239 HDCLRVYKETRNG----LLGADYSSKFSPWLNEGCLSPRFVNAEVDRYEAERVA----ND 290
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+ WL+FELLWRDFF+
Sbjct: 291 --------STYWLLFELLWRDFFQ 306
>gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451814516|ref|YP_007450968.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780485|gb|AGF51454.1| DNA photolyase [Synechocystis sp. PCC 6803]
Length = 453
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 156/285 (54%), Gaps = 27/285 (9%)
Query: 155 VYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELA 214
+YC+DPR + ++ GF KTGP+R++FL +SV +L ++LQ G+ L+V G PE V+ ++A
Sbjct: 1 MYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIA 60
Query: 215 KAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN 274
K I A +Y HREV+ +E+ E + + GIE K +WGSTL H +DLPF + ++P
Sbjct: 61 KQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDL 120
Query: 275 YGGFREKV--KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLL-DLGLSQSAAMSQGGKP 331
+ FR+ + K + IR A QL P+ P + + +
Sbjct: 121 FTKFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVL------ 174
Query: 332 AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR 391
+ +GGET L RL+ + + K K+ + + GA++S K SPWLA+GCLSPR
Sbjct: 175 ---AFQGGETAGLARLQDYF--WHGDRLKDYKE-TRNGMVGADYSSKFSPWLALGCLSPR 228
Query: 392 SMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
++ E+K+ + S ++WL+FELLWRDFFR
Sbjct: 229 FIYQEVKRYE------------QERVSNDSTHWLIFELLWRDFFR 261
>gi|356522420|ref|XP_003529844.1| PREDICTED: LOW QUALITY PROTEIN: blue-light photoreceptor PHR2-like
[Glycine max]
Length = 201
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 120/165 (72%), Gaps = 9/165 (5%)
Query: 52 QPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPH 111
QP+ S + QP+K+KVPTQAS+LTH+SLS +T + SK SFKST+S NPL +SL H
Sbjct: 25 QPRTSPSTTLQPSKLKVPTQASSLTHLSLS--TTPASSKTSFKSTISINPLX--MSLSSH 80
Query: 112 RPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD 171
R DP+N AA+ VWFRNDL + DNE L ANN+S+S+L VYCF+P DYGKS+S F+
Sbjct: 81 RLCDPSNIAAL-----VWFRNDLHLLDNECLTAANNDSLSILLVYCFNPSDYGKSASNFN 135
Query: 172 KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
KTGPYR +FLI+ V DL +NL S+L++ V KPET+L EL K
Sbjct: 136 KTGPYRVAFLIDFVFDLYRNLXVGSSNLIMHVEKPETMLTELVKT 180
>gi|443244150|ref|YP_007377375.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
gi|442801549|gb|AGC77354.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
Length = 444
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 173/327 (52%), Gaps = 38/327 (11%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--------KTGPY 176
+++VWFRNDLRV DN SL A ++ V+ VYCFDP Y +S GFD KTG Y
Sbjct: 2 SNLVWFRNDLRVTDNHSLKAACDKEGDVIAVYCFDPAFYKESDFGFDLDFKLPFTKTGKY 61
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA F++E++ +L+ +L+ G L++ P V +L K ++ +E + DE++ E
Sbjct: 62 RAQFILEALENLKVDLEEHGIPLLIYHNAPAVVFPDLIKEHQIKKIFLQKEWTCDELQQE 121
Query: 237 EKIEAAMKDEGI--EVK--YFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKT 290
EK+ A++ G+ +VK + L+H DD+PF+ ++P + FR+K K EIR
Sbjct: 122 EKLGEALEQAGLKDQVKGHRVYDQFLFHPDDVPFESFNQIPRVFTEFRKKCEKQSEIRDL 181
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF 350
+ D + LP VE D+PSL DLGL + + P KGG T A +RL +
Sbjct: 182 VNIDDYKQELPK---VEQTDLPSLKDLGLEEFEKDHRSAFP----WKGGATAAWERLDHY 234
Query: 351 AAEYQA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
E + Q K ++G + G ++S K S WLA+G +S R ++ E+K +
Sbjct: 235 FWETKKLQYYKKTRNG----LIGTDYSSKFSAWLAIGSISAREIYWEVKHFEKEV----- 285
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFFR 436
+ WL+FEL+WRDFF+
Sbjct: 286 -------KKNQDTYWLIFELIWRDFFK 305
>gi|381205367|ref|ZP_09912438.1| deoxyribodipyrimidine photolyase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 516
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 172/315 (54%), Gaps = 27/315 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++VW RNDLR+HD+ L A +S +L +YC + ++ GF K R FL +
Sbjct: 50 RTTLVWLRNDLRLHDHLPLQCALEKSDRLLLIYCLPDSWFQPTTYGFPKISNVRLEFLFQ 109
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DLRK+ Q RG +L+ R G P V+ ELA+ D V+AHRE + +E + E+K+ +
Sbjct: 110 SLADLRKHAQERGGELIFRQGNPPKVIAELAEHYQVDGVFAHREHAPEEKREEDKLRETL 169
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
K + ++ + G++L +LPF L ++P + FR++V K V+I + I L P
Sbjct: 170 K---VPLRLYDGNSLLKETELPFSLVDLPKVFSNFRKQVEKEVQISRPIAVPKILPAQPQ 226
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKG 361
+ PG IP+L D+G + + GGET AL R++ + + A + K
Sbjct: 227 --NCLPGIIPNLEDMGFEPLIRDIR----SVYRFVGGETAALSRVQHYLWKSHAIKTYKK 280
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + + S K+SPWLA+GCLSP+ ++ E+++ + A ND
Sbjct: 281 TRNG----MLKPDDSAKLSPWLALGCLSPKHVYQEVRRYENDVIA----ND--------S 324
Query: 422 SNWLMFELLWRDFFR 436
+ WL+FE+ WR+FFR
Sbjct: 325 TYWLIFEIWWREFFR 339
>gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 425
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 169/314 (53%), Gaps = 34/314 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +++WFRNDLR HDNE L ++S ++PVYCFDPR + K SSG KTG +RA F+++
Sbjct: 4 KVTLIWFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFILD 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+V +L++ A G DL+ VG PE ++ LA + V+ HREV+ E E +E A+
Sbjct: 64 AVRELKEKFAAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
I +K+F G TLYH +DLPF + ++P ++ F++K+ + +R+ + + P
Sbjct: 124 WKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQPFPTPEVMVTHPH 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+E IP+L +LG + + P ++GGE EAL+++++ + G
Sbjct: 184 ---LEKTTIPTLEELGYTAEEIQTANNNPI--HLRGGEDEALKKVEEVLS--------GQ 230
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+ D + +SP++A G LSP ++ ++K D + + +
Sbjct: 231 FNEQLDYM-------MLSPYIAAGALSPIYLYHKIK-------------DAKLVLNKKRT 270
Query: 423 NWLMFELLWRDFFR 436
L +LLWRD+FR
Sbjct: 271 EKLTAQLLWRDYFR 284
>gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
Length = 425
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 169/314 (53%), Gaps = 34/314 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +++WFRNDLR HDNE L ++S ++PVYCFDPR + K SSG KTG +RA F+++
Sbjct: 4 KVTLIWFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFILD 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+V +L++ A G DL+ VG PE ++ LA + V+ HREV+ E E +E A+
Sbjct: 64 AVRELKEKFVAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
I +K+F G TLYH +DLPF + ++P ++ F++K+ + +R+ + + P
Sbjct: 124 WKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQPFPTPEVMVTHPH 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+E IP+L +LG + + P ++GGE EAL+++++ + G
Sbjct: 184 ---LEKTTIPTLEELGYTTEEIQTANNNPI--HLRGGEDEALKKVEEVLS--------GQ 230
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+ D + +SP++A G LSP ++ ++K D + + +
Sbjct: 231 FNEQLDYM-------MLSPYIAAGALSPIYLYHKIK-------------DAKLVLNKKRT 270
Query: 423 NWLMFELLWRDFFR 436
L +LLWRD+FR
Sbjct: 271 EKLTAQLLWRDYFR 284
>gi|433461813|ref|ZP_20419414.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
gi|432189636|gb|ELK46722.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
Length = 481
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 169/319 (52%), Gaps = 35/319 (10%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++ ++VWFRNDLRVHD+ L+ A V+ +Y FDP Y + G KT +RA FL
Sbjct: 1 MQNGALVWFRNDLRVHDHHPLHQAVQSGKPVIGMYVFDPAAYERGEDGIRKTDRHRARFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
IES+ DLRKNL A G L+VR + + E+ + I DAVY H E+ +E EE +
Sbjct: 61 IESIHDLRKNLGALGIPLIVRCRRTTEAIHEIKEKIKIDAVYVHEEIGREEQTVEENVRQ 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIE--ALDQL 297
A+ D V++ G LY DDLPF + E+P + FR++++ G +RK I A +
Sbjct: 121 ALPDTAFHVEH--GHNLYLPDDLPFSIQELPDTFSQFRKRLEKSGTSVRKAIAPPAPEDQ 178
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA-AEYQA 356
LP V GDIP+L LG + A GG +EA +RL + + +
Sbjct: 179 AELP----VPEGDIPTLETLGFDPA--------DEAPRYPGGSSEARKRLIDYIFTKDRL 226
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
+ K ++G + + S K SP+LA GCLSPR ++++++ A + +G +
Sbjct: 227 KIYKQTRNG----MLKEDDSSKFSPYLANGCLSPRVVYEQIQ--------AYERTNGANE 274
Query: 417 SSGAGSNWLMFELLWRDFF 435
S+ L FELLWRD+F
Sbjct: 275 STYM----LYFELLWRDYF 289
>gi|255533599|ref|YP_003093971.1| DASH family cryptochrome [Pedobacter heparinus DSM 2366]
gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
Length = 430
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 164/320 (51%), Gaps = 42/320 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HDNE L A +S S+LPVY FDPR + + G KTG RASFL+ES+
Sbjct: 7 LVWFRNDLRLHDNEMLVEAIAKSDSILPVYFFDPRYFENTRFGTAKTGIVRASFLLESIL 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
LRK Q G D+++ GKPE ++ +L + VY HREV +E + +E +
Sbjct: 67 SLRKAFQRFGGDILLVQGKPEDMIRDLVEQFDIAEVYHHREVGPEETEISGHVEDLLWTL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK----TIEALDQLKGLPS 302
I +K+F G TLY+ +DLPF + ++P + F++K + I K T E +D ++
Sbjct: 127 KINLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKACFLTPEHIDFVE---- 182
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF----AAEYQAQP 358
+ + G +PSL DLG A G GGE LQ L + A Y Q
Sbjct: 183 --NADWGQLPSLKDLGFETVA-----GAMIEKYATGGEDSGLQHLAQLLEAGADIYLKQN 235
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K + FS ++S WL +GCLSPR ++ ++K+ G
Sbjct: 236 TKHTPE-------KPGFSSRLSAWLTIGCLSPRMVYWKVKEA--------------EGVF 274
Query: 419 GAGSNW--LMFELLWRDFFR 436
G +N+ + LLWRD+FR
Sbjct: 275 GLNANFSQIFLGLLWRDYFR 294
>gi|255038083|ref|YP_003088704.1| deoxyribodipyrimidine photo-lyase, partial [Dyadobacter fermentans
DSM 18053]
gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
Length = 396
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 155/278 (55%), Gaps = 19/278 (6%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R I WFRNDLR+ DN++L+ A + ++PVY FDPR + K+ GF +TG RA FLIE
Sbjct: 3 RRIIYWFRNDLRLKDNQALSAAVGSADEIIPVYVFDPRQFEKTKLGFRRTGALRARFLIE 62
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV++LR+N++ +G DL++R G PE ++ +LA+ AD VY +E++ E + E + +
Sbjct: 63 SVAELRENIRQKGGDLIIRTGAPEAIVAQLAEDYNADYVYTSKEIAPQETRIESSLSKNL 122
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL---KGL 300
K +++K FW T+ + DLPF + ++P+ + F E++ + ++ DQ +
Sbjct: 123 KTANVDIKLFWMDTMINATDLPFPVSKLPSGFAEF-ERL----LSNDLKIKDQFPTPASI 177
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
DVE G IP L +LG+ + + P A GGE AL LK++ EY
Sbjct: 178 TLPADVEAGAIPGLPELGIDPNEIPAGTTGPLA----GGEARALAVLKEYVEEYV----- 228
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
KD + S ++S WL++GC+S ++ +K
Sbjct: 229 -KKDIAYPSAEPLT-DTRLSDWLSLGCVSASYIYRSVK 264
>gi|448622828|ref|ZP_21669477.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
gi|445753336|gb|EMA04753.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
Length = 518
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/352 (35%), Positives = 177/352 (50%), Gaps = 60/352 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES+SDLR +L+ RGSDL+VR G+PE+VL E+A A+ AD V H + +E E +
Sbjct: 65 FRLESLSDLRASLRDRGSDLLVREGRPESVLPEVAAAVDADVVTVHTRPTPEESSVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI---------RKT 290
E ++D+G+E++ FWG TL H+DDLP L +P Y FR+ V+ R +
Sbjct: 125 ETELRDDGVELRRFWGHTLTHVDDLPMALSALPDTYTTFRKAVESAAEDADADAATGRGS 184
Query: 291 IEALDQLKG-------------------------LPSRGDVEPGDIPSLLDL-GLSQSAA 324
D G LP R + GD+P++ DL G+ +
Sbjct: 185 ARVGDSAVGDHVGRNSSGRNLAGRDPLSEPTVPPLP-RDAPDAGDLPAVSDLVGIPDAEF 243
Query: 325 MSQGGKPAANSMKGGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWL 383
GGET AL R+ + A + K ++G + GA++S K SPWL
Sbjct: 244 DPAPDDRGVLPFDGGETAALDRVASYIWAGDNLREYKETRNG----LLGADYSSKFSPWL 299
Query: 384 AMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
GCLSPR + E+ + A ND + WL+FEL WRDFF
Sbjct: 300 NEGCLSPRYVKAEVDRYEDRRVA----ND--------STYWLVFELRWRDFF 339
>gi|409098421|ref|ZP_11218445.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 424
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 161/311 (51%), Gaps = 30/311 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HDNE L A ++S S+LPVY DPR +G++ G KTG RA F++ESV
Sbjct: 6 LVWFRNDLRLHDNEMLVEAISKSDSILPVYILDPRSFGETKYGTLKTGNIRAQFILESVL 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
LR +L+ G +L++ G PE ++ L + VY HREV+ +E +E A+
Sbjct: 66 GLRASLKQIGGNLLIAEGNPEDIIPSLVQEYEITEVYHHREVAREETHVSTLVENALWKL 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK-TIEALDQLKGLPSRGD 305
+ +K+F G TLY+ +DLPF + ++P + F++K++ I K A D++
Sbjct: 126 RVNLKHFIGHTLYNKEDLPFPIKDIPDAFNQFKKKIERDSIIKPCFLAPDRINVAEV--- 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ G + SL +L LS Q + A GGE E L L+K Q N
Sbjct: 183 IDWGTLSSLEELHLSP----QQKDQRADFEFTGGEAEGLVHLQKVIVAMQQAATAKN--- 235
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
K+S WLAMG LSPR ++ E+KK + + +N +
Sbjct: 236 -------LILVSKLSAWLAMGSLSPRKVYWEIKKMEGVPNTKAMFNH------------I 276
Query: 426 MFELLWRDFFR 436
+ LLWRD+FR
Sbjct: 277 LLGLLWRDYFR 287
>gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299]
gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299]
Length = 488
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 178/333 (53%), Gaps = 49/333 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANN-----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+VWFRNDLR+ DN ++ A + VLP+Y FDPR + SS G K G +R F
Sbjct: 3 VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPSSWGSPKCGGHRGRFQ 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVE-LAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ESV +L++NL+A GSDL+V VGKPE V+ + L A GA + EV +E++ + K++
Sbjct: 63 LESVLNLKRNLRAIGSDLLVAVGKPEEVIPKYLLDAPGAK----NEEVCSEELRVDAKVK 118
Query: 241 AAMKDEG--IEVKYFWGSTLYHLDDLPFK--LGEMPTNYGGFREKVKG-VEIRKTIEALD 295
+A+K G + WGSTLYH DDLPF+ ++P + FR KV+ E R+ +
Sbjct: 119 SAVKSAGNLNRLDKIWGSTLYHKDDLPFRSDASDLPDVFTPFRNKVESKSEPREPVPP-- 176
Query: 296 QLKGLPSRGDVE-PGDI-------PSLLDLGLS---QSAAMSQGGKP-AANSMKGGETEA 343
P++G + P D+ P++ DL + + A + G P +GGE+ A
Sbjct: 177 -----PAKGALPVPSDMTEAFAFEPTVADLPFANEDERAIAAAGAHPDGVLPFEGGESAA 231
Query: 344 LQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 403
L R++ + E + + + G ++S K++PWLA GC+SPR + E++K +
Sbjct: 232 LARVRYYVWESEKI---ATYFETRNGMLGGDYSSKLAPWLAHGCVSPRQVVAEVRKFES- 287
Query: 404 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ WL+FEL+WRDFF+
Sbjct: 288 -----------QRVENKSTYWLIFELIWRDFFK 309
>gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase [Zunongwangia profunda SM-A87]
gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
profunda SM-A87]
Length = 429
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 171/316 (54%), Gaps = 33/316 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WF N+LRV DN++L A + V+ VYCFDPR + K+ GF KTG +RA FLIES+
Sbjct: 5 LIWFENNLRVKDNKALFEACEKHEQVIAVYCFDPRKFKKTKYGFPKTGKFRAKFLIESIK 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++NL L++ + KPE ++ E+A+ +A+Y E + + E++I AA+K +
Sbjct: 65 NLQENLNQLNISLLIFLQKPEEIIPEIARNHKIEAIYFQEEWTTE----EKQIIAALKKK 120
Query: 247 --GIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
I+ + F+ L+H +D+ + E+P Y FR+K + V++RK IE Q P
Sbjct: 121 LPTIDFQSFYTQFLFHPEDIAYGDFNEIPKVYTEFRKKCEQYVDVRKEIEIPKQ---KPE 177
Query: 303 RGDVE-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLK-KFAAEYQAQPPK 360
++ P+L +LGL Q A S KGGE EA +R+ F + K
Sbjct: 178 SNRIKNTSKTPNLKELGLED----YQQDSRTAFSFKGGEDEAWKRIDYYFWKTTKLSEYK 233
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G ++S K+S WLA G +S S+F ++KK I +
Sbjct: 234 QTRNG----LLGKDYSSKLSAWLANGSISAVSIFHQVKKFEHEI------------TKNQ 277
Query: 421 GSNWLMFELLWRDFFR 436
+ WL+FEL+WRDFF+
Sbjct: 278 DTYWLIFELIWRDFFK 293
>gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
Length = 442
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 164/326 (50%), Gaps = 40/326 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--------KTGPYR 177
++VWFRNDLRV DN SL A + V+ +YCFDP Y S+ G D KTG +R
Sbjct: 3 NLVWFRNDLRVTDNHSLKKACDNDGKVIGIYCFDPIFYQNSNFGLDIDLELPFGKTGKFR 62
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
A F+IE++ DLRK L G L+V P V ++ K +Y +E + DEV+ E
Sbjct: 63 AQFIIEAIEDLRKQLDKHGIPLLVYHDSPVNVFPDIIKEYDITNIYLQKEWTRDEVEQEN 122
Query: 238 KIEAAMKDEGIEVK----YFWGSTLYHLDDLPF-KLGEMPTNYGGFREKV-KGVEIRKTI 291
+ A+K +EVK + LYH D+P+ E+PT + FR+K K IR +
Sbjct: 123 LLGTALK--LLEVKPKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRKKCEKESHIRTLV 180
Query: 292 EALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
+ D + LPS V IP L DLGL + P KGG A +RL +
Sbjct: 181 DIKDYQQELPS---VVSTTIPQLEDLGLESFEKDHRSAFP----WKGGAIAAWERLNHYF 233
Query: 352 AEY-QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
+ + Q K ++G + G ++S K+S WLA+GC+S R ++ E+++ +
Sbjct: 234 WDTGKLQYYKKTRNG----LVGIDYSSKLSTWLAIGCISAREIYWEVQRFEKEV------ 283
Query: 411 NDGESGSSGAGSNWLMFELLWRDFFR 436
+ WL+FEL+WRDFF+
Sbjct: 284 ------KKNQDTYWLIFELIWRDFFK 303
>gi|403349181|gb|EJY74032.1| putative bacterial cryptochrome [Oxytricha trifallax]
Length = 593
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 158/327 (48%), Gaps = 40/327 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESV---SVLPVYCFDPRDYGKSSSGF--DKTGPYRASFL 181
I+WFRNDLR+HDN +N A S ++PV+C+DPR + K F K G R FL
Sbjct: 74 ILWFRNDLRLHDNAIINYAVKHSAPNKQIVPVFCYDPRFHAKKVQQFGTQKCGLVRQRFL 133
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
IE+V + R NL+ GS L+V + +PE + +L + + E+ +E+ E ++
Sbjct: 134 IETVENFRHNLEKMGSKLLVSMERPEEFIPKLIDQECDNTIVYQDEICSEEMAVERAVQK 193
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ K G VK FWGS++YH+DDL F++ +P Y FRE V +R P
Sbjct: 194 SCK--GANVKTFWGSSVYHVDDLGFEIDHLPQVYTKFREVCGRVPVRSLFPN-------P 244
Query: 302 SRGDV----EPGDI--------PSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK 349
GD+ P DI P L D G ++ K + GGE AL+R K+
Sbjct: 245 KNGDLPFIENPSDIMTKATIFSPQLEDFGFTKEQIALGKDKRSVIEFIGGEDAALKRFKE 304
Query: 350 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
+ E QA + + + G N S + SPW+A G LSPR ++ ++K+ + K
Sbjct: 305 YVYETQAVSHYAD---TRNELLGENVSSRFSPWMAHGSLSPRYIYHKVKEYESKNQLTEK 361
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFFR 436
+ L+ E+ WRD+ R
Sbjct: 362 -----------STKKLIDEVFWRDWCR 377
>gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
Length = 1025
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 174/369 (47%), Gaps = 74/369 (20%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
A + ++WFRNDLR+HDN ++ A E+ VLPVYCFDPR YG + G KTG
Sbjct: 4 AGCGKRVVLWFRNDLRLHDNYIVHDAVQRVKRGEASEVLPVYCFDPRVYGTTPWGHFKTG 63
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAK-AIGADAVYAHREVSHDEV 233
+RA+FL+E V+DL+ L+ GSDL+V GKPE VL L + + G V EV+ +E
Sbjct: 64 AHRAAFLLECVTDLKSRLRDVGSDLLVAFGKPEEVLPGLLEGSSGPSLVLTAEEVTSEET 123
Query: 234 KSEEKIEAAMKDE----------------GIEVKYFWGSTLYHLDDL----------PFK 267
+++ + A+K + ++ FWG T+YH+DDL F
Sbjct: 124 RTDVAVARALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLTQPPEGGGKAAFA 183
Query: 268 LG--EMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD--VEPGDIPSL-------- 314
G +MP + FREKV K +RK + LP +GD + P +
Sbjct: 184 PGMKDMPDVFTPFREKVEKRCPVRKDLP-------LPQKGDLPLPPTEALPAAAAAALAA 236
Query: 315 -------LDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNH 367
L + A KGGET AL RL+ + + +
Sbjct: 237 APPTWEQLPYPPAARPPPPTKHPKAVLDFKGGETAALARLRYYLWDSDLIASYFD---TR 293
Query: 368 DSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMF 427
+ + G ++S K +PWLA GC+SPR ++ E++K S + W++F
Sbjct: 294 NGMLGGDYSTKFAPWLAAGCISPRKIYHEIRKYEAQR------------QSNKSTYWVIF 341
Query: 428 ELLWRDFFR 436
EL+WRD+FR
Sbjct: 342 ELIWRDYFR 350
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 114/283 (40%), Gaps = 68/283 (24%)
Query: 200 VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE------------- 246
V R G+P L + G V EV+ +E +++ + A+K +
Sbjct: 534 VSRHGRPHASSGLLEGSSGPSLVLTAEEVTSEETRTDVAVARALKQQRRPQADAAAAAGG 593
Query: 247 ---GIEVKYFWGSTLYHLDDL----------PFKLG--EMPTNYGGFREKV-KGVEIRKT 290
++ FWG T+YH+DDL F G +MP + FREKV K +RK
Sbjct: 594 GSGSAKLLRFWGHTMYHIDDLTQPPEGGGKAAFAPGMKDMPDVFTPFREKVEKRFPVRKD 653
Query: 291 IEALDQLKGLPSRGDVE--PGDIPSL---------------LDLGLSQSAAMSQGGKPAA 333
+ LP +GD+ P + L + A
Sbjct: 654 LP-------LPQKGDLPLPPTEALPAAAAAALAAAPPTWEQLPYPPAARPPPPTKHPKAV 706
Query: 334 NSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 393
KGGET AL RL+ + + + + + G ++S K +PWLA GC+SPR +
Sbjct: 707 LDFKGGETAALARLRYYLWDSDLIASYFD---TRNGMLGGDYSTKFAPWLAAGCISPRKI 763
Query: 394 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ E++K S + W++FEL+WRD+FR
Sbjct: 764 YHEIRKYEAQR------------QSNKSTYWVIFELIWRDYFR 794
>gi|390954368|ref|YP_006418126.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Aequorivita sublithincola DSM 14238]
gi|390420354|gb|AFL81111.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Aequorivita sublithincola DSM 14238]
Length = 434
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 165/316 (52%), Gaps = 33/316 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWF DLRV DN SL+ A E+ V+ VY FDPR + + GF KT +RA FLIE+V
Sbjct: 11 LVWFTKDLRVGDNHSLSKALTENEKVIGVYFFDPRHFDTTVYGFKKTEKFRAKFLIETVE 70
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRKNLQ L+V KPE + +L + ++Y RE + +EV + I+ D
Sbjct: 71 NLRKNLQKLNISLLVFHEKPEVIFPQLVEKYQIKSIYFQREWTSEEVAVSKNIQQKSPDC 130
Query: 247 GIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKG-VEIRKTI---EALDQLKGLP 301
+ Y L+H D+P+ E+P + FR+KV+ ++RK E Q+ +
Sbjct: 131 KLIKTY--DQFLFHSGDIPYSDFSEIPEVFTNFRKKVEANTKVRKCDGKPEIQSQINLVE 188
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP-K 360
+ +IP+L DLGL S+ P KGGE +RLK++ E ++ K
Sbjct: 189 NN-----TEIPTLSDLGLEDFETDSRSAFP----FKGGEDAGEERLKEYFWETKSLAKYK 239
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G ++S K S WLA G LSPR +++E+K+ + I +
Sbjct: 240 ETRNG----LLGEDYSSKFSAWLANGSLSPRFIYEEVKRFESEI------------TENE 283
Query: 421 GSNWLMFELLWRDFFR 436
+ WL+FELLWRD+F+
Sbjct: 284 STYWLIFELLWRDYFK 299
>gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
Length = 478
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 169/323 (52%), Gaps = 39/323 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
++VW R DLR DN +L A VLPVYCF+PR YG+ + G +D G RA
Sbjct: 5 AVVWLRRDLRTRDNATLAAACAAD-RVLPVYCFEPRRYGQRAFGGAASFEYDGVGAGRAQ 63
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F E+V DLR L+ GSDL VR G+P+ VL +L +A+ AD ++ +E E ++
Sbjct: 64 FEREAVGDLRDRLREIGSDLFVRHGRPDAVLPDLVEAVDADHLHYQTLPIPEERTREHQV 123
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLK 298
A+ E + V+ W TL+H++DLP EMP + +R+ V+ +R+ IEA +
Sbjct: 124 RRALP-EAVTVERHWTHTLHHVEDLPTPYDEMPDTFTPWRQSVEAESRVREPIEA-PAVP 181
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSM----KGGETEALQRLKKFAAEY 354
+P+ +PG IP L DLG+ G P + M +GGET +RL+++ E
Sbjct: 182 PVPADA-PQPGPIPELADLGVV-------GDVPDDDRMPLDFEGGETPGQRRLEQYVWET 233
Query: 355 QA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ + K ++G + G ++S K SPW +GCLSPR ++ +K+
Sbjct: 234 DSLRAYKQTRNG----LVGRDYSSKFSPWQNVGCLSPRDVYQTVKEYE------------ 277
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
S + WL FEL WRDFF+
Sbjct: 278 RERVSNDSTYWLNFELRWRDFFQ 300
>gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus]
Length = 571
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 173/336 (51%), Gaps = 45/336 (13%)
Query: 127 IVWFR-NDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
IVWF+ +DLR+ D+E L A+ ES V V+C D R +G++ G K R FL+ESV
Sbjct: 26 IVWFKYSDLRLEDHEPLALAHRESAQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESV 85
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE-------- 237
+DLR L+ RGSDL+VR G PE V+ LA +G +V +H +V SEE
Sbjct: 86 ADLRARLRERGSDLLVRRGHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADVHAAVK 145
Query: 238 ------KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVK---GVEI 287
+ VK WG+TL+ + DLPF +P + FR+ V+ ++
Sbjct: 146 SALAAASSAGRGGGAAVAVKEAWGNTLHDVADLPFDFPSGVPEIFTQFRKSVESKYSCKM 205
Query: 288 RKTIEALDQLKGLP---SRGDVE---PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGET 341
R + + +P ++ D E PG IP+ +LGL + + + GGET
Sbjct: 206 RPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTA---PERDARSVFPFNGGET 262
Query: 342 EALQRLKKFAA-EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKT 400
L+R++ + E + + K ++G + G+ FS K SPWLA+GCLSPR++ E++K
Sbjct: 263 AGLRRVQSYIWDEDRLREYKVTRNG----LLGSGFSSKFSPWLALGCLSPRTIVKEIRKY 318
Query: 401 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
T A ND + WL+FELLWRDFFR
Sbjct: 319 ETDRIA----ND--------STYWLIFELLWRDFFR 342
>gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818]
Length = 552
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 168/323 (52%), Gaps = 31/323 (9%)
Query: 124 RASIVWFR-NDLRVHDNESLNTANNESVS-VLPVYCFDPRDYG---KSSSG-FDKTGPYR 177
R ++VWFR +DLR+HD+E L A S V+PVYCFDPR G K+ G F K G R
Sbjct: 10 RPAVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDPRQVGPAAKTRCGQFPKCGWQR 69
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
F++E V DLR+NLQ GS+LVVRVG+PE V+ ++ GA V+ +EV +E E
Sbjct: 70 TRFIVECVEDLRRNLQRLGSNLVVRVGEPEEVIPDIVSITGATEVFGQKEVCSEETGVEH 129
Query: 238 KIEAAMKDEGIEVKYFWGS-TLYHLDDLPFK--LGEMPTNYGGFREKVKG-VEIRKTIEA 293
++ K + + WG+ TL H DDLP++ ++P + FR+ + V IR
Sbjct: 130 RL---AKRLSVPLTLRWGAITLCHRDDLPYERSCSDLPGVFSQFRKAAEACVPIRPPRPP 186
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
L+ LP +PG +P + L + A + G + GGET A R+K +
Sbjct: 187 PPSLQPLPQPIAGDPGHVPPVTQLSPNAPAKADERG---VLTFVGGETVARTRVKHYL-- 241
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ KD + + GA++S K SPWLA GC+S R + E+K+
Sbjct: 242 WDTDCIATYKD-TRNGLVGADYSSKFSPWLAHGCVSARWIHSEVKRYE------------ 288
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
+ WL+FELLWRD+FR
Sbjct: 289 RERVKNNSTYWLVFELLWRDYFR 311
>gi|403375006|gb|EJY87472.1| hypothetical protein OXYTRI_02690 [Oxytricha trifallax]
Length = 579
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 164/325 (50%), Gaps = 37/325 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESV---SVLPVYCFDPRDYGKSSSGFD--KTGPYRASFL 181
I+WFRNDLR+HDN LN A ++ ++PVY FD R + +D K G R F+
Sbjct: 71 ILWFRNDLRLHDNAILNYAVSQKTKNKEIIPVYSFDQRFLNRKVKKYDTLKCGLVRTRFI 130
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELA-KAIGADAVYAHREVSHDEVKSEE-KI 239
+ES + R L+ GS L+V + KPE L +L K + VY DE+ SEE +
Sbjct: 131 LESAQNFRDRLEKIGSKLLVTMDKPEDFLPQLIDKDVDNTIVY------QDEICSEELAV 184
Query: 240 EAAMKD--EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
E A+K+ EG ++ WGST+YH+DDL F E+P YG FREK V+IR A +
Sbjct: 185 EKAVKESCEGQKIVNLWGSTVYHVDDLGFHPKELPHIYGKFREKTADVKIRPLF-AQPKS 243
Query: 298 KGLPSRGDVEP------GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
LP + P +P+L D G ++ K A GGE A++RL ++
Sbjct: 244 GQLPYAKEPSPLMEEASKFMPTLKDFGFTKEQIEKPKDKRACYDFVGGEDNAVKRLNEYI 303
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
G+ +++ GAN+S K SPWLA G LSP+ ++ ++K+
Sbjct: 304 M---GTKSVGSYAITRNNLIGANYSSKFSPWLACGALSPKYIYYQVKEFE---------- 350
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
++ S + + EL WRDF+R
Sbjct: 351 --KTHKSNESTKVFLDELFWRDFYR 373
>gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
Length = 469
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 161/316 (50%), Gaps = 33/316 (10%)
Query: 127 IVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++WFRNDLR+HDN ++ A E+ VLPVY +DPR + + G KTG +RA F+
Sbjct: 11 VLWFRNDLRLHDNYIVHEAAQRVKRGEASEVLPVYVYDPRFFAATPWGALKTGAHRAKFI 70
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD-AVYAHREVSHDEVKSEEKIE 240
E V+DLR+ LQ GSDLVV VG+PE +L L + GA V EV+ +E + +
Sbjct: 71 QECVADLRQRLQGLGSDLVVAVGQPEQLLPALLEGGGAAPLVLTAEEVTSEEAAVDVAVA 130
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A+K G ++ +WG T+YH DDL ++P + F+EK VE R + L
Sbjct: 131 RAIKPAGGKLLRYWGHTMYHYDDL-----DLPDVFTPFKEK---VEKRAALP----LPPA 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
P G + + L A A KGGET AL RLK + +
Sbjct: 179 PRLGATAAAALAAPLPGWEQLPPAPPVTHPKAVLDFKGGETAALARLKYYLWDSDLLSTY 238
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
+ + + G ++S K +PWLA GC+SPR +F E++K + S
Sbjct: 239 FD---TRNGMLGGDYSTKFAPWLAQGCISPRKIFHEIRKYES------------QRFSNK 283
Query: 421 GSNWLMFELLWRDFFR 436
+ W++FEL+WRDFFR
Sbjct: 284 STYWVIFELIWRDFFR 299
>gi|412990437|emb|CCO19755.1| predicted protein [Bathycoccus prasinos]
Length = 558
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 181/358 (50%), Gaps = 69/358 (19%)
Query: 123 RRASIVWFRNDLRVHDNESLNTA------NNESVSVLPVYCFDPRDYGKSSSGFD----- 171
++ I+W RNDLRVHDN +L A ++E ++P Y FDPR + S FD
Sbjct: 16 KKRVILWHRNDLRVHDNLTLKEALTFCSESSELCELVPTYIFDPR-WFLSDDAFDRSDQK 74
Query: 172 ----------KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA 221
K RA FL+ESV DL++ + GSDL++++GK E VL A+ AD
Sbjct: 75 RREKSLTNAPKCSQRRAEFLLESVLDLKERYKRLGSDLLIKIGKSENVL----DALDADV 130
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK--------LGEMPT 273
V REV DE E K++ K E+K W +TLYH +D+ F+ L ++PT
Sbjct: 131 VVCSREVCEDERALERKVKRKAKG---ELKLVWDNTLYHYEDV-FESGNCYQNGLNDLPT 186
Query: 274 NYGGFREKVKG-VEIRKTI----EALDQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAM 325
+ F+ KV+ V +RK I E D LK S +V E +P++ D+ LS A
Sbjct: 187 QFTQFKNKVESKVSVRKPILNDAELSDGLKKFSSPSNVSEEEMQFVPTIEDIPLSDDARQ 246
Query: 326 SQGGKPAANSM------KGGETEALQRLKKFAAEYQAQPPK-GNKDGNHDSIYGANFSCK 378
P NS+ KGGE+EAL+R++++ E A ++G + + S K
Sbjct: 247 MHAAIPKDNSITPVYSFKGGESEALKRVQRYLYETDAVATYFDTRNGMLEDLE----STK 302
Query: 379 ISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
++P+LA+GC+SPR + +E++K + + W++FEL WRDF+R
Sbjct: 303 LAPYLALGCISPRFIENEIRKYE------------KERVENKSTYWVIFELTWRDFYR 348
>gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 561
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 177/339 (52%), Gaps = 35/339 (10%)
Query: 116 PNNGAAIRRASIVWFR-NDLRVHDNESLNTAN------NESVSVLPVYCFDPRDYGKSSS 168
P + AA R ++WFR DLR+ DN ++ A+ + V VLPV+CFDPR + S+
Sbjct: 2 PADDAASARV-LLWFRGTDLRLRDNLVVDAASALVASGSGDVDVLPVFCFDPRTFAASAW 60
Query: 169 GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREV 228
G KTG RA FL+ESV DL+++L+ GSDL+V VGKPE V+ G + V EV
Sbjct: 61 GTPKTGGRRARFLLESVLDLKRSLRDVGSDLLVAVGKPEDVIPRYLLEGGTNVVLTQEEV 120
Query: 229 SHDEVKSEEKIEAAMK--DEGIEVKYFWGSTLYHLDDLPFK--LGEMPTNYGGFREKVKG 284
+E + + I +A+K + ++ W ST+YH+DD+PF ++P + FR KV+
Sbjct: 121 HQEERRVDAAIASAVKIANPKNAMRTVWNSTMYHVDDIPFNADASDVPNGFTPFRNKVES 180
Query: 285 VEIRKTIEALDQLKGLP-SRGDVEPGDI---PSLLDLGLSQSAAMSQGGKP----AANSM 336
+ + LP ++ ++ + PSL DL + ++ P A
Sbjct: 181 KATVRAPAPSPKPGALPLAKASIDASVLEYEPSLDDLPFATEDERARAKAPTHPNAVLPF 240
Query: 337 KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 396
+GGET AL R++ + ++++ K + + + G ++S K+SPWLA GC+S R + E
Sbjct: 241 EGGETAALARVEYYV--WESEKIKTYFE-TRNGMLGGDYSSKLSPWLAHGCVSARHVHRE 297
Query: 397 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
++K + WL+FEL+WRDFF
Sbjct: 298 VRKYE------------RERVENKSTYWLIFELIWRDFF 324
>gi|88802284|ref|ZP_01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
gi|88781142|gb|EAR12320.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
Length = 436
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 162/312 (51%), Gaps = 26/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRN+LRV DN+SL A V+ VY FDP+ + S GF KT +R FLIE+++
Sbjct: 10 VIWFRNNLRVQDNQSLTKAIENHSKVIAVYFFDPKLFKIDSFGFQKTASFRTKFLIETIT 69
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL+KNL A L+ + PE + L +Y +E + +E+ ++ I++ + E
Sbjct: 70 DLKKNLAALNITLLTYMESPENKMHTLCDEFSVGTIYTQKEWTREEIATDNFIKSTLP-E 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ + LYH D + ++P + FR+KV K V + K + L R
Sbjct: 129 TVRFVADYDQFLYHPDAVSRDFSKIPDVFTIFRKKVEKTVAVEKEC----TVTKLSERNL 184
Query: 306 VEPGD-IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
+E IPS+ LG S + ++ P KGGET AL+RL+ + E + N
Sbjct: 185 IETETAIPSMESLGFSDTKTHAKTAFP----FKGGETAALERLQYYFFESKKVSFYKN-- 238
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
+ + G ++S K SPWLA G LS ++++ ++K+ + E GS+ + + W
Sbjct: 239 -TRNGLVGTDYSTKFSPWLANGSLSAKTIYWKIKEY-----------EAEFGSNQS-TYW 285
Query: 425 LMFELLWRDFFR 436
++FEL+WRD+F+
Sbjct: 286 VIFELIWRDYFK 297
>gi|126662376|ref|ZP_01733375.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
gi|126625755|gb|EAZ96444.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
Length = 440
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 167/314 (53%), Gaps = 26/314 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR DN SL A E+ +V+ +YC DPR + + GF KT +R+ FL+E+V+
Sbjct: 10 LVWFRNDLRTIDNHSLYNACRENDTVIGIYCLDPRHFEITPFGFKKTEKFRSQFLLETVT 69
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+KNL + L+V G PE ++ E+ ++Y+ E + +E + E++I +
Sbjct: 70 ELQKNLLEKNIRLLVYYGYPEILIPEIIAKYQIHSIYSQHEWTSEENEIEQEIRNLI--S 127
Query: 247 GIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
+ K + L+H DLPF+ ++P + FR+++ K + +R T+ + P
Sbjct: 128 AVNWKNHYDQFLFHPADLPFEDWKKIPEVFTDFRKQIEKKIRVRPTV----AISPKPLTN 183
Query: 305 DVEPGD-IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP-KGN 362
+E IP+L DLG A+ + + A KGGE A +R+K + + + K
Sbjct: 184 LIEETTPIPTLKDLGFDSEASDFKQPEKTAFPFKGGENHAKKRIKDYFWDTKKLAVYKKT 243
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + G N+S K+S WLA G +S R+++ E++K + +
Sbjct: 244 RNG----LIGKNYSSKLSAWLANGSVSARTIYWEVQKFEKKV------------IKNEDT 287
Query: 423 NWLMFELLWRDFFR 436
WL+FEL+WRD+F+
Sbjct: 288 YWLIFELIWRDYFK 301
>gi|374596767|ref|ZP_09669771.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Gillisia limnaea DSM 15749]
gi|373871406|gb|EHQ03404.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Gillisia limnaea DSM 15749]
Length = 433
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 165/315 (52%), Gaps = 28/315 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SIVWFRNDLR+ DN+SL+ A S V+ VY DP + GF KTG +RA FL+ES+
Sbjct: 4 SIVWFRNDLRIADNKSLSVACKNSEMVIGVYFMDPEKFEIGEFGFKKTGKFRAKFLLESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L NL+ L++ KPE+ EL + ++Y +E + +E K+ + + + +
Sbjct: 64 QELWDNLRKLNISLLIIKDKPESKFTELVERFQITSLYLQKEWTPEETKTLKAVTSILP- 122
Query: 246 EGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSR 303
E + VK + LYH +D+PF ++P + FR+K K ++R I ++ LP+
Sbjct: 123 EAVNVKEHYNQFLYHPEDIPFDTFRDIPQVFTEFRKKCEKNGKVRPVIPIPEK---LPNE 179
Query: 304 GDV-EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP-KG 361
+ E ++P+L +LG + P KGGE +A RL+ + E + K
Sbjct: 180 NLLSEIANLPTLKELGFENFETDPRTAFP----FKGGEDQAKIRLEDYFWETKKLAVYKK 235
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K S WLA GC+SP ++ E++K + +
Sbjct: 236 TRNG----LLGKDYSSKFSSWLANGCISPTIVYREIRKFEDKV------------TKNED 279
Query: 422 SNWLMFELLWRDFFR 436
+ WL+FELLWRDFF+
Sbjct: 280 TYWLIFELLWRDFFK 294
>gi|402493769|ref|ZP_10840518.1| DASH family cryptochrome [Aquimarina agarilytica ZC1]
Length = 432
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 155/312 (49%), Gaps = 25/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR++D +SL + + V+ VYCFDPR + S GF KT +R FLIE+V+
Sbjct: 5 LIWFRNDLRINDQQSLALSTQKHHKVIGVYCFDPRQFSTSVFGFKKTEKFRTQFLIETVT 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ NL L V PET+L E+ +Y +E + +E++ ++ A+ +
Sbjct: 65 QLKLNLAKYNIPLFVYSATPETMLPEIVTTHNCTHIYCQKEWTAEELQVTTAVKKALIPK 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
I + L+H D +PF + + P + FR K +E + + + ++ + +
Sbjct: 125 LIAWVESYDQFLFHPDSIPFSVEKTPQIFTHFR---KSIEKQTLVLPIAKISSSFKQQPI 181
Query: 307 EPGD-IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA-AEYQAQPPKGNKD 364
E IP L DLG S P KGGE AL RL + + K ++
Sbjct: 182 ENNSTIPKLTDLGFDNFETPSHSAFP----FKGGENAALDRLHNYIWVSKKISYYKKTRN 237
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + G+++S K S WLA G +S ++++ E+KK + ND + W
Sbjct: 238 G----LLGSDYSSKFSAWLANGSISAKTIYFEIKKYEKEVQK----ND--------STYW 281
Query: 425 LMFELLWRDFFR 436
L+FEL+WRD+F+
Sbjct: 282 LIFELIWRDYFK 293
>gi|363581247|ref|ZP_09314057.1| cryptochrome-like DNA photolyase [Flavobacteriaceae bacterium HQM9]
Length = 432
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 155/312 (49%), Gaps = 25/312 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLRV+D +SL A + SV+ VYCFDPR + GF KTG +R FLIE+V
Sbjct: 5 LIWFRNDLRVNDQKSLAEATRKHDSVIGVYCFDPRQFSTDPYGFIKTGKFRTQFLIETVE 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ NL L V KPE L E+ A +Y +E + +E+K ++ A+
Sbjct: 65 QLKLNLAKFNIPLFVYFNKPEDKLPEIISAHNCTHIYCQKEWTSEELKVTNAVKKALTKN 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ + LY D++ F + ++P + FR K VE +E L + + +
Sbjct: 125 LVAWIESYDQFLYQPDNIQFTIEKIPQVFTRFR---KSVEKYAKVEDLATIDPAYLQNPI 181
Query: 307 E-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP-PKGNKD 364
E I +L DLG + S P KGGE AL+RL + E + K ++
Sbjct: 182 ENKTKILNLTDLGFTYFETPSHTAFP----FKGGENSALERLNSYFWETKKLAYYKKTRN 237
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + G ++S K S WLA G +S ++++ ++KK I ND + W
Sbjct: 238 G----LLGTDYSSKFSAWLANGSISAKTIYIQVKKFEKEIKK----ND--------STYW 281
Query: 425 LMFELLWRDFFR 436
L+FELLWRD+F+
Sbjct: 282 LIFELLWRDYFK 293
>gi|448704049|ref|ZP_21700589.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445796665|gb|EMA47166.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 475
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 160/312 (51%), Gaps = 25/312 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR+DLR+ DN +L+ A + ++PVY FDPR G++ K GP+RA F ESV
Sbjct: 4 AVVWFRDDLRLTDNPTLSRALEAAERIVPVYVFDPRRRGETQYDTPKLGPHRARFRRESV 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DLR L+ R DL+V G E V+ EL A AVYA + + +E E + A+
Sbjct: 64 LDLRTRLRERDGDLLVETGHVEDVIPELVDRYDAAAVYAQTKPATEERSRERAVRRALPG 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ ++++ W TL+H +DLP + + + +R +V+ + + P+
Sbjct: 124 D-VDLRSQWTHTLFHPEDLPTAVDRIDDTFTPWRHEVEAEATPRKPAPAPESVPTPA--- 179
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKGNKD 364
V+ +P+L LG A + P +GGE+ +RL+ + E + K ++
Sbjct: 180 VDASTVPTLSALGFDDPPADHRAVLP----FEGGESAGKRRLEAYVWERDCLRTYKQTRN 235
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + GA++S K+S WLA GCLSPR + E+++ A + W
Sbjct: 236 G----LLGADYSSKLSAWLAAGCLSPRWVHREVQRYERERVA------------NEDTYW 279
Query: 425 LMFELLWRDFFR 436
L+FELLWRDFF+
Sbjct: 280 LVFELLWRDFFQ 291
>gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
Length = 787
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 173/353 (49%), Gaps = 47/353 (13%)
Query: 114 LDPNNGAAIRRASIV-WFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSS 167
L+P + + R +V WFRNDLR+ DN + A + V V+PVY FD + S
Sbjct: 234 LEPETTSGMGRTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSK 293
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAH 225
G + G R F +E V DL+ +L+A GSDL+VR GK V+ EL D +
Sbjct: 294 RGLARFGAGRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQ 353
Query: 226 REVSHDEVKSEEKIEAAMKDEG------IEVKYFWGSTLYHLDDLPFK----LGEMPTNY 275
EV+ +E + + +E A ++ ++ WGSTLYH+DD+PF L ++P +
Sbjct: 354 TEVTSEETEMDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVF 413
Query: 276 GGFREKVKG-VEIRKTIEA--LDQLKGLPSRGDVEPGD-IPSLLDLGLSQSAAMSQGGKP 331
FR KV+ ++R I A ++L +P+ VE + +P DL + S K
Sbjct: 414 TPFRNKVESKCKVRDVIPAPTANELGHVPA--SVEGFEWMPKPSDLPFASSEIAMDCDKR 471
Query: 332 AANSM--------KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWL 383
+ + KGGE+ AL R+K + E + + G ++S K++PWL
Sbjct: 472 IKDCLDERSVLDFKGGESNALARVKYYLWESDRLATYFE---TRNGMLGGDYSTKLAPWL 528
Query: 384 AMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
A+GC+SPR + E+++ + + W++FEL+WRDFF+
Sbjct: 529 ALGCVSPRHVVSEIRRYES------------ERVENKSTYWVIFELIWRDFFK 569
>gi|86134106|ref|ZP_01052688.1| cryptochrome, DASH family [Polaribacter sp. MED152]
gi|85820969|gb|EAQ42116.1| cryptochrome, DASH family [Polaribacter sp. MED152]
Length = 436
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 161/311 (51%), Gaps = 24/311 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRN+LR DN S+ A V+ +Y FDP+ + + GF KT +RA FL+E+++
Sbjct: 10 LIWFRNNLRTQDNTSIQKAIQNHDKVIAIYFFDPKYFKEDEFGFQKTAKFRAQFLLETIT 69
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL++ L+ L+ PE L+ + + D +Y +E + +E+ + + + M D
Sbjct: 70 DLKQQLKDLNITLLTYFDAPENQLLNITETYKVDTIYTQKEWTKEELDTNKLVLKTMSDT 129
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
V+ + LYH + + +P + FR+K+ K V+I++ I +D K S
Sbjct: 130 VNFVEDY-DQFLYHPETVSNNFSNIPNVFTQFRKKLEKYVKIQEEI-LID--KHDDSNLI 185
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
P +IPSL +LG + + P KGGET AL+RL + E G
Sbjct: 186 HNPTEIPSLKELGFNDFVMPKKSAFP----FKGGETAALERLNYYLFE---SKKVGFYKK 238
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + G ++S K SPWLA G LS R+++ ++KK + E GS+ + + W+
Sbjct: 239 TRNGLVGTDYSTKFSPWLANGSLSARTIYYQIKKY-----------EAEFGSNQS-TYWV 286
Query: 426 MFELLWRDFFR 436
+FEL+WRD+F+
Sbjct: 287 IFELIWRDYFK 297
>gi|75320690|sp|Q5IFN2.1|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
Flags: Precursor
gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri]
Length = 546
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 168/343 (48%), Gaps = 46/343 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
R ++WFRNDLR+ DN + A + V V+PVY FD + S G + G R
Sbjct: 3 RTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGR 62
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAHREVSHDEVKS 235
F +E V DL+ +L+A GSDL+VR GK V+ EL D + EV+ +E +
Sbjct: 63 GKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEM 122
Query: 236 EEKIEAAMKDEG------IEVKYFWGSTLYHLDDLPFK----LGEMPTNYGGFREKVKG- 284
+ +E A ++ ++ WGSTLYH+DD+PF L ++P + FR KV+
Sbjct: 123 DVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESK 182
Query: 285 VEIRKTIEA--LDQLKGLPSRGDVEPGD-IPSLLDLGLSQSAAMSQGGKPAANSM----- 336
++R I A ++L +P+ VE + +P DL + S K + +
Sbjct: 183 CKVRDVIPAPTANELGHVPA--SVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSV 240
Query: 337 ---KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 393
KGGE+ AL R+K + E + + G ++S K++PWLA+GC+SPR +
Sbjct: 241 LDFKGGESNALARVKYYLWESDRLATYFE---TRNGMLGGDYSTKLAPWLALGCVSPRHV 297
Query: 394 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
E+++ + + W++FEL+WRDFF+
Sbjct: 298 VSEIRRYES------------ERVENKSTYWVIFELIWRDFFK 328
>gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus]
Length = 549
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/334 (32%), Positives = 168/334 (50%), Gaps = 42/334 (12%)
Query: 127 IVWFR-NDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWF+ DLR+ D+E L A+ S V V+C D R +G S G + R FL+ESV
Sbjct: 25 VVWFKCTDLRLEDHEPLALAHRNSSHVAHVFCIDDRWFGHSRRGTRRMSAARCRFLLESV 84
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA----VYAHREVSHDEVKSEEKIEA 241
+DL+ L+A+GSDL++R G PE + +A +G+ A VYAH ++ +E +++
Sbjct: 85 ADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEENDVHAAVKS 144
Query: 242 AMK-----------DEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVK-GVEIR 288
A+ G+ V WG+TL+ DLP+ +P + FR+ V+ +IR
Sbjct: 145 ALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFRKAVEPNCKIR 204
Query: 289 KTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS-----MKGGETEA 343
+ + LP+ + + L + + + + G P ++ GGET
Sbjct: 205 SPVPLPSPFRPLPA--GLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLHFIGGETAG 262
Query: 344 LQRLKKFAAEY-QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT 402
L+R++ + E + K ++G + G FS K SPWLA+GCLSPR++ E++K T
Sbjct: 263 LRRVQTYIWEEDHLREYKVTRNG----LLGGGFSSKFSPWLALGCLSPRTIVKEIRKYET 318
Query: 403 SISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
A ND + WL+FELL RDFFR
Sbjct: 319 DRIA----ND--------STYWLIFELLVRDFFR 340
>gi|408491986|ref|YP_006868355.1| cryptochrome, DASH family Cry1-like protein [Psychroflexus torquis
ATCC 700755]
gi|408469261|gb|AFU69605.1| cryptochrome, DASH family Cry1-like protein [Psychroflexus torquis
ATCC 700755]
Length = 436
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 160/318 (50%), Gaps = 29/318 (9%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ +IVWFRNDLR D +SL A +VL VYCFDP + + GF KT YRA FLI
Sbjct: 5 QKITIVWFRNDLRTRDQKSLFDACQSENAVLGVYCFDPSHFETTRYGFKKTEKYRAKFLI 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ESV L NLQ L + P V EL++ +V+ E + +E + E K+++A
Sbjct: 65 ESVEQLSDNLQDLNISLHIAHKHPSEVFKELSERYAITSVFYQTEWTREEKRVEAKVKSA 124
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGL 300
+ + Y L+H +DLP++ ++P Y FR+K K E+R+ + A +
Sbjct: 125 LPNADFIENY--DQFLFHPEDLPYESFQDIPEVYTNFRKKCEKQSEVRQKVPA---PQPR 179
Query: 301 PSRGDVEP-GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QP 358
P+ +E P+L DLGL + P KGGE EA +R++ + + + Q
Sbjct: 180 PTHHLLEERNQAPNLSDLGLENFETDPRSAFP----FKGGENEAWKRIEHYFWDTKKLQY 235
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K S WLA G +S S++ E++ +
Sbjct: 236 YKKTRNG----LLGTDYSSKFSAWLANGSISAVSIYHEVRAFEKQV------------KK 279
Query: 419 GAGSNWLMFELLWRDFFR 436
+ WL+FEL+WRD+F+
Sbjct: 280 NQDTYWLIFELIWRDYFK 297
>gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 551
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 167/341 (48%), Gaps = 42/341 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNT-----ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
R IVWFRNDLR+ DN + +++ V+PVY FD + S G + G R
Sbjct: 7 RTRVIVWFRNDLRLLDNAVVARAAALRGQSDAAEVVPVYVFDETFFKTSKRGLARFGAGR 66
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAHREVSHDEVKS 235
F IE V DL++ L+ GSDL+VR GK E V+ EL D V EV+ +E
Sbjct: 67 GKFTIECVDDLKRALRGVGSDLLVRCGKTEDVITELTLTGANDKTIVLTQTEVTSEETDM 126
Query: 236 EEKIEAAMKDEG------IEVKYFWGSTLYHLDDLPFK----LGEMPTNYGGFREKVKG- 284
+ +E A K+ ++ WGSTLYH DDLP+ L ++P + FR KV+
Sbjct: 127 DRAVERASKERARSGGASASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTPFRNKVESK 186
Query: 285 VEIRKTIEA--LDQLKGLPSR-----GDVEPGDIP-SLLDLGLSQSAAMSQGG-KPAANS 335
+R + A + L +P+ EP D+P + ++ + + G + +
Sbjct: 187 CSVRAVVPAPTANALGSVPASVAGLDWMPEPKDLPFASAEIAPACEKWLKDGADERSVLE 246
Query: 336 MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 395
KGGE++AL R+K + + + + G ++S K++PWLA+GC+SPR +
Sbjct: 247 FKGGESQALARVKYYLWDSDLLATYFE---TRNGMLGGDYSTKLAPWLALGCVSPRYVVS 303
Query: 396 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
E+++ + + + W++FEL+WRDFF+
Sbjct: 304 EIRRYES------------ARVENKSTYWVIFELIWRDFFK 332
>gi|332292004|ref|YP_004430613.1| DASH family cryptochrome [Krokinobacter sp. 4H-3-7-5]
gi|332170090|gb|AEE19345.1| cryptochrome, DASH family [Krokinobacter sp. 4H-3-7-5]
Length = 432
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 157/316 (49%), Gaps = 29/316 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VWFRN+LR DN SL A V+ +Y FDPR + GF KT YRA FLIE+
Sbjct: 3 TALVWFRNNLRTQDNSSLTHAIASGKRVIGLYSFDPRQFQIGDFGFKKTEKYRAQFLIET 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
V +L+KNL L+V PE + +L +Y+ +E + +E + +E +
Sbjct: 63 VQNLKKNLNDLNITLIVTHEHPEVTIPDLIDQHDVSEIYSQKEWTREENEVTIAVEEKIN 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL-DQLKGLPS 302
+ Y L+H +D PF G++P + FR+K E T++ L +++K LPS
Sbjct: 123 NAKHYTHY--DQFLFHPEDNPFNSFGDIPQVFTQFRKK---CEKESTVQRLQEKIKTLPS 177
Query: 303 RGDVEP-GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPK 360
+ ++ IP+L +LGL + P GGE EA RL F + Q K
Sbjct: 178 KNLLDKESSIPNLQELGLDTFTKDHRSAFP----WNGGEDEAWNRLNNYFWNTKKLQYYK 233
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G ++S K+S WLA G +S R ++ E+KK I S
Sbjct: 234 KTRNG----LVGEDYSSKLSAWLANGSISARQIYWEVKKFEKEI------------ISNQ 277
Query: 421 GSNWLMFELLWRDFFR 436
+ WL+FEL+WRD+F+
Sbjct: 278 DTYWLIFELIWRDYFK 293
>gi|313676689|ref|YP_004054685.1| cryptochrome, dash family [Marivirga tractuosa DSM 4126]
gi|312943387|gb|ADR22577.1| cryptochrome, DASH family [Marivirga tractuosa DSM 4126]
Length = 475
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 167/315 (53%), Gaps = 29/315 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R S++WFR +LR+ DN++L S L +Y FD R++ K+ G ++ + +FL +
Sbjct: 6 RKSLIWFRKNLRLKDNQALLEGVQNSEKYLLLYIFDEREWKKNPVGLKRSSDKKLNFLWQ 65
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV DL++N++A+G LV+ G E ++ L+ DA+YA +E +E + E+ +E
Sbjct: 66 SVLDLKQNIEAKGGQLVMLKGDAEDLIQRLSIENKFDALYAPKESGTEEFELEKSVEDFF 125
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR-EKVKGVEIRKTIEALDQLKG-LP 301
+V ++ +TL+H DD+P+ +G++P + FR E K +R E+ + L +P
Sbjct: 126 IKHRAKVDFYAQTTLFHEDDIPWPIGKLPDIFTQFRKENEKQTGVRDLFESPEDLSASIP 185
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY-QAQPPK 360
+ E D+ ++S K N +GGET A +RL+ + + Q + K
Sbjct: 186 VKEVFEFSDLA---------IGSISPEEKSVLN-FQGGETHAWERLEYYFWDSDQLKEYK 235
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G +S K SPWLA+GC+SP+S++ ++K+ +
Sbjct: 236 NTRNG----LLGERYSSKFSPWLALGCISPKSIYYQVKQYE------------KERKKNQ 279
Query: 421 GSNWLMFELLWRDFF 435
+ W++FEL+WRD+F
Sbjct: 280 STYWMIFELIWRDYF 294
>gi|85818697|gb|EAQ39857.1| cryptochrome, DASH family [Dokdonia donghaensis MED134]
Length = 432
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 157/315 (49%), Gaps = 27/315 (8%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VWFRN+LRV DN SL A V+ VY FDPR Y + GF KT YRA FLIE+
Sbjct: 3 TALVWFRNNLRVQDNASLTAAIATGKRVVGVYYFDPRHYEEGDFGFKKTEKYRAKFLIET 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ +L+ NL R L+V KPE + + K+ ++++ +E + +EVK +E A+
Sbjct: 63 IENLKANLDKRNITLLVYNLKPEEHITSVVKSYKVTSLHSQKEWTAEEVKVTNAVERAIP 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ E+ Y L+H DD+PF + E+P + FR+K K ++R + L L
Sbjct: 123 EVSHELVY--DQFLFHPDDIPFNTITEVPKIFTQFRKKCEKESDVRPIFKELTALPQENI 180
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP-PKG 361
V P I +L DLGL + P +GGE A RL + Q K
Sbjct: 181 LTTVTP--ISTLEDLGLDTFVKDHRTAFP----WEGGEDAAWARLNDYFWTTQKLAYYKK 234
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G +S K+S WLA G +S R ++ ++K+ +
Sbjct: 235 TRNG----LIGEGYSSKLSAWLANGSISARQIYWKVKRFEKEV------------KKNQD 278
Query: 422 SNWLMFELLWRDFFR 436
+ WL+FEL+WRD+F+
Sbjct: 279 TYWLIFELIWRDYFK 293
>gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis]
Length = 512
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 168/330 (50%), Gaps = 47/330 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIE 183
A WFR DLR+ D +L+TA +++S+LP+Y FDP + + +G K+ RA FLIE
Sbjct: 9 ARAFWFRTDLRLDDQPALSTACEDALSLLPIYVFDPAKFIDLTLAGARKSSARRARFLIE 68
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ +LR+ L+ RGS L V +G P V+ +L + A A+Y + + +E + E ++E+ M
Sbjct: 69 SLVNLRRRLEDRGSGLAVAIGDPAVVIADLCAS--ASAIYVTQGICSEETQDEARVESKM 126
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPS 302
K + + WG +LY D+ + P + F++K + +IR+ + L +L LP
Sbjct: 127 KAPAL-LSRVWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREPLAELTKLPSLP- 184
Query: 303 RGDVEPGDI-------PSLLDLGL-SQSAAMSQGGKP-AANSMKGGETEALQRLKKFAAE 353
G V D+ P+L +LG S+ ++ P GGE AL RL+K+
Sbjct: 185 -GAVCEPDLSQALRFMPTLAELGFESEEINAAEFDDPRGVLPFSGGEDAALTRLQKWIW- 242
Query: 354 YQAQPPKGNKDGNH--------DSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
D +H + + G +S K SPWLA+GCLSPR ++ E+++
Sbjct: 243 ----------DDDHLREYWMIRNGMKGEGYSSKFSPWLALGCLSPRRVWKEVQRYE---- 288
Query: 406 AASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ + WL+FEL+WRDFF
Sbjct: 289 --------KERVKNKSTYWLVFELMWRDFF 310
>gi|433419586|ref|ZP_20405291.1| DASH family cryptochrome, partial [Haloferax sp. BAB2207]
gi|432199407|gb|ELK55585.1| DASH family cryptochrome, partial [Haloferax sp. BAB2207]
Length = 202
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 107/164 (65%), Gaps = 7/164 (4%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR G+PE+VL E+A + AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVREGRPESVLPEVAATVDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283
E ++D G+E++ FWG TL HLDDLP L ++P Y FR+ V+
Sbjct: 125 ETELRDGGVELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVE 168
>gi|456063890|ref|YP_007502860.1| Deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455441187|gb|AGG34125.1| Deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 418
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 161/312 (51%), Gaps = 37/312 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I WFRNDLR+ DN + A + +LPVY D ++ ++ GF++ GP+R +FL S+
Sbjct: 5 IYWFRNDLRLADNPAFTQACLNADYLLPVYVHDTKE-QETVYGFERQGPHRKAFLRASLD 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA--MK 244
DL+ LQA+GSDL+ GK VL+ L K ADA+Y +++++ E+IE ++
Sbjct: 64 DLKTRLQAQGSDLLEFSGKSAEVLLRLLKDSAADAIYC------EQIEAPEEIEQVRILQ 117
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
++G V +W S++ PF L MP + FR +V+ ++ K + ++ K +PS
Sbjct: 118 EQGANVDEYWQSSMLDPQHFPFDLETMPDVFTAFRREVERAQL-KFAQPINAPKKIPS-- 174
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
+P+ L G S S+ A + GG + A LK++ A K +
Sbjct: 175 ------LPAALPQG---SILPSRAQSVAHPYLLGGASHAQAHLKQYLERRLADSYKETR- 224
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
+ + G ++S K S WL++GC+S R + +L S A ND G+ W
Sbjct: 225 ---NQLIGMDYSSKFSAWLSLGCISARDIAAQLNDYENSYGA----ND--------GTYW 269
Query: 425 LMFELLWRDFFR 436
L FELLWRD+FR
Sbjct: 270 LWFELLWRDYFR 281
>gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
Length = 515
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 164/337 (48%), Gaps = 32/337 (9%)
Query: 106 LSLGPHRP--LDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY 163
L P RP NG + A + WFRNDLRV DN L A + S VL V+CFDP D+
Sbjct: 26 LGSNPARPEGWQAKNGETMTTA-LYWFRNDLRVTDNPGLLAACS-SQRVLTVFCFDPADF 83
Query: 164 GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVY 223
+ G + GPYRA FL ESV LR+ LQ L + G P +L + K G ++
Sbjct: 84 REGDYGIRRMGPYRAGFLRESVLALREQLQGLNISLHIHFGPPGDILPGMIKKYGVTDLH 143
Query: 224 AHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKV 282
RE + DE + + + + G+ V + L+H +DLP+ ++P + GFR+K
Sbjct: 144 LQREWTRDECLALDAVREGLP-PGVTVHEHYQQFLFHPEDLPYDSFDDIPDVFTGFRKKC 202
Query: 283 -KGVEIRKTIEALDQLKGL-PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGE 340
K V +R + + + + GD G +P LG++ A S+ P +GGE
Sbjct: 203 EKHVSVRSPEDTPARREAVFAPAGD---GGLPGWEALGMAPPRADSRSAFP----FRGGE 255
Query: 341 TEALQRLKKFAAEYQ-AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 399
A RL+++ E + K ++G + G +S K SPWLA G LS R ++ E+K+
Sbjct: 256 PAAWDRLQEYFWESRFLSTYKRTRNG----LVGTRYSTKFSPWLANGSLSARQIYREVKR 311
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ + WL+FEL+WRD+F+
Sbjct: 312 YEQEVEKNRD------------TYWLVFELIWRDYFK 336
>gi|328857597|gb|EGG06713.1| hypothetical protein MELLADRAFT_48359 [Melampsora larici-populina
98AG31]
Length = 579
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 174/376 (46%), Gaps = 76/376 (20%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVS-------------VLPVYCFDPR-------- 161
+ +I FRNDLRVHDN + A++ S LP+Y FD R
Sbjct: 3 KSVTIALFRNDLRVHDNPIIFHAHSSSQKGVDKTRVQRPSDYYLPIYVFDERMVELSGLP 62
Query: 162 DYGKSSS-------GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELA 214
Y + S GF +TG +R FL ESV +L+ L+ RGSDLV+R G E V + +
Sbjct: 63 GYQREGSEARTGVCGFWRTGCHRLKFLCESVYELQHQLKQRGSDLVIRFGSIEKVTLSII 122
Query: 215 KA-----IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK--YFWGSTLYHLDDLPFK 267
+A + D + ++E + +E+++E KI+ A+K I V +F +L H +DLPF
Sbjct: 123 QALQDTDVKVDQILINKEYASEEIETEVKIDEALKSFKISVPLLFFHTRSLVHPEDLPFL 182
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEAL----DQLKGLPSRGDVEP--------------G 309
+ P Y FR+ ++ + +K L D+L G+P ++ P
Sbjct: 183 PSKTPDVYTPFRKHIESLPEQKLCRPLLPCPDRLIGMPPLKEIAPQRGNSGSSYDTMKMD 242
Query: 310 DIPSLLDLGLSQSAAMSQGGKPAANSM----------KGGETEALQRLKKFAAEYQAQPP 359
+I L L Q ++ P +S KGGE+E L+R+ + P
Sbjct: 243 NILESLMKPLLQCPDLACPAFPKLSSYNFDDRSAFPYKGGESEGLRRINDYFYTGNPAPV 302
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ KD + + G ++S K SP+LA GCLSPR + EL++ A
Sbjct: 303 RSYKD-TRNGLLGQSYSTKFSPFLAHGCLSPRKIILELREHEKKFGA------------N 349
Query: 420 AGSNWLMFELLWRDFF 435
+ W++FELLWRD+F
Sbjct: 350 KDTYWVLFELLWRDYF 365
>gi|336173299|ref|YP_004580437.1| DASH family cryptochrome [Lacinutrix sp. 5H-3-7-4]
gi|334727871|gb|AEH02009.1| cryptochrome, DASH family [Lacinutrix sp. 5H-3-7-4]
Length = 437
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 167/318 (52%), Gaps = 31/318 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ S+VWF+NDLR++DN +L A NES +V+ +YCFD R + K GF KT +RA FLIE
Sbjct: 7 KTSLVWFKNDLRINDNATLLNAVNESETVIAIYCFDNRYFKKDKFGFKKTEKFRARFLIE 66
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+++DL+ LQA L V E + L G DA+Y +E + +E + ++ +
Sbjct: 67 TITDLKFQLQALNIPLFVYCDYTENSIENLQNTHGFDALYLQKEWTTEENNILDLVKKKL 126
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ +++ + L+H +DL F + +P+ + FR+ + K + +R + + P+
Sbjct: 127 -NPNVKIHEEYNQFLFHPEDLNFNIESLPSVFTEFRKNLEKNILVRTLLPTAN-----PA 180
Query: 303 RGDVEPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQP 358
+ +P+L DLG S +Q P KGGETEA +RL+ F E +
Sbjct: 181 NSSYTFKNETRVPTLKDLGFSDFKIHNQSAFP----FKGGETEAFKRLENYFFQEKKLGF 236
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K+S WLA G +S ++++ ++K+ T
Sbjct: 237 YKKTRNG----LIGTDYSSKLSAWLANGSISAKTIYWKVKEFET------------LHFK 280
Query: 419 GAGSNWLMFELLWRDFFR 436
+ WL+FEL+WRD+F+
Sbjct: 281 NQSTYWLIFELIWRDYFK 298
>gi|390955825|ref|YP_006419583.1| DASH family cryptochrome [Aequorivita sublithincola DSM 14238]
gi|390421811|gb|AFL82568.1| cryptochrome, DASH family [Aequorivita sublithincola DSM 14238]
Length = 474
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 162/317 (51%), Gaps = 24/317 (7%)
Query: 120 AAIRRAS-IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRA 178
AI++A+ ++WF+NDLR+HDNE+L A ++ V+ +YC D R + + GF K RA
Sbjct: 4 VAIKKATALMWFKNDLRLHDNEALCNAIACNLPVIYLYCIDSRIFKSLNLGFRKADANRA 63
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
FL +S+ DL+ L+ G L++ G PE ++ +YA E + +E++ +K
Sbjct: 64 IFLKQSLEDLQIKLEELGGHLIIEYGIPEDIIASYVTNYTVKQIYAEEEYAWEELQMMKK 123
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+E + D + FWG TLYH DD+PF++ ++P +R + E L +
Sbjct: 124 VEKLI-DGTASLTTFWGKTLYHKDDIPFEISKIPLTSKAYRIPTGNQSTVR--EPLKEPS 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
L + +V+ + P LG + + A + GGE+ + RL + ++ +
Sbjct: 181 NLNAYDEVKSTEFPEFKILGFNSLEILE-----ADPYVAGGESAGIDRLHYYT--FETEQ 233
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
G + + S+ G ++S K SP+LA+GC+SPR ++ ++K E
Sbjct: 234 LTGYRWSRNKSL-GMDYSSKFSPYLALGCVSPRFIYQQVKHYE------------EIVKK 280
Query: 419 GAGSNWLMFELLWRDFF 435
+ WL+FEL+WRD+F
Sbjct: 281 NQSTWWLVFELVWRDYF 297
>gi|449016857|dbj|BAM80259.1| probable cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 669
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/361 (29%), Positives = 168/361 (46%), Gaps = 67/361 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSS-SGFDKTGPYRASFLIE 183
+++WFRNDLR+HDNE+L AN S+L VY FD R + GKS GF + G +RA FL E
Sbjct: 105 ALLWFRNDLRLHDNEALRLANRAE-SLLCVYVFDERYFFGKSRFGGFLRIGEHRAYFLRE 163
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE---KIE 240
+ DLR+ L++RG +L+V +G P V+ L + G + +EV+ +E+ +E +
Sbjct: 164 CIVDLRQALRSRGQELIVEIGSPVDVIPRLVQKFGVQHLIFSKEVTEEEIATENALVRTL 223
Query: 241 AAMKDEG-----IEVKYFWGSTLYHLDDLPFKL-------------------------GE 270
A + +G ++ W +TL H++DLP+
Sbjct: 224 AQVAAQGQISAPVQCHAVWNATLVHIEDLPYPFPGKAKDISRRAESPVPKTRGTPAVDRV 283
Query: 271 MPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG-DVEPGDIPSLLDLGLSQSAAMSQG 328
P + FR V + +R+T + + L LP + D L + + A G
Sbjct: 284 FPDTFTTFRRLVERSWTVRETWQCPEVLTLLPDDASNFNTIDWSGALPIEYP-AEATRIG 342
Query: 329 GKP-------------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANF 375
+P A GGET AL RL+ + E Q+ + + + G ++
Sbjct: 343 AEPPKLLLMRPYPDPRACYDFHGGETVALSRLEDWIWETQSL---ASYKETRNGLEGPDY 399
Query: 376 SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S K S +LA GC+SPR +++ ++ + S + WL+FELLWRDFF
Sbjct: 400 SSKFSCFLAHGCISPRLIYNAVRDFERRV------------ESNESTYWLLFELLWRDFF 447
Query: 436 R 436
R
Sbjct: 448 R 448
>gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
MED217]
gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
MED217]
Length = 432
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 160/315 (50%), Gaps = 29/315 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLRV DN SL A+ + + VYCFDPR + + GF KT +RA FLIE+V
Sbjct: 3 NLVWFRNDLRVKDNTSLFKASKNANLLAAVYCFDPRQFQEDQFGFKKTERFRAQFLIETV 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
++LR++L + V +PE +L +L + + D ++ E + +E + K++ +
Sbjct: 63 TELREHLAELNIPIFVYNEQPEDILPQLIERLQIDQLFFQEEWTSEEQEVTRKVKESC-S 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSR 303
++ + L H +DLP+K + +P + +R+K K + IRK + + P
Sbjct: 122 ASVKFTESYDQFLIHPEDLPYKSIEAIPNVFTQWRKKCEKNLNIRKEV----SITEFPQT 177
Query: 304 GDVE-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPKG 361
E IP+L DL L + P KGGE +AL R++ F + K
Sbjct: 178 NFEENSTSIPTLQDLNLESFTPDHRSAFP----FKGGEQQALNRIEDYFWQTRKLAVYKK 233
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G N+S K+S WLA G +S R+++ ++K + +
Sbjct: 234 TRNG----LTGKNYSSKLSAWLANGGISARTIYWKIKAFE------------QEETKNES 277
Query: 422 SNWLMFELLWRDFFR 436
+ WL FEL+WRDFF+
Sbjct: 278 TYWLFFELMWRDFFK 292
>gi|397600433|gb|EJK57652.1| hypothetical protein THAOC_22277 [Thalassiosira oceanica]
Length = 667
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 178/352 (50%), Gaps = 52/352 (14%)
Query: 122 IRRASIVWFRNDLRVHDN----ESLNTANNESVSVLPVYCFDP-RDYG----KSSSGFDK 172
+RR +I WFRNDLR+HDN + ++ E ++LP+Y FD R YG + SG K
Sbjct: 1 MRRLNIHWFRNDLRLHDNPVDLSRHDLSDGEESTLLPIYIFDTSRIYGSEIKSAVSGAIK 60
Query: 173 TGPYRASFLIESVSDLRKNLQAR-GSDLVVRVGKPETVLVELAKA----IGADA------ 221
G RA F IE+V DLR +L+ R G L+V G+PE VL+EL K G A
Sbjct: 61 CGASRAKFTIEAVEDLRLSLEKRLGVCLLVATGRPEDVLLELVKQNVQPRGEQAEQDTSV 120
Query: 222 -VYAHREVSHDEVKSEEKIEAAMK---DEGIEVKY--FWGSTLYHLDDLPFKLG--EMPT 273
+ RE+ H+E++ ++ +EA+++ +G + WGS LY DLPF+ G +PT
Sbjct: 121 NLVCQREICHEELEVDKAVEASLEGFISDGSRFNFEKIWGSLLYEPCDLPFEGGINGIPT 180
Query: 274 NYGGFREKVKG-VEIRKTIEALDQLK---GLPSRG-DVEPGDIPSLLDLGLS-QSAAMSQ 327
+ FR +V+ E+ +EA Q + +RG +P+L LG + Q ++
Sbjct: 181 TFNKFRREVEAKCEVPMPLEAPSQTELQTASVTRGRSYSATSMPTLSGLGYTDQQVESTR 240
Query: 328 GGKPAAN---SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLA 384
P ++ +GGET AL R +++ + + + + G ++S K SPWLA
Sbjct: 241 TVHPNSSLPKGYRGGETFALHRARQWIWDRDMLRTYFD---TRNGLIGEDYSTKFSPWLA 297
Query: 385 MGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
G LSPR + E ++ E+ + + W +FELL RD+FR
Sbjct: 298 CGSLSPRYVALECRRYE------------EARVANKSTYWCVFELLVRDYFR 337
>gi|331227925|ref|XP_003326630.1| hypothetical protein PGTG_07608 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305620|gb|EFP82211.1| hypothetical protein PGTG_07608 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 596
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 172/385 (44%), Gaps = 81/385 (21%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTA-------------NNESVSVLPVYCFDPRDYGK 165
G R +I FRNDLR+HDN L + N S VLP+Y FD R
Sbjct: 2 GVGPRSLTIALFRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIEL 61
Query: 166 SS---------------SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVL 210
S GF +TG +R +FL +SV +L+ L+ GSDL+VR G E
Sbjct: 62 SGLEGYRQHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATT 121
Query: 211 VELAKAI-----GADAVYAHREVSHDEVKSEEKIEAAMKD--EGIEVKYFWGSTLYHLDD 263
+++ + + D VY +EV+ +EV +E+++ + + + + F +L H DD
Sbjct: 122 LKIIEELQRNGFSVDHVYMAKEVAFEEVGTEKRLAKLLGELAHKVPLTLFHSRSLVHPDD 181
Query: 264 LPFKLGEMPTNYGGFREKVKGVEIRKTIEAL----DQLKGLPS------RGDVEPGDIPS 313
LPF + + P Y FR KV+ + + L ++L+ P+ + EPG S
Sbjct: 182 LPFTINKTPDVYTPFRSKVESLPADQLCRPLLPLPEKLQPFPALPETILKAAPEPGYSGS 241
Query: 314 LL--------------------DLGLSQSAAMSQGGKP---AANSMKGGETEALQRLKKF 350
L D+ A +Q KP +A +GGE+EAL+RL +
Sbjct: 242 LCEGQGFDEVFARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESEALRRLDDY 301
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
+ QPP + + + G +S K SP+LA GC+SPR + L W
Sbjct: 302 FFK-GNQPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKIIHSL------------W 348
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ S + W++FE+LWRD+F
Sbjct: 349 DHEAKFGSNKDTYWVLFEILWRDYF 373
>gi|372269296|ref|ZP_09505344.1| cryptochrome-like DNA photolyase [Alteromonas sp. S89]
Length = 434
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 157/318 (49%), Gaps = 30/318 (9%)
Query: 127 IVWFRNDLRVHDNESLNTA---NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+VWF ++LR HDN++L A N V+ +YCFDP+ + GF +TG +RA FL++
Sbjct: 3 LVWFLHNLRSHDNQALTQACASANGDTPVIALYCFDPQFFSTDPFGFPRTGKFRAQFLLQ 62
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ DL++ L L++R G P V+ EL ++ RE + DE ++AA
Sbjct: 63 SLEDLKQQLADLNIPLLIRQGAPAQVIPELVTEHAVTELFLQREWTRDERTVLTSLQAAP 122
Query: 244 KDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKV-KGVEIRKTI--EALDQLKG 299
+ + + + L H DDLPF ++ E+P + FR+ + + + IR + + K
Sbjct: 123 AMDAVHIHTDYDQFLIHPDDLPFAEVAELPEVFTQFRKVIEQQLPIRSPLPTPSPRAAKN 182
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQP 358
L + G IPS+ LGL Q A + P GG + QR+++ F
Sbjct: 183 LTAAGG--SSSIPSIEGLGLEQPKADPRSAFP----FSGGSSAGKQRIEEYFWNSENITR 236
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G +S K+S WLA G LS R ++ ELK+ ++A
Sbjct: 237 YKQTRNG----LIGTEYSSKLSAWLANGSLSAREVYAELKRFEREVTA------------ 280
Query: 419 GAGSNWLMFELLWRDFFR 436
+ WL FELLWRD+F+
Sbjct: 281 NEDTYWLQFELLWRDYFK 298
>gi|298208129|ref|YP_003716308.1| cryptochrome [Croceibacter atlanticus HTCC2559]
gi|83848050|gb|EAP85920.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559]
Length = 421
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 155/311 (49%), Gaps = 41/311 (13%)
Query: 136 VHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQAR 195
++DN LN A + V+ VYCFDPR + ++ GF KTGPYRA FLIE++ +L++ L+ +
Sbjct: 1 MNDNAVLNHAVANNNPVIAVYCFDPRHFTTTTFGFKKTGPYRAQFLIETIKNLKETLKEK 60
Query: 196 GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255
LVV + KPE + L K AVY +E + +E + E ++ ++K + + ++
Sbjct: 61 NITLVVSLTKPEHCISTLVKNHNISAVYYQKEWTQEEQEVEHLVKESIKTSEVTLHSYYD 120
Query: 256 STLYHLDDLPF-KLGEMPTNYGGFREKVKGVEIRKTIEALDQLK-GLPSRGDV-EPGDIP 312
L+H D+PF + E+P Y FR K E + + L L+ LP + E IP
Sbjct: 121 QFLFHPKDIPFSSINEIPKIYTAFR---KACEKKAVVRPLVNLEINLPKTNLLNEDYAIP 177
Query: 313 SLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY- 371
L D GLS+ P KGGETE L+R+ ++ + D NH + Y
Sbjct: 178 KLKDFGLSEFTVHPNTAFP----YKGGETEGLKRINEY-----------HWDTNHIASYK 222
Query: 372 -------GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G+ +S K S WLA G +S R ++ ++K + + W
Sbjct: 223 ETRNGMIGSEYSSKYSAWLANGSISARQIYWDIKDYEKKV------------KKNQSTYW 270
Query: 425 LMFELLWRDFF 435
++FEL+WRD+F
Sbjct: 271 MIFELIWRDYF 281
>gi|409101128|ref|ZP_11221152.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 463
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 159/316 (50%), Gaps = 28/316 (8%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ +VWF+NDLR+HDNE+L A E ++ YC + + K + GF K R FL
Sbjct: 1 MKKRGLVWFKNDLRLHDNEALVMAQQECADLVFCYCIEKNGFEKLALGFRKADIIRFKFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++V DLRKNL + G+ L++ + EL K G VYA E + +E+ +
Sbjct: 61 KQAVLDLRKNLTSLGAHLIIGEASALKTIPELVKQYGITDVYAEEEYASEELNLLRSVTD 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGL 300
+ ++WG TLYH DD+PF + +P +R K RKT + L +
Sbjct: 121 VL--PATTFHFYWGKTLYHKDDIPFNIKNIPLTSKAYRIPASKESTPRKTFDIPTNLNAV 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
V+ P+ G S++ + KP + GGETEAL+RL+ + ++++
Sbjct: 179 KQ---VKTHRFPAYSMYGFSKNE--YEKAKPF---VAGGETEALKRLEYYT--FKSELLT 228
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA-ASKWNDGESGSSG 419
G + + S G ++S K SP+LA+GC+S R +++++ T + S W
Sbjct: 229 GYRWSRNQSD-GLDYSSKFSPYLALGCISAREIYEKVMAYETKVKKNQSTW--------- 278
Query: 420 AGSNWLMFELLWRDFF 435
WL+FEL+WRD+F
Sbjct: 279 ----WLVFELVWRDYF 290
>gi|357466479|ref|XP_003603524.1| Cryptochrome DASH [Medicago truncatula]
gi|355492572|gb|AES73775.1| Cryptochrome DASH [Medicago truncatula]
Length = 323
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 105/183 (57%), Gaps = 17/183 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+L A S ++LPVYC DPR + + GF KTG R FL+E
Sbjct: 97 TAIVWFRNDLRVLDNETLYKAWLSSQTLLPVYCIDPRLFATTYHFGFPKTGALRTQFLLE 156
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L+++ GKPE +L L KA GA VYA +E +E+ E + +
Sbjct: 157 CLDDLRKNLMKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKETCSEELNVERSVNNRL 216
Query: 244 KDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI 287
+ + ++++ WG+T+YH DDLPF + +P Y F + + ++
Sbjct: 217 QQVVVPSNGSAGAATTSNSHPKLQFVWGTTMYHHDDLPFDVPCLPDVYTQFLDFILFPKV 276
Query: 288 RKT 290
KT
Sbjct: 277 IKT 279
>gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens]
Length = 526
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 151/318 (47%), Gaps = 29/318 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKS----SSGFDKTGPYRASFL 181
+IVW R++LRVHDN L A VLPVY D R + + S G K G RA F
Sbjct: 12 TIVWLRDELRVHDNALLAEAAARGGPVLPVYVLDDRVFDAAATSESGGSRKCGAKRARFT 71
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+E++ DLR L ARGS LVV G+P VL L A+G DA + D SEE+ +
Sbjct: 72 LEALDDLRATLGARGSGLVVERGRPADVLAGLCAAVGGDATV----LCSDAACSEERKDE 127
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTI-EALDQLK 298
A + + W TLYH +DL + + +R KV+ G +R + L
Sbjct: 128 AAVAKVAPLAKVWEGTLYHPEDL--RGVAFHDLFTAWRTKVEKAGTRVRGDVFPKAATLP 185
Query: 299 GLPSRGDVE-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
P+ D + +P+L LG + A G+ + GGET AL RL+K+ E
Sbjct: 186 APPAGVDAKLAAPLPTLDALGYDAADAACD-GRGDFFAPAGGETAALARLRKYVFEEDRL 244
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
N D + G +S K++PWL+ GC+SPR +++ A + G
Sbjct: 245 KDYFN---TRDGMIGQGYSTKLAPWLSRGCVSPR-----------AVARACADYERTRGI 290
Query: 418 SGAGSNWLMFELLWRDFF 435
+ W++FEL WRD+F
Sbjct: 291 KNKSTYWVVFELTWRDYF 308
>gi|300778230|ref|ZP_07088088.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
gi|300503740|gb|EFK34880.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
Length = 432
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 148/321 (46%), Gaps = 36/321 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ +I+WF DLR D+ESL E + L V+ FD + + GF K G YRA FL+
Sbjct: 5 QKINILWFTKDLRTRDSESLYNIMQEDLPFLAVFVFDSDLFAQKQFGFRKIGKYRARFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ES+ DL++ L + L+VR K E V E+AK ++ +E + +E + KI
Sbjct: 65 ESIEDLKQRLAKKNIPLLVRQNKTENVFEEIAKEFEIVKIFCQQEWTKEETDLQTKIRKT 124
Query: 243 MKDEGIEVKY-FWGSTLYHLDDLPF----KLGEMPTNYGGFREKV-KGVEIRKTIEALDQ 296
V Y FW + PF L ++P + FR K+ K + IR E +Q
Sbjct: 125 -------VPYAFWEKSYSQFLLHPFFVCKVLDKIPDLFTTFRNKIEKNLLIRPEFET-EQ 176
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ- 355
L S E I +L LG ++ P GGETE L+RL + E Q
Sbjct: 177 LICYKSEIHFESDKI-TLRSLGFEDFDTDARSAFP----FPGGETEGLRRLHSYFPETQH 231
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K ++G + G +S K SPWL+ G LS +++ E+K+
Sbjct: 232 LSRYKETRNG----LVGTEYSSKFSPWLSCGSLSAVTIYHEIKRFEKKF----------- 276
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
S + WL FELLWRDFFR
Sbjct: 277 -GSNESTYWLFFELLWRDFFR 296
>gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
Length = 410
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
L A ++S S+LPVY FDP + + KTG R FL+ESV+ LR + Q G DL+V
Sbjct: 2 LVEAISKSDSILPVYFFDPYYFDPTQFNTVKTGMSRTKFLLESVAALRASFQQLGGDLLV 61
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
GKPE ++ L VY HREV+ +E + K+E + I +++F G TLY+
Sbjct: 62 LYGKPEELMAGLVDQYEISEVYHHREVAPEETQISTKVEDLLWKLKINLRHFIGHTLYNK 121
Query: 262 DDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLS 320
+DLPF + ++P + F++K + ++ + D ++ + + + G +P L DLG
Sbjct: 122 EDLPFPIKDIPDVFAQFKKKTERDAMVKSCFLSPDHIEFVENE---DWGQLPGLKDLGFE 178
Query: 321 QSAAMSQGGKPAANSMKGGETEALQRLKKF----AAEYQAQPPKGNKDGNHDSIYGANFS 376
+ + ++++GGE LQ L AA YQ K + + FS
Sbjct: 179 EETFPGE-----EDALRGGEEAGLQHLSDLLLEGAAVYQKYTAKQSAERE-------AFS 226
Query: 377 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
++S WL++GCLSPR ++ +K+ A SK+ S A N ++ LLWRD++R
Sbjct: 227 SRLSGWLSLGCLSPRMVYWMVKE------AESKFG------SNANFNQMLLGLLWRDYYR 274
>gi|448565168|ref|ZP_21636139.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
gi|445715827|gb|ELZ67580.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
Length = 151
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 7/140 (5%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+HDNE+L A + VLPVYC DPR+YG G FDKTG +RA
Sbjct: 6 SLAWFRRDLRLHDNEALAAACDAD-GVLPVYCLDPREYGDRPFGGSDSFDFDKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES+SDLR +L+ RGSDLVVR G PE+VL ELA + AD V H + +E E +
Sbjct: 65 FRLESLSDLRASLRDRGSDLVVREGTPESVLPELAATVDADFVTVHTRPTPEESSVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLY 259
E ++D+G++++ FWG LY
Sbjct: 125 ERGLRDDGVDLRRFWGCLLY 144
>gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 610
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 156/341 (45%), Gaps = 54/341 (15%)
Query: 129 WFRN-DLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD------------KTGP 175
WFR+ DLR+ DN +L ++ + S +PV+CFD YG + D K GP
Sbjct: 55 WFRHGDLRLLDNPALIHSSKTAESCVPVFCFDDSVYGNDNRTPDTRAPHSNDRGQLKCGP 114
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI----GAD---------AV 222
RA F+++SV DLR++LQ+RGS L V GKP V L A AD +
Sbjct: 115 RRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVDAWPAVPAADTAAPNGSLLTI 174
Query: 223 YAHREVSHDEVKSEEKIEAAMKDE--GIEVKYFWGSTLYHLDDLPF--KLGEMPTNYGGF 278
REV +E + +++ ++ +V+ WGST+Y LDDLPF L MP + F
Sbjct: 175 VCQREVVREENDAVRAVQSVLRRRFPQAKVQQIWGSTMYELDDLPFATDLANMPDTFTPF 234
Query: 279 REKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK 337
R KV K +I + QL P + PS L GL + + G A ++
Sbjct: 235 RNKVEKNCQIGTPLPVPKQLS--------LPENFPSALKQGLEYLPTLKELGYTDAQ-IQ 285
Query: 338 GGETEALQRLKKFAAEYQAQPPKGNKD--GNHDSIYGANFSCKISPWLAMGCLSPRSMFD 395
ET + + F Q KD + + G N+S K SPWLA G +SPR +
Sbjct: 286 QVETHDERGVLHFMVAKQPDSHDCLKDYFETRNGMLGPNYSTKFSPWLAHGNVSPRYVAA 345
Query: 396 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ +K E + W++FELLWRDF +
Sbjct: 346 QCRKYE------------EERVENKSTYWVVFELLWRDFCK 374
>gi|372222172|ref|ZP_09500593.1| cryptochrome-like DNA photolyase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 441
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 158/321 (49%), Gaps = 32/321 (9%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
+++ ++I+WFRN+LR DN++L A+ ++ VY P + K+ GF K G YRA F
Sbjct: 14 SLKDSAIIWFRNNLRTQDNKTLVEASKHK-QLIAVYTISPNLFKKNKYGFTKLGKYRAKF 72
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES+ DL++ L+ L+ +V PE +L EL K + +Y E + +E ++
Sbjct: 73 LLESLRDLKEQLKTYNISLICKVALPEQLLPELIKKYKINTLYLQEEWTQEEEDELTEV- 131
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E +++ F LYH + +PFK ++P + FR+KV+ ++ L+
Sbjct: 132 VKKAPEHLQIVQFKDQFLYHPNAIPFKDYAQIPEVFTNFRKKVEKY------AQVNYLRA 185
Query: 300 LPSRGDVE----PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P+ D E IP L DLG + + P KGG +A +RL + +
Sbjct: 186 TPNTLDKENLIITNAIPELGDLGFDEFETDLRSAFP----FKGGSKKAHERLHYYLWDSN 241
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
A N + + G ++S K+S WLA G +S R +F E+KK +
Sbjct: 242 AI---ANYKETRNGLLGPDYSSKLSAWLANGSISAREVFWEVKKYE------------KE 286
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ + WL+FELLWRD+F+
Sbjct: 287 RTKNQSTYWLIFELLWRDYFK 307
>gi|383449827|ref|YP_005356548.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium indicum
GPTSA100-9]
gi|380501449|emb|CCG52491.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium indicum
GPTSA100-9]
Length = 437
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 151/311 (48%), Gaps = 25/311 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFRN+LR HD N E V+ +YC +P +S G+ K +RA FL+E++
Sbjct: 10 IIWFRNNLRTHDAAFWNHIQKED-EVIALYCLEPEWLKPTSFGWKKMEVFRAQFLVETLR 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL+ L + E+ + D + E + +EV+ E K+ A +
Sbjct: 69 DLQLQLSKNNISFYFFQCQAVQAFEEIYTSFPFDTIITQNEWTQEEVEVENKVRTAFPNV 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
++ Y L LPF L ++P + +R+KV+ + E + + L + D+
Sbjct: 129 SLKTDY--DQFLIEPAQLPFSLNDLPNVFTSYRKKVE--QKWAVNEVIPKANYLFKKIDL 184
Query: 307 -EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+P++ +LG S + P KGGE+EALQ LKK+ E+ Q K KD
Sbjct: 185 PFSSAVPTVEELGYSSLQVDERSAFP----FKGGESEALQHLKKYIWEH--QQIKTYKDT 238
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
++ + G +S K++PWLA G LS R+++ E++K + ND + W+
Sbjct: 239 RNELV-GIQYSTKLAPWLANGSLSVRTVYHEVRKFEQEVLE----ND--------STYWV 285
Query: 426 MFELLWRDFFR 436
+FELLWRDFF+
Sbjct: 286 LFELLWRDFFK 296
>gi|313200806|ref|YP_004039464.1| cryptochrome, dash family [Methylovorus sp. MP688]
gi|312440122|gb|ADQ84228.1| cryptochrome, DASH family [Methylovorus sp. MP688]
Length = 467
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 160/324 (49%), Gaps = 36/324 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSV----LPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
I WFR DLR+HD +L A ++ + LPV+ DP + G + GF + P+R ++L
Sbjct: 29 IFWFRRDLRLHDQVALTWAARQAAHIGSWLLPVFVHDPAESGLTRWGFARMAPHRRAWLT 88
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+V L L+A GSDLV G LV L +A+G + + E++ E E+ + AA
Sbjct: 89 SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALG-NPLLVCEEIAAPE---EQAVVAA 144
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIEALDQLKGL 300
++ G++VK W S+L +++LPF +P + FR ++ V+ + + ++ QL L
Sbjct: 145 LRAAGVKVKTVWQSSLVAVENLPFDPQAVPDTFTTFRHALERGHVQAARPLPSIKQLPPL 204
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS--------MKGGETEALQRLKKFAA 352
PS + IPS + + A S+ A S G E ALQ L+++
Sbjct: 205 PSHALLNA--IPSEVASDGTDHAMASEPWPDDARSAFPLGSSGFDGSEQAALQHLQQYCQ 262
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
K ++G + G ++S K SPWLA G LS R + AA + +
Sbjct: 263 RRLPHSYKSTRNG----LIGVDYSSKWSPWLATGALSARQAW-----------AAIQAFE 307
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
E G++ + + WL FELLWRD FR
Sbjct: 308 AEHGANES-TYWLWFELLWRDHFR 330
>gi|365092849|ref|ZP_09329929.1| DNA photolyase, FAD-binding protein [Acidovorax sp. NO-1]
gi|363415035|gb|EHL22170.1| DNA photolyase, FAD-binding protein [Acidovorax sp. NO-1]
Length = 438
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 159/329 (48%), Gaps = 50/329 (15%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WFRNDLR+HD +L+ A + + +LPV C D + GF + G +R + ++
Sbjct: 5 LFWFRNDLRLHDQPALHAALASGATHLLPVVCLPAAD-EPTPWGFARVGVHRRAVAAAAL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMK 244
L +L A G+ L++ P T L +LA+A+GA V V D E+ E AA++
Sbjct: 64 RGLSASLSALGNPLLICQAPPVTALPQLAQAVGATTV-----VCEDIAVPYEQAEVAALR 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G++V+ W S+L H D+P+ ++P + FR+KV+ I + LP
Sbjct: 119 AAGLQVRTVWHSSLLHPADMPWPASDLPGVFTSFRQKVERAGITPAAPLPAPTRLLP--- 175
Query: 305 DVEPGDIPS--LLDLGLSQSA------AMSQG---------GKPAANSMKGGETEALQRL 347
P D+P+ L +G + A A SQG G PA + G E AL L
Sbjct: 176 ---PPDVPAPVLQAVGAKEGAVRIQQPAPSQGSDVRSSFPYGTPACD---GSEAAALAHL 229
Query: 348 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
++ A K ++G + G ++S K SPWLA G LSPR ++ +LK A
Sbjct: 230 AQYLARKLPHSYKATRNG----LTGLDYSSKFSPWLATGALSPRQIYADLKTFECDHGA- 284
Query: 408 SKWNDGESGSSGAGSNWLMFELLWRDFFR 436
ND G+ WL FELLWRD+FR
Sbjct: 285 ---ND--------GTYWLWFELLWRDYFR 302
>gi|338996753|ref|ZP_08635463.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
gi|338766394|gb|EGP21316.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
Length = 473
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 154/317 (48%), Gaps = 35/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRASFLIES 184
IVW +++LR+ DN L+ + +L +Y D R + SS+G D + GP R FL +S
Sbjct: 7 IVWLQDNLRIADNPLLHF-DAPPEQLLCLYVLDQRWFEPSSAGDDTPRLGPARLRFLWQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ +LR L RGSDL+VR+G P ++++E A + A V R +H + + I +
Sbjct: 66 LMELRGELLQRGSDLLVRIGDPASIVLETADMLSAREV---RVAAHSGYEESQHIARVAE 122
Query: 245 DEGIEVKYFWGSTLYHL--DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG--- 299
++F + Y + DDLPF L E+P N+ FR +V+ K E L
Sbjct: 123 QLPPACQFFCADSGYLIAADDLPFALSELPPNFSAFRRRVE-----KHCEFLAPQPAPIT 177
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQP 358
LP + P P L + + +A+ Q GGE+ A RL+++ A+
Sbjct: 178 LPPWPESAPRGFPPL--KAVCEESAVWQPDNRQGFVFVGGESAASDRLQQYLWRQNGAES 235
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + GANFS + SPWLA GCLS R E+K N S
Sbjct: 236 YKKTRNG----LLGANFSTRFSPWLARGCLSARQACQEVK------------NWEAVHGS 279
Query: 419 GAGSNWLMFELLWRDFF 435
S W++FELLWRD+F
Sbjct: 280 CESSYWIIFELLWRDYF 296
>gi|358059279|dbj|GAA94967.1| hypothetical protein E5Q_01622 [Mixia osmundae IAM 14324]
Length = 594
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 166/361 (45%), Gaps = 62/361 (17%)
Query: 123 RRASIVWFRNDLRVHDNESLN------TANNESVSVLPVYCFDPR--------DYGKSS- 167
R +I R DLR+HDN + TA+N + VLP+Y FD R DY +
Sbjct: 4 RSIAIALLRCDLRIHDNAIFHATHYGPTASNIT-HVLPLYVFDERQIELSGLPDYKRKGP 62
Query: 168 ------SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI---- 217
GF ++G ++A FL E+V D++K L++ GSDL +R G PE + KA+
Sbjct: 63 PAKTRVCGFWRSGAFKAKFLTEAVFDVQKRLRSAGSDLAIRFGVPEDATISFIKALQKNG 122
Query: 218 -GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYG 276
+ +Y RE+ +E+ SE ++ G++V + L H DDLPFK+ + P +
Sbjct: 123 DTVEGIYLQRELCVEEIASENRLMKGASALGVKVHMYDTKALIHPDDLPFKVDKTPDVFT 182
Query: 277 GFREKVKGVE---IRKTIEALDQLKGLP-----------SRGDVEPGDIPSLLDLGLS-- 320
FR++V+G+ R ++ + K P D + ++ + + LS
Sbjct: 183 PFRKRVEGLNDKMSRPILKTPNHFKPYPEPLPDSDAYGSQLTDRKREEVLAYILKPLSGT 242
Query: 321 --QSAAMSQGGKP----AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN 374
M+Q P +A +GGET AL+RL + + A PP + + G +
Sbjct: 243 EQHQNIMAQKKDPSLIKSAFPYEGGETAALERLDYYFFQ-GAPPPAARYKQTRNQLLGHS 301
Query: 375 FSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
+S K+SP+L +G +SPR + + + W+ FELLWRD+
Sbjct: 302 YSTKLSPFLCIGSISPRLVMKAVDDHEAKFELTQD------------TYWVRFELLWRDY 349
Query: 435 F 435
F
Sbjct: 350 F 350
>gi|343427433|emb|CBQ70960.1| related to Deoxyribodipyrimidine photolyase [Sporisorium reilianum
SRZ2]
Length = 596
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 180/381 (47%), Gaps = 80/381 (20%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNES----------VSVLPVYCFDPRDYGKS------ 166
R I RNDLR+HD+ L+ ++ S VLPVY +D R S
Sbjct: 3 RNILIAVLRNDLRLHDHPILHLCSDPSPASTPFKQPITHVLPVYVWDQRHVEISGFPSLT 62
Query: 167 ------------------SSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET 208
+ G +TG +RA F+ ESV DLR L+ GSDL + G PE+
Sbjct: 63 KATSSGGGGGATQLAKTRALGLWRTGVHRARFVNESVFDLRARLRGVGSDLAMYAGTPES 122
Query: 209 VLVELAKAIGA-----DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
V+ L I A +AVY RE++ +EV + +++ ++ G+++K G +L H D
Sbjct: 123 VVPALIHKIRAGGDSVEAVYLGREINTEEVNVQRRLQGVLEGMGVQMKMLEGKSLIHSRD 182
Query: 264 LPFKLGEMPTNYGGFREKVKG---------------------VEIRKTIEALDQLKGLPS 302
L F + ++P + FR++V+G V+ + + AL KGL +
Sbjct: 183 LGFAVSQLPDVFTHFRKQVEGDDMFRAPLPAPSRLKPFPRVDVDDAEGVYALSAAKGLDT 242
Query: 303 RGDVEPGDIPSLLD---LGLSQ-SAAMSQGGKP----AANSMKGGETEALQRLKKFAAEY 354
+ VE + LL LG + + + +G P +A KGGETEAL RL+ +
Sbjct: 243 KDAVEKCLLQPLLAHPVLGHKELLSKVLKGNTPEVPHSAFPYKGGETEALARLEHYFTGA 302
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
++ P K+ + + GA++S K + LA G LSPR + + AT + D
Sbjct: 303 KSSPGASYKE-TRNQMLGADYSTKFAAALAHGLLSPRL----IAQKATEL-------DAT 350
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
+G++ G W++FELLWRD+F
Sbjct: 351 TGTTKGGGYWILFELLWRDYF 371
>gi|333898405|ref|YP_004472278.1| DASH family cryptochrome [Pseudomonas fulva 12-X]
gi|333113670|gb|AEF20184.1| cryptochrome, DASH family [Pseudomonas fulva 12-X]
Length = 472
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 159/316 (50%), Gaps = 31/316 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WF+ DLR+ D+ +L A S +LP+Y DP G + G +RA FL+ES+
Sbjct: 3 ALLWFKQDLRLDDHPALQAAL-ASNCLLPLYVLDPALLQFDEFGSRRIGVHRARFLLESL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK-IEAAMK 244
+ L L+ RGS L+V GKPE V+ +L V ++ DE+ +E+ + A ++
Sbjct: 62 TALDSALRQRGSKLLVVSGKPEEVIAQLVGQFDMRQV-----ITLDEIAPQERAVIARVR 116
Query: 245 DE--GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE-IRKTIEALDQLKGLP 301
D + ++ + L+ +LP L ++PT Y FR + + + + A DQL LP
Sbjct: 117 DALGPVPLRTAQSNGLFSEAELPCPLDQLPTVYSQFRTLIDARQYVFQPQSAPDQLPPLP 176
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQPPK 360
D+ +P+ LGL + ++ P+A GGET AL RL+ + + Q + K
Sbjct: 177 EGLDINAYGLPTQSQLGLGDALSLV----PSAFPFSGGETAALARLRDYLWDSQNVRTYK 232
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G+ +S K SPWLA G LSPR EL++ + A
Sbjct: 233 QTRNG----MIGSEYSSKFSPWLANGSLSPRRAAAELRRHESLYGA------------NE 276
Query: 421 GSNWLMFELLWRDFFR 436
+ WL ELLWR+FFR
Sbjct: 277 STYWLWAELLWREFFR 292
>gi|383142798|gb|AFG52792.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
Length = 119
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 88/121 (72%), Gaps = 6/121 (4%)
Query: 68 VPTQASTLTHISLSASSTLSPSKISFKST-LSANPLQSPLSLGPHRPLDPNNGAAIRRAS 126
+PTQAST H+ ++ P+ K+ +SA P L DP+N AA+R+A+
Sbjct: 4 LPTQASTALHVPVT-----PPAASHTKAAGVSAFPDYYRLRQSGRDAGDPSNAAAMRKAA 58
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLRVHDNE+L AN E++SVLPVYCFDPRDYGKSSSGFDKTGP+RA+FL+E V+
Sbjct: 59 IVWFRNDLRVHDNEALTNANKEALSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLECVA 118
Query: 187 D 187
+
Sbjct: 119 N 119
>gi|309779656|ref|ZP_07674415.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
gi|349616586|ref|ZP_08895723.1| DASH family cryptochrome [Ralstonia sp. 5_2_56FAA]
gi|308921597|gb|EFP67235.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
gi|348612231|gb|EGY61853.1| DASH family cryptochrome [Ralstonia sp. 5_2_56FAA]
Length = 476
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 159/331 (48%), Gaps = 39/331 (11%)
Query: 118 NGAAIRRA---SIVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDY-GKSSSGFDK 172
G A R A + WFR+DLR+HD +L A S ++PVYC DY ++ GF +
Sbjct: 36 QGTAWRTALNTVLFWFRSDLRLHDQPALRAACETGASHLVPVYCHA--DYEAQTPWGFAR 93
Query: 173 TGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE 232
G +R + L ++ DL + L G+ LV G P VL LA+A+GA V V D
Sbjct: 94 VGVHRRAVLAAALRDLARQLADLGTRLVECCGPPGKVLPALARAVGASTV-----VCEDI 148
Query: 233 VKSEEKIEAA-MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT- 290
E+ E A ++ G++V+ W S+L LP+ + +P + FR+ ++ I +
Sbjct: 149 AAPYEQAEVAELRSAGLQVQTVWQSSLIDPLCLPWPVQSLPAVFTTFRQALERARIAPST 208
Query: 291 -IEALDQLKGLPSRGDVEPG-DIPSLL---DLGLSQSAAMSQGGKPAANSMKGGETEALQ 345
+ +L PS + PG P+ + L A+ G GGET L+
Sbjct: 209 PLSPPTRLPPWPSGVIIPPGLRAPAYVANQTLSTDSRASFPYG----TPEFDGGETAGLR 264
Query: 346 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
L ++ + Q P K +++ G +FS K SPWLA G LSPR + EL++ S
Sbjct: 265 HLAQY---LERQLPHTYKR-TRNALAGVDFSSKWSPWLATGALSPRRVISELQQFEQS-- 318
Query: 406 AASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
G+S GS WL FELLWRD+FR
Sbjct: 319 ------HGQSD----GSYWLWFELLWRDYFR 339
>gi|397601068|gb|EJK57807.1| hypothetical protein THAOC_22117 [Thalassiosira oceanica]
Length = 605
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 176/368 (47%), Gaps = 69/368 (18%)
Query: 123 RRASIVWFRN-DLRVHDNESLNTANNESV--------------------SVLPVYCFDP- 160
R +I WFR DLR+HDN +L + + S+ ++LPV+ FD
Sbjct: 11 RPVNIHWFRQTDLRLHDNPALRRSVDLSLGKSKNPVVGAAVSESPPHRGNILPVFVFDTS 70
Query: 161 RDYG---KSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI 217
R YG +S G K RA F++++VSDLR NL+ RGS L++ VGKPE V+ ELAK +
Sbjct: 71 RIYGSNTRSELGSLKCSARRAQFVLQAVSDLRSNLEKRGSGLIIGVGKPEDVIAELAKGV 130
Query: 218 ------GADA-VYAHREVSHDEVKSEE----KIEAAM-KDEGIEVKYFWGSTLYHLDDLP 265
GA + EV +E+ +E+ K+ AM K + + WG T+Y + LP
Sbjct: 131 LTQSSNGAKLNIVCQEEVCSEELATEKAMRSKLARAMNKGSKFDFETVWGGTMYDPETLP 190
Query: 266 FKLG--EMPTNYGGFREKV-KGVEIRKTIEA-LDQLKGLP---------SRGDVEPGDIP 312
F G +P + FR KV K I + D+ +P S+ +P
Sbjct: 191 FDGGVNGIPDTFTPFRNKVEKACAIGNPLPVPSDEELAMPKDAHTIVKESKCHASLDYMP 250
Query: 313 SLLDLGLS----QSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHD 368
+L DL S + A + +GGET AL R+K + + KG D +
Sbjct: 251 TLADLQYSKEDIEEAELVDIRSALPAGYRGGETFALARVKDYI--WDRDLLKGYFD-TRN 307
Query: 369 SIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 428
+ G+++S K +PWLA+G +SPR + E ++ E+ + + W++FE
Sbjct: 308 GMIGSDYSTKFAPWLALGNVSPRYIARECRRYE------------ETRVANKSTYWVVFE 355
Query: 429 LLWRDFFR 436
LLWRD+F+
Sbjct: 356 LLWRDYFK 363
>gi|388854790|emb|CCF51683.1| related to Deoxyribodipyrimidine photolyase [Ustilago hordei]
Length = 599
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 179/382 (46%), Gaps = 81/382 (21%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVS----------VLPVYCFDPRDY--------- 163
R I RNDLR+HD+ L+ ++ + S VLPVY FD R
Sbjct: 3 RNILIALLRNDLRLHDHPILHLCSDPTPSNAQFQQPVTHVLPVYVFDQRHIELSGFPSLI 62
Query: 164 -------GKSSSGFDKT--------GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET 208
GK S+ F KT G +R + +S+ DL+++L++ GSDL + G PE
Sbjct: 63 KADRASGGKGSTQFAKTRQLGLWRTGVHRTKLINQSLFDLKQSLRSIGSDLSIFAGTPEA 122
Query: 209 VLVELAKAI-----GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
V+ L K I +AVY REV+ +EV +++++ + +K F G +L H D
Sbjct: 123 VVPGLIKGIRDSGDTVEAVYLGREVNTEEVDVQKRLDTLLGQLQCPIKLFEGKSLIHSTD 182
Query: 264 LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRGDVEPGDIPSLLDLG---- 318
LPF + ++P + FR++V+ ++ R+ ++A +LK P DV D + L
Sbjct: 183 LPFPVEQLPDVFTHFRKQVERPDMFREPVQAPSKLKPFPK--DVSIPDSAGVFSLSTKKE 240
Query: 319 ----------------------LSQSAAMSQGGKPAANS---MKGGETEALQRLKKFAAE 353
LS+ S G A+S KGGETEAL++L + A
Sbjct: 241 EEVEKHLLKPLIEQPALAHNELLSKVFNQSTGQVNVAHSAFPYKGGETEALKQLDYYFAG 300
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ P K+ + + GA +S K + LA G LSPR + + A+ + A+ G
Sbjct: 301 GKRSPGASYKE-TRNQMLGAGYSTKFAAALAHGLLSPRL----IAQKASELDQAT----G 351
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
+ + G G W++FELLWRD+F
Sbjct: 352 TANAKGGGY-WIIFELLWRDYF 372
>gi|443895003|dbj|GAC72349.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 610
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 174/384 (45%), Gaps = 83/384 (21%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNES----------VSVLPVYCFDPRD---------- 162
R I RNDLR+HD+ + + VLPVY +D R
Sbjct: 3 RNVLIAVLRNDLRLHDHPIFHLCAEPTPASAAFKKPVTHVLPVYVWDQRHVEVSGFPNLE 62
Query: 163 -------------YGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET 208
+ K+ G +TG +R F+ ESV DLR L+A GSDL + G PE+
Sbjct: 63 KAGKQGGGKGSSQFAKTRELGIWRTGIHRTKFINESVFDLRDRLRAVGSDLAMFAGTPES 122
Query: 209 VLVELAKAI-----GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
V+ L K+I +AVY RE++ +EV + +++A + D K G +L H D
Sbjct: 123 VVPSLIKSIRDKGDTVEAVYLGREINTEEVNVQRRLDAILADLQCPFKLLEGKSLIHSRD 182
Query: 264 LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLK----------------------GL 300
L F + ++P + FR++V+ ++ R+ + A D+LK GL
Sbjct: 183 LGFPVKQLPDVFTHFRKQVESPDMFREPVPAPDKLKPFAEVQVDDAPGCFGLSSKSAQGL 242
Query: 301 PSRGDVEPGDIPSLLD---------LGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
+ VE + LLD L S+ + +A +GGETEAL+RL+ +
Sbjct: 243 DRKETVEKHLVQPLLDEPVLGHKELLSKVASSPATFDVPHSAFPYRGGETEALKRLEHYF 302
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
++ P K+ + + GA++S K + LA G LSPR + + A +
Sbjct: 303 GGAKSSPAAHYKE-TRNEMLGADYSTKFAAALAHGLLSPRL----IAQRAAEL------- 350
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
D +G++ G W++FELLWRD+F
Sbjct: 351 DASTGNTKGGGYWILFELLWRDYF 374
>gi|71023669|ref|XP_762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
gi|46101498|gb|EAK86731.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
Length = 623
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 175/384 (45%), Gaps = 77/384 (20%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVS----------VLPVYCFDPR----------- 161
R I RNDLR+HD+ L+ + + S VLPVY FD R
Sbjct: 3 RNILIALLRNDLRLHDHPILHVCSEPTPSTANFTQPITHVLPVYVFDQRHVEVSGFPRLE 62
Query: 162 ------------DYGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET 208
+Y K+ G +TG +R F+ ESV DLR L+ GSDL + G PE+
Sbjct: 63 KARKDGGGKGSGEYAKTRELGLWRTGIHRIKFINESVFDLRDRLRRLGSDLAMFAGTPES 122
Query: 209 VLVELAKAIGA-----DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
V+ L I A +AVY RE++ +EV +++++ + D + F +L H D
Sbjct: 123 VIASLIHQIRAHGDTVEAVYLSREINTEEVNIQKRLQRMLSDVQCRMHMFETKSLIHSRD 182
Query: 264 LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLK----------------------GL 300
L F + ++P + FR++V+ I R + + D+LK GL
Sbjct: 183 LGFPVSKLPDVFTHFRKQVERNRIWRAPLASPDRLKPFAEVPVEDAAGVYSLSANKQHGL 242
Query: 301 PSRGDVEPGDIPSLLD---LGLSQSAA--MSQGGK----PAANSMKGGETEALQRLKKFA 351
+ VE + LLD L ++ A M + G+ +A +GGETEAL RL +
Sbjct: 243 DRKNAVEKCLLQPLLDNPVLAHNELLARVMCKRGQVDVAHSAFPYRGGETEALARLDHYF 302
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
+ P K + + G ++S K LA+G LSPR + + AT + A+ +
Sbjct: 303 DRSDSCPAASYKQ-TRNQMLGTDYSTKFGAALALGLLSPRL----IAQKATELDNATH-D 356
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
+ S+ G W++FELLWRD+F
Sbjct: 357 ATHNASNKGGGYWIIFELLWRDYF 380
>gi|361066937|gb|AEW07780.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142788|gb|AFG52782.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142789|gb|AFG52783.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142790|gb|AFG52784.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142791|gb|AFG52785.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142792|gb|AFG52786.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142793|gb|AFG52787.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142794|gb|AFG52788.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142795|gb|AFG52789.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142796|gb|AFG52790.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142797|gb|AFG52791.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142799|gb|AFG52793.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142800|gb|AFG52794.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142801|gb|AFG52795.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142803|gb|AFG52797.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142804|gb|AFG52798.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142805|gb|AFG52799.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
Length = 119
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 87/121 (71%), Gaps = 6/121 (4%)
Query: 68 VPTQASTLTHISLSASSTLSPSKISFKST-LSANPLQSPLSLGPHRPLDPNNGAAIRRAS 126
+PTQAST + ++ P+ K+ +SA P L DP+N AA+R+A+
Sbjct: 4 LPTQASTALQVPVT-----PPAASHTKAAGVSAFPDYYRLRQSGRDAGDPSNAAAMRKAA 58
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLRVHDNE+L AN E++SVLPVYCFDPRDYGKSSSGFDKTGP+RA+FL+E V+
Sbjct: 59 IVWFRNDLRVHDNEALTNANKEALSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLECVA 118
Query: 187 D 187
+
Sbjct: 119 N 119
>gi|383142802|gb|AFG52796.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
Length = 119
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 87/121 (71%), Gaps = 6/121 (4%)
Query: 68 VPTQASTLTHISLSASSTLSPSKISFKST-LSANPLQSPLSLGPHRPLDPNNGAAIRRAS 126
+PTQAST + ++ P+ K+ +SA P L DP+N AA+R+A+
Sbjct: 4 LPTQASTALQVPVT-----PPAASHTKAAGVSAFPDYYRLRQSGRDAGDPSNAAAMRKAA 58
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLRVHDNE+L AN E++S+LPVYCFDPRDYGKSSSGFDKTGP+RA+FL+E V+
Sbjct: 59 IVWFRNDLRVHDNEALTNANKEALSILPVYCFDPRDYGKSSSGFDKTGPFRATFLLECVA 118
Query: 187 D 187
+
Sbjct: 119 N 119
>gi|449015358|dbj|BAM78760.1| cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 598
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 169/359 (47%), Gaps = 70/359 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSG----FDKTGPYRASFL 181
+VWFRNDLRV D+E+L TA E ++PVY FD R G + F K RA FL
Sbjct: 5 LVWFRNDLRVRDHEALLTACLEHAGRIIPVYVFDKRQVGPHARTRLGQFSKCSTPRAQFL 64
Query: 182 IESVSDLRKNLQA--RGSDLVV-RVGKPETVLVELA------KAIGADAVYAHREVSHDE 232
+E+V DL L+ RG L+V + PE V+ +L K + AVY HREV +E
Sbjct: 65 VEAVQDLANTLRTHYRGMQLLVYKNALPENVIPKLIAELSTEKQVHVGAVYYHREVCSEE 124
Query: 233 VKSEEKIEAAM-----KDE--GIEVKYFWG-STLYHLDDLP--FKLGEMPTNYGGFREKV 282
E+ + AA+ + E + ++ G STLYH DDLP +G MP + +R+ V
Sbjct: 125 RAVEDALRAALCALNQRGELPAVTLRALDGSSTLYHADDLPSGASVGNMPPVFTSWRKLV 184
Query: 283 -KGVEIRKTIEALD--QLKGLPSRGDVEPGDIPSLLDLGLSQSA---------------- 323
KG IR + D +++ LP +P IP+ + +
Sbjct: 185 EKGARIRAPLPMPDPAKVQPLPLSLGCDP--IPTCAREVIGDNCEQARLRHRVPWTLPDD 242
Query: 324 AMSQGGKPAANSMKGGETEALQRLKKFA------AEYQAQPPKGNKDGNHDSIYGANFSC 377
A S+ A +GGE+ A +R++ + A Y+A + + G +S
Sbjct: 243 ATSRVDPRHACPFRGGESAAQERVQAYTFGTDAIARYKA---------TRNGLLGTEYST 293
Query: 378 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
K SP+LA+G ++PR ++ L++ T G + W++FEL WRDFFR
Sbjct: 294 KWSPYLALGNVTPRQLYAVLRRYETE----------RPEKKGISTYWVLFELEWRDFFR 342
>gi|409124205|ref|ZP_11223600.1| DASH family cryptochrome [Gillisia sp. CBA3202]
Length = 465
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 26/313 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VWF+NDLR+HDNE+L A + ++ YC + + GF K R FL E
Sbjct: 2 KRGLVWFKNDLRLHDNEALCEAISNCDELIFCYCLEEILFQNLDLGFRKADINRFKFLEE 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV++L+ L+ G L++ + + + A+Y E + +E+ +E +
Sbjct: 62 SVTNLQTKLEKLGGHLLISTKSAKDFIPRIVAEHNITAIYGEMEYAPEELALTGNVEKML 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
D + ++WG TLYH+DD+PF + ++P +R V E L L +
Sbjct: 122 PD--VTFNFYWGKTLYHIDDIPFSIADIPLTSKAYRIPVSQ-ESNPRASYLSP-SYLNAD 177
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
D+ P G ++ + + A ++GGE L+RL + ++ + G +
Sbjct: 178 ADILSTKFPPYSLYGFTR-----EEYEMANTFVEGGEDNGLKRLYHYT--FETELLTGYR 230
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA-ASKWNDGESGSSGAGS 422
+ S+ G ++S K SP+LA+GC+SPR ++ +K + S W
Sbjct: 231 WTRNRSL-GIDYSSKFSPYLALGCISPREIYRTVKHYEKVVKKNQSTW------------ 277
Query: 423 NWLMFELLWRDFF 435
W++FEL+WRD+F
Sbjct: 278 -WIVFELVWRDYF 289
>gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T]
gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T]
Length = 515
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 160/354 (45%), Gaps = 64/354 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I WFRNDLRV DN +L A + +LPVYC DP + GF + GP+R +FL ++
Sbjct: 7 IFWFRNDLRVGDNLALVEACASAGRLLPVYCHDPSADAPTRWGFVRRGPHRRAFLEAALG 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL L+ARGS L+ G P VL LA+A+GA V + +E E+++ AA++
Sbjct: 67 DLDAALRARGSALLQLNGAPRAVLPALAEAVGAAVVVCEAIAAPEE---EDEL-AALRAA 122
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV--------------------- 285
G++VK W STL LPF +P + FR+ V+
Sbjct: 123 GLKVKAIWQSTLLDPAALPFAAARLPKVFTAFRQAVESAGLQPPAPLPAPRTLPPWPPLD 182
Query: 286 -EIRKTIEALDQLKGL--------------PSRGDVEPGDIPSLLDLGLSQSAAMS---- 326
R++ + D G P EPG+ G S AA +
Sbjct: 183 RPTRRSDASRDLRAGRSPGVAGRDPCAGRSPGVERAEPGNRDLRRSYGGSCGAADALTVE 242
Query: 327 ---QGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPW 382
Q P + GGE AL L ++ A + + K ++G + G +FS K SPW
Sbjct: 243 IGEQASFPWWQPAFAGGERAALAHLARYFAGDRPRHYKATRNG----LSGVDFSSKFSPW 298
Query: 383 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
LA G LS R L++ ++ E G S GS WL FELLWRD+FR
Sbjct: 299 LAQGALSARVALAALRR-----------HEIEQGPSD-GSYWLWFELLWRDYFR 340
>gi|388851718|emb|CCF54714.1| related to Deoxyribodipyrimidine photo-lyase [Ustilago hordei]
Length = 896
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 116/415 (27%), Positives = 174/415 (41%), Gaps = 112/415 (26%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTAN--------------------NESV------SVLP 154
A R I R DLR+HDN + A+ NE++ +LP
Sbjct: 25 ADRSVLICLLRLDLRIHDNPLFHYAHQTPKPILSTVEKTVDLSKLENEALLGSTADYLLP 84
Query: 155 VYCFDPRDYGKSS---------------SGFDKTGPYRASFLIESVSDLRKNLQARGSDL 199
V+ FD R+ S GF KTG +R F+ ESV D+R L+ GSDL
Sbjct: 85 VFVFDEREMELSGLPGFQRKGPEARTKVYGFWKTGGFRTRFISESVYDVRSRLRNVGSDL 144
Query: 200 VVRVGKPETVLVELAKAIGAD-----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254
++R G PE V+ L +A AD V+ +E+++ E+ E I ++ + ++ +
Sbjct: 145 LIRFGIPEDVIYNLVQAFQADGTHVEGVWMQKEMTYPEINVENAIVEKLQGSSVPFRFVY 204
Query: 255 GSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIE-------------------A 293
G TL H DLPF E P + FR+KV+ G + + ++ A
Sbjct: 205 GKTLIHPSDLPFDSSETPDVFTPFRKKVEALGPNMVRAVKQPPAKFKPFPPVVPKTSDYA 264
Query: 294 LD-----QLKGLPSR---------GDVEPGDI---------PSLLDLGLSQSAAMSQGGK 330
LD + GL R G+V DI S L L SA + Q
Sbjct: 265 LDVSYEVDVDGLAPRASETKAKQEGEVSFHDILRFLLAPLNDSQLPPTLEASALLQQRHP 324
Query: 331 PAANSMKGGETEALQRLKKFAAEYQAQ----------PPKGNKDGNHDSIYGANFSCKIS 380
+A ++GGE+ AL RL + ++ PP +++ G +S K+S
Sbjct: 325 ASAFPLRGGESSALDRLDWYFVRGKSADSSRWGKADPPPVARYKQTRNNLIGHAYSSKMS 384
Query: 381 PWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
P+LA G +SPR +++ L T GE + W+ FELLWRD+F
Sbjct: 385 PFLAYGSISPRQIWEALDDHETKF--------GED----QNTYWVRFELLWRDYF 427
>gi|407939958|ref|YP_006855599.1| DNA photolyase, FAD-binding protein [Acidovorax sp. KKS102]
gi|407897752|gb|AFU46961.1| DNA photolyase, FAD-binding protein [Acidovorax sp. KKS102]
Length = 438
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 153/326 (46%), Gaps = 44/326 (13%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WFR+DLR+HD +L A + + +LPV C D + GF + +R +F ++
Sbjct: 5 LFWFRSDLRLHDQPALRAALTSGATHLLPVVCLPAPD-ESTPWGFARVCAHRRAFTAAAL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMK 244
L + ++A G+ L++ P T L++LAKA+GA V V D E+ + AA++
Sbjct: 64 RGLHQRMRALGNPLLICQAPPATALLQLAKAVGATTV-----VCEDIAAPYEQAQVAALR 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G++V+ W S+L +P+ + ++P + FR+KV+ I + +
Sbjct: 119 AAGLQVRTVWQSSLLPPSRMPWPVDQLPGVFTSFRQKVERAGITPAVPLPAPAR------ 172
Query: 305 DVEPGDIP--SLLDLGLSQSAAMSQGGKPAANS------------MKGGETEALQRLKKF 350
+ P D+P L +G Q A Q P S G E AL L ++
Sbjct: 173 LLPPPDVPVSVLQAVGAEQGAEAIQLPAPPQGSDARSSFPYGTPGCDGSEVAALGHLAQY 232
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A + P KD + + G ++S K SPWLA G LSPR + +LK A
Sbjct: 233 LAR---KLPHSYKD-TRNGLTGLDYSSKFSPWLATGALSPRQIDADLKAFERDHGA---- 284
Query: 411 NDGESGSSGAGSNWLMFELLWRDFFR 436
ND G+ WL FELLWRD+FR
Sbjct: 285 ND--------GTYWLWFELLWRDYFR 302
>gi|351729487|ref|ZP_08947178.1| DNA photolyase, FAD-binding protein [Acidovorax radicis N35]
Length = 440
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 155/325 (47%), Gaps = 40/325 (12%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WFRNDLR+HD +L A + +LPV C P D + GF + GP+R +F+ ++
Sbjct: 5 VFWFRNDLRLHDQPALQAALTGGATHLLPVVCQPPAD-EVTPWGFARVGPHRQAFVAAAL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMK 244
DL + A G+ L V P T L LA+A+GA V V D E+ E AA++
Sbjct: 64 RDLGARMAALGNPLQVCHAAPATALPALARAVGAATV-----VCEDIAAPYEQAEVAALR 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI---RKTIEALDQLKGLP 301
G++V W S+L D+P+ + E+P + FR+ V+ +I + L
Sbjct: 119 AAGLQVHTVWHSSLLQPADMPWPVAELPAVFTPFRQAVERADIAPPAPLPPPVSLLPPPL 178
Query: 302 SRGDVEP--GDIPSLLDLGLSQSAAMSQG--------GKPAANSMKGGETEALQRLKKFA 351
DV G +P+ + G + + ++ G PA + G ET AL L ++
Sbjct: 179 VSSDVWEALGAMPAWAEQGAAATDNLAGRDPRSSFPYGTPACD---GSETLALAHLVQYL 235
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A A K ++G + G ++S K SPWLA G LSPR + +LK A N
Sbjct: 236 ARKLAHSYKATRNG----LTGLDYSSKFSPWLATGALSPRKIHADLKTFERDHGA----N 287
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
D G WL FELLWRD+FR
Sbjct: 288 D--------GIYWLWFELLWRDYFR 304
>gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
Length = 416
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 145/311 (46%), Gaps = 35/311 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFRN+LR+HDN L +S S+ VY + + D ++ FLI+++
Sbjct: 4 NIFWFRNNLRIHDNYPLVQCIKDSTSISFVYIVN-----RHLRVLDGHENHKNKFLIDAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L+ NL G +L + G+P + LAK + +Y + VS E E I
Sbjct: 59 NQLKINLSDLGHELYIIEGEPSDIFSSLAKQYQINKIYCEKIVSPYETDEELSITQT--- 115
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+V FW STL ++DDL F + ++P + FR+K VE++ L + LP
Sbjct: 116 ---DVLSFWDSTLLNIDDLDFDVIDLPDTFTTFRKK---VELKPITATLYEGLTLP---- 165
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+P ++ ++ L +G N E A + +K + ++ +A K +
Sbjct: 166 -KPANLSNINSYQLPNFDIKYRGSVDFLNHYTICENGAQKYVKDYFSDKKALEYKQTR-- 222
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + G +FS K S WLA G +S R +F LK N ES + + W+
Sbjct: 223 --NELMGNDFSTKFSVWLAHGLISARQIFTSLK------------NYEESNGANESTYWI 268
Query: 426 MFELLWRDFFR 436
+FELLWRD+FR
Sbjct: 269 LFELLWRDYFR 279
>gi|47223394|emb|CAG04255.1| unnamed protein product [Tetraodon nigroviridis]
Length = 726
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 145 ANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203
A + ++P+YCFDPR Y G KTGP+R FL+ES+ DLRK L +GS+L+VR
Sbjct: 547 AQRNAEHIVPLYCFDPRHYAGTYHYSLPKTGPFRLRFLLESIRDLRKTLLNQGSNLIVRR 606
Query: 204 GKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262
GKPE V+ L K +G+ + A EV+ +E+ E++++ ++V WGSTLYH D
Sbjct: 607 GKPEEVVASLIKQLGSVSTVAFQEEVTSEELNVEKRVKDVCAQLKVKVHTCWGSTLYHRD 666
Query: 263 DLPF-KLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDL 317
DLPF + +P Y FR+ V+ +R + + ++LK LP +E G IP+ DL
Sbjct: 667 DLPFHHISRLPDVYTQFRKAVESQSRVRPVLPSPERLKPLPQ--GLEEGAIPTAEDL 721
>gi|352105175|ref|ZP_08960731.1| deoxyribodipyrimidine photolyase [Halomonas sp. HAL1]
gi|350598555|gb|EHA14670.1| deoxyribodipyrimidine photolyase [Halomonas sp. HAL1]
Length = 481
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 153/318 (48%), Gaps = 38/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFD-----PRDYGKSSSGFDKTGPYRASFL 181
IVW ++DLR+ DN + S +L ++ D P G+S+ + GP R FL
Sbjct: 7 IVWLQDDLRIADNPLFHFTARPSY-LLCLFVVDEQWLAPLIEGESTP---RIGPARLRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+S+ +LR L RGSDL+VR+GKP V++ELA ++ A V R H V I+A
Sbjct: 63 WQSLMELRGELLQRGSDLLVRIGKPSNVVIELAASLNARQV---RVAEHPGVDENTHIQA 119
Query: 242 AMKDEGIE--VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLK 298
++ E V L+ LPF+ +P ++ FR V + + ++ A L
Sbjct: 120 VVESLPSETTVTCMESGRLFERHALPFEQAALPNSFSAFRRSVEQACTVPESRCAPVTLP 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQ 357
P P P L + + +A Q +GGE+ A RL + Q A+
Sbjct: 180 PWPE----APRGFPPL--KAVCEQSATWQPDSRQGYVYRGGESAAHTRLNDYIWRQQGAE 233
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + GANFS ++SPWLA GCLS R ++ AA K + E GS
Sbjct: 234 TYKETRNG----LLGANFSTRVSPWLARGCLSARQVY-----------AAVKAWEAEHGS 278
Query: 418 SGAGSNWLMFELLWRDFF 435
+ + S W+ FELLWR++F
Sbjct: 279 TES-SYWITFELLWREYF 295
>gi|221068159|ref|ZP_03544264.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
gi|220713182|gb|EED68550.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
Length = 431
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 157/318 (49%), Gaps = 35/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++W RNDLR+HD L+ A +LPV C P ++ GF + GP+R ++L ++
Sbjct: 5 LLWLRNDLRLHDQPVLHAACRMGAQYILPVLCL-PDIQARTHWGFARIGPHRRAWLANTI 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA-AMK 244
+L ++ S L++ L LA+A+GA + V D +E+ E A++
Sbjct: 64 QNLAQSFHELRSQLLILDAPAAVALPALAQALGAGII-----VCEDIAAPDEQAEVQALR 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G++V W S+L H D LP+ + ++P + FR+ V+ ++ + L L+ LP
Sbjct: 119 AAGLQVHTVWHSSLLHPDQLPWPMRQLPDIFTPFRQAVEHAKL-QPYPPLPVLEALPR-- 175
Query: 305 DVEPGDIPS------LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P +IPS +L L +A+ S + A ++GGE+ AL L+++ A
Sbjct: 176 --VPPNIPSKYRQEQVLALDAFANASNSLDARSAIALLQGGESAALAHLRQYLARGLPHS 233
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K S WLA G LSPR + EL++ + A
Sbjct: 234 YKRTRNG----LVGLDYSSKWSLWLATGALSPRQAYAELRQFEATRGATES--------- 280
Query: 419 GAGSNWLMFELLWRDFFR 436
S WL FELLWRD+FR
Sbjct: 281 ---SYWLWFELLWRDYFR 295
>gi|329909778|ref|ZP_08275122.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546398|gb|EGF31408.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 439
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 153/319 (47%), Gaps = 38/319 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I WFRNDLR+ DN + A ES ++PV+C DP D + GF++ G +R +FL +++
Sbjct: 5 IYWFRNDLRLLDNPAFLLACRESSHIVPVFCHDPSDRALTHWGFERVGDHRRAFLAATLA 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL L ARGS+L+ G+P+ VL LA++IGA + + DE + + A++
Sbjct: 65 DLAAQLAARGSELIELAGRPQDVLPALARSIGATCIVGEAIAAPDEQDAVQ----ALRTA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI---------EALDQL 297
G+ + W S+L D LPF +P + FR V+ ++ +
Sbjct: 121 GLNIDLVWQSSLLEPDALPFSTRRLPDMFTLFRTAVEKADVAPPVPEDYPALIPPLPVLP 180
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
LP R P P+L D + S GG + L L ++ A
Sbjct: 181 SPLPHRWQDSP---PALPDTDVRSSFPYQSA------VCAGGTSAGLAHLHQYLERKLAH 231
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + G ++S K SPWLA G LS R +I+AA + + + G+
Sbjct: 232 TYKDTRNG----LMGLDYSSKFSPWLATGALSAR-----------TINAAIEQFEDDFGA 276
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ + + WL FELLWRD+FR
Sbjct: 277 NDS-TYWLWFELLWRDYFR 294
>gi|359785167|ref|ZP_09288322.1| deoxyribodipyrimidine photolyase [Halomonas sp. GFAJ-1]
gi|359297465|gb|EHK61698.1| deoxyribodipyrimidine photolyase [Halomonas sp. GFAJ-1]
Length = 483
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 152/318 (47%), Gaps = 38/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG--FDKTGPYRASFLIES 184
IVW +++LRV DN L ++ +L +Y D +G + GP R FL +S
Sbjct: 7 IVWLQDNLRVADNPLLQF-DSPPEQLLCLYVLDQNWLQPCVAGEPTPRLGPARLRFLWQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVY--AH---REVSHDEVKSEEKI 239
+ +LR L RGSDL+VR+G P V+V+LA ++ A V AH EV+H K +++
Sbjct: 66 LMELRGELLQRGSDLLVRIGDPAEVVVQLATSLNARQVRTAAHSGSEEVAHI-AKVSQQL 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLK 298
A+++ ++ Y L D LPF +P N+ FR V K I + A L
Sbjct: 125 PASIQLACVDSGY-----LISADTLPFAAELLPANFSAFRRSVEKQCVIAPPMHAPVTLP 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQ 357
P P P L + Q + Q + GGE A+ RLK + + + +
Sbjct: 180 SWPD----APRGFPPL--KSVCQDSDAWQPDDRQGFTFIGGEAAAVDRLKNYLWQQKGGE 233
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + GA+FS ++SPWLA GCLS R + E+K W E
Sbjct: 234 SYKKTRNG----LLGASFSTRLSPWLARGCLSARQVHQEVK----------AWE--EVNG 277
Query: 418 SGAGSNWLMFELLWRDFF 435
S S W++FELLWRD+F
Sbjct: 278 STESSYWIIFELLWRDYF 295
>gi|71005224|ref|XP_757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
gi|46096457|gb|EAK81690.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
Length = 881
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 115/413 (27%), Positives = 173/413 (41%), Gaps = 112/413 (27%)
Query: 123 RRASIVWFRNDLRVHDN----------ESLNTANNESVS----------------VLPVY 156
R I R DLR+HDN + + T ++V +LPV+
Sbjct: 26 RSVLICLLRLDLRIHDNPLFYYAHQTHKPIVTTAEKTVDLSKLEDEALLGSTADYLLPVF 85
Query: 157 CFDPRDYGKSS---------------SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
FD R+ S GF KTG +R F+ ESV D+R L++ GSDL +
Sbjct: 86 VFDEREVELSGLPGYQRKGPEARTKEYGFWKTGGFRTRFVSESVYDVRSRLRSVGSDLFI 145
Query: 202 RVGKPETVLVELAKAIGA-----DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256
R G PE V+ L KA A + V+ +E+++ E+ E I ++ G+ V++ G
Sbjct: 146 RFGIPEDVISNLVKAFQAEGTHVEGVWLQKEMTYPEINVENAIVEKLRGSGVPVQFVNGK 205
Query: 257 TLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIE-------------------ALD 295
TL H DLPF+ E P + FR+KV+ G + + ++ ALD
Sbjct: 206 TLIHPADLPFESSETPDVFTPFRKKVEALGASMVRPVKHPPAKFKSFPPGVPSTPDYALD 265
Query: 296 -----QLKGLPSR---------GDVEPGDI---------PSLLDLGLSQSAAMSQGGKPA 332
+ GL R G V DI S L L SA + Q +
Sbjct: 266 VSYEVDVDGLAPRALETKDKQEGQVSFHDILRFLLTPLNDSQLPPTLEASALLQQRHPAS 325
Query: 333 ANSMKGGETEALQRLKKFAAEYQAQ----------PPKGNKDGNHDSIYGANFSCKISPW 382
A ++GGE+ AL+RL + ++ PP +++ G +S K+SP+
Sbjct: 326 AFPLRGGESSALERLDWYFVRGKSADSSRWGKSDPPPVARYKQTRNNLIGHAYSTKMSPF 385
Query: 383 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
LA G +SPR +++ L GE + W+ FELLWRD+F
Sbjct: 386 LAYGSVSPRQIWEALDDHERKF--------GED----QNTYWVRFELLWRDYF 426
>gi|443895299|dbj|GAC72645.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 876
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 154/358 (43%), Gaps = 86/358 (24%)
Query: 152 VLPVYCFDPRDYGKSS---------------SGFDKTGPYRASFLIESVSDLRKNLQARG 196
+LPV+ FD R+ S GF KTG +R F+ ESV D+R L+A G
Sbjct: 84 LLPVFVFDEREMELSGLPGYNRKGPEARTKEYGFWKTGGFRTRFISESVYDVRSRLRAAG 143
Query: 197 SDLVVRVGKPETVLVELAKAIGAD-----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251
SDL++R G PE V+ L A AD V+ +E+++ E+ E I ++ G+ V+
Sbjct: 144 SDLLIRFGIPEDVIANLVSAFQADGTHVEGVWLQKEMTYPEIDVENAIVEKLQGTGVPVQ 203
Query: 252 YFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE---------------------IRKT 290
+ G TL H DLPF+ E P + FR+KV+ + R T
Sbjct: 204 FVNGKTLIHPADLPFESSETPDVFTPFRKKVEALGPNMVRPVKPSPAKFKSFPPRVPRTT 263
Query: 291 IEALD-----QLKGLPSR---------GDVEPGDI---------PSLLDLGLSQSAAMSQ 327
ALD + GL R G V DI S L L SA + Q
Sbjct: 264 DYALDVSYEVDVDGLAPRALEPKDKQEGQVSFHDILRFLLTPLNDSQLPPTLEASALLQQ 323
Query: 328 GGKPAANSMKGGETEALQRLKKFAAEYQAQ----------PPKGNKDGNHDSIYGANFSC 377
+A ++GGE+ AL RL + ++ PP +++ G +S
Sbjct: 324 RHPASAFPLRGGESSALDRLDWYFVRGKSADSTRWGKADPPPVARYKQTRNNLIGHAYST 383
Query: 378 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
K+SP+LA G +SPR +++ L GE + W+ FELLWRD+F
Sbjct: 384 KMSPFLAYGSISPRQIWEALDDHEKKF--------GED----QNTYWVRFELLWRDYF 429
>gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
Length = 447
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 149/322 (46%), Gaps = 34/322 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR DLR+ DN A +++ ++LPVY DP + GFD+ GP+R L +++
Sbjct: 5 LYWFRQDLRLRDNRCFIRACDQADALLPVYILDPAMEQPTRWGFDRIGPHRRVVLGQALR 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L + L+ RGS L + G+P L+ + + D V+ + E + ++ +++
Sbjct: 65 GLDRQLRQRGSGLCLLQGQPVDQLLAMVRQGAIDTVWVEDIAAPQERALVDALKQSLEPL 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIEALDQLKGLPSRG 304
G+ V W S+L DDLPF + +P ++ FR++V+ V I A D + P
Sbjct: 125 GVSVYTGWQSSLIAPDDLPFAIDRLPDSFTPFRKRVEQAAVCIEHPYPAPDAVPPWPESV 184
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG----------GETEALQRLKKFAAEY 354
I + D A +PA ++ E A + L ++ A
Sbjct: 185 PYPTASIDAQFD------ALCGASTRPAVDARSAFPCDDPDCSVDEIGAQRHLDQYFARG 238
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
K + + + G ++S K SP+LA+G LS R ++ A++ + +
Sbjct: 239 LPHTYKATR----NQLIGKDYSSKWSPFLALGVLSARQVY------------AARQHFEQ 282
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
+ + G+ WL FELLWRD+FR
Sbjct: 283 ARGANEGTYWLRFELLWRDYFR 304
>gi|359395694|ref|ZP_09188746.1| hypothetical protein KUC_2354 [Halomonas boliviensis LC1]
gi|357969959|gb|EHJ92406.1| hypothetical protein KUC_2354 [Halomonas boliviensis LC1]
Length = 481
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 155/317 (48%), Gaps = 36/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRASFLIES 184
IVW ++DLR+ DN L+ ++ +L +Y D + + G + GP R FL +S
Sbjct: 7 IVWLQDDLRIADNPLLHFVSS-PCYLLCLYVVDEQWFSPLFDGESTPRIGPARLRFLWQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ +LR L RGSDL+VR+GKP V++ELA + A V R H V+ I+A
Sbjct: 66 LMELRGELLRRGSDLLVRIGKPSDVVIELASTLNARQV---RVADHAGVEESAHIQAV-- 120
Query: 245 DEGI----EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
++G+ L LPF+ +P ++ FR +V+GV + + A L
Sbjct: 121 EQGLPSHTAFDCLESGRLIDRQALPFEREALPASFSAFRRRVEGVCTVPVSRCAPVTLPP 180
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA-QP 358
P P P L + + +A Q + GGE+ A RLK + + Q +
Sbjct: 181 WPE----APRGFPPLK--AVCEQSANWQPDPRQGYAYWGGESAAHGRLKDYLWDQQGGET 234
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + GANFS ++SPWLA GCLS R + D +K + E+GS+
Sbjct: 235 YKKTRNG----LLGANFSTRVSPWLARGCLSARQVNDAVKAW-----------EAENGSN 279
Query: 419 GAGSNWLMFELLWRDFF 435
+ S W+ FELLWR++F
Sbjct: 280 ES-SYWITFELLWREYF 295
>gi|395760275|ref|ZP_10440944.1| cryptochrome, dash family protein [Janthinobacterium lividum PAMC
25724]
Length = 444
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 150/330 (45%), Gaps = 58/330 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRASFLIES 184
I WFRNDLR+ DN +L A + +L VYC ++ +D +T P+R FL
Sbjct: 14 IYWFRNDLRLDDNPALRQACQRAGHLLFVYCHRS---ASVATRWDVPRTSPHRQHFLRSG 70
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DL L + GS L+ G P VL+ LA +IGA ++ E++ E + E AA++
Sbjct: 71 LADLATQLASYGSQLLEVEGDPAHVLLALAHSIGATTIHC-EEIAAPEEQGE---LAALR 126
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G+ V+ W S+L LPF +P + FR V+ ++ +P+
Sbjct: 127 AAGLTVEALWQSSLLDPAALPFPCAALPEVFTNFRTLVERQQV------------VPTAP 174
Query: 305 DVEPGDIP------------------SLLDLGLSQSAAMSQGGKPAANSMKGGETEALQR 346
P IP +L D L+ + + PA GG T A +
Sbjct: 175 LARPTTIPPLPPAFAALAETWAAAPDALQDAHLATARSSFPYALPA---FYGGPTAAAEH 231
Query: 347 LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
L+++ A A K +++G + G ++S K SPWLA G LS R + L++ + A
Sbjct: 232 LRQYFAGELAHTYKLSRNG----LTGVDYSTKFSPWLACGALSARMVCAALRQFEAAHGA 287
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
A + W+ FEL+WRD+FR
Sbjct: 288 ------------NASTYWIWFELMWRDYFR 305
>gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
gi|81821701|sp|Q5QXE0.1|CRYD_IDILO RecName: Full=Cryptochrome DASH
gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
Length = 449
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 146/315 (46%), Gaps = 38/315 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R + FRNDLRV DN +L A S +++ +CF+P G G +R +FL +
Sbjct: 15 RLGLFVFRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQ 74
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ LR L+ RG L+V G + +L EL DA++ + + E+++ +
Sbjct: 75 SLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGY-----YERLQLGL 129
Query: 244 KDEGIEVKYFW---GSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ F +TL+ +LPF+L ++P + FR+KV+ + +++ ++ L L
Sbjct: 130 LQQRFPFLPFHETPNNTLFSEQELPFELADLPETFSQFRKKVEPLSRNFSVQPVNALPSL 189
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
P + PG L+ + A++ +GGE AL L + + A K
Sbjct: 190 P-KNISYPGFKAETLN-------------ELASDDFEGGERAALTHLTSYFSGESAGTYK 235
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++ D + S K SPWLA GCLS R + L+ T GE+ S
Sbjct: 236 QTRNALDD----FSSSTKFSPWLAQGCLSVRQIMAALRAYETEF--------GENES--- 280
Query: 421 GSNWLMFELLWRDFF 435
S W+ FELLWR++F
Sbjct: 281 -SYWISFELLWREYF 294
>gi|225010911|ref|ZP_03701378.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
gi|225004958|gb|EEG42913.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
Length = 427
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 154/315 (48%), Gaps = 29/315 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
SIVWF N+LRV DN L A N + V+ VYC +P K F K GP+RA F +ES
Sbjct: 3 SIVWFTNNLRVADNPLLTAACKNNANEVVGVYCLNPE---KLDGDFPKIGPFRAKFNVES 59
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL+++L+ + +G P L E +Y + +EV ++IEA +
Sbjct: 60 LLDLKRSLEELNIPFAILIGDPTKRLPEYINENNIGTLYFQKVWHEEEVLINKEIEAKI- 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPSR 303
I++ + L + +PF+L ++P + FR+KV+ +E+ +E + +
Sbjct: 119 SPNIQLVSLYDQFLLGPEIIPFELYKLPKVFTPFRKKVEATLEVPAPLE----VPAKQTN 174
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK--FAAEYQAQPPKG 361
P L +S+ + +A KGGE A +R+ F+ ++ AQ K
Sbjct: 175 TSNTPLFYSDALWASISKELLSIKIDSRSAFPFKGGEKAAQERIDHYFFSTDHVAQ-YKE 233
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K+S WLA GC+S R+++ +LK ++ A
Sbjct: 234 TRNG----LIGLDYSTKLSAWLANGCISARTIYYQLKAYEKTVKA------------NES 277
Query: 422 SNWLMFELLWRDFFR 436
+ W++FELLWR+FF+
Sbjct: 278 TYWVLFELLWREFFK 292
>gi|119713707|gb|ABL97757.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
EB0_41B09]
Length = 424
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 28/313 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFRNDLRV DN SLN A S +L VY D + + + GF + GP+R +L + +
Sbjct: 3 SIYWFRNDLRVIDNLSLNEAIESSDEILFVYMQDVQSFKDTEWGFSRMGPHRKLYLSQGL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L++ L G L + L++L + D +Y SH+E+ E + ++
Sbjct: 63 NALQEKLSNYGHSLNYYLDDTVDGLLKLVEKFHIDRIYCESIDSHEELDQEIR----LRG 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL--DQLKGLPSR 303
+++ ++ S L+ D +PF L ++P + FR++++ E++ +L ++ + S
Sbjct: 119 HKVDLYSYYQSGLFLNDQIPFNLNDLPDVFTKFRKEIESREVKPIKPSLINQRINAIKSI 178
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
D E +I + Q + + + GGE + L+ A + + P K
Sbjct: 179 VDEESNEIE------MEQMSYPKSSFPISEDRFFGGEEKGFTFLE---AYFSSNKPSTYK 229
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ + G +FS K SPWLA G +S R ++D L ++ +
Sbjct: 230 K-TRNELMGIDFSTKFSPWLASGYISARQVYDFLLSYELNV------------IKNESTY 276
Query: 424 WLMFELLWRDFFR 436
W+ FELLWR++FR
Sbjct: 277 WIFFELLWREYFR 289
>gi|393238519|gb|EJD46055.1| cryptochrome [Auricularia delicata TFB-10046 SS5]
Length = 469
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 155/350 (44%), Gaps = 62/350 (17%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY------GKSSS-------- 168
R I FRNDLR+HDN L A N + +LP+YCFDPR GK+
Sbjct: 3 RTIRIALFRNDLRIHDNPMLQAALNGADELLPLYCFDPRQVDLTALNGKTEELISGGPFD 62
Query: 169 -------GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI---- 217
G + ++ FL+ESV DL+ +L+ S+L+VR G P+ ++ +L + +
Sbjct: 63 AARTWHLGLPRNQKFKLKFLVESVLDLQHDLRRLKSELLVRFGAPDQIIDKLVEHLRQGA 122
Query: 218 --GADAVYAHREVSHDEVKSEE---KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMP 272
G ++ RE + +E + EE K + D GST+ H DLPF + P
Sbjct: 123 PDGNVELFCQREQTFEETRVEEALKKFNLTLTDG--------GSTMVHPGDLPFAPKDCP 174
Query: 273 TNYGGFREKVKG----VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQG 328
+ FR+KV+G V +R + D PS+ L A +
Sbjct: 175 AVFTSFRKKVEGLRPMVRDLLPTPTSLPPLPSGARDFMLSHDAPSI----LRSIADLDAS 230
Query: 329 GKP-AANSMKGGETEALQRLKKFAAEYQAQP-PKGNKDGNHDSIYGANFSCKISPWLAMG 386
P + + GG + ++RLK Y + P P +++ G + S SP+L++G
Sbjct: 231 FDPRSTTAYCGGASSGIERLK----HYCSPPGPLFTYKKTRNALSGRDGSSHFSPFLSVG 286
Query: 387 CLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
LS R +F ++ D G S WL+FELLWRD+++
Sbjct: 287 ALSARQIFWAVRDA----------EDTRDGGGNEDSYWLIFELLWRDYWK 326
>gi|448747406|ref|ZP_21729066.1| Cryptochrome, DASH [Halomonas titanicae BH1]
gi|445565098|gb|ELY21211.1| Cryptochrome, DASH [Halomonas titanicae BH1]
Length = 481
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 157/318 (49%), Gaps = 38/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-----GKSSSGFDKTGPYRASFL 181
IVW ++DLR+ DN L+ A+ S ++ +Y D R + G+S+ + GP R FL
Sbjct: 7 IVWLQDDLRIADNPLLHFASPPSY-LMCIYVLDERWFLPLFDGESTP---RIGPARLRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+S+ +LR L RGSDL+VR+GKP V++ELA + A V +E + +E
Sbjct: 63 WQSLMELRGELLKRGSDLLVRIGKPSDVVIELASKLNAREVRVADHAGVEEFAHIQAVEQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
+ + + L L LPF+ +P ++ FR V+ + + A L
Sbjct: 123 GLPSQ-TALNCIESGRLIDLKALPFEREALPGSFSAFRRSVESECAVPASRCAPITLPPW 181
Query: 301 P--SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQ 357
P +RG P L + + +A Q + +GGE+ A RLK + Q +
Sbjct: 182 PEAARG------FPPL--KAVCEQSATWQPDPRQGYAYRGGESAAHGRLKDYLWRQQGGE 233
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + GANFS ++SPWLA GCLS R + DE A W + E+GS
Sbjct: 234 TYKKTRNG----LLGANFSTRVSPWLARGCLSARQV-DE---------AVKAW-EAENGS 278
Query: 418 SGAGSNWLMFELLWRDFF 435
+ + S W+ FELLWR++F
Sbjct: 279 NES-SYWISFELLWREYF 295
>gi|409195416|ref|ZP_11224079.1| DASH family cryptochrome [Marinilabilia salmonicolor JCM 21150]
Length = 433
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 146/321 (45%), Gaps = 47/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLIES 184
I WFRNDLR+HDN +L A +E V+P++ D + S F +TG +R FL ES
Sbjct: 14 IYWFRNDLRIHDNPALTMALSEGNPVIPIFIADNIWFETSHPELNFPRTGLFRKQFLAES 73
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DL K L+ L + G +L +L + + A RE++ +E E+++ +
Sbjct: 74 LADLDKTLKKFDRTLYIFKGDTAKILKKLVAHTKSSKIVAQREIADEEATIEQRVS---R 130
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI---------RKTIEALD 295
D +E+ WGS LY D + F + + P Y F+ KV +K ++ L
Sbjct: 131 DMHLELH--WGSMLYQPDQIDFPVEKSPFYYTRFKNKVLSQAFTPSPMHSPAKKELQLLS 188
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
++ P + P + +S+ G GGET ALQR++ EY
Sbjct: 189 KISLPPDLTKLNPDE------------WLISKKG----TFFHGGETNALQRME----EYF 228
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
+ + G NFS ++PWLA G LSPR + L+K S + ES
Sbjct: 229 NSGGAAHYSETRNQFEGTNFSSFLAPWLANGSLSPRIFYQHLQKAKKGHS-----ENAES 283
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
++ L +L+WRD FR
Sbjct: 284 FNT------LTEQLIWRDNFR 298
>gi|329894043|ref|ZP_08270028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
proteobacterium IMCC3088]
gi|328923215|gb|EGG30535.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
proteobacterium IMCC3088]
Length = 431
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 40/312 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFLIES 184
+++W +NDLR+ DN A+ S +L VYC+ PR + + G R FL E+
Sbjct: 3 TLLWLQNDLRLADNAGFQLASQAS-ELLIVYCWPKPRPWCNLTG----LGAQRTRFLSET 57
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ LR L G D+ V V PE VL + + +G + + R +++E S + ++ A+
Sbjct: 58 LEHLRHQLSELGQDVFVSVQHPEQVLPLMIEELGIEHLITSRPQAYNESNSLKALQDAL- 116
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
D + V G+TL+ DDL F L ++P ++ FR+K++ I + + QL P
Sbjct: 117 DCNVSVTR--GNTLFDEDDLTFDLADLPKHFTPFRKKMEAQPIAEPLATPKQLP--PKIT 172
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGNK 363
+V G P S +P +GGE EAL+R+K + + QA
Sbjct: 173 EVRYGPTP-------------SNNTRPHPTFPYRGGEQEALRRIKHWVFDRQA---IATY 216
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+++ G + +SPWLA G +SPR++ +++ ++A +
Sbjct: 217 KQTRNALDGLDNYSALSPWLATGAVSPRTILHHVQRFENEVTA------------NESTY 264
Query: 424 WLMFELLWRDFF 435
W+ FELLWR+FF
Sbjct: 265 WVFFELLWREFF 276
>gi|443474143|ref|ZP_21064164.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
gi|442905078|gb|ELS29993.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
Length = 472
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 157/315 (49%), Gaps = 26/315 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +++W + DLR+ D+ +L+ A ++ +LP++ DP+ S G + G +RA FL+E
Sbjct: 2 RRALLWLKQDLRLDDHPALHAAI-QADRLLPLFVLDPQWLRPSPLGPRRLGVHRARFLLE 60
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L L+ GS L+V G E V+ L + + D V EV+ E+ ++ A+
Sbjct: 61 SLAALDAGLRQHGSRLLVVQGDAERVIPSLVERLDLDEVLTLEEVAPFELDEMRRVRHAL 120
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPS 302
G+ + + G++L+ ++LP L +P+ + FR+ V+ V + + L LP+
Sbjct: 121 ---GVPLTEWPGNSLFREEELPVPLQALPSVFNRFRDLVEARVHVFQPNPTPHALPPLPT 177
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPA-ANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+PSL LGL + G PA A GGE AL RL+ + E ++
Sbjct: 178 GAAALLTPLPSLSRLGLGEPL-----GVPATAFPFSGGEPAALARLRDYLWESRS---IR 229
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+ D + G+ +S K+SPWLA G LSPR + EL + + G S+
Sbjct: 230 DYRIRSDGMIGSEYSSKLSPWLANGSLSPRRVAAELHRLES--------QHGRDDSTQQ- 280
Query: 422 SNWLMFELLWRDFFR 436
L +LLWR++FR
Sbjct: 281 ---LWHQLLWREYFR 292
>gi|302838410|ref|XP_002950763.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
gi|300263880|gb|EFJ48078.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
Length = 97
Score = 122 bits (307), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/96 (57%), Positives = 72/96 (75%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A R+ +++WFRNDLR+HDN L+ A E SVLPVY DPRDYGK +GF +TGP RA
Sbjct: 1 GAARKPAVMWFRNDLRLHDNPVLDRACREGTSVLPVYVLDPRDYGKGPNGFGRTGPTRAQ 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAK 215
F++++V DLR L+A GSDL+VR+G PE V+ ELA+
Sbjct: 61 FIMDAVQDLRSRLRAAGSDLIVRMGHPEEVVPELAR 96
>gi|118594165|ref|ZP_01551512.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
HTCC2181]
gi|118439943|gb|EAV46570.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
HTCC2181]
Length = 426
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 157/315 (49%), Gaps = 32/315 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFRNDLR+ DN +LN+A N S +L V+ D + + F + G +R F+ + +
Sbjct: 3 SIYWFRNDLRLEDNAALNSALNNSDHILFVHIDDDMNDAECEWQFSRRGQHRKIFMYQGL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L+ NL++ G L VGK + EL ++VY ++ E +++E++ +K+
Sbjct: 63 EELQLNLKSYGHHLNRFVGKTNLIFQELINRHHINSVYC-ESINAFEEQAQERL---IKE 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIEALDQLKG-LPS 302
G+ + ++ S++Y LPF + ++P + FR+ ++ G+ + I Q+K +P
Sbjct: 119 LGVNLYSYYQSSMYMPHQLPFDIKDLPDVFTHFRKNIETTGIVPEEPIALSGQIKNTIPI 178
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKG 361
+ S +L + SQ P ++ KGGE A + ++ +Q+ P
Sbjct: 179 --------LDSKTNLTQELTEDYSQSSFPISDKKFKGGERTAQLHIDQY---FQSDYPNS 227
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
K + +++ G S K SPWL++G +S ++ LK+ + S+
Sbjct: 228 YK-YSRNNLMGIECSTKFSPWLSLGFISANQIYSALKRYE------------QRNSANDS 274
Query: 422 SNWLMFELLWRDFFR 436
+ W+ FELLWRD+FR
Sbjct: 275 TYWIYFELLWRDYFR 289
>gi|269961334|ref|ZP_06175699.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833885|gb|EEZ87979.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 462
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 43/314 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRASFLIES 184
+ WF NDLR+HDN L A+ E ++ +YC+ P+ Y K + + G + FL ES
Sbjct: 19 LYWFTNDLRLHDNPLLLRASAEVDLLICIYCY-PKVSSYLKQYAQEPEFGFAKQQFLDES 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L +L A L V P + A +G +YA DE + I+A
Sbjct: 78 LHCLNLSLNALNQRLQVVDLHPYQAIKHAADKLGVTHLYADAVAGSDEQDVVDNIQAEAP 137
Query: 245 DEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ EV+ +L+ ++DLPF+L +P + FR+KV+ + + + +EA+ +L LP
Sbjct: 138 HLAVIQSEVR-----SLFCVEDLPFELEALPDTFTKFRKKVEKLALAEPVEAVTRLPALP 192
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ +P+L ++++ +P+ GGE L+ +++ A A K
Sbjct: 193 -----DGLALPTL---------SLTRDVQPSL--FTGGERAGLEHCRQYFASTLASEYKQ 236
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA GCLSP++++ LK+ AA+ ND
Sbjct: 237 TRNG----LDGMDYSTKFSPWLAHGCLSPKTIYAMLKR----YEAANGAND--------S 280
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 281 TYWIYFELLWREYF 294
>gi|253998728|ref|YP_003050791.1| DASH family cryptochrome [Methylovorus glucosetrophus SIP3-4]
gi|253985407|gb|ACT50264.1| cryptochrome, DASH family [Methylovorus glucosetrophus SIP3-4]
Length = 454
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 156/326 (47%), Gaps = 40/326 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS----VLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
I WFR DLR+HD +L A + +LPV+ DP + G + GF + P+R ++L
Sbjct: 16 IFWFRRDLRLHDQFALAAAIQHAQQQGGWLLPVFVHDPAESGLTRWGFARMSPHRRAWLA 75
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS--EEKIE 240
+V L L+A GSDLV G LV L +A+G + DE+ + E+ +
Sbjct: 76 SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLVC------DEIAAPEEQAVV 129
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR--KTIEALDQLK 298
AA+ G+ V+ W S+L ++LPF +P + FR ++ ++ + + ++ QL
Sbjct: 130 AALLAAGVSVQTIWQSSLVAAENLPFDPQAVPDTFTTFRHALERAHVQAARPLPSIKQLP 189
Query: 299 GLPSRGDVEPGDIPS-LLDLGLSQSAAM------SQGGKPAANS-MKGGETEALQRLKKF 350
LPS + IPS + G + A ++ P +S G E ALQ L+++
Sbjct: 190 PLPSHALLNA--IPSEVASDGTDHAMACEPWPYDARSAFPLGSSGFDGSEQAALQHLQQY 247
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
K ++G + G ++S K SPWLA G LS R + ++
Sbjct: 248 CQRRLPHSYKSTRNG----LIGVDYSSKWSPWLATGALSARQAWAAIQAF---------- 293
Query: 411 NDGESGSSGAGSNWLMFELLWRDFFR 436
+ E G++ + S WL FELLWRD FR
Sbjct: 294 -EAEHGANES-SYWLWFELLWRDHFR 317
>gi|384248771|gb|EIE22254.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Coccomyxa
subellipsoidea C-169]
Length = 482
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 152/322 (47%), Gaps = 44/322 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFR LR+HDN SL A + + PV+ DP D G R +FL+ES+
Sbjct: 10 SILWFRKGLRLHDNPSLLAAIKGATHLYPVFVLDPWFLKP-----DVVGVNRLNFLLESL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR +LQARGS+L+V G P+ VL + K + + + + KI AA ++
Sbjct: 65 TDLRSSLQARGSNLLVLRGNPQDVLPRVWKDWNITRLCFEADTEDYAEERDTKITAAAQE 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP--- 301
GIEV TLY D+ K G+ P Y GF + + + K P
Sbjct: 125 AGIEVISCVSHTLYDTSDVVAKNGGKAPLTYKGFEKAITALGPPPAPVEDPPAKLPPLAA 184
Query: 302 -SRG-DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAAE 353
S+G D E +PSL +LG A+ +KGGETEAL RL K + A
Sbjct: 185 DSKGTDSETTSVPSLRELGYPDE---------ASTDIKGGETEALARLAEQLSDKGWVAA 235
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
++ PKG+ + + + +SP L GCLSPR ++ L++ + +
Sbjct: 236 FEK--PKGDP-----TAFIKPATTVLSPHLKFGCLSPRLFYEALQRV---------YKEK 279
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
+ S S L+ +LLWR+F+
Sbjct: 280 KEHSKPPVS--LLGQLLWREFY 299
>gi|343427008|emb|CBQ70536.1| related to Deoxyribodipyrimidine photo-lyase [Sporisorium reilianum
SRZ2]
Length = 881
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 166/413 (40%), Gaps = 112/413 (27%)
Query: 123 RRASIVWFRNDLRVHDNE--------------------SLNTANNESV------SVLPVY 156
R I R DLR+HDN L+ +E++ +LPV+
Sbjct: 26 RSVLICLLRLDLRIHDNPLFYYAHQTPKPIVSTAEKTVDLSKLEDEALLGSTADYLLPVF 85
Query: 157 CFDPRDYGKSS---------------SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
FD R+ S GF KTG +R F+ ESV D+R L++ GSDL++
Sbjct: 86 VFDEREMELSGLPGYQRKGPEARTKEYGFWKTGGFRTRFISESVYDVRPRLRSVGSDLLI 145
Query: 202 RVGKPETVLVELAKAIGA-----DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256
R G PE V+ L A A + V+ +E+++ E+ E I + G+ V++ G
Sbjct: 146 RFGTPEEVISNLVHAFQAQGTHVEGVWMQKEMTYPEIDVENAIVEKLHGSGVPVQFVHGK 205
Query: 257 TLYHLDDLPFKLGEMPTNYGGFREKVKGV---EIRKTIEALDQLKGLP------------ 301
TL H DLPF+ E P + FR+KV+ + +R + + K P
Sbjct: 206 TLIHPADLPFESSETPDVFTPFRKKVEALGPKMVRPVKHSPSKFKSFPPVVPSTPDYALD 265
Query: 302 --------------------SRGDVEPGDI---------PSLLDLGLSQSAAMSQGGKPA 332
G V DI S L L SA + Q +
Sbjct: 266 VSYEVDVDGLAPRALETKDKQEGQVSFHDILHFLLTPLNDSQLPPTLEASALLQQRHPAS 325
Query: 333 ANSMKGGETEALQRLKKFAAEYQAQ----------PPKGNKDGNHDSIYGANFSCKISPW 382
A ++GGE+ AL RL + ++ PP +++ G +S K+ P+
Sbjct: 326 AFPLRGGESSALDRLDWYFVRGKSADSSRWGKADPPPVARYKQTRNNLIGHAYSTKMPPF 385
Query: 383 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
LA G +SPR +++ L GE + + W+ FELLWRD+F
Sbjct: 386 LAYGSISPRQIWEALDDHEKKF--------GEDQN----TYWVRFELLWRDYF 426
>gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010]
gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010]
Length = 441
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 146/316 (46%), Gaps = 39/316 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKT--GPYRASFL 181
+ + WF NDLRVHDN +L A+ ++ ++C+D + +GF+ G R FL
Sbjct: 3 KTGLFWFNNDLRVHDNPALLEASLNCDRLICLFCYDT--FWDKPTGFNAKPLGDKRRQFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES++DL+ L+ARG L+V G P ++ EL + VY V E + + + A
Sbjct: 61 LESLNDLQHTLEARGQQLIVMKGDPVAIISELLSKYHVNHVYRSYHVGVYENRQWQHLRA 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
++ +W +L+ LPF L +P + FR+ V+ + I K ++ L
Sbjct: 121 DFP--RVQFDSYWTHSLFQQRQLPFDLTSLPDTFSQFRKIVESLPIDKPVQMPKTLAVPV 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPK 360
S + +P+ + + + GGE A++ ++ F+++Y AQ
Sbjct: 179 SELHEDTLPLPTY---------------RNSQDHFTGGEKAAIEHMEAYFSSDYPAQYKL 223
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
D +H S S K S WLA G LS + + +L++ + +A
Sbjct: 224 LRNDLDHWS-----HSTKFSAWLANGSLSVKRLLQQLRQFEKTHTA------------NE 266
Query: 421 GSNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 267 STYWIFFELLWREYFQ 282
>gi|264678127|ref|YP_003278034.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
gi|262208640|gb|ACY32738.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
Length = 473
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 157/318 (49%), Gaps = 35/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++W RNDLR+HD L+ A +LPV C P ++ GF + G +R ++L +++
Sbjct: 47 LLWLRNDLRLHDQPVLHAACRMGAQYLLPVLCL-PDIQARTRWGFARIGQHRRTWLTKTI 105
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA-AMK 244
+L +N S L++ L LA+A+GAD + V D +E+ E A++
Sbjct: 106 QNLAENFHELRSQLLILNAPAAKALPALAQALGADII-----VCEDIAAPDEQAEVEALR 160
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR-----KTIEALDQL-K 298
G++V W S+L H D LP+ + ++P + FR+ V+ +++ EAL ++
Sbjct: 161 ASGLQVHTVWHSSLLHQDQLPWPVRQLPDVFTPFRQAVEHAKLQPYPPLPVPEALPRVPP 220
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+P+ E IP+L L + S + A ++GGE+ AL L+++ A
Sbjct: 221 HIPNEYLRE--QIPALSALA---GPSPSLDTRSAIALLQGGESAALAHLRQYLARGLPHS 275
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K S WLA G LSPR + EL++ + A
Sbjct: 276 YKRTRNG----LVGLDYSSKWSLWLATGALSPRQAYAELRQFEATRGATES--------- 322
Query: 419 GAGSNWLMFELLWRDFFR 436
S WL FELLWRD+FR
Sbjct: 323 ---SYWLWFELLWRDYFR 337
>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 550
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 38/332 (11%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+I WFRN LR HDN L A +S S+LP+Y DP ++ + + + G RA+FL+ES
Sbjct: 11 VAIHWFRNGLRFHDNPCLLDACQKSESLLPIYVVDP-EFPFAQTAGCRAGTIRANFLLES 69
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE----VSHDEVKSEEKIE 240
++++ + L+ GS LVV +GK VL E+ A A++ +E V + ++ + I+
Sbjct: 70 INEVDEKLRKMGSQLVVVLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQDAETIQAIK 129
Query: 241 AAMKDEG--IEVKY--FWGSTLYHLDDLPFKLGE--MPTNYGGFREKVKGVEIRKTIEAL 294
+K +G E K+ + TL+ ++ + + P+ YG F + + + K + +
Sbjct: 130 NRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKEVNEV 189
Query: 295 DQLKGLPSRGD-------VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL 347
++ LP++ E +P+L DLG + +A + + GGE A++ L
Sbjct: 190 KEVPSLPNKSVKLLEKSFAEALRMPTLKDLGYAAAADDMKNSGKGGYAFAGGENAAIELL 249
Query: 348 KKFAAEYQ-----AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT 402
K A Q +P D S + +SP++ GC+SPR + EL K
Sbjct: 250 AKNMARSQWVATFEKPKTSPNDATRPS------TTALSPYVKHGCISPRRFYHELSKV-- 301
Query: 403 SISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
SK+N E+ L +L+WRDF
Sbjct: 302 ----YSKYNSKETSKPPVS---LHGQLMWRDF 326
>gi|269104335|ref|ZP_06157031.1| deoxyribodipyrimidine photolyase single-strand-specific
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268160975|gb|EEZ39472.1| deoxyribodipyrimidine photolyase single-strand-specific
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 436
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 138/307 (44%), Gaps = 32/307 (10%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
F+NDLR+HDN +L A + +L VYC + G R FL++S+ L
Sbjct: 8 FQNDLRLHDNLALLNATTQCDRLLLVYCLPYHQANRYPYHIHNYGALRLQFLLQSLHQLH 67
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
+ LQ +L+V + P +L +L + + +V + E ++ + + + IE
Sbjct: 68 QQLQDLEQELLVFLEHPLHILPQLISQYDIHTIISSEQVGYYENQTWQTLN--QRYPYIE 125
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPG 309
K + TL H + LPF L ++P+ + FR +V+ +E+ + L P++
Sbjct: 126 FKQWPTHTLLHKEQLPFDLNKLPSTFSQFRRQVEHIELTPLTPYISHLPPSPNK----IA 181
Query: 310 DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDS 369
I S+LD +S P + GGE A+ L + +A K + +
Sbjct: 182 HI-SILDSFISH---------PKPSDFIGGEATAISHLTAYFKSDKASRYKETR----ND 227
Query: 370 IYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFEL 429
+ G ++S K SPWLA GCLS + + EL + + S W+ FEL
Sbjct: 228 LDGWDYSTKFSPWLAQGCLSAKRVIYELNQYHHQVDET------------PSSQWIKFEL 275
Query: 430 LWRDFFR 436
LWR++F+
Sbjct: 276 LWREYFQ 282
>gi|224003307|ref|XP_002291325.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
CCMP1335]
gi|220973101|gb|EED91432.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
CCMP1335]
Length = 571
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 169/350 (48%), Gaps = 61/350 (17%)
Query: 124 RASIVWFR-NDLRVHDNE--------SLNTANNESVS-----VLPVYCFDP-RDYG---K 165
+ +I FR DLR+HDN SL T+++++ S +LPV+ FD R YG K
Sbjct: 9 KLNIHLFRQTDLRLHDNPALCHTVDLSLGTSSSDAASTAPTGILPVFVFDTTRIYGSNAK 68
Query: 166 SSSGFD-KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA--- 221
S G + K GP RA F IE+V+DLR NL+ RGS LVV VG PE++L +A A +
Sbjct: 69 SRLGNNLKCGPRRARFAIEAVADLRSNLEKRGSGLVVAVGSPESILARIATAAVESSGDK 128
Query: 222 -----VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF-----WGSTLYHLDDLPFKLG-- 269
V EV +E+ ++ I +++ F WGST+Y + LPF G
Sbjct: 129 GALINVVCQEEVCSEELSVDKAIRSSLAKTMKSTSKFTFETVWGSTMYDPETLPFDGGVF 188
Query: 270 EMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPSRGDV--EPGDIPSLLDLGLSQSAAMS 326
+P + FR+ V+ +I LK +P+ D+ DI S+ S+ S
Sbjct: 189 GVPDIFSPFRKDVEAKCQIVNDANNKCSLKYMPTLSDLGYNAEDIESV-------SSVDS 241
Query: 327 QGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMG 386
+ P + +GGET AL+R+K + + K D + + G+++S K +PWLA+G
Sbjct: 242 RTALPV--NYRGGETFALRRVKDYI--WDKDLLKLYFD-TRNGMIGSDYSTKFAPWLALG 296
Query: 387 CLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+SPR + E + E + W++ ELL RD F+
Sbjct: 297 NVSPRYIARECSRYE------------EQRVQNKSTYWVVLELLIRDHFK 334
>gi|269965489|ref|ZP_06179607.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
gi|269829852|gb|EEZ84083.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
Length = 450
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRD-YGKSSSGFDKTGPYRASFL 181
++ + WF NDLR+HDN L +A+ E ++ +YC+ Y + G + FL
Sbjct: 3 KKIGLYWFTNDLRLHDNPLLKSASVEMDELICLYCYPSMTPYLHHFAQEASFGRAKLQFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+S+L ++L G L P+ + G +YA DE ++ +++
Sbjct: 63 DSSLSELNQSLNHLGQRLWAVELTPDQAIKYAVNRFGVTHIYADAFPGSDEQQALDRV-- 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
A +++K TL + LPF L +PT + FR++V+G++I + E++ L +P
Sbjct: 121 AEGASHVKIKQQAIRTLLREEQLPFDLSNLPTTFTQFRKQVEGLDISRPHESIRSLPPIP 180
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
L + L A K A GGE+ L+ +++ A A K
Sbjct: 181 -------------LGVNLPSVTAYYFDAKAA---FHGGESRGLEHCRQYFASTLASEYKQ 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA GC+SP++++ LK+ + E+G++ +
Sbjct: 225 TRNG----LDGMDYSTKFSPWLAHGCVSPKTIYAMLKRY-----------EAENGANDS- 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIYFELLWREYF 282
>gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
Length = 435
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 146/312 (46%), Gaps = 37/312 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR+DLR+ DN +L A ++L +YC +PR + + + G + F+ ES+
Sbjct: 4 ALLWFRHDLRLDDNPALLRAAQAKEALLCLYCIEPRWFVADNWQSRRVGDHPWRFISESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL L+A G LV+R+G P T++ L + D + +E + ++ + +
Sbjct: 64 LDLANRLEALGQQLVIRIGDPNTLIPGLMRNHWIDKLICTAPFGEEERRQYLALKQEVGE 123
Query: 246 EGIEVKYFWGS-TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
EV W S TL+ L+ LPF L E+P + FR +V+ +E R + +L
Sbjct: 124 HRCEV---WQSHTLFTLEQLPFALDELPPTFSQFRRRVQRLEWRPLYPPVTEL------- 173
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
P L L S P +GG+T A L + A PK K
Sbjct: 174 -------PKPLALT---SETPPPVSTPPNPQYQGGQTAAEAHLAHYLA---GAAPKHYKQ 220
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
+++ + S K+SPWLA GCLS R+ +L+ + + G++ + + W
Sbjct: 221 -TRNALDDWSSSTKLSPWLAQGCLSARTAVAQLEAY-----------EAQHGANES-TEW 267
Query: 425 LMFELLWRDFFR 436
+ ELLWR++F+
Sbjct: 268 IQVELLWREYFQ 279
>gi|335043044|ref|ZP_08536071.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
gi|333789658|gb|EGL55540.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
Length = 441
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 33/315 (10%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + + W ++DLR+HDN +L A+ ++ +YCFDP + +S G R FL
Sbjct: 1 MYKTGLYWIQHDLRIHDNAALLEASLNCEQLICLYCFDPTWFRQSRLNARSMGVVRRQFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+++ DL K L++RG L+V P + + L K DAVY V E + ++
Sbjct: 61 NKTLHDLGKELKSRGQRLIVMTADPVSAISVLIKNHDIDAVYRSHHVGVFETRQWHHLKV 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
W TL+ + LPF + ++P + F+E + + I K + A+ Q P
Sbjct: 121 DFPRTVFHS--VWTHTLFRPEQLPFSINDLPATFTDFKEFCETIAIDKPL-AMPQWLAPP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ GLS G GGE AL L+++ + + P
Sbjct: 178 VKALT-----------GLSHQTETDYGELIKGF---GGEKTALDHLEQY---FSSDLP-A 219
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
N + + G S K+S WLA G LSPR + LK+ T +A
Sbjct: 220 NYKTVRNELDGWENSTKMSAWLACGALSPRKLVARLKRYETEKTA------------NES 267
Query: 422 SNWLMFELLWRDFFR 436
+ W+ +ELLWR++F+
Sbjct: 268 TYWIYYELLWREYFQ 282
>gi|376317003|emb|CCG00379.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteriia
bacterium]
gi|376317044|emb|CCG00419.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteriia
bacterium]
Length = 415
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 29/305 (9%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
+R+ DN SL+ A N S ++ DP+++ + GF KT YRA FL+E++SDL+ L
Sbjct: 1 MRIEDNISLSKAINNSDNIFAFINIDPKNFLLTKYGFKKTEKYRAKFLLETISDLKSQLD 60
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
L++ + + E+ +Y E + DE+K E+ + DE +K F
Sbjct: 61 TLNISLIITHKDFDKSIKEIINNYEITNIYTQTEWTRDELKE----ESFIPDEINLIKDF 116
Query: 254 WGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIP 312
L+ +D+ +P + FR+K K + + T+ + L P + IP
Sbjct: 117 -DQFLFSPNDVKGLYDNIPRGFSNFRKKCEKYLSVNDTLSIPNSLN--PDNKILFDYSIP 173
Query: 313 SLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQPPKGNKDGNHDSIY 371
+L DLG K + KGGET A R+K + + + K ++G +
Sbjct: 174 TLSDLGFEDFDV----HKDSVFRFKGGETNAKDRIKNYFFDTRNVSRYKLTRNG----LI 225
Query: 372 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 431
G ++S K SPWLA G +S + +F LK+ T + ND + WL FEL+W
Sbjct: 226 GEDYSSKFSPWLANGSVSVKYIFKLLKEYETKVEK----ND--------STYWLYFELIW 273
Query: 432 RDFFR 436
RDFF+
Sbjct: 274 RDFFK 278
>gi|225011847|ref|ZP_03702285.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
gi|225004350|gb|EEG42322.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
Length = 433
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 140/314 (44%), Gaps = 23/314 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++VW RNDLR D S TA E V+ + F+P+DY K+ GF KTG +R FL+E
Sbjct: 2 KTALVWLRNDLRFEDQNSFFTACQEHERVVAYFSFEPKDYDKTMWGFTKTGKFRTHFLLE 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ L+ L+ + L+V T + + A A++ E + +E + + +
Sbjct: 62 TLRSLQTELENKNISLIVENRSAATGIPFWLDQLKATALFFQEEWTFEEKMISDAVVNQI 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
++ I V + LYH +D+ ++ +P + FR+K K IR A L S
Sbjct: 122 SND-INVYSHYDQFLYHPEDVSMEIQSIPKVFTEFRKKCEKFSNIRPCFSAPKVLN--KS 178
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
E +P L D + + P M G + LQ F + K
Sbjct: 179 SLLSETPAMPVLEDFEFTPFTHHANSAFPFKGGMVSG-NDHLQNY--FWNTKRLSYYKQT 235
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + G +S K SPWLA G LS R ++ E+ + + +
Sbjct: 236 RNG----LVGVGYSSKFSPWLANGSLSARVIYWEVMRYEKEV------------KKNEST 279
Query: 423 NWLMFELLWRDFFR 436
WL+FELLWRD+F+
Sbjct: 280 YWLIFELLWRDYFK 293
>gi|393216926|gb|EJD02416.1| cryptochrome, partial [Fomitiporia mediterranea MF3/22]
Length = 509
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 166/354 (46%), Gaps = 61/354 (17%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDY----------------GKSS 167
I R+DLR+ DN + +T N ++P++ +P Y +S
Sbjct: 3 IYILRHDLRLADNPVFTAASTTNATFTHLIPLFILNPTQYEISGFLKPDEKSPFPEARSR 62
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-GAD----A 221
G F + GPYRA FL ES+ DL+K+LQ GSDLV+R G+ V+ ++ K++ G D A
Sbjct: 63 LGQFWRCGPYRAKFLAESLFDLKKSLQCVGSDLVIRTGEAHDVIGKMIKSLNGGDSEVKA 122
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG-STLYHLDDLPFKLGEMPTNYGGFRE 280
V+ R+ + +E E KI + G+ + F STL +D+P+ ++P + F++
Sbjct: 123 VWMTRDFAAEEFDEERKIRKTLP-PGVSFRAFSDESTLISKNDVPYTAADLPDVFTSFKK 181
Query: 281 KVKGVEIRKT--IEALDQLKGLPSR--GDVEPGDIPSLLDLGLSQSAAMSQ--------- 327
V+ + I+ + + +P+ + P IP LD +S A+ Q
Sbjct: 182 SVEPLRSNAGMPIQNIPSIPPIPNDIPAQLHPFIIPKTLDDLIS---ALQQPLFNKPDIP 238
Query: 328 -----GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPW 382
G +A+ KGG T A RL + K ++G + G +FS K+S +
Sbjct: 239 LPAFPEGSFSAHPFKGGSTAARARLSHLISSDAVSTYKDTRNG----LIGWDFSTKLSAY 294
Query: 383 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
LA GC+S + LKK ++NDG+ G+ + FELLWRD+ R
Sbjct: 295 LAYGCISAGQVHAALKKW------EDEFNDGQENK---GTTAIRFELLWRDYMR 339
>gi|359483005|ref|XP_002285327.2| PREDICTED: (6-4)DNA photolyase [Vitis vinifera]
Length = 564
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 155/339 (45%), Gaps = 39/339 (11%)
Query: 111 HRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKS 166
HRP PN A +S++WFR LR+HDN +L A ES V PV+ DP D
Sbjct: 18 HRPNSPNPSMASGSSSLMWFRKGLRIHDNPALQHAAKESNCVYPVFVIDPYFMEPDPNAF 77
Query: 167 SSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226
S G + G R FL+ES+ DL +L+ GS L+V G P V++ K +
Sbjct: 78 SPGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEY 137
Query: 227 EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV 285
+ + K++ GIEV TL+ ++ K G P +Y F K+ G
Sbjct: 138 DTDPYYQALDIKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFL-KLAGQ 196
Query: 286 EIRKTIEALDQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETE 342
+ L L LP GDV E ++P++ +LG + G+ + KGGE+E
Sbjct: 197 PSWASSPLLTTLSWLPPVGDVGTCEISNVPTVKELGYEEI------GQDESTPFKGGESE 250
Query: 343 ALQRL------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 396
AL+RL K++ A ++ PKG+ S + + +SP+L GCLS R +
Sbjct: 251 ALKRLRESIRDKEWVANFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYQC 303
Query: 397 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
L T + KW+ S L+ +LLWRDFF
Sbjct: 304 L----TDVYKNMKWHTSPPVS-------LVGQLLWRDFF 331
>gi|410621443|ref|ZP_11332290.1| cryptochrome DASH [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410158958|dbj|GAC27664.1| cryptochrome DASH [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 439
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 149/327 (45%), Gaps = 45/327 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDK---TGPYRAS 179
++ + WFR DLR+ DN SL ++ ++ VY + P S + K G +R +
Sbjct: 3 KKVGLHWFRKDLRIQDNASLAELASQVDELVCVYVYQPEANQDSINELHKKESIGKHRLN 62
Query: 180 FLIESVSDLRKNLQARGSDLVV---RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
F+ +++ DL L L+V P ++ L KA+ + A +E K
Sbjct: 63 FIHQTLHDLNSTLSDFNQRLIVLSTNKADPVEAILTLVKALNVTHLSAQWHCGFNERKEW 122
Query: 237 EK-----IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKT 290
++ IEA + E I+V STL+++ PF + MP + FR+KV K E++
Sbjct: 123 QQTQDLVIEAGLNIEFIQVN---SSTLFNVSQFPFSIENMPNTFSPFRKKVEKYCEVQAI 179
Query: 291 IEALDQLKGLPSRGDVE-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK 349
L+ L +P +E D+ SLL + ++ +S GGE +A Q+L
Sbjct: 180 NPVLNALPSIPDLFTIENVMDLDSLL-VSVNHYQRLS-----------GGENDAHQQLTH 227
Query: 350 FA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ + K ++G + G +FS K S WLA+GC+SPR ++ EL + +
Sbjct: 228 YLWSTDHISRYKETRNG----LDGWDFSSKFSAWLALGCISPRQIYAELCRYES------ 277
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
+ WL FELLWR+FF
Sbjct: 278 ------ERVKNESTYWLFFELLWREFF 298
>gi|345867345|ref|ZP_08819359.1| cryptochrome DASH [Bizionia argentinensis JUB59]
gi|344048275|gb|EGV43885.1| cryptochrome DASH [Bizionia argentinensis JUB59]
Length = 412
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 31/289 (10%)
Query: 152 VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLV 211
V+ +YCF+P+DY +S GF KT +RA F IESV DL+ L+ L KPE +
Sbjct: 11 VIAIYCFNPQDYENTSFGFKKTEKFRARFTIESVHDLKIQLETLNIPLFTVHEKPELAIS 70
Query: 212 ELAKAIGADAVYAHREVSHDE--VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG 269
L + V+ +E + +E + K++ + EV + L+ DD +L
Sbjct: 71 SLCEKYHITDVFVQKEFTQEETNIIDAVKLKTSQNSNWHEV---YDQFLFQPDDGLRQLN 127
Query: 270 EMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQG 328
++P + FR+ + K +R I Q + + + E IP+L LG S+ +
Sbjct: 128 KIPKVFTNFRKILEKECSVRPLITPEKQ-ELFEIKNNTE---IPTLKTLGFSEFETHAHS 183
Query: 329 GKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCL 388
P GGET A RL + E G + + G ++S K S WLA GC+
Sbjct: 184 AFP----FSGGETAAQNRLYNYVFE---TKKIGFYKKTRNGLLGVDYSSKFSAWLANGCI 236
Query: 389 SPRSMFDELKKTATSISAASKWNDGESGS-SGAGSNWLMFELLWRDFFR 436
S R ++ ++ D E + WL+FEL+WRDFF+
Sbjct: 237 SARQIYWAIQ-------------DFEKEHFKNQSTYWLIFELIWRDFFK 272
>gi|336451493|ref|ZP_08621930.1| cryptochrome, DASH family [Idiomarina sp. A28L]
gi|336281306|gb|EGN74586.1| cryptochrome, DASH family [Idiomarina sp. A28L]
Length = 484
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 164/355 (46%), Gaps = 63/355 (17%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFR +LRV +N +L A +++ L V+C+D + Y + G + P RA FL ESV
Sbjct: 9 LVWFRRNLRVANNPALEAAADSQHAKPLGVFCYD-QQYTGTWLGMPRCAPLRAKFLWESV 67
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL++ LQ G +L+V+ +PET+L +L + + V+ R +H+EV + E++ A+
Sbjct: 68 QDLQQQLQQMGGELIVQAEEPETLLPKLCQELNITHVHTQRLFAHEEVAAAERVLQALNA 127
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV----KGVEIRKTIEALDQLKGLP 301
G+ TL ++ + ++ FR KV + + +R ++ Q +
Sbjct: 128 IGVTFVQHECYTLLAEAEVYERHTSPLGSFSKFRRKVAPDTQAITLRLNPLSVSQTSAVA 187
Query: 302 -----SRGDVEPGDIPSLLDLGLSQ------------------SAAMSQGGKP------- 331
+R + EP + L Q + A G +
Sbjct: 188 QENAVARENAEPQENGVWHQLLAHQKQTPRTRENTAAENIIENAVAQENGARHHSLKQSP 247
Query: 332 -AANS---------MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISP 381
A N+ KGGET +RL+ +AA G+ + + GA++S K+SP
Sbjct: 248 IAINADTDSRSVLPFKGGETAGQRRLQDYAA-----SAVGHYKETRNGLIGADYSSKLSP 302
Query: 382 WLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
WL +GC+SP + +++ + E G++ A + WL+ ELLWRDFF+
Sbjct: 303 WLNLGCISPAQVLQAVREY-----------EAEHGAN-ASTEWLIVELLWRDFFQ 345
>gi|388256896|ref|ZP_10134076.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
gi|387939100|gb|EIK45651.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
Length = 430
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 152/323 (47%), Gaps = 41/323 (12%)
Query: 124 RASIVWFRNDLRVHDNESLN--TANNE---SVSVLPVYCFDPRDYGKSSSGFDKTGPYRA 178
R +I WFR DLR+HDN + ANN+ V VLP P Y + S G +R
Sbjct: 2 RKAIYWFRYDLRLHDNPGWSQLVANNDWVIGVYVLPDRWLRPLRYQQKSLGI-----HRQ 56
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
FL+ES+ LR+ L+ +GSDL+V VG P T L L + A+ DE + E+
Sbjct: 57 HFLLESLQQLRQQLRTQGSDLIVVVGDPATALTGLVERWNVSAMATGEYPGSDEQRDVER 116
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + I ++ TL+ +LPF L ++P + FR K VE R L +
Sbjct: 117 LRDMLD---IPLRCHENFTLFDRAELPFALADLPLIFSQFR---KLVEARPCSMPLPRAP 170
Query: 299 GLPSRGDVEPGDIPSLLD--LGLSQSAAMSQGGKPAANS---MKGGETEALQRLKKFAAE 353
L R V D P LD LG+ ++ + Q PA N GG T L +L+ F E
Sbjct: 171 NL--RQPVVLEDSPCELDQWLGIMRAQQLVQ---PADNRRLPFHGGSTAGLAQLQYFLGE 225
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
++ N + + G +FS K+SPWLAMGCLS R +K
Sbjct: 226 HKL---ISNYKNTRNGLDGWDFSSKLSPWLAMGCLSARQAVRAIKDYE------------ 270
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
++ + S WL FELLWR++F+
Sbjct: 271 QAHGANESSYWLYFELLWREYFQ 293
>gi|297582918|ref|YP_003698698.1| DASH family cryptochrome [Bacillus selenitireducens MLS10]
gi|297141375|gb|ADH98132.1| cryptochrome, DASH family [Bacillus selenitireducens MLS10]
Length = 478
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 150/324 (46%), Gaps = 33/324 (10%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+R +++WFR+DLR+HD+E L A+ V+ D R K + G + G +R FL
Sbjct: 1 MRMVNVIWFRHDLRIHDHEPLRLAHWAKEETEAVFVRDARMDEKVTPGLKRAGEHRERFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES+ L +L+A G V G +++ GA V+ H +E + E+++
Sbjct: 61 MESLVVLAGSLEAEGMPFTVLKGPVVKTMIDWLTERGATDVFLHEHPGFEERRDLEEVQR 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG---VEIRKTIEALDQLK 298
A+ V G T++ D LPF E P ++ FR++++ + +K + D
Sbjct: 121 ALPHIHWHVSE--GHTMFRRDQLPFSFSEFPMSFTMFRKRLEAHLRLPEKKRSFSYDSYD 178
Query: 299 GLPSRGDV-----EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
+ V E G ++ G A QG ++GGE EAL RL+ +
Sbjct: 179 TVTEAEPVFLSGKESGSFGAVRGSGDHIPHAGGQG------IVRGGEQEALARLRSYVGN 232
Query: 354 Y-QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+ K +DG ++ + S K+S WLA G LSP+ ++ + + AA+ N+
Sbjct: 233 ASRLFTYKETRDG----MFAFDDSSKLSFWLANGSLSPKRVY----RAILDMEAANGRNE 284
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
S WL FELLWR++F+
Sbjct: 285 --------SSYWLFFELLWREYFQ 300
>gi|441503036|ref|ZP_20985043.1| Cryptochrome [Photobacterium sp. AK15]
gi|441429252|gb|ELR66707.1| Cryptochrome [Photobacterium sp. AK15]
Length = 435
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 139/307 (45%), Gaps = 33/307 (10%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
F+NDLR+HDN +L A E ++ +YC + G R FL++S++DL
Sbjct: 8 FQNDLRLHDNPALALAAKEVNELICIYCLPQHKANMLPYSVTQLGTQRQQFLLQSLTDLN 67
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
+ L LV+ + P +L EL A+Y + E +S + ++ + ++
Sbjct: 68 RQLNQCRQHLVILLDHPLNILPELITQYNVSALYRSQHAGFYENQSWQILKK--RYPYLQ 125
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPG 309
TL+ +LPF + ++P + FR++V+ I+K + +L LPS P
Sbjct: 126 FTTVASHTLFDQPELPFDIEDLPPTFSKFRKQVENHPIQKPMR---RLTSLPS----PPN 178
Query: 310 DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDS 369
+P +S ++ GGE L L + A K + ++
Sbjct: 179 TLPKF--------DVISPLLTHHSSEFTGGEEAGLSHLTAYFASRHPSHYKLTR----NA 226
Query: 370 IYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFEL 429
+ G S K+SPWLA+GCLSPR++ + L+ + E SS + W+ FEL
Sbjct: 227 LDGWENSTKLSPWLALGCLSPRTLIERLEIYHQQV---------EQNSS---TEWIKFEL 274
Query: 430 LWRDFFR 436
LWR++F+
Sbjct: 275 LWREYFQ 281
>gi|410861787|ref|YP_006977021.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii AltDE1]
gi|410819049|gb|AFV85666.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii AltDE1]
Length = 435
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 148/318 (46%), Gaps = 29/318 (9%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRA 178
G++ + + WFR+DLR+HD ++ V Y D + + ++ GF G +R
Sbjct: 10 GSSDVQRGVFWFRHDLRLHDQPAIAELCTAVSQVTFTYILDDKCFDDAAFGFSPMGKHRH 69
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
+FL++++SDL++ L RG +L++ G +V+L A G + + DE
Sbjct: 70 TFLLQTLSDLKQQLNQRGHELLILKGNTAECIVQLLNAGGYTHLGVSQHCGFDETAQLNT 129
Query: 239 IEAAMKD-EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++ IE F L+ + LPF + MP + FR KV+ + + L+++
Sbjct: 130 VKRFFNTLRVIETPTF---GLFDAEVLPFDIEGMPDVFSPFRRKVE--KHCTPLPVLERI 184
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
LP G + D +LD+ LS KP+ +S GGE+ AL L+ + +++A
Sbjct: 185 AQLPD-GFMPNIDKQYILDIELSLP-------KPSPSSFIGGESAALNHLETYLFDWKAA 236
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
D+ S K+S WLA G LS R + ++++ +I ND
Sbjct: 237 ATYKETRNTLDTWKD---STKLSAWLANGSLSAREVIRQVQRFEQTIEK----ND----- 284
Query: 418 SGAGSNWLMFELLWRDFF 435
+ W+ FELLWR+FF
Sbjct: 285 ---STYWVYFELLWREFF 299
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 145/310 (46%), Gaps = 39/310 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR DLR+ DN +L A + V+PV+ FD + TG R +FL+ES+
Sbjct: 6 LCWFRRDLRLDDNTALLAAYAAAEEVVPVFIFDDAILSRPD-----TGAVRVAFLLESLR 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L +NL+ARGS L++R G+PE VL +L A AVY +R+V + + ++ A ++
Sbjct: 61 NLDENLRARGSRLLLRRGRPEHVLAQLVTETAASAVYFNRDVEPFALARDARVRAHLEGR 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
V+ F L + + K G T + +R+ V I + A L+ + DV
Sbjct: 121 -CAVEGFDDGGLTAPEAVRTKAGTPYTVFTPYRQAVLAQPIPRPRLAPAMLR---TPADV 176
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
PSL DLG + S + GGET A RL+ F A +
Sbjct: 177 PSDPWPSLKDLGFATS----------VSPPPGGETSAQARLQGFIQNGLA------RYAT 220
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
+ A+ + ++SP+L GCLSPR + ++ GS G S W+
Sbjct: 221 ERDVLSADGTSRLSPYLRFGCLSPRRAYWAAREAV------------PEGSPGMES-WIA 267
Query: 427 FELLWRDFFR 436
EL+WRDF+R
Sbjct: 268 -ELIWRDFYR 276
>gi|424039979|ref|ZP_17778239.1| cryptochrome DASH [Vibrio cholerae HENC-02]
gi|408892368|gb|EKM29890.1| cryptochrome DASH [Vibrio cholerae HENC-02]
Length = 450
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 146/319 (45%), Gaps = 53/319 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR------DYGKSSSGFDKTGPYRASF 180
+ WF NDLR+HDN +L A E ++ +YC+ P+ Y ++S + G + F
Sbjct: 7 LYWFTNDLRLHDNPNLAKAAEEVDFLICLYCY-PKVSPFLAHYAQTS----ELGQPKRQF 61
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L ES+ L +L A L+V P L K +G +Y DE EKI+
Sbjct: 62 LDESLHCLNLSLNALEQRLLVVDLHPYQALKHALKNLGVTRLYVDAMPGCDEQSVIEKIK 121
Query: 241 AAMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
A + + EV+ +L+ L DLPF L +P + FR++V+ + I + I+ +
Sbjct: 122 AEERHVAVVQHEVR-----SLFRLADLPFSLNALPDTFTQFRKQVEKLSISQPIDRVSTF 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQ-SAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
LP GLS + ++++ KP GGE L+ +++ A
Sbjct: 177 PPLPK---------------GLSLPTLSLTRDLKPMP--FAGGEHAGLEHCRRYFDSPLA 219
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
K ++G + G ++S K SPWLA GC+S + + D LK+ A ND
Sbjct: 220 SEYKQTRNG----LDGMDYSTKFSPWLAHGCVSAKRIVDMLKRYEADYGA----ND---- 267
Query: 417 SSGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 ----STYWIYFELLWREYF 282
>gi|90415708|ref|ZP_01223642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC2207]
gi|90333031|gb|EAS48201.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2207]
Length = 447
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 143/318 (44%), Gaps = 27/318 (8%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + WF +DLR+ DN +L A E ++ +YC D + G K P R FL
Sbjct: 1 MQKVGLFWFNHDLRMDDNAALVLAAAEVDKLICLYCADTTNTGPGWQQPAKLSPRRREFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ DL L G LVVR+ P + +L +Y+ V E +I
Sbjct: 61 FESLQDLETQLSQYGQKLVVRIQPPLEAIAQLITVHNVSHLYSANHVG----SYENRIWN 116
Query: 242 AMKDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA-LDQLK 298
++ +E TL+ LPF + ++P ++ FR ++ +++ I A LD +
Sbjct: 117 TLRKRYPMLEFNQSHTHTLFAPSQLPFTIDKLPASFSKFRRLIEKMDLDSVISAPLDAPE 176
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
LP V DI S+ + PA KGG + + LK + A+ A
Sbjct: 177 KLPPPASV--ADIAWQPLWRDHYSSNLDGDDSPAL--FKGGASAGEEHLKGYFAKDLASS 232
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K SPWLA G LSPR + +L++ A ND
Sbjct: 233 YKQTRNG----LDGMDYSTKFSPWLANGTLSPRRIVQQLQEYEARAGA----ND------ 278
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 279 --STYWIFFELLWREYFQ 294
>gi|387127435|ref|YP_006296040.1| Cryptochrome [Methylophaga sp. JAM1]
gi|386274497|gb|AFI84395.1| Cryptochrome [Methylophaga sp. JAM1]
Length = 437
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 142/311 (45%), Gaps = 38/311 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESV-SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WF NDLR+ D +L +SV ++ V+C DP+ + + G R FL+ES+
Sbjct: 5 LFWFTNDLRLQDQPAL--WKMQSVDKLICVFCLDPQWFRPNGLNAKAMGERRFQFLVESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL++ LQ G L+++ P L EL D + + E + + ++ D
Sbjct: 63 KDLQQQLQHAGQVLIIKQQTPHLALTELINKYNVDIIARSQHAGVYENRHWKLLQQQFPD 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ TL+ DDL F+L ++PT++ FR++V+ + + + + + QL P
Sbjct: 123 RKFITEP--SHTLFSADDLSFQLNQLPTSFTQFRKQVEDLALPRPMSSPQQLPPPPGPIA 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
++ + P L +P+ GGET AL+ + +Y + N
Sbjct: 181 IDEINQPVL---------------EPS--KFTGGETAALKHIN----DYFSTDLPANYKT 219
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + G S K SPWLA+GCLS R + LK N ++ S + W+
Sbjct: 220 VRNELDGWTNSTKFSPWLALGCLSVRHLAARLK------------NYEQTNVSNDSTYWI 267
Query: 426 MFELLWRDFFR 436
FELLWR++F+
Sbjct: 268 YFELLWREYFQ 278
>gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudoalteromonas atlantica T6c]
Length = 445
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 152/318 (47%), Gaps = 33/318 (10%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
+A+ + I WFR+DLR+HDN +L + + +L V+ DPR + S G R +
Sbjct: 6 SALPKRGIFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSSHFQSAHMGDKRWA 65
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL +S+S+L+++LQ +G L V G+ VL L + D V + E + +++
Sbjct: 66 FLQQSLSELQRHLQEQGQQLFVLEGETLEVLDALIGSYTPDIVASGMHPGVYERQQWQRV 125
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
+ + + G +L+ LPF++ +P ++ FR++V+ +++
Sbjct: 126 KQGNPNTLFIQEN--GHSLFQPATLPFEIEYLPASFTPFRKRVEDLQV------------ 171
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLK-KFAAEYQAQP 358
+ P +P DL S ++ K + GGE AL +L+ + +
Sbjct: 172 --AVALPAPTALPPAPDLAWLSSKNVNPPKKAIGLAFTGGEDAALAQLEYTLFTSHNIKN 229
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K+SPWLA GCLS R +F EL++ + ND
Sbjct: 230 YKQTRNG----LDGWDYSSKLSPWLANGCLSVRQVFTELRRYESEYEK----ND------ 275
Query: 419 GAGSNWLMFELLWRDFFR 436
+ WL FELLWR++F+
Sbjct: 276 --STYWLYFELLWREYFQ 291
>gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
Length = 443
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 33/313 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF NDLR+HDN L+ A S+L VY +P+ + G R FL++++
Sbjct: 5 ALYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPKKQQFNRYQLISVGEIRHRFLLQAL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+ NL G L+V P + L + G + +Y R E + ++
Sbjct: 65 QALQSNLATLGQRLLVMQADPMVSMPVLIEQYGINLIYRSRHCGWYEQQQWCYLKQCYPH 124
Query: 246 -EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSR 303
+EV TLY D LPF L +MP +Y FR+++ + V + I D LP +
Sbjct: 125 LRFVEVD---THTLYSQDQLPFPLLDMPKSYSKFRKQIEQNVTVSSPILVPDY---LPPQ 178
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
+V + + + +S + + GGE AL L+++ + ++ P K
Sbjct: 179 PNVFCSEYLDIRHVHISDNDQV---------EWHGGENAALMHLQQY---FSSRLPSSYK 226
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ ++I G N S K SPWLA G +S + + L+ + + +
Sbjct: 227 E-TRNAIEGWNNSTKFSPWLACGAISAKMIMARLQDYE------------KYKEKNSSTY 273
Query: 424 WLMFELLWRDFFR 436
W+ FELLWR+FF+
Sbjct: 274 WIFFELLWREFFQ 286
>gi|407683883|ref|YP_006799057.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245494|gb|AFT74680.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
Length = 435
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 148/318 (46%), Gaps = 45/318 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR+DLR+HDN ++++ V +Y D + + ++ GF G +R +FL++++
Sbjct: 18 LYWFRHDLRLHDNAAISSLCEAVQQVTFLYILDDKAFTPTTYGFAPMGKHRHTFLLQTLV 77
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL++ L G DL++ G P LV+L K+ Y+H VS + +E+ +
Sbjct: 78 DLKRQLAKLGHDLLIVKGDPAECLVQLMKS----GQYSHLGVS-EHCGFDERAQLNT--- 129
Query: 247 GIEVKYFWGST---------LYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
VK F+ S L+ LPF + EMP + FR KV+ + K + +
Sbjct: 130 ---VKRFFDSVTVIETPTFGLFDAQTLPFNIKEMPDVFSPFRRKVE--KHCKPLSVHPPM 184
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
+ LPS P S L A + P+ +S GGET AL L + +++A
Sbjct: 185 ESLPS--PFTPQLDESFL------FAIDTDLPSPSQSSFVGGETAALTHLNTYLFDWKAA 236
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
+ D+ S K+S WLA G LS R + ++++ ++ ND
Sbjct: 237 ATYKDTRNALDTWQD---STKLSAWLANGSLSAREVIRQVQQFEATVEK----ND----- 284
Query: 418 SGAGSNWLMFELLWRDFF 435
+ W+ FELLWR+FF
Sbjct: 285 ---STYWIYFELLWREFF 299
>gi|224002573|ref|XP_002290958.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972734|gb|EED91065.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 420
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 139/288 (48%), Gaps = 46/288 (15%)
Query: 172 KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA--------VY 223
K GP R F +E+V+DLR NL+ RGS LVV VG PE +L +A + + V
Sbjct: 4 KCGPRRVQFALEAVADLRSNLEKRGSGLVVAVGNPEEILATIATSAVESSGDNGALINVV 63
Query: 224 AHREVSHDEVKSEEKIEA----AMKDEG-IEVKYFWGSTLYHLDDLPFKLGE--MPTNYG 276
EV +E+ ++ I + AMK + + WGST+Y + LPF G +P +
Sbjct: 64 CQEEVCSEELTVDKAIRSSLAKAMKTKSKFNFETVWGSTMYDPETLPFDGGVFGIPDTFT 123
Query: 277 GFREKVKGV-EIRKTIEA-LDQLKGLPSRGDVEPGDIPSLLDLGL------SQSAAMSQG 328
FR KV+ + EI ++ D+ LP +P+L DLG S S+ S+
Sbjct: 124 PFRNKVEKICEIGAPLDCPKDEYLSLPK------NYMPTLFDLGYNAEDIESVSSVDSRT 177
Query: 329 GKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCL 388
P + +GGET ALQR+K + + K D + + G+++S K +PWLA+G +
Sbjct: 178 ALPV--NYRGGETFALQRVKDYI--WDKNLLKVYFD-TRNGMIGSDYSTKFAPWLALGNV 232
Query: 389 SPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
SPR + E + E + W++FELL RD F+
Sbjct: 233 SPRYIARECSRYE------------EQRVQNKSTYWVVFELLIRDHFK 268
>gi|406596892|ref|YP_006748022.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
gi|406374213|gb|AFS37468.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
Length = 435
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 145/320 (45%), Gaps = 47/320 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR+DLR+HDN +++ V +Y D + + ++ GF G +R +FL++++
Sbjct: 18 LYWFRHDLRLHDNAAISALCEAVQQVTFLYILDDKAFTPTTYGFAPMGKHRHTFLLQTLV 77
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS-HDEVKSEEKIEAAMKD 245
DL++ L G DL++ G P LV+L K+ Y+H VS H ++ A
Sbjct: 78 DLKRQLAKLGHDLLIVKGDPAECLVQLMKS----GQYSHLGVSEHCGFDERAQLNA---- 129
Query: 246 EGIEVKYFWGST---------LYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ 296
VK F+ S L+ LPF + EMP + FR KV+ + K +
Sbjct: 130 ----VKRFFDSVTVIETPTFGLFDAQTLPFNIEEMPDVFSPFRRKVE--KHCKPLSVHPP 183
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
+ LPS P S L A + P+ +S GGET AL L + +++A
Sbjct: 184 MDSLPS--PFTPQLDESFL------FAIDTDLPSPSQSSFVGGETAALTHLNTYLFDWKA 235
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
+ D+ S K+S WLA G LS R + ++++ ++ ND
Sbjct: 236 AATYKDTRNALDTWQD---STKLSAWLANGSLSAREVIRQVQQFEATVEK----ND---- 284
Query: 417 SSGAGSNWLMFELLWRDFFR 436
+ W+ FELLWR+FF
Sbjct: 285 ----STYWIYFELLWREFFH 300
>gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
Length = 447
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 138/315 (43%), Gaps = 34/315 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R + WF NDLR+ DN +LN A +++ VY DPR Y + G GP R FL E
Sbjct: 9 RVGVFWFSNDLRITDNAALNYAAQSCETLICVYILDPRLYAPNRYGLRSMGPMRDRFLQE 68
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L +L A G L+V P + +L V R+ E K ++
Sbjct: 69 SLAQLSVDLNAVGQTLLVLRESPLQAMAQLIGKYDPGLVVRSRQAGFYEYKQWAMLQRRY 128
Query: 244 KDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLP 301
+ I K TL++ +D LPF L ++P + FR+KV+ + +IR + D LP
Sbjct: 129 R--LISFKDIATHTLFNDEDLLPFPLTDLPKTFSQFRKKVEPLADIRNLLPVCD----LP 182
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
D +L QS ++ KGG +Q+L+ + + P
Sbjct: 183 PPPRGLKRDHTFRRELLKHQSRSI----------FKGGAEAGIQQLQGY---FHTTAPSE 229
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
K +++ G S K+SPWLA GCLS + L + SA
Sbjct: 230 YKT-VRNALDGWGNSTKLSPWLANGCLSVNQVLLALGEYEAQYSA------------NES 276
Query: 422 SNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 277 TYWISFELLWREYFQ 291
>gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
Length = 477
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 140/331 (42%), Gaps = 39/331 (11%)
Query: 125 ASIVWFRNDLRVHDNESL---NTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++WF +DLR+HDN L N NN +L +YC D + + G + +R +FL
Sbjct: 10 TTLLWFTHDLRIHDNALLFYANKINNNKHRLLCLYCIDEEWFEQDRFGLQRIATHRWNFL 69
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ S+ L LQA G LV+ G P ++ +L + V + V ++E ++I
Sbjct: 70 VGSLHALNTELQALGQQLVIAKGNPTEIISDLLSRYSINTVISSNTVGYNEQAYWQEISN 129
Query: 242 AMKDEG-IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
I+ + F TL+ LPF L +P N+ FR ++ + LD +K
Sbjct: 130 KYPHLAFIQQETF---TLFAESQLPFLLNNLPDNFSKFRRLIEST--KNHPHYLDAIK-- 182
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQ-------GGK------PAANSM--KGGETEALQ 345
S +P +P L + L + S GK NS+ GGE +
Sbjct: 183 -SSLIGQPTKLPPKLHITLQEEHQFSWPRTSTIPNGKNNHDINANKNSLGFYGGEASGIS 241
Query: 346 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
LK++ + K ++ S K SPWLA G LS R + L +
Sbjct: 242 HLKQYFSTNAPSHYKDTRNALGCEKEEWQLSSKFSPWLANGSLSARYIVQMLSRYE---- 297
Query: 406 AASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
E + + W+MFELLWR++F+
Sbjct: 298 --------EENGANDSTYWIMFELLWREYFQ 320
>gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
Length = 443
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 139/312 (44%), Gaps = 33/312 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WF NDLR+HDN L+ A S+L VY +P+ + G R FL++++
Sbjct: 6 LYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPQKQQFNRYQLVSVGEIRHRFLLQALQ 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD- 245
L+ NL G L+V P + L + G + +Y R E + ++
Sbjct: 66 ALQSNLATLGQRLLVMQADPMLSMPVLIEQYGINLIYRSRHCGWYEQQQWRYLKQCYPHL 125
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
+EV TLY D LPF L +MP +Y FR+++ + V + + D LP +
Sbjct: 126 RFVEVD---THTLYSQDQLPFPLSDMPKSYSKFRKQIEQNVTVSSPLLVPDY---LPPQP 179
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
+V D + + +S + + GGE AL L+++ + + P K+
Sbjct: 180 NVFCSDYLDIRHVHISDNDQV---------EWHGGENAALMHLQQY---FSSSLPSNYKE 227
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
++I G + S K SPWLA G LS K ++ K+ + S + W
Sbjct: 228 -TRNAIEGWDNSTKFSPWLACGALSA-------KMIMATLLDYEKYKEKNSSTY-----W 274
Query: 425 LMFELLWRDFFR 436
+ FELLWR+FF+
Sbjct: 275 IFFELLWREFFQ 286
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 148/315 (46%), Gaps = 33/315 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
I WFR DLR+HDN +L+TA+ S V+P++ D + +TG R +F+I ++
Sbjct: 4 IHWFRRDLRLHDNPALHTASIRSDGRVIPLFILD-----DAILHAPRTGAARIAFMIAAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ARGS LV+R G+ V+ + + GA V +R+ + + + ++EAA++D
Sbjct: 59 RDLDANLRARGSRLVIRRGRTLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRD 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG---LPS 302
+E + ++ DD+ G T Y +R + + + ++ E L ++ P+
Sbjct: 119 LNVETSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRPA 178
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
V +P DLG+ +SQ P GGET RL F A G
Sbjct: 179 PEAVADQTVPDHADLGI----VVSQRIPP------GGETHGAARLAAFVDLAAAHSIAGY 228
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND--GESGSSGA 420
+G + + ++SP+L GC++PR ++ AA + D G+ +
Sbjct: 229 AEGR--DLLAEPATSRLSPYLRFGCVAPRQ----------ALRAALRLLDIVGDDHRTVR 276
Query: 421 GSNWLMFELLWRDFF 435
+ EL WRDF+
Sbjct: 277 SIETWIGELAWRDFY 291
>gi|452824798|gb|EME31798.1| cryptochrome, DASH family [Galdieria sulphuraria]
Length = 570
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 151/339 (44%), Gaps = 52/339 (15%)
Query: 111 HRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGF 170
HR + NG +I+WFRN+LR+ DN L+ AN +VLP+Y FD R ++
Sbjct: 64 HRVPESLNGGT----AILWFRNNLRLSDNSCLDLANTAE-AVLPLYVFDKRSLVRNRLKQ 118
Query: 171 DKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSH 230
+ GP+R SF+ ESV L+ NL+ SDL+V VG V+ EL + + A + +
Sbjct: 119 QRCGPFRYSFVKESVEQLQNNLRGLFSDLLVEVGTAAEVIRELCAKYSINHIVAPKMIKV 178
Query: 231 DEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
+V +E + A + W TL D+L + E ++ F V + K
Sbjct: 179 SQVATELHLNAC---------FVWDCTLLSFDEL--IVNEYQHSFETFYNSVISKGLPKI 227
Query: 291 IEALDQ-----LKGLPSRGDVEPG---DIPSLL-DLGLSQSAAMSQGGKP---AANSMKG 338
E LD LK LP +P +P L+ DLG+ + P A +G
Sbjct: 228 FE-LDNSQRPFLKPLPF--GYKPSFAIPLPHLVNDLGVENLCTPYEWPFPEPRAVYPFRG 284
Query: 339 GETEALQRLKKFAAE---YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 395
GE A +RL + + Q N G DS S K+SPW+++GC+S R ++
Sbjct: 285 GEDSAKERLTDYFVKKNGLQLIADLENYSGVMDS------STKLSPWISIGCVSVRQVYW 338
Query: 396 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
E ++ ++ S + WL LWRDF
Sbjct: 339 EGYRSYM-----------KNMDSQVANLWLK-RFLWRDF 365
>gi|302918988|ref|XP_003052768.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
77-13-4]
gi|256733708|gb|EEU47055.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
77-13-4]
Length = 640
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 156/347 (44%), Gaps = 47/347 (13%)
Query: 130 FRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRD--------------YGKSSSG--- 169
R DLR DN L TA++ +LPVY P Y K+ S
Sbjct: 11 LRRDLRATDNPILHHLATADHGFTHLLPVYVLPPHQIEVSGFLTENQKSPYPKALSQVGR 70
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----ADAVYA 224
F + GP+RA F ESV DL+ +L+ GS LV+R+G V+ +L +A+ DAV+
Sbjct: 71 FWRCGPHRAKFTAESVWDLKDSLEDLGSGLVLRIGSFSDVVRQLIQALNDNHHSVDAVWM 130
Query: 225 HREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG----FRE 280
+VS +EV ++ + A ++ + K W Y +DD P +L ++ T+Y RE
Sbjct: 131 TEDVSSEEVDDQDAVSAVCSEKSVGFK-LWRDDKYFIDDNPKELPDVFTSYRKTQEPLRE 189
Query: 281 KVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSL-----------LDLGLSQSAAMSQGG 329
+ + R +L L D P +P +D L+ + Q
Sbjct: 190 RPRRSLPRPQAGSLPPLPPWTPPQDA-PFQVPDTYEEFERRLLQPIDYMLANPPVLPQDA 248
Query: 330 KPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 389
K +A+ GGE+ A +RL+ + ++G + G ++S K+S +LA+GC+S
Sbjct: 249 K-SAHPFDGGESFAWERLRHLIRTGGMCTYQETRNG----LLGKDYSTKLSGYLALGCIS 303
Query: 390 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
RS+ +EL K A G G+ + FELLWRD+ R
Sbjct: 304 ARSIHEELLKLEDGTDQAYARARGFDRGENEGTKAVRFELLWRDYMR 350
>gi|358451749|ref|ZP_09162182.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
gi|357224218|gb|EHJ02750.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
Length = 440
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 144/319 (45%), Gaps = 45/319 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN SL A ++S +L +Y DPR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNASL-LAASKSDMLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ G L + G+PETV+ +LA A + V R E + I+ +
Sbjct: 62 MALERSLRTLGQRLHIAFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKDRLPK 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR-------KTIEALDQLK 298
+ F +L+ LP LGE+P + FR++V+ R +T+ AL
Sbjct: 122 AVFQQ--FETLSLFTEGSLPMALGELPDTFSQFRKQVEKTGDRCSERLRIRTLTALPPPP 179
Query: 299 GLP--SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
G P +RGD P IP + GGE L RL++F Y
Sbjct: 180 GFPEDNRGDCPP--IPEPVH----------------PLQFMGGEAAGLARLQEFL--YDN 219
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
K+ +++ + S K SPWLA GCLS R E+ +T T A+ N+
Sbjct: 220 HSIDRYKE-TRNALDTWDASSKFSPWLANGCLSVR----EVAETITEYEASETKNE---- 270
Query: 417 SSGAGSNWLMFELLWRDFF 435
+ WL FELLWR++F
Sbjct: 271 ----STYWLWFELLWREYF 285
>gi|330447966|ref|ZP_08311614.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492157|dbj|GAA06111.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 441
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 134/317 (42%), Gaps = 33/317 (10%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
A+R ++ W DLR+HDNE + + + ++L VY +P+ + G R F
Sbjct: 2 AVR--ALYWLTQDLRLHDNEIFHQVRDHADNLLCVYFIEPQWQTFNRYQLKSMGEIRHRF 59
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L++S+ L NL G LVV +P L L + + +Y R E + + I+
Sbjct: 60 LLQSLQTLHSNLTRFGQQLVVVQAEPLLSLPALIQQHRINVIYRSRHCGWYEQQQWQYIK 119
Query: 241 AAMKD-EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
+EV TLY LPF L +MP+ Y FR+ I + L
Sbjct: 120 QYFPHLRFVEVD---THTLYSQQQLPFHLSDMPSGYSKFRKL-----IERDTNVTKPLPQ 171
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
+ LD+G A S +GGE AL LK++ + P
Sbjct: 172 PEYLPPPPKMNSSDYLDIGRVYIADNSNV------EWQGGENAALMHLKQY---FSCDAP 222
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K+ +++ G S K SPWLA G LS +++ LK +++A S
Sbjct: 223 ANYKE-TRNALAGWELSTKFSPWLACGSLSAKTIMAALKDYEQNVTANS----------- 270
Query: 420 AGSNWLMFELLWRDFFR 436
+ W+ FELLWR+FF+
Sbjct: 271 -STYWIFFELLWREFFQ 286
>gi|424030869|ref|ZP_17770339.1| cryptochrome DASH [Vibrio cholerae HENC-01]
gi|408880647|gb|EKM19568.1| cryptochrome DASH [Vibrio cholerae HENC-01]
Length = 450
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 145/316 (45%), Gaps = 47/316 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR------DYGKSSSGFDKTGPYRASF 180
+ WF NDLR+HDN +L A E ++ +YC+ P+ Y ++S + G + F
Sbjct: 7 LYWFTNDLRLHDNPNLAKAAEEVDFLICLYCY-PKVSPFLAHYAQTS----EFGQPKRQF 61
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L ES+ L +L A L+V P L K +G +Y DE E+I+
Sbjct: 62 LDESLHCLNLSLNALEQRLLVVDLHPYQALKHAFKNLGVTRLYVDAMPGCDEQNVIEEIK 121
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A ++ + V +L+ L DLPF L +P + FR++V+ + I + + + L L
Sbjct: 122 A--EERHVTVVQHEVRSLFRLADLPFSLNALPDTFTQFRKQVEKLSISQPADRVSTLPPL 179
Query: 301 PSRGDVEPGDIPSLLDLGLSQ-SAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P GLS + ++++ KP GGE L+ +++ A
Sbjct: 180 PK---------------GLSLPTLSLTRDLKPMP--FAGGEHAGLEHCRRYFDSPLASEY 222
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K ++G + G ++S K SPWLA GC+S + + D LK+ A ND
Sbjct: 223 KQTRNG----LDGMDYSTKFSPWLAHGCVSAKRIVDMLKRYEADYGA----ND------- 267
Query: 420 AGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 -STYWIYFELLWREYF 282
>gi|350532661|ref|ZP_08911602.1| deoxyribodipyrimidine photolyase [Vibrio rotiferianus DAT722]
Length = 444
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 37/311 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRASFLIES 184
+ WF NDLRVHDN +L A +E ++ +YC+ P+ Y + + G + FL ES
Sbjct: 5 LYWFTNDLRVHDNPNLTKATSEVDLLVCLYCY-PKISSYLAQYAQVSQFGVAKQQFLDES 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L +L L+V + P + + G +Y DE K++
Sbjct: 64 LFCLNSSLNTLKQRLLVVILHPYHAIKHAIENFGVTRLYVSAISGCDEQAVLAKLQVEYP 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
I V +L+ LPFK ++P + FR K VE+ E ++++ LP
Sbjct: 124 H--ISVVQQEAQSLFCSGQLPFKTDDLPDTFTKFR---KQVEVLLISEPVEKVSALPPAP 178
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
+ P I +L +++ KPA S GGE L+ +++ + A K ++
Sbjct: 179 ETLP--ISTL---------NLTRDLKPALFS--GGEQAGLEHCRQYFSSTLASEYKQTRN 225
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + G ++S K+SPWLA GCLSP+++ LK+ + E+G++ + + W
Sbjct: 226 G----LDGMDYSTKLSPWLAHGCLSPKTICGMLKRY-----------EAENGANDS-TYW 269
Query: 425 LMFELLWRDFF 435
+ FELLWR++F
Sbjct: 270 IYFELLWREYF 280
>gi|254506014|ref|ZP_05118159.1| cryptochrome dash [Vibrio parahaemolyticus 16]
gi|219551237|gb|EED28217.1| cryptochrome dash [Vibrio parahaemolyticus 16]
Length = 412
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 134/311 (43%), Gaps = 49/311 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WF NDLR +N L+ A NE ++ VYC +Y + SG G +R F+ +SV
Sbjct: 7 LYWFINDLRRLNNSLLDRAINEVDELVAVYCLPHVTEYLAAFSGEHNLGTHRERFIHQSV 66
Query: 186 SDLRKNLQARGSDL-VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
DL ++L A G +L +V G + V E+ + G +Y DE I+ K
Sbjct: 67 EDLSESLAALGVELNIVEQGTTKAV-AEIIEQRGVSHLYVSEVAGFDETVMINVIK--QK 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+EV +TL+H D LPF L E+P + FR++V+
Sbjct: 124 FPTLEVIQSDNTTLFHSDQLPFPLDELPATFTQFRKQVE--------------------- 162
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
P L SQ A G + GGE A+Q + Y +QP +
Sbjct: 163 -------PIFELLYPSQDALYRLGEIATPTGVVGGERAAIQHV----TWYFSQPFASSYK 211
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
+ + G + S SPWLA+GC+SP + L++ + + + W
Sbjct: 212 ETRNHLEGESSSTHFSPWLALGCISPAQIVALLRQYE------------QRNGANQSTYW 259
Query: 425 LMFELLWRDFF 435
++FELLWR++F
Sbjct: 260 IIFELLWREYF 270
>gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 149/325 (45%), Gaps = 39/325 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
+S++WFR LR+HDN +L A ES V PV+ DP D S G + G R F
Sbjct: 6 SSLMWFRKGLRIHDNPALQHAAKESNCVYPVFVIDPYFMEPDPNAFSPGSSRAGLNRIRF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES+ DL +L+ GS L+V G P V++ K + + + K++
Sbjct: 66 LLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDTDPYYQALDIKVK 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
GIEV TL+ ++ K G P +Y F K+ G + L L
Sbjct: 126 NYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFL-KLAGQPSWASSPLLTTLSW 184
Query: 300 LPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
LP GDV E ++P++ +LG + G+ + KGGE+EAL+RL K++
Sbjct: 185 LPPVGDVGTCEISNVPTVKELGYEEI------GQDESTPFKGGESEALKRLRESIRDKEW 238
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A ++ PKG+ S + + +SP+L GCLS R + L T + KW
Sbjct: 239 VANFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYQCL----TDVYKNMKW 287
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ S L+ +LLWRDFF
Sbjct: 288 HTSPPVS-------LVGQLLWRDFF 305
>gi|410665733|ref|YP_006918104.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
gi|409028090|gb|AFV00375.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
Length = 433
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 142/311 (45%), Gaps = 39/311 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WF NDLR+ DN +L A ++ +Y DPR + G R +FL++S
Sbjct: 4 VSLHWFINDLRLADNPALCRAAMAD-RLICLYVIDPRWFRPGRQQLPSMGEKRRTFLLQS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DL + L+A G L+V G PE+++ EL + + + + + +E ++ I+ A
Sbjct: 63 LADLDRRLRALGQQLLVLEGHPESLIPELVRRYRVNRLTVNEVCTVNEYRTLASIDNAC- 121
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+ V F G+ L L E P + FR++V+ +E R + A L P
Sbjct: 122 -HALVVDTFAGNQL--LSSRYRGHREFPLGFSQFRKQVEPLECRPIMAAPPSLPATP--- 175
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
L +Q +++ P + + GGET A +L K + P+ K
Sbjct: 176 ------------LPRTQPVSLA---SPGSGAFAGGETFAQVQLGKV---FDGMLPRRYKS 217
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
N D++ + S K+SPWLA+GC+SP ++ L W D S W
Sbjct: 218 -NRDALDQWDGSTKLSPWLALGCISPVQVWWRLL----------HWQDTHGFCE--SSYW 264
Query: 425 LMFELLWRDFF 435
+ FELLWR+FF
Sbjct: 265 VGFELLWREFF 275
>gi|407700131|ref|YP_006824918.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Black
Sea 11']
gi|407249278|gb|AFT78463.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Black
Sea 11']
Length = 435
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 29/316 (9%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + + WFR+DLR+HD ++ T + + VY D +++ + G G +R +FL
Sbjct: 13 LNQRGLFWFRHDLRLHDQAAIATLCKKVAQITFVYILDDKNFSPNEFGLSPMGQHRHTFL 72
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++ DL++ L G +L+V GK L L +A + + +DE ++
Sbjct: 73 LQTLEDLKRQLAGLGHELLVLKGKTVECLANLLQAGQYTHIGVSQHCGYDETAQLNAVKR 132
Query: 242 AMKD-EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+E F L+ + LPF + +MP + FR KV+ + + + D L L
Sbjct: 133 FSNSLTVVETPTF---GLFDVSTLPFSVEDMPDVFSPFRRKVE--KHSEPLPVHDALASL 187
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
P P D L L + A P+ S GGET AL L + ++Q+
Sbjct: 188 PD-AFTPPLDESFHLTLDIDLPA-------PSETSFIGGETAALSHLGTYLFDWQSASSY 239
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
DS S K S WLA G LS R E+ + A + ND
Sbjct: 240 KETRNALDSWQD---STKFSAWLANGSLSAR----EVVRQVQLFEATVEKND-------- 284
Query: 421 GSNWLMFELLWRDFFR 436
+ W+ FELLWR+FF
Sbjct: 285 STYWIYFELLWREFFH 300
>gi|384501095|gb|EIE91586.1| hypothetical protein RO3G_16297 [Rhizopus delemar RA 99-880]
Length = 434
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 136/295 (46%), Gaps = 45/295 (15%)
Query: 171 DKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD-----AVYAH 225
++ YR F+IESV L K LQ R S+L++ GKPE +L EL++ + + ++ H
Sbjct: 26 ERCANYRTRFVIESVMALEKELQKRKSNLLILFGKPERLLKELSEFLKKNDCEIHQIHTH 85
Query: 226 REVSHDEVKSEEKIEAAMKDEGIE---------------VKYFWGSTLYHLDDLPFKLGE 270
+EVS +K + MK E + + +T+ H DD+ F +
Sbjct: 86 KEVSRTLMKRNTRKSHFMKKYAYEELVVEKELTKIWNKTIAFHHDTTMIHPDDVDFTFEQ 145
Query: 271 MPTNYGGFREKVKGVE--IRKTIEALDQLKGLPSRGDV-------EPGDIPSLLDLGLSQ 321
P Y FR +++ + +R ++ D+L P D+ E G LL+ L +
Sbjct: 146 TPKVYAHFRRRIEKMNQPVRPLLQIPDELPAFP---DIIWKFPQSEQG--KDLLE-ELYE 199
Query: 322 SAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISP 381
+ A + + +A GGE A +RL+ + + N + + G +S K S
Sbjct: 200 AFAFEKDER-SAFPWPGGEDAARKRLENYLFKTDGAI---NYKQTRNGMIGTEYSTKFSA 255
Query: 382 WLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+L+ GCLSPR ++ EL + + ++G G W+ FELLWRDFFR
Sbjct: 256 YLSHGCLSPRLIWHELNRLQSQKKI------DKTGGDEDGIYWIRFELLWRDFFR 304
>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
Length = 600
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 131/279 (46%), Gaps = 21/279 (7%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFR LR+HDN +L A S +V P++ DP KS+ +K G R FL+ES+
Sbjct: 51 SILWFRKGLRLHDNPALRDACTGSAAVFPIFIIDPYFLQKSN---NKVGVNRYQFLLESL 107
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
SDL +L + GS L+V G PE V+ + + + + + +++ ++
Sbjct: 108 SDLNSSLTSLGSQLLVLRGTPEEVIPRVLRDWSIKKLCYEIDTEPYAKARDARVDDMARE 167
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS-R 303
G+EVK W TLY D L + G+ P F + V V L LP+
Sbjct: 168 AGVEVKKHWSHTLYDTDMLVRENKGKAPLTMQAFEKLVDRVG--------HPLTALPAPT 219
Query: 304 GDVEPGDI--PSLLDLGLSQSAAMSQGGKPAANSM-KGGETEALQRLKKFA--AEYQAQP 358
+ P D+ P + D + G K A ++ KGGETEAL+RL+ + ++ A
Sbjct: 220 ARLPPVDVSLPGIKDAEVGVPTWQEMGFKEAPTAIFKGGETEALKRLEHYMKDTKWXASF 279
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL 397
K + D S + + +SP+L GCLS R L
Sbjct: 280 EKPSTD---PSAFTEPSTTALSPYLKFGCLSARFFHQRL 315
>gi|392537198|ref|ZP_10284335.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas marina mano4]
Length = 436
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 61/324 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR++DN + + ++ V+ +P + ++ + G + +FL++S+
Sbjct: 6 LYWLQNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNTNYQQKQYGENKYTFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--------AVYAHREVSHDEVKS-EE 237
+L++ L ARG L V G+P +VL + K D VY RE++ + E
Sbjct: 66 ELQQALIARGQTLHVLEGEPVSVLKQRIKDQHIDEVVYSEQFGVYEQREINLLKAHCPEV 125
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI-----RKTIE 292
+ ++D TLY +DLPF L ++P ++ F++KV+ I T E
Sbjct: 126 QFTGTLQD-----------TLYQQNDLPFNLTDLPKSFTPFKKKVEAANIPITLSHITTE 174
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
L + L ++ +E +P K NSM GG T A +K
Sbjct: 175 LLPKPITLCAKNPIE---LP-----------------KAVNNSMHGGLTSA----QKHCE 210
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+Y A +++ G + + K SPWLA GC+S + +++ +++ + +A ND
Sbjct: 211 QYFAGELPSTYKITRNALDGFDNTTKFSPWLAFGCISAKQIYNAVEQYEQTYTA----ND 266
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 267 --------STYWIKFELLWREYFK 282
>gi|260778085|ref|ZP_05886978.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
coralliilyticus ATCC BAA-450]
gi|260606098|gb|EEX32383.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
coralliilyticus ATCC BAA-450]
Length = 440
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 141/316 (44%), Gaps = 42/316 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRD-YGKSSSGFDKTGPYRASFL 181
++ + WF DLR+ DN L A+ E S+L VYC D Y S G R +FL
Sbjct: 3 QKVGLYWFTCDLRIQDNPLLWQASCEVDSLLCVYCLPQMDRYLVRYSQEQSLGSERLAFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+SV+ L ++L+ G L+V +P VL + G Y +E +++
Sbjct: 63 QQSVACLSQSLENMGQKLLVFDDRPLDVLNRFIQDYGVTHFYCDLFSGVNEQSVVDRLSQ 122
Query: 242 AMKD-EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ-LKG 299
D I+ +TL+ LPF LGE+P+ + FR++V+ + I +D L
Sbjct: 123 LHSDLTCIQEPV---NTLFSQRLLPFTLGELPSTFTQFRKQVEHLPI-----GVDSSLSA 174
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LP P + S L++ + + GGET L + A A
Sbjct: 175 LPE----PPAQVISTLNME-----------EVSCQLFAGGETLGLAHCSGYFATSLASHY 219
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K ++ + G +FS K SPWLA+GCLSP+ +F L++ A ND
Sbjct: 220 KQTRN----ELDGFDFSTKFSPWLAVGCLSPKRIFVLLQEYEQREGA----ND------- 264
Query: 420 AGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 265 -STYWIFFELLWREYF 279
>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 149/328 (45%), Gaps = 36/328 (10%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGP 175
AA SI+WFR LR+HDN +L A+ S V PV+ DP D S G G
Sbjct: 2 AASGSGSIIWFRKGLRIHDNPALEYASKGSDFVYPVFVIDPHYMEPDPKAFSPGSRLAGL 61
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL+ES+ DL +L+ GS L++ G+P VL K G + +
Sbjct: 62 NRIRFLLESLVDLDTSLKKLGSRLLILRGEPGQVLTRCLKEWGVKKLCFEYDTDPHYQAL 121
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ +++ GIEV TL++ D+ + G+ P Y F K+ G + L
Sbjct: 122 DIRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFL-KLAGQPSWASSPLL 180
Query: 295 DQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
+ LP GDV E ++P++ DLG + Q P +GGE+EAL+RLK+
Sbjct: 181 TSISSLPPVGDVGSCEISEVPTIKDLGYGD---IEQEWIP----FRGGESEALKRLKESI 233
Query: 352 AEYQA----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
++ + + PKGN S + + +SP+L GCLS R + L+ ++
Sbjct: 234 SDKEWVANFEKPKGNP-----SAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVQKH 288
Query: 408 SKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ S AG +LLWRDFF
Sbjct: 289 T-----SPPVSLAG------QLLWRDFF 305
>gi|384082237|ref|ZP_09993412.1| deoxyribodipyrimidine photo-lyase type I [gamma proteobacterium
HIMB30]
Length = 429
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 139/322 (43%), Gaps = 46/322 (14%)
Query: 127 IVWF-RNDLRVHDNESLN----TANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++W R+ RV DN +LN AN V+P+ C +PR + G +TG + A F
Sbjct: 6 VIWLVRDSCRVVDNPALNLATQIANERDAFVIPLACLEPRRWADQQFGMPRTGTHWARFR 65
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ LR +L ARGS L V +P L + ++ V R ++ +E +IEA
Sbjct: 66 SESLKALRADLIARGSGLWVSAEEPVYALNRINPSVNVIKVVCDRPLATEERLENARIEA 125
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR---EKVKGVEIRKTIEALDQLK 298
EG V L+ + LPF+L E+P + FR EK G+ +E + +L
Sbjct: 126 ----EGYPVVTHDVDDLFRFEQLPFELDELPATFSKFRKIVEKKPGLAPDPPVE-MHELT 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+ +P + D LS A + GGET+A ++ Y
Sbjct: 181 PCMEQPWPDPVEWIETFDNQLSPRAEV---------ETYGGETQA----QRHWNTYLDAK 227
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+ ++ G S +S WLA GCLS R + W+D + +
Sbjct: 228 ALSHYKQTRNAFCGPMQSSHLSAWLAHGCLSARKI----------------WSDTLAYEA 271
Query: 419 GAGSN----WLMFELLWRDFFR 436
G+N WL FELLWR++FR
Sbjct: 272 REGANESTYWLRFELLWREYFR 293
>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
Length = 633
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 148/339 (43%), Gaps = 63/339 (18%)
Query: 111 HRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKS 166
HRP PN A S++WFR LR+HDN +L A ES V PV+ DP D
Sbjct: 139 HRPNSPNPSMASGSGSLMWFRKGLRIHDNPALQHAAMESNCVYPVFVIDPYFMEPDPNAF 198
Query: 167 SSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226
S G + G R FL+ES+ DL +L+ GS L+V G P V+++ K A A
Sbjct: 199 SPGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLKKNYASAA---- 254
Query: 227 EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV 285
GIEV TL+ D+ K G P +Y F K+ G
Sbjct: 255 --------------------GIEVFSPVSHTLFDSADIIQKNGGRPPLSYQSFL-KLAGQ 293
Query: 286 EIRKTIEALDQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETE 342
+ L LP GDV E ++P++ +LG + G+ KGGE+E
Sbjct: 294 PSWASSPLSTTLSWLPPVGDVGTCEISNVPTVKELGYEEI------GQDELTPFKGGESE 347
Query: 343 ALQRL------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 396
AL+RL K + A ++ PKG+ S + + +SP+L GCLS R +
Sbjct: 348 ALKRLRESIRDKDWVANFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYQC 400
Query: 397 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
L ++ + +S S L+ +LLWRDFF
Sbjct: 401 LTDVYKNV---------KRHTSPPVS--LVGQLLWRDFF 428
>gi|359435159|ref|ZP_09225386.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20652]
gi|357918200|dbj|GAA61635.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20652]
Length = 439
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 138/310 (44%), Gaps = 30/310 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN L+ E ++ V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRIDDNPILSELATEQCALDIVFVINPHWFKNNNYQQKPYGVHKQQFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ L RG L V G+P +VL + D V V E + +++A
Sbjct: 66 ALQQALIERGQTLHVLEGEPVSVLKQRIAEQHIDEVVCSELVGTYEQRQLARLKAHCPH- 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ K TL+ DLPF L E+P ++ FR+KV+ V I TI L KGL
Sbjct: 125 -VIFKTTQQDTLFKQSDLPFDLNELPKSFTPFRKKVEAVNIPITISTLP--KGL------ 175
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
+P + L + +++ M GG A LK++ + P K
Sbjct: 176 ----LPQPITLCAANPIELNEHTNYNNAIMHGGFKSAQTHLKQY---FSGLLPSTYKT-T 227
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
+ + G N + K S WLA GC+S R ++ +++ S + + W+
Sbjct: 228 RNELDGFNNTTKFSTWLAFGCVSARQVYKAVEQYE------------HSQITNESTYWIK 275
Query: 427 FELLWRDFFR 436
FELLWR++F+
Sbjct: 276 FELLWREYFK 285
>gi|395003805|ref|ZP_10387913.1| cryptochrome, DASH family [Acidovorax sp. CF316]
gi|394318288|gb|EJE54737.1| cryptochrome, DASH family [Acidovorax sp. CF316]
Length = 452
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 143/314 (45%), Gaps = 60/314 (19%)
Query: 152 VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLV 211
++PV+C P + GF + GP+R +F ++ DL + G+ L G P VL
Sbjct: 34 LVPVHC-QPVADETTPWGFARRGPHRRAFEGAALRDLAAGMAGLGNPLRQCQGLPAAVLP 92
Query: 212 ELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMKDEGIEVKYFWGSTLYHLDDLPFKLGE 270
LA+A+GA V V + +E+ E AA++ G++V+ W S+L DLP+ +G
Sbjct: 93 VLARAVGATTV-----VCEEIAAPQEQAEVAALRAAGLQVQTVWHSSLLQPCDLPWPVGA 147
Query: 271 MPTNYGGFREKVK--GV-------------------------EIRKTIEALDQLKGLPSR 303
+P + FR+ V+ G+ E+ T A+ +G
Sbjct: 148 LPGVFTTFRQAVEQAGIQPPQPLPAPAALLPPPAALTDAAWQEVLHTTGAVGAAQGQGGH 207
Query: 304 GD-VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
GD VE G+ G ++ G PA + GGET AL ++++ A Q K
Sbjct: 208 GDGVEAGE-----GAGCDVRSSFPY-GTPACD---GGETAALAHVQQYLASGQPHSYKAT 258
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + G +S K SPWLA G LS R L++ AA N+ G+
Sbjct: 259 RNG----LTGLGYSSKFSPWLATGALSARHAMAALRR----FEAAHGANE--------GT 302
Query: 423 NWLMFELLWRDFFR 436
WL FELLWRD+FR
Sbjct: 303 YWLWFELLWRDYFR 316
>gi|410626719|ref|ZP_11337472.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
gi|410153820|dbj|GAC24241.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
Length = 433
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 141/314 (44%), Gaps = 33/314 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ + WFR+DLR+HDN +L + + +L V+ DPR + S G R +FL +
Sbjct: 10 KRGLFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSSHFQSAHMGDKRWAFLQQ 69
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+S+L+ NLQ +G L V G+ VL L + + V + E + ++++
Sbjct: 70 SLSNLQDNLQQQGHQLFVLEGETLEVLDALVGSYTPNIVASGMHPGVYERQQWQRLKQKQ 129
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
D + +L+ D LPF++ +P ++ FR++V+ + + A
Sbjct: 130 PDVHFIQEN--AHSLFQPDTLPFEIEFLPASFTPFRKRVEDQSVALALPA--------PT 179
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLK-KFAAEYQAQPPKGN 362
D+P L S M K GGE L +L+ + + K
Sbjct: 180 ALPPAPDLPWL------SSKNMDLTKKATGLVFTGGEDAGLAQLEYTLFTSHNIKNYKQT 233
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + G ++S K+SPWLA GCLS R + EL + + ND +
Sbjct: 234 RNG----LDGWDYSSKLSPWLANGCLSVRQVLTELTRYESEYEK----ND--------ST 277
Query: 423 NWLMFELLWRDFFR 436
WL FELLWR++F+
Sbjct: 278 YWLYFELLWREYFQ 291
>gi|119476543|ref|ZP_01616894.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
gi|119450407|gb|EAW31642.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
Length = 444
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 134/318 (42%), Gaps = 30/318 (9%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + WF +DLR+ DN +L A E +++ +YC D G S + R FL
Sbjct: 1 MQKVGLFWFNHDLRIDDNATLLRAAAEVDTLICLYCADTAKTGPGSRQPAELSLRRREFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ DL L G LVVR+ P + +L +Y V E I
Sbjct: 61 FESLQDLEAQLNRHGQKLVVRIQPPLEAIAQLITVHNVSHIYRSNHVG----SYENTIWT 116
Query: 242 AMKDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-EALDQLK 298
++ + TL+ LPF + ++P+++ FR V+ ++I I E L
Sbjct: 117 ILRKRYGMLTFTQCHTHTLFEPSQLPFAIDQLPSSFSKFRRVVEKMDINSGIAEPLPTPT 176
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
LP +P + L PA +GG + + L+ + +A
Sbjct: 177 SLP-----KPALVADLAWQKRWHEYFTQSSDSPAL--FRGGASAGRRHLENYFGSRRASD 229
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K SPWLA G LS R + +L+ E +
Sbjct: 230 YKATRNG----LDGMDYSTKFSPWLANGSLSTRHIVRQLQGYE------------ERAGA 273
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FELLWR++F+
Sbjct: 274 NDSTYWILFELLWREYFQ 291
>gi|385333757|ref|YP_005887708.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
Length = 440
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 143/319 (44%), Gaps = 45/319 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN SL A ++S +L +Y DPR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNASL-LAASKSDMLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ G L + G+PETV+ +LA A + V R E + I+ +
Sbjct: 62 MALERSLRPLGQRLHIAFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKDRLPK 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR-------KTIEALDQLK 298
+ F +L+ LP L E+P + FR++V+ R +T+ AL
Sbjct: 122 AVFQQ--FETLSLFTEGSLPMALEELPDTFSQFRKQVEKTGDRCSERLRIRTLTALPPPP 179
Query: 299 GLP--SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
G P +RGD P IP + GGE L RL++F Y
Sbjct: 180 GFPEDNRGDCPP--IPEPVH----------------PLQFMGGEAAGLARLQEFL--YGN 219
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
K+ +++ + S K SPWLA GCLS R E+ +T T A+ N+
Sbjct: 220 HSIDRYKE-TRNALDTWDASSKFSPWLANGCLSVR----EVAETITEYEASETKNE---- 270
Query: 417 SSGAGSNWLMFELLWRDFF 435
+ WL FELLWR++F
Sbjct: 271 ----STYWLWFELLWREYF 285
>gi|451971961|ref|ZP_21925175.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
gi|451932148|gb|EMD79828.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
Length = 444
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 140/315 (44%), Gaps = 37/315 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLR+HDN L A E ++ +YC Y + + G + FL
Sbjct: 3 KKIGLYWFTNDLRLHDNPLLVDACAEMDELICLYCRPSVTPYLQHFAQETSLGRAKLQFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+++L ++L G L P L G +YA DE ++ +E
Sbjct: 63 EASLNELNQSLAKLGQRLWTVELTPYQALKYAISHFGITHIYADAFAGSDE---QQALER 119
Query: 242 AMKDE-GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A+K + +K TL + LPF+L ++P + FR++V G+++ + E++ L +
Sbjct: 120 AIKGTPHVNIKQQAIRTLLCEEQLPFELRQLPATFTKFRKQVAGLDLSQPYESVHVLPPV 179
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
PS G P D KPA GGE L+ +++ A A K
Sbjct: 180 PS-GTNFPTATTYYFDT------------KPA---FDGGELSGLEHCRRYFASSLASEYK 223
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G +S K SPWLA GC+SP ++ LK+ A ND
Sbjct: 224 QTRNG----LDGVEYSTKFSPWLAHGCVSPTIIYAMLKQYERKNGA----ND-------- 267
Query: 421 GSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 STYWIYFELLWREYF 282
>gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
Length = 441
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 27/310 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN +L A ++S +L VY +PR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNAAL-LAASKSDMLLCVYVVEPRWFKPGPLQCKTMGHHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+A G L + G PETV+ LA + R+ E + ++ +
Sbjct: 62 IGLERSLRALGQRLHIAWGDPETVIPALAHGHVISRIVRSRQPGTREAVQWQTLQDKLPK 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
I + L+ LP L ++PT + FR+ ++ +K +L+ +P+
Sbjct: 122 --IAFTQYETLGLFTESLLPMPLQDLPTTFSQFRKLIE----KKGDRGPSRLR-IPTLKM 174
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+ P P L D + A+ + +P A +GGE L RL+ F A A
Sbjct: 175 LPPA--PGLPDDNRGECPAIQEPTQPQA--FRGGEQAGLARLQDFLAGTHA---IDTYKE 227
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+++ N S K SPWLA GCLS R + D SIS + +S + WL
Sbjct: 228 TRNALDDWNSSSKFSPWLAHGCLSAREVAD-------SISLYE-----QQHTSNESTYWL 275
Query: 426 MFELLWRDFF 435
FE+LWR++F
Sbjct: 276 WFEVLWREYF 285
>gi|323493058|ref|ZP_08098192.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
gi|323312706|gb|EGA65836.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
Length = 449
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 139/310 (44%), Gaps = 35/310 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WF NDLRVHDN L+ A E ++ +YC+ Y S K + FL S+
Sbjct: 7 LYWFTNDLRVHDNPLLSKAAAEVDQLICLYCYPSVSPYLARYSQQAKWSEPKLQFLDASL 66
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L +L A L+V P + +L +G +Y DE + ++A
Sbjct: 67 HCLNLSLNALNQRLLVVDSHPYHAIKDLVYGLGVSHLYVDAVAGCDEQSIIDSLKAEF-- 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ ++V TL+ L+ LPF+L +P + FR++V+ + + I + +L LP
Sbjct: 125 DALDVAQKEVRTLFTLEQLPFELSALPDTFTQFRKQVEPLVVPLPISWVKRLPSLP---- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
D SL + L+ GG +GGE L +++ + + P K+
Sbjct: 181 ----DTLSLPGISLTH-----HGGSAL---FEGGEQAGLAHCRRY---FSSACPSEYKE- 224
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+++ G ++S K SPWLA GCLS ++++ LK+ + + W+
Sbjct: 225 TRNALDGLDYSTKFSPWLAHGCLSAKTIYAMLKRYE------------RLNGANESTYWI 272
Query: 426 MFELLWRDFF 435
FELLWR++F
Sbjct: 273 YFELLWREYF 282
>gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8]
gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Marinobacter aquaeolei VT8]
Length = 440
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 141/319 (44%), Gaps = 46/319 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN +L A + +L V+ DPR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNPALLAAARSDM-LLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ G L + G+PE VL ELA+ G + R +E + ++ + +
Sbjct: 62 MALERSLRPMGQRLHIAWGEPEVVLPELAREHGVQRLIRSRLPGTEEAAQWQALKTRLPE 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE-----IR-KTIEALDQLKG 299
+ + F ++ LP +L E+P + FR++V+ E +R +T+ AL G
Sbjct: 122 --VTFQQFETLGMFAEGQLPMELAELPDTFSQFRKQVEKAEQPDHTLRIRTVSALPPPPG 179
Query: 300 LP--SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQA 356
P +RG P IP +P S GGE L +L+ F
Sbjct: 180 FPEDNRGQCPP--IP-----------------EPIHRSPFTGGEEAGLAQLQAFVF---G 217
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
Q N +++ S K SPWLA GCLS R + +++ + ND
Sbjct: 218 QHRIANYKETRNALDDWGSSSKFSPWLANGCLSAREVVAAIEQYERQHTR----ND---- 269
Query: 417 SSGAGSNWLMFELLWRDFF 435
+ WL FELLWR++F
Sbjct: 270 ----STYWLWFELLWREYF 284
>gi|359447933|ref|ZP_09237491.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20480]
gi|358046252|dbj|GAA73740.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20480]
Length = 436
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 148/324 (45%), Gaps = 61/324 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR++DN + + ++ V+ +P + ++ + G + +FL++S+
Sbjct: 6 LYWLQNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNTNYQQKQYGENKYTFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--------AVYAHREVSHDEVKS-EE 237
+L++ L A G L V G+P +VL + K D VY RE++ + E
Sbjct: 66 ELQQALIACGQTLHVLEGEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLKAHCPET 125
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI-----RKTIE 292
+ ++D TLY +DLPF L ++P ++ F++KV+ I T E
Sbjct: 126 QFTGTLQD-----------TLYQQNDLPFNLTDLPKSFTPFKKKVEAANIPITLSHITTE 174
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
L + L ++ +E +P K NSM GG T A +K
Sbjct: 175 LLPKPITLCAKNPIE---LP-----------------KAVNNSMHGGLTSA----QKHCE 210
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+Y A +++ G + + K SPWLA GC+S + +++ +++ + +A ND
Sbjct: 211 QYFAGELPSTYKITRNALDGFDNTTKFSPWLAFGCISAKQIYNAVEQYEQTYTA----ND 266
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 267 --------STYWIKFELLWREYFK 282
>gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
Length = 436
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 150/324 (46%), Gaps = 61/324 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR++DN + + ++ V+ +P + ++ + G + +FL++S+
Sbjct: 6 LYWLKNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNTNYQQKQYGENKYTFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--------AVYAHREVSHDEVKSEE- 237
+L++ L ARG L V G+P +VL + K D VY RE++ + +
Sbjct: 66 ELQQALIARGQTLHVLEGEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLKAHCPQI 125
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI-----RKTIE 292
+ ++D TLY ++LPF L ++P ++ F++KV+ I T E
Sbjct: 126 QFTGTLQD-----------TLYQQNELPFNLTDLPKSFTPFKKKVEAANIPITLSHITTE 174
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
L + L ++ +E +P ++ NSM GG T A +K
Sbjct: 175 LLPKPITLCAKNPIE---LPKAIN-----------------NSMHGGLTSA----QKHCE 210
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+Y A +++ G + + K SPWLA GC+S + +++ +++ + +A ND
Sbjct: 211 QYFAGELPSTYKITRNALDGFDNTTKFSPWLAFGCISAKQIYNAVEQYEQTYTA----ND 266
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 267 --------STYWIKFELLWREYFK 282
>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 157/364 (43%), Gaps = 79/364 (21%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LRVHDN +L A ++ +V P++ DP S + G R FL++S+
Sbjct: 10 SIHWFRKGLRVHDNPALVDACADATAVQPIFVLDPWFLTPS-----RVGANRVRFLLQSL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL +L+ARGS L+V G P+ V+ +A G D + + + + A K
Sbjct: 65 TDLDASLRARGSSLLVLRGDPKAVVPAALRAWGCDRLTHEVDTEPYASARDAAVRDAAKR 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKL--GEMPTNYGGFREKVKG------------------- 284
G EVK F TLY ++ L K G PT+Y F K+ G
Sbjct: 125 VGAEVKTFASHTLYDMERLLSKCPKGAPPTSYASFL-KIAGSCGAVAKPAPPPPASMPGS 183
Query: 285 VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
+ + +E + ++ + S +V +P+L +LG + G PA +GGETE L
Sbjct: 184 PDGKSHVELVAMIEDVVSSAEV---GVPTLEELGYPELP--DDEGFPA----RGGETEGL 234
Query: 345 QRLKK------FAAEYQ----------------------AQPPKGNKDGNHDSIYGANF- 375
RL++ + AE+Q A P + + GA
Sbjct: 235 DRLRRMLSRKTWIAEFQKPMTSPTSLWAVVGADGKTQKPANPFEAASKASKSKTVGAEAF 294
Query: 376 ----SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 431
+ +SP+L GC+SPR+ + ELK ND + G A L +LLW
Sbjct: 295 LAPSTTALSPYLKFGCVSPRTFYHELKDVL---------NDAK-GKHSAPPVSLEGQLLW 344
Query: 432 RDFF 435
R+F+
Sbjct: 345 REFY 348
>gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
Length = 417
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 138/318 (43%), Gaps = 43/318 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASF 180
+ + + WF NDLRV DN L A +E ++ VY + + SG + G +R F
Sbjct: 1 MHKTGLYWFTNDLRVADNPLLTEAASEVDQLICVYLYPQLTPFLAQFSGQQQLGAHRLRF 60
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ +++ DL +L +G L V E L L + +Y +R DE K ++
Sbjct: 61 VDQALQDLNHSLAKQGQRLAVIHQTAEQTLPSLIEQYNVTHLYVNRCAGWDETKQMHTLK 120
Query: 241 AA---MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+K + V ++L+ LPF L ++P + FR+ ++ V R + +
Sbjct: 121 QQFPYLKVVSLSV-----NSLFQESQLPFTLAQLPATFTRFRKCMEPVNTRDLLPVSE-- 173
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
LPS +P + + P + + GGET Q + + + A
Sbjct: 174 --LPS------TPLPP-------EERSQPHQADPRVDYL-GGETAGQQHCQWYFSHDFAS 217
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + G ++S K SPWLA+GCLSP + +++ I A
Sbjct: 218 HYKQTRNG----LVGKSYSTKFSPWLALGCLSPAQLVAYIQRYEHEIGA----------- 262
Query: 418 SGAGSNWLMFELLWRDFF 435
+ W++FELLWR++F
Sbjct: 263 -NESTYWIVFELLWREYF 279
>gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
Length = 434
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 37/310 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFRNDLR+HDN L A +L R + + G R F+ ES+
Sbjct: 3 AIYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQG----LGEQRERFITESL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+ +LQ G L+V G PE V+ +L + G DAV+A + E ++ + +
Sbjct: 59 KALQDDLQPLGQSLLVLQGSPELVIPDLVRDYGVDAVHASQCAGSYETRAVRVLRERLH- 117
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
I V G+TL+ D+ E+P ++ FR KV+ K +E L + LP
Sbjct: 118 --IPVTEHAGNTLFRRSDIKALCPELPRSFSPFRRKVE-----KNLEPLKPSRDLPQ--- 167
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+ P P + AA+ P ++GG + +RLK+F + K ++
Sbjct: 168 LPP---PPAVTFHRIPDAAVK---PPVGLPLRGGSSAGQRRLKQFLHSGAIRSYKETRN- 220
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
D + G S +SPWLA+G LS R ++AA ++ + G++ + + WL
Sbjct: 221 CLDPLEG---SSTLSPWLALGSLSAR-----------EVAAAVHEHEAQEGANES-TYWL 265
Query: 426 MFELLWRDFF 435
+FELLWR++F
Sbjct: 266 VFELLWREYF 275
>gi|348029288|ref|YP_004871974.1| deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
gi|347946631|gb|AEP29981.1| Deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
Length = 434
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 151/328 (46%), Gaps = 46/328 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDK---TGPYRAS 179
++ I WFR DLR+ DN SL + ++ ++ VY + + S + +K G +R +
Sbjct: 3 KKVGIHWFRKDLRIQDNASLASIASQVDELVCVYLYQGQTSPNSVAIDNKDEAIGKHRIN 62
Query: 180 FLIESVSDLRKNLQARGSDLVVR-VGKPETV--LVELAKAIGADAVYAHREVSHDEVKSE 236
F+ +S+ L+ L L++ V ++ L++L + A V A +E
Sbjct: 63 FINQSLIQLQDALNGLNQRLIILPVNGSSSLQQLLDLVDELNATHVSAEWHCGFNERLQW 122
Query: 237 EKIEAAMKDEGIEVKYFW--GSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEA 293
+ ++ +K+ V++ STLY + PF + MP + FR+K+ K E++ E
Sbjct: 123 QALQDTLKESAPNVQFIQENSSTLYDISQFPFSVENMPGTFSPFRKKLEKYCEVKSVAEK 182
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS----MKGGETEALQRLKK 349
L L P + DL L +S M AN+ + GGE A ++L+
Sbjct: 183 LHSL--------------PRMSDLTLEKS--MCSSTLAVANNHYPKLAGGELSAHKQLEY 226
Query: 350 FAAEY-QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ K ++G + G +FS K+S WL++GC+S R +F ELK SA
Sbjct: 227 YLWNTDHISKYKETRNG----LDGWDFSSKLSAWLSIGCVSARQVFAELKNYE---SARV 279
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFFR 436
K ND + WL FELLWR+FF
Sbjct: 280 K-ND--------STYWLFFELLWREFFH 298
>gi|453088659|gb|EMF16699.1| cryptochrome [Mycosphaerella populorum SO2202]
Length = 626
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 159/375 (42%), Gaps = 74/375 (19%)
Query: 122 IRRASIVWFRNDLRVHDNESLN---TANNES----VSVLPVYCF---------------- 158
++R I R DLR+ DN N N +S VLP+Y F
Sbjct: 4 LQRVLIYLLRRDLRLADNPIFNELAQLNAQSQKPFTHVLPIYIFAAEQVEISGFLSSNQD 63
Query: 159 -DPRDYGKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
P +S G F + G +R F+ ESV DL+++L+ SDLV+RVG + + L
Sbjct: 64 KSPYKEARSRVGKFWRCGSHRVKFVAESVWDLKQDLRKIQSDLVIRVGSVKDAVQSL--- 120
Query: 217 IGADAVYAHREVSHDEVKS--------------EEKIEAAMKDEGIEVKYFWGSTLYHLD 262
V A+RE E+ E+ ++ +++ G E K W Y +D
Sbjct: 121 -----VDAYREREDAEIHGLWMTSEEGWEEQNEEKAVKTILEENGKEFK-LWTDEKYFID 174
Query: 263 D--LPFKL-GEMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPSR--GDVEPGDIPSLL 315
D +PFK ++P + +R+ V+ + RK + DQ+ LP P IPS
Sbjct: 175 DRDVPFKNPRDLPDVFTTYRKMVEPLRDGPRKELAKPDQMLPLPDHIPAQARPFTIPSTY 234
Query: 316 D--------------LGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
D + + + +SQ K +A+ GG T +R++ K
Sbjct: 235 DEVLAALTKPLGKQPIDVPEPPQVSQNAK-SAHPFVGGSTSGHERIRHLIDSGSMTSYKD 293
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G +FS K+S WLAMGC+S R + +L A K +G G
Sbjct: 294 TRNG----LLGLDFSTKLSAWLAMGCISSRQVHWQLVDFEDGKGACGKSANGYGKGESKG 349
Query: 422 SNWLMFELLWRDFFR 436
S + FELLWRD+ R
Sbjct: 350 SAAVRFELLWRDYMR 364
>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
Length = 527
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 155/324 (47%), Gaps = 43/324 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFL 181
+++WFR LR+HDN SL A + S +V PV+ DP D SS G + G R FL
Sbjct: 2 ALLWFRKGLRLHDNPSLEAACHGSRNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQFL 61
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES+ DL +NL +RGS L++ G P V+ EL + + + + KI+
Sbjct: 62 LESLQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCFEFDTEPYALDRDAKIKE 121
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
KD+GIE+ T+++ D L K G+ P + F + + + T + +
Sbjct: 122 HAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNL----VPATKPIGNGPSAI 177
Query: 301 PSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
P GD ++ +P+L +LG A + P +GGET AL RL +K+
Sbjct: 178 PPTGDLHGIKVVPVPTLEELGY---ADFHEDFSP----FRGGETVALTRLEDSLANEKWV 230
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
E++ PKG+ + + + +SP+L GCLS R ++ +K+ ++
Sbjct: 231 CEFEK--PKGDP-----TAFIKPATTVLSPYLKFGCLSSRLVYSRVKEV---------YS 274
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
+S +S S L +LLWR+FF
Sbjct: 275 RAKSFTSPPVS--LEAQLLWREFF 296
>gi|407726057|dbj|BAM46126.1| cryptochrome DASH [Lentinula edodes]
gi|407955603|dbj|BAM48913.1| cryptochrome dash [Lentinula edodes]
Length = 622
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 74/373 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANN--ESVSVLPVYCFDPRDY-----------------GKSS 167
I FR DLR+ DN + + +LP+Y P +S
Sbjct: 4 IYLFRRDLRISDNPIFHHLQKHPQFCHILPLYILPPNQIEVSGFLQDPKLESHYPQARSR 63
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAK------AIGAD 220
G F + GP+RA FL ES+ DL+++L+ RGSDL+VRVG+ E V+ ++ K +G
Sbjct: 64 LGKFWRCGPHRAKFLAESIWDLKESLKHRGSDLIVRVGRMEDVVGQILKRKEFQGKVG-- 121
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEG---IEVKYFWGSTLYHLDDLPFKL---GEMPTN 274
AV+ ++ + +EV E +IE A+K EG IE K + G + L+D F ++P
Sbjct: 122 AVWMTKDWASEEVNEELRIERAVKKEGDGKIEWKVWDGEEML-LNDNDFSTSDPAQVPDV 180
Query: 275 YGGFREKVKGVEIRKTIEALDQLKGLPSR-----GDVEPGDIPSLLDLGLS--QSAAMSQ 327
+ FR+ + + + LP P IP+ LD +S Q
Sbjct: 181 FTSFRKSFEPLRDNIRVPHCSTHSNLPPIPPKVPTQAAPFTIPTSLDDFISSLQKPVQDC 240
Query: 328 G---------GKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCK 378
G G A+ GGET A +R+ K ++G + G +FS K
Sbjct: 241 GLGPPILKPQGASTAHPFIGGETSAHERILHLLVSGSLSTYKDTRNG----LLGEDFSTK 296
Query: 379 ISPWLAMGCLSPRS------MFDELK---------KTATSISAASKWNDGESGSSGAGSN 423
+S +LA+GC++ R F++ K T +++ A + GE+ + A
Sbjct: 297 LSAYLALGCVTARQANAYMVAFEDGKDLPDFGIRLNTEVNLANAKGFGKGENKGTAA--- 353
Query: 424 WLMFELLWRDFFR 436
+ FELLWRD+ R
Sbjct: 354 -VRFELLWRDYMR 365
>gi|359441768|ref|ZP_09231654.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20429]
gi|358036270|dbj|GAA67903.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20429]
Length = 439
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 137/310 (44%), Gaps = 30/310 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN L+ E ++ V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRIDDNPILSELATEQCALDIVFVINPHWFKNNNYQQKPYGVHKQQFLMQSLF 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ L RG L V G+P +VL + D V V E + +++A
Sbjct: 66 ELQQALIERGQTLHVLEGEPVSVLKQRIAEQHIDEVVCSEHVGTYEQRQLARLKAHCLH- 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ K TL+ DLPF L E+P ++ F++KV+ + I TI AL KGL
Sbjct: 125 -VIFKTTQQDTLFQQSDLPFDLDELPKSFTPFKKKVEAINIPITISALP--KGL------ 175
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
+P + L + +++ M GG A L A+Y +
Sbjct: 176 ----LPQPITLCAANPIELNEHTNYNNAVMHGGLKSAQTHL----AQYFSGLLPSTYKTT 227
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
+ + G N + K S WLA GC+S R ++ +++ + + W+
Sbjct: 228 RNELDGFNNTTKFSTWLAFGCVSARQAYNVVEEYE------------HKHIANESTYWIK 275
Query: 427 FELLWRDFFR 436
FELLWR++F+
Sbjct: 276 FELLWREYFK 285
>gi|350295611|gb|EGZ76588.1| cryptochrome [Neurospora tetrasperma FGSC 2509]
Length = 740
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 163/383 (42%), Gaps = 91/383 (23%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN-TANNES----VSVLPVYCF----------------D 159
A + I R +LR+ DN + AN ES +LPVY F +
Sbjct: 2 AQSKVVIYAMRRELRLSDNPIFHHLANPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSEN 61
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P KS+ G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L + +
Sbjct: 62 PHPAPKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIKSLVEGLK 121
Query: 219 AD--AVYAHREVSHD--EVKSEEKIEAAM-KDEGIEVKYFWGSTLY----------HLDD 263
A V A SH+ E KS+EK A+ GI+ K W Y HL+D
Sbjct: 122 AKECQVGAVWMTSHEGSEEKSDEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLND 180
Query: 264 LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ--LKGLPSRGDVEPGDIPSLLDLGL-- 319
LP ++ T Y RK IE L + K LP E G +P+ LD +
Sbjct: 181 LP----DVFTTY------------RKQIEPLREKARKTLPV---PEKGALPAYLDTDMIP 221
Query: 320 SQSAAMSQGG----------KPAANSMK----------------GGETEALQRLKKFAAE 353
SQ A + G +P N +K GGET A +R+
Sbjct: 222 SQQAPFNIPGTCEELVDAVVRPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVMS 281
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ K +++G + G +FS K+S +LA GC++ R + L K DG
Sbjct: 282 GGMKSYKDSRNG----LLGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADG 337
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
G+ + ELLWRD+ R
Sbjct: 338 FGEGDNQGTETVRMELLWRDYMR 360
>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
Length = 440
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 141/312 (45%), Gaps = 52/312 (16%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++V F DLRVHD+ +L A + V+P+Y DP K P R FL +
Sbjct: 4 RTAVVLFTRDLRVHDHPALAAACSAFDRVVPLYVLDP--------ALQKLSPNRTRFLHQ 55
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DLR+ L+ RG DLV+R G P V+LA+ +GA+ V +VS + E ++ A
Sbjct: 56 SLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRYAHRRERRLRAEC 115
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+ ++ F G T+ L G+ + + +GV R + A +++ LP
Sbjct: 116 DRHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDELAAPKRVR-LPD- 173
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
V+PG +P +G P ++ GGET A +RL + P
Sbjct: 174 -GVDPGRLPD-----------PPKGDSP--DAAVGGETVARRRLTAWL------PTLDRY 213
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
D HD + G S ++SP+L GC+SP ++ A++ D +
Sbjct: 214 DDIHDDMAGDETS-RLSPYLRFGCVSP-------------LAVANRAGDRDGP------- 252
Query: 424 WLMFELLWRDFF 435
+ +L WRDF+
Sbjct: 253 -FVRQLCWRDFY 263
>gi|417949759|ref|ZP_12592890.1| deoxyribodipyrimidine photolyase [Vibrio splendidus ATCC 33789]
gi|342807637|gb|EGU42819.1| deoxyribodipyrimidine photolyase [Vibrio splendidus ATCC 33789]
Length = 452
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 36/317 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F NDLR++DN L A+ +SV L +PR Y S + G +R
Sbjct: 1 MKKIGLYLFTNDLRINDNTLLYKAS-QSVDELLCVAVEPRLSTYSVRLSQEQENGAHRHL 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ +++ DL +L G L V LV+L K+ +A +HDE +
Sbjct: 60 FIKQAIDDLALSLARLGQRLFVLERNTSEDLVQLVKSQQVTHFFASSHCAHDERQLVIDT 119
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
D I ++ +TL+ D PF+L ++P ++ FR +V+ +EI + L
Sbjct: 120 LTQCPDLFISQQH--HTTLFESDAFPFELTKLPRSFTKFRLQVEYLEIEIEESVITSLPP 177
Query: 300 LPSRG-DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P + IP L D KP GGET L L+ + + A
Sbjct: 178 APQTATECYRKPIPELND------------SKPG--DYIGGETVGLIHLENYFSNDYA-- 221
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
G +++ G S K SPWLA+GC+SP++++ LK+ A ND
Sbjct: 222 --GTYKQTRNALDGIENSTKFSPWLALGCVSPKTIYRHLKQFEAHRGA----ND------ 269
Query: 419 GAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 --STYWIYFELLWREYF 284
>gi|387812715|ref|YP_005428192.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337722|emb|CCG93769.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 440
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 143/319 (44%), Gaps = 46/319 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN +L A + +L V+ DPR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNPALLAAARSDM-LLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ G + + G+PE VL ELA+ G + R +E + ++A + +
Sbjct: 62 MALERSLRPLGQRMHIAWGEPEIVLPELAREHGVQRLIRSRLPGTEEAAQWQALKARLPE 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE-----IR-KTIEALDQLKG 299
+ + F ++ LP +L E+P + FR++V+ E +R +T+ AL G
Sbjct: 122 --VTFQQFETLGMFTEGQLPMELAELPDTFSQFRKQVEKAEQPDYTLRIRTVSALPPPPG 179
Query: 300 LP--SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQA 356
P +RG P IP +P S GGE L +L+ F
Sbjct: 180 FPEDNRGQCPP--IP-----------------EPIHRSPFTGGEEAGLAQLQAFVF---G 217
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
Q + +++ + S K SPWLA GCLS R + +++ + ND
Sbjct: 218 QHRIADYKETRNALDDWDSSSKFSPWLANGCLSVREVVAAIEQYERQHTR----ND---- 269
Query: 417 SSGAGSNWLMFELLWRDFF 435
+ WL FELLWR++F
Sbjct: 270 ----STYWLWFELLWREYF 284
>gi|336465318|gb|EGO53558.1| hypothetical protein NEUTE1DRAFT_92963 [Neurospora tetrasperma FGSC
2508]
Length = 740
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 163/383 (42%), Gaps = 91/383 (23%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN-TANNES----VSVLPVYCF----------------D 159
A + I R +LR+ DN + AN ES +LPVY F +
Sbjct: 2 AQSKVVIYAMRRELRLSDNPIFHHLANPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSEN 61
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P KS+ G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L + +
Sbjct: 62 PHPAPKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIKSLVEGLK 121
Query: 219 AD--AVYAHREVSHD--EVKSEEKIEAAM-KDEGIEVKYFWGSTLY----------HLDD 263
A V A SH+ E KS+EK A+ GI+ K W Y HL+D
Sbjct: 122 AKECQVGAVWMTSHEGSEEKSDEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLND 180
Query: 264 LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ--LKGLPSRGDVEPGDIPSLLDLGL-- 319
LP ++ T Y RK IE L + K LP E G +P+ LD +
Sbjct: 181 LP----DVFTTY------------RKQIEPLREKARKTLPV---PEKGALPAYLDTDMIP 221
Query: 320 SQSAAMSQGG----------KPAANSMK----------------GGETEALQRLKKFAAE 353
SQ A + G +P N +K GGET A +R+
Sbjct: 222 SQQAPFNIPGTCEELVDAVVRPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVMS 281
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ K +++G + G +FS K+S +LA GC++ R + L K DG
Sbjct: 282 GGMKSYKDSRNG----LLGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADG 337
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
G+ + ELLWRD+ R
Sbjct: 338 FGEGDNQGTETVRMELLWRDYMR 360
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
Length = 537
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 149/325 (45%), Gaps = 39/325 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
+S++WFR LRVHDN +L+ A+ S V PV+ DP D S G + G R F
Sbjct: 7 SSLMWFRKGLRVHDNPALDYASKGSKFVYPVFVIDPHYMEPDPNAFSPGSSRAGINRIRF 66
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES+ DL +L+ GS L+V G+P VL+ K + + + + K++
Sbjct: 67 LLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDTDSYYQALDAKVK 126
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
IEV TL++ D+ K G+ P +Y F KV G + +
Sbjct: 127 EYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFL-KVAGQPSWASSPLPTTISS 185
Query: 300 LPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
LP GDV E ++P+L +LG + +GGE+EAL+RL K++
Sbjct: 186 LPPVGDVGSCEISEVPTLEELGYGDVE------QDEWAPFRGGESEALKRLREKITNKEW 239
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A ++ PKG+ S + + +SP+L GCLS R + L+ ++
Sbjct: 240 VANFEK--PKGDP-----SAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNV------ 286
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
G+ S L+ +LLWRDFF
Sbjct: 287 --GKHTSPPVS---LLGQLLWRDFF 306
>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
Length = 440
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 140/312 (44%), Gaps = 52/312 (16%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++V F DLRVHD+ +L A + V+P+Y DP K P R FL +
Sbjct: 4 RTAVVLFTRDLRVHDHPALAAACSAFDRVVPLYVLDP--------ALQKLSPNRTRFLHQ 55
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DLR+ L+ RG DLV+R G P V+LA+ +GA+ V +VS + E ++ A
Sbjct: 56 SLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRYAHRRERRLRAEC 115
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+ ++ F G T+ L G+ + + +GV R + A +++ LP
Sbjct: 116 DRHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDELAAPKRVR-LPD- 173
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
V+PG +P +G P ++ GGE A +RL + P
Sbjct: 174 -GVDPGRLPD-----------PPKGDSP--DAAVGGEAVARRRLTAWL------PTLDRY 213
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
D HD + G S ++SP+L GC+SP ++ A++ +G
Sbjct: 214 DDIHDDMAGDETS-RLSPYLRFGCVSP-------------LAVATR--------AGGWDG 251
Query: 424 WLMFELLWRDFF 435
+ +L WRDF+
Sbjct: 252 PFVRQLCWRDFY 263
>gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23]
Length = 695
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 148/362 (40%), Gaps = 62/362 (17%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVS-VLPVYCF----------------DPRDYGKS 166
+ R DLRV DN L TA++ + +LPVY F P +S
Sbjct: 8 VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFPAQQVELSGFLKDGEQSPYPPARS 67
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-----GAD 220
G F + GP+RA F E+V +L+++L+ GS LV+R G + V L +
Sbjct: 68 QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVFDHLVNELKDAVPCVS 127
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL------PFKLGEMPTN 274
+V+ E S +EV+ +E I + GIE K W Y +DD P L ++ T
Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSKRGIEFK-LWKDEKYFVDDRDTGLENPADLPDVFTT 186
Query: 275 YGG----FREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGK 330
Y REK + V R AL P G + P L + L + K
Sbjct: 187 YRKSQEPLREKPRKVLPRPAKSAL---PAFPQEGSIPAQAHPFLSPVSLED--LQKRLVK 241
Query: 331 PAANSMK----------------GGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN 374
P N M GGET RL+ K ++G + G +
Sbjct: 242 PVENIMDNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNG----LVGVD 297
Query: 375 FSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
+S K+S +L++GCL+ R + +EL K K G G+ + FELLWRD+
Sbjct: 298 YSLKLSGYLSLGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDY 357
Query: 435 FR 436
R
Sbjct: 358 MR 359
>gi|356526185|ref|XP_003531700.1| PREDICTED: (6-4)DNA photolyase-like [Glycine max]
Length = 535
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 145/322 (45%), Gaps = 36/322 (11%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
S++WFR LR+HDN +L A+ + + PV+ DP D S+ G + G R F
Sbjct: 6 GSLLWFRKGLRIHDNPALEVASRGASHLYPVFVIDPHFMEPDPNSSAPGSSRAGLNRIKF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+E + DL NL+ GS L++ G P V++ K + + + + K++
Sbjct: 66 LLECLVDLDLNLKNLGSRLLILKGDPAEVVIRCLKELHVKKLCFEYDTEPYYQALDVKVK 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
GIEV TL++ D+ K G+ P +Y F K+ G L
Sbjct: 126 NFALAAGIEVFSPVSHTLFNPTDIIEKNGGKPPLSYQSF-VKLAGEPPSSLSTVYSSLPP 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAAE 353
+ + G + ++P++ DLG + + + KGGE+EAL+RL KK+ A
Sbjct: 185 VGNLGSCDISEVPTIRDLGYGDAE------QDEFSPFKGGESEALKRLDECMKDKKWVAN 238
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
++ PKGN S + + +SP+L GCLSPR + ++ S+ +
Sbjct: 239 FEK--PKGNP-----SAFLKPATTVLSPYLKFGCLSPRYFYQSIQDVYKSMPKHT----- 286
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
L+ +LLWR+FF
Sbjct: 287 ------LPPVSLIGQLLWREFF 302
>gi|148980022|ref|ZP_01815843.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
gi|145961465|gb|EDK26769.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
Length = 447
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 34/316 (10%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F NDLR++DN L+ A+ + V L +P+ Y S G +R
Sbjct: 1 MKKIGLYLFTNDLRINDNTLLHRAS-QLVDELLCVAIEPKLSTYSVRLSQEQHNGAHRHL 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ ++++DL NL G L V LV+L K+ +A +HDE + +
Sbjct: 60 FIKQAINDLALNLARLGQRLFVLERNKSEDLVQLVKSQQVTHFFASSHCAHDERQLIKDT 119
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
D I ++ +TL+ D PF+L ++P ++ FR +V+ +EI + L
Sbjct: 120 LTQCPDLFISQQH--HTTLFESDAFPFELTKLPRSFTKFRLQVERLEINTNESVVAYLPP 177
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P P P L +S A G GGET L L+ + + A
Sbjct: 178 APQTA-TYPYREPIL------ESEASDIG------DYVGGETAGLIHLESYFSNDYA--- 221
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
G +++ G S K SPWLA+GC+SP++++ LK+ A ND
Sbjct: 222 -GTYKQTRNALDGIENSTKFSPWLALGCVSPKTIYRHLKQFEAHRGA----ND------- 269
Query: 420 AGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 -STYWIYFELLWREYF 284
>gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
Length = 433
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 141/313 (45%), Gaps = 49/313 (15%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFLIESVSD 187
WFRNDLR+ DN ++ ++ + S+L VY PR + G R FL ES+ +
Sbjct: 6 WFRNDLRLRDNPAI-ASHTAADSLLCVYLMPKPRPW----CNLVGVGAQRERFLRESLQE 60
Query: 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV-KSEEKIEAAMKDE 246
L L +G L+V G PE VL +L A +A EVS S+E+ A D+
Sbjct: 61 LHLQLAEQGQALMVLEGSPELVLPDLV------ARFAITEVSTTFTPGSQERKTLAYLDQ 114
Query: 247 GIEV--KYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR- 303
+ V + G++L+ DLPF+L ++P + GFR V+ + +R + + L P+
Sbjct: 115 KLPVPLQVHRGNSLFEPSDLPFELQDLPKVFSGFRRAVEKLNVRGPSPSTEVLPPPPAAQ 174
Query: 304 -GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ P DI KP + GG + L+RL++F + ++
Sbjct: 175 FDAIPPADI-----------------SKPTMLPLPGGRSAGLRRLRQFVFDDRSITQYKE 217
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
D++ G S +SPWLA G LS R + E+ + S +
Sbjct: 218 TRNCLDALDG---SSTLSPWLANGNLSVREVAHEVFRFE------------RENLSNEST 262
Query: 423 NWLMFELLWRDFF 435
WL FELLWR+FF
Sbjct: 263 YWLFFELLWREFF 275
>gi|326793764|ref|YP_004311584.1| DASH family cryptochrome [Marinomonas mediterranea MMB-1]
gi|326544528|gb|ADZ89748.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1]
Length = 458
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 138/324 (42%), Gaps = 45/324 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRD----------YGKSSSGFDKTG-- 174
I+WF +DLR++DN L A+ E ++ +YC P D + S FD T
Sbjct: 5 IIWFGDDLRINDNSLLYQASREVDRLICLYCSSPDDNNVDNSDPIRSSNTPSTFDNTSIK 64
Query: 175 --PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE 232
+R F DL +L+ + L V + L +Y H +E
Sbjct: 65 PSEHRTLFRHMGALDLDHSLRRLHNKLWVSSKNASATIEFLVSKYPITHIYRHHHAGINE 124
Query: 233 VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE 292
+ K++A D +Y G TL+ LPF L E+P ++ FR+ V+ +++ KTI+
Sbjct: 125 ATTLTKLQARYTDIRWITEY--GLTLFSRHALPFSLNELPESFTKFRKLVETIDVPKTIK 182
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
A+D+ LP + + +L + + G P GGE+ A L + +
Sbjct: 183 AVDR---LPPPVAINSPYVKTL------PHTSFALDGSP----FVGGESYAHAHLADYFS 229
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
A K ++ D + S K SPWLA G +SPR + + L + +
Sbjct: 230 SGAASTYKETRNTMDDWMS----STKFSPWLAQGAISPRQVMNSLAFYESRM-------- 277
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
S + W+ FELLWR++F+
Sbjct: 278 ----GSNDSTYWIYFELLWREYFQ 297
>gi|343507695|ref|ZP_08745084.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
gi|342796945|gb|EGU32607.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
Length = 446
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 136/310 (43%), Gaps = 35/310 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKT-GPYRASFLIESV 185
+ WF DLR+ +N L + E +++ +YC + ++ G +A F+ +SV
Sbjct: 7 LYWFTQDLRIDENPLLQRVSQEVETLICLYCVPKMTRFLTHYAQERQFGAAKAQFVAQSV 66
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L ++L A L++ P L L K +Y V DE ++++
Sbjct: 67 HNLSESLSALRQRLLITTSDPHIALHGLIKRHAVTHLYCDHFVGSDERDVLQRLDEEFPS 126
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ LYH DLPF+L +P + FR++++ + T + L
Sbjct: 127 LIVTQDNM--RNLYHEADLPFELEALPATFTQFRKQIEAQQKPSTSTKVTHL-------- 176
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
P L+L + + P GGE + +++ + Q K ++
Sbjct: 177 ------PPPLELQFEDTFSALNDDLPVL--FPGGEHAGIAHCQRYFSSSLPQHYKQTRN- 227
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ G ++S K+SPWLAMGCLSPR++ L + ++G+ G++ + + W+
Sbjct: 228 ---ELDGMDYSTKLSPWLAMGCLSPRTVLAMLAE-----------HEGQYGANES-TYWI 272
Query: 426 MFELLWRDFF 435
FELLWR++F
Sbjct: 273 YFELLWREYF 282
>gi|254227923|ref|ZP_04921353.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262396094|ref|YP_003287947.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
Ex25]
gi|151939419|gb|EDN58247.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262339688|gb|ACY53482.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
Ex25]
Length = 444
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 140/315 (44%), Gaps = 37/315 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLR+HDN L A E ++ +YC Y + + G + FL
Sbjct: 3 KKIGLYWFTNDLRLHDNPLLIDACAEMDELICLYCRPSVTPYLQHFAQETSLGRAKLQFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+++L ++L G L P + G +YA DE ++ +E
Sbjct: 63 EASLNELNQSLAKLGQRLWTVELTPYQAIKYAISHFGITHIYADAFAGSDE---QQALER 119
Query: 242 AMKDE-GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A+K + +K TL + LPF+L ++P + FR++V+G+++ + E++ L +
Sbjct: 120 AIKGTPHVNIKQQAIRTLLREEQLPFELRQLPATFTKFRKQVEGLDLSQPYESVHALPPV 179
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
PS G P D KP + GGE L+ +++ A A K
Sbjct: 180 PS-GMNFPTATTYYFDT------------KPVFD---GGELSGLEHCRRYFASSLASEYK 223
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
+ + + G +S K SPWLA GC+SP ++ LK+ A ND
Sbjct: 224 QTR----NELDGMEYSTKFSPWLAHGCVSPTIIYAMLKQYEQKNGA----ND-------- 267
Query: 421 GSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 STYWIYFELLWREYF 282
>gi|302422386|ref|XP_003009023.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
gi|261352169|gb|EEY14597.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
Length = 703
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 157/357 (43%), Gaps = 52/357 (14%)
Query: 127 IVWFRNDLRVHDNESLN----TANNESVSVLPVYCF----------------DPRDYGKS 166
I R+DLRV DN L+ + ++ +LPVY F P +S
Sbjct: 9 IYLLRHDLRVSDNPILHHLATSKDHGFTHLLPVYVFPAHQIETSGFIRDGSKSPYPEARS 68
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD----- 220
G F + GP+RA F+ +SV +L+++ Q GS L +R G+ + VL L K +
Sbjct: 69 QVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLKGLTEKQQTIG 128
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL---GEMPTNYGG 277
AV+ E + +E + E+ + + + IE K W Y +DD +L ++P +
Sbjct: 129 AVWMTLEDAVEEKRDEKAVSSICSENNIEFK-LWQDEKYFVDDRDTELENAHDLPDIFTT 187
Query: 278 FREKVKGVEIRKTIE----ALDQLKGLPSRGDV----EPGDIPSL---LDLGLSQSAAMS 326
+R+ + + R + + L PS V P ++P L+ L +
Sbjct: 188 YRKTQEPLRERPRPTLPKPSNNSLPPYPSDDVVPVQERPFEMPVTYEELEAALLKPVEDV 247
Query: 327 QGGKP-------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKI 379
P + + +KGGE +ALQR+ K ++G + G +FS K+
Sbjct: 248 LDDAPEYPSNATSVHPLKGGELDALQRVNHLIKSCSMSNYKNTRNG----LLGVDFSTKL 303
Query: 380 SPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
S +LA+GCL+ R + +E+ K K DG G+ + FELLWRD+ R
Sbjct: 304 SGYLALGCLTARQVHEEMVKYEDGQGPQYKEIDGFGNGENEGTKAVRFELLWRDYMR 360
>gi|333893078|ref|YP_004466953.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2]
gi|332993096|gb|AEF03151.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2]
Length = 437
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 139/310 (44%), Gaps = 28/310 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR+DLR HD +L++ + + +Y D + +S G G +R +FLI+++
Sbjct: 18 LFWFRHDLRFHDQVALSSLCQQVDELTLLYIIDDSWFVPNSYGIQPVGEHRFNFLIDTIE 77
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK-D 245
L + G ++ G+ +LV L + ++A H ++EA +
Sbjct: 78 ALNEKASTLGHSILTLRGQTPELLVSL---LSSNAFTHFGVTEHGGYNERREVEAVSRFF 134
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
IE+ S+L++ DDLPF L MP + F+ K++ K E + L LP
Sbjct: 135 PNIEIVTGESSSLFNQDDLPFNLEVMPDVFTPFKRKIESA--IKPREPMATLTALPR--S 190
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
P DI + L++ +Q A + GGE L L + E++ +
Sbjct: 191 YTP-DIDAECQYTLNRRPPRNQ----AEGTFVGGEDAVLSHLNSYLFEWKV---AASYKE 242
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+++ S K+SPWLA G LS R + E+KK ++ ND + W+
Sbjct: 243 TRNALDNWRDSTKLSPWLATGALSARYVIQEVKKYEQNVVK----ND--------STYWI 290
Query: 426 MFELLWRDFF 435
FELLWR++F
Sbjct: 291 YFELLWREYF 300
>gi|392555103|ref|ZP_10302240.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas undina NCIMB
2128]
Length = 436
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 140/320 (43%), Gaps = 43/320 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + W +NDLR+ DN LN + + + V+ +P + ++ G ++ FL
Sbjct: 1 MKKRILYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNNYQQKTYGVHKQRFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ +L++++ G L + G P VL + + D V +++ V + +I A
Sbjct: 61 MQSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQIG---VYEQRQISA 117
Query: 242 AM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
K + K TLY LPF+L +PT + FR+K++ EI A +
Sbjct: 118 LKSKCTTVVFKSVMQDTLYQQQQLPFELANLPTGFTPFRKKIEAAEISLATHAFSAARLP 177
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK--GGETEALQRLKKFAAEYQAQP 358
P P +L A KPA + + GG AL+ +++ + +
Sbjct: 178 P----------PIIL-------CAKQPIEKPATGNTQLLGGHQAALEHCQQY---FSSAL 217
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
P K + + G + S K S WLA GC+S + +F + D
Sbjct: 218 PSSYKI-TRNELDGFDNSTKFSSWLAFGCISAKQVFCAV--------------DAYEAQY 262
Query: 419 GAG--SNWLMFELLWRDFFR 436
GA + W+ FELLWR++F+
Sbjct: 263 GANESTYWIKFELLWREYFK 282
>gi|392535677|ref|ZP_10282814.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas arctica A
37-1-2]
Length = 439
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 136/310 (43%), Gaps = 30/310 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN L+ E ++ V+ + + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRIDDNPILSELATEQCALDIVFVINTHWFKNNNYQQKPYGVHKQQFLMQSLF 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ L RG L V G+P +VL + D V V E + +++A
Sbjct: 66 ELQQELIERGQTLHVLEGEPVSVLKQRIAEQHIDEVVCSEHVGTYEQRQLARLKAHCPH- 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ K TL+ DLPF L E+P ++ FR+KV+ + I T L KGL
Sbjct: 125 -VIFKTTQQDTLFQQSDLPFDLDELPKSFTPFRKKVEAMNIPITTSTLP--KGL------ 175
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
+P + L + +++ M GG A LK++ ++ K +
Sbjct: 176 ----LPQPITLCAANPIELNEHTNYNNAVMNGGLKSAQTHLKQYFSDLLPSTYKITR--- 228
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
+ G N + K S WLA GC+S R ++ ++ + + + W+
Sbjct: 229 -NEFDGFNNTTKFSTWLAFGCVSARQVYKAVEAYE------------HNQITNESTYWIK 275
Query: 427 FELLWRDFFR 436
FELLWR++F+
Sbjct: 276 FELLWREYFK 285
>gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102]
Length = 702
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 154/358 (43%), Gaps = 54/358 (15%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVS-VLPVYCFD----------------PRDYGKS 166
+ R DLRV DN L TA++ + +LPVY F P KS
Sbjct: 8 VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFSAQQVELSGFLKDGEQSPYPPAKS 67
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-----GAD 220
G F + GP+RA F E+V +L+++L+ GS LV+R G + V+ L K +
Sbjct: 68 QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVVDHLVKELKDAVPCVS 127
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL------PFKLGEMPTN 274
+V+ E S +EV+ +E I + +GIE + W Y +DD P L ++ T
Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSQQGIEFE-LWKDEKYFVDDRDTGLESPADLPDVFTT 186
Query: 275 YGG----FREKVKGVEIR---KTIEALDQLKGLPSRGD--VEPGDIPSLLDLGLSQSAAM 325
Y REK + V R ++ A + + +P++ V P + L L +
Sbjct: 187 YRKSQEPLREKPRKVLPRPAKSSLPAFPEEESIPAQAHPFVSPVSLEDLQKR-LVKPLEH 245
Query: 326 SQGGKPA-------ANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCK 378
P + GGET RL+ K ++G + G ++S K
Sbjct: 246 IMDNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNG----LVGVDYSLK 301
Query: 379 ISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+S +L++GCL+ R + +EL K K G G+ + FELLWRD+ R
Sbjct: 302 LSAYLSLGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMR 359
>gi|346970183|gb|EGY13635.1| cryptochrome DASH [Verticillium dahliae VdLs.17]
Length = 700
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 156/357 (43%), Gaps = 52/357 (14%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVS-VLPVYCF----------------DPRDYGKS 166
I R+DLRV DN L T + + +LPVY F P +S
Sbjct: 9 IYLLRHDLRVSDNPILHHLATCKDHGFTHLLPVYVFPAHQIETSGFIRDGSKSPYPEARS 68
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----AD 220
G F + GP+RA F+ +SV +L+++ Q GS L +R G+ + VL L K +
Sbjct: 69 QVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLKGLSEKQQTVG 128
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL---GEMPTNYGG 277
AV+ E + +E + E+ + + + IE K W Y +DD +L ++P +
Sbjct: 129 AVWMTLEDAVEEKRDEKAVSSICSENNIEFK-LWQDEKYFVDDRDTELENAHDLPDIFTT 187
Query: 278 FREKVKGVEIRKTIEALDQLKG----LPSRGDV----EPGDIPSL---LDLGLSQSAAMS 326
+R+ + + R G PS V +P ++P+ L+ L +
Sbjct: 188 YRKTQEPLRERPRPTLPKPSNGSLPPYPSDDVVPVQEKPFEMPATYEELEAALLKPVKDV 247
Query: 327 QGGKP-------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKI 379
P + + +KGGE +ALQR+ K ++G + G +FS K+
Sbjct: 248 LDDAPEYPSEATSVHPLKGGEVDALQRVDHLIKSCSMSNYKNTRNG----LLGVDFSTKL 303
Query: 380 SPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
S +LA+GCL+ R + +E+ K K +G G+ + FELLWRD+ R
Sbjct: 304 SGYLALGCLTARQVHEEMVKYEDGQGLEYKEIEGFGNGENEGTKAVRFELLWRDYMR 360
>gi|389746080|gb|EIM87260.1| cryptochrome [Stereum hirsutum FP-91666 SS1]
Length = 641
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 153/360 (42%), Gaps = 52/360 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSS----------- 168
R I R DLR+ DN L+ + + +LP+Y F S S
Sbjct: 5 RILIYMLRRDLRLADNPILHHISTSRSPQYTHLLPLYIFPHNQLEVSGSVKSPFPEARSQ 64
Query: 169 --GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD------ 220
GF + GP+RA FL ES+ D+++ L+ +GS LV+RVGK V+ L I +
Sbjct: 65 VAGFWRCGPHRAKFLAESLWDVKEGLEGKGSGLVIRVGKVGEVVRGLIDVIMENEAGHVV 124
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPF-KLGEMPTNYGG 277
V+ E +E + E ++ + G+E + W Y +DD LPF + ++P +
Sbjct: 125 GVWMTGEEGQEEQREESDVKKVCEGVGVEFQ-LWRDEKYLIDDRDLPFDNIKDLPDVFTS 183
Query: 278 FREKVKGV--EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ---SAAMSQGGKP- 331
FR+ V+ + R T+ + L LP + P P + LSQ + KP
Sbjct: 184 FRKSVEPLNSRSRHTLPTPNSLPLLPPSSLIAPQAYPFTIPTSLSQLIEALYKPLIAKPD 243
Query: 332 ---------------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFS 376
+ + GG T R+K K ++G + G ++S
Sbjct: 244 HAMPDPTSTPPHPITSGHPFTGGATTGHSRIKHLITSSAMTNYKQTRNG----LLGEDYS 299
Query: 377 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
K+S WLA+GC++ R + + L K K G G+ W+ FELLWRD+ R
Sbjct: 300 TKLSAWLALGCITARQVHEYLVKLEEGSDELGKNAKGWGKGINEGTGWVRFELLWRDYMR 359
>gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
Length = 446
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 139/317 (43%), Gaps = 43/317 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRASFL 181
+ + WF N+LR+HDN L + ++ +YC+ P+ + + + G + FL
Sbjct: 4 KIGLYWFTNELRIHDNPLLAEVDKAVSELICIYCY-PKLPPFLTHFAQEAQFGQNKLRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ L +L AR L V P + + + +Y DE +KI +
Sbjct: 63 DESLHCLNLSLNARNQRLQVVDLLPYQAIKHAIEKLDVTHLYCDAFSGVDEQDVIDKIRS 122
Query: 242 AMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
I EV+ +L+ LDDLPF L +P + FR+ V+ + + K + + L
Sbjct: 123 DFPHLTICQREVR-----SLFALDDLPFSLENLPGTFTKFRKLVEKLPVSKPVATVSSLP 177
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+P E +P+L +G +S + GGE L+ +++ + A
Sbjct: 178 PIP-----EGLALPTLRLIGDGKSYLFN-----------GGEQAGLEHCQQYFSSISASD 221
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G +S K SPWLA GCLSP+ + L + A ND
Sbjct: 222 YKQTRNG----LDGMEYSTKFSPWLAHGCLSPKVICAMLSRYEHVNGA----ND------ 267
Query: 419 GAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 --STYWIYFELLWREYF 282
>gi|359436511|ref|ZP_09226610.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20311]
gi|358028804|dbj|GAA62859.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20311]
Length = 436
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 138/318 (43%), Gaps = 39/318 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + W +NDLR+ DN LN + + + V+ +P + ++ G ++ FL
Sbjct: 1 MKKRILYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNNYQQKPYGVHKQRFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ +L++++ G L + G P VL + + D V +++ V + +I A
Sbjct: 61 MQSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQIG---VYEQRQISA 117
Query: 242 AM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
K + K TLY LPF+L +PT + FR+K++ EI +
Sbjct: 118 LKSKCTTVVFKSVMQDTLYQQQQLPFELANLPTGFTPFRKKIEAAEISLATHTFSAARLP 177
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK--GGETEALQRLKKFAAEYQAQP 358
P P +L A KPA + + GG AL+ +++ + +
Sbjct: 178 P----------PIIL-------CAKQPIEKPATGNTQLLGGHQAALEHCQQY---FSSAL 217
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
P K + + G + S K S WLA GC+S + +F + T A
Sbjct: 218 PSSYKI-TRNELDGFDNSTKFSSWLAFGCISAKQIFCAVDAYETQYGA------------ 264
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 265 NESTYWIKFELLWREYFK 282
>gi|359447492|ref|ZP_09237086.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20439]
gi|358038590|dbj|GAA73335.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20439]
Length = 436
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 139/320 (43%), Gaps = 43/320 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + W +NDLR+ DN LN + + + V+ +P + +S G ++ FL
Sbjct: 1 MKKRILYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNSYQQKPYGVHKQRFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ +L++++ G L + G P VL + + D V +++ V + +I A
Sbjct: 61 MQSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQIG---VYEQRQISA 117
Query: 242 AM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
K + K TLY LPF+L +PT + FR+K++ EI +
Sbjct: 118 LKSKCTTVVFKSVMQDTLYQQQQLPFELANLPTGFTPFRKKIEAAEISLATHTFSAARLP 177
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK--GGETEALQRLKKFAAEYQAQP 358
P P +L A KPA + + GG AL+ +++ + +
Sbjct: 178 P----------PIIL-------CAKQPIEKPATGNTQLLGGHQAALEHCQQY---FSSAL 217
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
P K + + G + S K S WLA GC+S + +F + D
Sbjct: 218 PSSYKI-TRNELDGFDNSTKFSSWLAFGCISAKQVFCAV--------------DAYEAQY 262
Query: 419 GAG--SNWLMFELLWRDFFR 436
GA + W+ FELLWR++F+
Sbjct: 263 GANESTYWIKFELLWREYFK 282
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 544
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 146/324 (45%), Gaps = 39/324 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFL 181
S++WFR +R+HDN +L A + + PV+ DP D S G + G R FL
Sbjct: 7 SLMWFRKGIRIHDNPALEYAAKGAKFLYPVFVIDPHYMEPDPSAFSLGSSRAGLNRIRFL 66
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES+ DL NL+ GS L+V G+P VL+ K + + + +++
Sbjct: 67 LESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDTDPYYQALDIRVQN 126
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
GIEV TL++ D+ K G P +Y F K+ G + L
Sbjct: 127 HASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFL-KLAGEPSWACAPLSTTVSSL 185
Query: 301 PSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK------FA 351
P GD E D+P++ DLG A K +GGETEAL+RLK+ +
Sbjct: 186 PPVGDTGRSEISDVPTIKDLGYEDMA------KDDWTPFRGGETEALKRLKESMSNKDWV 239
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A+++ PKG+ S + + +SP+L GCLS R + +++ ++
Sbjct: 240 AKFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYQCIQEIYKNVK------ 286
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
G + + L+ +LLWR+FF
Sbjct: 287 -GHTSPPVS----LVGQLLWREFF 305
>gi|153831636|ref|ZP_01984303.1| cryptochrome dash [Vibrio harveyi HY01]
gi|148872146|gb|EDL70963.1| cryptochrome dash [Vibrio harveyi HY01]
Length = 450
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 49/317 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR-----DYGKSSSGFDKTGPYRASFL 181
+ WF NDLR+HDN L A+ E +++ VYC+ P+ + S F G + FL
Sbjct: 7 LYWFTNDLRMHDNPLLTRASEEVDALICVYCY-PKLSPFLAHFAQESMF---GSAKQQFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ L +L A L V P + + +G +Y +E + I
Sbjct: 63 DESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEKLGVTHLYCDAFSGSEEQDVVDHIRQ 122
Query: 242 AMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ I EV+ +L+ ++DLPF L ++P + FR+K + V + + + L
Sbjct: 123 ESEHLTICQQEVR-----SLFTVEDLPFALEDLPDTFTKFRKKAEKVSLAEPFVTVTALP 177
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
PS +P+L + + KP GGE L+ +++ + A
Sbjct: 178 LTPS-----GLALPTL---------RLIRDVKPCL--FTGGEQAGLEHARRYFSSTLASE 221
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G ++S K SPWLA GCLSP++++ LK+ A
Sbjct: 222 YKQTRNG----LDGMDYSTKFSPWLANGCLSPKTIYAMLKRYERLKGA------------ 265
Query: 419 GAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 266 NESTYWIYFELLWREYF 282
>gi|153837520|ref|ZP_01990187.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
gi|149749116|gb|EDM59921.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
Length = 445
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 140/320 (43%), Gaps = 47/320 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYC---FDPRDYGKSSSGFDKTGPYRAS 179
++ + WF DLR+HDN L A++ ++ +YC P + + G R
Sbjct: 3 KKIGLYWFTFDLRLHDNLLLVNASSFLDELVCLYCRPSVTPFLHHFAQEA--TLGRARQK 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ S+ +L L G L P L + +G +YA DE + I
Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLGVTHLYADAMAGSDE----QSI 116
Query: 240 EAAMKDE--GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++DE + + +L+ LPF L ++P + FR+ V+G++I I+A
Sbjct: 117 LHKLQDEYPHLVIVQHAVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDA---- 172
Query: 298 KGLPSRGDVEPGD--IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
PSR P D +P+L +SA S GGE L +++ +
Sbjct: 173 ---PSRLPPTPKDAQLPTLSSFYFDESALFS-----------GGEWSGLAHCRRYFSSGL 218
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
A K ++G + G +S K SPWLA+GC+SPR ++ LK+ + A ND
Sbjct: 219 ASSYKETRNG----LDGMAYSTKFSPWLALGCVSPRMIYAMLKQYEQTQGA----ND--- 267
Query: 416 GSSGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 -----STYWIYFELLWREYF 282
>gi|308126141|ref|ZP_05908184.2| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
gi|308110402|gb|EFO47942.1| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
Length = 445
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 140/318 (44%), Gaps = 43/318 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYC---FDPRDYGKSSSGFDKTGPYRAS 179
++ + WF DLR+HDN L A++ ++ +YC P + + G R
Sbjct: 3 KKIGLYWFTFDLRLHDNLLLVNASSFLDELVCLYCRPSVTPFLHHFAQEA--TLGRARQK 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ S+ +L L G L P L + +G +YA DE + I
Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPYQALRYAIQYLGVTHLYADAMAGSDE----QSI 116
Query: 240 EAAMKDE--GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++DE + + +L+ LPF L ++P + FR+ V+G++I I+A +L
Sbjct: 117 LHKLQDEYPHLVIVQHAVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPSRL 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
+P + +P+L +SA S GGE L +++ + A
Sbjct: 177 PPMP-----KDAQLPTLSSFYFDESALFS-----------GGEWSGLAHCRRYFSSGLAS 220
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + G +S K SPWLA+GC+SPR ++ LK+ + A ND
Sbjct: 221 SYKETRNG----LDGMAYSTKFSPWLALGCVSPRMIYAMLKQYEQTQGA----ND----- 267
Query: 418 SGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 ---STYWIYFELLWREYF 282
>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
Length = 1646
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 155/364 (42%), Gaps = 70/364 (19%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA + ++VWFR LRVHDN +L+ + + PV+ DP S + G R
Sbjct: 1095 AAAKGRTLVWFRKALRVHDNPALSRGTLHATACQPVFVLDPWFCQPS-----RVGANRMR 1149
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL++S+ DL L+ARGS L+V G+P VL K D+V ++ + +
Sbjct: 1150 FLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRDAAV 1209
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEI-RKTIEALDQL 297
A++ G+E G TLY +D++ K G PT Y GF + V + I+A++++
Sbjct: 1210 RGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAPIDAMEKM 1269
Query: 298 KGLPSRGDVEPG----------DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL 347
G + D E IP+L DLG G P GGETE L+RL
Sbjct: 1270 PGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLG--DDEGFPGV----GGETEGLRRL 1323
Query: 348 ------KKFAAEYQA-----------------QPPKG--------NKDGNHDSIYGANF- 375
K++ +++ PK +KDG+ S GA
Sbjct: 1324 RLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDA-STSGAEAL 1382
Query: 376 ----SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 431
+ +SP++ GC+SPR + EL + G LM +L+W
Sbjct: 1383 MIPSTTALSPYMKFGCVSPRVFYHELTAVYKEL----------EGKHSKPPTSLMGQLMW 1432
Query: 432 RDFF 435
R+F+
Sbjct: 1433 REFY 1436
>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
Length = 559
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 156/367 (42%), Gaps = 70/367 (19%)
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
+ AA + ++VWFR LRVHDN +L+ + + PV+ DP S + G
Sbjct: 5 STSAAAKGRTLVWFRKALRVHDNPALSRGTLHATACQPVFVLDPWFCQPS-----RVGAN 59
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R FL++S+ DL L+ARGS L+V G+P VL K D+V ++ +
Sbjct: 60 RMRFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRD 119
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEI-RKTIEAL 294
+ A++ G+E G TLY +D++ K G PT Y GF + V + I+A+
Sbjct: 120 AAVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAPIDAM 179
Query: 295 DQLKGLPSRGDVEPG----------DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
+++ G + D E IP+L DLG G P GGETE L
Sbjct: 180 EKMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLG--DDEGFPGV----GGETEGL 233
Query: 345 QRL------KKFAAEYQA-----------------QPPKG--------NKDGNHDSIYGA 373
+RL K++ +++ PK +KDG+ S GA
Sbjct: 234 RRLRLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDA-STSGA 292
Query: 374 NF-----SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 428
+ +SP++ GC+SPR + EL + G LM +
Sbjct: 293 EALMIPSTTALSPYMKFGCVSPRVFYHELTAVYKEL----------EGKHSKPPTSLMGQ 342
Query: 429 LLWRDFF 435
L+WR+F+
Sbjct: 343 LMWREFY 349
>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 595
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 137/322 (42%), Gaps = 42/322 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFR LR+HDN +L A ++ V PV+ DP +SS K R +FL+ES+
Sbjct: 7 SIIWFRKGLRLHDNPALLEACKDAKHVYPVFVLDPHFLQQSSY---KVSVNRYNFLLESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAV-YAHREVSHDEVKSEEKIEAAMK 244
DL+++ QARGS L+V GKPE V + + G + + H + +V+ + +
Sbjct: 64 EDLQRSFQARGSRLLVLRGKPEEVFPRVFREWGVTQLCFEHDTEPYAKVR-DAAVRRLAA 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV------EIRKTIEALDQL 297
+ G+EV TLY D L + G P F + V V
Sbjct: 123 EAGVEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKLVDRVGDPPAPAPDPPAAMPPPA 182
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
+ +PS G +P+ ++G + P KGGETEAL RL E Q
Sbjct: 183 EDMPSAAPAATG-VPTWQEVGFKE---------PPLTVFKGGETEALARL-----EAAFQ 227
Query: 358 PPKG----NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
PK K S + + +SP+L GCLS R L + A S+
Sbjct: 228 DPKWVAGFQKPDTDPSAWEKPATTVLSPYLKFGCLSARLFHARLLEVYRRHPAHSQPPVS 287
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
G +LLWR+FF
Sbjct: 288 LRG-----------QLLWREFF 298
>gi|449436599|ref|XP_004136080.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 549
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 140/322 (43%), Gaps = 30/322 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFL 181
S++WFR +R+HDN +L A + + PV+ DP D S G + G R FL
Sbjct: 7 SLMWFRKGIRIHDNPALEYAAKGAKFLYPVFVIDPHYMEPDPSAFSLGSSRAGLNRIRFL 66
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES+ DL NL+ GS L+V G+P VL+ K + + + +++
Sbjct: 67 LESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDTDPYYQALDIRVQN 126
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
GIEV TL++ D+ K G P +Y F K+ G + L
Sbjct: 127 HASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFL-KLAGEPSWACAPLSTTVSSL 185
Query: 301 PSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK----FAAE 353
P GD E D+P++ DLG A K +GGETEAL+RLK+
Sbjct: 186 PPVGDTGRSEISDVPTIKDLGYEDMA------KDDWTPFRGGETEALKRLKESMSFLIGS 239
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
Q K K S + + +SP+L GCLS R + +++ ++ G
Sbjct: 240 LQDWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCIQEIYKNVK-------G 292
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
+ + L+ +LLWR+FF
Sbjct: 293 HTSPPVS----LVGQLLWREFF 310
>gi|407924950|gb|EKG17973.1| Cryptochrome/DNA photolyase class 1 [Macrophomina phaseolina MS6]
Length = 654
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 162/382 (42%), Gaps = 78/382 (20%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVS-------VLPVYCF----------------DP 160
R I R DLR+ DN + + + S VLPVY P
Sbjct: 7 RILIYLLRRDLRLSDNPVFHHLSQQCGSNSSSFTHVLPVYVIPANQVEVSGFLRPGTQSP 66
Query: 161 RDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA 219
+S +GF + GP+RA FL ESV DL+ +L GSDL++RVG VL ++ G
Sbjct: 67 YPEARSQVAGFWRCGPHRAKFLAESVWDLKTSLGKIGSDLIIRVGMVGDVLQDMLSWYGK 126
Query: 220 D-----------------AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262
+ ++ E +E + E A G+E+K W Y +D
Sbjct: 127 NPDIPNGDTDGEGKGTIAGIWMTAEEGVEEQREERDARRAADASGVELK-LWADEKYFVD 185
Query: 263 --DLPF-KLGEMPTNYGGFREKVKGVEIR--------KTIEALDQLKGLPSRGD--VEPG 309
DLPF + ++P Y FR+ ++ + R K++ +L +P + P
Sbjct: 186 DRDLPFTDIKDLPDVYTTFRKSLEPLRERPRPTTSMPKSLPSLPPASSIPPQAGPFTSPE 245
Query: 310 DIPSLLD-LGLSQSAAMSQ-------GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ S++D L AM+ G +A+ +GGET A R+ A K
Sbjct: 246 SLSSMIDSLHKPIDLAMAMENPPQWPSGAKSAHPFEGGETAAQNRVSHLIASGSMANYKE 305
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK-------KTATSISAASKWNDGE 414
++G + G ++S K+S WLA+GC++ R + L S AA + GE
Sbjct: 306 TRNG----LLGEDYSTKLSSWLALGCVTARQVHASLAAYEDGSPNAPDSWKAAPGYGQGE 361
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
+ AG+ + FELLWRD+ R
Sbjct: 362 N----AGTAAVRFELLWRDYMR 379
>gi|343510119|ref|ZP_08747374.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
gi|342803146|gb|EGU38524.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
Length = 446
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 137/310 (44%), Gaps = 35/310 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD-KTGPYRASFLIESV 185
+ WF DLR+ +N L A E +++ +YC + + + + FL +S
Sbjct: 7 LYWFTQDLRIENNPLLQRAAQEVDTLICLYCVPKMTRFITHYAHEHRFSAAKIQFLSQSA 66
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+K+L A G LVV P L + D +Y V DE + +++
Sbjct: 67 KCLQKSLTALGQQLVVTTSTPYAKLQRIIHDHSVDHLYCDAFVGTDEKQVLRQLKEQFPS 126
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ + +L+ DLPF+L +P+ + FR K +E LD+ P+R +
Sbjct: 127 LIVTQDHV--RSLFRKSDLPFELNALPSTFTQFR---------KQVEELDK----PAR-N 170
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+P L + ++ +PA +GGE L ++ Y + P +
Sbjct: 171 TTTTRLPPPLQIQFEETWPKLPPTQPAL--FEGGELAGLTHCQR----YFSSPLPQHYKQ 224
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + G ++S K+SPWLA+GCLSP ++ L + ++ + G + + + W+
Sbjct: 225 TRNELDGMDYSTKLSPWLAIGCLSPCTILSMLAE-----------HEHQFGRNES-TYWI 272
Query: 426 MFELLWRDFF 435
FELLWR++F
Sbjct: 273 SFELLWREYF 282
>gi|333906605|ref|YP_004480191.1| DASH family cryptochrome [Marinomonas posidonica IVIA-Po-181]
gi|333476611|gb|AEF53272.1| cryptochrome, DASH family [Marinomonas posidonica IVIA-Po-181]
Length = 439
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 135/313 (43%), Gaps = 32/313 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VWF NDLR D + L A E ++ +YC +P S R FL +
Sbjct: 2 KMGLVWFGNDLRCTDQQMLWRAAQEVDQLICLYCDEPEHTRPSRYATQGMSDNRRQFLYQ 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ L + L + G L V L L + +Y + +E +S + +
Sbjct: 62 GLDSLAQQLDSLGHPLFVSQLDAINSLTLLLNELPISHIYMNHRAGWNEQESLRHLTSQF 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
D + + G +L+ LPF + E+P + FR ++ + I + + ++ QL
Sbjct: 122 SDVRFHIDH--GQSLFEAWRLPFNITELPDTFSKFRRQITSLNITEPLPSILQL------ 173
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
P + L+Q A + GGE A Q+LK + + + P+ K
Sbjct: 174 --------PLPVHCSLTQIQAWQIRPVTTESLFTGGEKAAQQQLKYY---FNSNLPRHYK 222
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+++ G S K S WLA G LSP+ + I+A +K+ + E G++ + ++
Sbjct: 223 QVR-NALAGWENSTKFSAWLAQGSLSPKQV----------IAALTKY-EAEQGANES-TD 269
Query: 424 WLMFELLWRDFFR 436
W+ FELLWR++F
Sbjct: 270 WIYFELLWREYFH 282
>gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
Length = 441
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 40/323 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYG----KSSSGFDK--TGPYRASF 180
+ WF +DLR+ DN L + + +Y F+ D+ K + F++ G +R F
Sbjct: 5 LYWFEHDLRLADNLPLQQTIAQIDQLHCIYIFNAADFSTTKKKGAGQFNQRHMGQHRYRF 64
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAV--YAHREVSHDEVKSEEK 238
+ +++ DL+ L G L + G+P ++ +L + + H V + S K
Sbjct: 65 IRQALDDLQSQLHTFGQQLHIYYGEPLDIIEQLNTQFNFTHIGKHFHTGVYERNLISALK 124
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQL 297
I+ K Y TLY +DDLP + +P + FR KV K E R AL
Sbjct: 125 IQYPNKTIINTNSY----TLYDIDDLPMSIENLPDVFSPFRRKVEKFCEARLPDNALP-- 178
Query: 298 KGLPSRGDVE---PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
P E P ++P++ + +++ + GGE +A +++ +
Sbjct: 179 VSFPPVVVAEQNMPDELPAI---QVCDKKLLAK--NETVQRLIGGELKAKEQMHHYTYGT 233
Query: 355 QA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
QA K ++G + G FS K+SPWLA GC+SPR ++AA +
Sbjct: 234 QALSEYKETRNG----LEGWEFSSKLSPWLAAGCISPR-----------QVAAAITEYEA 278
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
+ G++ + + WL FELLWR+FF+
Sbjct: 279 QHGANDS-TYWLFFELLWREFFQ 300
>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 147/329 (44%), Gaps = 38/329 (11%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPY 176
A R S++WFR LRVHDN +L A+ S + PV+ DP D S G + G
Sbjct: 2 ATRSGSLIWFRKGLRVHDNPALEFASKGSEFMFPVFVIDPHYMESDPSAFSPGSSRAGVN 61
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R FL+ES+ DL +L+ GS L+V G+P VL + + + +
Sbjct: 62 RIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCFEYDTDPYYKALD 121
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALD 295
K++ G+EV TL++ D+ K G+ P +Y F K+ G E +
Sbjct: 122 VKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFL-KIAGEPSCAKSELVM 180
Query: 296 QLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK--- 349
LP GDV ++PSL +LG + +GGE+EAL+RL K
Sbjct: 181 SYSSLPPVGDVGNLGISEVPSLEELGYRDDDEQADW-----TPFRGGESEALKRLTKSIS 235
Query: 350 ---FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
+ A ++ PKG+ S + + +SP+L GCLS R + L+
Sbjct: 236 DKAWVANFEK--PKGDP-----SAFLKPATTVMSPYLKFGCLSSRYFYQCLQNI------ 282
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ D + +S S L+ +LLWR+FF
Sbjct: 283 ---YKDVKKHTSPPVS--LLGQLLWREFF 306
>gi|380473816|emb|CCF46101.1| DASH family cryptochrome [Colletotrichum higginsianum]
Length = 711
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 153/365 (41%), Gaps = 56/365 (15%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN----TANNESVSVLPVYCF----------------DP 160
A+ I R+DLR+ DN L+ TA + VLPVY F P
Sbjct: 2 AVPNILIYLLRHDLRIADNPVLHHLATTAEHGFTHVLPVYVFPAHQIEISGFLRENAKSP 61
Query: 161 RDYGKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG- 218
+S G F + G +R F+ ESV +L+++L+ GS L +R G+ V +L +
Sbjct: 62 YPEARSQIGKFWRCGHHRTKFVAESVWNLKESLEKVGSGLALRAGRFGDVAEDLLQGFAD 121
Query: 219 ----ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFKL-GEM 271
A++ E + +E K EE + A K G+ K W Y +DD L FK E+
Sbjct: 122 KQQKVGAIWMTSEEAIEEKKDEEDVSTACKKHGVAFKT-WLDEKYFIDDRDLHFKSPDEL 180
Query: 272 PTNYGGFREKVKGVEIRKTIEALDQLKG-LPSRGDVE-------PGDIPSLLDLGLSQSA 323
+ FR+ + + + KG LP D + P DIPS D +SA
Sbjct: 181 ADVFTAFRKTQEPLREKPRPTLPPPSKGSLPPYPDQDTLPPQRSPFDIPSTFDA--LESA 238
Query: 324 AMSQGGKP------------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY 371
+ P + + +GGE ALQRL K ++G +
Sbjct: 239 LLKPLTSPFSDEPEFPENAQSVHPFQGGEGVALQRLDHLVKTGAMSSYKDTRNG----LL 294
Query: 372 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 431
G +FS K+S +L+ GCL+ R + + + + K G G+ + FELLW
Sbjct: 295 GVDFSTKLSAYLSFGCLTSRQIHEAMVRFEDGQDDKFKGTPGYGKGENDGTKAVRFELLW 354
Query: 432 RDFFR 436
RD+ R
Sbjct: 355 RDYMR 359
>gi|79313247|ref|NP_001030703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 445
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 146/330 (44%), Gaps = 27/330 (8%)
Query: 114 LDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSG 169
L+P A S++WFR LRVHDN +L A+ S + PV+ DP D S G
Sbjct: 14 LNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPG 73
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS 229
+ G R FL+ES+ DL +L+ GS L+V G+P VLV + + +
Sbjct: 74 SSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTD 133
Query: 230 HDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIR 288
+ K++ G+EV TL++ + K G+ P +Y F KV G
Sbjct: 134 PYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFL-KVAGEPSC 192
Query: 289 KTIEALDQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQ 345
E + LP GD+ ++PSL +LG + +GGE+EAL+
Sbjct: 193 AKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDE------QADWTPFRGGESEALK 246
Query: 346 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
RL K ++ +A K S + + +SP+L GCLS R + L+
Sbjct: 247 RLTKSISD-KAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNI----- 300
Query: 406 AASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ D + +S S L+ +LLWR+FF
Sbjct: 301 ----YKDVKKHTSPPVS--LLGQLLWREFF 324
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
defective 3
gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 556
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 148/336 (44%), Gaps = 39/336 (11%)
Query: 114 LDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSG 169
L+P A S++WFR LRVHDN +L A+ S + PV+ DP D S G
Sbjct: 14 LNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPG 73
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS 229
+ G R FL+ES+ DL +L+ GS L+V G+P VLV + + +
Sbjct: 74 SSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTD 133
Query: 230 HDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIR 288
+ K++ G+EV TL++ + K G+ P +Y F KV G
Sbjct: 134 PYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFL-KVAGEPSC 192
Query: 289 KTIEALDQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQ 345
E + LP GD+ ++PSL +LG +GGE+EAL+
Sbjct: 193 AKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADW------TPFRGGESEALK 246
Query: 346 RLKK------FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 399
RL K + A ++ PKG+ S + + +SP+L GCLS R + L+
Sbjct: 247 RLTKSISDKAWVANFEK--PKGDP-----SAFLKPATTVMSPYLKFGCLSSRYFYQCLQN 299
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ D + +S S L+ +LLWR+FF
Sbjct: 300 I---------YKDVKKHTSPPVS--LLGQLLWREFF 324
>gi|387015302|gb|AFJ49770.1| Cryptochrome-2-like [Crotalus adamanteus]
Length = 590
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 148/337 (43%), Gaps = 54/337 (16%)
Query: 116 PNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGP 175
P +G S+ WFR LR+HDN +L A E+ SV +Y DP S+ G +
Sbjct: 11 PRSGGGC--CSVHWFRRGLRLHDNPALQAAIREATSVRCIYILDPWFAASSAVGIN---- 64
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL++S+ DL +L+ S L V G+P V L K G H +D
Sbjct: 65 -RWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGV----THLTFEYDSEPF 119
Query: 236 EEKIEAAM----KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK- 289
E+ +AA+ K+ G++V TLY LD + G P Y F+ + +++ K
Sbjct: 120 GEERDAAIVKLAKEAGVKVTTENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMDLPKK 179
Query: 290 -----TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
T + ++ + E +PSL +LG ++G PA +GGETEAL
Sbjct: 180 PVSTITSQQMEMCQTKIQENHDETYGVPSLEELGF-----FTEGLAPAV--WQGGETEAL 232
Query: 345 QRL------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
RL K + A Y+ P+ N + S G +SP+L GCLS R + L
Sbjct: 233 TRLDKHLERKAWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLW 284
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ + + S+ S L +LLWR+FF
Sbjct: 285 ELYKKV---------KRNSTPPLS--LYGQLLWREFF 310
>gi|312881360|ref|ZP_07741157.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
gi|309371000|gb|EFP98455.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
Length = 431
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 139/325 (42%), Gaps = 57/325 (17%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVY------CFDPRDYGKSSSGFDKTGPY 176
+R + WF NDLR+ DN L+ A+ E ++ +Y CF + S ++ G
Sbjct: 3 KRIGLYWFTNDLRLTDNPLLHKASKEVDQLICLYTRPQLTCFLQK-----YSCQERWGAA 57
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPET-VLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +S+ +L ++L G L V V +P L +L +Y ++ DE
Sbjct: 58 RTLFLNQSLRNLSESLDDVGQQLTV-VDEPTIGTLSDLVTKHEVSDLYCNQFAGFDEQSV 116
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALD 295
E++ D I + LY + LPF L +P + FR+ V+G+ +R+ +E
Sbjct: 117 IEQLGRNFSDLIIHQNS--SNHLYSEEQLPFALNGLPNTFTKFRKLVEGISLRELVEV-- 172
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK-----GGETEALQRLKKF 350
P P + +G PA M+ GGE + ++
Sbjct: 173 ------------PRLPPPIKSVGRGVQI-------PAEKQMQSVEFLGGEVFGMDHCLRY 213
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
+ +A K ++G + G ++S K SPWLA GC+SPR + + L+
Sbjct: 214 FSTKRASEYKLTRNG----LDGPSYSTKFSPWLAHGCISPRQVLEVLRDYE--------- 260
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ + + W+ FELLWR+FF
Sbjct: 261 ---QKNGANESTYWIFFELLWREFF 282
>gi|310791128|gb|EFQ26657.1| DASH family cryptochrome [Glomerella graminicola M1.001]
Length = 705
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 154/360 (42%), Gaps = 58/360 (16%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVS-VLPVYCF----------------DPRDYGKS 166
I FR+DLR+ DN L+TA++ + VLP+Y F P +S
Sbjct: 8 IYLFRHDLRIADNPIIHHLSTASDHGFTHVLPIYVFPAHQIEISGFLREGSKSPYPEARS 67
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----AD 220
G F + GP+R F+ +SV +L+++L++ S L +R GK V+ +L ++
Sbjct: 68 QIGKFWRCGPHRTKFVAQSVWNLKESLESVHSGLALRAGKFGDVVDDLLRSFADKKQKVG 127
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL---GEMPTNYGG 277
AV+ E S +E + E+ + AA + G+ K W Y +DD E+ +
Sbjct: 128 AVWMTAEESVEEKRDEKAVSAACEKHGVAFKT-WTDEKYFIDDRDLHFESPSELADVFTA 186
Query: 278 FREKVKGVEIRKTIEALDQLKG-LPSRGDVE-------PGDIPSLLDLGLSQSAAMSQGG 329
FR+ + + + KG LP D P IPS D + AA+ +
Sbjct: 187 FRKTQEPLREKPRPTLPHPKKGSLPPYPDQSIIPPQRTPFQIPSTYD---ALEAALLKPL 243
Query: 330 KPAANS-------------MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFS 376
K N KGGE A++RL+ K ++ + G +FS
Sbjct: 244 KSPFNEEPKFPENAKSVHPFKGGEDFAIERLEHLVKTGSVSSYKDTRN----EMLGVDFS 299
Query: 377 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
K+S +LA+GCL+ R + + L K K G G+ + FELLWRD+ R
Sbjct: 300 TKLSAYLALGCLTSRQIHEALVKYEDGQDDRFKETPGYGKGENDGTKAVRFELLWRDYMR 359
>gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
Length = 436
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 141/316 (44%), Gaps = 35/316 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + W +NDLR+ DN LN + + + V+ +P + ++ G ++ FL
Sbjct: 1 MKKRILYWLQNDLRIDDNPILNDLSQQQCELDIVFVINPAWFKSNNYQQKPYGVHKQRFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ +L++++ G L + G P VL + +G D V ++ V + +I A
Sbjct: 61 MQSLYELQESVLGLGQTLHILEGDPVRVLTQRINELGIDEVVYSEQIG---VYEQRQITA 117
Query: 242 AM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
K + K TLY LPF+L ++PT + FR+K++ I L +
Sbjct: 118 LKSKCATVVFKSVMQDTLYQQQQLPFELADLPTGFTPFRKKIEATGIS--------LSSV 169
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
P +P + L Q + G P ++GG L ++ + + P
Sbjct: 170 P----FSAKRLPPPIILCAKQPISEPPTGNPL---LQGGHKAGLAHCLQY---FSSALPS 219
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
K + + G + S K S WLA GC+S + +F + A + GE+ S
Sbjct: 220 SYKI-TRNELGGFDNSTKFSSWLAFGCISAKQIFCAVD--------AYEAQHGENES--- 267
Query: 421 GSNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 268 -TYWIKFELLWREYFK 282
>gi|74696815|sp|Q7SI68.1|CRYD_NEUCR RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags:
Precursor
gi|38567324|emb|CAE76612.1| related to deoxyribodipyrimidine photo-lyase [Neurospora crassa]
Length = 745
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 156/362 (43%), Gaps = 55/362 (15%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVS-----VLPVYCF----------------DPRD 162
+ I R +LR+ DN + +N +LPVY F +P
Sbjct: 5 KVVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHP 64
Query: 163 YGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVEL-----AKA 216
KS+ G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L AK
Sbjct: 65 APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKE 124
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP---FKLGEMPT 273
AV+ +E E+ + + GI+ K W Y + D L ++P
Sbjct: 125 CQVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLNDLPD 183
Query: 274 NYGGFREKVKGV--EIRKTIEALDQLKGLPSRGDVE-----------PGDIPSLLDLGLS 320
+ +R++++ + + RKT+ ++ LP+ D++ PG L+D +
Sbjct: 184 VFTTYRKQIEPLREKARKTLPVPEK-GALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVR 242
Query: 321 QSAAMSQG------GKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN 374
+ +++ +GGET A +R+ + K +++G + G +
Sbjct: 243 PVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNG----LLGPD 298
Query: 375 FSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
FS K+S +LA GC++ R + L K DG G+ + ELLWRD+
Sbjct: 299 FSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDY 358
Query: 435 FR 436
R
Sbjct: 359 MR 360
>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
CCMP1335]
gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1, partial [Thalassiosira pseudonana
CCMP1335]
Length = 556
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 138/335 (41%), Gaps = 53/335 (15%)
Query: 125 ASIVWFRNDLRVHDN----ESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
++ WFR LRVHDN +L + S + PVY DP Y K RA F
Sbjct: 14 VAMHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQ-----LLKCSVLRARF 68
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHD--EVKSEEK 238
L+E +SDL K+L+ RGS L V G P VL EL K G V + + + V +E
Sbjct: 69 LLECISDLDKSLRERGSRLYVATGDPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEG 128
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + K G++V F TL L ++P GG+ V G + + +
Sbjct: 129 VRSVAKKNGVQVMEFRSETLRPLGNVP----------GGYVANVGGA-VNSVPSTMSSFQ 177
Query: 299 GLPSRGDVEPGDIPSLLD-------------------LGLSQSAAMSQGGKPAANSMKGG 339
GL R ++ G+IP LD L L + +KGG
Sbjct: 178 GLLGR--IDGGNIPLPLDAPTKEEFPQLSDDDDSNKYLPLEHPSDCEDAS--LTGIVKGG 233
Query: 340 ETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 399
ET AL +L+ K + + +SP+L++GCLSPR + +
Sbjct: 234 ETLALAQLQSTVTARPDWTASFEKPKTSCTEVSTPSTTVLSPYLSLGCLSPRKAWHAVAD 293
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
+ A+SK N + S G +LLWRDF
Sbjct: 294 --ANRKASSKVNKTKPPVSLHG------QLLWRDF 320
>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
Length = 472
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 137/310 (44%), Gaps = 39/310 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR DLR+ D+E+L A + V+PV+ +D + G L SV+
Sbjct: 7 LMWFRRDLRLGDHEALTAACDADRPVIPVFIYDELT--------ESMGAAPKMRLGLSVA 58
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL +L +GS L++R GK VL EL K GAD VY R D + ++AA+KD+
Sbjct: 59 DLAASLNEKGSKLILRRGKALDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVKAALKDD 118
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI + F G L F+ + T GGF + + K++ D LP+ G +
Sbjct: 119 GITAESFKGHVL-------FEPWTVETKIGGFYKVY--TPMWKSVRGNDVPAALPTPGTI 169
Query: 307 E-PGDIPSLLDLGLSQ-SAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
P P D+ Q AAM +G + GE A RL F A + A K N+D
Sbjct: 170 PVPDSWPKSDDIADWQMDAAMHRGADTLKSHCTVGEAAASHRLGAFIANHVANYVK-NRD 228
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
+ + + +S L G +SPR + S NDG+ +
Sbjct: 229 -----LPAVDGTSGLSENLTYGEISPRKCWH---------SGWQALNDGKGDAET----- 269
Query: 425 LMFELLWRDF 434
+ EL+WR+F
Sbjct: 270 FLKELVWREF 279
>gi|432852920|ref|XP_004067451.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 521
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 138/320 (43%), Gaps = 38/320 (11%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
I WFR LR+HDN +L A + + P++ DP Y ++ +G + R FLI S
Sbjct: 4 VCIHWFRKGLRLHDNPALMAALRDCKELYPLFILDPYLYDQNLAGIN-----RLRFLISS 58
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V GKPE VL +L + + ++ + +
Sbjct: 59 LQDLDCSLRKLNSRLFVVRGKPEEVLPKLFTKWNVTKLTYEYDTEPYSRSRDKNVTMLAE 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRK------TIEALDQL 297
++ I+V Y TLY +D + + G+ P Y R+ VK + K T+E + +
Sbjct: 119 EQRIQVIYKISHTLYDIDRIIEENNGKPPLTYNRLRDIVKALGSPKKPIPAPTVEDMKNI 178
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE--YQ 355
+ E G IPSL +LGL S+ A GGE EAL+RL + +
Sbjct: 179 APFSEKHKPEYG-IPSLEELGLDTSSL-------AEEIFPGGEQEALRRLDTYMQRPGWV 230
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K N N S + +SP++ GCLS R+ + L + K +D
Sbjct: 231 CSFEKPNTSPNSLS----PSTTVLSPYVTFGCLSARTFWWRL----AEVYQGKKHSDPPV 282
Query: 416 GSSGAGSNWLMFELLWRDFF 435
G +LLWR+FF
Sbjct: 283 SLHG--------QLLWREFF 294
>gi|156977901|ref|YP_001448807.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
gi|156529495|gb|ABU74580.1| hypothetical protein VIBHAR_06693 [Vibrio harveyi ATCC BAA-1116]
Length = 460
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 51/318 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR-----DYGKSSSGFDKTGPYRASFL 181
+ WF NDLR+HDN L A+ E +++ VYC+ P+ + S F G + FL
Sbjct: 17 LYWFTNDLRMHDNPLLARASEEVDALIFVYCY-PKLSPFLAHFAQESMF---GSAKQQFL 72
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ + L A L V P + + + +Y +E + I
Sbjct: 73 DESLHCVNLTLNAFDQRLQVVDLHPYQAIKHAVEKLCVTHLYCDTFPGSEERDVVDHIRQ 132
Query: 242 AMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
++ I EV+ +L ++DLPF L ++P + FR+K + V + + + L
Sbjct: 133 ELEHLTICQQEVR-----SLLTVEDLPFALEDLPDTFTKFRKKAENVSLEEPFATVTALP 187
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQ-SAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
PS GL+ + + + KP GGE L+ +++ + A
Sbjct: 188 PTPS---------------GLALPTLRLIRDVKPCL--FTGGEQAGLEHARRYFSSTLAS 230
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + G ++S K SPWLA GCLSP++++ LK+ A
Sbjct: 231 EYKQTRNG----LDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYERLKGA----------- 275
Query: 418 SGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 276 -NESTYWIYFELLWREYF 292
>gi|413955018|gb|AFW87667.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 404
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 41/234 (17%)
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGI--------------EVKYFWGSTLYHLDDLPFK 267
+YAH+E +E+ E + ++ I ++ WG+T+YH+DDLPF
Sbjct: 5 IYAHKETCSEELLVERLVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFP 64
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP----GDIPSLLDLGLSQSA 323
+ +P Y FR+ V+ + L G P ++ G +P+L LG S
Sbjct: 65 VSSLPDVYTQFRKAVESKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLG--PSV 122
Query: 324 AMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPW 382
S+ G GGE+ AL R+ + F + Q + K ++G + G ++S K SPW
Sbjct: 123 TKSEKGM----HFIGGESAALGRVHEYFWKKDQLKDYKVTRNG----MLGPDYSTKFSPW 174
Query: 383 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
LA G LSPR + +E+K+ A ND + W++FEL+WRD+FR
Sbjct: 175 LASGSLSPRYICEEVKRYEKQRVA----ND--------STYWVLFELIWRDYFR 216
>gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
Length = 438
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 149/314 (47%), Gaps = 45/314 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFRNDLR+HD+ L A + +L VY + PR ++ G R F+ ES+
Sbjct: 7 AIYWFRNDLRLHDHPGL-VAAAAADELLLVYLW-PRQ--RAWCNTQGLGEQRERFICESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS----EEKIEA 241
++L K+LQ G L+V G PE V+ +L + G +A++ + E ++ E+++
Sbjct: 63 TELAKDLQPLGQKLLVLQGSPELVIPDLVRDYGVNAIHTSQCAGSYETRALRVLRERLDI 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + G G++L+ D+ E+ ++ FR KV+ + +E L LP
Sbjct: 123 PVLEHG-------GNSLFQEKDVAALCPELLDSFSPFRRKVE--KQLTAVEPSRNLPQLP 173
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ V+ IP ++ P ++GG +RLK+F + K
Sbjct: 174 APPAVQFHSIPP------------ARTKPPLGLPLRGGSHAGQRRLKQFLDSGAIRQYKE 221
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++ D + G S +SPWL++G +S R I+AA ++ E G++ +
Sbjct: 222 TRN-CLDPLEG---SSTLSPWLSLGSISAR-----------EIAAAIAQHEAEQGANES- 265
Query: 422 SNWLMFELLWRDFF 435
+ WL FELLWR++F
Sbjct: 266 TYWLYFELLWREYF 279
>gi|403373370|gb|EJY86604.1| Cryptochrome 5 [Oxytricha trifallax]
Length = 570
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 153/325 (47%), Gaps = 39/325 (12%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A ++ +I WFR LR+HDN+ L +++ ++LP++ DP + K+ +K G R
Sbjct: 3 ALSKKLNIYWFRKALRLHDNKGLIDSSSTCTNLLPIFILDPW-FVKNE---EKVGTNRMK 58
Query: 180 FLIESVSDLRKNLQAR-GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
FLI+S+ DL K+LQ S+LV+ G+P + +LA ++ +Y + + K
Sbjct: 59 FLIDSLIDLNKSLQKEYDSNLVILYGQPAEIFEKLAHE--SEKLYFELDTEPYAQDRDRK 116
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + G++V G TL L DL GE NYG F++ ++ +I ++ +L
Sbjct: 117 VVQICEKAGVQVHRNTGHTLLKLSDLA-DAGETCKNYGDFQKFMRDKKIESPLDKPKELP 175
Query: 299 GLPSRGD-------VE-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF 350
LP+ + +E D+PS+ DL + K GGET+AL+ ++++
Sbjct: 176 QLPNNYEKLLKHLKIEYSNDVPSISDL--------DRNEKDVTTHFIGGETKALEIMEEY 227
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
+ + + +S+ + + +SP+L GCLS R +++K S
Sbjct: 228 IKDKRRVNSFSKPFTSPNSLKPS--TTALSPYLKFGCLSIRLFHEKVKSVLRSDCTQPPV 285
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ L+ ++ WR+FF
Sbjct: 286 S-------------LIGQIYWREFF 297
>gi|348500170|ref|XP_003437646.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 522
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 143/324 (44%), Gaps = 45/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
I WFR LR+HDN +L A + + PV+ DP K+ G + R FLI +
Sbjct: 4 TCIHWFRKGLRLHDNPALMAALKDCKQLYPVFILDPYLQNKACVGIN-----RWRFLIGA 58
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V GKPE VL +L + + ++ + K+ + K
Sbjct: 59 LKDLDGSLRKLNSRLFVVRGKPEDVLPKLFTKWKVTRLAYEYDTEPYSLQRDSKVTSLAK 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV Y TLY++D + + G+ P Y + VK + K T++ + +
Sbjct: 119 EHGVEVIYKVSHTLYNIDRIIEENNGKPPLTYTKLQAIVKTIGPPKRPIPAPTMDDMKDV 178
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
K S + IP+L +LGL +A + + P GGE EAL+RL K+
Sbjct: 179 KTPSSENHEKEYGIPTLEELGLD-TAPLGEDLFP------GGEQEALRRLDEHMKRTKWV 231
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
++ N ++ +SP++ GCLS R+ + L T + +K +
Sbjct: 232 CSFEKPQTSPNSLSPSTTV--------LSPYVTFGCLSVRTFWWRL----TEVYRGNKHS 279
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
D G +LLWR+FF
Sbjct: 280 DPPVSLHG--------QLLWREFF 295
>gi|260220872|emb|CBA28873.1| hypothetical protein Csp_A09310 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 468
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 146/328 (44%), Gaps = 41/328 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
I WFR+D+R+ DN + A VL V F P + ++ G P R ++ +V
Sbjct: 24 IYWFRSDMRLQDNPAWTRACAMGRPVLAV-TFAPVLSAREAAWGIPGLSPSRKAWWAATV 82
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMK 244
+LR+ L A G L+V G LV L +A GA A+ V + E+ + ++++
Sbjct: 83 QELRRELDALGVSLLVLRGGSMEALVRLFEASGAVAL-----VCEEIAAPYERAQLSSLR 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPS 302
GI V W TL+ +DLPF + ++P + FR +V+ ++ R + A + G
Sbjct: 138 ASGIVVHSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFRTPLPAPVNVTGYDL 197
Query: 303 RGDVEPGDIPSLLDLGLS-------QSAAMSQGGKPAAN-------SMKGGETEALQRLK 348
D +D + +SA + G AN + G L+
Sbjct: 198 ACDA-VSFAEDFVDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGHAYLQ 256
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ + K ++G + G +S K SPWLA+G +S A + AA
Sbjct: 257 HYLESGRVAQYKATRNG----LTGMAYSSKWSPWLALGAVS-----------APELMAAL 301
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFFR 436
K ++ E G++ GS WL FELLWRD+FR
Sbjct: 302 KAHEREHGTTD-GSYWLWFELLWRDYFR 328
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 135/311 (43%), Gaps = 40/311 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR DN SL+ A E+ SV+P + FDP + + P R +F++ES+S
Sbjct: 5 VHWHRRDLRATDNHSLSAAA-ETGSVIPAFIFDP-------AVLEFASPPRVAFMLESLS 56
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR + RG DLVV G P L +A+ GA+ V +R+ S K +E++ A+ D
Sbjct: 57 ELRAWYRERGGDLVVATGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVREALTDA 116
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GIE + L+ + + GE Y F +K + E + A D + GD
Sbjct: 117 GIEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVSAPDGEQLASVSGD- 175
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
+PS LG P A G A +RL+ F A+ P D
Sbjct: 176 ---SLPSQEALGFDD---------PEATIPDAGMEAARRRLETFCAD----PIYRYADQR 219
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
D A+ + +SP L G + R++++ L + + E+ A +
Sbjct: 220 DDP--AADATSGLSPHLKWGTIGIRTVYEALDRAKS-----------EAPDEAAADSCEE 266
Query: 427 FE--LLWRDFF 435
FE L WR F+
Sbjct: 267 FESQLAWRAFY 277
>gi|152994374|ref|YP_001339209.1| cryptochrome DASH [Marinomonas sp. MWYL1]
gi|150835298|gb|ABR69274.1| Cryptochrome DASH [Marinomonas sp. MWYL1]
Length = 441
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 131/313 (41%), Gaps = 34/313 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VWF +DLR D L A E ++ +YC +P + S R L +
Sbjct: 2 KLGLVWFGDDLRCADQNMLWRAVQEVDYLICLYCDEPHNNHPSRYATQGMSANRRRLLNQ 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL LQA G L V T L L I +Y + DE ++ +IE+
Sbjct: 62 GLQDLALQLQALGQTLFVSSMDAATSLNLLLNEIPISHLYRNHHGGWDEQQTLNRIESRY 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
D I + + G +L+ LPF + ++P ++ FR V+ +++ + AL +L P+
Sbjct: 122 SDVRIHLDH--GLSLFTPSQLPFDIAQLPDSFSKFRRLVENLDVFTPLPALQKLPPAPTF 179
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSM-KGGETEALQRLKKFAAEYQAQPPKGN 362
DI + L Q NSM GGE A+ +L + + P
Sbjct: 180 ------DIQCIRPWQLKQI---------EDNSMFTGGERAAVDQLSDY---FSTNLPSHY 221
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K+ + + G S K SPWLA G LS R + SI + + +
Sbjct: 222 KE-TRNELDGWENSTKFSPWLAQGSLSARQI-------KASIDVYER-----DHGANEST 268
Query: 423 NWLMFELLWRDFF 435
W+ FELLWR++F
Sbjct: 269 YWIYFELLWREYF 281
>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
Length = 425
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 140/313 (44%), Gaps = 62/313 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IV F DLRVHD+ +L A ++ V+P++ DP G +RA FL ES+
Sbjct: 5 IVLFNRDLRVHDHPALAAACADAWRVVPLFVIDP----------GVPGGHRAGFLAESLD 54
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +L+ RG DLVVR G P + LA+ + A AVY +VS + E ++ +
Sbjct: 55 DLRGSLRERGGDLVVRQGDPVAETLRLARELPAQAVYVSADVSALAQRRERRLAEECERH 114
Query: 247 GIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+E + F G T+ D L P G+ + + G R+ + A +++
Sbjct: 115 RMEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSGQRRREVLGAPAKVR------- 167
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLK---KFAAEYQAQPPKGN 362
IP L+ G + G +GGET A +R++ K+ E A
Sbjct: 168 -----IPEGLEAG-----PLPVAGHEPHGLFRGGETVARERMRQWLKYCVEDYA------ 211
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
DG HD + G N + K+SP+L GCLSP + S+S E+G
Sbjct: 212 -DG-HDDLAG-NRTSKLSPYLRFGCLSPLEL--------ESLS--------ENGDD---- 248
Query: 423 NWLMFELLWRDFF 435
+ +L WRDFF
Sbjct: 249 --FVRQLCWRDFF 259
>gi|449018268|dbj|BAM81670.1| 6-4 photolyase [Cyanidioschyzon merolae strain 10D]
Length = 519
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 139/321 (43%), Gaps = 40/321 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTA--NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
+++ WFR LR+HDN +L A N + VLPV+C DP + G + R +FL+
Sbjct: 9 SAVHWFRKGLRLHDNPALLDAVQNPTTTYVLPVFCLDPIFLRPETVGVN-----RMNFLL 63
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL + L+ S L V G P L + + + + + ++
Sbjct: 64 ECLQDLDQQLRKLHSRLFVLRGNPLEQLPVFFRKYHTRLLTFEFDTEPYAKQRDTQVRRL 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPT--NYGGFREKVKGVEIRKTIEALDQLKGL 300
+ GIEV+ TLY +D+ +LG+ PT Y F V + + + ALD
Sbjct: 124 CAELGIEVRTRATHTLYDPEDIRRELGDRPTPLTYKSFYAFVTE-RLGQPMSALD--APA 180
Query: 301 PSRG------DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
P+ G D++ +PSL +L Q G +GGETEAL+R++ F E
Sbjct: 181 PASGFQTPDVDLDTYTVPSLSELEAYQ-------GLEVETPFRGGETEALRRMENFLRER 233
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ K + + + ++SP+ GCLSPR +F E ++ + +
Sbjct: 234 ADEVRSFAKPATSPTAWPVASTTQLSPYFKFGCLSPR-LFVERVRSLRPLQ--------Q 284
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
S G W WR+FF
Sbjct: 285 PPVSLIGQIW------WREFF 299
>gi|164428444|ref|XP_965722.2| hypothetical protein NCU00582 [Neurospora crassa OR74A]
gi|157072149|gb|EAA36486.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 722
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 154/356 (43%), Gaps = 55/356 (15%)
Query: 130 FRNDLRVHDNESLNTANNESVS-----VLPVYCF----------------DPRDYGKSS- 167
R +LR+ DN + +N +LPVY F +P KS+
Sbjct: 1 MRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPAPKSAV 60
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVEL-----AKAIGADAV 222
G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L AK AV
Sbjct: 61 GGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAV 120
Query: 223 YAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP---FKLGEMPTNYGGFR 279
+ +E E+ + + GI+ K W Y + D L ++P + +R
Sbjct: 121 WMTSHEGSEEKSEEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLNDLPDVFTTYR 179
Query: 280 EKVKGV--EIRKTIEALDQLKGLPSRGDVE-----------PGDIPSLLDLGLSQSAAMS 326
++++ + + RKT+ ++ LP+ D++ PG L+D +
Sbjct: 180 KQIEPLREKARKTLPVPEK-GALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRPVKNFL 238
Query: 327 QG------GKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKIS 380
+ +++ +GGET A +R+ + K +++G + G +FS K+S
Sbjct: 239 KDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNG----LLGPDFSTKLS 294
Query: 381 PWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+LA GC++ R + L K DG G+ + ELLWRD+ R
Sbjct: 295 AYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMR 350
>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
Length = 479
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 137/316 (43%), Gaps = 36/316 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFR+DLR+ D+ +L+ A ++ +Y D + G +L
Sbjct: 7 RPAIVWFRDDLRMADHPALHEAAASGWPLICLYILD-----DVTPALHPLGAAARWWLRG 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+++DLR+NL+ +G L+ G E +L +LAK A +V+ H + E + +I +
Sbjct: 62 ALADLRRNLEKQGGTLLTLSGSAEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTL 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+++ EV WG+ L D + K G G F + ++ + + +EA PSR
Sbjct: 122 EEQECEVHAQWGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHAVPEPLEA-------PSR 174
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG---GETEALQRLKKFAAEYQAQPPK 360
L D L++ + Q AA K GE E + L+ F A P+
Sbjct: 175 LSFHAIPASVLSDARLNEDSLCPQAPDWAAGFRKTWEPGEAEGQEHLEDFLKNSVAGYPR 234
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
G + + ++SP+LA G +SPR ++ L+K G+
Sbjct: 235 GRDRVAEEG------TSRLSPYLASGAVSPRQVWAALQK---------------HGAHTD 273
Query: 421 GSNWLMFELLWRDFFR 436
G + EL WR+F R
Sbjct: 274 GPRIFLSELGWREFAR 289
>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
Length = 557
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 144/324 (44%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L+ A ++ SV VY DP + SSSG G R FL++S
Sbjct: 2 SSVHWFRKGLRLHDNPALSAALRDATSVRCVYILDPW-FAASSSG----GVNRWRFLLQS 56
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 57 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAK 116
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G P Y F+ + +E+ + T + ++
Sbjct: 117 EAGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTRQQMEAC 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ R E +PSL +LG S+ P+ GGETEAL RL K +
Sbjct: 177 RAEIKRNHDETYGVPSLDELGFH-----SEIKGPSI--WPGGETEALARLDRHLERKAWV 229
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + LK+ + K N
Sbjct: 230 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLKELYKKV----KKN 277
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 278 SPPPLS-------LYGQLLWREFF 294
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 149/321 (46%), Gaps = 46/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A ES V+ ++CFD + D P R ++L+ +
Sbjct: 6 LFWHRKDLRISDNVGLAKARQESSKVVGIFCFDSNILER-----DDIAPARIAYLLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS+L+ G+P ++ +LA + A+AV+ + +V + +E++ A+K++
Sbjct: 61 ELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI+ + +W L++ ++ K GE Y F + + L+ L+GL ++ ++
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLENLEGL-TQTEL 179
Query: 307 EPG------DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEYQA 356
E D+P++ +LG + + GET A +RL F EYQ
Sbjct: 180 EQAKTVKIIDLPTVKELGYRWDYPL---------ILSPGETAAAERLDYFCDAAINEYQE 230
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD-ELKKTATSISAASKWNDGES 415
Q N +I G + ++SP L G + R+++ LK S S + ES
Sbjct: 231 Q-------RNFPAIEGTS---QLSPALKFGVIGIRTVWQATLKAMENSRSDEVR----ES 276
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ EL WR+F++
Sbjct: 277 IVTWQK------ELAWREFYQ 291
>gi|342875294|gb|EGU77092.1| hypothetical protein FOXB_12390 [Fusarium oxysporum Fo5176]
Length = 730
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 152/359 (42%), Gaps = 58/359 (16%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDY----------------GKSS 167
+ R DLR DN L T+++ +LP+Y P +S
Sbjct: 8 VYLLRRDLRAIDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVAEGQKSPYPEARSQ 67
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-----GADA 221
G F + GP RA F ES+ D+++NL+ S ++VR+G + VL L K++ D
Sbjct: 68 VGRFWRCGPVRAKFQAESIWDVKQNLEDIHSGMLVRIGNFDNVLKHLIKSLHDEHQSVDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGGF 278
V+ EVS +EV + + + + I K W Y++DD L E+P + F
Sbjct: 128 VWMTEEVSKEEVDDQNAVASVCSENNINFK-LWQDEKYYIDDRDTGLDDPKELPDVFTTF 186
Query: 279 REKVKGVEIR-KTIEALDQLKGLP------SRGDVEPGDIPS--------LLDL--GLSQ 321
R+ + + R + Q LP + P IP LL+ + Q
Sbjct: 187 RKTQEPLRERPRASLPRPQAGSLPPFPSSWAPPQEPPFQIPDNYNDFEQRLLEPINSMVQ 246
Query: 322 SAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISP 381
+A+ KGGE A RL + ++G + G ++S K+S
Sbjct: 247 DPPAYPDDARSAHPFKGGENPAWDRLYHLIKSGSMTTYQETRNG----LLGTDYSTKLSA 302
Query: 382 WLAMGCLSPRSMFDELKK----TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+LA+G +S RS+ +EL K S S A + GE+ G+ + FELLWRD+ R
Sbjct: 303 YLALGSISARSIHEELVKFENGQEQSYSRAIGFGQGEN----EGTKAVRFELLWRDYMR 357
>gi|121727641|ref|ZP_01680744.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
gi|121630028|gb|EAX62435.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
Length = 462
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 138/314 (43%), Gaps = 34/314 (10%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNTLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y V DE ++ +I
Sbjct: 63 NQTLADLNHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVVGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFPSVLIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G LLD+ +P ++ GGE L + + + K
Sbjct: 179 P---IEQGWQLPLLDI----------VAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKE 225
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 226 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 269
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 TYWIFFELLWREYF 283
>gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
Length = 441
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 140/318 (44%), Gaps = 37/318 (11%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
A + +VWF DLR+ DN +L A + ++ + D + + G + R +
Sbjct: 3 AKHQTGLVWFNLDLRLIDNLTLIRAAEQCQQLVCCFVIDESWFKGNRYGLNGISQPRWRY 62
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ ++++DL +LQ G L++R G+P T + L + DAVY + E + + +
Sbjct: 63 IQQAIADLAASLQQHGQQLIIRKGQPTTEISTLISTLEVDAVYCSDDPGVYERRRWDTL- 121
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ I + TL +L F L E+P Y FR++ + + E + +AL QLK
Sbjct: 122 -VKRFPYITFERVSNHTLLTERELDFPLEELPATYSAFRKRFEPLAETFPSGQALSQLKA 180
Query: 300 LP--SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
LP R + P + + QGG+ AA+ E L + K +A +
Sbjct: 181 LPPMPRRTIASEHTP------FVEPSGYLQGGELAAH-------EHLTQYFKSSAPSHYK 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
+ D DS K+S LA+G +SPR + D L+ N +
Sbjct: 228 ETRNALDNFADST-------KLSAALALGNISPRQVIDALR------------NYEATQG 268
Query: 418 SGAGSNWLMFELLWRDFF 435
+ + W++FEL+WR++F
Sbjct: 269 ANESTYWIVFELMWREYF 286
>gi|424044342|ref|ZP_17781965.1| cryptochrome DASH [Vibrio cholerae HENC-03]
gi|408888871|gb|EKM27332.1| cryptochrome DASH [Vibrio cholerae HENC-03]
Length = 410
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 40/262 (15%)
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
+ FL ES+ L +L A L V P + A +G +Y DE
Sbjct: 18 KQQFLDESLHCLNLSLNALNQRLQVVDLHPYQAVKHAADKLGVTHLYVDAVAGSDEQDVV 77
Query: 237 EKIEAAMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+KI+A + EV+ +L+ ++DLPF+L +P + FR+KV+ + + + +EA
Sbjct: 78 DKIQAEAPHLAVIQSEVR-----SLFSVEDLPFELEALPDTFTKFRKKVEKLALAEPVEA 132
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
+ L LP + +P+L ++++ +P+ GGE L+ +++ A
Sbjct: 133 VTTLPPLP-----DGLALPTL---------SLTRDIQPSL--FTGGERAGLEHCRQYFAS 176
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
A K ++G + G ++S K SPWLA GCLSP++++ LK+ AA+ ND
Sbjct: 177 TLASEYKQTRNG----LDGMDYSTKFSPWLAHGCLSPKTIYAMLKR----YEAANGAND- 227
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 228 -------STYWIYFELLWREYF 242
>gi|429851356|gb|ELA26551.1| cryptochrome dash [Colletotrichum gloeosporioides Nara gc5]
Length = 690
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 153/361 (42%), Gaps = 60/361 (16%)
Query: 127 IVWFRNDLRVHDNESLN----TANNESVSVLPVYCFDP---------RDYGKSS------ 167
I R+DLR+ DN L+ ++++ VLPVY F RD KS
Sbjct: 8 IYLLRHDLRIADNPILHHLATSSDHGFTHVLPVYIFPAHQIEISGFLRDGSKSKYPEARS 67
Query: 168 --SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----AD 220
F + GP+R F+ +SV +L+++L+ GSDL +R G V+ EL +
Sbjct: 68 EIGKFWRCGPHRTKFIAQSVWNLKESLEGVGSDLCLRAGMFGDVVDELLRGFSDSKYKVG 127
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGG 277
AV+ E + +E K E + AA G+ K W Y +DD L ++ +
Sbjct: 128 AVWMTAEEAVEEKKDEMAVAAACSKHGVNFKT-WLDEKYFIDDRDLGLKNPEDLDNVFTA 186
Query: 278 FREKVKGVEIRKTIEALDQLKG----------LPSRGDVEPGDIPSLLDLGLSQSAAMSQ 327
FR+ + + K L Q K LP++ P ++PS D +SA +
Sbjct: 187 FRKTQEPLR-EKPKPTLPQPKKSAIKPYPKDLLPTQS--SPYEVPSD-DYSKLESALLKP 242
Query: 328 GGKPAANSMK------------GGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANF 375
P + K GGE+EA RL K ++G + G +F
Sbjct: 243 LTSPFTDDPKIPDKAKSVHPFHGGESEARSRLHHLVKSGAMTEYKNTRNG----LLGVDF 298
Query: 376 SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S K+S +L++GCL+ R + + L + + K G G+ + FELLWRD+
Sbjct: 299 STKLSAFLSLGCLTSRQIHEALVQFEDGTNEDFKETSGYGKGENDGTKAVRFELLWRDYM 358
Query: 436 R 436
R
Sbjct: 359 R 359
>gi|419830295|ref|ZP_14353780.1| cryptochrome, DASH family protein [Vibrio cholerae HC-1A2]
gi|419833974|ref|ZP_14357429.1| cryptochrome, DASH family protein [Vibrio cholerae HC-61A2]
gi|422917675|ref|ZP_16951993.1| cryptochrome DASH [Vibrio cholerae HC-02A1]
gi|423822581|ref|ZP_17716591.1| cryptochrome, DASH family protein [Vibrio cholerae HC-55C2]
gi|423855972|ref|ZP_17720396.1| cryptochrome, DASH family protein [Vibrio cholerae HC-59A1]
gi|423882846|ref|ZP_17723983.1| cryptochrome, DASH family protein [Vibrio cholerae HC-60A1]
gi|423998105|ref|ZP_17741357.1| cryptochrome DASH [Vibrio cholerae HC-02C1]
gi|424016998|ref|ZP_17756828.1| cryptochrome DASH [Vibrio cholerae HC-55B2]
gi|424019923|ref|ZP_17759709.1| cryptochrome DASH [Vibrio cholerae HC-59B1]
gi|424625288|ref|ZP_18063749.1| cryptochrome DASH [Vibrio cholerae HC-50A1]
gi|424629771|ref|ZP_18068059.1| cryptochrome DASH [Vibrio cholerae HC-51A1]
gi|424633819|ref|ZP_18071919.1| cryptochrome DASH [Vibrio cholerae HC-52A1]
gi|424636898|ref|ZP_18074906.1| cryptochrome DASH [Vibrio cholerae HC-55A1]
gi|424640811|ref|ZP_18078694.1| cryptochrome DASH [Vibrio cholerae HC-56A1]
gi|424648878|ref|ZP_18086541.1| cryptochrome DASH [Vibrio cholerae HC-57A1]
gi|443527798|ref|ZP_21093847.1| cryptochrome DASH [Vibrio cholerae HC-78A1]
gi|341636557|gb|EGS61251.1| cryptochrome DASH [Vibrio cholerae HC-02A1]
gi|408012865|gb|EKG50630.1| cryptochrome DASH [Vibrio cholerae HC-50A1]
gi|408018351|gb|EKG55804.1| cryptochrome DASH [Vibrio cholerae HC-52A1]
gi|408023529|gb|EKG60690.1| cryptochrome DASH [Vibrio cholerae HC-56A1]
gi|408024255|gb|EKG61376.1| cryptochrome DASH [Vibrio cholerae HC-55A1]
gi|408033158|gb|EKG69716.1| cryptochrome DASH [Vibrio cholerae HC-57A1]
gi|408055493|gb|EKG90418.1| cryptochrome DASH [Vibrio cholerae HC-51A1]
gi|408620068|gb|EKK93080.1| cryptochrome, DASH family protein [Vibrio cholerae HC-1A2]
gi|408634557|gb|EKL06792.1| cryptochrome, DASH family protein [Vibrio cholerae HC-55C2]
gi|408640875|gb|EKL12657.1| cryptochrome, DASH family protein [Vibrio cholerae HC-59A1]
gi|408640970|gb|EKL12751.1| cryptochrome, DASH family protein [Vibrio cholerae HC-60A1]
gi|408648796|gb|EKL20113.1| cryptochrome, DASH family protein [Vibrio cholerae HC-61A2]
gi|408852460|gb|EKL92282.1| cryptochrome DASH [Vibrio cholerae HC-02C1]
gi|408860086|gb|EKL99737.1| cryptochrome DASH [Vibrio cholerae HC-55B2]
gi|408867017|gb|EKM06379.1| cryptochrome DASH [Vibrio cholerae HC-59B1]
gi|443453670|gb|ELT17488.1| cryptochrome DASH [Vibrio cholerae HC-78A1]
Length = 461
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 136/315 (43%), Gaps = 37/315 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + G P
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETISLSAPM-------GYP 173
Query: 302 S-RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
+E G L+D+ G +P + GGE L + + + K
Sbjct: 174 HVLPPIEQGWQLPLMDI----------GTEPNHCAFVGGEQAGLTHCQNYFSSMLPSRYK 223
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 224 ETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND-------- 267
Query: 421 GSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 STYWIFFELLWREYF 282
>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
Length = 591
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN SL A + V VY DP SS G + R FL++S
Sbjct: 21 SSVHWFRKGLRLHDNPSLLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 75
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 76 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 135
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 136 EAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTSQQMESC 195
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 196 RAEIQDNHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 248
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 249 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 296
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 297 STPPLS-------LFGQLLWREFF 313
>gi|444377559|ref|ZP_21176769.1| Cryptochrome [Enterovibrio sp. AK16]
gi|443678340|gb|ELT85011.1| Cryptochrome [Enterovibrio sp. AK16]
Length = 427
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 133/313 (42%), Gaps = 38/313 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR+DLR+ DN +L + L VY DP + + G +R FL +S+
Sbjct: 4 LLWFRHDLRLADNPALVALSRRCDQALMVYVIDPEWFRPAHFQSRHLGRFREEFLYQSLR 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L + L+ R LVV+VG P V+ +L K G D + H V +++ +
Sbjct: 64 ALERELKKRKQRLVVKVGNPLQVIPDLCKKHGIDLLAV---TDHPGVYERQQVAYLSRTL 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G EV +L+ L F P + FR+ V+ I LP
Sbjct: 121 GCEVSVSESFSLFLRSQLTFDKTTFPQTFSQFRKHVEKQNI------------LPCIPIS 168
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSM---KGGETEALQRLKKFAAEYQAQPPKGNK 363
P +P +D GG+ + GGE + +L +F ++ Q K K
Sbjct: 169 APESLPKHID-----ERRDIWGGQEFVYDLTPYHGGEDSGMVQLNQFF--WKTQGLKNYK 221
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ + + G FS ++S WLA G +SPR + EL ++ G S S+ +
Sbjct: 222 E-TRNGLDGWQFSSRLSAWLANGSISPRIVAAELDNY--------EYRHGRSDSTES--- 269
Query: 424 WLMFELLWRDFFR 436
+ ELLWR++F+
Sbjct: 270 -MYAELLWREYFQ 281
>gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
hollisae CIP 101886]
gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
hollisae CIP 101886]
Length = 427
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 134/313 (42%), Gaps = 38/313 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR+DLR+ DN +L T + L V+ +P + + G +R FL +S+
Sbjct: 4 LFWFRHDLRLADNPALITLSRRCSKALMVFVINPEWFRPAHYQSRHLGRFREEFLYQSLR 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L + L+ LVV+VG P V+ +L K G D V H V +++ +
Sbjct: 64 SLERELKKHKQRLVVKVGNPLLVIPDLCKKHGIDMVAM---TDHPGVYERQQVAYLSRTL 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
EV TL+ L F P + FR+ V+ I LP
Sbjct: 121 RSEVSVSESFTLFLRSQLAFDKTTYPATFSQFRKHVEKQNI------------LPCIPIS 168
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSM---KGGETEALQRLKKFAAEYQAQPPKGNK 363
P +P+++D GG+ + GGE + +L +F ++ Q K K
Sbjct: 169 APDSLPTVID-----ERRDIWGGQEFVYDLTPYHGGEDAGMVQLNQFF--WKTQGLKNYK 221
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+D + G FS ++S WLA G +SPR++ EL ++ G S S+ +
Sbjct: 222 QTRND-LDGWQFSSRLSAWLANGSISPRTVAAELDNY--------EYRHGRSDSTQS--- 269
Query: 424 WLMFELLWRDFFR 436
+ ELLWR++F+
Sbjct: 270 -MYAELLWREYFQ 281
>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
Length = 606
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN SL A + V VY DP SS G + R FL++S
Sbjct: 36 SSVHWFRKGLRLHDNPSLLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 90
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 91 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 150
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 151 EAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTSQQMESC 210
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 211 RAEIQDNHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 263
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 264 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 311
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 312 STPPLS-------LFGQLLWREFF 328
>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
Length = 566
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 150/367 (40%), Gaps = 75/367 (20%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +I+WFR LRVHDN +L A + +V PV+ DP ++ G R FL+E
Sbjct: 4 KRTILWFRKGLRVHDNPALVKACEGASAVQPVFVLDPWFIKP-----ERVGANRLRFLLE 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DL +L+ARGS L+V G P V+ +A D + + K + + A
Sbjct: 59 SLTDLDASLRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTEPYAQKRDASVNEAA 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL--GEMPTNYGGFREKVKGVEIRKTI---------- 291
+ G+EV TL+ LD L K GE PT Y F + GV +
Sbjct: 119 RALGVEVHAPVSHTLWDLDRLLAKCPRGEPPTAYASFLKIAHGVGPVPPVAPDVPSITPL 178
Query: 292 ---EALDQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQR 346
+AL K L R V IPSL LG A G PA +GGETE L R
Sbjct: 179 SDGDALSDGKDLVDALRDVVTGSGIPSLERLGYEPIKAGE--GFPA----RGGETEGLAR 232
Query: 347 LKK------FAAEY---------------------QAQPP-----------KGNKDGNHD 368
L+K + AE+ + PP K K
Sbjct: 233 LRKMLARTTYIAEFKKPQTNPTELWTPVLGKEGKVKGAPPANPFEAAKKSSKEPKSTQLA 292
Query: 369 SIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 428
+ A + +SP+L GC+SPR+ + EL + + K + G +
Sbjct: 293 EAFMAPATTALSPYLKFGCVSPRTFWHEL-RAVLDVELGGKHSKPPESLEG--------Q 343
Query: 429 LLWRDFF 435
LLWR+F+
Sbjct: 344 LLWREFY 350
>gi|416411248|ref|ZP_11688726.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260330|gb|EHJ09764.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 222
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 25/171 (14%)
Query: 268 LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMS 326
+ ++P + FR+KV K + + + +L+ LP D+E G++PSL +L L + S
Sbjct: 1 MSKLPEVFTSFRKKVEKNSTVNPILISPRKLRSLP---DIEVGNVPSLEELELEKPKYDS 57
Query: 327 QGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKGNKDGNHDSIYGANFSCKISPWLAM 385
+G KGGETE +QRL + E + K ++G + GA++S K SPWLA
Sbjct: 58 RG----VLEFKGGETEGIQRLNNYFWERNCLKEYKETRNG----MLGADYSSKFSPWLAN 109
Query: 386 GCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
GCLSPR +++E++K E + WL+FELLWRD+FR
Sbjct: 110 GCLSPRYIYEEVQKYE------------EKRIKNNSTYWLIFELLWRDYFR 148
>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
Length = 537
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 144/325 (44%), Gaps = 39/325 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
S++WFR LRVHDN +L A+ S + PV+ DP D S G + G R F
Sbjct: 6 GSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES+ DL +L+ GS L+V G+P VLV + + + + K++
Sbjct: 66 LLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVK 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
G+EV TL++ + K G+ P +Y F KV G E +
Sbjct: 126 DYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFL-KVAGEPSCAKSELVMSYSS 184
Query: 300 LPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK------F 350
LP GD+ ++PSL +LG +GGE+EAL+RL K +
Sbjct: 185 LPPIGDIGNLGISEVPSLEELGYKDDEQADW------TPFRGGESEALKRLTKSISDKAW 238
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A ++ PKG+ S + + +SP+L GCLS R + L+ +
Sbjct: 239 VANFEK--PKGDP-----SAFLKPATTVMSPYLKFGCLSSRYFYQCLQNI---------Y 282
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
D + +S S L+ +LLWR+FF
Sbjct: 283 KDVKKHTSPPVS--LLGQLLWREFF 305
>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
Length = 580
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 11 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 66 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 125
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + ++ +
Sbjct: 126 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 185
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R D++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 186 RADIQESHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 238
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 239 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 286
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 287 STPPLS-------LFGQLLWREFF 303
>gi|414866985|tpg|DAA45542.1| TPA: hypothetical protein ZEAMMB73_014165 [Zea mays]
Length = 463
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 60/75 (80%)
Query: 253 FWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIP 312
F GSTLYH++DLPF+L ++P+NYGGF+E +KG++IRK +EA +++K +P + +EPGDIP
Sbjct: 376 FTGSTLYHVEDLPFRLDDIPSNYGGFKEAMKGLDIRKVLEAPEEVKCVPMKNVLEPGDIP 435
Query: 313 SLLDLGLSQSAAMSQ 327
+L +L L+ M+Q
Sbjct: 436 TLAELSLTTPPGMAQ 450
>gi|440640654|gb|ELR10573.1| hypothetical protein GMDG_04846 [Geomyces destructans 20631-21]
Length = 686
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 160/373 (42%), Gaps = 77/373 (20%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS----VLPVYCF------------------DPRDYG 164
I R DLR+ DN +TA ++ +LPVY F P
Sbjct: 8 IYLLRRDLRLEDNPVFHTAATDAAKTYTHLLPVYAFPAQQIEVSGFIPKVSEEKSPYPEA 67
Query: 165 KSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVEL-------AKA 216
+SS S F + GP+RA F+ ESV +L++ L GS L VRVG VL +L K
Sbjct: 68 RSSISKFWRCGPHRAKFIAESVWELKETLGNVGSGLEVRVGMLSDVLKDLLAGFKFNGKG 127
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL--DDLPFK-LGEMPT 273
+ AV+ E +E E+ + G++ K W Y + DD+P K + E+P
Sbjct: 128 VNIAAVWMTAEEGVEEKLDEKDCKTICDAAGVDFK-LWKDEKYFVDDDDVPLKDISELPD 186
Query: 274 NYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP--------------------GDIPS 313
+ +R+ V+ + + A L P++G + P D+ S
Sbjct: 187 VFTTYRKLVEPL-----LNAPRALLPTPAKGTLPPLPPMSIIPPQSPPFVIPNSYEDLES 241
Query: 314 LLDLGLSQSA----AMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDS 369
L +SQS + P + ++ GG A RL ++ KD +D
Sbjct: 242 SLLSPISQSPLPTFPLRPSSMPPSPTLHGGSQAAKSRLLHL---LESGAITTYKDTRND- 297
Query: 370 IYGANFSCKISPWLAMGCLSPRSMFDELKKTAT------SISAASKWNDGESGSSGAGSN 423
+ GA++S ++S +L+ GC++ R + D L + S ++ + GE+G + A
Sbjct: 298 LMGADYSVRLSSYLSQGCITARQIHDSLVSFESGDSNLPSCASTPGFGKGETGGTSA--- 354
Query: 424 WLMFELLWRDFFR 436
+ +ELLWRD+ R
Sbjct: 355 -IRYELLWRDYMR 366
>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
Length = 581
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 11 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 66 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 125
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + ++ +
Sbjct: 126 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 185
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R D++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 186 RADIQESHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 238
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 239 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 286
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 287 STPPLS-------LFGQLLWREFF 303
>gi|403254649|ref|XP_003920073.1| PREDICTED: cryptochrome-2 [Saimiri boliviensis boliviensis]
Length = 593
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + +D
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMDSC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|91224260|ref|ZP_01259523.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
gi|91191171|gb|EAS77437.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
Length = 422
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 36/263 (13%)
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G + FL S+S+L ++L G L P+ + G +YA DE
Sbjct: 27 GRAKLQFLDSSLSELNQSLNHLGQRLWAVELTPDQAIKYAVNRFGVTHIYADAFPGSDEQ 86
Query: 234 KSEEK-IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE 292
++ ++ +E A +++K TL + LPF L +PT + FR++V+G++I + E
Sbjct: 87 QALDRAVEGASH---VKIKQQAIRTLLREEQLPFDLSNLPTTFTQFRKQVEGLDISRPHE 143
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
++ L +P L + L A K A GGE+ L+ +++ A
Sbjct: 144 SIRSLPPIP-------------LGVNLPSVTAYYFDAKAA---FHGGESRGLEHCRQYFA 187
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
A K ++G + G ++S K SPWLA GC+SP++++ LK+ +
Sbjct: 188 STLASEYKQTRNG----LDGMDYSTKFSPWLAHGCVSPKTIYAMLKRY-----------E 232
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
E+G++ + + W+ FELLWR++F
Sbjct: 233 AENGANDS-TYWIYFELLWREYF 254
>gi|348558770|ref|XP_003465189.1| PREDICTED: cryptochrome-2 [Cavia porcellus]
Length = 593
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 141/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 CSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGAVSSQQMESC 197
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|374619112|ref|ZP_09691646.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
gi|374302339|gb|EHQ56523.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
Length = 434
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 140/311 (45%), Gaps = 45/311 (14%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFR DLR++DN +L ++ + S+L +Y P+ K G R FL ES+ +L
Sbjct: 6 WFRTDLRLNDNPAL-ASHAAAESLLCLYLM-PKP--KPWCNLTGIGDQRDRFLRESLIEL 61
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
+++LQ G DL+V G PE V+ L + G + +E +S + + I
Sbjct: 62 KRDLQDLGQDLLVLEGSPELVIPHLVERYGITEISVSDHPGWEEKQSLSYLAGKLP---I 118
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
++ G++L+ DLP +L + P + FR K + + +R A ++L PS +
Sbjct: 119 PIQIHRGNSLFTETDLPMELEDFPKVFSPFRRKAEKLNVRGPRAAPERLPPPPS---AQF 175
Query: 309 GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHD 368
++P S G P + GG L+RLK+F + ++ +
Sbjct: 176 DEVPP--------SMNKPHPGLP----IPGGRRAGLRRLKQFIWDDES---ITEYKQTRN 220
Query: 369 SIYGANFSCKISPWLAMGCLSPR----SMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
+ G + S SPWLA G LS R +FD K+ ++ S + W
Sbjct: 221 CLDGFDGSSTFSPWLANGTLSVREVAHCIFDFEKQRVSNES----------------TYW 264
Query: 425 LMFELLWRDFF 435
L FELLWR+FF
Sbjct: 265 LFFELLWREFF 275
>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
Length = 517
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 27/299 (9%)
Query: 118 NGAAIRRASIVWFRND-LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
G +I ++ WFR D LR+HDN + A + V+ DP ++G + +
Sbjct: 14 QGQSIPDTTVHWFRLDALRLHDNPAFVDAVKTDGNFKAVFIIDPWFNANYNNGGPQVNVW 73
Query: 177 RASFLIESVSDLRKNLQAR--GSDLVVRVGKPETVLVELAKAIGADAV-YAHREVSHDEV 233
R FL+E++ DL LQ + + L V G+P +L EL K + + +VS + +
Sbjct: 74 R--FLLEALHDLDSRLQKKPYCARLNVLYGQPTMILPELYKKWNVKKITFQASQVSSESM 131
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYH-LDDLPFKLGEMPTNYGGFREKVKGV-----EI 287
K + I+ + + ++ ++ TLY + + G +P +Y FR + + I
Sbjct: 132 KHDGIIKILSEQQNVQAVSYFSHTLYDPANVIALNNGRVPLSYKEFRRLMPLMGKPASPI 191
Query: 288 RKTIEALDQLKGLPSRGDVEP-GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQR 346
+ +K PS EP G IP L DLGLS A+ NS GGETEAL R
Sbjct: 192 PEPHPMSLCMKAPPSELVPEPEGKIPKLQDLGLSDEFAL------YTNSWVGGETEALSR 245
Query: 347 LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
L F + A P ++ ++ +SP++ GCLS R +F +L + A++ S
Sbjct: 246 LSSFCSRRAAIP--------NEPVHWLMSKDTLSPYIKFGCLSVRQLFSQLLQFASTSS 296
>gi|351696947|gb|EHA99865.1| Cryptochrome-2 [Heterocephalus glaber]
Length = 593
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 141/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 CSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGAVSSQQMKSC 197
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|402075234|gb|EJT70705.1| hypothetical protein GGTG_11728 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 849
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 159/365 (43%), Gaps = 61/365 (16%)
Query: 123 RRASIVWFRNDLRVHDNESLNT----ANNESVSVLPVYCFD------------------P 160
R+ I R DLRV DN L+ ++ +LPV+ F P
Sbjct: 4 RKILIYLLRKDLRVTDNPVLHHLASHKDHGFTHMLPVFVFPAHQMEISGFVKDGSKSPYP 63
Query: 161 RDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGK----PETVLVELAKA 216
G+ S + + GPYRA F+ ESV +L+ + ++ S L +R G E +L L K
Sbjct: 64 EARGRVSR-YRRCGPYRAKFIAESVWNLKSSFESLDSGLELRAGMLKDVAEGLLDGLEKR 122
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD--DLPFKLG-EMPT 273
AV+ EV +E E+ + A + G E + W Y +D DL FK E+P
Sbjct: 123 GDTGAVWMTAEVCPEETADEDAVAAVCQQHGFEFQR-WVDEKYFVDDRDLNFKEAHELPQ 181
Query: 274 NYGGFREKVKGV--EIRKTI--EALDQLKGLPSRGDV----EPGDIPS---------LLD 316
+ +R+ V+ + + RKT+ A L P G + P IP LL
Sbjct: 182 IFTDYRKSVEPLRQKPRKTLPRPAPGSLPAFPEAGSIPEQAAPFVIPETYEKLEPALLLP 241
Query: 317 L-GLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANF 375
L G ++ GG +A+ GGE A +RL + K ++G + GA+F
Sbjct: 242 LKGPFETMLTLPGGSISAHPFHGGEDAAQERLVYVVSSGIISKYKQRRNG----LVGADF 297
Query: 376 SCKISPWLAMGCLSPRSMFDEL----KKTATSISAASKWNDGESGSSGAGSNWLMFELLW 431
S K+S +LA GC++ R + + L T ++ A + GE+ A + EL+W
Sbjct: 298 STKLSAYLAQGCITARQVHEALVGLEDGTDPTLEGAEGFGKGETDDIKA----VREELMW 353
Query: 432 RDFFR 436
RD+ R
Sbjct: 354 RDYMR 358
>gi|343496946|ref|ZP_08735031.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342820399|gb|EGU55222.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 444
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 138/315 (43%), Gaps = 40/315 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF NDLR+ DN +L A ++ +YC DPR G R SFL++S+
Sbjct: 4 AVYWFTNDLRIEDNPALIRALQTENTLHCLYCLDPRSLKPGRYSTKPIGEKRLSFLLQSL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE---VKSEEKIEAA 242
++L + L+A G L V + P+ + L + Y+ R V H + +
Sbjct: 64 AELDETLRAFGQHLHVYLENPDDLFCRLYQQ------YSVRRVHHSVNAGLYEKAFFSRV 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ + + TL++ + LPF L ++P + FR+ V+ E R+ + + LP
Sbjct: 118 SQRSDVVLNASHSHTLFNPESLPFDLCDLPETFSKFRKLVEK-EKRRLVAPM-----LPP 171
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQ-GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
EP L + S +Q + + GG AL+ L + + A K
Sbjct: 172 TSWPEP--------LCANSSEWKTQLETNTGSEAFSGGCKSALRHLDSYFSTDNASRYKE 223
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++ D + S K SPWLA G LSP + LK+ ++ A ND
Sbjct: 224 TRNALDD----WSSSTKFSPWLANGSLSPNLVLWLLKQYESTSGA----ND--------S 267
Query: 422 SNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 268 TYWIEFELLWREYFQ 282
>gi|361125657|gb|EHK97690.1| putative cryptochrome DASH, mitochondrial [Glarea lozoyensis 74030]
Length = 652
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 154/362 (42%), Gaps = 63/362 (17%)
Query: 127 IVWFRNDLRVHDNESLNT-ANNES---VSVLPVYCFDPRDY--------GKSS------- 167
I R DLRV DN L+ A ++S +LP+Y F + G+++
Sbjct: 12 IYLLRKDLRVSDNPVLHALAKDQSHGFTHLLPLYVFQAQQIEVKGFIPEGEAAKSPFPEA 71
Query: 168 ----SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVL------VELAKAI 217
+GF +TGP+R F+ ESV D++KNLQ GSDL +R G + VL + I
Sbjct: 72 RSQVAGFWRTGPHRVKFVSESVWDMKKNLQQLGSDLCIRAGMADGVLRHVIDEINQKSGI 131
Query: 218 GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG 277
AV+ E +E + E I + + K F Y +DD P + P +
Sbjct: 132 KVGAVWMTAEEGVEEKREERAIRNLCDETDTDFKLFVDEK-YFIDDDP---QDAPNVFTE 187
Query: 278 FREKVKGVEIRKTIEAL------DQLKGLPSRGDVEPGDIP-SLLDLGLSQSAAMSQ--- 327
+R KV+ +R+ A+ D L P V + P ++ D AA+ +
Sbjct: 188 YRNKVE--PLREAPRAVLATPEKDSLPQYPEDSQVPAQESPFTIPDNAEGLLAALMKPLT 245
Query: 328 -----------GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFS 376
G +A+ KGGET A RL+ A A K +++G + G +FS
Sbjct: 246 DPLIKDPPKDPGDVQSAHPFKGGETAAQDRLEHIIASGSASSYKDSRNG----LLGLDFS 301
Query: 377 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWN--DGESGSSGAGSNWLMFELLWRDF 434
K+S +L GC++ R + L KW G G+ + FELLWRD+
Sbjct: 302 TKLSSYLVYGCITSRQIHTALLAFEDGTDDG-KWKGVTGHGKGENPGTKSIRFELLWRDY 360
Query: 435 FR 436
R
Sbjct: 361 MR 362
>gi|73983386|ref|XP_540761.2| PREDICTED: cryptochrome-2 [Canis lupus familiaris]
Length = 593
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + ++ +
Sbjct: 138 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R D++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RADIQDNHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|344280774|ref|XP_003412157.1| PREDICTED: cryptochrome-2 [Loxodonta africana]
Length = 593
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 140/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|392574250|gb|EIW67387.1| hypothetical protein TREMEDRAFT_33591 [Tremella mesenterica DSM
1558]
Length = 661
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 134/323 (41%), Gaps = 61/323 (18%)
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET---VLVE-LAKAIGADAVY 223
+ F +T PYR FL+ES+ LR + G DL++ G+P+ VL+E L + + V+
Sbjct: 99 ANFHRTSPYRLRFLLESIFYLRDTYRRSGGDLLIGYGRPDRLLPVLIEKLKETSEIEGVW 158
Query: 224 AHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283
A EV+ +E + +E A++ G+++ TL + DLPF + P Y FR+ +
Sbjct: 159 AQDEVTVEEKDMLDNLEVALQKIGVKMNKVDSKTLVAIKDLPFDRRQTPDVYTAFRKNCE 218
Query: 284 ----------------------GVEIRKTIEALD-----QLKGLPSRGDVEPGD------ 310
++I + L + LP V D
Sbjct: 219 GLGLSLGGMLKQPLRTSHLSQGNIKIDIDGQRLKPAPQMEFSTLPEGCGVLGKDTSVVEI 278
Query: 311 ----IPSLLDL----GLSQSA----AMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+ LLD G SQ+A A+ +A +GGE AL+RL + +
Sbjct: 279 YTKLVKPLLDTPPVGGWSQAAKDNNALPVFHPSSAVPFEGGEKAALERLDDYVGHEDGKG 338
Query: 359 PKG-----NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
G + + G FS K S WL++GCLS R + + + D
Sbjct: 339 WTGGGKAKQYKATRNGMIGEGFSTKFSCWLSLGCLSAREI-------GWRVGGLLEKVDR 391
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
+ + W++FELLWRDFF+
Sbjct: 392 KDKDTYNNVYWIIFELLWRDFFQ 414
>gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis]
Length = 661
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 156/354 (44%), Gaps = 69/354 (19%)
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTA---------NNESVSVLPVYCFDPRDYGKSS 167
++G + A+++WFRNDLR+ D+E L++A +S +LP YC D R+ +
Sbjct: 28 DSGPTRKPAALIWFRNDLRLADHEPLHSAAADLQHCLSQGQSPLLLPFYCLDERELAPRA 87
Query: 168 S------GFD--KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVL---VELAKA 216
G D + GP+R L+E+ + LR L+ GSDL+ G+PE ++ V LA A
Sbjct: 88 GELPQEGGLDIPQLGPHRLRLLLEACASLRAALRRLGSDLLAAQGRPEALVGRLVALAAA 147
Query: 217 IGADAVYAHREVSHDEVKSE------EKIEAAMKDEGI--EVKYFWGSTLYHLDDLPFKL 268
G+ ++ H +S D ++ EAA G+ V +WG TLYH DDLPF L
Sbjct: 148 AGSSSMALHHHMSPDAASADLEDAVAAAFEAAAARHGLPCSVHRYWGCTLYHPDDLPFHL 207
Query: 269 GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVE----------PGDIPSLLD-- 316
+ G R E Q +G SR + P D+ S+
Sbjct: 208 WACGSASSGGRPGAA-AVAGPAAEQQQQQRGQCSRVNPAAAEAGLLGPLPTDLASVYSAA 266
Query: 317 -------------LGLSQSAAMSQG--GKPAANS---MKGGETEALQRLKKFAAEYQA-- 356
LG + AA++ G+ A S GE +A+QRL+ + ++
Sbjct: 267 GGAATAALACWEALGAVRCAALAPACSGRHDARSALPFGMGEEQAVQRLRYYLGLEESDG 326
Query: 357 --------QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT 402
+ P +G + S K+S +L++GCLSPR+ E+ + A
Sbjct: 327 HSVRSVDQEAPIATYRETRMQPFGVDSSAKLSAFLSLGCLSPRTAHAEVARLAV 380
>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
Length = 490
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 138/312 (44%), Gaps = 26/312 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+VWFR LR+HDN +L A ++ + P++ DP G + R FL+ES+
Sbjct: 4 SLVWFRKGLRLHDNPALLDAARDAARLYPLFIVDPWFVNPERVGVN-----RMRFLLESL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
++ NL+ GS L+V G+P+ VL + + R+ + +E I + +
Sbjct: 59 GEIDGNLRRLGSRLIVLQGRPQEVLERVLSRWQIGRLCFERDTEPYARRRDEAIRSMAER 118
Query: 246 EGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPSR 303
G+ V TLY D+L G++PT YG F R K E + + L P
Sbjct: 119 VGVRVISPTAHTLYDPDELIELGRGKVPTTYGAFGRLAAKLGEPDAPVASPSHLPP-PGE 177
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
D + G IP+L +LG S+G P GGE E L+RL + ++ Q
Sbjct: 178 LDADYG-IPTLAELGYPDPECPSRGIIP-----PGGEGEGLRRLHVYLSDRQRSAGFAKP 231
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
D + + + + + L GCLS R+ + E++K E G
Sbjct: 232 DTD-PTAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYR-----------EVGEHTEPPM 279
Query: 424 WLMFELLWRDFF 435
L+ ++LWR+FF
Sbjct: 280 SLIGQILWREFF 291
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 46/315 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ W R DLR DN SL+ A E+ SV+P + FDP + + P R +F++ES+
Sbjct: 2 TVHWHRRDLRAADNRSLSAAA-ETGSVIPAFVFDP-------AVLEYASPPRVAFMLESL 53
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
S+LR + RGSDLVV G P L +A+ A++V +R+ S K +E + A+ D
Sbjct: 54 SELRAWYRERGSDLVVATGDPRDELPRIAREHDAESVSWNRDYSGLASKRDEAVREALTD 113
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLKGL 300
G+E + L+ + + GE Y F +K + E + E L + G
Sbjct: 114 AGLEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVPAPNGEQLASVSGD 173
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
P +PS LG + P AN G A +RL+ F A+ P
Sbjct: 174 P---------LPSQEALGFDE---------PEANIPDTGMEAARRRLETFCAD----PIY 211
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
D D A+ + +SP L G + R++++ +++ + + + E S
Sbjct: 212 RYADQRDDP--AADATSGLSPHLKWGTIGIRTVYEAVERAKSEAPDDATADSCEEFES-- 267
Query: 421 GSNWLMFELLWRDFF 435
+L WR F+
Sbjct: 268 -------QLAWRAFY 275
>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
Length = 542
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 148/327 (45%), Gaps = 51/327 (15%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+SI WFR LR+HDN +L A N + S+ P++ D +S + GP R +FL+ES
Sbjct: 8 SSIHWFRKGLRLHDNRALLEACNGTASLYPLFVLD----SDPASPESRAGPLRTAFLLES 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL + L+A+GS L V GKPE VL +L + + + + ++ + K
Sbjct: 64 LQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAK 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPF----KLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ G++V STL +L + K G YG F K+ A D L
Sbjct: 124 EAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFL-KLHDNAGPVPDCAPDISGDL 182
Query: 301 PSRGDVEPGD-------IPSLLDLGLSQSAAMSQGGKPAANSMK--GGETEALQRLKKFA 351
P+ G P D IPSL DLG+ +P A ++K GGE EAL RL++
Sbjct: 183 PAPG-ASPDDAEYDRFSIPSLSDLGV----------EPLAKALKFRGGEREALARLERVM 231
Query: 352 AEY----QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
A + + PK + + S + +S +++ GCLS R + L K T
Sbjct: 232 AREDWISKFEKPKTSPNSIEPS------TTVLSMYISHGCLSTRRFWHALCKVYTK---- 281
Query: 408 SKWNDGESGSSGAGSNWLMFELLWRDF 434
+ GS S L +LLW++F
Sbjct: 282 ------KGGSKPPVS--LKGQLLWKEF 300
>gi|431915736|gb|ELK16069.1| Cryptochrome-2 [Pteropus alecto]
Length = 593
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 44/320 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S V+ ++CFD ++ P R ++LI +
Sbjct: 6 LFWHRKDLRISDNIGLAKARQKSSKVVGIFCFDSNILEQND-----IAPVRIAYLIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS+L+ G+P ++ +LA + A+AV+ + +V + +E++ A+K++
Sbjct: 61 ELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR--- 303
GI+ + +W L++ ++ K GE Y F + + L+ L+GL
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLESLEGLTQTELQ 180
Query: 304 --GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEYQAQ 357
+V D+P++ +LG + + GET A +RL F EYQ Q
Sbjct: 181 QAKNVNIIDLPTVQELGYRWDYPL---------ILSPGETAAAERLDYFCDAAINEYQEQ 231
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD-ELKKTATSISAASKWNDGESG 416
N +I G + ++SP L G + R+++ LK S S + ES
Sbjct: 232 -------RNFPAIEGTS---QLSPALKFGVIGIRTVWQATLKAMENSRSDEVR----ESI 277
Query: 417 SSGAGSNWLMFELLWRDFFR 436
+ EL WR+F++
Sbjct: 278 VTWQK------ELAWREFYQ 291
>gi|381394100|ref|ZP_09919818.1| cryptochrome DASH [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379330372|dbj|GAB54951.1| cryptochrome DASH [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 435
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 135/313 (43%), Gaps = 31/313 (9%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FR+DLR+ DNE+L+ NE V+ Y FDP + +S G G +R +FL + + L
Sbjct: 13 FRHDLRIDDNEALHKLVNECDYVVAAYIFDPENLRRSKYGHCHLGKHRHTFLDQGLLALE 72
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
L DL + G P + EL D + H +E+K A ++ +
Sbjct: 73 AALNDANIDLHMFSGDPVRNISELINNNNIDCI----SFEHHYGFNEQKQIAQLRKLHPK 128
Query: 250 VKYFWGSTLYHL--DDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDV 306
G + Y L D LPF + +MP + FR KV K + +RK ++ L +
Sbjct: 129 THLIDGQSHYLLMHDALPFDMADMPDVFSPFRRKVEKNLTVRKHLQEY-----LKEEFNQ 183
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAA--NSMKGGETEALQRLKKFAAEYQA-QPPKGNK 363
+ S+ L+ +S K + N GGE A R+ + + K +
Sbjct: 184 KLSQTLSVHKPLLNTEPLVSYKPKHTSSKNGYTGGEENARARINDYFFNTDSIASYKETR 243
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+G + G +FS + S +LA G +SP + +L T A ND +
Sbjct: 244 NG----LDGWDFSSRFSAYLAAGFVSPAYINQQL----TKYEAQRVKND--------STY 287
Query: 424 WLMFELLWRDFFR 436
WL FELLWR+FF
Sbjct: 288 WLFFELLWREFFH 300
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 143/321 (44%), Gaps = 45/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I W R DLR++DN L A V+ V+C DP + D P R +L+ +
Sbjct: 3 IFWHRRDLRINDNIGLAKAYTRDKKVIGVFCLDPNILNR-----DDIAPARVKYLLGCLE 57
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ Q GSDL++ PE ++ LA+ + ADAVY + +V ++ + A+K++
Sbjct: 58 ALKTKYQKLGSDLLIFHNTPEEIIPSLAEKLKADAVYWNLDVEPFSRHRDKNVSQALKEK 117
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
IE + FW L+ ++ K + T Y F + +++ QL GL D
Sbjct: 118 SIETQTFWDQLLHSPGEILSKSNQTAYTVYTPFWRNWEAQPKSSPVDSPQQLTGL---ND 174
Query: 306 VEPG--------DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
+E +IPSL DLG A + + GE AL+RL+ F Q+
Sbjct: 175 LEKTIVKELGTINIPSLNDLGFPWDADL---------PLSPGEESALERLEYFC---QSL 222
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
D N+ + G + ++S L G +S R+++ KK+ ++ + S
Sbjct: 223 IYNYECDRNYPFLDGTS---QLSAALKFGAISVRTIW---KKSQAELTNCN--------S 268
Query: 418 SGAGSNWLMF--ELLWRDFFR 436
A N + + E+ WR+F++
Sbjct: 269 DEARENIIAWQKEIAWREFYQ 289
>gi|408389293|gb|EKJ68755.1| hypothetical protein FPSE_11060 [Fusarium pseudograminearum CS3096]
Length = 703
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 150/360 (41%), Gaps = 60/360 (16%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDY----------------GKSS 167
+ R DLR DN L T+++ +LP+Y P KS
Sbjct: 8 VYLLRRDLRAIDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----ADA 221
G F + GP RA F E + D++KN + GS +++R+GK + VL L K++ D
Sbjct: 68 VGRFWRCGPLRAKFQAECIWDVKKNFEDIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGGF 278
V+ E S +E+ + + + EGI K W Y +DD L + P + +
Sbjct: 128 VWMTEEPSKEELDDQNAVASVCSKEGIGFK-LWHDEKYFIDDRDNGLKDPQDTPDVFTTY 186
Query: 279 RE-KVKGVEIRKTIEALDQLKGLPSR-----GDVEPGDIPSLLDLG------------LS 320
R+ + E + Q LPS P IP+ D +S
Sbjct: 187 RKTQEPLRERPRPPLPRPQAGSLPSFPSWIPPQQAPFRIPNNYDEFERLLLEPVKAPIIS 246
Query: 321 QSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKIS 380
+G K +A+ KGGET A RL + ++G + G +S K+S
Sbjct: 247 DPPPFPEGAK-SAHPFKGGETPAWDRLYHLIKSGAMTTYQETRNG----LLGTEYSTKLS 301
Query: 381 PWLAMGCLSPRSMFDELKK----TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+LAMG ++ RS+ EL K + S S + GE+ GS + FELLWRD+ R
Sbjct: 302 AFLAMGTITARSIHAELVKFEDGSEESYSTGFGFGKGEN----EGSRAVRFELLWRDYMR 357
>gi|410973791|ref|XP_003993331.1| PREDICTED: cryptochrome-2, partial [Felis catus]
Length = 582
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 12 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 66
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 67 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 126
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 127 EAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 186
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 187 RAEIQENHDEAYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 239
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 240 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 287
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 288 STPPLS-------LFGQLLWREFF 304
>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
Length = 536
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 148/325 (45%), Gaps = 39/325 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
++++WFR LR+HDN +L A+ S V PV+ DP D S G + G R F
Sbjct: 6 STLMWFRKGLRIHDNPALEYASKGSNFVYPVFVIDPHYMKPDPNAFSPGSTRAGLNRIKF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES++DL +L+ GS L+V G+P VL+ K V + + K++
Sbjct: 66 LLESLADLDLSLKKLGSKLLVLKGEPSQVLISCLKEWDVKRVCFEYDTDPYYQALDVKVK 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
GIEV TL++ D+ K G+ P Y F KV G + +
Sbjct: 126 DFASSVGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL-KVAGEPSWASSPLSISISS 184
Query: 300 LPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
LP GDV E ++P++ +LG + +GGE+EAL+ L K++
Sbjct: 185 LPPVGDVGSCEISEVPTVEELGYGDVE------QDEWTPFRGGESEALKSLRESIKDKEW 238
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A ++ PKG+ S + + +SP+L GCLS R F L+ ++
Sbjct: 239 IANFEK--PKGDP-----SAFVKPATTVLSPYLKFGCLSSRYFFQCLQDVYRNV------ 285
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ +S S L+ +LLWRDFF
Sbjct: 286 ---KKHTSPPVS--LVGQLLWRDFF 305
>gi|344247813|gb|EGW03917.1| Cryptochrome-2 [Cricetulus griseus]
Length = 577
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 7 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 61
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 62 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 121
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 122 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGAVTSQQMENC 181
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 182 RAEIQENHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 234
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 235 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 282
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 283 STPPLS-------LFGQLLWREFF 299
>gi|84385647|ref|ZP_00988678.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
Length = 462
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 46/327 (14%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F NDLR++DN+ L A +SV L +P + + +R +
Sbjct: 1 MKKIGLYLFTNDLRINDNQLLYYAA-QSVDKLICVIVEPTLVRFSADLAQEQSYSAHRQA 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVG---KPETVLVELAKAIGADAV---YAHREVSHDEV 233
F+ +S+++L NL G LVV +P+T L+ I + V +A+ +DE
Sbjct: 60 FVSQSIANLESNLVKLGQQLVVIRSNHLEPDTAEKTLSHIIVSQHVTHFFANAHCGYDER 119
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+ I+ + + + + STL+ +LPF+L ++P+++ FR K +E
Sbjct: 120 QLIRSIQRQSPNLVMCLPH--HSTLFDSHELPFELSKVPSSFTKFR---------KLVEH 168
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK-----GGETEALQRLK 348
LD +R + +P + L L+ ++ +S P S+ GGE L L+
Sbjct: 169 LD-----VNRNETVISALPPAVRLALTSTSTISLFSSPNDESVVISDYWGGEGAGLAHLE 223
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ + A K ++ G S K SPWLA+GC+SP++++ LK+ A
Sbjct: 224 NYFSHDYAFNYKQTRN----VFDGIENSTKFSPWLALGCVSPKTIYCHLKQ----FEADH 275
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
ND + W+ FELLWR++F
Sbjct: 276 GIND--------STYWIYFELLWREYF 294
>gi|229515204|ref|ZP_04404664.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TMA 21]
gi|229347909|gb|EEO12868.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TMA 21]
Length = 462
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 34/314 (10%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V + P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTLLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF + +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFAIEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 179 P---IEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKE 225
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 226 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 269
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 TYWIFFELLWREYF 283
>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
Length = 596
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 143/324 (44%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 26 SSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 80
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL ++L+ S L V G+P V L K G + + + + I K
Sbjct: 81 LEDLDRSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 140
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEAL--DQLKGL 300
+ G+EV TLY LD + G+ P Y F+ + +E+ RK + ++ Q++G
Sbjct: 141 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGC 200
Query: 301 PS---RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 201 QAEIQESHDETYGVPSLEELGFP-----TEGLGPAV--WRGGETEALARLDKHLERKAWV 253
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N S G +SP+L GCLS R + L + K N
Sbjct: 254 ASYER--PRMNASSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYRKV----KRN 301
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 302 STPPLS-------LFGQLLWREFF 318
>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
Length = 589
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 19 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 73
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 74 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 133
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 134 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 193
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 194 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 246
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 247 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 294
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 295 STPPLS-------LFGQLLWREFF 311
>gi|46129334|ref|XP_389028.1| hypothetical protein FG08852.1 [Gibberella zeae PH-1]
gi|97047717|sp|Q4I1Q6.1|CRYD_GIBZE RecName: Full=Putative cryptochrome DASH
Length = 678
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 141/349 (40%), Gaps = 57/349 (16%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDY----------------GKSS 167
+ R DLR DN L T+++ +LP+Y P KS
Sbjct: 8 VYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----ADA 221
G F + GP RA F E + D++KN + GS +++R+GK + VL L K++ D
Sbjct: 68 VGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--------------LPFK 267
V+ E S +E+ + + + EGI K W Y +D+ +
Sbjct: 128 VWMTEEPSKEELDDQTAVASVCSKEGIGFK-LWHDEKYFIDEKTQEPLRERPRPPLPRPQ 186
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ 327
G +P+ + I + ++L +EP P + D +
Sbjct: 187 AGSLPSFPSWIPPQQAPFRIPDDYDEFERLL-------LEPVKAPIISD-----PPQFPE 234
Query: 328 GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGC 387
G K +A+ KGGET A RL + ++G + G +S K+S +LAMG
Sbjct: 235 GAK-SAHPFKGGETPAWDRLYHLIKSGAMTTYQETRNG----LLGTEYSTKLSAFLAMGT 289
Query: 388 LSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
++ RS+ EL K + G G+ + FELLWRD+ R
Sbjct: 290 ITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMR 338
>gi|417821168|ref|ZP_12467782.1| cryptochrome DASH [Vibrio cholerae HE39]
gi|423956045|ref|ZP_17734884.1| cryptochrome, DASH family protein [Vibrio cholerae HE-40]
gi|423985115|ref|ZP_17738433.1| cryptochrome, DASH family protein [Vibrio cholerae HE-46]
gi|340038799|gb|EGQ99773.1| cryptochrome DASH [Vibrio cholerae HE39]
gi|408657960|gb|EKL29035.1| cryptochrome, DASH family protein [Vibrio cholerae HE-40]
gi|408664513|gb|EKL35347.1| cryptochrome, DASH family protein [Vibrio cholerae HE-46]
Length = 461
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 137/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE +S +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLSQVEVTDIYVDAMAGSDERQSIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLMDI----------VTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|118572252|sp|Q49AN0.2|CRY2_HUMAN RecName: Full=Cryptochrome-2
gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
Length = 593
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKRV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|395815587|ref|XP_003781307.1| PREDICTED: cryptochrome-2 [Otolemur garnettii]
Length = 612
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 42 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 96
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 97 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 156
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 157 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 216
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 217 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 269
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 270 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 317
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 318 STPPLS-------LFGQLLWREFF 334
>gi|372269942|ref|ZP_09505990.1| DASH family cryptochrome [Marinobacterium stanieri S30]
Length = 440
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 129/314 (41%), Gaps = 39/314 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WF D+R+ DN +L A + +L VY D R + + G R FL E ++
Sbjct: 5 LFWFTQDIRLDDNPALQQAARQCDQLLLVYVHDSRLERAGNFNAARMGRARRDFLFEGLA 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL + L A G L++ G P VL EL D ++ R E + +++
Sbjct: 65 DLGQQLDACGQQLLMFTGDPIEVLSELVSRYRIDRLFCTRSSGVYEQRQLSSLQSRFPHL 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
++ G TL+ L + P ++ FR +V+ +ALD +P
Sbjct: 125 NASIRD--GYTLFDQSQLTEIVDPFPVSFSAFRRRVE--------KALD----IP----- 165
Query: 307 EP----GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
EP D+P L + + G GGE A L+++ + + P
Sbjct: 166 EPLSPVLDLPPALKIEARGEQLSTSAGYHNDTWFAGGEQAAQSHLERY---FSSLLPSTY 222
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K ++ + G + SPWLA G LSPR + +LK+ A +
Sbjct: 223 KQVRNE-LDGLENGTRFSPWLAQGSLSPRRIMQQLKQYEARQGA------------NEST 269
Query: 423 NWLMFELLWRDFFR 436
W+ FELLWR++F+
Sbjct: 270 YWIFFELLWREYFQ 283
>gi|374686520|emb|CCF55053.1| DASH-cryptochrome [Fusarium fujikuroi]
Length = 714
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 149/359 (41%), Gaps = 58/359 (16%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDY--------GKSS-------- 167
+ R DLR DN L T+++ +LP+Y P GK S
Sbjct: 8 VYLLRRDLRAIDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVAEGKKSPYPEARSQ 67
Query: 168 -SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-----GADA 221
F + GP RA F ES+ D+++NL+ S ++VRVG + VL L K++ D
Sbjct: 68 VGRFWRCGPVRAKFQAESIWDVKQNLEDISSGMLVRVGNFDNVLKHLIKSLHDEHQSVDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGGF 278
V+ EVS +EV + + + + I K W Y++DD L E+P + F
Sbjct: 128 VWMTEEVSKEEVDDQNAVASVCSENNINFK-LWQDEKYYIDDRDTGLDDPKELPDVFTTF 186
Query: 279 REKVKGVEIRK----------TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQG 328
R+ + + R ++ LP + D + + L +
Sbjct: 187 RKTQEPLRERPRASLPRPQAGSLPPFPSSWALPQEPPFQIPDNYNDFEQRLLEPINSMVP 246
Query: 329 GKP-------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISP 381
P +A+ KGGE A RL + ++G + G ++S K+S
Sbjct: 247 DPPVYPEDARSAHPFKGGENPAWDRLYHLIKSGSMTTYQETRNG----LLGIDYSTKLSA 302
Query: 382 WLAMGCLSPRSMFDELKK----TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+LA+G +S R + +EL K S S A + GE+ G+ + FELLWRD+ R
Sbjct: 303 YLALGSISARCIHEELVKFEDGQEQSYSKAIGFGQGEN----EGTKAVRFELLWRDYMR 357
>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 isoform 1 [Callithrix jacchus]
Length = 593
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
Length = 594
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 141/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 249
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 250 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYRKV----KRN 297
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 298 STPPLS-------LFGQLLWREFF 314
>gi|380254429|dbj|BAL72539.1| cryptochrome3 [Siganus guttatus]
Length = 507
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 143/321 (44%), Gaps = 40/321 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+E++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGIN-----RWRFLLEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDNSLKKLNSRLFVVKGQPTDVFPRLLKEWKVTRLTFEYDPEPYGKERDGAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEIRK------TIEAL 294
G+E TLY+LD ++ EM P + F+ V+ +E+ + T + +
Sbjct: 120 FGVETIVRNSHTLYNLD----RIIEMNSNNPPLTFKRFQTIVRRLELPRRPLAPITQQQM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
D+ + + + IPSL +LG G PAA +GGE+EAL RL K +
Sbjct: 176 DKCRTKIADNHDQLYSIPSLEELGFRTE------GLPAA-VWRGGESEALDRLNKHLDKK 228
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ N S+Y + +SP+L GCLS R ++ L++ +
Sbjct: 229 VWVANLEHPRVNTCSLYAS--PTGLSPYLRFGCLSCRVLYYNLRELYMKLC--------- 277
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
SS S L +LLWR+FF
Sbjct: 278 KHSSPPLS--LFGQLLWREFF 296
>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 44 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 98
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 159 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 218
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 219 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 271
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 272 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 319
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 320 STPPLS-------LFGQLLWREFF 336
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 140/325 (43%), Gaps = 51/325 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP D P R S++I S++
Sbjct: 7 LFWHRRDLRIRDNLGLAAARKRTPKVVGVFCLDP-----GILNGDDIAPARVSYMIGSLA 61
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++N Q+ GS+L++ GKPE + LA A+GA AVY +R+V + + + +A+KD
Sbjct: 62 ELQENYQSAGSELLILKGKPEEAIPNLASALGAAAVYWNRDVEPYARERDPNVASALKDR 121
Query: 247 GIE-VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR-- 303
IE +W L D L GE Y F K E + GL
Sbjct: 122 DIESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLSPHEK 181
Query: 304 ------GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA------ 351
G++ D+P+ LG + ++ GE AL +L+KF
Sbjct: 182 SLANKAGNI---DLPTAKALGYEWENEL---------LLQPGEAAALAQLEKFCDDRRVI 229
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
AEY Q ++ SI G + +S L G L R++++ +A+ ++
Sbjct: 230 AEYDQQ-------RDYPSIAG---TSTLSAALKFGTLGIRTVWE---------AASDAYS 270
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
S + EL WR+F++
Sbjct: 271 RARSEETHRNIRTWQQELAWREFYQ 295
>gi|297579336|ref|ZP_06941264.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
gi|297536930|gb|EFH75763.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
Length = 462
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 34/314 (10%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLFPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 179 P---IEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKE 225
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 226 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYTMLQRYEAVHGA----ND--------S 269
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 TYWIFFELLWREYF 283
>gi|153826234|ref|ZP_01978901.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
gi|417825035|ref|ZP_12471623.1| cryptochrome DASH [Vibrio cholerae HE48]
gi|149739999|gb|EDM54174.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
gi|340046520|gb|EGR07450.1| cryptochrome DASH [Vibrio cholerae HE48]
Length = 461
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 137/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G LLD+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLLDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|229529162|ref|ZP_04418552.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 12129(1)]
gi|229332936|gb|EEN98422.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 12129(1)]
Length = 461
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 137/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSCVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G LLD+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLLDI----------VAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
Length = 440
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 134/316 (42%), Gaps = 37/316 (11%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WF DLR+HDN +L A ++S +L VY DPR + G +R FL +S
Sbjct: 2 VSLYWFTRDLRLHDNAAL-LAASKSDMLLCVYVVDPRWFVPGPFQCRALGAHRWRFLWQS 60
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L ++L+ G L + GKPE V+ +L + V R E + + +
Sbjct: 61 LISLERDLRPLGQRLHIAFGKPEQVIPDLVHDHNINRVIRSRLPGTREAVQWKSLRDKLP 120
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT----IEALDQLKGL 300
+ F +L+ LP L +P + FR++V+ R + I L L
Sbjct: 121 QTVFQQ--FETLSLFTEGSLPMDLSHLPDTFSQFRKQVEKTGNRNSERLRIRTLTALPPA 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
P G+ P A+++ P +GGE+ L+RL +
Sbjct: 179 PGYPQDNRGECP-----------AIAEPRHPIG--FRGGESAGLERLNDYLF---VNHRI 222
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS-SG 419
+ +++ A+ S ++SPWLA G LS R + D + +D E+
Sbjct: 223 AHYKETRNALDEADASSRLSPWLANGALSAREVADTI-------------SDYENQHVKN 269
Query: 420 AGSNWLMFELLWRDFF 435
+ WL FELLWR++F
Sbjct: 270 ESTYWLWFELLWREYF 285
>gi|428779785|ref|YP_007171571.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
gi|428694064|gb|AFZ50214.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
Length = 476
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 42/319 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A+ ++ VL V+CFDP+ K D+ P R +L+ +
Sbjct: 5 LFWHRRDLRLKDNIGLFQAHQKTAKVLGVFCFDPQLLKK-----DQVAPARIKYLLGCLQ 59
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++N + GSDL++ P T + LA+ + A V+ ++++ K + +++A++++
Sbjct: 60 ELQENYRRVGSDLLILNADPVTAISNLAQTLNATGVFWNQDIEPYSRKRDRAVQSALEEQ 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF---REKVKGVEIRKTIEALDQLKGLPSR 303
GI V+ FW L+ D+ K E Y F +K I++LD L R
Sbjct: 120 GITVQTFWDQLLHSPGDILTKSDEPYKVYTPFWKNWQKQDKATPTGEIKSLDGLTSEEHR 179
Query: 304 GDVEPGDI--PSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEYQAQ 357
G I P L DLG S + + GE+ A RL+ F +Y
Sbjct: 180 KADTVGVIPLPKLNDLGFSWENEL---------PLTPGESAARDRLQWFCDRAILDY--- 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
+++ N+ +I G + +S L G + R +++ AT+ + + +D +
Sbjct: 228 ----DQNRNYPAIEGTSI---LSAALKFGAIGIREVWE-----ATNQAEENTRSDEARDN 275
Query: 418 SGAGSNWLMFELLWRDFFR 436
A EL WR+F++
Sbjct: 276 INAWRQ----ELAWREFYQ 290
>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2 [Pongo abelii]
Length = 614
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 44 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 98
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 159 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 218
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 219 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 271
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 272 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 319
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 320 STPPLS-------LFGQLLWREFF 336
>gi|153800458|ref|ZP_01955044.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
gi|124124084|gb|EAY42827.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
Length = 462
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 34/314 (10%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE +S I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEVTDIYVDAMAGSDERQSIAHIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 179 P---IEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKE 225
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 226 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 269
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 TYWIFFELLWREYF 283
>gi|28900058|ref|NP_799713.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|308094879|ref|ZP_05892988.2| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
gi|308095330|ref|ZP_05905084.2| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
gi|308125427|ref|ZP_05775230.2| cryptochrome dash [Vibrio parahaemolyticus K5030]
gi|81839701|sp|Q87JP5.1|CRYD_VIBPA RecName: Full=Cryptochrome DASH
gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|308086793|gb|EFO36488.1| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
gi|308091994|gb|EFO41689.1| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
gi|308115600|gb|EFO53140.1| cryptochrome dash [Vibrio parahaemolyticus K5030]
Length = 445
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 137/318 (43%), Gaps = 43/318 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYC---FDPRDYGKSSSGFDKTGPYRAS 179
++ + WF DLR+HDN L A++ ++ +YC P + + G R
Sbjct: 3 KKIGLYWFTFDLRLHDNSLLVDASSFLDELVCLYCRPSVTPFLHHFAQEV--TLGRARQK 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ S+ +L L G L P L + + +Y+ DE + I
Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLSVTHLYSDAMAGSDE----QSI 116
Query: 240 EAAMKDEGIEVKYFWGS--TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++DE + S +L+ LPF L ++P + FR+ V+G++I I+A +L
Sbjct: 117 LHKLQDEYPHLVIVQHSVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPSRL 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
+P + +P+L +SA S GGE L +++ A
Sbjct: 177 PPMP-----KGAQLPTLSSFYFDESALFS-----------GGEWSGLAHCRRYFFSGLAS 220
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + G +S K SPWLA+GC+SPR + LK+ + A ND
Sbjct: 221 SYKETRNG----LDGMAYSTKFSPWLALGCVSPRMIHAMLKQYEQTQGA----ND----- 267
Query: 418 SGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 ---STYWIYFELLWREYF 282
>gi|426368087|ref|XP_004051044.1| PREDICTED: cryptochrome-2 isoform 1 [Gorilla gorilla gorilla]
Length = 614
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 44 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 98
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 159 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 218
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 219 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 271
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 272 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 319
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 320 STPPLS-------LFGQLLWREFF 336
>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
gi|397473567|ref|XP_003808279.1| PREDICTED: cryptochrome-2 isoform 1 [Pan paniscus]
Length = 614
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 44 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 98
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 159 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 218
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 219 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 271
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 272 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 319
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 320 STPPLS-------LFGQLLWREFF 336
>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
Length = 501
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 151/325 (46%), Gaps = 48/325 (14%)
Query: 125 ASIV-WFRNDLRVHDNESLNTANNESVS----VLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AS++ WFR DLR+HDN +L A NE+ + + P+Y DP ++ G R
Sbjct: 5 ASVIHWFRLDLRLHDNLALRNAINEAENRKQILRPIYVIDP-------DIKNRVGCNRLR 57
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL +S+ +L +L+ + L V GK L +L + ++ D VK +E I
Sbjct: 58 FLFQSLKNLDTSLRKINTRLYVIKGKAIECLPKLFDEWHVKFLTLQVDIDADLVKQDEVI 117
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIE----AL 294
E + I V T+Y + + K G +P Y F V V+++ I+
Sbjct: 118 EEFCEANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDIIQISKGVS 177
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
D+ K S D + DIPSL + G+++S +S+ P GGE+E L+RL + A+
Sbjct: 178 DECKA--SDYDSQGYDIPSLEEFGVNES-ELSECKYP------GGESEGLKRLDVYMAKK 228
Query: 355 QA----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
Q + PK + + S + +SP+++ GCLS + + +LK+
Sbjct: 229 QWVCNFEKPKSSPNSIEPS------TTVLSPYISHGCLSAKLFYHKLKQV---------- 272
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+G + S LM +L+WR+F+
Sbjct: 273 ENGSKHTLPPVS--LMGQLMWREFY 295
>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
gi|81867613|sp|Q923I8.1|CRY2_RAT RecName: Full=Cryptochrome-2
gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
Length = 594
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 141/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALVRLDKHLERKAWV 249
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 250 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYRKV----KRN 297
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 298 STPPLS-------LFGQLLWREFF 314
>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
gi|81882058|sp|Q9R194.1|CRY2_MOUSE RecName: Full=Cryptochrome-2
gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
Length = 592
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 141/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K A+ +
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 249
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 250 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 297
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 298 STPPLS-------LFGQLLWREFF 314
>gi|407072254|ref|ZP_11103092.1| deoxyribodipyrimidine photolyase [Vibrio cyclitrophicus ZF14]
Length = 495
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 144/330 (43%), Gaps = 40/330 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTAN---NESVSVL--PVYCFDPRDYGKSSSGFDKTGPY 176
+++ + F NDLR DNE L A+ +E + V+ P R + K + G
Sbjct: 1 MKKIGLYLFTNDLRADDNELLGKASRLVDELICVVIEPNLSVFSRKFAKE----QQYGAE 56
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPET--------VLVELAKAIGADAVYAHREV 228
RA F+ +S++DL L G +L+V T L E+ K+ A ++
Sbjct: 57 RAKFISQSITDLESRLANLGQELIVLRSSTLTDEEMSRDFALSEIIKSQQATHLFVSHHC 116
Query: 229 SHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
DE + I+ + ++ STL L+ LPF+L ++P ++ FR+ V+ + I
Sbjct: 117 GFDERHLVQSIQFNFPKLILMQQH--HSTLLELEQLPFELSKLPRSFTKFRKLVEHLPID 174
Query: 289 KTIEALDQLKGLP---SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQ 345
++ L +P S + + L+ S G + S GGE L
Sbjct: 175 TQSLSITTLPPMPKALSHCHSKQASNSKFDEHCLNISNTNVNGLHNS--SFIGGEQAGLA 232
Query: 346 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
L +Y + P ++ G S K SPWLA+GC+SP++++ L +
Sbjct: 233 HLH----DYFSHPYAHQYKQTRNAFDGKENSTKFSPWLALGCVSPKTIYRNLVQF----- 283
Query: 406 AASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ + GS+ + + W+ FELLWR++F
Sbjct: 284 ------EAKHGSNDS-TYWIFFELLWREYF 306
>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
Length = 584
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 141/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 14 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 68
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 69 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 128
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K A+ +
Sbjct: 129 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESC 188
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 189 RAEIQENHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 241
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 242 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 289
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 290 STPPLS-------LFGQLLWREFF 306
>gi|153214304|ref|ZP_01949321.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
gi|124115452|gb|EAY34272.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
Length = 462
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 34/314 (10%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 179 P---IEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKE 225
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 226 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 269
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 TYWIFFELLWREYF 283
>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 562
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 149/357 (41%), Gaps = 64/357 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S++WFR LRVHDN +L + S PV+ DP + K S + G R FL++S+
Sbjct: 13 SLIWFRKALRVHDNPALAAGIARAKSAQPVFVLDPW-FCKPS----RVGANRMRFLLQSL 67
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL L+ RGS L+V G+P VL K D V ++ + + A++
Sbjct: 68 RDLDATLRERGSSLLVLHGEPRVVLPRACKTWKVDLVTWEHDIEPYAKMRDTAVRGALER 127
Query: 246 EGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS-- 302
G+E G TLY ++++ K G+ PT Y F + V ++ ALD K +P+
Sbjct: 128 AGVECASSSGHTLYDVEEMLAKCHGKPPTTYSQFLKIVD--KMGAPAAALDAPKAMPAPF 185
Query: 303 -----------RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG--------GETEA 343
G + IP+L +LG ++ +G + +G TE
Sbjct: 186 TGTAEETKELVAGVADAYGIPTLEELGY-EAMHDDEGFQAIGGETEGLRRLRRQLSRTEW 244
Query: 344 LQRLKK--------FAAEYQAQP-PKG----------------NKDGNHDSIYGANFSCK 378
+ +K F A +P PK N N D + + +
Sbjct: 245 VHTFQKPDTNPTTLFHALGAKKPKPKSPFEIAARDAGSKNDATNTAANSDMLMTPS-TTA 303
Query: 379 ISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+SP++ GC+SPR + EL +G+ S + LM +L+WR+F+
Sbjct: 304 LSPYMKFGCVSPRVFYHELNAVLAKF-------EGKGQPSQPPVS-LMGQLMWREFY 352
>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
Length = 568
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L +A + SV VY DP + SSSG G R FL++S
Sbjct: 8 SSVHWFRKGLRLHDNPALLSALRGANSVRCVYILDPW-FAASSSG----GVNRWRFLLQS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 63 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAK 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G P Y F+ + +EI + T + ++
Sbjct: 123 EGGVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSVTRQQMEAC 182
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ R E +PSL +LG + + GGETEAL RL K +
Sbjct: 183 RAEIKRNHDETYGVPSLEELGFHRE-------NKGSAIWPGGETEALARLDRHLERKAWV 235
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS + + L++ + K N
Sbjct: 236 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCKLFYYRLQELYRKV----KKN 283
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
+ S L +LLWR+FF
Sbjct: 284 NPPPLS-------LFGQLLWREFF 300
>gi|15641816|ref|NP_231448.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585836|ref|ZP_01675630.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
gi|147674040|ref|YP_001217353.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
gi|153817785|ref|ZP_01970452.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
gi|153821143|ref|ZP_01973810.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
gi|227081943|ref|YP_002810494.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|227118263|ref|YP_002820159.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|229508087|ref|ZP_04397592.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae BX 330286]
gi|229511674|ref|ZP_04401153.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae B33]
gi|229518813|ref|ZP_04408256.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC9]
gi|229607648|ref|YP_002878296.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae MJ-1236]
gi|254848903|ref|ZP_05238253.1| cryptochrome DASH [Vibrio cholerae MO10]
gi|255745421|ref|ZP_05419370.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholera CIRS 101]
gi|262169806|ref|ZP_06037497.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC27]
gi|360035700|ref|YP_004937463.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|417813861|ref|ZP_12460514.1| cryptochrome DASH [Vibrio cholerae HC-49A2]
gi|417817599|ref|ZP_12464228.1| cryptochrome DASH [Vibrio cholerae HCUF01]
gi|418334835|ref|ZP_12943749.1| cryptochrome DASH [Vibrio cholerae HC-06A1]
gi|418338454|ref|ZP_12947348.1| cryptochrome DASH [Vibrio cholerae HC-23A1]
gi|418346371|ref|ZP_12951133.1| cryptochrome DASH [Vibrio cholerae HC-28A1]
gi|418350132|ref|ZP_12954863.1| cryptochrome DASH [Vibrio cholerae HC-43A1]
gi|418355774|ref|ZP_12958493.1| cryptochrome DASH [Vibrio cholerae HC-61A1]
gi|419826796|ref|ZP_14350295.1| cryptochrome, DASH family protein [Vibrio cholerae CP1033(6)]
gi|421317849|ref|ZP_15768417.1| cryptochrome DASH [Vibrio cholerae CP1032(5)]
gi|421321591|ref|ZP_15772144.1| cryptochrome DASH [Vibrio cholerae CP1038(11)]
gi|421325388|ref|ZP_15775912.1| cryptochrome DASH [Vibrio cholerae CP1041(14)]
gi|421329050|ref|ZP_15779560.1| cryptochrome DASH [Vibrio cholerae CP1042(15)]
gi|421336544|ref|ZP_15787005.1| cryptochrome DASH [Vibrio cholerae CP1048(21)]
gi|421339978|ref|ZP_15790410.1| cryptochrome DASH [Vibrio cholerae HC-20A2]
gi|421348128|ref|ZP_15798505.1| cryptochrome DASH [Vibrio cholerae HC-46A1]
gi|422896922|ref|ZP_16934375.1| cryptochrome DASH [Vibrio cholerae HC-40A1]
gi|422903121|ref|ZP_16938101.1| cryptochrome DASH [Vibrio cholerae HC-48A1]
gi|422907006|ref|ZP_16941813.1| cryptochrome DASH [Vibrio cholerae HC-70A1]
gi|422913856|ref|ZP_16948362.1| cryptochrome DASH [Vibrio cholerae HFU-02]
gi|422926062|ref|ZP_16959076.1| cryptochrome DASH [Vibrio cholerae HC-38A1]
gi|423145381|ref|ZP_17132975.1| cryptochrome DASH [Vibrio cholerae HC-19A1]
gi|423150057|ref|ZP_17137371.1| cryptochrome DASH [Vibrio cholerae HC-21A1]
gi|423153877|ref|ZP_17141058.1| cryptochrome DASH [Vibrio cholerae HC-22A1]
gi|423156960|ref|ZP_17144053.1| cryptochrome DASH [Vibrio cholerae HC-32A1]
gi|423160531|ref|ZP_17147471.1| cryptochrome DASH [Vibrio cholerae HC-33A2]
gi|423165349|ref|ZP_17152080.1| cryptochrome DASH [Vibrio cholerae HC-48B2]
gi|423731368|ref|ZP_17704671.1| cryptochrome, DASH family protein [Vibrio cholerae HC-17A1]
gi|423766383|ref|ZP_17712789.1| cryptochrome, DASH family protein [Vibrio cholerae HC-50A2]
gi|423895259|ref|ZP_17727006.1| cryptochrome, DASH family protein [Vibrio cholerae HC-62A1]
gi|423930697|ref|ZP_17731400.1| cryptochrome, DASH family protein [Vibrio cholerae HC-77A1]
gi|424002812|ref|ZP_17745887.1| cryptochrome DASH [Vibrio cholerae HC-17A2]
gi|424006601|ref|ZP_17749571.1| cryptochrome DASH [Vibrio cholerae HC-37A1]
gi|424024582|ref|ZP_17764233.1| cryptochrome DASH [Vibrio cholerae HC-62B1]
gi|424027467|ref|ZP_17767070.1| cryptochrome DASH [Vibrio cholerae HC-69A1]
gi|424586738|ref|ZP_18026317.1| cryptochrome DASH [Vibrio cholerae CP1030(3)]
gi|424595385|ref|ZP_18034706.1| cryptochrome DASH [Vibrio cholerae CP1040(13)]
gi|424606991|ref|ZP_18045935.1| cryptochrome DASH [Vibrio cholerae CP1050(23)]
gi|424610816|ref|ZP_18049655.1| cryptochrome DASH [Vibrio cholerae HC-39A1]
gi|424613626|ref|ZP_18052414.1| cryptochrome DASH [Vibrio cholerae HC-41A1]
gi|424617609|ref|ZP_18056281.1| cryptochrome DASH [Vibrio cholerae HC-42A1]
gi|424622387|ref|ZP_18060895.1| cryptochrome DASH [Vibrio cholerae HC-47A1]
gi|424645352|ref|ZP_18083088.1| cryptochrome DASH [Vibrio cholerae HC-56A2]
gi|424653119|ref|ZP_18090499.1| cryptochrome DASH [Vibrio cholerae HC-57A2]
gi|424656941|ref|ZP_18094226.1| cryptochrome DASH [Vibrio cholerae HC-81A2]
gi|440710021|ref|ZP_20890672.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 4260B]
gi|443504179|ref|ZP_21071137.1| cryptochrome DASH [Vibrio cholerae HC-64A1]
gi|443508076|ref|ZP_21074840.1| cryptochrome DASH [Vibrio cholerae HC-65A1]
gi|443511919|ref|ZP_21078557.1| cryptochrome DASH [Vibrio cholerae HC-67A1]
gi|443515477|ref|ZP_21081988.1| cryptochrome DASH [Vibrio cholerae HC-68A1]
gi|443519268|ref|ZP_21085665.1| cryptochrome DASH [Vibrio cholerae HC-71A1]
gi|443524161|ref|ZP_21090374.1| cryptochrome DASH [Vibrio cholerae HC-72A2]
gi|443531760|ref|ZP_21097774.1| cryptochrome DASH [Vibrio cholerae HC-7A1]
gi|443535556|ref|ZP_21101434.1| cryptochrome DASH [Vibrio cholerae HC-80A1]
gi|443539103|ref|ZP_21104957.1| cryptochrome DASH [Vibrio cholerae HC-81A1]
gi|449055752|ref|ZP_21734420.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae O1 str. Inaba G4222]
gi|81858080|sp|Q9KR33.1|CRYD_VIBCH RecName: Full=Cryptochrome DASH
gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549974|gb|EAX59992.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
gi|126511605|gb|EAZ74199.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
gi|126521339|gb|EAZ78562.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
gi|146315923|gb|ABQ20462.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
gi|227009831|gb|ACP06043.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|227013713|gb|ACP09923.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|229343502|gb|EEO08477.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC9]
gi|229351639|gb|EEO16580.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae B33]
gi|229355592|gb|EEO20513.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae BX 330286]
gi|229370303|gb|ACQ60726.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae MJ-1236]
gi|254844608|gb|EET23022.1| cryptochrome DASH [Vibrio cholerae MO10]
gi|255737251|gb|EET92647.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholera CIRS 101]
gi|262022040|gb|EEY40750.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC27]
gi|340036347|gb|EGQ97323.1| cryptochrome DASH [Vibrio cholerae HC-49A2]
gi|340037322|gb|EGQ98297.1| cryptochrome DASH [Vibrio cholerae HCUF01]
gi|341621681|gb|EGS47418.1| cryptochrome DASH [Vibrio cholerae HC-70A1]
gi|341621766|gb|EGS47499.1| cryptochrome DASH [Vibrio cholerae HC-48A1]
gi|341622516|gb|EGS48170.1| cryptochrome DASH [Vibrio cholerae HC-40A1]
gi|341637517|gb|EGS62195.1| cryptochrome DASH [Vibrio cholerae HFU-02]
gi|341646268|gb|EGS70382.1| cryptochrome DASH [Vibrio cholerae HC-38A1]
gi|356417544|gb|EHH71159.1| cryptochrome DASH [Vibrio cholerae HC-06A1]
gi|356418417|gb|EHH72014.1| cryptochrome DASH [Vibrio cholerae HC-21A1]
gi|356422991|gb|EHH76452.1| cryptochrome DASH [Vibrio cholerae HC-19A1]
gi|356428437|gb|EHH81663.1| cryptochrome DASH [Vibrio cholerae HC-22A1]
gi|356430096|gb|EHH83305.1| cryptochrome DASH [Vibrio cholerae HC-23A1]
gi|356433450|gb|EHH86639.1| cryptochrome DASH [Vibrio cholerae HC-28A1]
gi|356440047|gb|EHH93008.1| cryptochrome DASH [Vibrio cholerae HC-32A1]
gi|356444628|gb|EHH97437.1| cryptochrome DASH [Vibrio cholerae HC-43A1]
gi|356445628|gb|EHH98430.1| cryptochrome DASH [Vibrio cholerae HC-33A2]
gi|356451161|gb|EHI03862.1| cryptochrome DASH [Vibrio cholerae HC-48B2]
gi|356452272|gb|EHI04951.1| cryptochrome DASH [Vibrio cholerae HC-61A1]
gi|356646854|gb|AET26909.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|395916107|gb|EJH26937.1| cryptochrome DASH [Vibrio cholerae CP1032(5)]
gi|395917226|gb|EJH28054.1| cryptochrome DASH [Vibrio cholerae CP1041(14)]
gi|395918585|gb|EJH29409.1| cryptochrome DASH [Vibrio cholerae CP1038(11)]
gi|395927584|gb|EJH38347.1| cryptochrome DASH [Vibrio cholerae CP1042(15)]
gi|395931643|gb|EJH42387.1| cryptochrome DASH [Vibrio cholerae CP1048(21)]
gi|395939261|gb|EJH49943.1| cryptochrome DASH [Vibrio cholerae HC-20A2]
gi|395942707|gb|EJH53383.1| cryptochrome DASH [Vibrio cholerae HC-46A1]
gi|395959122|gb|EJH69569.1| cryptochrome DASH [Vibrio cholerae HC-56A2]
gi|395959778|gb|EJH70193.1| cryptochrome DASH [Vibrio cholerae HC-57A2]
gi|395962525|gb|EJH72821.1| cryptochrome DASH [Vibrio cholerae HC-42A1]
gi|395971040|gb|EJH80741.1| cryptochrome DASH [Vibrio cholerae HC-47A1]
gi|395973659|gb|EJH83213.1| cryptochrome DASH [Vibrio cholerae CP1030(3)]
gi|408007371|gb|EKG45449.1| cryptochrome DASH [Vibrio cholerae HC-39A1]
gi|408013336|gb|EKG51062.1| cryptochrome DASH [Vibrio cholerae HC-41A1]
gi|408032519|gb|EKG69101.1| cryptochrome DASH [Vibrio cholerae CP1040(13)]
gi|408043366|gb|EKG79364.1| cryptochrome DASH [Vibrio cholerae CP1050(23)]
gi|408053819|gb|EKG88818.1| cryptochrome DASH [Vibrio cholerae HC-81A2]
gi|408607586|gb|EKK80989.1| cryptochrome, DASH family protein [Vibrio cholerae CP1033(6)]
gi|408623990|gb|EKK96942.1| cryptochrome, DASH family protein [Vibrio cholerae HC-17A1]
gi|408634132|gb|EKL06401.1| cryptochrome, DASH family protein [Vibrio cholerae HC-50A2]
gi|408654129|gb|EKL25271.1| cryptochrome, DASH family protein [Vibrio cholerae HC-77A1]
gi|408655059|gb|EKL26184.1| cryptochrome, DASH family protein [Vibrio cholerae HC-62A1]
gi|408845209|gb|EKL85325.1| cryptochrome DASH [Vibrio cholerae HC-37A1]
gi|408845982|gb|EKL86094.1| cryptochrome DASH [Vibrio cholerae HC-17A2]
gi|408870230|gb|EKM09510.1| cryptochrome DASH [Vibrio cholerae HC-62B1]
gi|408878770|gb|EKM17763.1| cryptochrome DASH [Vibrio cholerae HC-69A1]
gi|439974244|gb|ELP50421.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 4260B]
gi|443431124|gb|ELS73676.1| cryptochrome DASH [Vibrio cholerae HC-64A1]
gi|443435282|gb|ELS81425.1| cryptochrome DASH [Vibrio cholerae HC-65A1]
gi|443438902|gb|ELS88617.1| cryptochrome DASH [Vibrio cholerae HC-67A1]
gi|443442887|gb|ELS96189.1| cryptochrome DASH [Vibrio cholerae HC-68A1]
gi|443447064|gb|ELT03719.1| cryptochrome DASH [Vibrio cholerae HC-71A1]
gi|443449495|gb|ELT09786.1| cryptochrome DASH [Vibrio cholerae HC-72A2]
gi|443457150|gb|ELT24547.1| cryptochrome DASH [Vibrio cholerae HC-7A1]
gi|443461096|gb|ELT32169.1| cryptochrome DASH [Vibrio cholerae HC-80A1]
gi|443465203|gb|ELT39863.1| cryptochrome DASH [Vibrio cholerae HC-81A1]
gi|448264791|gb|EMB02028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae O1 str. Inaba G4222]
Length = 461
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 136/315 (43%), Gaps = 37/315 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + G P
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETISLSAPM-------GYP 173
Query: 302 S-RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 174 HVLPPIEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYK 223
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 224 ETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND-------- 267
Query: 421 GSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 STYWIFFELLWREYF 282
>gi|254285235|ref|ZP_04960200.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
gi|421351561|ref|ZP_15801926.1| cryptochrome DASH [Vibrio cholerae HE-25]
gi|150424507|gb|EDN16443.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
gi|395952006|gb|EJH62620.1| cryptochrome DASH [Vibrio cholerae HE-25]
Length = 461
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|261211882|ref|ZP_05926169.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
RC341]
gi|260839232|gb|EEX65864.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
RC341]
Length = 461
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 135/320 (42%), Gaps = 47/320 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR------KTIEALD 295
I + +L LPF L +P+ + FR++V+ + + + + ++
Sbjct: 123 DFSSVHIHQQAL--RSLLSEPQLPFALEALPSTFTQFRKQVETLSLSAPMGYPRVLPPIE 180
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
Q LP G V +P ++ GGE L + + +
Sbjct: 181 QGWQLPLMGIVT----------------------EPNHSAFIGGEQAGLTHCQNYFSSML 218
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 219 PSRYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--- 267
Query: 416 GSSGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 -----STYWIFFELLWREYF 282
>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 540
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 144/334 (43%), Gaps = 48/334 (14%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+G A+ SI WFR LR+HDN +L A + V PV+ DP + K + G R
Sbjct: 2 SGGAV---SIHWFRKGLRLHDNAALLAALKGAKQVYPVFVLDPH-FAKP----EFVGVVR 53
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS-HDEVKSE 236
+FL+ES+ DL K+L+ GS L V GKP L E K + R+ + +++
Sbjct: 54 YNFLLESLRDLDKSLRTLGSRLYVLKGKPLQALEEKFKEWEVTRLTFERDTEPYAKLRDT 113
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGGFRE------KVKGVEI 287
+ E A K GIEV G TL+ + K G ++P Y F KV
Sbjct: 114 QARELAEK-HGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAALS 172
Query: 288 RKTIEALDQLKGLPSRG--DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQ 345
T E Q L D D+PSL D+G + + P GGETEAL+
Sbjct: 173 APTKEDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEVRFP------GGETEALE 226
Query: 346 RLKKF----AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTA 401
R+++ A + PK + + S G +SP+L GCLSPR + EL +
Sbjct: 227 RMRRHLQRKAWIAHFEKPKTSPNTLEPSTTG------LSPYLKFGCLSPRLFYHELARVY 280
Query: 402 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+K G +LLWR+FF
Sbjct: 281 AEYRDHAKPPVSLHG-----------QLLWREFF 303
>gi|424659531|ref|ZP_18096780.1| cryptochrome DASH [Vibrio cholerae HE-16]
gi|408052086|gb|EKG87145.1| cryptochrome DASH [Vibrio cholerae HE-16]
Length = 462
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 34/314 (10%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 179 P---IEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKE 225
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 226 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 269
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 TYWIFFELLWREYF 283
>gi|422923119|ref|ZP_16956282.1| cryptochrome DASH [Vibrio cholerae BJG-01]
gi|341644424|gb|EGS68634.1| cryptochrome DASH [Vibrio cholerae BJG-01]
Length = 461
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 135/320 (42%), Gaps = 47/320 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR------KTIEALD 295
I + +L LPF L +P+ + FR++V+ + + + + ++
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSAPMGYPRVLPPIE 180
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
Q LP G V +P ++ GGE L + + +
Sbjct: 181 QGWQLPLMGIVT----------------------EPNHSAFVGGEQAGLTHCQNYFSSML 218
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 219 PSRYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--- 267
Query: 416 GSSGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 -----STYWIFFELLWREYF 282
>gi|380797951|gb|AFE70851.1| cryptochrome-2 isoform 1, partial [Macaca mulatta]
Length = 579
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 9 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 64 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY L+ + G+ P Y F+ + +E+ K T + ++
Sbjct: 124 EAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 183
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 184 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 236
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 237 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 284
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 285 STPPLS-------LFGQLLWREFF 301
>gi|262191004|ref|ZP_06049214.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae CT 5369-93]
gi|262033105|gb|EEY51633.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae CT 5369-93]
Length = 461
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQTIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLMDI----------VTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
gi|402893708|ref|XP_003910033.1| PREDICTED: cryptochrome-2 [Papio anubis]
gi|355566579|gb|EHH22958.1| Cryptochrome-2 [Macaca mulatta]
gi|355752191|gb|EHH56311.1| Cryptochrome-2 [Macaca fascicularis]
Length = 593
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY L+ + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>gi|384424820|ref|YP_005634178.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio
cholerae LMA3984-4]
gi|327484373|gb|AEA78780.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio
cholerae LMA3984-4]
Length = 462
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 34/314 (10%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 179 P---IEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKE 225
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 226 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAILQRYEAVHGA----ND--------S 269
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 TYWIFFELLWREYF 283
>gi|254224954|ref|ZP_04918569.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
gi|125622642|gb|EAZ50961.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
Length = 461
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLMDI----------VTEPNHSAFIGGEQAGLTHCQHYFSSMLPSCYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
Length = 474
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 144/315 (45%), Gaps = 42/315 (13%)
Query: 124 RASIVWF-RNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
RA ++W+ R DLR+ DN +L A VLPVY D +D ++ + G
Sbjct: 4 RAPVIWWIRRDLRLCDNPALTAAAESGAPVLPVYILDEQDEALGAAPKFRLG-------- 55
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+ + L GS L++R GK VL +L + GA AV+ R ++ + +I+
Sbjct: 56 LGLDHFGQELAKAGSCLILRRGKALRVLQDLIEETGAGAVHWSRLYDPQAIRRDSEIKQT 115
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+K++G+ VK G L+ + K G M Y F + V+ ++ D L LP+
Sbjct: 116 LKEQGVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDV-------DSL--LPA 166
Query: 303 RGDV-EPGDIPSLLDLG-LSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
G + P + P+ DL +AAM +G A + GET AL+RL+ F E K
Sbjct: 167 PGKIAAPDNWPASEDLADWRMAAAMRRGADVVARYCRVGETAALERLETF-LEDSVDAYK 225
Query: 361 GNKDGNHDSIYGA-NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+D Y A + + +S LA G +SP M+ + SAA E GS G
Sbjct: 226 ARRD------YPAEDATSGLSENLAWGEISPHRMWHQ-------GSAAM-----ERGSQG 267
Query: 420 AGSNWLMFELLWRDF 434
A + E++WR+F
Sbjct: 268 AEH--FLKEIVWREF 280
>gi|346326523|gb|EGX96119.1| cryptochrome DASH [Cordyceps militaris CM01]
Length = 657
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 145/362 (40%), Gaps = 57/362 (15%)
Query: 124 RASIVWFRNDLRVHDNESLN----TANNESVSVLPVYCFDPRD----------------Y 163
R + R DLR+ DN + T+++ +LPV P
Sbjct: 5 RVLVYLLRRDLRISDNPVFHRLTSTSDHGFTHLLPVVVLPPDQIETSGFLNPAQTSPFPL 64
Query: 164 GKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI----- 217
KS G F + GP+RA FL E+V DL+ L +R S L+VR+G P ++ + + +
Sbjct: 65 AKSKVGNFWRCGPHRAKFLAEAVWDLKDTLVSRHSGLIVRIGTPADIVRGIIQHLQTSGN 124
Query: 218 -GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD-DLPFKLGEMPTNY 275
AV+ +V +E + + I I+ Y D DL E+P +
Sbjct: 125 AAVSAVWMTDDVPIEERQQQADISVVCDRANIDFTLIPDEKYYIDDRDLDIATQELPDVF 184
Query: 276 GGFREKVKGVEIRKTIEALDQ---LKGLPSRGDVEPGDIP--------SLLDLGLSQSA- 323
+R+ + + + D L P + P IP S L + A
Sbjct: 185 TTYRKAQEPLREKPRDVYPDSKSPLPPFPPEALIPPQSIPFQVPDNLDSFLKCLVKPLAF 244
Query: 324 -----AMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCK 378
+A+ GGE A+ RL+ A ++G + GA+FS K
Sbjct: 245 ELPNPPAPPPDAQSAHPFLGGEQSAMNRLQHLVKSGAASSYSDTRNG----LLGADFSTK 300
Query: 379 ISPWLAMGCLSPRSMFDELKK----TATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
+S +L +GCL+ R + EL K T + A+ + GE+ + A + ELLWRD+
Sbjct: 301 LSAFLCLGCLTARQVHGELVKFEDGTDSQYQEATGYGQGENNGTKA----IRLELLWRDY 356
Query: 435 FR 436
R
Sbjct: 357 MR 358
>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2 isoform 1 [Sus scrofa]
Length = 594
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 24 SSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 78
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L + G + + + + I K
Sbjct: 79 LEDLDTSLRKLNSRLFVVRGQPADVFPALFQEWGVTRLTFEYDSEPFGKERDAAIMKMAK 138
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 139 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQALISRMELPKKPVGSVTSQQMESC 198
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 199 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 251
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 252 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 299
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 300 STPPLS-------LFGQLLWREFF 316
>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
Length = 533
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 143/336 (42%), Gaps = 56/336 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN------TANNESVSVLPVYCFDPRDYGKSSSGFDKTGP 175
+ A++V WFR LRVHDN +L A E V P++ DP + + G
Sbjct: 4 KHATLVHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDP-----GILDWMQVGA 58
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL + L+ S L V GKP V + K+ + + ++ ++
Sbjct: 59 NRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEPYALQR 118
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EGI+V T+Y+ + + K +G+ P Y F V +++ K +E
Sbjct: 119 DAAVQKLAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVDQLKVPKVLELP 178
Query: 295 DQL--KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
++L K LP + +VE D + L Q + P N GGETE L+R+
Sbjct: 179 EKLAKKALPPKDEVEQQDDNAYDCPTLEQLVKRPEDLGP--NKFPGGETEGLRRM----- 231
Query: 353 EYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELKK 399
K+ D ++ A F + +SP+L GCLS R +LK
Sbjct: 232 ----------KESLRDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFHQQLKA 281
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S S + S G +LLWR+F+
Sbjct: 282 ILKRQSKHS-----QPPVSLIG------QLLWREFY 306
>gi|452822749|gb|EME29765.1| deoxyribodipyrimidine photo-lyase [Galdieria sulphuraria]
Length = 545
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 134/303 (44%), Gaps = 24/303 (7%)
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
+ G I+ +IVWFR LR+HDN +L A + + P++ DP DK G
Sbjct: 46 DTGTHIKGPTIVWFRKSLRLHDNPTLQRAVQLASELFPLFILDPYYINP-----DKIGFQ 100
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R F++E + DL +L+ S L+V G+P VL K + ++ +
Sbjct: 101 RFRFMLECMKDLDHSLRKYQSKLLVIYGEPVNVLENCCKTWKCSYLCFEKDSDIYSRNRD 160
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMP----TNYGGFREKV----KGVEI 287
EK+ MK G++ G TLY LD L KL G P T++ F E++ K +E
Sbjct: 161 EKVLQRMKGLGVQCFVESGHTLYDLDMLVAKLNGNSPPTQMTSFLKFIEQIGPPPKPIET 220
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL 347
+ I L K L S + +P + ++ +P +GGE++AL+R+
Sbjct: 221 VRNIPPLR--KELLS--SISISKVPEIEEI-----PGYELITEPTPCPFQGGESKALERM 271
Query: 348 KKFAAEYQAQ-PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
++ Q + + +K + +SP++ G LS R F ELK+ S S
Sbjct: 272 QQALNREQGKWIVRFSKPHTSPVSLDPPSTTVLSPYIKCGALSVRLFFWELKRVEDSFSV 331
Query: 407 ASK 409
+K
Sbjct: 332 KTK 334
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 143/318 (44%), Gaps = 50/318 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFR DLR+ DN +L TA +E V+PVY +P + +G G +A +L S++
Sbjct: 8 ILWFRKDLRLDDNAALATAADEGRRVIPVYIREP-----AEAGTGPLGAAQAWWLHHSLA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L+ GS L +R G VL +L GA +VY +R + ++ I+A + ++
Sbjct: 63 ALARSLEEIGSRLTLRSGPAGQVLDQLIDETGAASVYWNRRYDPPGIAIDKAIKARLTED 122
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
G+ ++ F G L+ L G Y F + ++ E R+ A L PS D
Sbjct: 123 GLVIRTFAGQILHEPTRLTTGSGTNFRVYTPFWKALESSGEPREPAPAPASLNAPPSWPD 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEYQAQ---P 358
EP D +LL + +A S+ +P GE AL+RL F A Y++ P
Sbjct: 183 SEPLDSWALLPTKPNWAAEFSEIWQP-------GEAGALERLDTFIENGLAGYRSLRDFP 235
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+ N + +SP LAMG +SP ++ + A
Sbjct: 236 ARPN-------------TSMLSPHLAMGEISPARIWHATRGLAGRF-------------- 268
Query: 419 GAGSNWLMF--ELLWRDF 434
A + + F E++WRDF
Sbjct: 269 -ASEDIIHFRKEVVWRDF 285
>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
Length = 435
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + ++ WFR DLR+ DN L A E +VLP++ FD + D R +F+
Sbjct: 1 MSKVTLFWFRRDLRLDDNAGLYHALKERSAVLPLFIFD----SEILENLDDPADARVTFI 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
E + D+++ L A+ SDL+VR GKP VL L+ + +A+YA+ + K +EK+ A
Sbjct: 57 YEQIQDMKQQLNAKKSDLIVRHGKPLEVLKTLSDEMAVEAIYANHDYEPAARKRDEKVAA 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV 282
GIE F L+ D++ + T Y +R KV
Sbjct: 117 WAAKAGIEFLTFKDQCLFEKDEILTDARKPYTVYTPYRNKV 157
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 145/315 (46%), Gaps = 27/315 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
I WFR DLR+ DN +L+ A S V+P++ D + +TG R +F+I ++
Sbjct: 4 IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILD-----DAILHAPRTGMARVAFMIAAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ARGS LVVR G+P VL +L A GA V +R+ + + ++ IEA ++D
Sbjct: 59 RDLDASLRARGSRLVVRRGRPSDVLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRD 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRK--TIEALDQLKGLPS 302
+ + + DD+ G T Y +R + + VE R+ + A + P
Sbjct: 119 LNVATFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPV 178
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
V IP DL +S + PA GGET RL F G
Sbjct: 179 PDGVADLPIPDNPDLDVSVIQRI-----PA-----GGETTGAARLAAFLDPRATHGIAGY 228
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
DG ++ + ++SP+L GC++PR+ L+ + A + D E ++ S
Sbjct: 229 ADGR--NLLAEPATSRLSPYLRFGCVAPRA---ALRAALNLLDRAGEEQDAECAATLTRS 283
Query: 423 --NWLMFELLWRDFF 435
W+ EL WRDF+
Sbjct: 284 IETWIG-ELAWRDFY 297
>gi|153828573|ref|ZP_01981240.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
gi|148875968|gb|EDL74103.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
Length = 461
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 136/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQAAQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLMDIV----------AEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
Length = 433
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 150/325 (46%), Gaps = 53/325 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFL 181
+++WFR LR+HDN SL A + S +V PV+ DP D S G + G R FL
Sbjct: 2 ALLWFRKGLRLHDNPSLEAACHGSRNVYPVFVLDPWFLAPDPSAPSPGSARVGINRIQFL 61
Query: 182 IESVSDLRKNLQARGSDLVVRVGKP-ETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ES+ DL +NL +RGS L++ G P + + +L + R+ KI+
Sbjct: 62 LESLQDLDRNLSSRGSKLLLVHGNPIQWRIRKLCFEFDTEPYALDRDA---------KIK 112
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
KD+GIE+ T+++ D L K G+ P + F + + + T +
Sbjct: 113 EHAKDKGIELHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCKNL----VPATKPIGNGPSS 168
Query: 300 LPSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
+P GD ++ +P+L +LG + + P +GGET L RL +K+
Sbjct: 169 IPPTGDLHGIKVVPVPTLEELGYTD---FHEDFSP----FRGGETVGLTRLEDSLANEKW 221
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
E++ PKG+ + + + +SP+L GCLS R + +K+ +
Sbjct: 222 VCEFEK--PKGDP-----TAFIKPATTVLSPYLKFGCLSSRLFYSRVKEVYSR------- 267
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+S +S S L +LLWR+FF
Sbjct: 268 --AKSFTSPPVS--LEAQLLWREFF 288
>gi|422910818|ref|ZP_16945448.1| cryptochrome DASH [Vibrio cholerae HE-09]
gi|341632989|gb|EGS57838.1| cryptochrome DASH [Vibrio cholerae HE-09]
Length = 462
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 136/314 (43%), Gaps = 34/314 (10%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQAAQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 179 P---IEQGWQLPLMDIV----------TEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKE 225
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 226 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 269
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 270 TYWIFFELLWREYF 283
>gi|429886464|ref|ZP_19368021.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae PS15]
gi|429226656|gb|EKY32741.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae PS15]
Length = 461
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 137/320 (42%), Gaps = 47/320 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR------KTIEALD 295
I + +L LPF L +P+ + FR++V+ + + + + L+
Sbjct: 123 DFSSLHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSAPMGYPRVLPPLE 180
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
Q LP L+D+ +P ++ GGE L + + +
Sbjct: 181 QGWQLP------------LMDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSLL 218
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 219 PSRYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--- 267
Query: 416 GSSGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 -----STYWIFFELLWREYF 282
>gi|427711391|ref|YP_007060015.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
gi|427375520|gb|AFY59472.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
Length = 486
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 12/218 (5%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR+ D+ L A ++ V+ ++CFDP+ G + R ++L+ +
Sbjct: 17 LLWHRRDLRIQDHLGLAAAREKTAKVVGLFCFDPKILGG-----EDIAAVRVAYLVGCLE 71
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL + GS L++ G+P TV+ +LA+A+ A A+Y H +V ++ + A+
Sbjct: 72 DLAQQYHQAGSQLLILQGEPTTVIPKLAQALKAQALYWHCDVEPYAQARDKAVAQALAKA 131
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG-D 305
GI V+ FW L + + G + T Y F + + + + L Q +GL S+ D
Sbjct: 132 GISVQTFWDQLLVAPEAIRTGSGAIYTVYSPFWKNWQQHPKAQPVPTLHQAQGLTSQELD 191
Query: 306 VEPGD----IPSLLDLGLS--QSAAMSQGGKPAANSMK 337
+ + +P+ DLG + Q ++ G PA ++
Sbjct: 192 IAQQNGMILLPTTQDLGFTWDQELVLAPGVPPAQARLE 229
>gi|118572251|sp|Q8QG60.2|CRY2_CHICK RecName: Full=Cryptochrome-2
Length = 582
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 142/323 (43%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A + S+ +Y DP S+ G + R FL++S+
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGIN-----RWRFLLQSL 68
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K G + + + + I K+
Sbjct: 69 EDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKE 128
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSR 303
G+EV TLY+LD + + P Y F+ + +E+ +K + ++ + +
Sbjct: 129 AGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188
Query: 304 GDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
D++ +PSL +LG + G PA +GGETEAL RL K + A
Sbjct: 189 VDIQENHDDVYGVPSLEELGFP-----TDGLAPAV--WQGGETEALARLDKHLERKAWVA 241
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
Y+ P+ N + S G +SP+L GCLS R + L + + K N
Sbjct: 242 NYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV----KRNS 289
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 290 TPPLS-------LYGQLLWREFF 305
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 142/314 (45%), Gaps = 35/314 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILER-----DDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPTTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
D E ++P+L +LG + + + GE A RL++F Q
Sbjct: 179 DKLTETINLPTLENLGFTWQNPL---------PLTPGEKAAHSRLEEFC---QGVINNYQ 226
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D N + G + ++S L G + R+++ + + A N +
Sbjct: 227 EDRNFPAFDGTS---RLSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITWQQ---- 279
Query: 423 NWLMFELLWRDFFR 436
EL WR+F++
Sbjct: 280 -----ELAWREFYQ 288
>gi|443316924|ref|ZP_21046350.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
gi|442783454|gb|ELR93368.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
Length = 478
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 140/318 (44%), Gaps = 37/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+HDN L A S V V+C DP + D P R ++L+ ++
Sbjct: 6 LFWHRRDLRLHDNLGLAAARARSPQVTGVFCLDPGILHR-----DDVAPVRVAYLMNCLA 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ A G +L++ G P VL LA+ I A+Y +R+V + + AA K++
Sbjct: 61 ALQGRYAAAGGELLILQGSPAQVLPNLAQVIAVTALYWNRDVEPYARDRDTHVAAACKEQ 120
Query: 247 GIEVK-YFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPSRG 304
GIE+K FW L + G T YG F R + +E + +GL S
Sbjct: 121 GIEIKTTFWDQLLCAPGAVLTGTGSPYTVYGPFWRNWCTQAKAPPELEPTN-FEGL-SPA 178
Query: 305 DVEPGD------IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+ E + +PS DLG S + ++ GE ALQ+L+ F ++ QA
Sbjct: 179 ERERANAAGAMPLPSTTDLGFSWDQPL---------PVEPGEGAALQQLEAFCSQDQA-- 227
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
G D + + S ++S L G + R+++ A + A + E+ S
Sbjct: 228 -IGAYDEQRNFPFALGTS-RLSAALKFGVIGIRTVW------AAAAEAMERCRSDETRQS 279
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W EL WR+F++
Sbjct: 280 --VTTWQQ-ELAWREFYQ 294
>gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 439
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 137/308 (44%), Gaps = 37/308 (12%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WF+ DLR+ DN +L +++ + ++L VY + +G GP R FL ES+ L
Sbjct: 12 WFQRDLRLADNPAL-SSHVAADTLLCVYLMPKTGPWCNVTGM---GPQRDRFLRESLQAL 67
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
R L G DL+V G PE VL +L V A + E + E+++ + G+
Sbjct: 68 RDELNRLGQDLLVLEGSPELVLPDLVSRFDITEVSACTAPGYYERLTYERLQRRL---GV 124
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
+ G+TL+ D LP L + P + FR++V+ + I T A + + LP +
Sbjct: 125 PFELHRGNTLFTEDQLPTGLADFPATFTPFRKQVEPLTI--TPPAAEPVT-LPPPPAAQF 181
Query: 309 GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHD 368
IP +Q A + GG L+R+++F + + + +
Sbjct: 182 DAIPP------------AQALPSPALPIPGGRAAGLRRVRQFIFDERR---IVSYKETRN 226
Query: 369 SIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 428
+ G + S +SPWLA G LS R + E+ + A + WL FE
Sbjct: 227 CLDGLDGSSSLSPWLANGNLSAREVAHEIFRFEREQLA------------NESTYWLFFE 274
Query: 429 LLWRDFFR 436
LLWR+FF+
Sbjct: 275 LLWREFFQ 282
>gi|229520286|ref|ZP_04409712.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TM 11079-80]
gi|419837545|ref|ZP_14360983.1| cryptochrome DASH [Vibrio cholerae HC-46B1]
gi|421344689|ref|ZP_15795092.1| cryptochrome DASH [Vibrio cholerae HC-43B1]
gi|422307766|ref|ZP_16394921.1| cryptochrome, DASH family protein [Vibrio cholerae CP1035(8)]
gi|423735495|ref|ZP_17708692.1| cryptochrome, DASH family protein [Vibrio cholerae HC-41B1]
gi|424009837|ref|ZP_17752774.1| cryptochrome DASH [Vibrio cholerae HC-44C1]
gi|229342652|gb|EEO07644.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TM 11079-80]
gi|395940769|gb|EJH51450.1| cryptochrome DASH [Vibrio cholerae HC-43B1]
gi|408618970|gb|EKK92017.1| cryptochrome, DASH family protein [Vibrio cholerae CP1035(8)]
gi|408629871|gb|EKL02530.1| cryptochrome, DASH family protein [Vibrio cholerae HC-41B1]
gi|408856093|gb|EKL95788.1| cryptochrome DASH [Vibrio cholerae HC-46B1]
gi|408863902|gb|EKM03373.1| cryptochrome DASH [Vibrio cholerae HC-44C1]
Length = 461
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 136/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + L
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRVL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVEAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G LLD+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLLDI----------VAEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 144/318 (45%), Gaps = 51/318 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIES 184
+IVWFR DLR+HD+ L A V+PV+ DP G+ +SG R +F+++
Sbjct: 6 AIVWFRRDLRLHDHPPLVRALAAHARVVPVFVLDPAIVRGRFASG------ARTAFMLDC 59
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ +L +L+ RGS LVVR G+PE L LA+ IGA AV+ + + + + ++ +A+
Sbjct: 60 LRELDADLRERGSGLVVREGRPERELPALAREIGAAAVHWASDATPYAIARDRRVRSALA 119
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG-------FREKVKGVEIRKTIEALDQL 297
V G + D +G T GG F + +E R L
Sbjct: 120 AAQPAVAAVPGPGNFVAD-----VGRPRTRAGGPYTVFTPFHRAWQQLERRTVHRTPAVL 174
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
LP+ + G +PSL LGL+ + P A +++ GE A + +++ +
Sbjct: 175 PPLPA--GLRRGALPSLAALGLTDELS------PTARAVEPGERAARRAAERWLDGHL-- 224
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
G+ +HD + G + +SP+L GCLS R E ++ A
Sbjct: 225 ---GDYARDHDRLAGG--TSALSPYLHHGCLSAR----ECEQRAVR-------------R 262
Query: 418 SGAGSNWLMFELLWRDFF 435
G G+ + +L WRDF+
Sbjct: 263 GGEGAEAFVRQLAWRDFY 280
>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
Length = 569
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 139/322 (43%), Gaps = 44/322 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L A + V VY DP SS G + R FL++S+
Sbjct: 1 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQSLE 55
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL +L+ S L V G+P V L K G + + + + I K+
Sbjct: 56 DLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEA 115
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRG 304
G+EV TLY LD + G+ P Y F+ + +E+ +K A+ + R
Sbjct: 116 GVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSSRMESCRA 175
Query: 305 DVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAAE 353
+++ +PSL +LG ++G PA +GGETEAL RL K + A
Sbjct: 176 EIQKNHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWVAN 228
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 229 YER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRNST 276
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 277 PPLS-------LFGQLLWREFF 291
>gi|421354490|ref|ZP_15804822.1| cryptochrome DASH [Vibrio cholerae HE-45]
gi|395953615|gb|EJH64228.1| cryptochrome DASH [Vibrio cholerae HE-45]
Length = 461
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 136/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + L
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRVL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVEAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G LLD+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLLDI----------VAEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|378731024|gb|EHY57483.1| deoxyribodipyrimidine photo-lyase [Exophiala dermatitidis
NIH/UT8656]
Length = 669
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 154/366 (42%), Gaps = 58/366 (15%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNES-------VSVLPVYCF------------DPRDY 163
+R + R DLR+ DN + S VLP+Y DP
Sbjct: 4 QRVLVYLLRRDLRLCDNPVFYEIHKLSKQASPPFTHVLPIYVIPAQQVETSGFLPDPESI 63
Query: 164 -----GKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVEL---- 213
+S G F + GP+RA FL ESV L+++L+ GS L++RVG+ + ++
Sbjct: 64 SPFPEARSEVGKFWRCGPHRAVFLAESVWSLKQDLERVGSGLLIRVGQLGQIAQDVFDQF 123
Query: 214 ---AKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFKL 268
A AV+ E +E + E ++ A + G+E K W Y +DD +P K
Sbjct: 124 RTQASDAIVSAVWMTSEEGVEEKREEREVRKAAQKAGVEFK-LWLDEKYFIDDRDVPLKK 182
Query: 269 -GEMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPSRGDVEPG--DIPSLLDLGLSQSA 323
++P + +R+ + + RK + L LPS +P IP + G+ +
Sbjct: 183 PSDLPDVFTAYRKSAEPLREAPRKPVSTPPSLPALPSFLPSQPAPFAIPDSFE-GMKSAL 241
Query: 324 AMSQGGKP-------------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 370
+P +A+ +GG E L R++ + K ++G +
Sbjct: 242 LKPLNNQPLLADPPAFPPGVKSAHPFRGGSQEGLHRIQHLLKQGVMTRYKDTRNG----L 297
Query: 371 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 430
G +FS K+S WLA+GC++ R + L + +G AG+ + FELL
Sbjct: 298 LGTDFSTKLSAWLALGCITARQVHARLVDYEEGYDDQYQGTEGYGKGENAGTAAVRFELL 357
Query: 431 WRDFFR 436
WRD+ R
Sbjct: 358 WRDYMR 363
>gi|194332801|ref|NP_001123706.1| uncharacterized protein LOC100170456 [Xenopus (Silurana)
tropicalis]
gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 142/319 (44%), Gaps = 45/319 (14%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FR LR+HDN +L TA S V PVY D R++ SSS G R +F ++S+ DL
Sbjct: 9 FRKGLRLHDNPTLVTALETSDVVYPVYILD-RNFMTSSSVI---GSKRWNFFLQSIEDLH 64
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
NLQ S L V G E VL E + V E+ +E+I A ++ G E
Sbjct: 65 CNLQKLNSCLFVIQGDYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIRAMGQELGFE 124
Query: 250 VKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV----EIRKTIEALDQLKGL-PSR 303
V TLY + L G+ P Y F + + + + I + D +K + P++
Sbjct: 125 VVSMVAHTLYDIKKILALNCGKPPLTYKNFLRVLSMLGNPDKPARQITSEDFIKCITPTK 184
Query: 304 GDVEP-GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK------FAAEYQA 356
E IP DLG+S K + GGE+EAL RL++ + A ++
Sbjct: 185 LAAEEYYRIPKPEDLGIS---------KDCPTNWIGGESEALSRLEQHLEKQGWVANFKK 235
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
P+ + S G +SP+ ++GCLS R F L ++I A SK N
Sbjct: 236 --PQTIPNSLLPSTTG------LSPYFSLGCLSVRVFFHRL----SNIYAQSK-NHSLPP 282
Query: 417 SSGAGSNWLMFELLWRDFF 435
S G +LLWR+FF
Sbjct: 283 VSLQG------QLLWREFF 295
>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 138/322 (42%), Gaps = 38/322 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFLI 182
+VWFR LRVHDN +L+ A + V PV+ DPR D S G G R FL+
Sbjct: 16 LVWFRKGLRVHDNPALDAARRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVARVRFLL 75
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
ES+ DL L+ GS L+V + + + K + + + ++++
Sbjct: 76 ESLLDLDARLRCLGSRLLVLRARDDVSDAVCAALKDWNIGKLCFESDTEPYALARDKRVT 135
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
GIEV TL+ ++ K G P Y F G + +E L
Sbjct: 136 DFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSF-VATAGEPPKPVMEEYSVLPP 194
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAAE 353
+ G E +P L +LG +SQ P +GGETEAL+R+ K++ A+
Sbjct: 195 IGDTGGYELLPVPKLEELGYGD---LSQEYIP---PFRGGETEALKRMRESLQDKEWVAK 248
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
++ PKG+ S + + +SP+L GCLS R + ++ S +K
Sbjct: 249 FEK--PKGDP-----SAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTHTK---- 297
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
S AG +LLWRDFF
Sbjct: 298 -PPVSLAG------QLLWRDFF 312
>gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
Pf0-1]
gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
Pf0-1]
Length = 488
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 142/320 (44%), Gaps = 46/320 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR HDN +L A SV VY P+ + + P + F + ++
Sbjct: 10 LIWLRSDLRQHDNTALAAAAERGPSV-AVYLLSPQQWQEHDD-----APCKIDFWLRNLH 63
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L K+L L++R + VL+EL + + +AV+ + E +E + + + A
Sbjct: 64 KLSKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDAAVAKA 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQ 296
++ EGI + LD L FK G + T G + + KV + +++ +L Q
Sbjct: 124 LQAEGITFHSY-------LDQLLFKPGSVLTRTGTYFQVFSQFRKVCYEHLHRSMPSLKQ 176
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
G S ++ +P ++ G A + PA GETEA +RL F A+ Q
Sbjct: 177 APGKQSALNIASDPVPEAIE-GFPTPGASLRALWPA------GETEARRRLDTF-ADAQI 228
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
K +D + ++S +LA G +SPR + AA + N GE
Sbjct: 229 DYYKSERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQGEFE 273
Query: 417 SSGAGSNWLMFELLWRDFFR 436
S G+ + ELLWR+F++
Sbjct: 274 SGKVGAVTWINELLWREFYK 293
>gi|398404229|ref|XP_003853581.1| hypothetical protein MYCGRDRAFT_21368, partial [Zymoseptoria
tritici IPO323]
gi|339473463|gb|EGP88557.1| hypothetical protein MYCGRDRAFT_21368 [Zymoseptoria tritici IPO323]
Length = 570
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 152/367 (41%), Gaps = 61/367 (16%)
Query: 124 RASIVWFRNDLRVHDN---ESLNTANNES----VSVLPVYCF-----------------D 159
R I R DLR+ DN L N++S +LP+Y F
Sbjct: 1 RVLIYLLRRDLRLADNPIFTELAHLNSQSQKPFTHLLPLYVFPANQLEISGFLSSDSEKS 60
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGK-PETVLVELAKAI 217
P +S+ GF + G RA F+ ESV DL+++LQ SDL++RVG + V L
Sbjct: 61 PYPEARSAVGGFWRCGKLRAKFMAESVWDLKQDLQKDQSDLILRVGTVKDAVQAVLDGYR 120
Query: 218 GAD-----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLY----HLDDLPFKL 268
G D V+ E S +E E+ ++ ++ +G E + W Y H DLPFK
Sbjct: 121 GRDDAEVHGVWMTGEKSWEEQVEEQDVKKMVEKDGKEFQ-LWNDEKYFLTIHSRDLPFKD 179
Query: 269 G-EMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD-----VEPGDIPSLL------- 315
E+ + FR+ V+ + + L K LPS D +P IP L
Sbjct: 180 ARELNDVFTSFRKTVEPLR-EAPRQELPLAKKLPSLPDFIPEQAKPFAIPHSLKDTITAL 238
Query: 316 ------DLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDS 369
D L + + +G + +A+ GG L R+K K ++G
Sbjct: 239 NKPLDADQQLKNAPTLPEGAE-SAHPFVGGSKPGLDRIKHLIESGAMTSYKDTRNG---- 293
Query: 370 IYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFEL 429
+ G +FS K+S WLA+G ++ R + L K G G+ + FEL
Sbjct: 294 LLGLDFSTKLSAWLALGSITARQVHWRLVDFEDGKGDVGKNAQGYGKGENKGTAAVRFEL 353
Query: 430 LWRDFFR 436
LWRD+ R
Sbjct: 354 LWRDYMR 360
>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
Length = 582
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 141/323 (43%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A + S+ +Y DP S+ G + R FL++S+
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGIN-----RWRFLLQSL 68
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K G + + + + I K+
Sbjct: 69 EDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKE 128
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSR 303
G+EV TLY LD + + P Y F+ + +E+ +K + ++ + +
Sbjct: 129 AGVEVVIENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188
Query: 304 GDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
D++ +PSL +LG + G PA +GGETEAL RL K + A
Sbjct: 189 VDIQENHDDVYGVPSLEELGFP-----TDGLAPAV--WQGGETEALARLDKHLERKAWVA 241
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
Y+ P+ N + S G +SP+L GCLS R + L + + K N
Sbjct: 242 NYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV----KRNS 289
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 290 TPPLS-------LYGQLLWREFF 305
>gi|424591481|ref|ZP_18030908.1| cryptochrome DASH [Vibrio cholerae CP1037(10)]
gi|408031556|gb|EKG68172.1| cryptochrome DASH [Vibrio cholerae CP1037(10)]
Length = 461
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 133/314 (42%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITQFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + +
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSAPMGY-------- 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
P +P + Q M +P ++ GGE L + + + K
Sbjct: 173 ------PRVLPPMYQGW--QLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2050
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 141/322 (43%), Gaps = 42/322 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
ASI WFR LR+HDN +L A + + PV+ DP + KS G R FLI +
Sbjct: 4 ASIHWFRKGLRLHDNPALMAALRDCKELYPVFILDPHLHNKS------VGINRCRFLIGA 57
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V GKPE V +L + + + + + +
Sbjct: 58 LRDLDLSLRNLNSRLFVVRGKPEEVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVTTLAE 117
Query: 245 DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV-EIRKTIEA--LDQLKGL 300
+ G++V Y TLY + L G+ P Y + VK + ++ I A +D LKG+
Sbjct: 118 ESGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLGPPKRPISAPSMDDLKGV 177
Query: 301 --PSRGDVEPG-DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL----KKFAAE 353
P D E IP+L DLG G P GGE EAL+RL KK +
Sbjct: 178 STPCLEDHEKKYGIPTLEDLG------HDPAGLP-EEKFPGGEQEALRRLEDQMKKTSWV 230
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ P+ + + S + +SP++ GCLS R+ + L S G
Sbjct: 231 CNFEKPQTSPNSLSPS------TTVLSPYVTFGCLSARTFWWRL----------SDVYSG 274
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
+ S+ S L +LLWR+FF
Sbjct: 275 KKHSAPPVS--LHGQLLWREFF 294
>gi|406861424|gb|EKD14478.1| DASH family cryptochrome [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 660
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 166/379 (43%), Gaps = 92/379 (24%)
Query: 127 IVWFRNDLRVHDNESLN-----TANNESVSVLPVYCFDPRD---------------YGKS 166
I R DLR+ DN L+ T + +LP+Y F + Y ++
Sbjct: 8 IYLMRRDLRISDNPILHSLATTTKQHGFTHLLPLYVFSAQQLEVKGFIADSDIKSPYPEA 67
Query: 167 SS---GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA------I 217
S GF +TGP+R +FL E + D+++ L+ GS L +RVG V+ +L +
Sbjct: 68 RSPVGGFWRTGPHRVTFLAECIWDVKEGLEKLGSGLCIRVGTVGAVVDDLLSKFESKGEV 127
Query: 218 GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD--DLPF----KLGEM 271
AV+ E +E E +++ A ++ G++ + W Y +D DLP +L ++
Sbjct: 128 KVGAVWMVGEEGVEEAHEESQVKKACREAGVQFQ-LWTDEKYLIDDRDLPLPNIDELSDI 186
Query: 272 PTNYGGFREKVKGVEIRKTIEAL-----DQLKGLPSRGDV------------EPGDIPSL 314
T+Y RKT+E L D L +P++G + EP IP
Sbjct: 187 FTSY------------RKTVEPLRDHPRDALP-VPTKGALPPFPAESIPDQREPFTIPGS 233
Query: 315 LD------------LGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
LD L ++ G +A+ GGE++A RL+ KGN
Sbjct: 234 LDDLQKALLKPLNAEDLVRNPPPYPAGTTSAHPFLGGESQAQDRLEYLIT-------KGN 286
Query: 363 KDGNH---DSIYGANFSCKISPWLAMGCLSPRSMFDELK--KTATSISAASKWNDGESGS 417
H + + G +FS K+S +L++GC++ R + L + T+ + AS G+ +
Sbjct: 287 VVNYHSTRNGLLGHDFSTKLSAYLSLGCITSRQIHASLLAFENGTNAAYASVPEYGKGQN 346
Query: 418 SGAGSNWLMFELLWRDFFR 436
G S + FELLWRD+ R
Sbjct: 347 DGTKS--IRFELLWRDYMR 363
>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
Length = 616
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 143/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K+ +EI T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTE------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASTTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
Length = 484
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 138/314 (43%), Gaps = 43/314 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR+ DN +L A V+ VY D D G +SG G R +L S+
Sbjct: 14 TLLWFRRDLRLADNPALTAAVRRGRPVVAVYILDDEDAGDWASG----GASR-WWLHHSL 68
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ RGS L++R G VL L GA+AVY +R ++ I+A+++
Sbjct: 69 ERLAESLRGRGSRLILRRGAAAAVLDRLISETGAEAVYWNRCYEPWATARDQAIKASLRL 128
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV----EIRKTIEALDQLKGLP 301
G EV+ F S L ++ K+G + F + ++ + ++ T + + L+ P
Sbjct: 129 RGHEVRSFNASLLREPWEIASKVGGPYRVFTPFWKALRAMGDPGDLLPTPDRIPTLEVAP 188
Query: 302 SRGDVEPGDI-PSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
+ D++ + PS D AA K GE A QRL+ F P+
Sbjct: 189 ASDDIDAWALTPSKPDWAFGLRAA-----------WKPGEAAARQRLEAF---LDGAAPE 234
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
K N G N + ++SP L G + PR + W+ +G
Sbjct: 235 YAKRRN---FPGTNGTSRLSPHLHFGEIGPRQI----------------WHAASFHHTGM 275
Query: 421 GSNWLMFELLWRDF 434
++ + E+ WR+F
Sbjct: 276 ATDQFLSEIAWREF 289
>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
Length = 616
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 143/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K+ +EI T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTE------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASTTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|398974400|ref|ZP_10685027.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM25]
gi|398141602|gb|EJM30518.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM25]
Length = 488
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 142/320 (44%), Gaps = 46/320 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR HDN +L A +V VY P + + P + F + ++
Sbjct: 10 LIWLRSDLRQHDNTALAAAAERGPTV-AVYLLSPLQWQEHDDA-----PCKIDFWLRNLR 63
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K+L A L++R + VL+EL + + +AV+ + E +E + +E + A
Sbjct: 64 ELSKSLGALNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDEAVAEA 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQ 296
++ EGI + LD L FK G + T G + + KV + +++ +L Q
Sbjct: 124 LQAEGITFHSY-------LDQLLFKPGSVLTKTGTYFQVFSQFRKVCYERLHRSMPSLKQ 176
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
G S ++ +P ++ G + PA GE EA +RL F A+ Q
Sbjct: 177 APGKQSALNIASDPVPEAIE-GFPTPGESLRALWPA------GEAEARRRLDTF-ADAQI 228
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
K +D + ++S +LA G +SPR + AA + N GE
Sbjct: 229 DYYKSERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQGEFE 273
Query: 417 SSGAGSNWLMFELLWRDFFR 436
S G+ + ELLWR+F++
Sbjct: 274 SGKVGAVTWINELLWREFYK 293
>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
gi|357623166|gb|EHJ74426.1| cryptochrome 2 [Danaus plexippus]
Length = 742
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 137/324 (42%), Gaps = 33/324 (10%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRA 178
G + ++ WFR LR+HDN +L ++ + V+ DP S+ G +K
Sbjct: 24 GVPKEKHTVHWFRKGLRLHDNPALREGLVDATTFRCVFIIDPWFASSSNVGINK-----W 78
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
FL++ + DL KNL+ S L V G+P L +L + G A+ + +
Sbjct: 79 RFLLQCLEDLDKNLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHN 138
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV------EIRKTI 291
I ++ GI+V TLY LDD+ K G+ P Y F+ + + E ++
Sbjct: 139 IMTKCREVGIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQALIASMPPPPSAEPTISL 198
Query: 292 EALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
E L++ S E +P+L +LG ++G KP GGE EAL RL++
Sbjct: 199 ETLNRAVTPISDNHDERFGVPTLEELGFD-----TEGLKPPI--WIGGENEALLRLERHL 251
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
G +S+ + +SP+L GCLS R + +L + I
Sbjct: 252 ERKAWVASFGRPKMTPESLLSS--QTGLSPYLRFGCLSTRLFYYQLSELYKRIKQE---- 305
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S G ++LWR+FF
Sbjct: 306 --RPPLSLHG------QILWREFF 321
>gi|359456434|ref|ZP_09245595.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20495]
gi|358046549|dbj|GAA81844.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20495]
Length = 436
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 131/310 (42%), Gaps = 33/310 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN L+ ++ V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRIDDNPILSELATGQCALDIVFVINPHWFKNNNYQQKPYGVHKHQFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ L RG L V G+P ++L V + E + ++A ++
Sbjct: 66 ELQQTLIERGQTLHVLEGEPVSLLKARINEQNIHEVVYSEQFGLYEQRQINLLKAHCQN- 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
IE TL+ DLPF L E+P ++ FR+K + I T+ L +
Sbjct: 125 -IEFTGVLQDTLFKQSDLPFDLNELPKSFTPFRKKSEAANIPITLSMLPE---------- 173
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
G +P + L ++ ++ M GG A L A+Y +
Sbjct: 174 --GLLPQPITLCAAKPIELTDDNNAI---MHGGFKSAQAHL----AQYFSGLLPSTYKTT 224
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
+ + G N + K S WLA GC+S R ++ +++ + + W+
Sbjct: 225 RNELDGFNNTTKFSTWLAFGCVSARQVYKAVEEYE------------HKHIANESTYWIK 272
Query: 427 FELLWRDFFR 436
FELLWR++F+
Sbjct: 273 FELLWREYFK 282
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 33/237 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+TA S V+ ++C DP K D P R ++LI +
Sbjct: 6 LFWHRRDLRISDNIGLSTARQRSPHVVGIFCLDPDILEK-----DDVAPARVTYLIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++N Q GS L++ GKP + LA+++ A AV+ + +V +E++ A++++
Sbjct: 61 ELQQNYQQAGSQLLILKGKPSQAIPILAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEK 120
Query: 247 GIEVKYFWGSTLY------HLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
GI + FW L+ L P+K+ Y F + ++AL+ ++GL
Sbjct: 121 GIATEKFWDQLLHAPGKILTLSKEPYKV------YTPFWRNWSQELKKSPVQALEDVQGL 174
Query: 301 PSRG---DVEPG--DIPSLLDLG-LSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
+ E G D+P+ DLG L ++ M + GET A +RL++F
Sbjct: 175 NQQQISLAKEAGIIDLPTAKDLGYLWENPLM----------LNPGETAAKERLQEFC 221
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 145/314 (46%), Gaps = 35/314 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A + S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARDRSPKIIGVFCLDPAILER-----DDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPKTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ E ++P+L +LG + + + GE A RL++F Q
Sbjct: 179 EKLAETINLPTLENLGFTWQNPL---------PLAPGEKAARSRLEEFC---QGVINNYQ 226
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D N + G + ++S L G + R+++ + + A + +
Sbjct: 227 EDRNFPAFDGTS---RLSAALKFGAIGIRTIWTATLELLENCRAEE--------AKDSII 275
Query: 423 NWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 276 TWQQ-ELAWREFYQ 288
>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
gi|108871687|gb|EAT35912.1| AAEL011967-PA [Aedes aegypti]
Length = 820
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 132/316 (41%), Gaps = 33/316 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L ++VS V+ DP G S+ G +K +R FL++ +
Sbjct: 47 VHWFRKGLRLHDNPALREGLKDAVSFRCVFVIDPWFAGSSNVGINK---WR--FLLQCLE 101
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL +NL+ S L V G+P L +L K G + + + I K+
Sbjct: 102 DLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 161
Query: 247 GIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
GIEV TLY L+ + K G P Y F+ + ++ E L + +
Sbjct: 162 GIEVISAVSHTLYKLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATT 221
Query: 306 VEPGD------IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
+ D +P+L +LG ++G KP GGETEAL RL++
Sbjct: 222 PQYEDHDDKYGVPTLEELGFE-----TEGLKPPI--WVGGETEALARLERHLERKAWVAS 274
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
G S+ + +SP+L GCLS R + +L I A
Sbjct: 275 FGRPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKACP---------- 322
Query: 420 AGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 323 --PLSLHGQLLWREFF 336
>gi|372281898|ref|ZP_09517934.1| deoxyribodipyrimidine photo-lyase [Oceanicola sp. S124]
Length = 472
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 138/322 (42%), Gaps = 61/322 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++W R DLR D+E+L A V+PV+ D S +G R + +
Sbjct: 5 CLLWIRRDLRTTDHEALAAACKRGGPVIPVFIRD-----DSVTGLGAAPALRLDLGLAAF 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L+ +GS L++R G P VL +LAK GA AVY R +K + +++ A+++
Sbjct: 60 A---ARLKEKGSRLILRSGNPLEVLRDLAKETGAGAVYWQRLYDPAAIKRDSRVKTALRE 116
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+G++ + F G L+ + G Y F + V+G ++ + A
Sbjct: 117 DGLDAESFAGHLLFEPWTVETGQGGFYKVYSPFWKAVRGRDVGPALSA------------ 164
Query: 306 VEPGDIP---------SLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----A 352
P DIP +L D L SA M +G A + GE A Q+L FA A
Sbjct: 165 --PSDIPAPDAWPDSEALADWQL--SAPMRRGRAVVAAHVTPGEQAAQQQLALFARDRIA 220
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+Y+ Q +++G D +S L +G +SPR + + W
Sbjct: 221 DYKDQRDFPDREGTSD----------LSHHLTVGEISPRQCWH------------AGWRA 258
Query: 413 GESGSSGAGSNWLMFELLWRDF 434
E G GA + + E++WR+F
Sbjct: 259 LEEGKPGAET--FLKEVVWREF 278
>gi|358055721|dbj|GAA98066.1| hypothetical protein E5Q_04748 [Mixia osmundae IAM 14324]
Length = 601
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 151/354 (42%), Gaps = 77/354 (21%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVL-PVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
I WFR DLR+HD+ +L A + VL P +CFDPR + + GP R FL+ES+
Sbjct: 5 IYWFRTDLRLHDSPALQAALDLKPDVLFPTWCFDPRYVYEQ-----RVGPNRWKFLLESM 59
Query: 186 SDLRKNLQARG--SDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SD + S L V G P T+L L + + ++ ++ ++ +E
Sbjct: 60 SDTSAAITKVNPKSQLFVLRGHPTTILPALLRKWKISDIVWEKDDDPYTMERDKAVEKLA 119
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGV----------------- 285
KD G++V G TLY + + K P +YG F + ++G+
Sbjct: 120 KDAGVKVHVVHGHTLYDAEAIEAKTKGKPYVSYGPFVKILEGLPQPPRPIDAPSSLPNPG 179
Query: 286 -----EIRKTIEALDQLKGLPSRGDVEPGD---------------IPSLLDLGLSQSAAM 325
+++++ ++D K + + G+ +P++ +LG++++ +
Sbjct: 180 PTDLADLKRSEHSVDTWKKNDNNAENRDGEDKIYASFTGPDGKFSVPTMEELGMAKATGI 239
Query: 326 SQGGKPAANSMKGGETEALQRLKKFAAEYQA----QPPKGNKDGNHDSIYGANFSCKISP 381
GGETEAL+RL+ + + +A + PK N + + +SP
Sbjct: 240 HP----------GGETEALKRLEAYMKDKEAIINFEKPKTNPGA-----FDPAATTVLSP 284
Query: 382 WLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+L G LS R+ + L+ G + S L+ + LWR+FF
Sbjct: 285 YLKFGALSVRTFYWRLQDVVK----------GTKHTQPPVS--LIGQCLWREFF 326
>gi|262147205|ref|ZP_06028009.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae INDRE 91/1]
gi|379741653|ref|YP_005333622.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|421332956|ref|ZP_15783433.1| cryptochrome DASH [Vibrio cholerae CP1046(19)]
gi|424599301|ref|ZP_18038482.1| cryptochrome DASH [Vibrio Cholerae CP1044(17)]
gi|424602022|ref|ZP_18041164.1| cryptochrome DASH [Vibrio cholerae CP1047(20)]
gi|262031362|gb|EEY49972.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae INDRE 91/1]
gi|378795163|gb|AFC58634.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|395928358|gb|EJH39111.1| cryptochrome DASH [Vibrio cholerae CP1046(19)]
gi|395976009|gb|EJH85473.1| cryptochrome DASH [Vibrio cholerae CP1047(20)]
gi|408042018|gb|EKG78093.1| cryptochrome DASH [Vibrio Cholerae CP1044(17)]
Length = 461
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 135/315 (42%), Gaps = 37/315 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWSEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + G P
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETISLSAPM-------GYP 173
Query: 302 S-RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 174 HVLPPIEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYK 223
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 224 ETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND-------- 267
Query: 421 GSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 STYWIFFELLWREYF 282
>gi|408373114|ref|ZP_11170812.1| DASH family cryptochrome [Alcanivorax hongdengensis A-11-3]
gi|407766952|gb|EKF75391.1| DASH family cryptochrome [Alcanivorax hongdengensis A-11-3]
Length = 505
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 131/328 (39%), Gaps = 31/328 (9%)
Query: 112 RPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD 171
R L GA + +++WFR DLRV D L A VL +Y R GFD
Sbjct: 23 RALPAGKGAGV--ITVIWFRQDLRVQDQPLLRRAAALGAPVLTLYVLPERWLAAGEEGFD 80
Query: 172 KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHD 231
+ GP ++ FL+ESV L L A G LV G P ++L V A
Sbjct: 81 RLGPAKSCFLLESVQALADGLNALGLTLVTACGGPASLLAHWQAQAPLQVVTA-----EA 135
Query: 232 EVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRK 289
+ E+ AA++ GI V TL D P + ++ FR +V+ G
Sbjct: 136 DAPEEQAGLAALRRAGIPVHEVASRTLLCGDTRP-GASSLCGSFSRFRRRVEADGGPPVA 194
Query: 290 TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK 349
E + + G +L L Q S+ GGE A + L++
Sbjct: 195 QPEGPPPALAAAAPLPLPAGTESALAP--LQQRCRHWLRNHRDYFSLPGGEPVARRWLEQ 252
Query: 350 --FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
F+ + A + + + + G+ FS ++S LA GCLS R ++ + + A+
Sbjct: 253 YLFSDRHIA-----HYNATRNQLIGSGFSSRLSAALAWGCLSVRRVWHAILEYERRHGAS 307
Query: 408 SKWNDGESGSSGAGSNWLMFELLWRDFF 435
S WL FELLWR+FF
Sbjct: 308 EH------------SYWLRFELLWREFF 323
>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
Length = 543
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 148/331 (44%), Gaps = 56/331 (16%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP + SSS +R FL++S
Sbjct: 7 SSVHWFRKGLRLHDNPALLAALRGARCVRCVYILDPW-FAASSSSSGGVNRWR--FLLQS 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM- 243
+ DL +L+ GS L V G+P V L K G + + E +E+ A M
Sbjct: 64 LEDLDSSLRKLGSRLFVGRGQPADVFPRLFKEWGVTRLTFQ---YYSEPFGKERDAAIMK 120
Query: 244 --KDEGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEI-RKTIEALD 295
K+ G+EV TLY LD K+ E+ P Y F+ V +E+ R+ + ++
Sbjct: 121 LAKEAGVEVIVESSHTLYDLD----KIIELNGNSPPLTYKRFQAIVSRMELPRRPVPSIT 176
Query: 296 QLKGLPSRGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL--- 347
+ + R +++ +PSL +LG + P A GGETEAL RL
Sbjct: 177 RQQMEKCRAEIKSTHDDTYGVPSLEELGFPRD-------NPGAAVWPGGETEALARLDRH 229
Query: 348 ---KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 404
K + A Y+ P+ N + S G +SP+L GCLS R + L++ +
Sbjct: 230 LERKAWVAHYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLRELYQKV 281
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 282 ----KKNSPPPLS-------LFGQLLWREFF 301
>gi|384252420|gb|EIE25896.1| cryptochrome [Coccomyxa subellipsoidea C-169]
Length = 524
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 64/346 (18%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANN--ESVSVLPVYCF-----DPRDYGKSSSGFDKTG 174
I++A+IVW R+D+R+ D+ L +A + ++ VLPVYC PR +G G
Sbjct: 6 IKKAAIVWIRSDIRLADHAPLVSACSLPQTCFVLPVYCLSPALLQPRCNIPGLNGIPVLG 65
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA----VYAHREVSH 230
P+R FL+E++ L++ L ARGS L V +P + L + + +Y + ++
Sbjct: 66 PHRGRFLLEALQALQQQLAARGSKLHFAVSRPAEEIPALVRGLAGQVSHVDLYHYLQIGR 125
Query: 231 DEVKSEEKI----EAAMKDEGI--EVKYFWGSTLYHLDDLPFKL--------GEMPTNYG 276
V+ E+ + AA K+ + EV +FWG TLYH + L ++
Sbjct: 126 HSVEEEDAVADAFHAACKESQLTSEVHHFWGHTLYHPHNALAALKPPARDSNSQLAVESH 185
Query: 277 GFREKVKGVEIRKTIEALDQL----------KGLPSRGDVEPGDIPSLLDLGLSQSAAMS 326
GF +R+ + A DQ+ LP + + D ++ L S +++
Sbjct: 186 GF--------VREPLPAPDQIPPFPDSIPSAAPLPKKASTDRTDADAIAAL---PSISVA 234
Query: 327 QGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMG 386
Q G P S+ ++ A A P + G + S K+S +LA G
Sbjct: 235 QEGMPGEASVSRNDSGAAD------GNLSAPAPIDSFKDTRMLAGGVDNSAKLSAYLAAG 288
Query: 387 CLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWR 432
CLSPR ++ E++K A + G+SG S WL+ L+ R
Sbjct: 289 CLSPRMVYAEIQK-------ARNQSGGDSGHS-----WLIMHLIIR 322
>gi|260431373|ref|ZP_05785344.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415201|gb|EEX08460.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 541
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 54/279 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWF+ DLRV D+ +L A+ E VLP+Y +P + + + + +F+ E+++
Sbjct: 40 VVWFKRDLRVSDHPALAQAS-EVGPVLPLYVVEPELWQQPDASARQW-----NFVAETIA 93
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHD-EVKSEEKIEAAMKD 245
+LR +L G L+VRVG+ E VL EL D +++H E +D + + ++ A +D
Sbjct: 94 ELRSDLGELGQPLIVRVGEIEAVLSELLNRGLIDVLWSHEETGNDWTYQRDRQVAAWCRD 153
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK-TIEALDQLKGLPSRG 304
G+ + N+G FR G++ R E D+ LP
Sbjct: 154 HGVRWREV-------------------QNHGVFR----GLKCRDGWAERWDRFMALPVSS 190
Query: 305 -------DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
D EPG IP+ DLGL + G+ A GG L RL F
Sbjct: 191 PVALKHIDTEPGYIPTGRDLGLRDDQCV---GRQA-----GGRAAGLDRLNSFLTR---- 238
Query: 358 PPKGNKDGNHDS--IYGANFSCKISPWLAMGCLSPRSMF 394
+G + S + GA ++SP+LA G LS R ++
Sbjct: 239 --RGERYQREMSSPLEGAVACSRLSPYLAWGALSMREVW 275
>gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
Length = 479
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 139/314 (44%), Gaps = 38/314 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVW R DLRVHDN +L A+ VL V+ DP + D T P R FL ESV
Sbjct: 5 AIVWHRRDLRVHDNPALWQASRTGGQVLAVFIVDPTIVER-----DDTAPARIYFLRESV 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L+K + G L VRVG+P LV LA+A+GA AVY + ++ + + + A++
Sbjct: 60 LELQKAYRTIGGRLAVRVGEPVQQLVALAQAVGAGAVYFNDDIEPYARERDARAAEALRA 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
GI V L+ ++ G P T Y F + K ++L+ P+
Sbjct: 120 AGITVHACAEILLHPAGEVLTAAGGKPYTVYTPFWRQWSAKPKPKPFPTPERLEA-PT-- 176
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSM--KGGETEALQRLKKFAAEYQAQPPKGN 362
VE P L +Q G+P A + GE L++L+ FA E
Sbjct: 177 -VEEQSFPEL-----------AQLGRPFAGELLVSPGEQSGLEQLEAFARE------GLY 218
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+ G + G + + ++S L G + R+++ A ++ A W E AG
Sbjct: 219 RYGERRDLPGCDGTSRLSAHLKFGTVGIRAVW------ARTMDA---WKQAEHDRDRAGL 269
Query: 423 NWLMFELLWRDFFR 436
EL WR+F++
Sbjct: 270 AVWQQELGWREFYK 283
>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
Length = 586
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 138/325 (42%), Gaps = 44/325 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R S+ WFR LR+HDN +L A + V +Y DP SS G + R FL++
Sbjct: 10 RCSVHWFRRGLRLHDNPALQAAIRDGGPVRCIYILDPWFAASSSVGIN-----RWRFLLQ 64
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ DL +L+ GS L V G+P V L K + + + + I
Sbjct: 65 SLEDLDNSLRKLGSRLFVVRGQPTDVFPRLFKEWRVTRLTFEYDSEPFGKERDAAIVKLA 124
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQ 296
K+ G+EV TLY LD + G P Y F+ + +++ K T + ++
Sbjct: 125 KEAGVEVITENSHTLYDLDRIIELNGHKPPLTYKRFQTIISRMDLPKKPVASITHQQMEM 184
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
K E +PSL +LG ++ PA GGETEAL RL K +
Sbjct: 185 CKTEIQDNHDETYGVPSLEELGFP-----TESLAPAV--WLGGETEALTRLDKHLERKAW 237
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A Y+ P+ N + S G +SP+L GCLS R + L + +
Sbjct: 238 VANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV------ 283
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ S+ S L +LLWR+FF
Sbjct: 284 ---KRNSTPPLS--LYGQLLWREFF 303
>gi|443288138|ref|ZP_21027232.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
gi|385881715|emb|CCH22325.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
Length = 441
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 135/311 (43%), Gaps = 53/311 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IV F DLRVHD+ +L T V+P+Y DP G S++ R FL +++
Sbjct: 6 AIVLFTRDLRVHDHPALATTCAAFDRVVPLYVLDPALAGLSAN--------RTRFLHQAL 57
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L+ RG DLVVR G P + LA +GA AV +VS+ + E ++ A +
Sbjct: 58 ADLRDALRERGGDLVVRRGDPVAETIRLAGEVGATAVALSADVSNHARRRERRLRAECER 117
Query: 246 EGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+ ++ F G T+ L P G+ + + R + A ++ LP
Sbjct: 118 HRLRLRLFPGLTVVEPGALRPGGGGDHYRVFSPYHRAWAAARWRDELAAPRRI-ALPD-- 174
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
V G +P A G P ++ GGE A QRL + E G D
Sbjct: 175 GVRVGRVP-----------APPAGESP--DAATGGERIARQRLTDWLPEL------GRYD 215
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
HD + G + S ++SP+L GC+SP S+ + +G S
Sbjct: 216 DQHDDMAGDDTS-RLSPYLRFGCVSPLSV---------------------ANRAGDRSGP 253
Query: 425 LMFELLWRDFF 435
+ ++ WRDF+
Sbjct: 254 FVRQVCWRDFY 264
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 139/313 (44%), Gaps = 33/313 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILER-----DDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIR--KTIEALDQLKGLPSR 303
GIEV+ FW L H L + P T Y F + + KT+E L L+
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPKTLENLQGLEENEGE 179
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
E ++P+L +LG + + + GE A RL++F Q +
Sbjct: 180 KLTETINLPTLENLGFTWQNPL---------PLAPGEKAAHSRLEEFC---QGVINNYQE 227
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
D N + G + ++S L G + R+++ + + A + +
Sbjct: 228 DRNFPAFDGTS---RLSAALKFGAIGIRTIWTATLELLENCCAQE--------AKDSIIT 276
Query: 424 WLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 277 WQQ-ELAWREFYQ 288
>gi|440907719|gb|ELR57829.1| Cryptochrome-1 [Bos grunniens mutus]
Length = 589
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|229523842|ref|ZP_04413247.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae bv. albensis VL426]
gi|229337423|gb|EEO02440.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae bv. albensis VL426]
Length = 461
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 136/314 (43%), Gaps = 35/314 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWSEAKKWFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 178 P---IEQGWQLPLMDI----------VTEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKE 224
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 225 TRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND--------S 268
Query: 422 SNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 269 TYWIFFELLWREYF 282
>gi|431905253|gb|ELK10298.1| Cryptochrome-1 [Pteropus alecto]
Length = 513
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 139/314 (44%), Gaps = 47/314 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNI----AKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI---- 404
+ A ++ P+ N + S G +SP+L GCLS R + +L I
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKLTDLYKKIPWDK 280
Query: 405 --SAASKWNDGESG 416
A +KW +G +G
Sbjct: 281 NPEALAKWAEGRTG 294
>gi|229918425|ref|YP_002887071.1| DASH family cryptochrome [Exiguobacterium sp. AT1b]
gi|229469854|gb|ACQ71626.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b]
Length = 404
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 136/311 (43%), Gaps = 43/311 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I+W++NDLRV D+ L A + + + P + ++ G G R FL ES+
Sbjct: 3 TIIWYQNDLRVDDHLPLEEALHHDDPIEGHFFISPNQFIENRYGVIPLGNERLRFLKESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
D+ +L A G V VG P L +D + R V ++E + E ++ MK
Sbjct: 63 EDVSGSLDALGIPFYVHVGHP------LETLDPSDRLLFQRAVGYNERRRENEV---MKR 113
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
K F G TL+ +D PF+ +MP + E RK +E + + L SR
Sbjct: 114 WKGTYKTFEGFTLFEKEDNPFE--KMPFLF---------TEFRKAVEYDVRPRELISRKA 162
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
+ ++ S + A KGGE A +RL +Y + P + K+
Sbjct: 163 T-----AATREVTFPFSIQEVKQDPRTAFPFKGGELAAKRRLN----DYLSVPIRTYKET 213
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ +G + S K+S +LA G LSPR +F EL+ + + WL
Sbjct: 214 RNG--FGVDDSTKLSAYLANGSLSPRRVFFELEAHE------------RTHGVNESTYWL 259
Query: 426 MFELLWRDFFR 436
FELLWR+FF+
Sbjct: 260 YFELLWREFFQ 270
>gi|425452606|ref|ZP_18832423.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
gi|389765542|emb|CCI08602.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
Length = 474
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 138/313 (44%), Gaps = 33/313 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS LV+ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIR--KTIEALDQLKGLPSR 303
GIEV+ FW L + L + P T Y F + + KT+E L L
Sbjct: 121 GIEVETFWDQLLQAPGQV-LTLSKSPYTVYTPFWKNWSQLAKARPKTLENLQGLDENEGE 179
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
E ++P+L +LG + + + GE AL RL++F Q +
Sbjct: 180 KLTETINLPTLENLGFTWQNPL---------PLTPGEKAALSRLEEFC---QGVINNYQE 227
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
D N + G + ++S L G + R+++ + + A N +
Sbjct: 228 DRNFPAFDG---TSRLSAALKFGTIGIRTIWTATLELLENCRAEEAKNSIITWQQ----- 279
Query: 424 WLMFELLWRDFFR 436
EL WR+F++
Sbjct: 280 ----ELAWREFYQ 288
>gi|261335266|emb|CBH18260.1| DNA photolyase, putative [Trypanosoma brucei gambiense DAL972]
Length = 848
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 171/416 (41%), Gaps = 79/416 (18%)
Query: 55 ISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPL 114
++T H + V PT ST T +T S + +S + L +P + P L
Sbjct: 144 VTTRCDHLFSVVGCPTTVSTATS---GIPNTPSRNYLSEQDALYLSPTTPEEARVP-SAL 199
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNE-----SVSVLPVYCFDPRDYGKSSS- 168
P A + +V+ ND+RVHDN +L A + V+ V D R + + S+
Sbjct: 200 CPQLSACV---MVVFAANDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAV 256
Query: 169 -GFDKTGPYRASFLIESVSDLRKNLQARGS-DLVVRVGKPETVLVELAKAIGA------- 219
GF + P RA F +E+++ LR L+ L+VR G+PE + L GA
Sbjct: 257 GGFFRQSPMRARFFLETLAALRYKLERELRIPLLVRCGRPEDHIPRLVVECGAIDVFLTT 316
Query: 220 --------------DAVYAHREVSHDEVKSEEKIE------------AAMKDEGIE---- 249
+A+ R VS D + IE +A G++
Sbjct: 317 QYAPHEKEVHNDIVEAINQRRWVSRDPTAGYKAIEHDATVVHPFGATSASTKVGVKESRL 376
Query: 250 -----VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI---EALDQLKGLP 301
W +TL H+DDLP + M + + V IR T +++L LP
Sbjct: 377 TAAPVAHSVWQTTLVHIDDLPVPVASMVEGERWYHDDVTTANIRPTAAFDRCINRLSDLP 436
Query: 302 SRGDVEP---------------GDIPSLLDLGL-SQSAAMSQGGKPAANSMKGGETEALQ 345
+RGD+ P G P+L++LG S A + + +S GE A++
Sbjct: 437 ARGDLLPTTGELSGLEPPPLYRGRAPTLVELGYGSPEAFIEEEVIATQSSHPPGEDAAIE 496
Query: 346 RLKKFAAE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 399
R+ + + + G + +Y S ++SP+L+ G LSPR ++EL++
Sbjct: 497 RVLDWLMDGGMTSMLRYGRDRRTNTKMYSQRLS-RLSPYLSCGALSPRRFYEELRR 551
>gi|400600754|gb|EJP68422.1| DASH family cryptochrome [Beauveria bassiana ARSEF 2860]
Length = 720
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 146/361 (40%), Gaps = 55/361 (15%)
Query: 124 RASIVWFRNDLRVHDNESLN----TANNESVSVLPVYCFDPRDY---------------- 163
R + R DLR+ DN + T+++ +LPV P
Sbjct: 5 RVLVYLLRRDLRLADNPVFHRLTSTSDHGFTHLLPVVVLPPDQIETSGFLKSDQTSPFPL 64
Query: 164 GKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVL------VELAKA 216
KS G F + GP+RA F E+V DL+ L + S L++RVG P V+ ++ +
Sbjct: 65 AKSRVGKFWRCGPHRAKFFAEAVWDLKNTLSSHQSGLIIRVGPPADVVRAIIQHLQCSGE 124
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG--EMPTN 274
AV+ +V +E + ++ I A ++ Y++DD + E+P
Sbjct: 125 AAVAAVWMTDDVPWEEKRQQDDISAVCNSANVDFTLI-PDEKYYIDDRDVDIATQELPDV 183
Query: 275 YGGFR-------EKVKGV--EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDL---GLSQS 322
+ +R EK + V ++ ++ L +P + P IP LD LS+
Sbjct: 184 FTTYRKSQEPLREKPRAVYPNMKSSLPPLPPDTLIPPQ--AVPFQIPDDLDTFQKYLSKP 241
Query: 323 AAMSQGGKP-------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANF 375
P +A+ GGE A+ RL+ A ++G + G +F
Sbjct: 242 LVFDLPNPPVNPEDAKSAHPFLGGEQSAIDRLQHLVKSGAASSYSDTRNG----LLGVDF 297
Query: 376 SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S K+S +L +GCL+ R + EL K + G G+ + ELLWRD+
Sbjct: 298 STKLSAFLCLGCLTARQIHSELVKLEDGTDEKYQDAPGYGQGENNGTKSIRLELLWRDYM 357
Query: 436 R 436
R
Sbjct: 358 R 358
>gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
Length = 481
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 139/323 (43%), Gaps = 62/323 (19%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFD-------PRDYGKSSSGFDKTGPYRA 178
S+VWFR DLR +D+ +L A +S V+ + FD PRD D+ R
Sbjct: 4 SLVWFRRDLRDYDHAALYHALKDSEQVVCAFVFDTDILDGLPRD--------DR----RV 51
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
F+ ESV +L+ LQ RG DL+VR GK + LA +G + VY +R+ VK ++
Sbjct: 52 EFIWESVRELKLALQERGGDLLVRHGKATEEIPALASVLGVECVYCNRDYEPAAVKRDDT 111
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + +GI K F ++ D++ K G T + F K +RK + LK
Sbjct: 112 VSQQLGTQGIAFKSFKDQVIFERDEIMTKSG---TPFSVF-TPYKNACLRKLDDF--HLK 165
Query: 299 GLPSRGDVE------PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
P + P +PSL L ++S + Q P M GG
Sbjct: 166 AYPVDRYIHHLAQSAPQPMPSLESLAFARS-NLKQLRLP--TGMSGGMA--------LFE 214
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ + P+ + ++ G ++ +S L G +S R + A + W
Sbjct: 215 DFSERMPRYRDARDFPALKGPSY---LSVHLRFGTVSIRHL------------ARTAWQQ 259
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
G GAG+ + ELLWRDF+
Sbjct: 260 G-----GAGAETWLNELLWRDFY 277
>gi|433460771|ref|ZP_20418395.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432191119|gb|ELK48100.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 497
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 47/291 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESV 185
+VWF+ DLR+HD+ L A VLP+Y +P + G+ S F+ ES+
Sbjct: 4 VVWFKRDLRLHDHAPLYNAVQSGDMVLPLYVAEPSIWQGQELSA------RHYQFVKESL 57
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS-EEKIEAAMK 244
DL+K L+ RG L V VG+ ETVL E+ + G +++AH E S ++++ + MK
Sbjct: 58 HDLQKELKQRGGRLFVAVGEMETVLEEIYETYGPFSLHAHEENGTPVTFSRDQRVRSWMK 117
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+G+ +K +D PF + + GF E+ + +++ +P +
Sbjct: 118 QKGLTMK----------EDQPFGVFRGLNSRDGFSERWEQFMKHPVFPVPEKIPCVPEK- 166
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF-------AAEYQAQ 357
S+L L L Q ++ GG KGG EA + L F + + ++
Sbjct: 167 -------ESVLTLNLDQLDSLYVGGSTLDKGQKGGVEEAHRTLDSFLRVRFHSYSYHISK 219
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
P K + G+ ++SP+LA G +S R + +++T I A S
Sbjct: 220 PLKSARSGS-----------RLSPYLAWGNISLRFV---VQQTWMKIRACS 256
>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
Length = 479
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 141/322 (43%), Gaps = 47/322 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L TA S V+ V+C DP + D P R +++I S+
Sbjct: 6 LFWHRRDLRITDNIGLATARQHSSKVVGVFCLDPNILER-----DDVAPVRVTYMIGSLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ GS L++ G P + LA+A+ A AV+ + +V + I A +KD+
Sbjct: 61 ELQQRYVQAGSQLLILRGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDK 120
Query: 247 GIE-VKYFWGSTLYHLDDLPFKLGEMPTNYGGF------REKVKGVEIRKTIEALDQL-K 298
GI+ + + W L+ D++ T Y F + K K VE +E L + +
Sbjct: 121 GIQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGLTEAEQ 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA----EY 354
L + V+ +P+ DLG A + + GE A +L +F A EY
Sbjct: 181 ELAQKAGVKA--LPTAKDLGFFWDADL---------IIAPGEAAAQAKLAEFTAKAITEY 229
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
Q Q + G N + ++S L G + R+++ T++ A N
Sbjct: 230 QEQ----------RNFPGVNGTSQLSAALKFGVIGIRTVWQ------TTLEALE--NSRS 271
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
++ + W EL WR+F++
Sbjct: 272 EETTTSIRTWQQ-ELAWREFYQ 292
>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
Length = 589
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 141/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
Length = 579
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 143/333 (42%), Gaps = 57/333 (17%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
A+ +I FR LR+HDN SL A S ++ PVY D R + + G G R F
Sbjct: 21 AMSHRTIHLFRKGLRLHDNPSLLGALASSSTLYPVYVLD-RVFLQ---GAMHMGALRWRF 76
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L++S+ DL L+A GS L V G +L EL G + EV + ++ I+
Sbjct: 77 LLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQ 136
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV---EIRKTIEALDQ 296
++ G++ TLY + + G P Y F + + E +++
Sbjct: 137 TVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIED 196
Query: 297 LKGLPSRGDVE-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
+ + DV+ +PSL DLGL A + GGE+ ALQRL+K +Q
Sbjct: 197 FQRCVTPVDVDRVYAVPSLADLGLQVEAEV---------LWPGGESHALQRLEK---HFQ 244
Query: 356 AQPPKGNKDGNHDSIYGANFS-------------CKISPWLAMGCLSPRSMFDELKKTAT 402
+Q + ANFS +SP+L++GCLS R+ + L
Sbjct: 245 SQG------------WVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLN---- 288
Query: 403 SISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
SI A SK N S G ++LWR+FF
Sbjct: 289 SIYAQSK-NHSLPPVSLQG------QVLWREFF 314
>gi|452989984|gb|EME89739.1| hypothetical protein MYCFIDRAFT_202046 [Pseudocercospora fijiensis
CIRAD86]
Length = 611
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 156/366 (42%), Gaps = 57/366 (15%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNES-------VSVLPVYCF------------DPRD 162
++R I R DLR+ DN L+ + + VLP++ F PR+
Sbjct: 1 MQRVLIYLLRRDLRLADNPVLHELSRLNGQPQKPFTHVLPMFVFPAEQVEVSGFLKSPRE 60
Query: 163 ---YGKSSS---GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
Y ++ S GF + G RA F ESV D++K+L SDL+VRVG + + + +
Sbjct: 61 KSPYPEARSRVGGFWRCGKRRAKFTAESVWDVKKDLNQLSSDLIVRVGSVKDAVQSILEG 120
Query: 217 I-GADAVYAH-----REVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFKL 268
G D H E +E EE + + E E K W Y +DD +P K
Sbjct: 121 YRGRDDAEIHGLWMTAEEGWEEKNEEEAVRTLLTKENKEFK-LWTDEKYFVDDRDIPTKD 179
Query: 269 G-EMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPSR--GDVEPGDIPSLLD------- 316
++P + FR+ V+ + RK A L LP P IP+ L+
Sbjct: 180 ARDLPDVFTSFRKTVEPLRDAPRKAHPAPSGLPPLPDHIPEQAAPFAIPNSLEEVIAALH 239
Query: 317 ------LGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 370
+G+S + QG + +A+ GG +R++ K ++G +
Sbjct: 240 KPLDDSVGISDMPKLPQGAE-SAHPFTGGSKAGHERVQHLIESGSMTSYKDTRNG----L 294
Query: 371 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 430
G +FS K+S WLA+GC+S R + +L + K DG G+ + FELL
Sbjct: 295 LGLDFSTKLSAWLALGCVSARQVHWQLIDFEDGKGSVGKNADGYGKGENIGTAGVRFELL 354
Query: 431 WRDFFR 436
WRD+ R
Sbjct: 355 WRDYMR 360
>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
Length = 730
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 144/342 (42%), Gaps = 37/342 (10%)
Query: 105 PLSLGPHRPLDPNNGAAIRRA----SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDP 160
P S H P P + +A RR ++ WFR LR+HDN +L ++V+ V+ DP
Sbjct: 10 PPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 69
Query: 161 RDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD 220
S+ G +K FL++ + DL K+L+ S L V G+P L +L + G
Sbjct: 70 WFASSSNVGINK-----WRFLLQCLEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTT 124
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFR 279
A+ + + I + ++ GI V TLY LD + + G+ P Y F+
Sbjct: 125 ALTFEEDPEPYGRVRDHNIISKCREVGITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQ 184
Query: 280 EKVKGV------EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAA 333
+ + E+ T + L+ + + +P+L +LG ++G KP
Sbjct: 185 ALIASMPPPPPAEVTITPQMLNGATTPITDNHDDRFGVPTLEELGFE-----TEGLKPPI 239
Query: 334 NSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 393
GGE+EAL RL++ G S+ + +SP+L GCLS R
Sbjct: 240 --WIGGESEALARLERHLERKAWVASFGRPKMTPQSLLAS--QTGLSPYLRFGCLSTRLF 295
Query: 394 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ +L + + S G ++LWR+FF
Sbjct: 296 YYQLTELYKRVKRV------RPPLSLHG------QILWREFF 325
>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
gi|82104700|sp|Q8QG61.1|CRY1_CHICK RecName: Full=Cryptochrome-1
gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
Length = 621
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 142/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWSIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 QKCTTPVSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|432094365|gb|ELK25942.1| Cryptochrome-1 [Myotis davidii]
Length = 535
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIRGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVQISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|390437938|ref|ZP_10226447.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
gi|389838649|emb|CCI30571.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
Length = 474
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 143/314 (45%), Gaps = 35/314 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLASNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPKTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ E ++P+L +LG + + + GE A RL++F Q
Sbjct: 179 EKLAETINLPTLENLGFTWQNPL---------PLTPGEKAATSRLEEFC---QGVINNYQ 226
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D N + G + ++S L G + R+++ + + A N +
Sbjct: 227 EDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITWQQ---- 279
Query: 423 NWLMFELLWRDFFR 436
EL WR+F++
Sbjct: 280 -----ELAWREFYQ 288
>gi|414342179|ref|YP_006983700.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
gi|411027514|gb|AFW00769.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
Length = 502
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 146/357 (40%), Gaps = 53/357 (14%)
Query: 81 SASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNE 140
+A TLSPS S + +SA Q+ S P+ IVWFR DLR D+
Sbjct: 4 TACQTLSPSYHSNEDQMSAQGHQTSAS-----PV------------IVWFREDLRFSDHP 46
Query: 141 SLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLV 200
+L A ++ VY D + G +L ++SDLR L L+
Sbjct: 47 ALQAATATGHPLICVYVLD-----DETPALHALGGASRWWLHGALSDLRSTLSRHHGTLL 101
Query: 201 VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYH 260
G E ++ +LAK A VY H + E + +E+I +A+ +G+ + WG+ L
Sbjct: 102 TLKGSAEKLIPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDKQGVSSEASWGTVLLD 161
Query: 261 LDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPG---DIPSLLDL 317
+ K G + F + + ++ ++ L P D+ D +LL
Sbjct: 162 PTQVQTKEGRFYQVFTAFWKAFQSQDVPVPLDPPAHLSFHPLPDDLLSKYRLDETTLLPT 221
Query: 318 GLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSC 377
+A + +P GE EA + L+ F A+ KG + G +
Sbjct: 222 HPDWAAGLRATWEP-------GEREAHEHLEDFLRHDCARYGKGRDE------MGREGTS 268
Query: 378 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
++SP+LA G +SPR +++ ++K G+ G+ + E+ WR+F
Sbjct: 269 RLSPYLASGAISPRQVWEAIQK---------------KGAHDEGARIFLSEIGWREF 310
>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1 [Sus scrofa]
Length = 588
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|407846250|gb|EKG02478.1| DNA photolyase, putative,cryptochrome, putative [Trypanosoma cruzi]
Length = 871
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 164/383 (42%), Gaps = 73/383 (19%)
Query: 89 SKISFKSTLSANPLQSPLSLGPHRPL--DPNNGAAIRRASIVWFRNDLRVHDNESLNTAN 146
S S+ S A L +P L P+ P + + + +V+ ND+RVHDN +L A
Sbjct: 186 SSCSYLSRQDALYLAAPTPLDARMPVVSTPASSSCV---MVVFAANDMRVHDNYTLALAA 242
Query: 147 NES-----VSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLIESVSDLRKNLQAR-GSD 198
+ + V+ V D R + + S+ G+ + P RA F +ES++ LR L+
Sbjct: 243 VRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLESLAKLRAKLEEELNVP 302
Query: 199 LVVRVGKPETVLVELAKAIGADAVYA------HREVSHDE-VKSEEKIEAAMKD--EGIE 249
L++R G+PE + LA GA V+ H + HD V+S ++ + +D G++
Sbjct: 303 LLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVHDTIVESIKRRKWVSRDVASGLK 362
Query: 250 VKY-----------------------------FWGSTLYHLDDLPFKLGEMPTNYGGFRE 280
+K W +TL H+DDLP + M + +
Sbjct: 363 LKTHDAAVSHPYGNCDGDREAVTAAVSPVPHSVWQTTLVHIDDLPVPVAAMAEGERWYHD 422
Query: 281 KVKGVEIRKTI---EALDQLKGLPSRGDVEP---------------GDIPSLLDLGL-SQ 321
V IR T + ++ LP+R ++ P G IP+L LG +Q
Sbjct: 423 DVTVASIRPTAPYDRYIARISSLPTRHELLPTAAERSGLAHPPLYRGSIPTLDQLGYGNQ 482
Query: 322 SAAMSQGGKPAANSMKGGETEALQRLKKFAA--EYQAQPPKGNKDGNHDSIYGANFSCKI 379
A + +S GE A++R++ + A + G + + +Y S ++
Sbjct: 483 EAFAVEEVIATQSSHPPGEHAAIERVEDWLAGGGVTSLLRHGREHRTNVKMYSQRLS-RV 541
Query: 380 SPWLAMGCLSPRSMFDELKKTAT 402
SP+L+ G LSPR ++ L+ AT
Sbjct: 542 SPYLSNGSLSPRRFYEMLRCYAT 564
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 35/314 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQKK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPTTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
D E ++P+L +LG + + + GE A RL++F Q
Sbjct: 179 DKLTETINLPTLENLGFTWQNPL---------PLTPGEKAAHSRLEEFC---QGVINNYQ 226
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D N + G + ++S L G + R+++ + + A + +
Sbjct: 227 EDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAEE--------AKDSII 275
Query: 423 NWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 276 TWQQ-ELAWREFYQ 288
>gi|389686026|ref|ZP_10177349.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
gi|388550368|gb|EIM13638.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
Length = 481
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 139/328 (42%), Gaps = 62/328 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A +V+ +Y PR + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAATQRGPTVV-LYLLSPRQWQAHDDA-----PCKVDFWLRNLE 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L +L L++R + VL++L + + +A++ + E E + + + +
Sbjct: 57 QLSSDLTRLNIPLLIRQAPSWEQAPQVLLQLCRELAVEALHVNEEYGIHESRRDAAVASL 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEAL-DQL- 297
+K +G+ + LD L F+ G + T GG+ + + + V + AL QL
Sbjct: 117 LKSQGVSFHSY-------LDQLLFRPGSVLTKSGGYFQVFSQFRKVCYNRLHSALPPQLA 169
Query: 298 -----KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA- 351
L + D P + G Q PA GET A QRL FA
Sbjct: 170 APRAQAALRIKADALPRQVE-----GFPTPGPHLQALWPA------GETAAQQRLAHFAE 218
Query: 352 ---AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
YQA+ K G + ++SP+LA G LSPR + AA
Sbjct: 219 TQLVHYQAERDLPAKPG----------TSQLSPYLAAGVLSPRQ----------CLHAAL 258
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ N GE S G+ + ELLWR+F++
Sbjct: 259 QNNRGEFASGSPGAVTWINELLWREFYK 286
>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
Length = 587
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
Length = 587
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIIRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|342186313|emb|CCC95799.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 857
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 141/345 (40%), Gaps = 73/345 (21%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-----SVSVLPVYCFDPRDYGKSSS--GFDKTGPYRAS 179
+V+ ND+RVHDN +L A + V+ V D R + + + GF K P RA
Sbjct: 217 VVFAANDMRVHDNYALALAARRAQAAGGLPVIAVAVVDYRSFAQPTEIGGFFKQSPMRAR 276
Query: 180 FLIESVSDLRKNLQAR-GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
F +E+++ LR+ L+ L++R G+PE + L A V+ + + E + +
Sbjct: 277 FFLETLAKLREKLEGELRVPLLIRCGRPEEHIPRLVVECSAIDVFLTTQYTPHEKEVHDA 336
Query: 239 IEAAMK------------------DEGIEVKYF-------------------------WG 255
I A+K D I Y+ W
Sbjct: 337 IMNAVKNRRWVCRDPTSNFGMIEHDATITHPYYGSSGAPGQAFDKGFSLTTAAVPHSVWQ 396
Query: 256 STLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI---EALDQLKGLPSRGDVEP---- 308
+TL H++DLP + M + + V IR T +DQL+ LP R D+ P
Sbjct: 397 TTLVHIEDLPVPVASMAEGERWYHDDVTTANIRPTAAFDRCIDQLRKLPVRHDLLPSTDE 456
Query: 309 -----------GDIPSLLDLGLSQSAAMSQGGKPAANSMKG-GETEALQRLKKFAAE--Y 354
G IP++ +LG A + A S GE A++RL + +
Sbjct: 457 LRGLVTPPAYRGCIPTVAELGYGSPEAFVEEEVIATQSSHPPGEDAAIERLHDWLMDGGM 516
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 399
+ G + + +Y S ++SP+L+ G LSPR ++EL++
Sbjct: 517 SSMLRYGRERRTNTKMYSQRLS-RLSPYLSCGALSPRRFYEELRR 560
>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
Length = 540
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 55/337 (16%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTG 174
A R + WFR LRVHDN +L+ +A N + V P++ DP + + G
Sbjct: 3 AQRSTLVHWFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL L+ S L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPADVFPRIFKSWRVEILSFETDIEPYSMT 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K EG++V+ + T+Y+ + + K LG+ P Y F V+ +++ K + +
Sbjct: 118 RDAAVQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGS 177
Query: 294 LDQLKGL--PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
++L + P + +VE D+ + + Q + P N GGETEAL+R+
Sbjct: 178 PEKLTNITSPPKDEVEQEDLAAYDCPTMEQLVKRPEELGP--NKFPGGETEALRRM---- 231
Query: 352 AEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELK 398
+D D I+ A F + +SP+L GCLS R + +L
Sbjct: 232 -----------EDSLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFYQKLT 280
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ S S + S G +L+WR+F+
Sbjct: 281 EIIKRQSKHS-----QPPVSLIG------QLMWREFY 306
>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
Length = 587
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
Length = 621
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 141/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
Length = 570
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + SV VY DP + SSSG G R FL++S
Sbjct: 8 SSVHWFRKGLRLHDNPALLAALRGANSVRCVYILDPW-FAASSSG----GVNRWRFLLQS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V +L K G + + + + I K
Sbjct: 63 LEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAK 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY D + G P Y F+ + +E+ + T + ++
Sbjct: 123 EAGVEVIVENSHTLYDSDRVIELNGHSPPLTYKRFQAIISRMELPRRLAPSVTRQQMEAC 182
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ R E +PSL +LG S+ PA GGETEAL RL K +
Sbjct: 183 RAEIKRNHDETYGVPSLEELGFH-----SENKGPAI--WPGGETEALARLDRHLERKAWV 235
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ + + S G +SP+L GCLS R + L++ + K N
Sbjct: 236 ANYER--PRMSANSLLASPTG------LSPYLRFGCLSCRLFYYRLQELYQKV----KKN 283
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 284 SPPPLS-------LYGQLLWREFF 300
>gi|440229885|ref|YP_007343678.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
gi|440051590|gb|AGB81493.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
Length = 476
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 145/319 (45%), Gaps = 46/319 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L A + V+ ++ P+ + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALYAACRDPQAQVVALFIATPQQWRRH-----EMAPRQAAFIYANL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
LR L RG LVV+ L + +A G DA++ +R+ +E + + ++E+
Sbjct: 60 LQLRSQLAQRGIPLVVQQCDDFAAAARWLTDYCRATGVDALFYNRQYELNERRRDRQVES 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
A+ E + F + L + GEM + FR+ L +L +
Sbjct: 120 ALA-ETLTCHAFDDALLLPPGSVQTGSGEMYQVFTPFRKAF-----------LQRLLSV- 166
Query: 302 SRGDVEPGDIPSLLDLG-LSQSAAMSQGGKPAAN---SMKGGETEALQRLKKFAAEYQAQ 357
DV PS+ G +++ AA P A + GE AL+RL+ F E Q +
Sbjct: 167 ---DVHSLPAPSVRAGGAIAEPAAPEPFAYPDAEWDAAFPPGEEHALRRLRAFCRE-QVE 222
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
+ +D + + +SP+LA+G LSPR F+ L+ T + ESG+
Sbjct: 223 DYRQQRD-----FPALDATSGLSPYLALGVLSPRQCFNRLRLTCPDLL-----TQPESGA 272
Query: 418 SGAGSNWLMFELLWRDFFR 436
WL EL+WR+F+R
Sbjct: 273 ----FTWLN-ELIWREFYR 286
>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
Length = 570
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 141/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + SV VY DP + SSSG G R FL++S
Sbjct: 8 SSVHWFRKGLRLHDNPALLAALRGANSVRCVYILDPW-FAASSSG----GVNRWRFLLQS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V +L K G + + + + I K
Sbjct: 63 LEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAK 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G P Y F+ + +E+ + T + ++
Sbjct: 123 EAGVEVIVENSHTLYDLDRVIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTRQQMEAC 182
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ R E +PSL +LG S P GGETEAL RL K +
Sbjct: 183 RAEIKRNHDETYGVPSLEELGF-HSENKGHAIWP------GGETEALARLDRHLERKAWV 235
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ + + S G +SP+L GCLS R + L++ + K N
Sbjct: 236 ANYER--PRMSANSLLASPTG------LSPYLRFGCLSCRLFYYRLQELYQKV----KKN 283
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 284 SPPPLS-------LYGQLLWREFF 300
>gi|73969270|ref|XP_862753.1| PREDICTED: cryptochrome-1 isoform 2 [Canis lupus familiaris]
Length = 587
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|417403044|gb|JAA48347.1| Putative deoxyribodipyrimidine photolyase/cryptochrome [Desmodus
rotundus]
Length = 587
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
Length = 598
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 143/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+ES+
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGVN-----RWRFLLESL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEI-RKTIEALDQLKG 299
G+E TLY+ P ++ EM P + F+ V +E+ RK + + Q +
Sbjct: 120 YGVETVVRNTHTLYN----PDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQM 175
Query: 300 LPSRGDV-----EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK----- 349
R + E +PSL +LG +QG + + KGGETEAL+RL K
Sbjct: 176 ARCRTQISDNHDEHYGVPSLEELGFR-----TQGD--SLHVWKGGETEALERLNKHLDRK 228
Query: 350 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ + S G +SP+L GCLS R + L+ +
Sbjct: 229 AWVANFER--PRISGQSLFPSPTG------LSPYLRFGCLSCRVFYYNLRDLFMKL---- 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
SS S L +LLWR+FF
Sbjct: 277 -----RRRSSPPLS--LFGQLLWREFF 296
>gi|432959668|ref|XP_004086356.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 653
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 139/323 (43%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALREAVRGAGTVRCVYFLDPWFAGSSNVGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEAL-DQLKGLP- 301
G+EV TLY LD + G+ P Y F+ + ++ + +E L D L G
Sbjct: 120 AGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISRLDPPEMPVETLSDTLMGCCV 179
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S E +PSL +LG G P+A GGETEAL R+ K + A
Sbjct: 180 TPVSEDHGEKYGVPSLEELGFDTE------GLPSA-VWPGGETEALTRIERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 508
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 146/330 (44%), Gaps = 42/330 (12%)
Query: 116 PNNGAAIRRA-------SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS 168
P++G+A R SIVW R+DLRV DN +L+ A ++ +Y D + S
Sbjct: 7 PDHGSADREGAEEAHGPSIVWLRDDLRVADNPALHAAVERGEPIVVLYVLD-----EESD 61
Query: 169 GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREV 228
G G +L S+S L ++L+ GSDLV+R GK V+ +L + IGA AV +R
Sbjct: 62 GIRPLGGAARWWLHMSLSRLAESLRELGSDLVLRRGKAADVVDDLVREIGAGAVLWNRRY 121
Query: 229 SHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI- 287
E+ + I+ + D G++V+ F GS L + K GE Y F + + E
Sbjct: 122 GGAEIAVDTAIKKDLGDRGLDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQEREEP 181
Query: 288 RKTIEA---LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
RK + A LD + P D+ D LL +A + + P GE L
Sbjct: 182 RKPLPAPKELDAPREAPRSDDL---DGWGLLPTKPDWAAGLRESCDP-------GEAAGL 231
Query: 345 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 404
QRL+ F ++ + +D A + ++S +L G +SP ++ +++T
Sbjct: 232 QRLEDF-VHHELEDYAAQRDEP-----AAMTTSRLSAYLRWGEVSPFQVWHRIQRTRGK- 284
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDF 434
+ G + + EL WR+F
Sbjct: 285 ---------KVGGDEVNATKFLSELGWREF 305
>gi|404312667|ref|NP_001017311.2| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
Length = 618
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 143/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPVLDDHDEKYGVPSLEELGFDTE------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASTTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|296487421|tpg|DAA29534.1| TPA: cryptochrome 1 (photolyase-like) [Bos taurus]
Length = 543
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|82091801|sp|Q6ZZY0.1|CRY1_SYLBO RecName: Full=Cryptochrome-1
gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
Length = 620
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 142/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWNIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|397603437|gb|EJK58421.1| hypothetical protein THAOC_21454 [Thalassiosira oceanica]
Length = 564
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 146/351 (41%), Gaps = 70/351 (19%)
Query: 125 ASIVWFRNDLRVHDNESLNTA---NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++ WFR LR+HDN +L A S+ PVY DP Y K RA FL
Sbjct: 9 VAMHWFRKGLRLHDNPALLHALSLTKNGGSIFPVYVVDPNSYQ-----LLKCSVNRARFL 63
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE------VKS 235
+E DL ++L+ GS L V G P VL E+ K G H DE ++
Sbjct: 64 LECCQDLDESLKRCGSRLYVATGDPVEVLPEMWKKFGV----THMTHESDETGEPYALQR 119
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG-----------FREKVKG 284
+ + A KD G+EV F TL L + + G N GG F++
Sbjct: 120 DTAVAAVAKDAGVEVIDFTSETLRPLGN---REGGYVANCGGDASSVPATMTSFQKLFSR 176
Query: 285 VEIRKTIEALDQLK--GLPSRGD---------VEPGDIPSLLDLGLSQSAAM---SQGGK 330
++ E LD K P D P DIP SQ + + K
Sbjct: 177 IDKGNIPEPLDAPKKEDFPISADEYENDYLTLKHPCDIPWPRGQNRSQIGPIWNRADANK 236
Query: 331 PAANSMKGGETEALQRLKK-------FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWL 383
++ GGE+ AL RL+K + A+Y+ PK + D + +SP+L
Sbjct: 237 VTSHIANGGESYALDRLQKTITARPNWTAQYEK--PKTSCTEVSDPS-----TTVLSPYL 289
Query: 384 AMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
++GC+SPR+++ ++ + + +K N + S G +LLWRDF
Sbjct: 290 SIGCISPRTVWHAIE----TANKQAKTNRTQPPVSLHG------QLLWRDF 330
>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
Length = 477
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 137/318 (43%), Gaps = 37/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + S +V VY DP+ + P R FLIES+
Sbjct: 7 LFWHRRDLRLADNLGLVAATDISPAVTGVYVLDPQLINPTEH-LPPMAPARLWFLIESLV 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ + GS L+V G P VL +LA+ IGA+AV R+V + + ++ ++ +
Sbjct: 66 ELQQRWREAGSRLLVVKGDPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQVAKKLQAD 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G +V W L + L G+ YG F +G + K + GL D+
Sbjct: 126 GRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVLAKQPSTVAAPTGLV---DL 182
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANS-MKGGETEALQRLKKFA-AEYQAQPPKGNKD 364
+P +P+L L ++ S G K A + GE AL +L F A P N
Sbjct: 183 DPAQLPALESL---EALRESHGFKGAEICPCRPGEAAALAQLNSFCDGPLLAYEPDRNFP 239
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMF------DELKKTATSISAASKWNDGESGSS 418
G + Y +S L++G LSPR + E ++ + A + W
Sbjct: 240 GTAGTSY-------LSAALSVGTLSPRQAWCAAQDSREQARSEEHLQAIAVWEQ------ 286
Query: 419 GAGSNWLMFELLWRDFFR 436
EL WR+F++
Sbjct: 287 ---------ELGWREFYQ 295
>gi|392547623|ref|ZP_10294760.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas rubra ATCC
29570]
Length = 454
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 139/320 (43%), Gaps = 33/320 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WF DLR+ DN +L+ A S +L VY +PR +++ G +A+F+ +
Sbjct: 2 KKTLYWFTQDLRLDDNLALDFATQNSDHILFVYVINPRYRIQTNYHCKLLGDRQATFIAD 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ L L + G L+V G+P VL L D V +V E KS +KI +
Sbjct: 62 SLLTLSSQLDSCGHSLLVVEGEPHQVLPHLVSKYEIDQVICAEQVGLYERKSVQKIRKEL 121
Query: 244 KDEGIEVKYFWGSTLY---HLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ + FW TL+ + + LG N+ FR++V+ + + + +
Sbjct: 122 G--AVPLHSFWQHTLFEHTQIQTVSRDLG----NFTQFRKRVE----KAPLSVVTLCRFD 171
Query: 301 PSRGDVEPGDIPSLLDLG-LSQSAAMSQGGKPAAN---SMKGGETEALQRLKKFAAEYQA 356
PSR + S +LG L Q A Q GE A L+ +
Sbjct: 172 PSRLPAPLITVSSANELGILHQWHAQRQDRLTETRVPLDFPAGEEAAQAHLRDYFDSGVV 231
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
+ K + +++ G S K+SP+LA+G LSPR ++ + + A
Sbjct: 232 RRYKETR----NALDGWLNSTKMSPYLALGNLSPRQVWWATEAFEKQVVA---------- 277
Query: 417 SSGAGSNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 278 --NESTYWIKFELLWREYFQ 295
>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome-1 [Equus caballus]
Length = 587
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 143/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPAG------LSPYLRFGCLSCRLFYFRL----TDLYRKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
Length = 587
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 141/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNI----AKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|428201469|ref|YP_007080058.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
gi|427978901|gb|AFY76501.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
Length = 477
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 143/322 (44%), Gaps = 48/322 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S V+ V+C D R+ K D P R +++I +
Sbjct: 6 LFWHRRDLRISDNIGLAAARQKSSRVVGVFCLD-RNLLKR----DDIAPARITYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ GS L++ G P + LA+A+ AV+ + ++ + +EK++ A+K++
Sbjct: 61 ELQQKYLQLGSQLLIVQGDPNQAITALAEALKVQAVFFNLDIEPYAKQRDEKVKEALKEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR--- 303
GI V+ FW L + + G + T Y F + + L+ +KGL +
Sbjct: 121 GIAVETFWDQLLEAPGKIVTQSGNLYTVYSPFWRNWSQQSKQSPAQDLENVKGLTDQEIA 180
Query: 304 -----GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEY 354
G +E +P+ DLG + + GET A +RL +F EY
Sbjct: 181 IAKKAGTIE---LPTAKDLGFIWDNPL---------LLAPGETAAQERLAEFCDRAIYEY 228
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ Q N +I G + ++S L G + R+++ AT + + +D
Sbjct: 229 KEQR-------NFPAIDG---TSRLSAALKFGAIGIRTVWQ-----ATIEAGENSRSDEA 273
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
S S A EL WR+F++
Sbjct: 274 SDSIQAWQQ----ELAWREFYQ 291
>gi|74025462|ref|XP_829297.1| DNA photolyase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70834683|gb|EAN80185.1| DNA photolyase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 848
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/416 (25%), Positives = 170/416 (40%), Gaps = 79/416 (18%)
Query: 55 ISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPL 114
++T H + V PT ST T +T S + +S + L +P + P L
Sbjct: 144 VTTRCDHLFSVVGCPTTVSTATS---GIPNTPSRNYLSEQDALYLSPTTPEEARVP-SAL 199
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNE-----SVSVLPVYCFDPRDYGKSSS- 168
P A + +V+ ND+RVHDN +L A + V+ V D R + + S+
Sbjct: 200 SPQLSACV---MVVFAANDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAV 256
Query: 169 -GFDKTGPYRASFLIESVSDLRKNLQARGS-DLVVRVGKPETVLVELAKAIGA------- 219
GF + P RA F +E+++ LR L+ L+VR G+PE + L GA
Sbjct: 257 GGFFRQSPMRARFFLETLAALRYKLERELRIPLLVRCGRPEDHIPRLVVECGAIDVFLTT 316
Query: 220 --------------DAVYAHREVSHDEVKSEEKIE------------AAMKDEGIE---- 249
+A+ R VS D + E +A G++
Sbjct: 317 QYTPHEKEVHNDIVEAITQRRWVSRDPTAGYKATEHDATVVHPFGVTSASTKVGVKESRL 376
Query: 250 -----VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI---EALDQLKGLP 301
W +TL H+DDLP + M + + V IR T +++L LP
Sbjct: 377 TAAPVAHSVWQTTLVHIDDLPVPVASMVEGERWYHDDVTTANIRPTAAFDRCINRLSDLP 436
Query: 302 SRGDVEP---------------GDIPSLLDLGL-SQSAAMSQGGKPAANSMKGGETEALQ 345
+RGD+ P G P+L++LG S A + + +S GE A++
Sbjct: 437 ARGDLLPTTGELSGLEPPPLYRGRAPTLVELGYGSPEAFIEEEVIATQSSHPPGEDAAIE 496
Query: 346 RLKKFAAE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 399
R+ + + + G + +Y S ++SP+L+ G LSPR ++EL++
Sbjct: 497 RVLDWLMDGGMTSMLRYGRDRRTNTKMYSQRLS-RLSPYLSCGALSPRRFYEELRR 551
>gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37]
gi|119863877|gb|ABM03354.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Psychromonas ingrahamii 37]
Length = 448
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 38/319 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ W DLR++DN +LN A+ +S +L VY D + + ++ G R FL
Sbjct: 2 KRTLYWVNKDLRINDNAALNLAS-KSDRLLCVYVVDKQSFEANNFQSKPLGDIRWQFLQG 60
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ D ++L G + + G + L+ L ++ V + E + ++ +
Sbjct: 61 CLEDFNESLSKLGQAMHIVYGDTLSTLMRLCESYQITDVITTKLPGTYENRLITQLNERL 120
Query: 244 KDEGI-EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ I +V F TL+ LPF+L E+P +Y FR+K+ V I E + ++ LPS
Sbjct: 121 PELTIDQVDQF---TLFTKKSLPFELDELPISYSKFRKKMAEVIIP---EPVSTVQSLPS 174
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA-----AEYQAQ 357
D P + + SA ++ G +GGE + L+ L+++ AEY+
Sbjct: 175 MFDTLPAPTRFKPEWLPTVSAIKAKQGF----EFEGGEQQGLKHLRQYFSSNSPAEYKQ- 229
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
+ N DG + S K+SPWL GC+S R + + L A + G++ S
Sbjct: 230 -VRNNLDGWKN-------SSKLSPWLNSGCISVRQVMNNL--------AEFEQQHGKNSS 273
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ L ELLWR++++
Sbjct: 274 TEC----LYLELLWREYYQ 288
>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
Length = 598
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 143/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+ES+
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGVN-----RWRFLLESL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDTSLRKLNSRLSVVRGQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEI-RKTIEALDQLKG 299
G+E TLY+ P ++ EM P + F+ V +E+ RK + + Q +
Sbjct: 120 YGVETVVRNSHTLYN----PDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQM 175
Query: 300 LPSRGDV-----EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK----- 349
R + E +PSL +LG +QG + + KGGETEAL+RL K
Sbjct: 176 ARCRTQISDNHDEHYGVPSLEELGFR-----TQGD--SLHVWKGGETEALERLNKHLDRK 228
Query: 350 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ + S G +SP+L GCLS R + L+ +
Sbjct: 229 AWVANFER--PRISGQSLFPSPTG------LSPYLRFGCLSCRVFYYNLRDLFMKL---- 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
SS S L +LLWR+FF
Sbjct: 277 -----RRRSSPPLS--LFGQLLWREFF 296
>gi|452847838|gb|EME49770.1| hypothetical protein DOTSEDRAFT_144060, partial [Dothistroma
septosporum NZE10]
Length = 610
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 148/366 (40%), Gaps = 57/366 (15%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTA---NNES----VSVLPVYCF---------------- 158
++R I R DLR+ DN LN N S VLPVY F
Sbjct: 1 MQRVLIYLLRRDLRLADNPILNEISRLNQHSQRPFTHVLPVYVFPAQQVEVSGFLSPGEE 60
Query: 159 -DPRDYGKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
P +S++ F + G RA FL ESV DL+ +L+ S L +R+G + V+ +
Sbjct: 61 KSPYPEARSATARFWRCGKLRAKFLAESVFDLQNDLEKFSSGLTIRIGTVKDVVRSILDG 120
Query: 217 IG------ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFKL 268
A++ E +E E + M E E K W Y +DD LP K
Sbjct: 121 YRQRDDAEVHALWMTGEDGWEEQIEENDVRDLMHSEKKEFK-LWNDEKYFVDDRDLPLKD 179
Query: 269 -GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD-----VEPGDIPSLLD---LGL 319
++ + FR+ V+ + E L ++K LP D +P +IP L GL
Sbjct: 180 PRDLNDVFTAFRKTVEPLRSAPRKE-LPEIKSLPPLPDFIPEQAKPFEIPQTLKDAIAGL 238
Query: 320 SQ---------SAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 370
S+ A G +A+ GG ++R+ K ++G +
Sbjct: 239 SKPLDKDDEIPGAPSLPVGASSAHPFIGGSKAGVERVNHLLESGSMTAYKDTRNG----L 294
Query: 371 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 430
G +FS K+S WLA+GC++ R + + K +G G+ + FELL
Sbjct: 295 LGLDFSTKLSAWLALGCITSRQVHWRMIDFENGKGETGKNANGYGKGENKGTAAVRFELL 354
Query: 431 WRDFFR 436
WRD+ R
Sbjct: 355 WRDYMR 360
>gi|172058092|ref|YP_001814552.1| DASH family cryptochrome [Exiguobacterium sibiricum 255-15]
gi|171990613|gb|ACB61535.1| cryptochrome, DASH family [Exiguobacterium sibiricum 255-15]
Length = 400
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 133/314 (42%), Gaps = 60/314 (19%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A +VW+R DLRV D+E+L A E V V+ D G + +F E+
Sbjct: 2 AGVVWYRKDLRVDDHEALTRACEEEKIVRAVFV---------RQTADGRGKQQMTFEEET 52
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L ++L G +L + G+ L + D VY HR E + E++++
Sbjct: 53 LQSLNEHLVQLGIELTILQGETVEQLTSFIQP--EDVVYFHRMTGEYEARQEQEVQKRFN 110
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSR 303
E + TL+ DD+ E+ + FR++V + + IEA
Sbjct: 111 TRMYETQ-----TLHLRDDIG--SDELKRVFTAFRKRVEQDGRFAEPIEA---------- 153
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKP--AANSMKGGETEALQRLKKFAAEYQAQPPKG 361
PG+I + ++GG A GGE RL A Y QP
Sbjct: 154 ----PGNIQYI-------ELPQTRGGYDPRTAFPFIGGEAAGRNRL----AAYLEQPIFT 198
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
K+ + + + S K+S WLA G LSPR + EL++T + E G++ +
Sbjct: 199 YKETRNG--FNVDDSSKLSAWLANGSLSPRRVMAELQRT-----------EQEHGANES- 244
Query: 422 SNWLMFELLWRDFF 435
+ WL FELLWRDFF
Sbjct: 245 TYWLYFELLWRDFF 258
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 147/315 (46%), Gaps = 37/315 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPTTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLS-QSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ E ++P+L +LG + Q+ G+ AANS RL++F Q
Sbjct: 179 EKLTETINLPTLENLGFTWQNPLPLTPGEKAANS----------RLEEFC---QGVINNY 225
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D N ++ G + ++S L G + R+++ + + A + +
Sbjct: 226 QEDRNFPAVDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAQE--------AKDSI 274
Query: 422 SNWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 275 ITWQQ-ELAWREFYQ 288
>gi|411117128|ref|ZP_11389615.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713231|gb|EKQ70732.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 493
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 142/322 (44%), Gaps = 48/322 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A S V+ V+C DP + D P R S+++ +
Sbjct: 6 LFWHRRDLRLADNVGLAAARQRSSKVVGVFCLDPTILQR-----DDVAPVRVSYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS L++ P+ +V LA + A AV+ +++V + + AA++++
Sbjct: 61 SLQEGYAKVGSQLLIVKTLPQKGIVNLATTLNARAVFWNQDVEPYSRARDRTVAAALREQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR--- 303
GIE FW L+ D+ G+ T Y F E + ++ L Q+ GL ++
Sbjct: 121 GIEACPFWDQLLHAPKDITTGSGQPYTVYTPFWRNWSSKEKSQPLDTLAQVTGLTAKEQE 180
Query: 304 -----GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEY 354
G +E +P+ DLG +A ++ GE A +L++F AEY
Sbjct: 181 LASQAGAIE---LPTAPDLGFIWTAPF---------VIEPGEAGASVKLEEFCNRAIAEY 228
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
Q Q N + G + ++S L G + R+++ A +++A + E
Sbjct: 229 QEQ-------RNFPAYPG---TSQLSAALKFGAIGIRTVW------AATLAAMEQSRSNE 272
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
+ S W EL WR+F++
Sbjct: 273 ARDS--IRTWQQ-ELAWREFYQ 291
>gi|348517126|ref|XP_003446086.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 800
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 141/323 (43%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALREAVQGAATVRCVYFLDPWFAGSSNVGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEAL-DQLKG-LP 301
G+EV TLY LD + G+ P Y F+ + ++ + +E L D L G
Sbjct: 120 AGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISRLDPPEMPVEMLTDTLMGRCV 179
Query: 302 SRGDVEPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
+ + GD +PSL +LG G P+A GGETEAL R+ K + A
Sbjct: 180 TPVSEDHGDKYGVPSLEELGFDTE------GLPSA-VWPGGETEALTRIERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|410965445|ref|XP_003989258.1| PREDICTED: cryptochrome-1 [Felis catus]
Length = 587
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSELI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
Length = 474
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 143/314 (45%), Gaps = 35/314 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYHQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPKTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ E ++P+L +LG + + + GE A RL++F Q
Sbjct: 179 EKLTETINLPTLENLGFTWQNPL---------PLTPGEKAAHSRLEEFC---QGVINNYQ 226
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D N + G + ++S L G + R+++ + + A + +
Sbjct: 227 EDRNFPAFDGTS---RLSAALKFGAIGIRTIWTATLELLENCCAQE--------AKDSII 275
Query: 423 NWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 276 TWQQ-ELAWREFYQ 288
>gi|357032216|ref|ZP_09094156.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
gi|356414443|gb|EHH68090.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
Length = 481
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 139/323 (43%), Gaps = 40/323 (12%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRA 178
+++ R IV FR+DLR+ D+ +L+ A VL VY D +S G
Sbjct: 4 ASSLSRPVIVCFRDDLRMADHPALHEAAASGAPVLCVYVLD-----DETSDLPPPGAASR 58
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
+L +++DLR L+ RG L+ G E +L LA+ A +Y H + E + +E+
Sbjct: 59 WWLHGTLADLRGALEKRGGTLLTLGGPLEKILPRLAEETNARCIYWHHRLHEKERQQDER 118
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + +G+EV+ WGS L + + K G Y F + ++G + E LD
Sbjct: 119 LIRTLNHKGVEVRAQWGSVLLDPERIRTKEGGFYRVYTSFWKALQGQAV---PEPLD--- 172
Query: 299 GLPSRGDVEPGDI-PSLLDLGLSQSAAMSQGGKPAANSMKG----GETEALQRLKKFAAE 353
LPS D + PSL+ AA+ A ++ GE EA + L F
Sbjct: 173 -LPS--DFPFFRVAPSLMKTDRLDEAALLPRHPDWAGGLRSTWEPGEREAHEHLTDFLHH 229
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ + G + + ++SP+LA G +SPR ++ + G
Sbjct: 230 ------EVDHYGRGRDLMAEEGTSRLSPYLASGAISPRQVWATV---------------G 268
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
E G +G + E+ WR+F R
Sbjct: 269 EHGLNGEDARIFRSEIGWREFAR 291
>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
Length = 605
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 141/324 (43%), Gaps = 52/324 (16%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ + DL
Sbjct: 1 WFRKGLRLHDNPALRECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCLEDL 55
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK---- 244
NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 56 DANLRKLNSRLFVIRGQPADVFPRLFKEWKITKL----SIEYDSEPFGKERDAAIKKLAS 111
Query: 245 DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +++
Sbjct: 112 EAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVMEKC 171
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
E +PSL +LG G P+A GGETEAL RL K +
Sbjct: 172 TTPVLDDHDEKYGVPSLEELGFDTE------GLPSA-VWPGGETEALTRLERHLERKAWV 224
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A ++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 225 ANFER--PRMNANSLLASTTG------LSPYLRFGCLSCRLFYFKL----TDLYKKVKKN 272
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 273 SSPPLS-------LYGQLLWREFF 289
>gi|425901487|ref|ZP_18878078.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397883811|gb|EJL00298.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 481
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 139/328 (42%), Gaps = 62/328 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +LN A +V +Y PR + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALNVATQRGPTV-ALYLLSPRQWQAHDDA-----PCKVDFWLRNLE 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L +L L++R + VL++L + + +A++ + E E + + + +
Sbjct: 57 QLSGDLARLNIPLLIRQAPSWEQAPQVLLQLCRELAIEALHVNEEYGIHESRRDTAVASL 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEAL-DQL- 297
+K +G+ + LD L F+ G + T GG+ + + + V + AL QL
Sbjct: 117 LKSQGVGFHSY-------LDQLLFRPGSVLTRSGGYFQVFSQFRKVCYNRLHSALPPQLA 169
Query: 298 -----KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
L + D P + G Q PA GET A QRL +FA
Sbjct: 170 APRAQAALRIKADALPQQVE-----GFPTPGPHLQTLWPA------GETAAQQRLARFAE 218
Query: 353 ----EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
YQA+ + G + ++SP+LA G LSPR + AA
Sbjct: 219 AQLDHYQAERDLPARPG----------TSQLSPYLAAGVLSPRQ----------CLHAAL 258
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ N GE S G+ + ELLWR+F++
Sbjct: 259 QNNRGEFASGSPGAVTWINELLWREFYK 286
>gi|407958302|dbj|BAM51542.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 482
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 42/319 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR++D+ +L A ++ ++ V+C D + + P R ++L+ +
Sbjct: 14 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQA-----EDMAPARVAYLLGCLQ 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ + Q GS+L+V P +L +LA +GA V + K + + A+++
Sbjct: 69 SLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRER 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL-PSRGD 305
G+ + W ++H ++ + G T Y F + + + L+GL P+ +
Sbjct: 129 GLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPAEKE 188
Query: 306 ----VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA----EYQAQ 357
+EP IP L DLG + + GE A QRL F A EYQ
Sbjct: 189 KLAPLEPLAIPQLADLGFIWDQPL---------PLTPGEEAAEQRLDWFVAHGLEEYQ-- 237
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
++ N ++ G + ++S L G +SPR+++ T++ A W S
Sbjct: 238 -----QNRNFPALDG---TSQLSAALKFGVISPRTLWQ------TTLEA---WEQSRSEE 280
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ A EL WR+F++
Sbjct: 281 ARASIETWQQELAWREFYQ 299
>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
Length = 558
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 139/324 (42%), Gaps = 57/324 (17%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FR LR+HDN SL A S ++ PVY D R + + G G R FL++S+ DL
Sbjct: 9 FRKGLRLHDNPSLLGALASSSTLYPVYVLD-RVFLQ---GAMHMGALRWRFLLQSLEDLD 64
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
L+A GS L V G +L EL G + EV + ++ I+ ++ G++
Sbjct: 65 TRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQ 124
Query: 250 VKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV---EIRKTIEALDQLKGLPSRGD 305
TLY + + G P Y F + + E +++ + + D
Sbjct: 125 TYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCVTPVD 184
Query: 306 VE-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
V+ +PSL DLGL A + GGE+ ALQRL+K +Q+Q
Sbjct: 185 VDRVYAVPSLADLGLQVEAEV---------LWPGGESHALQRLEK---HFQSQG------ 226
Query: 365 GNHDSIYGANFS-------------CKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
+ ANFS +SP+L++GCLS R+ + L SI A SK N
Sbjct: 227 ------WVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLN----SIYAQSK-N 275
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S G ++LWR+FF
Sbjct: 276 HSLPPVSLQG------QVLWREFF 293
>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|451814540|ref|YP_007450992.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|2499552|sp|Q55081.1|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780509|gb|AGF51478.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 488
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 42/319 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR++D+ +L A ++ ++ V+C D + + P R ++L+ +
Sbjct: 20 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQA-----EDMAPARVAYLLGCLQ 74
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ + Q GS+L+V P +L +LA +GA V + K + + A+++
Sbjct: 75 SLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRER 134
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL-PSRGD 305
G+ + W ++H ++ + G T Y F + + + L+GL P+ +
Sbjct: 135 GLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPAEKE 194
Query: 306 ----VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA----EYQAQ 357
+EP IP L DLG + + GE A QRL F A EYQ
Sbjct: 195 KLAPLEPLAIPQLADLGFIWDQPL---------PLTPGEEAAEQRLDWFVAHGLEEYQ-- 243
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
++ N ++ G + ++S L G +SPR+++ T++ A W S
Sbjct: 244 -----QNRNFPALDG---TSQLSAALKFGVISPRTLWQ------TTLEA---WEQSRSEE 286
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ A EL WR+F++
Sbjct: 287 ARASIETWQQELAWREFYQ 305
>gi|88859578|ref|ZP_01134218.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
gi|88818595|gb|EAR28410.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
Length = 437
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 141/318 (44%), Gaps = 42/318 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRA--S 179
+++ + F +DLRV DN +L + +++ +Y P+D S F +T P A
Sbjct: 1 MKKIGLFIFDHDLRVLDNPALKVLADSVDTLICLYVHVPQD--AFSQQFSQTQPSAAKLG 58
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL + + +L +NL+ LV+ G +V+ K G + +E + +
Sbjct: 59 FLQQHLVELDENLRLLNQFLVIEHGSVPSVVSNYIKHYGITDIGRTIHAGFNEQHHWQYL 118
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
+A ++ GS+L+ L DLPF+L ++P ++ R+ + + + +EAL L
Sbjct: 119 QATFP--AVKFCAHSGSSLFRLADLPFELADLPKSFTPCRKLFEQLTVPAPLEALTYLP- 175
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAA--NSMKGGETEALQRLKKFAAEYQAQ 357
P LL + KP+A GGE A L + + ++
Sbjct: 176 ------------PPLLS-----TEHKKHDLKPSAFNRYYNGGEITAHAYLHHY---FSSK 215
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
P K+ +++ G +FS K+S +LA G LSPR + LK+ ++ A
Sbjct: 216 APSIYKE-TRNALMGDDFSTKLSGFLAHGALSPRQIMAALKRYESTQGA----------- 263
Query: 418 SGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 264 -NESTYWIYFELLWREYF 280
>gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
Length = 477
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 59/328 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 2 NLVWFRCDLRTSDNSALLAAADGRPCV-ALYLLSPAQWREHDD-----APCKVDFWLRNL 55
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+L++ L A L+VR + TVL L +G AV+ ++E +E + ++ +
Sbjct: 56 SELQRQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANEQRRDQAVAR 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALD 295
++++G+ HLD L F G + T GG+ + +V + + + A+
Sbjct: 116 HLREQGVAFH-------EHLDQLFFAPGSVLTRGGGYFQVFSQFRRVCHERLYQALPAVQ 168
Query: 296 QLKGLPSRGDVEPGD-IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
+ PGD +P + G + A + PA GET A QRL+ FA ++
Sbjct: 169 PRPQPQPPHRLLPGDPLPDAVP-GFAAPGAGLRALWPA------GETAAQQRLRDFAEQH 221
Query: 355 QAQPPKGNKDGNHDSIYGANF-----SCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
D H+ +F + ++SP+LA G LSPR D AA
Sbjct: 222 --------LDDYHEQ---RDFPALPGTSQLSPYLAAGVLSPRQCLD----------AALV 260
Query: 410 WNDGE-SGSSGAGSNWLMFELLWRDFFR 436
N GE SG + W+ ELLWR+F++
Sbjct: 261 ANRGEFSGGRQGAATWIN-ELLWREFYK 287
>gi|383322123|ref|YP_005382976.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325292|ref|YP_005386145.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491176|ref|YP_005408852.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436443|ref|YP_005651167.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|339273475|dbj|BAK49962.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|359271442|dbj|BAL28961.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274612|dbj|BAL32130.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277782|dbj|BAL35299.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
Length = 479
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 42/319 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR++D+ +L A ++ ++ V+C D + + P R ++L+ +
Sbjct: 11 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQA-----EDMAPARVAYLLGCLQ 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ + Q GS+L+V P +L +LA +GA V + K + + A+++
Sbjct: 66 SLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRER 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL-PSRGD 305
G+ + W ++H ++ + G T Y F + + + L+GL P+ +
Sbjct: 126 GLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPAEKE 185
Query: 306 ----VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA----EYQAQ 357
+EP IP L DLG + + GE A QRL F A EYQ
Sbjct: 186 KLAPLEPLAIPQLADLGFIWDQPL---------PLTPGEEAAEQRLDWFVAHGLEEYQ-- 234
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
++ N ++ G + ++S L G +SPR+++ T++ A W S
Sbjct: 235 -----QNRNFPALDG---TSQLSAALKFGVISPRTLWQ------TTLEA---WEQSRSEE 277
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ A EL WR+F++
Sbjct: 278 ARASIETWQQELAWREFYQ 296
>gi|81864807|sp|Q70AD6.1|CRY1_SPAJD RecName: Full=Cryptochrome-1
gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
Length = 587
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 146/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L+V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK----- 349
++ S E +PSL +LG + +S P GGETEAL RL++
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERR 228
Query: 350 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|75048080|sp|Q8WP19.1|CRY1_MACFA RecName: Full=Cryptochrome-1
gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
Length = 586
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KRNSSPPLS-------LYGQLLWREFF 296
>gi|387015300|gb|AFJ49769.1| Cryptochrome-1-like [Crotalus adamanteus]
Length = 622
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 140/327 (42%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SVHWFRKGLRLHDNPALREVIEGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNISKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LATEAGLEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 STCITPVSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|348523572|ref|XP_003449297.1| PREDICTED: cryptochrome-2-like [Oreochromis niloticus]
Length = 672
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 139/321 (43%), Gaps = 40/321 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+E++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADAVRCVYILDPFFAGAANVGIN-----RWRFLLEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDSSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDPEPYGKERDGAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEIRK------TIEAL 294
G+E TLY+LD ++ EM P + F+ V +E+ + T + +
Sbjct: 120 FGVETIVRNSHTLYNLD----RIIEMNNNSPPLTFKRFQTIVSRLELPRRPLPPITQQQM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
D+ + IPSL +LG + G PA +GGE++AL RL K +
Sbjct: 176 DKCHTKIGDNHDQLYSIPSLEELGFR-----TAGLPPAV--WRGGESQALDRLSKHLDKK 228
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ N S+Y + +SP+L GCLS R ++ L++ +
Sbjct: 229 VWVTSLEHPRVNTCSLYAS--PTGLSPYLRFGCLSCRVLYYNLRELYMKV---------R 277
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
S S L +LLWR+FF
Sbjct: 278 KRCSPPLS--LFGQLLWREFF 296
>gi|348553110|ref|XP_003462370.1| PREDICTED: cryptochrome-1-like [Cavia porcellus]
Length = 675
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIRGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCVTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|426404142|ref|YP_007023113.1| deoxyribodipyrimidine photo-lyase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860810|gb|AFY01846.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 435
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + ++ WFR DLR+ DN L A E +VLP++ FD K D R +F+
Sbjct: 1 MSKVTVFWFRRDLRLDDNAGLYHALKERSAVLPLFIFDSEILEKLEDPADA----RVTFI 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ + D+++ L+ + SDL+VR GKP VL L+ + +A+YA+ + K +EK+ A
Sbjct: 57 YDQIQDIKQQLKTKKSDLLVRHGKPLEVLKALSTEMEIEAIYANHDYEPAACKRDEKVAA 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV 282
GIE F L+ D++ + + T Y ++ KV
Sbjct: 117 WAAKAGIEFLTFKDQCLFEKDEILTEARKPYTVYTPYKNKV 157
>gi|344266586|ref|XP_003405361.1| PREDICTED: cryptochrome-1-like [Loxodonta africana]
Length = 583
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 143/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWDITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
Length = 625
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 151/346 (43%), Gaps = 62/346 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDK-----TGPYRAS- 179
+I WFR LR+HDN SL + + SV VY DP G S+ G ++ P S
Sbjct: 5 TIHWFRKGLRLHDNPSLKDSLLGADSVRCVYILDPWFAGSSNVGINRWRICLRSPLTVSQ 64
Query: 180 ------FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
FL++S+ DL +L+ S L V G+P V L KA AVY +E + +
Sbjct: 65 EQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKAHPTVAVYVPQEWNISRL 124
Query: 234 KSE-------EKIEAAMK----DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR-- 279
E ++ +AA+K + G+EV TLY LD + G+ P Y F+
Sbjct: 125 SYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTLYDLDKIIELNGGQSPLTYKRFQTL 184
Query: 280 -EKVKGVEI---RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS 335
++ VE+ T E + + S + +PSL +LG + +S P
Sbjct: 185 ISRMDPVEVPAESITAEIMGKCTTPLSDDHDDKYGVPSLEELGFD-TEVLSSAVWP---- 239
Query: 336 MKGGETEALQRL------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 389
GGETEAL RL K + A ++ P+ N + S G +SP+L GCLS
Sbjct: 240 --GGETEALTRLERHLERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLS 289
Query: 390 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
R + +L T + K N S L +LLWR+FF
Sbjct: 290 CRLFYFKL----TDLYRKVKKNSSPPLS-------LYGQLLWREFF 324
>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
gi|402887532|ref|XP_003907145.1| PREDICTED: cryptochrome-1 [Papio anubis]
gi|355564646|gb|EHH21146.1| hypothetical protein EGK_04148 [Macaca mulatta]
gi|355786488|gb|EHH66671.1| hypothetical protein EGM_03711 [Macaca fascicularis]
gi|380809804|gb|AFE76777.1| cryptochrome-1 [Macaca mulatta]
gi|383415927|gb|AFH31177.1| cryptochrome-1 [Macaca mulatta]
gi|384945408|gb|AFI36309.1| cryptochrome-1 [Macaca mulatta]
Length = 586
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
gi|74735764|sp|Q16526.1|CRY1_HUMAN RecName: Full=Cryptochrome-1
gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
Length = 586
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
Length = 586
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|432863953|ref|XP_004070204.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 667
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 140/319 (43%), Gaps = 36/319 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+E++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGAANVGIN-----RWRFLLEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDCSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDPEPYGKERDGAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSR 303
G+E TLY+LD + P + F+ V +E+ R+ + A+ Q + +
Sbjct: 120 FGVETVVRNSHTLYNLDRIIELNNNSPPLTFKRFQTIVSRLELPRRPLPAITQQQMDSCQ 179
Query: 304 GDVEPGD-------IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
+ GD IPSL +LG ++ PA +GGE+EAL RL K +
Sbjct: 180 RQI--GDNHDQLYSIPSLEELGFR-----TERLPPAV--WRGGESEALDRLSKHLDKKVW 230
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
+ N S+Y + +SP+L GCLS R ++ L++ +
Sbjct: 231 VASVEHTRVNKCSLYAS--PTGLSPYLRFGCLSCRVLYYNLRELYMKL---------RKR 279
Query: 417 SSGAGSNWLMFELLWRDFF 435
S S L +LLWR+FF
Sbjct: 280 CSPPLS--LFGQLLWREFF 296
>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
gi|397525251|ref|XP_003832588.1| PREDICTED: cryptochrome-1 [Pan paniscus]
gi|410216796|gb|JAA05617.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410256668|gb|JAA16301.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410295158|gb|JAA26179.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410354849|gb|JAA44028.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
Length = 586
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|403275987|ref|XP_003929699.1| PREDICTED: cryptochrome-1 [Saimiri boliviensis boliviensis]
Length = 586
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 466
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 141/312 (45%), Gaps = 33/312 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++VWFR+DLR+ DN +L+ A V+ +Y +D + S G G +L
Sbjct: 9 RPAVVWFRDDLRLADNPALHAAAESGRPVICLYVWD-----EDSPGLRSPGEAARWWLHH 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L +++ GS L +R G E VL E+ + A AV+ +R E + +E++++A
Sbjct: 64 SLTSLEESIGRAGSALAIRTGPAERVLAEVLAEVDAGAVFWNRRYGEGERRVDERVKSAA 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPS 302
+D G+ F + L+ + G + Y F R + E R+ + AL +L+ PS
Sbjct: 124 RDTGLVANSFGANLLFEPWTVRTGSGTAFSVYTPFWRACLARPEPRRPLPALRRLRPGPS 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+E ++ LL + + + + KP GE A + L F E A+ +
Sbjct: 184 LPSLELDEL-KLLPVHPDWADGLRETWKP-------GERAAHRELSAFLGEGLAR-YRAE 234
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D + G + ++SP L G LSP F TA + S+ G+
Sbjct: 235 RD-----VPGIAATSRLSPRLRWGELSP---FQVWHATAAA----------RDRSTAEGA 276
Query: 423 NWLMFELLWRDF 434
+ EL WR+F
Sbjct: 277 ATFLSELGWREF 288
>gi|260772745|ref|ZP_05881661.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
metschnikovii CIP 69.14]
gi|260611884|gb|EEX37087.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
metschnikovii CIP 69.14]
Length = 451
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 133/320 (41%), Gaps = 39/320 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYC------FDPRDYGKSSSGFDKTGPYRAS 179
S+ WF NDLR+ DN L A S + Y D R +S+G K
Sbjct: 5 SLYWFTNDLRISDNPLLTQAAQNSHQLTCCYLIPSLTPLDQRFQVVASNGLAKQ-----R 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL+ES++DL LQ G L + G+ + L + + A+ +Y V D +
Sbjct: 60 FLLESLADLDAKLQTLGQSLQIATGEAVSQLCQFIELTEANHLYVSESV--DFAIHQTLR 117
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E ++ + V L+ +LPF L +P ++ FR++V+ +E R + ++
Sbjct: 118 EVRLRYPQLTVVSLNTHRLFEQAELPFSLAALPDSFSVFRKQVESLEGRYSSQSARW--- 174
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS--MKGGETEALQRLKKFAAEYQAQ 357
D+ L S A+ +S +GGE+ AL+ L+ + + +
Sbjct: 175 ---NSDITALPPSVLPSSSSWLSTAIRSINLELRSSPLWRGGESAALEHLEDYFSSDASL 231
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++ + S K SPWLA GCLS + L ND E+
Sbjct: 232 IYKQTRNALDE----WESSTKFSPWLANGCLSIGRLLARL-------------NDYETQR 274
Query: 418 SGAGSN-WLMFELLWRDFFR 436
S W+ FELLWR++F+
Sbjct: 275 GANESTYWIYFELLWREYFQ 294
>gi|449298498|gb|EMC94513.1| hypothetical protein BAUCODRAFT_53277, partial [Baudoinia
compniacensis UAMH 10762]
Length = 579
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 151/367 (41%), Gaps = 63/367 (17%)
Query: 124 RASIVWFRNDLRVHDN-------ESLNTANNESVSVLPVYCF------------------ 158
R I R DLR+ DN + ++ VLP+Y F
Sbjct: 1 RILIYLVRRDLRLADNPVFHEIGRLFSQSHQPFTHVLPIYIFPAEQIEVSGFLSPGVTRS 60
Query: 159 ---DPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAK 215
+ R Y GF + G RA F+ ESV DL+++L++ GS L +RVG V+ +
Sbjct: 61 PYPEARSY---VGGFWRCGRLRAQFIAESVWDLKRDLESTGSGLQIRVGSVRDVVQSILD 117
Query: 216 A------IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFK 267
++ +E + +E + EE++ M EG E K W Y +DD LPF+
Sbjct: 118 GYRERHDCEVHGLWMTKEDAWEEYEEEERVGDLMTAEGKEFK-IWTDEKYLVDDRDLPFQ 176
Query: 268 LG-EMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPSRG--DVEPGDIPSLLD------ 316
E+ + FR+ V+ + RK + ++L LP P IP LD
Sbjct: 177 DARELSDVFTSFRKTVEPLREAPRKELPRPEKLPPLPDFVPPQAPPFTIPDSLDGTIAAL 236
Query: 317 -------LGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDS 369
L ++ M G + +A+ GG +R+ K ++G
Sbjct: 237 FEPLDENLEITDMPTMPPGTQ-SAHPFVGGSQPGRERIHHLIESGSMTAYKDTRNG---- 291
Query: 370 IYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFEL 429
+ G +FS K+S WLA+GC++ R + L + + K G G+ + FEL
Sbjct: 292 LLGLDFSTKLSAWLALGCITARQVHWRLVEFEDGTTDLGKDAPGYGKGENKGTAAVRFEL 351
Query: 430 LWRDFFR 436
LWRD+ R
Sbjct: 352 LWRDYMR 358
>gi|118572249|sp|Q5IZC5.2|CRY1_ERIRU RecName: Full=Cryptochrome-1
gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
Length = 620
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 141/325 (43%), Gaps = 48/325 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWNIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF---- 350
+ E +PSL +LG G P+A GGETEAL RL++
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A+ + P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 229 ASVANFERPRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKVKK 278
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
N S L +LLWR+FF
Sbjct: 279 NSSPPLS-------LYGQLLWREFF 296
>gi|348529122|ref|XP_003452063.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 630
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 139/323 (43%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN SL + + +V VY DP G S+ G + R FL++S+
Sbjct: 5 TIHWFRKGLRLHDNPSLKESLLGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDSSLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEYDSEPFGKERDAAIKKLASE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
G+EV TLY LD + G+ P Y F+ ++ VE+ T E + +
Sbjct: 120 AGVEVTVRTSHTLYELDKIIELNGGQSPLTYKRFQTLISRMDPVEVPAESITAEIMGKCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S E +PSL +LG + +S P GGETEAL RL K + A
Sbjct: 180 TPLSEDHDEKFGVPSLEELGFD-TEGLSSAVWP------GGETEALTRLERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 694
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 137/325 (42%), Gaps = 68/325 (20%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTA----------NNESVSVLPVYCFDPRDYGKSS 167
N A +R +IVWFR DLR+HDN +L+ A +E +++LP+Y
Sbjct: 91 NVALPKRRAIVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYIL-------HR 143
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227
+ GP R FL+E++ DL +++ L+V G E VL + A G ++
Sbjct: 144 PKRQRCGPVRFQFLLEAIEDLARSIAKLDGRLLVLSGDAEEVLRTVIAAWGVTDLFFEAG 203
Query: 228 VSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVE 286
V+H V + ++ A K + V G TLY+ + + G+ PT+Y E + +
Sbjct: 204 VAHYAVDRDNRVRAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLLEITEKMP 263
Query: 287 ------------IRKTIEALDQLKGL--------PSRGDV---EPGDI----------PS 313
+ + D+L L PS DV GD+ P
Sbjct: 264 QPTQPIPAPVKLLNAACFSTDKLFSLLEDVCQQNPSEADVIAGVAGDVKKTESELFVAPP 323
Query: 314 LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY----QAQPPKGNKDGNHDS 369
L GL+ P A + GGE+ A++RL F + Q + PK + S
Sbjct: 324 LTAFGLTPPT-------PHA-PLIGGESAAMKRLDDFCEDERRVGQFEKPKTSP----VS 371
Query: 370 IYGANFSCKISPWLAMGCLSPRSMF 394
I G + + +S +L+ GCLS R F
Sbjct: 372 IDGPS-TTTLSAYLSFGCLSAREFF 395
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 143/314 (45%), Gaps = 35/314 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPTTLETLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ E ++P+L +LG + + + GE A RL++F Q
Sbjct: 179 EKLTETINLPTLENLGFTWQNPL---------PLTPGEKAASSRLEEFC---QGVINNYQ 226
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D N + G + ++S L G + R+++ + + A + +
Sbjct: 227 EDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAQE--------AKDSII 275
Query: 423 NWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 276 TWQQ-ELAWREFYQ 288
>gi|399002467|ref|ZP_10705153.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM18]
gi|398124907|gb|EJM14403.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM18]
Length = 480
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 141/323 (43%), Gaps = 52/323 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A V VY P+ + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAAVRGPCV-AVYLLSPQQWLAHDD-----APCKVDFWLRNLG 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+LR+ L A L++R + VL+EL + + DAV+ + E E + + A
Sbjct: 57 ELRRALDALNIPLLIRQASRWDEAPKVLLELCQQLKIDAVHVNEEYGIHETHRDAAVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG-LP 301
+K GI+ HLD L FK G + T G + + + RK ++L LP
Sbjct: 117 LKARGIDFH-------SHLDHLLFKPGTVLTRTGTYFQVFS--QFRKV--CYERLHASLP 165
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK----GGETEALQRLKKFAAE---- 353
G V + + L + + + +G +S++ GETEA +RL F
Sbjct: 166 --GLVAAPALQAPLHISSDEPPSRVEGFDSPHDSLRALWPAGETEARRRLDAFVDARIDY 223
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
Y ++ K G + ++S +LA G +SPR + AA + N G
Sbjct: 224 YHSERDFPAKPG----------TSQLSAYLAAGVISPRQ----------CLHAALRSNQG 263
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
E S G+ + ELLWR+F++
Sbjct: 264 EFESGKVGAVTWINELLWREFYK 286
>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
Length = 587
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 140/325 (43%), Gaps = 48/325 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNI----AKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF---- 350
+ E +PSL +LG G P+A GGETEAL RL++
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A+ + P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 229 ASVANFERPRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKVKK 278
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
N S L +LLWR+FF
Sbjct: 279 NSSPPLS-------LYGQLLWREFF 296
>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
Length = 477
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 36/314 (11%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
W R DLR+ DN +L A +S V+ ++C DP K + P R +L+ +++L
Sbjct: 8 WHRRDLRLQDNVALAEARQQSAKVVGIFCLDPAILEK-----EDVAPARVKYLLACLAEL 62
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
+N Q GS L++ G P VL ++A+++ VY + +V + + ++ A++ G
Sbjct: 63 AENYQKAGSQLLIFQGNPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIALRQVGA 122
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTN-YGGFREKVKGVEIRKTIEALDQLKGLPS----- 302
+++ FW L H F + P + Y F + + AL +GL
Sbjct: 123 KIETFWDQLL-HAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAPVTALRDCQGLSDAEQKL 181
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
D+ +P+L DLG S KP ++ GET +L +L +F + K +
Sbjct: 182 AKDLGAIALPTLADLGFSWD-------KPF--TVPVGETASLGQLDRFTENF---IEKYD 229
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
D N + G + ++S L G + R+++ + T T++ N S + AG
Sbjct: 230 GDRNFPATDGTS---RLSAALKFGAIGIRTVW---QATETAL------NHCRSKEAEAGV 277
Query: 423 NWLMFELLWRDFFR 436
EL WR+F++
Sbjct: 278 ITWQQELAWREFYQ 291
>gi|414071199|ref|ZP_11407172.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas sp. Bsw20308]
gi|410806377|gb|EKS12370.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas sp. Bsw20308]
Length = 435
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 42/314 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN + ++ + V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRLTDNAIFSDLVSQQCVLDIVFVINPHWFKNNNYQQKPYGVHKQQFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ L RG L V G+P ++L D V V ++ E+ + +
Sbjct: 66 ELQQELIDRGQTLHVLEGEPVSLLKARINEQNIDEV-----VYSEQFGVYEQRQINLLKS 120
Query: 247 GIEVKYFWGS---TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
F G+ TLY DLPF L E+P ++ FR+KV+ + L LP+
Sbjct: 121 HCPSTKFTGTQQDTLYKQSDLPFDLSELPKHFTPFRKKVEAA------TSPISLSTLPN- 173
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGN 362
G +P + L A + A N M GG A LK++ + P
Sbjct: 174 -----GLLPQPITL-----CAKKPLERIANNGVMHGGFKSAQTHLKQY---FSGLLPSTY 220
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K + + G N + K S WLA GC+S R +++ ++ + + +
Sbjct: 221 KI-TRNELDGFNNTTKFSTWLAFGCVSARQVYNAVEAYE------------HNQITNEST 267
Query: 423 NWLMFELLWRDFFR 436
W+ FELLWR++F+
Sbjct: 268 YWIKFELLWREYFK 281
>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
Length = 546
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 143/338 (42%), Gaps = 55/338 (16%)
Query: 120 AAIRRASIVWFRNDLRVHDNESL------NTANNESVSVLPVYCFDPRDYGKSSSGFDKT 173
A + I WFR LRVHDN +L A + V P++ DP + +
Sbjct: 3 AKTKATLIHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDP-----GILDWMQV 57
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G R FL +++ DL K L+ S L V GKP V L K+ + + ++
Sbjct: 58 GANRWRFLQQTLDDLDKQLRQLNSRLYVVRGKPIEVFPRLFKSWNVELLTFESDIEPYAQ 117
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIE 292
+ ++ K GI+V+ T+Y+ + + K LG+ P Y F V+ +++ K ++
Sbjct: 118 TRDAAVQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLAKVLD 177
Query: 293 ALDQLKGL--PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF 350
++L L PSR ++E + + D SQ + + + N GGETE L+R+
Sbjct: 178 KPEKLDALTQPSRDELEQEN-DKVYDCP-SQEQLVKKPNELGPNIFPGGETEGLRRM--- 232
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDEL 397
+D +D ++ A F + +SP+L GCLS R + L
Sbjct: 233 ------------EDSLNDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFYQRL 280
Query: 398 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
K+ S + S G ++LWR+F+
Sbjct: 281 KEILAKHPKHS-----QPPVSLVG------QVLWREFY 307
>gi|392310270|ref|ZP_10272804.1| deoxyribodipyrimidine photolyase single-strand-specific
[Pseudoalteromonas citrea NCIMB 1889]
Length = 449
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 138/317 (43%), Gaps = 35/317 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS-- 179
++R + F D RV DN++L + +++ +YC P+ + F +T A
Sbjct: 1 MKRIGLYLFTQDCRVQDNDALYLLASSVDTLICLYCVAPQT--RYDKQFSQTTASEAQKG 58
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
+L ++ L+ +L G L V G V+ + V + V+++E + +
Sbjct: 59 YLKSTLQGLQNSLAQLGQTLNVEYGDRRGVIADYISRFEITHVASSIPVAYNESHMWQWL 118
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLK 298
++ + S +Y+ LPF L E+P ++ FR+ + + + +T +
Sbjct: 119 KSTFSHVNFQTAN--NSQIYYRTQLPFDLAELPKSFSSFRKFIERDAQCERT-------E 169
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+P R P L+ L + +Q N GGE A + L+ + + +
Sbjct: 170 TIPQRPCFHLPPPPCLMQFKLPKYLINTQN-----NDYYGGEENAQKHLRGY---FNSDA 221
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
G K ++++G +FS SP+LA G LSP+ + L + + + GS+
Sbjct: 222 ASGYKQ-TRNALHGNHFSTLFSPYLAHGALSPQQVLRALNEY-----------ENQHGSN 269
Query: 419 GAGSNWLMFELLWRDFF 435
+ + W+ FELLWR++F
Sbjct: 270 ES-TYWIYFELLWREYF 285
>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
Length = 540
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 148/336 (44%), Gaps = 56/336 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 4 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDP-----GILDWMQVGA 58
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 59 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 118
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 119 DAAVQKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 178
Query: 295 DQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
++LK +P+ + +VE D + + Q + P N GGETEAL+R+
Sbjct: 179 EKLKKMPTPPKDEVEQKDSAAYDCPTIKQLVKRPEELGP--NKFPGGETEALRRM----- 231
Query: 353 EYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELKK 399
++ D I+ A F + +SP+L GCLS R +LK+
Sbjct: 232 ----------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE 281
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S + S L+ +L+WR+F+
Sbjct: 282 IIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|426374041|ref|XP_004053891.1| PREDICTED: cryptochrome-1 [Gorilla gorilla gorilla]
Length = 583
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 142/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLETPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 56/336 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 27 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDP-----GILDWMQVGA 81
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 82 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 141
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 142 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 201
Query: 295 DQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
++LK +P+ + +VE D + + Q + P N GGETEAL+R+
Sbjct: 202 EKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGP--NKFPGGETEALRRM----- 254
Query: 353 EYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELKK 399
++ D I+ A F + +SP+L GCLS R +LK+
Sbjct: 255 ----------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE 304
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S + S G +L+WR+F+
Sbjct: 305 IIKRQPKHS-----QPPVSLIG------QLMWREFY 329
>gi|88798414|ref|ZP_01113999.1| Deoxyribodipyrimidine photolyase [Reinekea blandensis MED297]
gi|88778854|gb|EAR10044.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
Length = 433
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 137/312 (43%), Gaps = 38/312 (12%)
Query: 128 VWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSD 187
+WF D R+ DN +L A E+ +L V+ + + + + GP+R FL S+S+
Sbjct: 1 MWFTQDQRLDDNPALRLAA-EADEMLCVFVVEQGWFQSRRYQYPQMGPHRWVFLQLSLSE 59
Query: 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM-KDE 246
L + LQ G L+V G+ E + L + + V R DE++ +E+ + E
Sbjct: 60 LNQRLQLHGQRLLVVYGQAEVEIGRLVERYDINRVVRARSPGTDELRQWRWLESQFPETE 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR--G 304
+ +TL+ D + P ++ FR + R + A+ + LP+
Sbjct: 120 WCQAD---AATLFEDDQVAGLSRSWPMSFSAFRRLAE----RWVVPAVTAMPQLPNTITQ 172
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
+ +P L + + + GGE+EAL+ L + A Q K +++
Sbjct: 173 QISQLTLPDWLP-----------NARASHSMFDGGESEALRHLDCYLASDYPQTYKRDRN 221
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
D + S K+SPWL G LS R + +L + D + G+S G++W
Sbjct: 222 AIDD----WDSSSKMSPWLNAGNLSARRLKQKLDEY-----------DQQHGASD-GTHW 265
Query: 425 LMFELLWRDFFR 436
L ELLWR++F+
Sbjct: 266 LFVELLWREYFQ 277
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 56/336 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 27 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDP-----GILDWMQVGA 81
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 82 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 141
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 142 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 201
Query: 295 DQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
++LK +P+ + +VE D + + Q + P N GGETEAL+R+
Sbjct: 202 EKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGP--NKFPGGETEALRRM----- 254
Query: 353 EYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELKK 399
++ D I+ A F + +SP+L GCLS R +LK+
Sbjct: 255 ----------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE 304
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S + S G +L+WR+F+
Sbjct: 305 IIKRQPKHS-----QPPVSLIG------QLMWREFY 329
>gi|335436625|ref|ZP_08559418.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
gi|334897588|gb|EGM35719.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
Length = 470
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 136/313 (43%), Gaps = 40/313 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS--VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
I W R DLRV DN L N E+ VLP + FDP + GP R + L+E+
Sbjct: 3 IHWHRRDLRVADNRGLAGDNIEAGEGPVLPAFVFDP-------AVLAHAGPPRVAALLEA 55
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
VS+LR + RGSDLVV G P+TVL LA GA+ V +R+ + K + + A+
Sbjct: 56 VSELRDAYRERGSDLVVARGDPQTVLPTLADEFGAERVTWNRDYTRLGRKRDAAVREALD 115
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
D G+E + L+ + G+ + F +K + E ++A
Sbjct: 116 DAGVERAAVHDAVLHEPGTIRTNDGDPYQVFTYFWKKWRDREKSPAVDAPAPAALADVED 175
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE--YQAQPPKGN 362
D +P+L DL + + PAA+ T A +RL F AE Y+ +
Sbjct: 176 DTP---VPTLADLSVDE---------PAASLPTVTSTAARERLADFCAEDIYRYE---DR 220
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D D + ++S LA G + R +++ AT + A +D E S
Sbjct: 221 RDYPADGC-----TSRLSQHLAYGTIGIREVYE-----ATEEAYARSDSDAERESVRE-- 268
Query: 423 NWLMFELLWRDFF 435
+L WR+F+
Sbjct: 269 --FQSQLAWREFY 279
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 56/336 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 27 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDP-----GILDWMQVGA 81
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 82 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 141
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 142 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 201
Query: 295 DQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
++LK +P+ + +VE D + + Q + P N GGETEAL+R+
Sbjct: 202 EKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGP--NKFPGGETEALRRM----- 254
Query: 353 EYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELKK 399
++ D I+ A F + +SP+L GCLS R +LK+
Sbjct: 255 ----------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE 304
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S + S G +L+WR+F+
Sbjct: 305 IIKRQPKHS-----QPPVSLIG------QLMWREFY 329
>gi|443646532|ref|ZP_21129464.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335725|gb|ELS50187.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
Length = 474
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 10/213 (4%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ GKP LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGKPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRK--TIEALDQLKGLPSR 303
GIEV+ FW L + L + P T Y F + + + T+E L L
Sbjct: 121 GIEVETFWDQLLQAPGQV-LTLSKSPYTVYTPFWKNWSQLAKARPTTLENLQGLDKNEGE 179
Query: 304 GDVEPGDIPSLLDLGLS-QSAAMSQGGKPAANS 335
E ++P+L +LG + Q+ G+ AANS
Sbjct: 180 KLTETINLPTLENLGFTWQNPLPLTPGEKAANS 212
>gi|395819912|ref|XP_003783322.1| PREDICTED: cryptochrome-1 [Otolemur garnettii]
Length = 587
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 143/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEII 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 EKCTTPLFDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
Length = 473
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 132/308 (42%), Gaps = 35/308 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+ D+ +L+ A N V+PV+ D KS +R I +++
Sbjct: 8 LLWYRRDLRLSDHPALSAAANAGRPVIPVFIKD-----KSVDALGAAPKWRLGLGIGALA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
D +L+ S L++R G VL L K GA VY R D VK + KI+ + ++
Sbjct: 63 D---SLEGVSSRLILREGDALEVLQALIKETGAGTVYWSRLYDPDSVKRDSKIKETLCND 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GIE K F G ++ + K G+ Y F VK ++ + A L S D
Sbjct: 120 GIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAPESWPDS 179
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
+ D G AAM +G + GE A RL F A A K +D
Sbjct: 180 DALD-------GWDLGAAMDRGADVVRPFVCLGEKAAQSRLGAFMAHGVAD-YKQTRD-- 229
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
I G + + +S L++G +SP + ++ +DG+ G+ +
Sbjct: 230 ---IPGTDGTSNLSENLSLGEISPHQCWHAAQRAL---------HDGKQGAET-----FL 272
Query: 427 FELLWRDF 434
EL+WR+F
Sbjct: 273 KELVWREF 280
>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 616
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 105/410 (25%), Positives = 178/410 (43%), Gaps = 63/410 (15%)
Query: 69 PTQASTLTHISLSASSTLSPSKISFKST-LSANP---LQSPLSLGPHRPLDPNNGAAIR- 123
P+Q++ + ++ S + T P + ST +P + L G RPL + R
Sbjct: 8 PSQSAVESDLNPSLTMTQHPIREGIPSTRFPTSPPKFYEDTLQTGEQRPLSTSQCEKTRL 67
Query: 124 ----RASIVWFRNDLRVHDNESLNT---ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
R ++WFR DLR+HDN +L+ A + + PVY R K K G
Sbjct: 68 YHKRRRILLWFRRDLRLHDNGALHAAIQATDSDTVLFPVYILH-RPENK------KCGAV 120
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKS 235
R FL+E + D+ +L+ + S L+V G+ + L L +A D ++ ++ + +K
Sbjct: 121 RFQFLLECLEDIDTSLRQKQSRLLVFCGEAISFLTVLMQAWKITDLIFEKFQLPY-AIKR 179
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV-EIRKTIEA 293
+EKI + + I V G+TL+ ++ ++P ++ F + V + + R +
Sbjct: 180 DEKIMSMAQTLHINVTTVSGATLHDPKEIVTLNHNQVPLDFQNFLDIVSDMPQPRLPLLT 239
Query: 294 LDQLKGLPSRGDVEP-----------------GDIPSLLD------LGLSQSAAMSQGG- 329
QL S VE + L+D GL A+ G
Sbjct: 240 PSQLPSFESVISVETLCECFQAEYLSQSLLNITEAQLLIDTIIGKAYGLLTIPALDVFGY 299
Query: 330 -KPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN--FSCKISPWLAM 385
P+ +S + GGE+ AL+RL+ F + + G + S N + +SP+LA
Sbjct: 300 LTPSQHSFLYGGESVALERLEVFCS---IEERVGCFEKPKTSPVQMNPPSTTALSPYLAF 356
Query: 386 GCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
GCLS R++F + + S+ SK G +S G +L+WR+FF
Sbjct: 357 GCLSVRALFYRIMFIQLNFSSVSK---GSPATSLDG------QLMWREFF 397
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 138/313 (44%), Gaps = 33/313 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS LV+ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIR--KTIEALDQLKGLPSR 303
GIEV+ FW L + L + P T Y F + + KT+E L L
Sbjct: 121 GIEVETFWDQLLQAPGQV-LTLSKSPYTVYTPFWKNWSQLAKARPKTLENLQGLDENEGE 179
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
E ++P+L +LG + + + GE A RL++F Q +
Sbjct: 180 KLTETINLPTLENLGFTWQNPL---------PLTPGEKAADSRLEEFC---QGVINNYQE 227
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
D N + G + ++S L G + R+++ + + A + +
Sbjct: 228 DRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAEE--------AKNSIIT 276
Query: 424 WLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 277 WQQ-ELAWREFYQ 288
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
Length = 540
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 148/336 (44%), Gaps = 56/336 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 4 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDP-----GILDWMQVGA 58
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 59 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 118
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 119 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 178
Query: 295 DQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
++LK +P+ + +VE D + + Q + P N GGETEAL+R+
Sbjct: 179 EKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGP--NKFPGGETEALRRM----- 231
Query: 353 EYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELKK 399
++ D I+ A F + +SP+L GCLS R +LK+
Sbjct: 232 ----------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE 281
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S + S L+ +L+WR+F+
Sbjct: 282 IIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|398866188|ref|ZP_10621688.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM78]
gi|398241525|gb|EJN27175.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM78]
Length = 488
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 139/323 (43%), Gaps = 52/323 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L+ A +V VY P + + P + F + ++
Sbjct: 10 LIWLRSDLRVHDNTALSAAAACGPTV-AVYLLSPEQWREHDDA-----PCKVDFWLRNLQ 63
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L L L++R VL+EL + + DAV+ + E E + + +
Sbjct: 64 VLSGALGQLNIPLLIRNAPRWDDAPNVLLELCRQLQIDAVHFNEEYGIHETRRDAAVAQT 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-EALDQLKGLP 301
++ EGIEV+ + LD L FK G + T G + + + RK E L LP
Sbjct: 124 LEAEGIEVRRY-------LDQLLFKPGSVLTKTGSYFQVFS--QFRKVCHERLHH--SLP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK----GGETEALQRLKKFAA----E 353
G V + L++ A +G P +S++ GE EA +RL F
Sbjct: 173 --GLVRTPAAQAALNIASDAIATRVEGFDPPPDSLRELWPAGEDEARRRLDSFTEMQIDY 230
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
YQ++ K G + ++S +LA G +SPR + AA + N G
Sbjct: 231 YQSERDFPAKPG----------TSQLSAYLAAGVISPRQ----------CLHAAMQSNQG 270
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
E S G+ + ELLWR+F++
Sbjct: 271 EIESGKVGAVTWINELLWREFYK 293
>gi|453328412|dbj|GAC89303.1| deoxyribodipyrimidine photolyase [Gluconobacter thailandicus NBRC
3255]
Length = 483
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 129/311 (41%), Gaps = 36/311 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR DLR D+ +L A ++ VY D + G +L ++S
Sbjct: 14 IVWFREDLRFSDHPALQAATATGHPLICVYVLD-----DETPALHALGGASRWWLHGALS 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR L L+ G E ++ +LAK A VY H + E + +E+I +A+ +
Sbjct: 69 DLRSTLSRHHGTLLTLKGSAEKLIPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDKQ 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ + WG+ L + K G + F + + ++ ++ L P D+
Sbjct: 129 GVSSEASWGTVLLDPKQVQTKEGRFYQVFTAFWKAFQSQDVPVPLDPPAHLSFHPLPDDL 188
Query: 307 EPG---DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
D +LL +A + +P GE EA + L+ F A+ KG
Sbjct: 189 LSKYRLDETTLLPTHPDWAAGLRATWEP-------GEREAHEHLEDFLRHDCARYGKGRD 241
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ G + ++SP+LA G +SPR +++ ++K G+ G+
Sbjct: 242 E------MGREGTSRLSPYLASGAISPRQVWEAIQK---------------KGAHDEGAR 280
Query: 424 WLMFELLWRDF 434
+ E+ WR+F
Sbjct: 281 IFLSEIGWREF 291
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 143/322 (44%), Gaps = 48/322 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN LN A S ++ V+CFDP+ D+ P R +L+ +
Sbjct: 6 LFWHRRDLRLDDNIGLNEAQQHSNKIVGVFCFDPKLLQS-----DQVAPARIKYLLGCLK 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L + GS+L+ P T + +LA+ + A AV+ + +V K + +++A++ +
Sbjct: 61 ELAAGYKKAGSELLFLQADPVTAIPKLAETLNASAVFWNHDVEPYGRKRDRAVQSALEAK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
I V W L+ ++ K GE P Y + K + + E + Q++ L D
Sbjct: 121 NIPVHTVWDQLLHAPGEILTK-GEDP--YKVYTPFWKNWQKQPKAEPVGQIRHLTGLTDS 177
Query: 307 EPG--------DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEY 354
E +P+L DLGL+ + + GET A +RL++F +Y
Sbjct: 178 EQAKSATVGKISLPTLNDLGLTWDNDL---------PLLPGETAARERLEQFCDRAILDY 228
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+++ N+ +I G + +S L G +S R E+ +T ++ W D
Sbjct: 229 -------DQNRNYPAIDGTSV---LSAALKFGAISIR----EIWQTTVTL-----WEDTR 269
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
S + EL WR+F++
Sbjct: 270 SDEARDNITAWRQELAWREFYQ 291
>gi|383775319|ref|YP_005459885.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
gi|381368551|dbj|BAL85369.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
Length = 443
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 139/312 (44%), Gaps = 49/312 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++V F DLRVHDN +L A + V+P+Y DP G S + R+ FL + +
Sbjct: 4 AVVLFTRDLRVHDNPALAEACAGAERVIPLYVLDPTLAGLSGN--------RSRFLHQCL 55
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR+ L+ RG DLVVR G P + +A+ A ++ +VS + E ++ +
Sbjct: 56 ADLREQLRERGGDLVVRTGDPVAEAIRVAREHDAATIHLAADVSGYARRRERRLTDEGER 115
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEA-LDQLKGLPSR 303
I V+ G T+ +D + G Y F + + R EA + Q LP
Sbjct: 116 HRIAVRLHPGVTV--VDPGVLRPGGGGDCYKVFTPYFRIWSQTRWRAEAPVPQRVTLPD- 172
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
+ G +P++ D G P ++ +GGET +RL + +
Sbjct: 173 -GIAAGHLPAIPD-----------GDSP--HAAEGGETVGRRRLTAWLSSIDGYGIDAYP 218
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
D HD + A+ + ++SP+L GCLSP +++ A++ D E+
Sbjct: 219 D-VHDDL-PADRTSRLSPYLRWGCLSP-----------LALAEAARTRDAEA-------- 257
Query: 424 WLMFELLWRDFF 435
+ +L WRDF+
Sbjct: 258 -FVRQLCWRDFY 268
>gi|348519202|ref|XP_003447120.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 570
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 139/323 (43%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN SL + S ++ +Y DP G S+ G + R FL++ +
Sbjct: 5 TIHWFRKGLRLHDNPSLKDSIRGSDTLRCIYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQINRLSYEYDSEPFGKERDAAIQKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
G+EV TLY+LD + + P Y F+ ++ VE+ T E L
Sbjct: 120 AGVEVMVRISHTLYNLDKIIELNGNQPPLTYKRFQAVINRMDAVEMPAETITFEVLKNCV 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S E +PSL +LG ++ ++ P GGETEAL RL K + A
Sbjct: 180 TPISEDHDEKFGVPSLEELGF-ETEGLTTAVWP------GGETEALMRLERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKKNH 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 TPPLS-------LYGQLLWREFF 296
>gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
Length = 472
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 142/310 (45%), Gaps = 39/310 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR+ D+ +L A V+PV+ D S +G +R L E +
Sbjct: 8 TLLWFRRDLRLSDHPALTQAAARG-PVIPVFIHD-----DSVAGLGAAPKWR---LGEGL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ R L RG+ L++R G VL L GA AVY R D ++ + +++AA+ D
Sbjct: 59 AVFRDALAERGARLILRRGPAREVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALAD 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G E F G ++ ++ + G+M Y + VK E+ + + A D PS+
Sbjct: 119 RGTEACSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDRPLRAPDL--SAPSKWP 176
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
D +L D L A M++G A GE A RL F+A+ + + K +D
Sbjct: 177 ----DSEALEDWHL--GAGMNRGAAIVARHCTPGEGAAQSRLGAFSAQ-RLEDYKERRD- 228
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES-GSSGAGSNW 424
+ + + +S +L +G +SPR ++ AA + GE+ G SGA
Sbjct: 229 ----MPAEDATSDMSQYLTLGEISPRQLW----------HAALR---GEAEGKSGAEH-- 269
Query: 425 LMFELLWRDF 434
E++WR+F
Sbjct: 270 FRKEVVWREF 279
>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
Length = 540
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 148/336 (44%), Gaps = 56/336 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 4 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDP-----GILDWMQVGA 58
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 59 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 118
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 119 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 178
Query: 295 DQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
++LK +P+ + +VE D + + Q + P N GGETEAL+R+
Sbjct: 179 EKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGP--NKFPGGETEALRRM----- 231
Query: 353 EYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELKK 399
++ D I+ A F + +SP+L GCLS R +LK+
Sbjct: 232 ----------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE 281
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
S + S L+ +L+WR+F+
Sbjct: 282 IIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|86147737|ref|ZP_01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
gi|85834518|gb|EAQ52668.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
Length = 466
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 151/325 (46%), Gaps = 38/325 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F NDLR++DN+ L+ A +SV L +P + + G +R +
Sbjct: 1 MKKIGLYLFTNDLRINDNQLLHYAV-QSVGKLICVIVEPTLVRFSADLAQEQSYGAHRQT 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVG---KPETVLVELAKAIGADAV---YAHREVSHDEV 233
F+ +S+++L NL G LVV +P+ L++ I V +A+ +DE
Sbjct: 60 FVSQSITNLESNLVKFGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYDER 119
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK---T 290
+ +++ + + + STL+ +L F+L ++P+++ FR+ V+ +++ +
Sbjct: 120 QLIHSLQSRHPNLITCLPH--HSTLFDQHELSFELSKVPSSFTKFRKLVEHLDVNRNETV 177
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF 350
I AL L SL +SA +S GGE L L+ +
Sbjct: 178 ISALPPAVRLALTSTSTSTSTISLFSSPNDESAVIS--------DYWGGEDAGLAHLENY 229
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
+ A K ++ + G S K SPWLA+GC+SP++++ LK+
Sbjct: 230 FSHDYAFNYKQTRN----AFDGIENSTKFSPWLALGCVSPKTIYCHLKQF---------- 275
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ + GS+ + + W+ FELLWR++F
Sbjct: 276 -EADHGSNDS-TYWIYFELLWREYF 298
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 135/313 (43%), Gaps = 36/313 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFR DLR+ DN +L+ A V+PV+ D + G+ G R +L S++
Sbjct: 7 LVWFRQDLRLADNPALSDAARSGRPVVPVFVLD----DDTPGGWRPGGASR-WWLHHSLA 61
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L GS LV+R G+ + + EL + GA V +R + + +++A ++
Sbjct: 62 SLSRSLATAGSPLVLRRGRADVAIGELVRETGAGTVLWNRCYEPWATERDSRLKADLRAA 121
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
G+EVK F GS L + GE + F V + + + A D+L+ P+
Sbjct: 122 GVEVKSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAPDRLEAPPTAPA 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF----AAEYQAQPPKG 361
+P + LL + + Q +P GE RL+ F AA+Y +
Sbjct: 182 SDPLESWGLLPTTPDWAGGLRQAWQP-------GEAAVAARLRAFLEGAAADYAEGRDRP 234
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
DG + ++SP+L G +SPR ++ + S + ES
Sbjct: 235 GSDG----------TSRLSPYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAES------ 278
Query: 422 SNWLMFELLWRDF 434
+ EL WR+F
Sbjct: 279 ---FLRELGWREF 288
>gi|406507547|gb|AFS34617.1| cryptochrome 2 [Clunio marinus]
Length = 657
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 137/335 (40%), Gaps = 47/335 (14%)
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
DPN + + WFR LR+HDN +L + + V+ DP G S+ G +K
Sbjct: 3 DPNQLPKKEKHIVHWFRKGLRLHDNPALREGLKNATTFRAVFFVDPWFAGSSNVGINK-- 60
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
FL++ + DL +NL+ S L V G+P L L K + +
Sbjct: 61 ---WRFLLQCLEDLDQNLRRLNSRLFVIRGQPAEKLPMLFKKWNTTCLTFEEDPEPFSKV 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ I K+ IEV TLY L+ + K G+ P Y F+ + +E EA
Sbjct: 118 RDNNITEMCKELNIEVISAVSHTLYKLEKIIEKNNGKAPLTYHQFQAIIASMEPPPPAEA 177
Query: 294 L---DQLKGLPSRGDVEPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL 347
D + + D + D +P+L +LG ++G KP GGETEAL RL
Sbjct: 178 TIAEDIIGNTRTPIDDDHDDRYGVPTLEELGFD-----TEGLKPPI--WIGGETEALARL 230
Query: 348 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR-------SMFDELKKT 400
++ G + S+ + +SP+L GCLS R ++ ++KKT
Sbjct: 231 ERHLERKAWVASFGRPKMSPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKT 288
Query: 401 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+S L +LLWR+FF
Sbjct: 289 CPPLS-------------------LHGQLLWREFF 304
>gi|398876027|ref|ZP_10631187.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM67]
gi|398205319|gb|EJM92103.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM67]
Length = 481
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 34/314 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A + SV VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAASRGPSV-AVYLLSPEQWREHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R + VL++L + + DAV+ + E E + + + A
Sbjct: 57 ELNRALGELNIPLLIRTASRWDEAPKVLLDLCQQLKIDAVHVNEEYGIHESRRDAAVADA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+K +G++ + L+ + K G + FR KV + +++ +L + + S
Sbjct: 117 LKTKGVDFYSYLDQLLFSPGTVLTKTGTYFQVFSQFR-KVCYDRLHRSLPSLVRAPAVQS 175
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ +++ +IPS + G + + PA GE EA +RL F A+ Q K
Sbjct: 176 KLNIDSDEIPSSV-AGFDTPSDTLRALWPA------GEAEARRRLDTF-ADAQIDYYKSE 227
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D + ++S +LA G +SPR + AA + N GE S G+
Sbjct: 228 RD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQGEFESGKVGA 272
Query: 423 NWLMFELLWRDFFR 436
+ ELLWR+F++
Sbjct: 273 VTWINELLWREFYK 286
>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
Length = 524
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 138/324 (42%), Gaps = 49/324 (15%)
Query: 127 IVWFRNDLRVHDNESLNTA----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
I WFR LR+HDN +L A + PV+ DP + K++ K GP R FL+
Sbjct: 8 IHWFRKGLRLHDNPALLNALEKVGESHYELRPVFILDPW-FVKNA----KVGPNRWRFLV 62
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+S+ DL NL+ GS L + G P ++ K + ++ +E+I+
Sbjct: 63 QSLQDLDDNLKKIGSRLFILKGSPTETFKKVFKEWNVKKLTFEVDIEPYAKTRDEEIKKL 122
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKL--GEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ V T+Y L+ + FK + P Y F+ V G
Sbjct: 123 ADHHSVTVVAKVSHTIYDLEKV-FKANGNKAPLTYVKFQSVVAKF-------------GT 168
Query: 301 PSRGDVEPGDIP----SLL-----DLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
P + PG +P +LL ++ L + + G +GGETEAL R++K+
Sbjct: 169 PEKALNAPGKLPKQCQTLLLSDKYNVPLLEEMQVDLTGL-GKELYRGGETEALARMEKYM 227
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
++ D + +SI + + +SP+L GCLSPR M+ L +
Sbjct: 228 SQQDWVCKFSKPDTSPNSIEPS--TTVLSPYLKFGCLSPRLMYHRLHEII---------- 275
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
DG +S S L ++LWR+F+
Sbjct: 276 DGRKHTSPPTS--LTGQMLWREFY 297
>gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
Length = 554
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 126/275 (45%), Gaps = 36/275 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +VWFR DLR+ D+ +L+ A +E +VLP++ DP +G + G L++
Sbjct: 2 RLQVVWFRRDLRLGDHPALHQAASEG-AVLPLFILDPALLQHPETGVARVG-----VLLD 55
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS---EEKIE 240
+++ L L+ S L+VR G+P L+ + KA ADAV AH V + + + +++
Sbjct: 56 NLAALDHELKQLASRLLVRWGEPAACLLSVVKAYRADAVLAH--VDSERIVGRVRDARVQ 113
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ-LKG 299
++ G+ +++ + P L E+ Y +R GV + + A + L
Sbjct: 114 GQLQQAGVPLRWI---------EPPGGLEEL-VPYPAYRRFWHGVMAAEPLPAPGRLLTP 163
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P+ G+ +PSL LG M GKP GG ALQRL+ F + +
Sbjct: 164 PPAAGESTAAAVPSLEALG------MVDDGKPRP---PGGSAAALQRLQAFCRQEVS--- 211
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
++ S A S ISP+L G LS R
Sbjct: 212 --SRYYWQLSYPAARASSGISPYLKFGVLSHRQCL 244
>gi|398882406|ref|ZP_10637374.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM60]
gi|398198948|gb|EJM85898.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM60]
Length = 481
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 142/314 (45%), Gaps = 34/314 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A + SV VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAASRGPSV-AVYLLSPEQWREHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R + VL++L + + DAV+ + E E + + + A
Sbjct: 57 ELSRALGELNIPLLIRTASRWDEAPKVLLDLCQQLKIDAVHVNEEYGIHESRRDAAVAEA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+K G++ + L+ + K G + FR KV + +++ +L + L S
Sbjct: 117 LKTIGVDFYSYLDQLLFSPGTVLTKTGTYFQVFSQFR-KVCYDRLHRSLPSLVRAPALQS 175
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ +++ +IPS + G + + PA GE EA +RL F A+ Q K
Sbjct: 176 KLNIDSDEIPSSV-AGFDTPSDTLRALWPA------GEAEARRRLDTF-ADAQIDYYKSE 227
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D + ++S +LA G +SPR + AA + N GE S G+
Sbjct: 228 RD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQGEFESGKVGA 272
Query: 423 NWLMFELLWRDFFR 436
+ ELLWR+F++
Sbjct: 273 VTWINELLWREFYK 286
>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
Length = 587
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T + +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|432943720|ref|XP_004083252.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 624
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN SL + + +V VY DP G S+ G + R FL++S+
Sbjct: 5 TIHWFRKGLRLHDNPSLKESLLGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL +L+ S L V G+P V L K + A +D ++ +AA+K
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFK----EWKIARLSYEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ ++ VE+ T E +
Sbjct: 116 LASEAGVEVTVRVSHTLYDLDQIIELNGGQSPLTYKRFQTLISRMDPVEMPVESITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 GKCTTPLSDDHDEKFGVPSLEELGFD-TEGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
Length = 471
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 145/329 (44%), Gaps = 68/329 (20%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFD-------PRDYGKSSSGFDKTGPY 176
R ++VW R DLR+ D+ + A S +VLPV+ FD PRD D+
Sbjct: 6 RTALVWLRRDLRLDDHAAFYHALKHSEAVLPVFVFDASILAALPRD--------DR---- 53
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R F+ +S + L+ L G DL++R G P+ + LA +GA+AV+ +R+ +
Sbjct: 54 RVDFIWQSAAALKAELNQLGGDLLIRHGLPQHEIPRLAAELGAEAVFCNRDYEPAARARD 113
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---------KVKGVEI 287
++ + ++G+ + ++ D++ G+ + + ++ ++ +
Sbjct: 114 AEVAQRLAEQGVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLKKLTPFHLQAYPV 173
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL 347
R+ ++AL +P EP +PSL D+G S S K A + + R+
Sbjct: 174 RRYLDAL-----MPR----EPQSMPSLADIGFLPSDLASLPVKAGAAGAEALFADFAGRI 224
Query: 348 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
+++ A+ + G K ++ S++ L G LS R + AA
Sbjct: 225 ERYKAQ---RDFPGVKGVSYLSVH-----------LRFGTLSIRRL------------AA 258
Query: 408 SKWNDGESGSSGAGSNWLMFELLWRDFFR 436
W+DG G+ WL EL+WRDF++
Sbjct: 259 YAWHDGGEGA----MTWLS-ELIWRDFYQ 282
>gi|399992584|ref|YP_006572824.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
gi|398657139|gb|AFO91105.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 479
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 137/317 (43%), Gaps = 53/317 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I W R DLR+ DN +L A V V+PV+ F+ D ++ + G ++
Sbjct: 12 IWWVRRDLRLADNPALAAAVAAGVPVIPVFIFETLDEDLGAAPRFRLG--------LGLA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L K L+ RG+ L++R G + VL +L GA AV+ R + + I+ +K +
Sbjct: 64 HLAKELEQRGARLILRRGPAQEVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQ 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI K F G L+ + K G M Y + + V+ ++ D L PSR
Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDV-------DGLIAAPSRIPA 176
Query: 307 EPGDIPSLLDLGLSQ-SAAMSQGGKPAANSMKGGETEALQRLKKF----AAEYQAQPPKG 361
P P+ DL Q +AAM +G A + GE A +RL +F A+Y K
Sbjct: 177 -PAHWPTSDDLDSWQMAAAMRRGADVVAQYCRVGEDAAQERLAEFLDTRVADY-----KQ 230
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG----ESGS 417
++D + + +S LA G +SPR M W+ G +G
Sbjct: 231 DRD-----FPAVDATSGLSENLAWGEISPRRM----------------WHHGLEARRAGK 269
Query: 418 SGAGSNWLMFELLWRDF 434
SGA + E++WR+F
Sbjct: 270 SGAEH--FLKEIVWREF 284
>gi|218709609|ref|YP_002417230.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
gi|218322628|emb|CAV18793.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
Length = 470
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 147/326 (45%), Gaps = 40/326 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F +DLR++DN+ L+ A +SV L +P + + G +R +
Sbjct: 1 MKKIGLYLFTSDLRINDNQLLHCAA-QSVDKLIFVIVEPTLVRFSADLAQEQSYGAHRQT 59
Query: 180 FLIESVSDLRKNLQA--RGSDLVVRVG---KPETVLVELAKAIGADAV---YAHREVSHD 231
F+ +S+ +L NL G LVV +P+ L++ I V +A+ +D
Sbjct: 60 FVSQSIDNLELNLNLVRLGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYD 119
Query: 232 EVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR--K 289
E + +++ D + + STL+ ++PF+L ++P+++ FR+ V+ +++ +
Sbjct: 120 ERQLIHSLQSRHPDLITCLPH--HSTLFDSHEMPFELSKVPSSFTKFRKLVEHLDVNGGE 177
Query: 290 TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK 349
T+ A P+ IP + + N GGE L L
Sbjct: 178 TVIAHLPPPVTPTLTPAHTTAIPIFSSPNVE---------RAVTNDYLGGEDAGLAHLDN 228
Query: 350 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
+ A A K ++ + G S K SPWLA+GC+SP+++ LK+
Sbjct: 229 YFAHDYALNYKQTRN----AFDGIENSTKFSPWLALGCVSPKTICRHLKQFEI------- 277
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFF 435
E GS+ + + W+ FELLWR++F
Sbjct: 278 ----EHGSNDS-TYWIYFELLWREYF 298
>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
Length = 621
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 135/319 (42%), Gaps = 44/319 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFR LR+HDN +L A + V PV+ DP +SS K G R +FL+ES+
Sbjct: 7 SILWFRKGLRLHDNPALLEACRGAAHVYPVFILDPFFLQQSSY---KVGVNRYNFLLESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL + ++RGS L+V GKPE V + + + + + +I+ +
Sbjct: 64 RDLDASFRSRGSRLLVLRGKPEEVFPRVFREWRITQLCFEVDTEPYARVRDARIQGLADE 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG---FREKVKGVEIRKTIEALDQLKGLPS 302
G+ V TLY G GG ++EK R+ + PS
Sbjct: 124 AGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLWKEKAPAPGGRRG----PACENAPS 179
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAAEYQA 356
D +P+ ++G +++ KGGETEAL+RL K+ A+++
Sbjct: 180 -TDAATTAVPTWQEVGFTEA---------PTTIFKGGETEALKRLSASLADSKWVADFK- 228
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
K + + + +SP++ GCLSPR L + + G S
Sbjct: 229 ------KPDTDPAAFERPATTVLSPYVKFGCLSPRLFHARLLEVYRR-------HRGHSQ 275
Query: 417 SSGAGSNWLMFELLWRDFF 435
+ L +LLWR+FF
Sbjct: 276 PPVS----LRGQLLWREFF 290
>gi|374851431|dbj|BAL54391.1| deoxyribodipyrimidine photo-lyase [uncultured gamma
proteobacterium]
Length = 491
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 139/328 (42%), Gaps = 72/328 (21%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A++VWFR DLR+ DN +L A V+PVY P + G +L +S
Sbjct: 6 AALVWFRRDLRLTDNPALIAALTSHADVVPVYLHAPEEEAPWQPGAASRW-----WLHQS 60
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+S L ++L+ RGS L++R+G L+ L + GA AVY +R V + + +I A++
Sbjct: 61 LSQLEQSLRERGSRLIIRLGPTLESLLALCQETGAAAVYWNRLVDPAVRRRDAQIVRALE 120
Query: 245 DEGIEVKYFWGSTLYH------LDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
GI F G L+ D PF+ + F LK
Sbjct: 121 SCGIRPLVFEGGLLFDPARLKTSQDRPFR------RFTPFYRACL-------------LK 161
Query: 299 GLPSRGDVEPGD------IPSLLDLGLSQSAAMSQGG--KPAANSMKGGETEALQRLKKF 350
GLP+ DV+P P + + L+ M + G + A + + GE AL RL+ F
Sbjct: 162 GLPT--DVQPAPPRLPKVPPGIATVPLAALELMPRIGWYRGLAQTWRPGEAGALARLEAF 219
Query: 351 ----AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
AEY + + + + ++SP L G +SP K+ A SI A
Sbjct: 220 RSGPLAEYASLRDRPDLPA----------TSRLSPHLHFGEISP-------KQVAASILA 262
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDF 434
SG SG + EL+WR+F
Sbjct: 263 --------SGHSGEA---FLRELIWREF 279
>gi|428774053|ref|YP_007165841.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
gi|428688332|gb|AFZ48192.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
Length = 476
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 143/324 (44%), Gaps = 51/324 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ +C DP + D P R ++++ +
Sbjct: 6 LFWHRKDLRITDNLGLHEAYQNSKKIIGFFCLDPDILSR-----DDIAPARVTYMLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRK Q RG +V P+ ++++LA + A+++Y +++V + ++ +K++
Sbjct: 61 ELRKKYQERGGTFLVFKDSPQNIILKLAHNLKANSIYWNKDVEPYSRNRDRELAKTLKEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
I FW ++ D+ K P T YG F ++ E L+++ P+
Sbjct: 121 NINYHAFWDQLMHPPGDVLTKSNNTPYTVYGPF---------WRSWEKLEKVAPFPAPS- 170
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGK---PAANSM----KG------GETEALQRLKKFAA 352
SL+ L ++ + Q G P A ++ +G GE AL+RL+ F +
Sbjct: 171 -------SLISLDENEQKIVDQLGAINLPKAENLGYEWQGDLILAPGEKSALERLEYFCS 223
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+ + + N +I G + +S L G ++PR+++ + +W +
Sbjct: 224 DLLLY---YDDNRNFPAIDGTSL---LSAALKFGAIAPRTIWQK---------TVEEWEN 268
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+S + EL WR+F++
Sbjct: 269 CQSDEARENITAWRKELAWREFYQ 292
>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
Length = 558
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 137/324 (42%), Gaps = 57/324 (17%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FR LR+HDN SL A S ++ PVY D R + + G G R FL++S+ DL
Sbjct: 9 FRKGLRLHDNPSLLGALASSSALYPVYVLD-RVFLQ---GAMHMGALRWRFLLQSLEDLD 64
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
LQA GS L V G +L EL G + EV + ++ I+ ++ G++
Sbjct: 65 TRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQ 124
Query: 250 VKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV---EIRKTIEALDQLKGLPSRGD 305
TLY + + G P Y F + + E +++ + + D
Sbjct: 125 TYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCVTPVD 184
Query: 306 VE-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
V+ +PSL LGL A + GGE+ ALQRL+K +Q+Q
Sbjct: 185 VDRVYAVPSLAHLGLQVEAEV---------LWPGGESHALQRLEK---HFQSQG------ 226
Query: 365 GNHDSIYGANFS-------------CKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
+ ANFS +SP+L++GCLS R+ + L I A SK N
Sbjct: 227 ------WVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLN----CIYAQSK-N 275
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S G ++LWR+FF
Sbjct: 276 HSLPPVSLQG------QVLWREFF 293
>gi|390979651|ref|NP_001070765.2| cryptochrome 1a [Danio rerio]
gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 136/323 (42%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + SV VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQLK 298
G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S E +PSL +LG + +S P GGETEAL RL K + A
Sbjct: 180 TPLSDDHDEKFGVPSLEELGFD-TEGLSSAVWP------GGETEALTRLERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 136/323 (42%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + SV VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQLK 298
G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S E +PSL +LG + +S P GGETEAL RL K + A
Sbjct: 180 TPLSDDHDEKFGVPSLEELGFD-TEGLSSAVWP------GGETEALTRLERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 144/314 (45%), Gaps = 35/314 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L + L + P T Y F + + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLLQAPGQV-LTLSKSPYTVYTPFWKNWSQL-AKASPKTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+ E ++P+L +LG + + + GE A RL++F Q
Sbjct: 179 EKLAETINLPTLENLGFTWQNPL---------PLAPGEKAARSRLEEFC---QGVINNYQ 226
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D N + G + ++S L G + R+++ + + A + +
Sbjct: 227 EDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAQE--------AKDSII 275
Query: 423 NWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 276 TWQQ-ELAWREFYQ 288
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 141/313 (45%), Gaps = 40/313 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY---RASFLIE 183
I+WFR DLR+ D+ +L TA +E ++P+Y +P G TGP +A +L
Sbjct: 20 ILWFRKDLRISDHAALATAVDEGFRIVPLYIREPEHAG--------TGPLGAAQAWWLHH 71
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ L +L A G+ LV+R G + L +L GA AV+ +R + ++ ++A +
Sbjct: 72 SLEALSASLDALGASLVLRSGAADAALSDLITETGASAVFWNRRYDPSGISVDKALKAKL 131
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+GIEV+ F G L+ L G Y F + + G + E + K LP+
Sbjct: 132 IADGIEVRTFAGQILHEPTKLKTGAGGHFRVYTPFWKALDGSG--EPPEPIPAPKALPAP 189
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
+ S DL L ++G + + + GE A +RL A++ A KG +
Sbjct: 190 EHWPKSEKLSDWDL-LPTKPNWAKGFE---SEWQPGEDGARKRL----ADFIASGLKGYR 241
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
G +SP LA+G +SP S++ + + S S+ +
Sbjct: 242 --TRRDFPGEAHVSMLSPHLALGEISPASVWHATRGLSDSYSS---------------ED 284
Query: 424 WLMF--ELLWRDF 434
++ F EL+WRDF
Sbjct: 285 YIHFRKELVWRDF 297
>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
Length = 377
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 142/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN +L S ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AIHWFRKGLRLHDNPALKECIQGSDTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWKISRLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ +EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LASEAAVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 GKCTTPVSDDHDEKYGVPSLEELGFDTE------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASTTG------LSPYLRFGCLSCCLFYFKL----TDLYKMV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
gi|118572250|sp|Q32Q86.1|CRY1_RAT RecName: Full=Cryptochrome-1
gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 588
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 145/314 (46%), Gaps = 45/314 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESV-SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
I WFR DLR+ DN +L A + S +V+PV+ FD + G P R FL++S+
Sbjct: 3 IHWFRRDLRLRDNTALLAAADASGGAVIPVFIFD-----DAILGGRFASPARTQFLLDSL 57
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L L++ G LV+R G+P T L+ L + GA V +R+ + V+ + I+ ++
Sbjct: 58 TALDGELRSLGLHLVLRRGEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELRA 117
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF----REKVKGVEIRKTIEALDQLKGLP 301
G + + + ++ ++++ G+ T Y + R +++ +R ++ + +L +P
Sbjct: 118 AGYRAESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVR--VQGVPELTAIP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+P +P+L DL + ++ + GET A L+ F A
Sbjct: 176 LPAS-DP--LPALNDLLPTAPTSVPR--------FATGETAARAALEHFIHNAIA----- 219
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
N D + A + ++SP+L G LSPR + AA + SG G
Sbjct: 220 NYATARDLVAIAG-TSRLSPYLRFGVLSPRQ----------CVVAA------RAAPSGPG 262
Query: 422 SNWLMFELLWRDFF 435
+ EL+WR+F+
Sbjct: 263 PESWIGELIWREFY 276
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 145/320 (45%), Gaps = 44/320 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP ++ P R ++++ +
Sbjct: 6 LFWHRRDLRISDNMGLAAARKQSSKIVGLFCLDPNILNS-----NEVAPARVTYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+++ GS L++ G+P + +LA A+ V+ H++ + + K+E + +
Sbjct: 61 ELKESYSKIGSQLLIVRGEPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS---R 303
GI V +W L+ +D+ + G+ T Y F + + E LD+++GL + +
Sbjct: 121 GIAVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVAEKLDRIQGLTAEEIK 180
Query: 304 GDVEPG--DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEYQAQ 357
E G +P+ DLG + + GET A ++L++F+ A+YQ Q
Sbjct: 181 IAQETGVVSLPTGKDLGYYWDGEL---------ILTPGETAAREQLEEFSERAIAQYQEQ 231
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD-ELKKTATSISAASKWNDGESG 416
N ++ G + +SP L G + R+++ L+ T S S + N
Sbjct: 232 -------RNFPAVEGTSL---LSPALRFGVIGIRTVWQATLEATKNSYSEEVRANI---- 277
Query: 417 SSGAGSNWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 278 -----ETWQK-ELAWREFYQ 291
>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
Length = 540
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 145/337 (43%), Gaps = 55/337 (16%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTG 174
A R + WFR LRVHDN +L+ TA N + V P++ DP + + G
Sbjct: 3 AQRSTLVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL L+ S L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSLT 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K EG++V+ T+Y+ + + K LG+ P Y F V +++ K +
Sbjct: 118 RDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGV 177
Query: 294 LDQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
++LK +P+ + +VE D + + Q + P N GGETEAL+R+
Sbjct: 178 PEKLKKMPTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGP--NKFPGGETEALRRM---- 231
Query: 352 AEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELK 398
++ D I+ A F + +SP+L GCLS R +LK
Sbjct: 232 -----------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLK 280
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ S + S L+ +L+WR+F+
Sbjct: 281 EIIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|421782185|ref|ZP_16218644.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
gi|407755741|gb|EKF65865.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
Length = 476
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 147/315 (46%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A + + VL V+ P + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQH-----EMAPCQAAFIHANL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEA 241
+++ L RG LV + V+ A A +A++ +R+ +E+K +++ +
Sbjct: 60 LQVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQR 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + GEM Y FR+ I++ E+ ++ LP
Sbjct: 120 RLSGQVI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAF----IQRLTES--DVRSLP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ E G +P + AA A GE ALQRL+ F E Q Q
Sbjct: 173 APKRREGGALPVSV-----APAAFDYPQVEAGADFPAGEDAALQRLRAFCRE-QVQDYLQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D +I G + +SP+LA+G LSPR F+ L+ + + +SG+ G
Sbjct: 227 QRD--FPAIAGTS---SLSPYLAIGVLSPRQCFNRLRAECPQVL-----ENSDSGAFG-- 274
Query: 422 SNWLMFELLWRDFFR 436
WL EL+WR+F+R
Sbjct: 275 --WLN-ELIWREFYR 286
>gi|237799740|ref|ZP_04588201.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022595|gb|EGI02652.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 482
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 138/317 (43%), Gaps = 40/317 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + K F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAALQRGPTLAVYLLSPAQWHSHDDADCKV-----DFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K L L++R K VL L K + + V+ ++E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDKAPEVLSTLCKELKVEGVHLNQEYGVNETRRDQAVQQT 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ +GI V ++ LD L FK G + T G + + + K V + EA+ +L
Sbjct: 117 LEKDGIHVTHY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRLVR 169
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P +P + S D Q + K + GE EA +R+ FA E Q
Sbjct: 170 TPPAQ--QPLSVKS--DAIPEQVKGFATPSKALRDLWPAGEAEASRRMAAFADE-QISYY 224
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K ++D + ++S +LA G +SPR + AA N GE +
Sbjct: 225 KTDRD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALASNQGEFETGD 269
Query: 420 AGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 270 VGTVTWINELLWREFYK 286
>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
Length = 506
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 138/321 (42%), Gaps = 37/321 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL SV+ V+ DP G S+ G +K FL++
Sbjct: 11 KHTVHWFRKGLRLHDNPSLREGIKNSVTFRCVFVIDPWFAGSSNVGINK-----WRFLLQ 65
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL ++L+ S L V G+P L +L K G + + + I A
Sbjct: 66 CLEDLDRSLRKLNSRLFVIRGQPADTLPKLFKEWGTTNLTFEEDPEPFGRVRDLNIMAMC 125
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV----EIRKTIEALDQLK 298
K+ GI V TLY L+ + K G P Y F+ + + E +T+ A + L+
Sbjct: 126 KELGISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTIIANIGPPPEPEETVTA-NLLE 184
Query: 299 G----LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
G L D + G +P+L +LG KP S GGE+EAL RL++
Sbjct: 185 GSQTPLSDDHDNKYG-VPTLEELGFETDKL-----KPTVWS--GGESEALARLERHLERK 236
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
G+ S+ + +SP+L GCLS R + +L + I A
Sbjct: 237 AWVASFGHPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLVELYKKIKKAM------ 288
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
S G +LLWR+FF
Sbjct: 289 PPLSLHG------QLLWREFF 303
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 50/324 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ D++ L A +S V+ V+C DP + D P R +++I +
Sbjct: 6 LFWHRRDLRISDHKGLAAAREKSSQVVGVFCLDPNILDQ-----DDVAPARVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+K + GS L++ G+P + + +LAKA+ A AVY + +V ++++ A+K+
Sbjct: 61 ELQKQYEKVGSQLLILQGQPSSAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEV 120
Query: 247 GIEVKYFWGSTLYHLDDL-------PFKLGEMPTNYGGFREKVKGVEI---RKTIEALDQ 296
I V+ W L+ D++ P+K+ N R+K K + T Q
Sbjct: 121 NIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSENPTGLTEKQ 180
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA---- 352
LK G + D+P DLG + ++ GE A RL++F
Sbjct: 181 LKIAKENGII---DLPLAEDLGFVWENEL---------ILEPGEEAAQNRLEEFCDRALF 228
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
EY Q DG + ++S L G +S R+++ A ++ A
Sbjct: 229 EYDEQRNFPANDG----------TSQLSAALKFGVISIRTVW------AKTVEAMENTRS 272
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
E+ ++ W EL WR+F++
Sbjct: 273 DEARNNIKA--WQQ-ELAWREFYQ 293
>gi|410944062|ref|ZP_11375803.1| deoxyribodipyrimidine photolyase [Gluconobacter frateurii NBRC
101659]
Length = 483
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 133/311 (42%), Gaps = 36/311 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR DLR+ D+ +L A ++ +Y D + G +L +++
Sbjct: 14 IVWFREDLRLSDHLALQAALATGQPLICLYVLD-----DETPALHSLGGASRWWLHGALA 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR+ L L++ G E ++ +LA+ GA +VY H + E + +E+I A+K +
Sbjct: 69 DLRRTLGRHQGTLLMLKGSAEKLVPQLARETGAQSVYWHHRLHQKEREQDERIAIALKTQ 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G + WG+ L + K G + F + + ++ + + G P+
Sbjct: 129 GAAAEGSWGTVLLDPAQVQTKEGRFYQVFTTFWKAFQAQDVPEPL-------GSPANLSF 181
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAAN---SMKGGETEALQRLKKFAAEYQAQPPKGNK 363
P L L +S + AA S + GE EA + L+ F ++ KG
Sbjct: 182 YPLSDSLLAQYWLDESTLLPTHPDWAAGLRASWEPGEKEAHEHLEDFVRHDCSRYGKGRD 241
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ + + + ++SP+LA G +SPR ++ L+K G+ G+
Sbjct: 242 ELSREG------TSRLSPYLASGAISPRQIWAALQK---------------KGAHDEGAR 280
Query: 424 WLMFELLWRDF 434
+ E+ WR+F
Sbjct: 281 IFLSEIGWREF 291
>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 555
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|333926094|ref|YP_004499673.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333931047|ref|YP_004504625.1| deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|386327917|ref|YP_006024087.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
gi|333472654|gb|AEF44364.1| Deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|333490154|gb|AEF49316.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333960250|gb|AEG27023.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
Length = 476
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 44/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A + + VL V+ P + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQH-----EMAPRQAAFIHANL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEA 241
+++ L RG LV + V+ A A DA++ +R+ +E+K +++ +
Sbjct: 60 LQVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVDALFYNRQYEFNELKRDQQAQR 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + GEM Y FR+ I++ E+ ++ LP
Sbjct: 120 RLSGQVI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAF----IQRLTES--DVRSLP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN---SMKGGETEALQRLKKFAAEYQAQP 358
+ E G +P SA + P A GE ALQRL+ F E Q Q
Sbjct: 173 APKLREGGVLPV--------SAVPAAFDYPQAEVGVDFPAGEDAALQRLRAFCRE-QVQD 223
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+D +I G + +SP+LA+G LSPR F+ L+ + + +SG+
Sbjct: 224 YLQQRD--FPAIAGTS---SLSPYLAIGVLSPRQCFNRLRAECPQVL-----ENSDSGAF 273
Query: 419 GAGSNWLMFELLWRDFFR 436
G WL EL+WR+F+R
Sbjct: 274 G----WLN-ELIWREFYR 286
>gi|332534683|ref|ZP_08410514.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas haloplanktis ANT/505]
gi|332035895|gb|EGI72377.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas haloplanktis ANT/505]
Length = 435
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 42/314 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN + ++ ++ V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRLTDNAIFSDLASQQCALDIVFVINPHWFKNNNYQQKSYGVHKQQFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA---M 243
+L++ L RG L V G+P +VL D V + E + ++A +
Sbjct: 66 ELQQALIERGQTLHVLEGEPVSVLKARINEQNIDEVVYSEQFGLYEQRQINLLKAHCPNV 125
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+ G + TL+ DLPF L E+P ++ FR+KV+ + L LP+
Sbjct: 126 RFTGAQ-----QDTLFKQSDLPFDLSELPKHFTPFRKKVEAA------TSPISLSTLPN- 173
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGN 362
G +P + L A + A N M GG A L+++ + P
Sbjct: 174 -----GLLPQPITL-----CAKKPLERIANNGVMHGGFKSAQTHLEQY---FSGLLPSTY 220
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K + + G N + K S WLA GC+S R ++ ++ + + +
Sbjct: 221 KI-TRNELDGFNNTTKFSTWLAFGCVSARQVYKAVEAYE------------HNQITNEST 267
Query: 423 NWLMFELLWRDFFR 436
W+ FELLWR++F+
Sbjct: 268 YWIKFELLWREYFK 281
>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1 [Pongo abelii]
Length = 586
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL +L+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
Length = 556
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 135/323 (41%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + SV VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI------RKTIEALDQLK 298
G+EV TLY LD + G+ P Y F+ + +E T E +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVVTPAETITAEVMGPCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S E +PSL +LG + +S P GGETEAL RL K + A
Sbjct: 180 TPLSDDHDEKFGVPSLEELGFD-TEGLSSAVWP------GGETEALTRLERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|398842541|ref|ZP_10599720.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM102]
gi|398105638|gb|EJL95725.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM102]
Length = 482
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 145/325 (44%), Gaps = 56/325 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A SV VY P+ + K F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAAARGPSV-AVYLLSPQQWLAHDDASCKV-----DFWLRNLI 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+LR+ L A L++R + VL+EL + + DAV+A+ E E + + + A
Sbjct: 57 ELRQALGALNIPLLIRKASLWEEAPKVLLELCQQLKIDAVHANEEYGIHETRRDAAVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +GI+ + LD L FK G + T G + + + + V + +L +L
Sbjct: 117 LKAQGIDFYRY-------LDQLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPRLVT 169
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK----GGETEALQRLKKFAAE-- 353
P+ I + L + + + +G ++S++ GE+EA +RL+ F
Sbjct: 170 APA--------IQAPLGIASDEPPSRVEGFDTPSDSLRALWPAGESEARRRLETFTDTQI 221
Query: 354 --YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
Y ++ K G + ++S +L G +SPR + AA + N
Sbjct: 222 DYYHSERDFPAKPG----------TSQLSAYLTAGVISPRQ----------CLHAALQSN 261
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
GE S G+ + ELLWR+F++
Sbjct: 262 QGEFESGKVGAVTWINELLWREFYK 286
>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
Length = 545
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 129/320 (40%), Gaps = 41/320 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L + + ++ DP G S+ G +K FL++ +
Sbjct: 10 VHWFRKGLRLHDNPTLKAGLKGATTFRGIFIIDPWFAGSSNVGINK-----WRFLLQCLE 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL L+ L V G+P VL +L K G + ++ + I ++
Sbjct: 65 DLDTTLRKLNGRLFVVRGQPAHVLPQLFKTWGTTCLTFEKDPEPFGKVRDANITHIAREM 124
Query: 247 GIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVE----------IRKTIEALD 295
GI+V TLY L+ + K G++P Y F+ + +E +R +A
Sbjct: 125 GIQVIIKTSHTLYKLEKIISKNGGKLPLTYKTFQNVLSTMEPPPLPASPVTVRDVGDAFT 184
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
+ E +P+L +LG A + KGGE+EAL RL+
Sbjct: 185 PI----DEDHDEKYGVPTLEELGFETENL-------APSIWKGGESEALARLEHHLERKA 233
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
G S+Y + +SP+L GCLS R F EL I + +
Sbjct: 234 WVASFGRPKMTPQSLYPSRTG--LSPYLRFGCLSARRFFAELNDLYRKIKKSP------A 285
Query: 416 GSSGAGSNWLMFELLWRDFF 435
S G +LLWR+F+
Sbjct: 286 PLSLHG------QLLWREFY 299
>gi|452824468|gb|EME31471.1| photolyase/blue-light receptor (PHR2) [Galdieria sulphuraria]
Length = 362
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 138/328 (42%), Gaps = 83/328 (25%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTA-NNESVS---VLPVYCFDPRDYGKSSSGFDKTG 174
G A RR +VWF DLRV DNE+L A N SV VLP+ +
Sbjct: 87 GGAPRRI-LVWFFADLRVQDNEALIKAVQNGSVPGGLVLPLV------------ALHQEM 133
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
P A V +L+ LQ RGSDL V ++E+ G +A+Y + D+++
Sbjct: 134 PRSA------VVELKTELQRRGSDLCVLPKFSTESVLEVCHKYGIEAIYYNHAELPDQIQ 187
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP-FKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ ++ +GI+V+ FW +TL D ++ +M + F ++ K V++ + +
Sbjct: 188 LQTEMITDLESKGIQVEGFWSNTLVSPDQFANLEISDM--GFRKFSQEAKNVKVSQPLSV 245
Query: 294 LDQLKGLPSRGDVEPGDIPSLLD-------LGLSQSAAMSQGGKPAANSMKGGETEALQR 346
++L +P DIP LLD +++S A S NS K + + R
Sbjct: 246 PNKLPHVPE-------DIPRLLDNSVGTYGFSIAESTAWSLLETHQKNSCKESDGAFIFR 298
Query: 347 LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
LK P+L GC+SPR++FD +K+
Sbjct: 299 LK--------------------------------PYLDHGCISPRNLFDSMKEM------ 320
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDF 434
N+ + SG L ELLWR +
Sbjct: 321 ----NNKHTIPSGM-FQILYAELLWRSY 343
>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
Length = 538
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 140/327 (42%), Gaps = 41/327 (12%)
Query: 121 AIRRASIVWFRNDLRVHDNESL------NTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
A RR + WFR LRVHDN +L A E V P++ DP + + G
Sbjct: 3 AQRRTLVHWFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +S+SDL + L+A + L V GKP + L + + ++ V
Sbjct: 58 ANRWRFLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFERWQVQLLTYETDIEPYAVL 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ +G++V T+Y+ + + + LG+ P Y F V+ +++ K +
Sbjct: 118 RDAAVQQLAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFLGIVEKLKLPKVLNK 177
Query: 294 LDQL-KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
+L G+ D + D P+L L + + N GGE+EAL+R++ A
Sbjct: 178 PKKLPDGMQPLADSDIYDYPTLEQL-------VKRPEDLGINKFPGGESEALRRMEASLA 230
Query: 353 EYQA----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ Q + PK + S + +SP+L GCLS R + L++ S
Sbjct: 231 DEQWVAKFEKPKTAPNSLEPS------TTVLSPYLKFGCLSARLFHERLQEILARQPKHS 284
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K S G +LLWR+F+
Sbjct: 285 K-----PPVSLVG------QLLWREFY 300
>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
Length = 588
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRWVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
Length = 541
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 141/329 (42%), Gaps = 37/329 (11%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANN------ESVSVLPVYCFDPRDYGKSSSGFDKT 173
+A RR + WFR LRVHDN +L+ N E V P++ DP + +
Sbjct: 2 SAKRRTLVHWFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDP-----GILDWMQV 56
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G R FL +S+ DL K L+ S L + GKP V EL + + ++ +
Sbjct: 57 GANRWRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQLLTFESDIEPYAL 116
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIE 292
+ + ++ + G++V T+Y+ + + K LG+ P Y F V +++ K +
Sbjct: 117 QRDTTVQKIASEHGVKVDTHCSHTIYNPELVIAKNLGKAPVTYQKFLGIVDKLKLPKVLA 176
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKP----AANSMKGGETEALQRLK 348
+ GLP G D +D + + Q K N GGETEAL+R++
Sbjct: 177 VPE---GLPD-GIKPIADEFEAVDSCVYDCPTLDQLVKRPQELGVNKFPGGETEALRRME 232
Query: 349 K--FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
+ A K N N S+ + + +SP+L GCLS R + + LK+
Sbjct: 233 ASLIDENWVAAFEKPNTAPN--SLEPS--TTVLSPYLKFGCLSARLLHERLKEILVRKPK 288
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDFF 435
SK S G +LLWR+F+
Sbjct: 289 HSK-----PPVSLVG------QLLWREFY 306
>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
Length = 463
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 128/317 (40%), Gaps = 33/317 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI W R LR+HDN +L A + VY D + S+ G + FL++++
Sbjct: 23 SIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVASSNIGLN-----LWRFLLQAL 77
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L + G + + + + I ++
Sbjct: 78 EDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLARE 137
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVE-----IRKTIEALDQLKG 299
G+EV TLYHL + + G P Y F ++G+ + + +L
Sbjct: 138 AGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQKLGH 197
Query: 300 LP-SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P S E +P++ +LGL S K GGETEAL+RL +
Sbjct: 198 TPLSDNHDELYGVPTMEELGLETS-------KLFVEVWHGGETEALKRLDRHLERKAWIA 250
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
G DS+ + +SP+L GCLSPR + L + G +S
Sbjct: 251 SFGKPKVTSDSLMAS--PSGVSPYLRFGCLSPRLFYYRLMDLYRKVKG------GPPPTS 302
Query: 419 GAGSNWLMFELLWRDFF 435
G +LLWR+FF
Sbjct: 303 LYG------QLLWREFF 313
>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
Length = 512
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 141/325 (43%), Gaps = 44/325 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + ++ DP G S+ G +K FL++
Sbjct: 4 KHTVHWFRKGLRIHDNPSLREGLINAKTFRCIFILDPWFAGASNVGINKW-----RFLLQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+SDL +L+ S L V G+P L +L + G + ++ I+
Sbjct: 59 CLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLP-FKLGEMPTNYGGFREKVKGVE-IRKTIEALD-QLKG- 299
+ GI V TLY LD + G+ P Y F++ ++ ++ + + ++D + G
Sbjct: 119 SEMGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECIDPPERAVPSIDKEFLGN 178
Query: 300 --LPSRGDV-EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
P + D E +P+L +LG + +++ + GGETEAL RL K F
Sbjct: 179 AFTPIKYDHDEIFGVPTLEELGFKEINNITR------HVWVGGETEALIRLQCHLERKAF 232
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A + PK S G ++P+L GCLS R F EL + I +
Sbjct: 233 IASFGK--PKMTPQSLVASPTG------LAPYLKFGCLSTRLFFSELNELYKKIRKS--- 281
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ S G +LLWRDFF
Sbjct: 282 ---QPPLSLHG------QLLWRDFF 297
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 140/313 (44%), Gaps = 32/313 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A S V+ +C DP G + D P R ++++ V+
Sbjct: 6 LFWHRRDLRISDNLGLAAARERSPKVVGFFCLDP---GILEA--DDVAPARVAYMLGCVA 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ QA GS+L++ G P + + A +GA AVY +R+V + + + AA+ ++
Sbjct: 61 QLQERYQAVGSELLILKGNPVEQIPQTASTLGAMAVYWNRDVEPYSRQRDNAVAAALTEK 120
Query: 247 GIEVKY-FWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL--PSR 303
GIE++ W L+ D+ G+ T YG F + + L GL R
Sbjct: 121 GIEMRTKTWDQLLHAPGDVLTGAGKPYTVYGPFWRNWQNLVKLPPAATLQGAVGLSDAER 180
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
G V+ +PS LG + +A + ++ GE A +L+ F ++
Sbjct: 181 GLVDEIALPSAKALGFTWAAPL---------PLEPGERAARAQLEFFG---HKAIEAYDE 228
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
N ++ G + +S L G + R E+ +TA + A ++G +
Sbjct: 229 QRNFPAVTGTSL---LSAALKFGAVGMR----EVWQTAMTAYDACNSDEGRTNV----QT 277
Query: 424 WLMFELLWRDFFR 436
W M EL WR+F++
Sbjct: 278 W-MKELAWREFYQ 289
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 137/327 (41%), Gaps = 39/327 (11%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
N +++ + I W R DLRV DN L+ A S ++ ++C D + D P R
Sbjct: 39 NLSSMTNSVIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLDTDILNQ-----DNVAPAR 93
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
++++ + DLR++ Q G L++ G P ++ ++A A+ D V+ + +V K +
Sbjct: 94 ITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDN 153
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN-YGGFREKVKGVEIRKTIEALDQ 296
++ A+++ GI + +W L+ D+ K P Y F E +AL +
Sbjct: 154 QVIEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGK 213
Query: 297 LKGLPSR-----GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
L+ L ++ D+P+ DLG S A + ++ GET A ++L F
Sbjct: 214 LESLSEEEINTVKNLGIIDLPTAKDLGYSWDAPL---------ILEPGETAAKEQLNYFC 264
Query: 352 AE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
Y Q + G N + +SP G + R ++ + S
Sbjct: 265 DSLIYNYQEQRNYP--------GINGTSTLSPAFKFGVIGIREVWQ---------ATLSA 307
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFFR 436
+ + S + E+ WR+F++
Sbjct: 308 YENTYSDEARENIQTWQQEIAWREFYQ 334
>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
Length = 541
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 128/317 (40%), Gaps = 33/317 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI W R LR+HDN +L A + VY D + S+ G + FL++++
Sbjct: 23 SIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVASSNIGLN-----LWRFLLQAL 77
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L + G + + + + I ++
Sbjct: 78 EDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLARE 137
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVE-----IRKTIEALDQLKG 299
G+EV TLYHL + + G P Y F ++G+ + + +L
Sbjct: 138 AGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQELGH 197
Query: 300 LP-SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P S E +P++ +LGL S K GGETEAL+RL +
Sbjct: 198 TPLSDNHDELYGVPTMEELGLETS-------KLFVEVWHGGETEALKRLDRHLERKAWIA 250
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
G DS+ + +SP+L GCLSPR + L + G +S
Sbjct: 251 SFGKPKVTSDSLMAS--PSGVSPYLRFGCLSPRLFYYRLMDLYRKVKG------GPPPTS 302
Query: 419 GAGSNWLMFELLWRDFF 435
G +LLWR+FF
Sbjct: 303 LYG------QLLWREFF 313
>gi|307105009|gb|EFN53260.1| hypothetical protein CHLNCDRAFT_137186 [Chlorella variabilis]
Length = 204
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 93/204 (45%), Gaps = 58/204 (28%)
Query: 233 VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE 292
VK E +I A G E+ +TL LD LPF L ++P N+ FR++++GV+ R+
Sbjct: 31 VKEERRI--AFAANGSELLLV--NTLCRLDCLPFSLDQLPQNFDKFRQRIEGVQQRR--- 83
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
G +P +GGE EAL++L++F A
Sbjct: 84 -----------------------------------GRQP-----QGGEGEALRQLQRFVA 103
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
A + YG+NFS I+PWLA GCLSPR M ++ ++ + +AA
Sbjct: 104 AASA----------LGAAYGSNFSSNIAPWLATGCLSPRRMLEDARRALAAPTAAGA-TP 152
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
S A +W+ EL WRDFFR
Sbjct: 153 AASRQLQAPLDWVRCELYWRDFFR 176
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 137/327 (41%), Gaps = 39/327 (11%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
N +++ + I W R DLRV DN L+ A S ++ ++C D + D P R
Sbjct: 39 NLSSMTNSVIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLDTDILNQ-----DNVAPAR 93
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
++++ + DLR++ Q G L++ G P ++ ++A A+ D V+ + +V K +
Sbjct: 94 ITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDN 153
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN-YGGFREKVKGVEIRKTIEALDQ 296
++ A+++ GI + +W L+ D+ K P Y F E +AL +
Sbjct: 154 QVIEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGK 213
Query: 297 LKGLPSR-----GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
L+ L ++ D+P+ DLG S A + ++ GET A ++L F
Sbjct: 214 LESLSEEEINTVKNLGIIDLPTAKDLGYSWDAPL---------ILEPGETAAKEQLNYFC 264
Query: 352 AE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
Y Q + G N + +SP G + R ++ + S
Sbjct: 265 DSLIYNYQEQRNYP--------GINGTSTLSPAFKFGVIGIREVWQ---------ATLSA 307
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFFR 436
+ + S + E+ WR+F++
Sbjct: 308 YENTYSDEARENIQTWQQEIAWREFYQ 334
>gi|421506155|ref|ZP_15953086.1| deoxyribodipyrimidine photolyase [Pseudomonas mendocina DLHK]
gi|400343105|gb|EJO91484.1| deoxyribodipyrimidine photolyase [Pseudomonas mendocina DLHK]
Length = 477
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 141/320 (44%), Gaps = 46/320 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR+DLR+ DN +LN A + S + +Y P + + P + F + +++
Sbjct: 4 LMWFRSDLRIDDNTALNQAMSRG-STIALYLVTPGQWQRHDD-----APCKVDFWLRNLA 57
Query: 187 DLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L + L A L++R + V+ E+ AV+A+ E +E + + A
Sbjct: 58 QLSRALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAY 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ + I W S HLD L FK G + T GG+ + + + V AL L
Sbjct: 118 LAQQDIA----WHS---HLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVA 170
Query: 300 LPSRGDVEP---GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
P P IP +D G + + + PA GE A QRL++FA E Q
Sbjct: 171 RPVAQAPTPLASDAIPHAVD-GFAMPSEQLRSLWPA------GEEAARQRLERFADE-QI 222
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
K +D ++ G + ++SP+LA G LSPR + AA N GE
Sbjct: 223 GYYKDERD--FPALPG---TSQLSPYLAAGVLSPRQ----------CLHAALAANRGEFD 267
Query: 417 SSGAGSNWLMFELLWRDFFR 436
S AG + ELLWR+F++
Sbjct: 268 SGNAGVVTWVNELLWREFYK 287
>gi|410926431|ref|XP_003976682.1| PREDICTED: cryptochrome-2-like [Takifugu rubripes]
Length = 718
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 138/317 (43%), Gaps = 32/317 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + S+ +Y DP G ++ G + R FL+E++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADSLRCIYILDPWFAGAANVGIN-----RWRFLLEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L+V G+P V L K + + + + I +
Sbjct: 60 EDLDCSLRKLSSRLLVVRGQPTDVFPRLLKDWKVTRLTFEFDPEPYGKERDGAIIKLAQQ 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQLK 298
G+E TLY+LD + P + F+ V +E+ + T + +
Sbjct: 120 FGVETIVRNSHTLYNLDRIIEVNNNSPPLTFKRFQTIVSRLELPRRPLPTVTQHQIHKCG 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+ + IPSL +LG ++G PA +GGE+EAL+RL K +
Sbjct: 180 AKMADSQEQLYSIPSLEELGFR-----TEGLPPAV--WRGGESEALERLHKHLDKKVWVA 232
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+ + S+Y + +SP+L GCLS R ++ L++ + G S
Sbjct: 233 NLEHSRVSTCSLYAS--PAGLSPYLRFGCLSCRVLYYNLRELYVKL---------RKGCS 281
Query: 419 GAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 282 PPPS--LFGQLLWREFF 296
>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
Length = 623
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 135/323 (41%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + +V VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIQGAHTVRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNITRLSYEYDSEPFGKERDAAIKKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQLK 298
G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGTCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S E +PSL +LG + +S P GGETEAL RL K + A
Sbjct: 180 TPVSDDHDEKFGVPSLEELGFD-TEGLSSAVWP------GGETEALTRLERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS + + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCQLFYFKL----TDLYRKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 125/284 (44%), Gaps = 22/284 (7%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR+ DN +L A ++ +Y D S+G + G +L S+
Sbjct: 5 AVVWFRNDLRLADNPALTAAARSGAPIIALYVLD-----DESAGEWRMGSASRWWLHHSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L +L G L +R G+ E VL + GA AVY +R ++ + +I++ ++
Sbjct: 60 TALAHDLARLGVTLTLRRGRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLRA 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT-IEALDQLKGLPSRG 304
G+ V+ F GS L+ L K GE + F E + A +L P
Sbjct: 120 RGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLAAEAPDAPLPAPKKLTAAP--- 176
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
P +L D L + GG + + GE AL+RL +FA K +D
Sbjct: 177 ---PPASDALADWRLLPTKPDWAGG--LRETWRAGEHAALERLAEFAK-------KRVRD 224
Query: 365 GNHDSIYGANFSC-KISPWLAMGCLSPRSMFDELKKTATSISAA 407
D + A ++SP L G +SPR ++ E+ + A AA
Sbjct: 225 YKIDRDFMAREGVSRMSPHLHFGEVSPRRIWAEITEAAGDAGAA 268
>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
Length = 533
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 140/321 (43%), Gaps = 39/321 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFRN LR+HDN +L A S +V P+Y DP D K+ + G R F++ES+
Sbjct: 9 TVHWFRNGLRLHDNPALKEAFETSQTVRPLYVLDP-DVLKNGN----IGVVRWRFILESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL NL+ S L V G+P V +L K + + + K + ++
Sbjct: 64 ADLDNNLKKLNSRLFVVRGRPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIANK 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV--------EIRKTIEALDQ 296
G++++ TLY LD + K G P Y F+ V + I K + A
Sbjct: 124 LGVDIEQRVSHTLYDLDRIVNKNGGTAPLTYKKFQSIVSSLGPPAAPLPAIDKKMVAGCN 183
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA--EY 354
+ + +P+L ++G + P GGETEAL+RL+ + ++
Sbjct: 184 TPTTANHDKIY--GVPTLEEIGQEVPEESREVLYP------GGETEALERLEVYMKKEDW 235
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ K N N SI + + +SP++ GCLS R + L + A K +
Sbjct: 236 VCKFEKPNTAPN--SIEPS--TTVLSPYMTYGCLSARLFYTRLAEI-----YAKKKKHSQ 286
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
S G +LLWR+FF
Sbjct: 287 PPVSLHG------QLLWREFF 301
>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
Length = 556
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 137/319 (42%), Gaps = 45/319 (14%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FR LR+HDN +L A S + PVY D +++ SSS G R +FL++S+ DL
Sbjct: 9 FRKGLRLHDNPTLVAALETSDIIYPVYILD-KNFMTSSS---VIGSKRWNFLLQSIEDLH 64
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
NLQ S L V G ++VL E + V E+ +E+I A ++ G +
Sbjct: 65 CNLQKLNSCLFVIQGDYQSVLREHVQKWHITQVTFDLEIEPYYKGMDERIRAMGQELGFD 124
Query: 250 VKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV------EIRKTIEALDQLKGLPS 302
V TLY + L G+ P Y F + + + T+E +
Sbjct: 125 VVSKVAHTLYDVKSILALNYGKPPLTYKNFLRVLSVLGDPDKPARQITLEDFIKCTTPTE 184
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK------FAAEYQA 356
E IP DLG+ + A + KGGE+EAL RL++ + A +Q
Sbjct: 185 FAAEEYYRIPKPEDLGICRD---------CAPNWKGGESEALCRLEQHLEKQGWVANFQK 235
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
P+ + S G +SP+ + GCLS R + L ++I A SK N
Sbjct: 236 --PQTVPNSLLPSTTG------LSPYFSFGCLSARVFYHRL----SNIYAQSK-NHSLPP 282
Query: 417 SSGAGSNWLMFELLWRDFF 435
S G +LLWR+FF
Sbjct: 283 VSLQG------QLLWREFF 295
>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
gi|81882230|sp|P97784.1|CRY1_MOUSE RecName: Full=Cryptochrome-1
gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
Length = 606
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 GKCMTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
Length = 606
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 138/323 (42%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + ++ VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + I +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
G+EV TLY LD + F G+ P Y F+ ++ VE+ T E + +
Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIMGKCS 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S + +PSL +LG ++ +S P GGETEAL RL K + A
Sbjct: 180 TPVSDDHDDKFGVPSLEELGF-ETEGLSTAVWP------GGETEALTRLERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S S L +LLWR+FF
Sbjct: 281 TPSLS-------LYGQLLWREFF 296
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
Length = 961
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 132/319 (41%), Gaps = 33/319 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN +L + + V+ DP G S+ G +K +R FL++
Sbjct: 4 KHTVHWFRKGLRLHDNPALREGLRGARTFRCVFIIDPWFAGSSNVGINK---WR--FLLQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +NL+ S L V G+P L +L K G + + + I
Sbjct: 59 CLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
K+ GIEV TLY+L+ + K G P Y F+ + ++ EA L + +
Sbjct: 119 KELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGN 178
Query: 303 RGDVEPGD------IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
+ D +P+L +LG A +P GGETEAL RL++
Sbjct: 179 ANTPQYDDHDDKYGVPTLEELGFETEAL-----RPPV--WIGGETEALARLERHLERKAW 231
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
G S+ + +SP+L GCLS R + +L I A
Sbjct: 232 VASFGRPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKACP------- 282
Query: 417 SSGAGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 283 -----PLSLHGQLLWREFF 296
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST]
gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST]
Length = 1056
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 132/319 (41%), Gaps = 33/319 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN +L + + V+ DP G S+ G +K +R FL++
Sbjct: 99 KHTVHWFRKGLRLHDNPALREGLRGARTFRCVFIIDPWFAGSSNVGINK---WR--FLLQ 153
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +NL+ S L V G+P L +L K G + + + I
Sbjct: 154 CLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMC 213
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
K+ GIEV TLY+L+ + K G P Y F+ + ++ EA L + +
Sbjct: 214 KELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGN 273
Query: 303 RGDVEPGD------IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
+ D +P+L +LG A +P GGETEAL RL++
Sbjct: 274 ANTPQYDDHDDKYGVPTLEELGFETEAL-----RPPV--WIGGETEALARLERHLERKAW 326
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
G S+ + +SP+L GCLS R + +L I A
Sbjct: 327 VASFGRPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKACP------- 377
Query: 417 SSGAGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 378 -----PLSLHGQLLWREFF 391
>gi|398952323|ref|ZP_10674712.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM33]
gi|398155251|gb|EJM43701.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM33]
Length = 480
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 40/317 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A V VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAAARGPCV-AVYLLSPEQWLEHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R +VL+ L + DA++ + E E + + + A
Sbjct: 57 ELSRELGHLNIPLLIRQAPRWDDAPSVLLNLCRQWQVDALHLNDEYGIHESRRDAAVARA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ EGIEV + LD L FK G + T G + + + + V + +L L
Sbjct: 117 LQAEGIEVHRY-------LDQLLFKPGSVLTRTGTYFQVFSQFRKVCYERLHHSLPGLVR 169
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P + P +I S D + G P ++ GETEA +RL F+ +AQ
Sbjct: 170 APHKQ--APLNIAS--DAVPLSVEGFATPGDPLSSLWPAGETEARRRLDSFS---EAQID 222
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ + + G + ++S +LA G +SPR + AA N GE S
Sbjct: 223 HYQNERDFPAKPG---TSQLSAYLAAGVISPRQ----------CLHAALNSNQGEFESGN 269
Query: 420 AGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 270 TGAVTWINELLWREFYK 286
>gi|410615191|ref|ZP_11326217.1| cryptochrome DASH [Glaciecola psychrophila 170]
gi|410165275|dbj|GAC40106.1| cryptochrome DASH [Glaciecola psychrophila 170]
Length = 421
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 149/327 (45%), Gaps = 70/327 (21%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG---FDKTGPYRASFLIE 183
+ WFR+DLR+ DN + N E V VL C + Y K G T + +F +
Sbjct: 9 LYWFRHDLRLIDNPTFNQLC-EQVDVLI--CVYVQGYTKELQGSFCVGNTSKLKETFEHQ 65
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKA-----IGAD---AVYAHREVSHDEVKS 235
SV L +L+ + L+ + L +L G+D VY
Sbjct: 66 SVLALDADLRHKNQYLLFLDTPSHSALYDLVHKYKVTHFGSDWHPGVY------------ 113
Query: 236 EEKIEAAMKDEGIEVKYF--WGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
E+K A+ ++ +VK+ G +L+ DLPF+L ++P ++ FR++V+ + I +EA
Sbjct: 114 EQKSLQALHNDCPQVKFISETGYSLFSRTDLPFELEDLPKSFTPFRKQVESLTIDAPVEA 173
Query: 294 LDQLKGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK--F 350
L LK LPS +EP ++P L +++G + GGE A +L K F
Sbjct: 174 L--LK-LPSA--IEPSPEVPQQL---------LTKG------VVTGGEKAATAQLNKYLF 213
Query: 351 AAEYQAQPPKG-NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
+ Q + N + DS S K+S WLA GCLS R+++ +K+ A
Sbjct: 214 GTDLIRQYKQTRNALDDWDS------SSKLSLWLANGCLSVRTVYHTIKQYEVQRGA--- 264
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFFR 436
ND + WL FELLWR++F+
Sbjct: 265 -ND--------STYWLYFELLWREYFQ 282
>gi|399220399|gb|AFP33463.1| cryptochrome 2 [Dicentrarchus labrax]
Length = 668
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 137/323 (42%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G SS G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALQEAIRGAGTVRCVYFLDPWFAGSSSVGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEAL-DQLKGLP- 301
G+EV TLY LD + + P Y F+ + ++ + +E L D L G
Sbjct: 120 AGVEVIVKTSHTLYDLDKIIELNGAQPPLTYKRFQTLISRLDPPEMPVETLSDTLMGRCV 179
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S + +PSL +LG G P A GGETEAL R+ K + A
Sbjct: 180 TPISEDHGDKYGVPSLEELGFDIE------GLPTA-VWPGGETEALTRIERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + +L T + K N
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
Length = 540
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 149/337 (44%), Gaps = 56/337 (16%)
Query: 122 IRRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTG 174
++R+++V WFR LRVHDN +L+ +A N + V P++ DP + + G
Sbjct: 3 VKRSTLVHWFRKGLRVHDNPALSHIFSAANAAPGKYFVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL L+ GS L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQALEDLDNQLRKLGSRLFVVRGKPAEVFPRIFKSWRVEILTFETDIEPYSLS 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K G++V+ T+Y+ + + K LG+ P Y F V+ +++ K + A
Sbjct: 118 RDASVQKLAKAAGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGA 177
Query: 294 LDQLKGL--PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
++L+ + P +VE D + + Q + P N GGETEAL+R+
Sbjct: 178 PEKLQNITTPPNDEVEQEDSAAYDCPTMEQLVKRPEELGP--NKFPGGETEALRRM---- 231
Query: 352 AEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELK 398
+D D ++ A F + +SP+L GCLS R +LK
Sbjct: 232 -----------EDSLKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLK 280
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ S + S L+ +L+WR+F+
Sbjct: 281 EIIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|390339199|ref|XP_788938.2| PREDICTED: cryptochrome-2-like [Strongylocentrotus purpuratus]
Length = 524
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 144/326 (44%), Gaps = 48/326 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++I WFR LR+HDN +L TA + P++ DP + +S +K G R FL+E+
Sbjct: 5 STIHWFRKGLRIHDNPALLTAIQGTKVFRPIFILDPH-FIES----EKVGINRWRFLLET 59
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS-HDEVKSEEKIEAAM 243
+ DL + +A G+ L V G P TV E+ K + + + + +E IE A
Sbjct: 60 LQDLDYSFRALGTRLFVVRGNPTTVFPEIFKKWNVTRLTFEVDTEPYARRRDQEVIELAK 119
Query: 244 KDEGIEVKYFWGSTLYHLD-DLPFKLGEMPTNYG---GFREKVKGVEIRKTIEALDQLKG 299
K++ +EV TLY + + + P Y G ++ I + + G
Sbjct: 120 KND-VEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPLMANFTG 178
Query: 300 LPS----RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KK 349
+ + D E G +PSL DLGL +G P GGETE LQR+ K
Sbjct: 179 VATPVKPDHDNEYG-VPSLEDLGLDL-----EGLGP--RLYPGGETEGLQRMDLHLARKS 230
Query: 350 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
+ ++ PK + + S + +SP+L GCLSPR + +K+ + +K
Sbjct: 231 WVCGFEK--PKTSPNSLEPS------TTVLSPYLKWGCLSPRKFYYAIKEVYAQQTNCTK 282
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFF 435
LM +L+WR+FF
Sbjct: 283 -----------PPVSLMGQLIWREFF 297
>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340782929|ref|YP_004749536.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340557080|gb|AEK58834.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 476
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 138/319 (43%), Gaps = 54/319 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRD-YGKSSSGFDKTGPYRASFLIES 184
+IV FRNDLR+ D+ +L A VLPVY D YG + + ES
Sbjct: 6 TIVLFRNDLRLADHPALWYAAQRG-PVLPVYLRHAADSYGSAWRWWHG----------ES 54
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L+ L RG L++R G + VL E+ +A GADAVY +R D + ++++++ K
Sbjct: 55 LLKLQAALAQRGLPLLLRSGTAKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKSLFK 114
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-EALDQLKGLPSR 303
+ G+E + F G+ L P++ Y F K + R + L + + +
Sbjct: 115 ELGVEARSFPGNLLVE----PWEHLREGQPYRVFTPFWKAMLARHRFPQPLAEPESYRA- 169
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKP--------AANSMKGGETEALQRLKKFAAEYQ 355
P IP+ DL G P A + GE A +RL+ F E
Sbjct: 170 ----PTAIPASEDLA-------RWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGL 218
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
A +G ++ G F ++SP+LA G +SPR ++ L + A E
Sbjct: 219 AHYAEGR------NLPGKPFVSRLSPYLAHGEISPRQIWWHLSRLAE-----------EQ 261
Query: 416 GSSGAGSNWLMFELLWRDF 434
G+ + + EL WR+F
Sbjct: 262 GAWRRNVDAFLRELGWREF 280
>gi|170780895|ref|YP_001709227.1| deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
michiganensis subsp. sepedonicus]
Length = 508
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 145/330 (43%), Gaps = 42/330 (12%)
Query: 116 PNNGAAIRRA-------SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS 168
P++G+A R +IVW R+DLRV DN +++ A ++ +Y D + S+
Sbjct: 7 PDHGSADREGADQAHGPTIVWLRDDLRVADNPAMHAAVERGEPIVVLYVLD-----EESA 61
Query: 169 GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREV 228
G G +L S+S L ++L+ GS LV+R GK V+ +L + +GA AV +R
Sbjct: 62 GIRPLGGAARWWLHMSLSRLGESLRGLGSPLVLRRGKAADVVDDLVREVGAGAVLWNRRY 121
Query: 229 SHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI- 287
E+ + I+ + D G++V+ F GS L + K GE Y F + + E
Sbjct: 122 GGAEIAVDTAIKKDLGDRGLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDREEP 181
Query: 288 RKTIEALDQLKG---LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEAL 344
RK A D L+ P D+ D LL +A + + P GE L
Sbjct: 182 RKPFPAPDALEAPRKAPRSDDL---DDWGLLPTKPDWAAGLREACDP-------GEAAGL 231
Query: 345 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 404
QRL+ F ++ + +D A + ++S +L G +SP ++ +++T
Sbjct: 232 QRLEDF-VHHELEDYAAQRDEP-----AAMTTSRLSAYLRWGEVSPFQVWHRVQRTRGK- 284
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDF 434
+ G + + EL WR+F
Sbjct: 285 ---------KVGGDEVNATKFLSELGWREF 305
>gi|440895552|gb|ELR47705.1| Cryptochrome-2, partial [Bos grunniens mutus]
Length = 564
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 137/315 (43%), Gaps = 44/315 (13%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
LR+HDN +L A + V VY DP SS G + R FL++S+ DL ++L+
Sbjct: 3 LRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGIN-----RWRFLLQSLEDLDRSLR 57
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
S L V G+P V L + G + + + + I K+ G+EV
Sbjct: 58 KLNSRLFVVRGQPADVFPRLFQEWGVTRLTFEYDSEPFGKERDTAIMKMAKEAGVEVVTE 117
Query: 254 WGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRGDV----- 306
TLY LD + G+ P Y F+ + +E+ RK + ++ + R ++
Sbjct: 118 NSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCRAEIQESHD 177
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAAEYQAQPPK 360
E +PSL +LG ++G PA +GGETEAL RL K + A Y+ P+
Sbjct: 178 ETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWVANYER--PR 228
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
N + S G +SP+L GCLS R + L + K N S
Sbjct: 229 MNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRNSTPPLS--- 275
Query: 421 GSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 276 ----LFGQLLWREFF 286
>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
Length = 655
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 143/330 (43%), Gaps = 58/330 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALQEAVRGADTVRCVYFLDPWFAGSSNLGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 DDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEAL-DQLKGLPS 302
G+EV TLY+LD + G+ P Y F+ + ++ + +E L + + G
Sbjct: 120 AGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGCCV 179
Query: 303 RGDVEP-GD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
E GD +PSL +LG G P+A GGETEAL R+ K + A
Sbjct: 180 TPVAEDHGDKYGVPSLEELGFDIE------GLPSA-VWPGGETEALTRIERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR-------SMFDELKKTATSIS 405
++ P+ N + S G +SP+L GCLS R ++ ++KKT+T
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPL 284
Query: 406 AASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ L +LLWR+FF
Sbjct: 285 S------------------LYGQLLWREFF 296
>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 142/325 (43%), Gaps = 48/325 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + ++ VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + I +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI-RKTIEALDQLKGL 300
G+EV TLY LD + F G+ P Y F+ ++ VE+ +TI A ++ G
Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITA--EIMGK 177
Query: 301 PSRGDVEPGD----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
S + D +PSL +LG ++ +S P GGETEAL RL K +
Sbjct: 178 CSTPVSDDHDNKFGVPSLEELGF-ETEGLSTAVWP------GGETEALTRLERHLERKAW 230
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 231 VANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKK 278
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
N S S L +LLWR+FF
Sbjct: 279 NSTPSLS-------LYGQLLWREFF 296
>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 142/325 (43%), Gaps = 48/325 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + ++ VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + I +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI-RKTIEALDQLKGL 300
G+EV TLY LD + F G+ P Y F+ ++ VE+ +TI A ++ G
Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITA--EIMGK 177
Query: 301 PSRGDVEPGD----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
S + D +PSL +LG ++ +S P GGETEAL RL K +
Sbjct: 178 CSTPVSDDHDNKFGVPSLEELGF-ETEGLSTAVWP------GGETEALTRLERHLERKAW 230
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 231 VANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVKK 278
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
N S S L +LLWR+FF
Sbjct: 279 NSTPSLS-------LYGQLLWREFF 296
>gi|410089563|ref|ZP_11286177.1| deoxyribodipyrimidine photolyase [Pseudomonas viridiflava
UASWS0038]
gi|409763098|gb|EKN48083.1| deoxyribodipyrimidine photolyase [Pseudomonas viridiflava
UASWS0038]
Length = 482
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 40/317 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLRVHDN +L+ A E L VY + +S D + F + ++
Sbjct: 3 LLWLRTDLRVHDNTALSAA-MERGPTLAVYLISSAQW-QSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K L L++R K VL +L K +AV+A+ E +E + +E ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDKAPEVLSKLCKQFKIEAVHANEEYGINETRRDEAVQKT 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++D G+ + HLD L FK G + T G + + + K V + EA+ +
Sbjct: 117 LEDAGVHFQ-------SHLDQLLFKPGSVLTKTGNYFQVFSQFKKVCYSRLHEAMPRTVR 169
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P D +P+ D S + N GE EA +RL +F + Q
Sbjct: 170 TPKPQD----SLPTKSDAIPEAVKGFSAPSEALRNLWPAGEDEAHRRLSEFTDD-QIHYY 224
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K +D + + ++S +LA G +SPR + AA N GE +
Sbjct: 225 KTERD-----LPAKPGTSQLSAYLAAGVVSPRQ----------CLHAALTSNHGEFETGS 269
Query: 420 AGSNWLMFELLWRDFFR 436
GS + ELLWR+F++
Sbjct: 270 EGSVTWINELLWREFYK 286
>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
Length = 481
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 138/318 (43%), Gaps = 45/318 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFR DLR+ DN +L+ A E ++P++ FD + G G F++ +
Sbjct: 4 LVWFRRDLRLSDNPALSAACQECREIVPLFVFDEPLLRSHAFGSACVG-----FMLGCLE 58
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L G L R+G P +++ A DAVY +R+ ++ + +++ + +
Sbjct: 59 ELRRSLALHGVSLAWRMGDPVESVLQAADDFKVDAVYWNRDYEPAALERDREVQQRLAQQ 118
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G V+ F ++ +++ G+ Y +R++ + R L + P G
Sbjct: 119 GRTVRTFKDHVVFEAEEVRGLSGDPFQRYSAYRDRW-WTKWRAAAPPLLGIPSFPPAGKA 177
Query: 307 EPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
D PS+ DLG + G+ AA++ RL+ F +
Sbjct: 178 STPDSRKWPSVTDLGYESVPMWIEPGEQAAHA----------RLQWFL-----------R 216
Query: 364 DGNHDSIYGANF-----SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
H + G N + K+SP L G +S R++ +++A +K G + S
Sbjct: 217 GPVHQYVTGRNLPAIDGTSKLSPHLRFGTVSARTL------VHAALNALAK---GGAVSR 267
Query: 419 GAGSNWLMFELLWRDFFR 436
W+ EL+WR+FF+
Sbjct: 268 ADVFTWVD-ELVWREFFQ 284
>gi|393764280|ref|ZP_10352892.1| deoxyribodipyrimidine photolyase [Alishewanella agri BL06]
gi|392604910|gb|EIW87809.1| deoxyribodipyrimidine photolyase [Alishewanella agri BL06]
Length = 452
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 146/315 (46%), Gaps = 37/315 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+V LRV DN L+ A ++ +++ + D + Y G ++ R ++++
Sbjct: 3 SLVLLNGCLRVDDNPLLSQARGKAAALVII---DQQAYFGRQYGLFRSNLLRLRAHLQAI 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L + L R L++R G + L ELA +GA+ + A + DE ++ + + A++K
Sbjct: 60 QHLAQQLAQRQIGLIIRFGDTHSQLCELALKLGAEQLLASEPTAPDEYRALQHLPASVKL 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ I+ G++L P L + + FR+K++ + + E + +
Sbjct: 120 QLID-----GNSLLSQQLRP-DLATLSDRFTSFRKKLEPLLLVTAAEP----EHTRAANW 169
Query: 306 VEPGDIPSLLDLGLSQSAAMSQG-GKPAANSMKGG---ETEALQRLKKFAAEYQAQPPKG 361
+ P + GLSQ + + Q G+ AA S + G E A RL F +Q Q
Sbjct: 170 LSPDQVA-----GLSQQSVLQQWLGQTAATSWREGCWDEGSAHARLHYFI--WQGQHILH 222
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
KD + +++ G +++ S L++G LS R + ++++ + A ND
Sbjct: 223 YKD-SRNALCGTDYASFFSTPLSLGTLSVRRCWQQIEQFEQQVKA----ND--------S 269
Query: 422 SNWLMFELLWRDFFR 436
+ WL FELLWR+FFR
Sbjct: 270 TYWLKFELLWREFFR 284
>gi|398904477|ref|ZP_10652320.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM50]
gi|398175856|gb|EJM63596.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM50]
Length = 482
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 145/321 (45%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A SV VY P+ + K F + ++S
Sbjct: 3 LIWLRSDLRLHDNTALSAAAARGPSV-AVYLLSPQQWLAHDDASCKV-----DFWLRNLS 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+LR L A L++R + VL+EL + + DAV+ + E E + + + A
Sbjct: 57 ELRHALGALNIPLLIRKASRWDEAPKVLLELCQQLKIDAVHVNEEYGIHETRRDAAVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +GI+ + LD L FK G + T G + + + + V + +L +L
Sbjct: 117 LKAQGIDFYRY-------LDQLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPRLVT 169
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK----GGETEALQRLKKFAAEYQ 355
P+ I + L + + + +G ++S++ GE EA +RL+ F
Sbjct: 170 APA--------IQAPLGIASDEPPSRVEGFDTPSDSLRALWPAGEAEARRRLETFT---D 218
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
AQ + + + + G + ++S ++ G +SPR + AA + N GE
Sbjct: 219 AQIDYYHSERDFPAKPG---TSQLSAYITAGVISPRQ----------CLHAALQSNQGEF 265
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
S G+ + ELLWR+F++
Sbjct: 266 ESGKVGAVTWINELLWREFYK 286
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
Length = 532
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 145/332 (43%), Gaps = 43/332 (12%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNES------VSVLPVYCFDPRDYGKSSSGFDKT 173
A RR I WFR LRVHDN +L N++ SV P++ DP + K
Sbjct: 2 AVERRTLIHWFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDP-----GILDWMKV 56
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G R FL +S+ DL KNL+ S L + GKP + L + + ++ V
Sbjct: 57 GANRWRFLQQSLLDLDKNLKELNSRLYIVRGKPVDIFPNLFDRWNVELLTFETDIEPYAV 116
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIE 292
K ++ ++ G++V T+Y+ + + K G P Y F V+ +++ K
Sbjct: 117 KRDKAVQDIAAAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKV-- 174
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLS---QSAAMSQGGKP----AANSMKGGETEALQ 345
LD+ + LP+ V+P I L++G S + + Q K N GGE EAL+
Sbjct: 175 -LDKPQRLPN--GVQP--IADELEMGQSDVYECPTLDQLVKRPQELGINKFPGGEREALR 229
Query: 346 RLKKFAAE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 403
RL ++ + A K N N S+ + + +SP+L GCLS R + L +
Sbjct: 230 RLDTSLSDEHWVASFEKPNTAPN--SLEPS--TTVLSPYLKFGCLSARLVHQRLHEILKR 285
Query: 404 ISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
SK S G +LLWR+F+
Sbjct: 286 HPKHSK-----PPVSLVG------QLLWREFY 306
>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 472
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 130/280 (46%), Gaps = 33/280 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR DLR+ DN +L+ A VLPVY FD G S G +L S++
Sbjct: 8 IVWFRRDLRLADNPALSEALASGEPVLPVYVFDEEGEGDSPDGAASKW-----WLHHSLA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L+ GS LV+ G ++ LVEL + +GA AV+ +R V+ + +I+ ++ D
Sbjct: 63 SLDESLKGLGSRLVLLRGSSKSALVELCREMGARAVFWNRRYEPAVVERDTEIKKSLVDC 122
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI---EALDQLKGLPSR 303
G++ + F GS + + K G + F + ++ + R + +AL K LP
Sbjct: 123 GVQARSFNGSLMQSPLSVANKSGTPFKVFTPFWKHIQNLSTRTPLAKPDALTTPKSLPKG 182
Query: 304 GDVEPGDIPSLLDL--GLSQSAAMSQGGKPAANSM--KGGETEALQRLKKFAAEYQAQPP 359
+E ++ L G ++ + G A S+ KGG AA+Y
Sbjct: 183 ESLESFELLPRLSWADGFNEEWIPGEKGAEKALSLFAKGG-----------AAKYA---- 227
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 399
KD + S+ G + ++SP L G +SP ++ L +
Sbjct: 228 ---KDRDTPSVRGVS---RLSPHLHFGEISPNQIWHALDR 261
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 124/279 (44%), Gaps = 39/279 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS---FLIE 183
++WFR DLR+ DN +L +A S ++PVY +P G + GP + +L
Sbjct: 12 LLWFRKDLRLDDNHALQSAATSSRPLIPVYIREP--------GVTERGPLGGAQEWWLHY 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L+ L A GS L++R G+ TVL +L K GA+AV +R V+ + +I+ A+
Sbjct: 64 SLAALQIALDAVGSKLILRHGEALTVLEKLVKETGAEAVVWNRRYDPAGVEVDTQIKKAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPS 302
+ +GIE F G L+ L G Y F R + E IEA +L
Sbjct: 124 RSKGIEANSFAGQLLHEPTRLRTGTGNHYKTYTPFWRAFEQSGEPPFPIEAPRRL----- 178
Query: 303 RGDVEPGDIPSLLDL-GLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ PG P L S A A+ GE AL +LK F
Sbjct: 179 ---LAPGRWPQSDSLDAWSLLPAKPNWASEFADIWTPGEAAALDKLKDFV---------- 225
Query: 362 NKDGN-HDSIYGANFSCK-----ISPWLAMGCLSPRSMF 394
DG +D G +F K +SP LA+G +SP M+
Sbjct: 226 --DGALNDYAIGRDFPDKPATSLLSPHLALGEISPARMW 262
>gi|440731048|ref|ZP_20911095.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
gi|440375449|gb|ELQ12158.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
Length = 473
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR DLR+HD+ +L+ A + +PVY P D G S+G S+L ++
Sbjct: 4 AIVWFRRDLRLHDHPALHAALAAGHTPVPVYVHSPGDEGAWSAGAASL-----SWLQRAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L LQARGS L++R G ETVL EL +A GA AVY +R + K++ +++
Sbjct: 59 AALDAQLQARGSRLILRQGPAETVLRELIQACGAVAVYWNRRYEPATQPRDAKLKRELRE 118
Query: 246 EGIEVKYF 253
+G++V +
Sbjct: 119 QGLDVHSY 126
>gi|434387598|ref|YP_007098209.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018588|gb|AFY94682.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 478
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 135/320 (42%), Gaps = 44/320 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLRV D+ L A N + V+ V+CFD ++ D P R ++L+ +
Sbjct: 6 LFWHRRDLRVSDSIGLAQACNTNARVIGVFCFD-----RAILTNDSVAPARVTYLVGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L K+ + GS L+ G P + LA + A AVY H ++ +E I +K +
Sbjct: 61 SLAKDYRRAGSQLLFVEGNPVVKIPLLATTLKAQAVYWHLDIEPYSQTRDESIATTLKSD 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF------REKVKGVEIRKTIEALDQLKGL 300
GIEV W L+ ++ + T Y F R K VE++ LD + L
Sbjct: 121 GIEVHTNWDQLLHAPSEIITGNKQPYTVYTPFWRNWNSRSKPAPVEVKLPPCQLDATE-L 179
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEYQA 356
V D+P+ DLG + + ++ G + A + L +F EY
Sbjct: 180 TDLAQVPTIDLPTAKDLGFTWENPL---------KLEPGTSAAARELAEFCDRSICEYDE 230
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
Q N+ ++ G + +S L G + R+++ A +I A ++ S
Sbjct: 231 Q-------RNYPALTGTS---GLSAALKFGVIGIRTVW------AATIEAMAQ---TSSD 271
Query: 417 SSGAGSNWLMFELLWRDFFR 436
+ AG EL WR+F++
Sbjct: 272 EARAGITTWQQELAWREFYQ 291
>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
Length = 658
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 142/330 (43%), Gaps = 58/330 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALQEAVRGADTVRCVYFLDPWFAGSSNLGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 DDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEALDQ--LKGLP 301
G+EV TLY+LD + G+ P Y F+ + ++ + +E L +
Sbjct: 120 AGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGCCV 179
Query: 302 SRGDVEPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
+ + GD +PSL +LG G P+A GGETEAL R+ K + A
Sbjct: 180 TPVSEDHGDKYGVPSLEELGFDIE------GLPSA-VWPGGETEALTRIERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR-------SMFDELKKTATSIS 405
++ P+ N + S G +SP+L GCLS R ++ ++KKT+T
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPL 284
Query: 406 AASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ L +LLWR+FF
Sbjct: 285 S------------------LYGQLLWREFF 296
>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
Length = 540
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 144/337 (42%), Gaps = 55/337 (16%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTG 174
A R + WFR LRVHDN +L+ TA N + V P++ DP + + G
Sbjct: 3 AQRSTLVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL L+ S L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSLT 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K EG++V+ T+Y+ + + K LG+ P Y F V +++ K +
Sbjct: 118 RDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGV 177
Query: 294 LDQLKGL--PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
++LK + P + +VE D + + Q + P N GGETEAL+R+
Sbjct: 178 PEKLKKMHTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGP--NKFPGGETEALRRM---- 231
Query: 352 AEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELK 398
++ D I+ A F + +SP+L GCLS R +LK
Sbjct: 232 -----------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLK 280
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ S + S L+ +L+WR+F+
Sbjct: 281 EIIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
Length = 481
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 141/338 (41%), Gaps = 72/338 (21%)
Query: 112 RPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD 171
RP+ P A++ ASIV + +DLR+HD+ L A E+ V+P++ DP G GF
Sbjct: 17 RPVRPPAEPAVK-ASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDP---GIKKVGFH 72
Query: 172 KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHD 231
RA+FL + + DL L+ RG LVVR G+P V+ EL + GA+ V+ VS
Sbjct: 73 AAN--RAAFLADCLGDLDAGLRERGGRLVVRAGEPAQVVRELVGSTGAERVHVAAGVSAY 130
Query: 232 EVKSEEKIEAAMKDEGIE-VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
+++ AA++ G E V++ T ++ + + + + +R+
Sbjct: 131 ARNRADRLRAALEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREP 190
Query: 291 IEALDQLK--------GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETE 342
+ A +L G+P R DVE G P L +GGE E
Sbjct: 191 LGAPRKLSVPSKVRSDGVPRREDVE-GVSPGL---------------------ARGGERE 228
Query: 343 ALQRLKKFAAEYQAQPPKGNKDGN------HDSIYGANFSCKISPWLAMGCLSPRSMFDE 396
RL + +DG HD + G + + ++SP+L G LS
Sbjct: 229 GRARLADW-----------RRDGISRYEDLHDDLAG-DGTSRLSPYLHFGALSAAECVHR 276
Query: 397 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
+ GAG++ + +L WRDF
Sbjct: 277 ARAV-----------------GGAGADAFVRQLCWRDF 297
>gi|213967212|ref|ZP_03395361.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
T1]
gi|301381052|ref|ZP_07229470.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
Max13]
gi|302062191|ref|ZP_07253732.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
K40]
gi|213928054|gb|EEB61600.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
T1]
Length = 482
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 136/318 (42%), Gaps = 42/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + + +Y + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
+M+ +G+ HLD L FK G + T G + + + K V + +A+ +
Sbjct: 116 SMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTV 168
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P +P I S D Q S K + GE EA +R++ FA E Q
Sbjct: 169 HTPEAQ--QPLSIKS--DAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGE-QISY 223
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K +D + ++S +LA G +SPR + AA N GE +
Sbjct: 224 YKDERD-----FPARPGTSQLSAYLAAGVISPRQ----------CLHAALASNQGEFETG 268
Query: 419 GAGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 269 DVGTVTWINELLWREFYK 286
>gi|405975335|gb|EKC39908.1| Cryptochrome-1 [Crassostrea gigas]
Length = 510
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 139/320 (43%), Gaps = 36/320 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++ +I WFR LR+HDN +L A + V PV+ DP ++ G + R FL
Sbjct: 1 MKTCAIHWFRKGLRLHDNPALQAACKVADDVKPVFILDPWFANNANVGVN-----RWRFL 55
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++ +L +NL+ S L + GKP V +L K G + ++ + + +I+
Sbjct: 56 LQTLQNLDENLKKINSRLYIIKGKPADVFPKLFKNWGVSHLTFEEDIEPYALTRDSEIKK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ ++V TL+ + K G+ P Y + + + K +++ + K
Sbjct: 116 LADEHNVKVTSCVSHTLFDPQRIISKNGGKAPLTYQRLQTVLSSLGSPPKPVDSPSECKT 175
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE----YQ 355
+ +PSL DLG S+ GGETEAL+RL+ +
Sbjct: 176 KTESDHDKKYGVPSLEDLGKSEKEC-------GPLLFPGGETEALRRLESMMGKKNWVCT 228
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
+ PK + S + +SP+L GCLSPR + +L++ +N +
Sbjct: 229 FEKPKTAPNSLEPS------TTVLSPYLKFGCLSPRMFYYKLQEV---------YNKAKH 273
Query: 416 GSSGAGSNWLMFELLWRDFF 435
S L+ +LLWR+F+
Sbjct: 274 TSPPVS---LLGQLLWREFY 290
>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
Length = 481
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 127/312 (40%), Gaps = 37/312 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
RA I W R DLR+ D+ L A V+PV+ D +S + +R +E
Sbjct: 5 RAIIYWLRRDLRLADHPGLAAAAASGRPVVPVFIHD-----ESVAALGAAPAFRLGLGLE 59
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
L GS L++R G VL L GA AV+ RE + + + ++ A+
Sbjct: 60 RFG---ATLGDMGSRLILRRGSAPAVLQALIAETGAGAVWWTREYTPQAITRDSALKTAL 116
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+ GIE + F G+ L+ + G Y F V ++ + A D
Sbjct: 117 QQAGIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVS----QREVSAPDPAPARVRP 172
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
+ PG +L D GL A M +G A GE AL+RL +F A G
Sbjct: 173 PEAWPGS-EALSDWGL--GAPMRRGAAVVATHQAPGEAAALERLDRFIAT-----GIGQY 224
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA-GS 422
D D G + + +S L++G + PR+++ GE+ GA G+
Sbjct: 225 DACRDLPAG-DGTSTLSDALSLGEIGPRTLWHRA---------------GEAAHKGAQGA 268
Query: 423 NWLMFELLWRDF 434
+ +L+WRDF
Sbjct: 269 ETFLKQLVWRDF 280
>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
Length = 618
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 139/327 (42%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ W R LR+ DN +L + + VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWVRQGLRLPDNRALREVIQGADTARCVYILDPSFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG GG P+A GGETEAL RL K
Sbjct: 176 SKCTTPVSDDHDEKCGVPSLEELGF------DTGGLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 139/316 (43%), Gaps = 39/316 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR LR+ D+ +L A V+ Y +D + SSG G +L +S+
Sbjct: 6 TIVWFRESLRLSDHPALYAAAKSGGPVVCSYIYD-----QESSGLRHLGAATRWWLAQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+ +L+ G+DL++R G+ VLVELA+ A AVY + + +EA + +
Sbjct: 61 RALQADLKTLGADLIIRRGRAAQVLVELARETRASAVYWNDVAQAGPRRVASSVEAGLGE 120
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G+ + F L + K G P + F ++V + D K LP+ G
Sbjct: 121 IGVASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALG--------DPPKPLPTPGR 172
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKP-----AANSMKGGETEALQRLKKFAAEYQAQPPK 360
+ +P+++ L + + M + +P + + GE A QRL F +
Sbjct: 173 L--AAVPNVVSLTVDE--LMLEPTRPDWAGGLRATWQAGERAAQQRLGSF-----LESAV 223
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
G+ G+ D + + ++SP L G +SPR ++ + A A +K
Sbjct: 224 GSYAGDRDRP-DIDATSRLSPHLRFGEISPRQIWYAARFAAEERPALAK----------- 271
Query: 421 GSNWLMFELLWRDFFR 436
G + + E+ WR+F R
Sbjct: 272 GIDKFLSEIGWREFSR 287
>gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
Length = 499
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 138/316 (43%), Gaps = 46/316 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIES 184
+VWFR DLR+HDN +L A ++ + DP + P RAS +L S
Sbjct: 11 LVWFRRDLRLHDNPALWAAVRSGRPLVCAFIDDP-------DAVAQLAPGRASRWWLHHS 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++ L ++++ RG LV+R G + LV L G+ V+ +R + + + A +
Sbjct: 64 LAALSRSIRQRGGQLVLRRGDTTSELVRLCGETGSSEVFWNRGDNPTRDSGDTALAARLA 123
Query: 245 DEGIEVKYFWGSTLY----HLD--DLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
D G++ + F TL+ HL+ P+++ T + ++ ++ E + A D+L
Sbjct: 124 DRGVKARGFASGTLFNPATHLNGSGKPYRVF---TPF--WKACLRAPEPSAALPAPDRLP 178
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
G D SL ++ SQ +P GE AL RL+ F A A
Sbjct: 179 GAAVTASDNLEDW-SLRPQAPDWASGFSQDWEP-------GEDGALNRLEAFLANELADY 230
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
P+ + D + ++SP LA G +SPR+++ ++ A E G S
Sbjct: 231 PQSRDRPDEDG------TSRLSPHLAWGEISPRTIWHTVRDHA------------ERGGS 272
Query: 419 GAGSNWLMFELLWRDF 434
G + EL WRDF
Sbjct: 273 FQGGEKFLSELGWRDF 288
>gi|354568677|ref|ZP_08987840.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
gi|353539931|gb|EHC09411.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
Length = 480
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 134/323 (41%), Gaps = 49/323 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L TA S V+ V+C DP + D P R +++I +
Sbjct: 6 LFWHRRDLRISDNTGLATARQRSAKVVGVFCLDPNILER-----DDVAPVRVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+K GS L++ P + LA A+GA AV+ + +V + + I +A+K++
Sbjct: 61 ALQKRYAQAGSQLLILHAHPTQAIPALAVALGAKAVFWNWDVEPYSQERDRTIISALKEK 120
Query: 247 GIE-VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL----- 300
GIE ++ W L+ +D+ + T Y F + + + L+ +GL
Sbjct: 121 GIEFLENNWDQVLHAPEDIRTGSNQPYTVYTPFWKNWISKPKAEPVATLENAEGLTEKEK 180
Query: 301 ---PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AE 353
S G + +PS DLG + + GE A +RL++F E
Sbjct: 181 EIAKSAGVIA---LPSAKDLGFVWDGEL---------IIAPGEQAAQERLEEFCDRAINE 228
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
YQ Q DG + ++S L G + R ++ ++ W +
Sbjct: 229 YQEQRNFPAVDG----------TSRLSAALKFGAIGIRRVWQATQQV---------WENS 269
Query: 414 ESGSSGAGSNWLMFELLWRDFFR 436
S + + EL WR+F++
Sbjct: 270 RSEETQSNIRTWQQELAWREFYQ 292
>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
Length = 526
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 138/331 (41%), Gaps = 41/331 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRAS 179
+ S++WFR LR+HDN +L + + V PV+ DP D S G G R
Sbjct: 3 KRSLMWFRKGLRLHDNPALLRSCEGASHVYPVFVLDPWFLAPDPTAPSPGSKLVGVNRIR 62
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL++S+ DL +NL+ GS L+V G P TV+ EL + + + + I
Sbjct: 63 FLLQSLEDLDENLRKHGSRLLVLHGNPTTVIPELLMKWQINELCFEFDTEPYAQDRDADI 122
Query: 240 EAAMKDEGIEVKYFWGSTLYH-LDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ G+EV TL++ +D + G+ P Y F K+ G L
Sbjct: 123 KKLATKYGVEVFSPVSHTLFNPIDTIRKNGGQTPLTYQAFL-KLTGKPPLPVTAPLQIPS 181
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
DV +P L DLG + + P GGETEAL+RL +K+
Sbjct: 182 PPEDLNDVHVVPVPKLEDLGY---VNLDEEFSPHP----GGETEALRRLDKSLVNQKWVC 234
Query: 353 EYQAQPPKGNKDGNHD--------SIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 404
+++ PKGN + + +N + P + GCLS R L
Sbjct: 235 DFEK--PKGNPTAFIEPATTVLSPYLKASNLGFLLKP-MLFGCLSCRLFHQRL------- 284
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ ++ + SS S L +LLWR+FF
Sbjct: 285 --LAVYSQNKKHSSPPVS--LEGQLLWREFF 311
>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
Length = 529
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 137/324 (42%), Gaps = 40/324 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+R +I FR LR+HDN +L A S V PVY D R + SS G R FL
Sbjct: 1 MRHRTIHLFRKGLRLHDNPALLAALQSSEVVYPVYILD-RAFMTSSM---HIGALRWHFL 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ DLR +L+ GS L+V G+ E+V+ + + V E+ + E I
Sbjct: 57 LQSLEDLRSSLRQLGSCLLVIQGEYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRG 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVK-----GVEIRKTIEALD 295
++ G +V G +LY+ L G P Y F + V +R
Sbjct: 117 LGEELGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLGDPEVPVRNPTAEDF 176
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY- 354
Q P G E +P DL + + + +GGE+E LQRL++ A+
Sbjct: 177 QRCSPPELGLAECYGVPLPTDLKIPPE---------SISPWRGGESEGLQRLEQHLADQG 227
Query: 355 ---QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
PK + S G +SP+ + GCLS RS F L ++I A +K +
Sbjct: 228 WVASFTKPKTVPNSLLPSTTG------LSPYFSTGCLSVRSFFYRL----SNIYAQAKHH 277
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 278 SLPPVS-------LQGQLLWREFF 294
>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
Length = 828
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 130/320 (40%), Gaps = 53/320 (16%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ ++ WFR LR+HDN +L ++ S+ V+ DP G S+ G +K FL+
Sbjct: 47 KKHTVHWFRKGLRLHDNPALREGLKDAASLRCVFVIDPWFAGSSNVGINKW-----RFLL 101
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+ + DL +NL+ S L V G+P L +L K G + + + I
Sbjct: 102 QCLEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEM 161
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV------EIRKTIEALD 295
K+ I+V TLY L+ + K G P Y F+ + + E T+ A+
Sbjct: 162 CKELNIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASMDAPPQPEPAITLAAIG 221
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
+ + +P+L +LG ++G KP GGETEAL RL++
Sbjct: 222 RAVTPQCDDHDDKYGVPTLEELGFE-----TEGLKPPI--WVGGETEALARLERHL---- 270
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
G + G +SP+L GCLS R + +L I A
Sbjct: 271 -----GTQTG-------------LSPYLRFGCLSTRLFYYQLTDLYKKIKKAYP------ 306
Query: 416 GSSGAGSNWLMFELLWRDFF 435
L +L WR+FF
Sbjct: 307 ------PLSLHGQLFWREFF 320
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 147/318 (46%), Gaps = 39/318 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I W R DLRV DN L+ A +S ++ ++C D + D P R ++++ +
Sbjct: 6 IFWHRRDLRVSDNIGLSQAYQKSSKLVGLFCLDSNLLNR-----DDIAPARVNYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+K+ Q GS L++ G+P ++ ++A A+ D V+ + +V + +++++ A++++
Sbjct: 61 HLQKSYQKLGSQLLIFQGEPTKIIPKVADALNVDCVFWNNDVEPYSKERDKQVKEALEEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTN-YGGF-REKVK--GVEIRKTIEALDQL--KGL 300
I+ K +W L+ ++ K P Y F R VK +I ++IE L+ L + +
Sbjct: 121 SIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEEKADIVESIEKLESLSDEEI 180
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA--AEYQAQP 358
+ D+ D+P+ DLG S A + ++ GET A ++L F+ A Y Q
Sbjct: 181 NTVKDLGLIDLPTAKDLGYSWDAPL---------LLEPGETAAKEQLNYFSDNAIYSYQE 231
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+ ++ + + K+SP G + R ++ + + + S +
Sbjct: 232 QR--------NLPAIDATSKLSPAFKFGIIGIREVWQ---------ATVEAYENTRSDEA 274
Query: 419 GAGSNWLMFELLWRDFFR 436
E+ WR+F++
Sbjct: 275 RENIQTWQQEIAWREFYQ 292
>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
Length = 476
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 147/315 (46%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A + + VL V+ P + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQH-----EMAPRQAAFIHANL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEA 241
+++ L RG LV + V+ A A +A++ +R+ +E+K +++ +
Sbjct: 60 LQVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQR 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + GEM Y FR+ I++ E+ ++ LP
Sbjct: 120 RLSGQVI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAF----IQRLTES--DVRSLP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ E G +P + AA A GE AL+RL+ F E Q Q
Sbjct: 173 APKRREGGALPVSV-----APAAFDYPQVEAGADFPAGEDAALKRLRAFCRE-QVQDYLQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D +I G + +SP+LA+G LSPR F+ L+ + + +SG+ G
Sbjct: 227 QRD--FPAIAGTS---SLSPYLAIGVLSPRQCFNRLRAECPQVL-----ENSDSGAFG-- 274
Query: 422 SNWLMFELLWRDFFR 436
WL EL+WR+F+R
Sbjct: 275 --WLN-ELIWREFYR 286
>gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
Length = 473
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 132/308 (42%), Gaps = 35/308 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+ D+ +L+ A N V+PV+ D KS + +R + +++
Sbjct: 8 LLWYRRDLRLSDHPALSAAANAGRPVIPVFIKD-----KSVNALGAAPKWRLGLGVGALA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
D +L+ S L++R G L L K GA VY R D V+ + KI+ + ++
Sbjct: 63 D---SLEGVSSRLILREGDALEALQALIKETGAGTVYWSRLYDPDSVQRDSKIKETLCND 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GIE K F G ++ + K G+ Y F VK ++ + A L S D
Sbjct: 120 GIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAPESWPDS 179
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
+ D G AAM +G + GE A RL F A A K +D
Sbjct: 180 DALD-------GWGLGAAMDRGADVVRRFVCLGEKAAQSRLGAFMAHGVAD-YKLTRD-- 229
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
I G + + +S L++G +SP + ++ +DG+ G+ +
Sbjct: 230 ---IPGTDGTSNLSENLSLGEISPHQCWHAAQRAL---------HDGKQGAET-----FL 272
Query: 427 FELLWRDF 434
EL+WR+F
Sbjct: 273 KELVWREF 280
>gi|340376121|ref|XP_003386582.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 544
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 129/290 (44%), Gaps = 30/290 (10%)
Query: 129 WFRND-LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSD 187
WFR D LR+ DN + + A + + V DP + SG +R FL+ES+ D
Sbjct: 50 WFRLDSLRLSDNPAFHHAVSSGKRLKAVVILDPWFNSNNKSG-PSANVWR--FLLESLHD 106
Query: 188 LRKNLQAR--GSDLVVRVGKPETVLVEL-AKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
L LQ R + L + +G+P VL L K ++ + + S + K +E I+ A
Sbjct: 107 LDSRLQKRPYNTRLNIYLGQPTVVLSALFHKWNVSELTFQASQTSLESKKHDELIKFAAD 166
Query: 245 DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGL-- 300
+ ++ F+ TLY+ +D L G P +Y R + V R+ D + L
Sbjct: 167 SQNVKTTSFYSHTLYNPEDILRANNGRFPHSYKELRRLLPLVGRPREPFPEPDPVLVLLR 226
Query: 301 ---PSRGDVEPGD--IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P D+E + IPSL DLG + NS GGETE L RL F +
Sbjct: 227 QNSPEDQDLEEPENRIPSLQDLGFGLEETL------YTNSWVGGETEGLSRLSNFCSRRS 280
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
QP ++ I + P++ GCLS R +F +L++ A++ S
Sbjct: 281 TQP--------NEPITWLISKDSLGPYIRFGCLSVRQLFSQLRQYASTSS 322
>gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
Length = 469
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 137/324 (42%), Gaps = 58/324 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VW RNDLR+ D +L A E SVL V+C R + + R FL+ ++
Sbjct: 2 NLVWLRNDLRISDQRALGAAAAEGGSVLAVFCLCQRQWQRH-----HMAAVRRDFLLRNL 56
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
LR LQA G L V PE L++LA+ GA ++ + E + DE + + +E
Sbjct: 57 ECLRLQLQAVGIPLFVLDCHDFAAVPEA-LLKLARTTGARRLFFNEEYAIDEWRRDMAVE 115
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL------ 294
++ G+EV+ + L GE + F++ + + AL
Sbjct: 116 RCFRENGMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENP--ALLAPAPI 173
Query: 295 --DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
Q P G P DIP P A+ GE EA +RL+ F
Sbjct: 174 VNTQPHPFPGDGAALPTDIP-----------------HPLAHLWPAGEAEAQRRLQAF-- 214
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
+ + D + +I G + +SP+LA G LS R +SAA + +
Sbjct: 215 -LDGPIRRYHLDRDFPAIEGTS---ALSPYLACGVLSIRQ----------CVSAALELAN 260
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
G GS GA WL EL+WR+FF+
Sbjct: 261 G--GSEGA-RVWLS-ELIWREFFQ 280
>gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 474
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 129/308 (41%), Gaps = 36/308 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR DLR+ D+ +L+ A V+PV+ D S D G L ++
Sbjct: 9 LIWFRQDLRLSDHPALSAAVRSGRPVIPVFIRD--------SLVDDLGAAPKWRLSLGLA 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L +NL+ +GS LV+R G L L GA VY R D + + I++ + +
Sbjct: 61 ALAQNLEHKGSKLVLRSGPALDALKALIDETGAREVYWSRAYDPDAIARDTHIKSVLTEL 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ K F G L+ + K G+ + V ++ A ++L P
Sbjct: 121 GLTAKSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQRDVPSPDPAPERLAAPPLWPAS 180
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
E L D GL AM +G ++ GET A RL F A P +D
Sbjct: 181 E-----HLDDWGLGH--AMRRGAGIVGQHVQAGETAAEARLDAFMERLDAYP--AQRDAL 231
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
D + + +S +LA+G + PR+++ +K A GS GA + +
Sbjct: 232 AD-----DGTSHLSEYLALGEIGPRTVWHRVKGAAL------------IGSIGADA--FL 272
Query: 427 FELLWRDF 434
+L+WR+F
Sbjct: 273 RQLVWREF 280
>gi|402699638|ref|ZP_10847617.1| deoxyribodipyrimidine photolyase [Pseudomonas fragi A22]
Length = 481
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 137/318 (43%), Gaps = 42/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR +DN +L+ A +V VY P + P + F + ++S
Sbjct: 3 LIWLRSDLRQNDNTALSAAAERGPTV-AVYLISPEQWLAHDD-----APCKVDFWLRNLS 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L +L+ L++R + VLVEL + +G + V+ + E E + ++ + A
Sbjct: 57 VLSDSLEQLNIPLLIRSAPAWDQAPAVLVELCQQLGIEDVHVNDEYGIHETRRDQAVARA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ +GI HLD L F+ G + T G + + + RK P
Sbjct: 117 LDAKGIGFH-------RHLDQLLFQPGSVLTKTGTYFQVFS--QFRKVCYERLHTGLPPI 167
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK----GGETEALQRLKKFAAEYQAQP 358
P ++ ++QS + G P +++ GE EA QRL +FA E Q
Sbjct: 168 VATPRPQAQLTIARDAIAQSVS---GFAPPDETLRALWPAGEDEARQRLARFADE-QIHY 223
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K +D + + ++SP+LA G +SPR + AA N+GE S
Sbjct: 224 YKEERD-----LPAKPGTSQLSPYLAAGVISPRQ----------CLHAALLSNNGEFESG 268
Query: 419 GAGSNWLMFELLWRDFFR 436
G + EL+WR+F++
Sbjct: 269 SVGCATWISELIWREFYK 286
>gi|220905687|ref|YP_002480998.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
Length = 475
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 136/317 (42%), Gaps = 38/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP + D P R +++I S+
Sbjct: 6 LFWHRRDLRIADNVGLAAARQRTAKVVGVFCLDPNLLER-----DDVAPARVAYMIGSLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS L++ +P + +LA A+ A AV+ + +V + + ++ A++
Sbjct: 61 HLQQQYVQSGSQLLILHQQPTIAIPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP----- 301
GIEV+ FW L+ + GE T + F + +L GL
Sbjct: 121 GIEVQNFWDQLLHPPAAIKTGSGEAYTVFSPFWRNWSRQPKEPPVPSLATATGLTPTEQQ 180
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA--AEYQAQPP 359
+ V +P+ DLG + ++ GET A +RL++F A Y Q
Sbjct: 181 AADQVGAIALPTAKDLGFIWDTPL---------PLEPGETAAQERLEQFCQRAIYAYQ-- 229
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
++ N + G + ++S L G L R+++ AT+ SA E+ S
Sbjct: 230 ---QERNFPATTG---TSQLSAALKFGVLGIRTVW------ATTQSALESSRSQEAEDS- 276
Query: 420 AGSNWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 277 -IQTWQQ-ELAWREFYQ 291
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
Length = 1043
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 133/320 (41%), Gaps = 35/320 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN +L + S V+ DP G S+ G +K +R FL++
Sbjct: 106 KHTVHWFRKGLRLHDNPALREGVRGATSFRCVFVIDPWFAGSSNVGINK---WR--FLLQ 160
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +NL+ S L V G+P L +L K + + + I
Sbjct: 161 CLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWSTTCLTFEEDPEPFGRVRDHNISEMC 220
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV------EIRKTIEALDQ 296
K+ GIEV TLY+L+ + K G P Y F+ + + E T+EA+
Sbjct: 221 KELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPETTITLEAIGG 280
Query: 297 LKG-LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
L D + G +P+L +LG A +P GGETEAL RL++
Sbjct: 281 ATTPLYDDHDDKYG-VPTLEELGFETEAL-----RPPV--WIGGETEALARLERHLERKA 332
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
G S+ + +SP+L GCLS R + +L I A
Sbjct: 333 WVASFGRPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKACP------ 384
Query: 416 GSSGAGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 385 ------PLSLHGQLLWREFF 398
>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
Length = 519
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 144/321 (44%), Gaps = 41/321 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN +L A + + P++ DP + K++ + G R FLIE++
Sbjct: 5 TIHWFRKGLRLHDNPALIAALKDCRHIYPLFLLDPW-FPKNT----RIGINRWRFLIEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G P VL +L K + + ++++ K+
Sbjct: 60 KDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEAL--DQLKGLP 301
G+EV TLY++D + + G+ P Y + VK + +K I A + ++G+
Sbjct: 120 YGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDMRGVS 179
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE----Y 354
S E IP+L DLGL S+ + GGE EAL+RL +
Sbjct: 180 TPLSDDHEEKFGIPTLEDLGLDTSSL-------GPHLFPGGEQEALRRLDEHMERTNWVC 232
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ + PK + + S + +SP++ GCLS R+ + L G+
Sbjct: 233 KFEKPKTSPNSLIPS------TTVLSPYVRFGCLSARTFWWRLADVYR----------GK 276
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
+ S S L +LLWR+FF
Sbjct: 277 THSDPPVS--LHGQLLWREFF 295
>gi|302130079|ref|ZP_07256069.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 482
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 136/318 (42%), Gaps = 42/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K + L++R PE VL L K + + +Y + E +E + ++ ++
Sbjct: 57 ELEKAIGKLNVPLLIREADTWDQAPE-VLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
+M+ +G+ HLD L FK G + T G + + + K V + +A+ +
Sbjct: 116 SMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTV 168
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P +P I S D Q S K + GE EA +R++ FA E Q
Sbjct: 169 HTPEAQ--QPLSIKS--DAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGE-QISY 223
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K +D + ++S +LA G +SPR + AA N GE +
Sbjct: 224 YKDERD-----FPARPGTSQLSAYLAAGVISPRQ----------CLHAALASNQGEFETG 268
Query: 419 GAGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 269 DVGTVTWINELLWREFYK 286
>gi|422297090|ref|ZP_16384734.1| deoxyribodipyrimidine photolyase [Pseudomonas avellanae BPIC 631]
gi|407991591|gb|EKG33413.1| deoxyribodipyrimidine photolyase [Pseudomonas avellanae BPIC 631]
Length = 482
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 136/318 (42%), Gaps = 42/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAALQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + + ++ + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLSSLCKQLNVEGLHLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
AM+ +G+ HLD L FK G + T G + + + K V + EA+ +
Sbjct: 116 AMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTV 168
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P +P I S D Q + K + GE EA +R++ FA E Q
Sbjct: 169 HTPEAQ--QPLSIKS--DAIPDQVKGFTTPSKSLRDLWPAGEVEASRRIEAFADE-QISY 223
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K +D + ++S +LA G +SPR + AA N GE +
Sbjct: 224 YKDERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALASNQGEFETG 268
Query: 419 GAGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 269 DVGTVTWINELLWREFYK 286
>gi|376004880|ref|ZP_09782483.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
gi|375326730|emb|CCE18236.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
Length = 474
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 143/322 (44%), Gaps = 49/322 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP SG D P R +++I +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----AILSG-DDIAPVRVAYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA AVY +++V + + +E ++ +
Sbjct: 61 CLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLK--G 299
GI+V+ FW L H + F + P KV RK I E D LK G
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCDTLKSRG 172
Query: 300 LP---SRGDVEPGDI--PSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
L + +E G I P+ DLG S ++ GET A RL+ F
Sbjct: 173 LTEAQEKAALEAGAIALPTAKDLGFIWSEPF---------ILEPGETAASDRLQLFCDRA 223
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ +G N +I G + +SP L G + R+++ + ++ I A ++ ++
Sbjct: 224 IYEYDQGR---NFPAIDGTSL---LSPALRFGAIGIRTLWQKTQE----IMALTRSDEAR 273
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
W E+ WR+F++
Sbjct: 274 DHI----QTWQQ-EIAWREFYQ 290
>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
Length = 530
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 136/325 (41%), Gaps = 41/325 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+R +I FR LR+HDN +L A S V PVY D R + SS G R FL
Sbjct: 1 MRHRTIHLFRKGLRLHDNPALLAALQSSEVVYPVYILD-RAFMTSSM---HIGALRWHFL 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ DLR +L GS L+V G+ + V+ + + V E+ + E I A
Sbjct: 57 LQSLEDLRSSLCQLGSCLLVIQGEYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRA 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVK-----GVEIRKTIEALD 295
++ G EV G +LY+ L G P Y F + + IR
Sbjct: 117 LGEELGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLGDPEMPIRNLTAEDF 176
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
Q P E +P DL + + + +GGE+E LQRL++ A+
Sbjct: 177 QRCSPPELCLAECYRVPLPTDLKIPPE---------SISPWRGGESEGLQRLEQHLADRS 227
Query: 356 A-----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
PK + S G +SP+ +MGCLS RS F L ++I A +K
Sbjct: 228 GWVASFTKPKTVPNSLLPSTTG------LSPYFSMGCLSVRSFFYRL----SNIYAQAKH 277
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ S L +LLWR+FF
Sbjct: 278 HSLPPVS-------LQGQLLWREFF 295
>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
Length = 474
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 134/312 (42%), Gaps = 37/312 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R I W R DLR+ DN +L A ++P+Y DP+D +R +E
Sbjct: 5 RPVIWWIRRDLRLRDNPALTAALETGGPIIPLYIHDPQD-----EALGAAPKFRLGLGLE 59
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ K L+ GS L +R G VL E+ K GA V R + +K + +I+ +
Sbjct: 60 RFA---KTLEGHGSRLTLRKGDALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQL 116
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
K I VK G ++ + K G M Y F + V+ E+ I+A L
Sbjct: 117 KAADITVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPANLP----- 171
Query: 304 GDVEPGDIPSLLDLG-LSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+P P+ +L + SAAM +G + A + G+ AL++L +F E + Q K +
Sbjct: 172 ---KPDAWPATDELADYNISAAMRRGAEIVAGYCRVGDDAALEQLDRFLEE-RVQTYKAD 227
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
+D + + ++S LA G +SP M+ A DG+ G+
Sbjct: 228 RDFPSRAA-----TSELSENLAWGEISPHRMWH---------LGAQAMRDGKQGAEH--- 270
Query: 423 NWLMFELLWRDF 434
+ E++WR+F
Sbjct: 271 --FLKEVVWREF 280
>gi|404399161|ref|ZP_10990745.1| deoxyribodipyrimidine photolyase [Pseudomonas fuscovaginae UPB0736]
Length = 481
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 142/332 (42%), Gaps = 70/332 (21%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+HDN +L+ A +V V+ P + P + F + ++
Sbjct: 3 LFWLRTDLRLHDNTALSAAARSGPTV-AVFLLTPGQWLAHDD-----APCKIDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R + VL++L + + DAV+ + E E + ++ + A
Sbjct: 57 ELSQALAELNIPLLIRHADTWDQAPAVLLDLCQPLAIDAVHVNEEYGVHETRRDQAVAKA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG--- 299
++ GI+ HLD L F+ G + T GG+ + + RK + +L G
Sbjct: 117 LESHGIDFH-------SHLDQLFFRPGSVLTRTGGYFQVFS--QFRKVCYS--RLHGALP 165
Query: 300 -----------LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLK 348
LP D IPS +D G + A + PA GE EA +RL+
Sbjct: 166 ALVAAPATQAPLPLSSD----PIPSAVD-GFASPAQSLRDLWPA------GEKEARRRLE 214
Query: 349 KFAAE----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 404
FA + YQ++ K G + ++S +LA G +SPR +
Sbjct: 215 SFADQQIDYYQSERDFPAKPG----------TSQLSTYLAAGVVSPRQ----------CL 254
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
AA + N GE S G+ + ELLWR+F++
Sbjct: 255 HAALQSNQGEFDSGNVGAVTWINELLWREFYK 286
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP+ + P R ++L +
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSAD-----MAPARVAYLQGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS L++ G P+ ++ +LA+ + A+AVY ++++ + ++ AA+K
Sbjct: 61 ELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI W L+ D + G + YG F + + + +L D+
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELV------DL 174
Query: 307 EPGDIPSLLDLGLSQSAAMSQ------GGKPAANSMKGGETEALQRLKKFA 351
P + ++ L LS+ + Q GG P ++ GET A+ RL++F
Sbjct: 175 SPEQLTAIAPLLLSELPTLKQLGFDWDGGFP----VEPGETAAIARLQEFC 221
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 140/322 (43%), Gaps = 47/322 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S V+ V+C DP + D P R +++I S+
Sbjct: 6 LFWHRRDLRIADNIGLAAARQQSSKVVGVFCLDPNILER-----DDVAPARVTYMIGSLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ GS L++ G P + LA+A+ A AV+ + +V + I +KD+
Sbjct: 61 ELQQRYVQAGSQLLILHGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDILKDK 120
Query: 247 GIE-VKYFWGSTLYHLDDLPFKLGEMPTNYGGF------REKVKGVEIRKTIEAL-DQLK 298
GI+ + + W L+ D++ T Y F + K K VE + E L + +
Sbjct: 121 GIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQNAEGLTESEQ 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA----EY 354
L + V+ +P+ DLG A + + GE A +L++F A EY
Sbjct: 181 ELAQKAGVKT--LPTAKDLGFFWDADL---------IIAPGEAAAQAKLEEFTAKAITEY 229
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
Q Q DG + ++S L G + R+++ + T ++ N
Sbjct: 230 QEQRNFPAVDG----------TSQLSAALKFGVIGIRTVW---QATLEALE-----NSRS 271
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
+S A W EL WR+F++
Sbjct: 272 EEASAAIRTWQQ-ELAWREFYQ 292
>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
Length = 512
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 140/325 (43%), Gaps = 44/325 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + ++ DP G S+ G +K FL++
Sbjct: 4 KHTVHWFRKGLRIHDNPSLREGLINAKTFRCIFILDPWFAGASNVGINKW-----RFLLQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+SDL +L+ S L V G+P L +L + G + ++ I+
Sbjct: 59 CLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLP-FKLGEMPTNYGGFREKVKGVE-IRKTIEALD-QLKG- 299
+ GI V TLY LD + G+ P Y F+ ++ ++ + + ++D + G
Sbjct: 119 SELGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECIDPPERAVPSIDKEFLGN 178
Query: 300 --LPSRGDVEP-GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
P++ D + +P++ +LG + + A + GGETEAL RL K F
Sbjct: 179 AFTPTKYDHDKIFGVPTVEELGFEEINNI------ARHVWVGGETEALIRLQCHLERKAF 232
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A + PK S G ++P+L GCLS R F EL + I +
Sbjct: 233 IASFGK--PKMTPQSLLASPTG------LAPYLKFGCLSTRLYFSELNELYKKIRKS--- 281
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+ S G +LLWRDFF
Sbjct: 282 ---QPPLSLHG------QLLWRDFF 297
>gi|386824611|ref|ZP_10111744.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
gi|386378568|gb|EIJ19372.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
Length = 476
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 147/318 (46%), Gaps = 44/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A + + VL V+ P + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPTARVLAVFIATPGQWRQH-----QMAPRQAAFIHANL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEA 241
+++ L RG LV ++ A A DA++ +R+ +E++ + + E
Sbjct: 60 LQVQQALADRGIPLVCHQCDDFAAAIDWLVAYCAQERVDALFYNRQHEINELRRDRQAER 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + GEM Y FR+ I++ E ++ LP
Sbjct: 120 RLSGQVI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAF----IQRLSEF--DVRSLP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAAN---SMKGGETEALQRLKKFAAEYQAQP 358
+ E G +P SAA + P+A GE ALQRL+ F E Q Q
Sbjct: 173 APKPREGGALPV--------SAAPAAFDYPSAGVGADFPAGEEAALQRLRVFCRE-QVQD 223
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+D +I G + +SP+LA+G LSPR F+ L+ + + +SG+
Sbjct: 224 YLQQRD--FPAIAGTS---SLSPYLAIGVLSPRQCFNRLRAECPQVL-----ENSDSGAF 273
Query: 419 GAGSNWLMFELLWRDFFR 436
G WL EL+WR+F+R
Sbjct: 274 G----WLN-ELIWREFYR 286
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP+ + P R ++L +
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSAD-----MAPARVAYLQGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS L++ G P+ ++ +LA+ + A+AVY ++++ + ++ AA+K
Sbjct: 61 ELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI W L+ D + G + YG F + + + +L D+
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELV------DL 174
Query: 307 EPGDIPSLLDLGLSQSAAMSQ------GGKPAANSMKGGETEALQRLKKFA 351
P + ++ L LS+ + Q GG P ++ GET A+ RL++F
Sbjct: 175 SPEQLTAIAPLLLSELPTLKQLGFDWDGGFP----VEPGETAAIARLQEFC 221
>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
Length = 548
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 41/328 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
S++WFR+ LR+HDN SL++A E PV+ FD G G++ R +L+E
Sbjct: 4 GSVLWFRHGLRLHDNPSLHSALEEKGFPFFPVFIFDGETAGTKVVGYN-----RMRYLLE 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ DL L+ G L++ GKP V L + G + ++ ++ +++A
Sbjct: 59 ALEDLDNQLKKHGGRLIMIKGKPNVVFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKSAC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGV-EIRKTIEALD----QL 297
K+ G+ K TL+ D + G + P Y F V + + + + +D +
Sbjct: 119 KEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVSDIDFTGVKF 178
Query: 298 KGLPSRGDVE---PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL-KKFAAE 353
LP E P DLG+ + GGET AL+++ ++ A E
Sbjct: 179 GSLPESFYHEFTVYDKTPKPEDLGV-----FLENEDIRMIRWVGGETTALKQMQQRLAVE 233
Query: 354 YQA------QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
Y+ P GN D + G S +SP L GCLS RS + ++ +
Sbjct: 234 YETFLRGSYLPTHGNPD-----LLGPPIS--LSPALRFGCLSVRSFYWSVQDLFRQV--- 283
Query: 408 SKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ G + A S+++ +L+WR++F
Sbjct: 284 ---HQGRLATQSA-SHFITGQLIWREYF 307
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP+ + P R ++L +
Sbjct: 5 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSAD-----MAPARVAYLQGCLQ 59
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS L++ G P+ ++ +LA+ + A+AVY ++++ + ++ AA+K
Sbjct: 60 ELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI W L+ D + G + YG F + + + +L D+
Sbjct: 120 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELV------DL 173
Query: 307 EPGDIPSLLDLGLSQSAAMSQ------GGKPAANSMKGGETEALQRLKKFA 351
P + ++ L LS+ + Q GG P ++ GET A+ RL++F
Sbjct: 174 SPEQLTAIAPLLLSELPTLKQLGFDWDGGFP----VEPGETAAIARLQEFC 220
>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
Length = 474
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 142/325 (43%), Gaps = 55/325 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP SG D P R +++I +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----AILSG-DDIAPVRVAYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA AVY +++V + + +E ++ +
Sbjct: 61 CLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLKGLP 301
GI+V+ FW L H + F + P KV RK I E D LK
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCDTLK--- 169
Query: 302 SRGDVEPGD----------IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
SRG E + +P+ DLG S ++ GET A RL+ F
Sbjct: 170 SRGLTEAQEKAAREAGAIALPTAKDLGFIWSEPF---------ILEPGETAASDRLQLFC 220
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
+ +G N +I G + +SP L G + R+++ + ++ I A ++ +
Sbjct: 221 DRAIYEYDQGR---NFPAIDGTSL---LSPALRFGAIGIRTLWQKTQE----IMALTRSD 270
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
+ W E+ WR+F++
Sbjct: 271 EARDHI----QTWQQ-EIAWREFYQ 290
>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
Length = 432
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ S+ WFR DLR+ DN L A + VLP++ FD DKT R SF+
Sbjct: 1 MKKLSVFWFRRDLRLEDNTGLYYALQQETDVLPLFIFDRTILDDLE---DKTDA-RVSFI 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ + +L++ L+ +GS L+V+ G PE V EL K A+Y +R+ K + IE
Sbjct: 57 HDQIQNLKEELEKKGSTLLVKYGTPEEVYQELIKKFEIQAIYTNRDYEPYAKKRDRAIEK 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF 278
+++GI S L D + F+ GE+ G F
Sbjct: 117 LAEEKGI-------SFLTFKDQVIFEPGEILNGSGEF 146
>gi|426411468|ref|YP_007031567.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. UW4]
gi|426269685|gb|AFY21762.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. UW4]
Length = 480
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 136/317 (42%), Gaps = 40/317 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+TA V VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSTAAARGPCV-AVYLLSPEQWLEHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R +VL+ L + DA++ + E E + + +
Sbjct: 57 ELSRELGQLNIPLLIRQAPRWDDAPSVLLNLCRQWQVDALHLNDEYGIHESRRDAAVVRT 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ EGIEV + LD L FK G + T G + + + + V + AL L
Sbjct: 117 LQAEGIEVHRY-------LDQLLFKPGSVLTRTGTYFQVFSQFRKVCYERLHHALPSLVR 169
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P + P +I S D + G + GETEA +RL F +E Q +
Sbjct: 170 APYKQ--APLNIAS--DAIPLSVEGFATPGDHLRSLWPAGETEARRRLDNF-SEAQIEHY 224
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ +D + ++S +LA G +SPR + AA N GE S
Sbjct: 225 QNERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALNSNQGEFESGN 269
Query: 420 AGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 270 TGAVTWINELLWREFYK 286
>gi|430003702|emb|CCF19491.1| Deoxyribodipyrimidine photo-lyase [Rhizobium sp.]
Length = 476
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 137/309 (44%), Gaps = 35/309 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR DLR+ DN +L+ A V+ ++ + S+ G G +A +L S+
Sbjct: 9 IVWFRRDLRLADNAALSAAVETGAPVIALFIRE-----GSAGGGMPFGAAQAWWLHHSLL 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
LR+ L RG DL+ G+ TVLV++A+ GA+ +Y +R D+ + I +K E
Sbjct: 64 ALRQALHDRGGDLLFFTGEAATVLVQVAQQTGANQIYLNRSYERDD--QDRDIARRLKAE 121
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
GI V F G L+ + G+ + F + ++ + E R+ + A D ++G S
Sbjct: 122 GIAVHAFHGQLLHDPSHIRTGGGKPFRVFTPFWKALQALGEPREPLAAPDAMRGASSTPP 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
E + LL +A + P GE A RL+ F E+ + K +D
Sbjct: 182 SEQLEDWGLLPTKPDWAAGFGETWTP-------GEAGARFRLEDF-VEHGLREYKSVRD- 232
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + +SP LA G ++P A + AAS ++G+ A
Sbjct: 233 ----FPARDLTSHLSPHLAHGEVTP----------AQAWHAASGLDNGDP----AQITHF 274
Query: 426 MFELLWRDF 434
EL WRDF
Sbjct: 275 RRELAWRDF 283
>gi|333899133|ref|YP_004473006.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
gi|333114398|gb|AEF20912.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
Length = 483
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 143/324 (44%), Gaps = 56/324 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR DLRV DN +L A +V V+ P + + P + F + ++
Sbjct: 4 LMWFRTDLRVTDNSALAAAMQAGPTV-AVFLLSPGQWQQHDD-----APCKVDFWLRNLV 57
Query: 187 DLRKNLQARGSDLVVRVGKPET----VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L+ L++R + V+ LA+ + A AV+ + E +E + +E + AA
Sbjct: 58 ELSRELKRLNVPLLIREADQWSAAPKVIGTLAQELQASAVHVNEEYGVNESRRDEAVSAA 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ + G+ HLD L FK G + T G + + + +GV ++ AL +L
Sbjct: 118 LDELGVNFH-------SHLDRLLFKPGSVLTRTGTYFKVYSQFRGVCYQRLHTALPKLVA 170
Query: 300 LP---SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
P ++ ++ IP Q A + ++ GE A +RL++FA E+
Sbjct: 171 PPKAQAKLEMAADPIP-------EQVAGFDTPSQALRDAWPAGEDAARERLQRFADEW-- 221
Query: 357 QPPKGNKDGNHDSIYGANF-----SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
+ HD+ +F + ++S +LA G LSPR + AA N
Sbjct: 222 ------IEDYHDN---RDFPIRPGTSQLSAYLAAGVLSPRQ----------CLHAALNAN 262
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
GE + G+ + EL+WR+F+
Sbjct: 263 GGEFENGNQGAVTWINELIWREFY 286
>gi|11991490|emb|CAC19669.1| putative lectin [Hordeum vulgare subsp. vulgare]
Length = 63
Score = 80.9 bits (198), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/59 (57%), Positives = 48/59 (81%)
Query: 254 WGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIP 312
WG TLYHLDDLPF+L +MP++YGGFRE VKG+E+RK ++A +++K +P + +EPG P
Sbjct: 3 WGGTLYHLDDLPFRLNDMPSSYGGFREAVKGLEVRKVLDAPEEVKCVPMKNVLEPGPAP 61
>gi|423065610|ref|ZP_17054400.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
gi|406713053|gb|EKD08228.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
Length = 474
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 142/325 (43%), Gaps = 55/325 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP SG D P R +++I +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----AILSG-DDIAPVRVAYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA AVY +++V + + +E ++ +
Sbjct: 61 CLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLKGLP 301
GI+V+ FW L H + F + P KV RK I E D LK
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCDTLK--- 169
Query: 302 SRGDVEPGD----------IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
SRG E + +P+ DLG S ++ GET A RL+ F
Sbjct: 170 SRGLTEAQEKAAREAGAIALPTAKDLGFIWSEPF---------ILEPGETAASDRLQLFC 220
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
+ +G N +I G + +SP L G + R+++ + ++ I A ++ +
Sbjct: 221 DRAIYEYDEGR---NFPAIDGTSL---LSPALRFGAIGIRTLWQKTQE----IMALTRSD 270
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
+ W E+ WR+F++
Sbjct: 271 EARDHI----QTWQQ-EIAWREFYQ 290
>gi|302745164|gb|ADL62685.1| cryptochrome 5, partial [Phreatichthys andruzzii]
Length = 411
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 137/317 (43%), Gaps = 33/317 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + + P++ DP + G + R FLIE++
Sbjct: 5 SIHWFRKGLRLHDNPALLAALKDCRHIYPLFLLDPWYPNNTHIGIN-----RWRFLIEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G P VL +L + + + ++++ ++
Sbjct: 60 KDLDSSLKKLNSRLFVVSGPPAEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMKLAEE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEA--LDQLKGLP 301
G+EV TLY++D + + G+ P Y F V + +K + A + +KG+
Sbjct: 120 NGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAIGSPKKPVPAPTKEDMKGVS 179
Query: 302 S---RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+ E IP+L DLGL S+ N GGE EAL+RL +
Sbjct: 180 TPFFEDHEEEFRIPTLEDLGLDTSSL-------GPNLFPGGEQEALRRLDEHMERTTWVC 232
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+ +SI + + +SP++ GCLS R+ + L G+ S
Sbjct: 233 KFEKPQTSPNSIIPS--TTVLSPYIRFGCLSARTFWWRLADVYR----------GKQHSE 280
Query: 419 GAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 PPVS--LHGQLLWREFF 295
>gi|422587424|ref|ZP_16662095.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330873295|gb|EGH07444.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 482
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 135/318 (42%), Gaps = 42/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAALQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + ++ + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
AM+ +G+ HLD L FK G + T G + + + K V + EA+ +
Sbjct: 116 AMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTV 168
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P +P I S D Q S K + GE EA +R++ FA E Q
Sbjct: 169 HTPEAQ--QPLSIKS--DAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADE-QISY 223
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K +D + ++S +LA G +SPR + AA N GE +
Sbjct: 224 YKDERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALASNQGEFETG 268
Query: 419 GAGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 269 DVGTVTWINELLWREFYK 286
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
Length = 539
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 150/326 (46%), Gaps = 36/326 (11%)
Query: 123 RRASIV-WFRNDLRVHDNESL-------NTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
+ A++V WFR LRVHDN +L NTA + V P++ DP + + G
Sbjct: 4 KHATLVHWFRKGLRVHDNPALSQIFKVANTAPGKYF-VRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL + LQ GS L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQTLHDLDQQLQKLGSRLFVVRGKPAEVFPRIFKSWRVELLTFETDIEPYSLA 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K +G++V+ T+Y+ + + K LG+ P Y F V+ +++ ++
Sbjct: 118 RDSAVQKLAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEKLKLPTVLDL 177
Query: 294 LDQLKG--LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
++LK P + D+E D + + Q + P GGETEAL+R+++
Sbjct: 178 PEKLKEKVQPPKDDIEEKDSEAYDCPTMEQLVKRPEDLGPL--KFPGGETEALRRMEESL 235
Query: 352 AE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
+ + A+ K N N S+ + + +SP+L GCLS R LK+ + S+
Sbjct: 236 KDELWVARFEKPNTAPN--SLEPS--TTVLSPYLKFGCLSSRLFHQRLKEILKRQTKHSQ 291
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFF 435
L+ +++WR+F+
Sbjct: 292 -----------PPVSLIGQMMWREFY 306
>gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 479
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 25/238 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR+ DN +L+ A S V+PV+ FDP+ ++ P R +FL++++
Sbjct: 6 LLWHRRDLRLGDNTALHGAAQRSPQVVPVFVFDPQLLQRAD-----MAPARVAFLLQALQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ G L+ R G P L +LA +GA AV+ + ++ + E ++ A++ +
Sbjct: 61 ELQERYAQMGIPLLWRRGDPAVELRQLAAELGAQAVFWNEDLDPWARQQESRVRASLAEA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV------EIRKTIEALDQLKGL 300
GI + L+ ++ + GE + + F + + I K+++A+ LK
Sbjct: 121 GIPSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWSSLPKPDPFPIPKSLQAVSSLKAQ 180
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQ-----RLKKFAAE 353
P +PSL DLG + + G+ A + + L+ R + F AE
Sbjct: 181 P---------LPSLADLGFVCNQRIPAAGESVAQGLLEDFCQGLRIFEYGRARDFPAE 229
>gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
ymp]
gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
ymp]
Length = 477
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 141/320 (44%), Gaps = 46/320 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR+DLR+ DN +L+ A + S + +Y P + + P + F + +++
Sbjct: 4 LMWFRSDLRIDDNTALSQAMSRG-STIALYLVTPGQWQRHDD-----APCKVDFWLRNLA 57
Query: 187 DLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L + L A L++R + V+ E+ AV+A+ E +E + + A
Sbjct: 58 HLSRALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAY 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ + I W S HLD L FK G + T GG+ + + + V AL L
Sbjct: 118 LAQQDIA----WHS---HLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVA 170
Query: 300 LPSRGDVEP---GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
P P IP +D G + + + PA GE A QRL++FA E Q
Sbjct: 171 RPVAQAPTPLASDAIPHAVD-GFAMPSEQLRSLWPA------GEEAARQRLERFADE-QI 222
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
K +D ++ G + ++SP+LA G LSPR + AA N GE
Sbjct: 223 GYYKDERD--FPALPG---TSQLSPYLAAGVLSPRQ----------CLHAALAANRGEFD 267
Query: 417 SSGAGSNWLMFELLWRDFFR 436
S AG + ELLWR+F++
Sbjct: 268 SGNAGVVTWVNELLWREFYK 287
>gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
Length = 419
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 121/267 (45%), Gaps = 40/267 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++V F DLRV D+ +L+ A E+ V+P++ DP S+ R ++L+E++
Sbjct: 4 TVVLFTRDLRVSDHPALHAAVTEADRVVPLFVVDPALVRVSARN-------RIAYLLEAL 56
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
++LR L+ RG +LVVR G V + GA AVY +VS V+ ++ A++
Sbjct: 57 AELRGLLRERGGELVVRQGDTVAETVRIVAEAGAQAVYLSADVSAAAVRRARQLTEAVRA 116
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G V+ F G T+ L G+ + + + + R A ++++ LP
Sbjct: 117 AGAHVRTFPGVTVVPPGALRPAHGDHYQIFTPYLNAWRAAQWRSPRPAPERVR-LPE--G 173
Query: 306 VEPGDIPS--LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
+ PG +P L+ LG G A +GG A +R++ + AQP
Sbjct: 174 LVPGPLPGAELIRLGT---------GVLAPQREQGGPRTARERIRA----WLAQP----- 215
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSP 390
N DS +G + L GCLSP
Sbjct: 216 --NQDSRFGCH--------LHFGCLSP 232
>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome-1-like [Taeniopygia guttata]
Length = 527
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 140/317 (44%), Gaps = 34/317 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I FR +LR+HDN L A S ++ PVY D R + SS G R +FL++S+
Sbjct: 5 TIHLFRKELRLHDNPVLLAALESSEALYPVYILD-RAFLTSSM---HIGALRWNFLLQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL KNL GS L+V G+ E VL + + V E+ + E I+ +
Sbjct: 61 EDLHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGAE 120
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVK-----GVEIRK-TIEALDQLK 298
G EV +LY+ L G P Y F + + +R T E + +
Sbjct: 121 LGFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPELPVRNLTAEDFQRCR 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P G E +P +DL +S + + +GGETE L+RL++ +
Sbjct: 181 A-PEPGLAECYRVPLPVDLKISPE---------SLSPWRGGETEGLRRLEQHLIDQGWVT 230
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+ +S+ + + +SP+ +MGCLS R+ F L ++I A +K + S
Sbjct: 231 SFAKPRTSPNSLLPS--TTGLSPYFSMGCLSVRTFFYRL----SNIYAQAKHHSLPPVS- 283
Query: 419 GAGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 284 ------LQGQLLWREFF 294
>gi|420822431|ref|ZP_15290112.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
gi|391695682|gb|EIT28232.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
Length = 480
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + E+ SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua]
gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua]
gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 485
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + E+ SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
F]
Length = 487
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + E+ SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
Length = 487
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHV-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + E+ SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1, partial [Passer domesticus]
Length = 361
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 137/315 (43%), Gaps = 44/315 (13%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
LR+HDN +L A ++ S+ +Y DP S+ G + R FL++S+ DL +L+
Sbjct: 3 LRLHDNPALQEALRDATSLRCIYILDPWFAASSAVGIN-----RWRFLLQSLEDLDNSLR 57
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
S L V G+P V L K G + + + + I K+ G+EV
Sbjct: 58 KLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIE 117
Query: 254 WGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRGDVEPGD- 310
TLY LD + G P Y F+ + +E+ +K + + + + D++
Sbjct: 118 NSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHD 177
Query: 311 ----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK------FAAEYQAQPPK 360
+PSL +LG + G PA +GGETEAL RL K + A Y+ P+
Sbjct: 178 DVYGVPSLEELGFP-----TDGLAPAV--WQGGETEALARLDKHLERKAWVANYER--PR 228
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
N + S G +SP+L GCLS R + L + + + S+
Sbjct: 229 MNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV---------KRNSTPP 273
Query: 421 GSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 274 LS--LYGQLLWREFF 286
>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
Length = 553
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 127/319 (39%), Gaps = 33/319 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ + WFR LR+HDN SL + ++ DP G S+ +K FL+E
Sbjct: 11 KQVVHWFRKGLRLHDNPSLKDGLKGCSTYRCIFILDPWFAGSSNVDINK-----WRFLLE 65
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ DL +NL+ S L V G+P VL +L K + + ++ I
Sbjct: 66 SLEDLDQNLRKLNSRLFVIRGQPAGVLPKLFKEWETTCLTFEEDPEPFGRVRDQNIITMC 125
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV------EIRKTIEALDQ 296
KD IEV TLYH + K G+ P Y F+ + V E T E++ +
Sbjct: 126 KDFNIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNIIASVDAPPPPESDITFESIGR 185
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
+ +P+L +LG M PA GGETEAL RL++
Sbjct: 186 GYTPMDESMDDRFSVPTLEELGFDTDGLM-----PAV--WHGGETEALTRLERHLERKAW 238
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
G S+ + +SP+L GCLS R +L I A +
Sbjct: 239 VASFGRPKMTPQSLLAS--QTGLSPYLRFGCLSVRLFHQQLTNLYKKIKKA------QPP 290
Query: 417 SSGAGSNWLMFELLWRDFF 435
S G ++LWR+FF
Sbjct: 291 LSLHG------QVLWREFF 303
>gi|420691989|ref|ZP_15175191.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
gi|391568598|gb|EIS16299.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
Length = 467
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + E+ SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 138/313 (44%), Gaps = 38/313 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFD---PRDYGKSSSGFDKTGPYRASFLIE 183
++WFRNDLR+ D+ +L A + +LP+Y D P+ + K G +L +
Sbjct: 7 VLWFRNDLRLGDHAALVAAVHTGAPILPLYILDDASPKQW--------KMGGASHWWLDK 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L +L +RG LV+R G ET L+ + + GA AVY R V E++++ +
Sbjct: 59 SLAALAGDLASRGGPLVLRRGDSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTKL 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPS 302
D + + F G L +D+ G Y F R +K + K++ A +++ L
Sbjct: 119 DDANVACRRFGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPAKSVRAPERIATLEK 178
Query: 303 RGDVEPGDIPSLLDLGLS-QSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ E L D L Q S+G A + + GE A +RL F +
Sbjct: 179 QPKSE-----RLRDWALHPQKPDWSKG---FAAAWQPGEAGARKRLSDFV---RTALKSY 227
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D N + G + ++SP LA G +SP + + G++ S
Sbjct: 228 ARDRNCPATPG---TSRLSPHLAFGEISPAACWHAAAHAG-----------GKTNGSDNA 273
Query: 422 SNWLMFELLWRDF 434
+ + ELLWR+F
Sbjct: 274 AETFLKELLWREF 286
>gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
Length = 654
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 128/275 (46%), Gaps = 24/275 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
++VWFR DLR+HDN +L A E SVLP++ + P DY ++ P R S +L +
Sbjct: 7 TVVWFRRDLRIHDNPALAAAAKEG-SVLPLFIWCPADY-------EQYYPGRCSRWWLKQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETV--LVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S++ L K+L+ G LV+ + T+ L+E I A V +R + ++KI+
Sbjct: 59 SLAHLGKSLELLGCPLVLIRAEDSTLATLLECVHCISATRVVYNRLYDPISLVLDDKIKN 118
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV--EIRKTIEALDQLKG 299
+ GI V+ F G LY D+ + G+ T++ + EK V EI + + A +L
Sbjct: 119 ELSAHGISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYL-APTRLVA 177
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P +V S+ DLGL S + + + G A L++F + +
Sbjct: 178 APGLANVR---CCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFLSCGLLEYS 234
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K H G + +SP+L G LS R ++
Sbjct: 235 K------HGMKVGGTTTSLLSPYLHFGELSVRKVY 263
>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM10+]
gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
str. 91001]
gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|384122926|ref|YP_005505546.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|384126809|ref|YP_005509423.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|384139466|ref|YP_005522168.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|384415591|ref|YP_005624953.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420553020|ref|ZP_15050328.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|420558580|ref|ZP_15055192.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|420564034|ref|ZP_15060048.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|420569077|ref|ZP_15064628.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|420574726|ref|ZP_15069742.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|420580056|ref|ZP_15074582.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|420585384|ref|ZP_15079413.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|420590518|ref|ZP_15084031.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|420595913|ref|ZP_15088884.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|420601535|ref|ZP_15093889.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|420606977|ref|ZP_15098798.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|420612394|ref|ZP_15103667.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|420617756|ref|ZP_15108361.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|420623037|ref|ZP_15113090.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|420628142|ref|ZP_15117725.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|420633265|ref|ZP_15122327.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|420638464|ref|ZP_15126998.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|420643927|ref|ZP_15131964.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|420649220|ref|ZP_15136767.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|420654878|ref|ZP_15141852.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|420660347|ref|ZP_15146762.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|420665638|ref|ZP_15151502.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|420670533|ref|ZP_15155959.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|420675883|ref|ZP_15160827.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|420681492|ref|ZP_15165902.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|420686803|ref|ZP_15170634.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|420697804|ref|ZP_15180306.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|420703521|ref|ZP_15184921.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|420708992|ref|ZP_15189669.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|420714448|ref|ZP_15194540.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|420719947|ref|ZP_15199279.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|420725437|ref|ZP_15204083.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|420731042|ref|ZP_15209109.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|420736060|ref|ZP_15213644.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|420741538|ref|ZP_15218567.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|420747183|ref|ZP_15223377.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|420752691|ref|ZP_15228251.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|420758346|ref|ZP_15232871.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|420763706|ref|ZP_15237496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|420768947|ref|ZP_15242208.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|420773944|ref|ZP_15246722.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|420779527|ref|ZP_15251652.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|420785120|ref|ZP_15256548.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|420790313|ref|ZP_15261192.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|420795823|ref|ZP_15266149.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|420800878|ref|ZP_15270687.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|420806252|ref|ZP_15275550.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|420811580|ref|ZP_15280347.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|420817125|ref|ZP_15285344.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|420827514|ref|ZP_15294673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|420833231|ref|ZP_15299841.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|420838075|ref|ZP_15304220.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|420843257|ref|ZP_15308919.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|420848911|ref|ZP_15314004.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|420854494|ref|ZP_15318773.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|420859777|ref|ZP_15323386.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|421764191|ref|ZP_16200983.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
pestis KIM10+]
gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Microtus str. 91001]
gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342854595|gb|AEL73148.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|391425862|gb|EIQ88096.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|391426528|gb|EIQ88704.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|391439765|gb|EIR00390.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|391441270|gb|EIR01775.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|391444732|gb|EIR04924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|391456609|gb|EIR15620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|391457600|gb|EIR16526.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|391459970|gb|EIR18708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|391472759|gb|EIR30190.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|391474551|gb|EIR31831.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|391475170|gb|EIR32394.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|391488956|gb|EIR44747.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|391490139|gb|EIR45813.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|391491571|gb|EIR47119.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|391504403|gb|EIR58496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|391505077|gb|EIR59114.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|391509951|gb|EIR63528.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|391520393|gb|EIR72946.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|391522601|gb|EIR74982.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|391523660|gb|EIR75952.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|391535615|gb|EIR86673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|391538245|gb|EIR89065.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|391540465|gb|EIR91089.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|391553518|gb|EIS02837.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|391553991|gb|EIS03271.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|391554886|gb|EIS04092.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|391569662|gb|EIS17221.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|391575381|gb|EIS22105.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|391582438|gb|EIS28195.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|391585186|gb|EIS30620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|391595896|gb|EIS39892.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|391598485|gb|EIS42198.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|391599985|gb|EIS43553.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|391612885|gb|EIS54907.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|391613474|gb|EIS55439.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|391617393|gb|EIS58941.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|391625715|gb|EIS66174.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|391632048|gb|EIS71614.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|391636532|gb|EIS75549.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|391638938|gb|EIS77685.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|391648656|gb|EIS86143.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|391652615|gb|EIS89658.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|391657171|gb|EIS93708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|391661578|gb|EIS97608.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|391669556|gb|EIT04679.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|391678828|gb|EIT13013.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|391679816|gb|EIT13915.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|391680593|gb|EIT14621.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|391692750|gb|EIT25559.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|391697437|gb|EIT29832.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|391708633|gb|EIT39878.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|391713085|gb|EIT43895.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|391713730|gb|EIT44474.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|391725197|gb|EIT54686.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|391726962|gb|EIT56244.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|391729089|gb|EIT58115.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|411175505|gb|EKS45531.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
Length = 487
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + E+ SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|28868336|ref|NP_790955.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|422659492|ref|ZP_16721917.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|28851573|gb|AAO54650.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331018110|gb|EGH98166.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 482
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 135/318 (42%), Gaps = 42/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + ++ + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLATLCKQFKVEGLHLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
+M+ +G+ HLD L FK G + T G + + + K V + +A+ +
Sbjct: 116 SMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTV 168
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P +P I S D Q S K + GE EA +R++ FA E Q
Sbjct: 169 HTPEAQ--QPLSIKS--DAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGE-QISY 223
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K +D + ++S +LA G +SPR + AA N GE +
Sbjct: 224 YKDERD-----FPARPGTSQLSAYLAAGVISPRQ----------CLHAALASNQGEFETG 268
Query: 419 GAGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 269 DVGTVTWINELLWREFYK 286
>gi|428213636|ref|YP_007086780.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
gi|428002017|gb|AFY82860.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
Length = 479
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 19/219 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L TA +S ++ V+C DP G D P R +++ ++
Sbjct: 6 LFWHRRDLRITDNIGLATAFEKSRKLVGVFCLDP----NILKGAD-IAPARVKYMLGCLA 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++N GS L + +P + +LA A+ A VY + ++ ++ + +A+K++
Sbjct: 61 ELQENYAKIGSQLFILFDEPRQAIAQLATALQAQFVYWNLDIEPYSQDRDQAVRSALKEQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR---------EKVKGVEIRKTIEALDQL 297
GI V+ FW L+ ++ G T Y F E G+E ++ +Q
Sbjct: 121 GIAVETFWDQLLHFPGEICSNTGNPYTVYTPFWKNWIRQTKAEPAPGLEQAISLTEAEQE 180
Query: 298 KGLPSRGDVEPGDIPSLLDLGLS-QSAAMSQGGKPAANS 335
+ + G+V +P+L DLGLS + M + G+ AA S
Sbjct: 181 RA-KNAGEVA---LPTLKDLGLSWDNPLMLEPGESAARS 215
>gi|358394234|gb|EHK43635.1| photolyase [Trichoderma atroviride IMI 206040]
Length = 953
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 141/365 (38%), Gaps = 70/365 (19%)
Query: 130 FRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDYGKSSSGFD-KTGPY--------- 176
R DLR DN L+TA + +LPVY P S D KT PY
Sbjct: 11 MRRDLRTSDNPILHRLSTAEHGFTHLLPVYILPPDQMEVSGLVKDGKTSPYPPARFHLSQ 70
Query: 177 -------RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD-------AV 222
RA F+ ES+ DL+ NL+ GS LV+RVG + VL + + A+ AV
Sbjct: 71 RWKCGHLRAKFIAESLWDLKGNLENLGSGLVIRVGAFDGVLSGIIQHYAANQHGPQVTAV 130
Query: 223 YAHREVSHDEVKSEEKIEAAMKDEGIE------VKYFWGSTLYHLDDLPFKLGEMPTNYG 276
+ + S D+ EE + A IE VKY L ++ + +P ++
Sbjct: 131 WMTEDYSPDQQGEEEAVSAICDAHAIEFLRLYDVKYLLHDI--QLPEIETGIDRLPDSFD 188
Query: 277 GFREKVKG----------VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ----- 321
F +K + R ++ + LP + P +IP L+ GL Q
Sbjct: 189 LFWRALKTKAENPLDPVPLVTRSSLPSFPDHASLPPQES--PFEIPDTLE-GLIQKLQSP 245
Query: 322 -SAAMSQGGKP------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNH---DSIY 371
M +P ++ GGET QR++ KG H D ++
Sbjct: 246 VQLPMVHLDRPELRDAAMPQALLGGETRGQQRVRYIIK-------KGIASSYHLLLDDVH 298
Query: 372 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 431
+ + P+LA+GC++ R + EL K G AG+ + + LL
Sbjct: 299 VGDGDHGLQPYLALGCITARQVHQELLKLECGTDPGLAQTMGFGRGRSAGTRSIRYHLLV 358
Query: 432 RDFFR 436
+F R
Sbjct: 359 LNFIR 363
>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
PB1/+]
gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
Length = 487
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 137/315 (43%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 KTRHAPPV-LLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + ES SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ESADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|420547711|ref|ZP_15045581.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
gi|391424563|gb|EIQ86924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
Length = 487
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAIPCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + E+ SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|448381750|ref|ZP_21561726.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
gi|445662831|gb|ELZ15594.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
Length = 468
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 129/310 (41%), Gaps = 35/310 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ W R DLR DN L A + SV+P++ DP + D P R + L+E++
Sbjct: 2 NVFWHRRDLRPDDNRGLARAAAANESVVPLFVLDP-------TVLDHASPVRVATLLEAL 54
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DLR + RGSDL+V G+ V+ E+A A V + + S + + + AA++D
Sbjct: 55 EDLRSQYRERGSDLLVVRGEASAVVPEVAAEYDATTVVWNEDYSGLARERDRAVRAALED 114
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
EGI + + + + G+ + + F +K + + R+ D P G
Sbjct: 115 EGIAAESVHDAIHHEPGSITPNQGDHYSVFSYFWKKWRDRDKREPAAEPDADDLAPVSG- 173
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
EP IP+L DLG + A AA +++ A++ + P D
Sbjct: 174 -EP--IPTLSDLGFDEPEATPPTVTTAA-------------AREWVADFCSGPIYDYADR 217
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
+ + ++SP L G + PR ++ ++ A ES
Sbjct: 218 R--DYPAESGTSRLSPQLKWGTIGPRELYVATERAAER---------AESDDDRESVREF 266
Query: 426 MFELLWRDFF 435
+L WR+F+
Sbjct: 267 QRQLAWREFY 276
>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
8102]
Length = 477
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 138/318 (43%), Gaps = 37/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A S +V VY DP+ S P R FLIES+
Sbjct: 7 LFWHRRDLRLTDNLGLAAAAAISPAVTGVYVLDPQVISPSEHLL-PMAPARLWFLIESLI 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ + GS L+V G P +L +LA+ I A+AV +R+V + + ++ ++ +
Sbjct: 66 ELQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEAVVWNRDVEPYARERDRQVAQRLQAD 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G +V W L + L G+ YG F +G K + GL D+
Sbjct: 126 GRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVTVPAPAGLV---DL 182
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA--AEYQAQPPKGNKD 364
+P +PS L + + +G + + GE A+Q+L F A + +P D
Sbjct: 183 DPAAVPSGEPLMARRDSHGFKGTE--LCPCRPGEAAAMQQLTSFCDGALFGYEP-----D 235
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFD------ELKKTATSISAASKWNDGESGSS 418
N + G ++ +S L++G LSPR + E ++ + A + W
Sbjct: 236 RNFPGVVGTSY---LSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQ------ 286
Query: 419 GAGSNWLMFELLWRDFFR 436
EL WR+F++
Sbjct: 287 ---------ELCWREFYQ 295
>gi|28279917|gb|AAH44204.1| Cry5 protein, partial [Danio rerio]
Length = 545
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 143/321 (44%), Gaps = 41/321 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN +L A + + P++ DP + K++ + G R FLIE++
Sbjct: 31 TIHWFRKGLRLHDNPALIAALKDCRHIYPLFLLDPW-FPKNT----RIGINRWRFLIEAL 85
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G P VL +L K + + ++++ K+
Sbjct: 86 KDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKE 145
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEAL--DQLKGLP 301
G+EV TLY++D + + G+ P Y + VK + +K I A + ++G+
Sbjct: 146 YGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDMRGVS 205
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE----Y 354
S E IP+L DLGL S+ + GGE EAL+RL +
Sbjct: 206 TPLSDDHEEKFGIPTLEDLGLDTSSL-------GPHLFPGGEQEALRRLDEHMERTNWVC 258
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ + PK + + S + +SP++ GCLS R + L G+
Sbjct: 259 KFEKPKTSPNSLIPS------TTVLSPYVRFGCLSARIFWWRLADVYR----------GK 302
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
+ S S L +LLWR+FF
Sbjct: 303 THSDPPVS--LHGQLLWREFF 321
>gi|149635020|ref|XP_001507425.1| PREDICTED: cryptochrome-2 [Ornithorhynchus anatinus]
Length = 582
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 135/314 (42%), Gaps = 44/314 (14%)
Query: 135 RVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQA 194
R+HDN +L A + SV VY DP SS G + R FL++S+ DL +L+
Sbjct: 20 RLHDNPALQAALRGARSVRCVYILDPWFAASSSVGIN-----RWRFLLQSLEDLDTSLRK 74
Query: 195 RGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254
S L V G+P V L K G + + + + I K+ G+EV
Sbjct: 75 LNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTEN 134
Query: 255 GSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEAL--DQLKGLPSRGDVEPGD 310
TLY LD + G+ P Y F+ + +E+ +K + + Q++G + D
Sbjct: 135 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVSCVTSQQMEGCKAEIQDNHDD 194
Query: 311 ---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAAEYQAQPPKG 361
+PSL +LG + G PA +GGETEAL RL K + A Y+ P+
Sbjct: 195 TYGVPSLEELGFP-----TDGLGPAV--WQGGETEALARLDKHLERKAWVANYER--PRM 245
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
N + S G +SP+L GCLS R + L + K N S
Sbjct: 246 NANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRNSTPPLS---- 291
Query: 422 SNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 292 ---LYGQLLWREFF 302
>gi|424793391|ref|ZP_18219508.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796635|gb|EKU25108.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 473
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR DLR+HD+ +L+ A + +PVY P D G ++G S+L ++
Sbjct: 4 AIVWFRRDLRLHDHPALHAALAAGHTPVPVYVHSPGDEGAWAAGAASL-----SWLQRAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L LQARGS L++R G ETVL EL GA AVY +R + +++ ++
Sbjct: 59 AALDAQLQARGSRLILRQGPAETVLRELIAECGAVAVYWNRRYEPATQPRDARLKRELRA 118
Query: 246 EGIEVKYFWGSTLY 259
+G+EV + G+ L+
Sbjct: 119 QGLEVHSYNGALLF 132
>gi|398860974|ref|ZP_10616615.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM79]
gi|398233993|gb|EJN19889.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM79]
Length = 493
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 141/325 (43%), Gaps = 56/325 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A SV VY P+ + P + F + ++
Sbjct: 14 LIWLRSDLRLHDNTALSAAAARGPSV-AVYLLSPQQWLAHDD-----APCKVDFWLRNLG 67
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+LR L A L++R + VL+EL + + AV+ + E E + + +
Sbjct: 68 ELRHALDALNIPLLIRKASRWDEAPKVLLELCQQLKIGAVHVNEEYGIHETRRDAAVAQI 127
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +GI+ + LD L K G + T G + + + + V + +L +L
Sbjct: 128 LKAQGIDFYSY-------LDQLLLKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPRLVT 180
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK----GGETEALQRLKKFAAE-- 353
P+ I + L + + + +G ++S++ GETEA +RL+ F
Sbjct: 181 APA--------IQAPLGIASDEPPSRVEGFDTPSDSLRALWPAGETEARRRLETFTDTQI 232
Query: 354 --YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
Y ++ K G + ++S +L G +SPR + AA + N
Sbjct: 233 DYYHSERDFPAKPG----------TSQLSAYLTAGVISPRQ----------CLHAALQSN 272
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
GE S G+ + ELLWR+F++
Sbjct: 273 QGEFESGKVGAVTWINELLWREFYK 297
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 19/267 (7%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A+IVWFRNDLR+ D+ +L A V+ ++ D +++G K G +L +S
Sbjct: 8 ATIVWFRNDLRLCDHPALTAAVKRGGPVIALFVLD-----DAAAGCWKLGGASRWWLAKS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L ++ RG+ L++R G E++L L GA AVY R EEK+ +
Sbjct: 63 LEALSHDIAQRGARLILRRGDTESILKRLVDESGATAVYVTRGYEPWAKGLEEKLHKSFG 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPSR 303
G+ K F G L +DL G + F R K K + A L +P
Sbjct: 123 GSGVVFKRFGGRLLREPEDLRTSSGAAYQVFTPFWRVFRKEFSAPKALAAPRHLGPVPD- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
+ DI D L+ + GG A + + GE A RLK F +E + N
Sbjct: 182 -AIASDDIS---DWKLAPTKPDWSGG--LAEAWRPGERGAQLRLKNFVSEGLS-----NY 230
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSP 390
D D + A + ++SP LA G +SP
Sbjct: 231 DDGRDRL-NAEGTSRLSPHLAFGEISP 256
>gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max]
Length = 642
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 32/277 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALTAAAKEG-SVLPVYVWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K V++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHVQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG-----GETEALQRLKKFAAEYQAQ 357
G +E SL +LGL ++ KP +N++ G G A + L++F +
Sbjct: 177 EGKIEEC---SLEELGLE-----NESEKP-SNALLGRAWSPGWRNADRALREFVELHLLH 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K G + +SP+L G LS R +F
Sbjct: 228 YSKKRLK------VGGESTSLLSPYLHFGELSARKVF 258
>gi|86196738|gb|EAQ71376.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15]
Length = 793
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 153/365 (41%), Gaps = 55/365 (15%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNES----VSVLPVYCF-----------------D 159
A R I FR DLRV DN L+ + +LPVY F
Sbjct: 2 APRNVLIYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKS 61
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P +S +G+ + GPYRA F+ ++V D++ +L++ S L++R+G + VL L +
Sbjct: 62 PYPEARSKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLK 121
Query: 219 AD----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EM 271
A +V+ E +E++ E I + G + + Y +DD E+
Sbjct: 122 ARGDTCSVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEK-YFIDDRDLNFAEPQEL 180
Query: 272 PTNYGGFREKVKGV--EIRKTIEA--LDQLKGLPSRGDV----EPGDIPSLLDLGLSQS- 322
P + +R+ V+ + RK++ D L P + P IP + G +
Sbjct: 181 PGIFTDYRKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYE-GFETAL 239
Query: 323 --AAMSQGGKP---------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY 371
G P A+ KGGET +RL+ + + K +++G +
Sbjct: 240 LKPVKDFSGAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNG----LI 295
Query: 372 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 431
G +FS K+S +LA GC++ R + + L +A + +G + + EL+W
Sbjct: 296 GPDFSTKLSAYLAQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMW 355
Query: 432 RDFFR 436
RD+ R
Sbjct: 356 RDYMR 360
>gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|423699267|ref|ZP_17673757.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q8r1-96]
gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|387996309|gb|EIK57639.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q8r1-96]
Length = 483
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 141/325 (43%), Gaps = 56/325 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L A + V VY P + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALAAAAAQGPCV-AVYLTSPEQWRAHDDA-----PCKIDFWLRNLG 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L L L++R + VL++L + + AV+ + E +E + + ++
Sbjct: 57 ALSATLAELNIPLLIRAAAHWHQAPQVLLKLCRELNVGAVHVNEEYGLNETRRDAEVARV 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ D+G+E HLD L FK G + T G + + + + V + +L L
Sbjct: 117 LNDQGVEFHS-------HLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLVA 169
Query: 300 LPSR---GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG----GETEALQRLKKFAA 352
P+R + +P+ +D G P + +++ GETEA +RL F
Sbjct: 170 TPARQALTGIARDPVPTQVD-----------GFAPPSEALRALWPAGETEARRRLDTFVD 218
Query: 353 EYQAQPPKGNKDGNHDSIYGAN-FSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
++ +G +D Y A + ++S +L G +SPR + AA + N
Sbjct: 219 QH-IDDYQGERD------YPARPGTSQLSAYLVAGVVSPRQ----------CLHAALQAN 261
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
GE S AG+ + ELLWR+F++
Sbjct: 262 QGEFESGSAGAVTWINELLWREFYK 286
>gi|217976568|ref|YP_002360715.1| deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
Length = 486
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 139/311 (44%), Gaps = 31/311 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR+DLR+ DNE+L A + +L VY + ++GF G +L S+
Sbjct: 10 AIVWFRDDLRLADNEALAAALSTGGPLLCVYILE-----DGTAGFRPLGGAARWWLHHSL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L +++ A+G L + G+ +L LA+A GA + R E+ + ++A K
Sbjct: 65 QALGQDIAAKGGRLDLFCGEARRILPALAEAAGARIICWTRRYGGPEMAVDAALKAQFKT 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLP-SR 303
G+E K F G L+ D+ G Y + R ++ + + A D+L P R
Sbjct: 125 SGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPAPDRLPAAPIPR 184
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
G + I +L L A GG AA + GE A +RLK F + + +
Sbjct: 185 GALRTTSIEALALLPEKPDWA---GGLRAA--WRPGENGAQERLKAF---LEGEIASYSL 236
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ N S A+ ++SP L G + PR +F ++ + W++ ++ G
Sbjct: 237 ERNRPS---ADAVSRLSPHLRFGEIGPRQIFAAVR---------TAWDN----AAQKGGV 280
Query: 424 WLMFELLWRDF 434
+ EL WR+F
Sbjct: 281 KFLAELGWREF 291
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 49/322 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP + SG D P R ++++ +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----EILSG-DDIAPVRVAYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA A+Y +R+V + + +E ++ +
Sbjct: 61 CLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLK--G 299
GI+V+ FW L H + F + P KV RK I E +LK G
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCQRLKSTG 172
Query: 300 LP---SRGDVEPGDI--PSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
L + +E G I P+ DLG S ++ GET A RL+ F
Sbjct: 173 LTEAQEKAALEAGAIALPTAKDLGFIWSEPF---------ILEPGETAASDRLEIFCDRA 223
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ +G N +I G + +SP L G + R+++ + ++ I A ++ ++
Sbjct: 224 IYEYDEGR---NFPAIDGTSV---LSPALRFGAIGIRTLWQKTQE----IMALTRSDEAR 273
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 274 HHI----QTWQQ-ELAWREFYQ 290
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 5/152 (3%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A ++ V+ V+C DP + D P R +++I +
Sbjct: 6 LFWHRRDLRISDNVGLAVARQQTQKVVGVFCLDPNILER-----DDVAPARVTYMIGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS+L++ +P T + +LA+++ A AV+ + +V + + I AA+K++
Sbjct: 61 SLQQRYAEVGSELLILFNEPTTAIPKLAESLNAKAVFWNWDVEPYAKERDRTILAALKEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF 278
GI + FW L+ +++ G+ T Y F
Sbjct: 121 GIATQNFWDQLLHSPEEIRSGSGQPYTIYTPF 152
>gi|440472686|gb|ELQ41536.1| cryptochrome DASH [Magnaporthe oryzae Y34]
gi|440482685|gb|ELQ63153.1| cryptochrome DASH [Magnaporthe oryzae P131]
Length = 770
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 153/365 (41%), Gaps = 55/365 (15%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNES----VSVLPVYCF-----------------D 159
A R I FR DLRV DN L+ + +LPVY F
Sbjct: 2 APRNVLIYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKS 61
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P +S +G+ + GPYRA F+ ++V D++ +L++ S L++R+G + VL L +
Sbjct: 62 PYPEARSKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLK 121
Query: 219 AD----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EM 271
A +V+ E +E++ E I + G + + Y +DD E+
Sbjct: 122 ARGDTCSVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEK-YFIDDRDLNFAEPQEL 180
Query: 272 PTNYGGFREKVKGV--EIRKTIEA--LDQLKGLPSRGDV----EPGDIPSLLDLGLSQS- 322
P + +R+ V+ + RK++ D L P + P IP + G +
Sbjct: 181 PGIFTDYRKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYE-GFETAL 239
Query: 323 --AAMSQGGKP---------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY 371
G P A+ KGGET +RL+ + + K +++G +
Sbjct: 240 LKPVKDFSGAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNG----LI 295
Query: 372 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 431
G +FS K+S +LA GC++ R + + L +A + +G + + EL+W
Sbjct: 296 GPDFSTKLSAYLAQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMW 355
Query: 432 RDFFR 436
RD+ R
Sbjct: 356 RDYMR 360
>gi|389646117|ref|XP_003720690.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
gi|351638082|gb|EHA45947.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
Length = 826
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 153/365 (41%), Gaps = 55/365 (15%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNES----VSVLPVYCF-----------------D 159
A R I FR DLRV DN L+ + +LPVY F
Sbjct: 58 APRNVLIYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKS 117
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P +S +G+ + GPYRA F+ ++V D++ +L++ S L++R+G + VL L +
Sbjct: 118 PYPEARSKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLK 177
Query: 219 AD----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EM 271
A +V+ E +E++ E I + G + + Y +DD E+
Sbjct: 178 ARGDTCSVWMVGEEGLEEIQDEISISNVCRTRGYDFEKL-VDEKYFIDDRDLNFAEPQEL 236
Query: 272 PTNYGGFREKVKGV--EIRKTIEA--LDQLKGLPSRGDV----EPGDIPSLLDLGLSQS- 322
P + +R+ V+ + RK++ D L P + P IP + G +
Sbjct: 237 PGIFTDYRKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYE-GFETAL 295
Query: 323 --AAMSQGGKP---------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY 371
G P A+ KGGET +RL+ + + K +++G +
Sbjct: 296 LKPVKDFSGAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNG----LI 351
Query: 372 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 431
G +FS K+S +LA GC++ R + + L +A + +G + + EL+W
Sbjct: 352 GPDFSTKLSAYLAQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMW 411
Query: 432 RDFFR 436
RD+ R
Sbjct: 412 RDYMR 416
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
Length = 558
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 134/324 (41%), Gaps = 41/324 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
R+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL+
Sbjct: 53 RKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNVGINK-----WRFLL 107
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+ + DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 108 QCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISAL 167
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVE-----IRKTIEALDQ 296
K+ GI V TLY LD++ K G+ P Y F+ V +E + A
Sbjct: 168 CKELGISVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVASMEPPEPPVLTVTSACIG 227
Query: 297 LKGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P + D + +P+L +LG ++G P GGE+EAL RL++
Sbjct: 228 SAYTPLKDDHDDHYGVPTLEELGFD-----TEGLLPPV--WVGGESEALARLERHLERKA 280
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASKWN 411
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 281 WVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAMPPLS--- 335
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 336 -------------LHGQLLWREFF 346
>gi|422651895|ref|ZP_16714685.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330964968|gb|EGH65228.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 482
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 134/318 (42%), Gaps = 42/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAALQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + ++ + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
AM+ +G+ HLD L FK G + T G + + + K V + EA+ +
Sbjct: 116 AMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTV 168
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P +P I S D Q S K + GE EA +R++ FA E Q
Sbjct: 169 HTPEAQ--QPLSIKS--DAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADE-QISY 223
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K +D + ++S +L G +SPR + AA N GE +
Sbjct: 224 YKDERD-----FPAKPGTSQLSAYLVAGVISPRQ----------CLHAALASNQGEFETG 268
Query: 419 GAGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 269 DVGTVTWINELLWREFYK 286
>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
Length = 481
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 132/320 (41%), Gaps = 46/320 (14%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFR+DLR+ DN +L+ A +E V+ V+ P+ + P +A+FL +++
Sbjct: 5 LVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHD-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDL----VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L RG L L + + DA++ +++ +E++ +E
Sbjct: 60 HLLQAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ I F S L + EM + FR + ++ K
Sbjct: 120 QLNRRSIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQ 179
Query: 302 SRGDV-----EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
+ G + EP D P Q + SQ GE ALQRL+ F E Q
Sbjct: 180 NAGAITLTPLEPFDYP--------QQSVDSQ-------LFPAGEEAALQRLRSFCRE-QV 223
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
Q +D + + +SP+LA+G LSPR F+ L+ + ES
Sbjct: 224 QDYLQQRD-----LPAVAGTSGLSPYLALGILSPRQCFNRLRAECPDLL--------ESS 270
Query: 417 SSGAGSNWLMFELLWRDFFR 436
SGA + WL EL+WR+F+R
Sbjct: 271 DSGAFT-WLN-ELIWREFYR 288
>gi|452819916|gb|EME26966.1| DNA photolyase / blue-light receptor 2 [Galdieria sulphuraria]
Length = 395
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 28/286 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDP--------RDYGKSSSGFDKTGPY- 176
+IVW R +LR+HDN +L A +LP++ + +D + S + Y
Sbjct: 81 AIVWLRRELRLHDNIALVEAVKSYRRILPLFIHESVSMTHQKRKDEDRGSCLLSEDLLYE 140
Query: 177 ----RASFLIESVSDLRKNLQARGSDLVVRVGKPET-VLVELAKAIGADAVYAHREVSHD 231
L + DLRK + GSDL+V V L+EL ++ A +Y + +
Sbjct: 141 DLSQEHDLLEMCLKDLRKQFRQLGSDLLVIVSNNAVESLLELIRSTRAQGLYFYNSIFAK 200
Query: 232 EVKSEEKIEAAM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
E K E +++ + + + + FW +TL+ D L K + F + + E+ K
Sbjct: 201 ERKQELELKQRLDSNTSVNIYTFWTNTLHPFDKLISKSTLHLEDCDQFGQYIHNWEVPKD 260
Query: 291 IEALDQLKGLP-SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK 349
I + + LK P R D D LD + S +Q K ++ + E EAL RL +
Sbjct: 261 IPSPEYLKPFPYDRLD----DSKYKLDFDIISSC--NQELKQKSHVLAVSEREALSRLTE 314
Query: 350 FAAEYQAQPPKGNKD-GNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
F + + D D+ YG +++P+L++GC+S R++F
Sbjct: 315 FVSSQTCGWIQHYPDEAMIDTKYG-----RMNPYLSLGCISMRTIF 355
>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
Length = 474
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 127/318 (39%), Gaps = 49/318 (15%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R I W R DLR+ DN +L A ++P+Y D ++ +R +E
Sbjct: 5 RPVIWWIRRDLRLRDNPALRAAQEAGGPIIPLYIHDAQE-----EALGAAPKFRLGLGLE 59
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ K L+ +GS L+VR G VL E+ GA V R K + KI+ A+
Sbjct: 60 RFA---KTLEEKGSRLIVRRGDALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEAL 116
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
K I+ K G L+ + K G M Y F K V R E L PSR
Sbjct: 117 KASDIKAKSTGGRLLFEPWTVDTKDGGMYRVYTPF---WKAVRTRDVAE----LTAAPSR 169
Query: 304 GDVEPGDIPS---LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE----YQA 356
P PS L DLG+ AAM +GG A + GE AL +L F E Y+A
Sbjct: 170 L-AAPESWPSGEALADLGM--DAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKA 226
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
H + ++S LA G +SP M+ A DG+ G
Sbjct: 227 ----------HRDFPARAATSELSENLAWGEISPHRMWH---------LGAQAMQDGQPG 267
Query: 417 SSGAGSNWLMFELLWRDF 434
+ + E++WR+F
Sbjct: 268 AEH-----FLKEVVWREF 280
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 138/324 (42%), Gaps = 51/324 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S V+ V+C DP + D P R ++++ +
Sbjct: 6 LFWHRRDLRIADNTGLAAAQRQSPKVVGVFCLDPDILER-----DDIAPARVTYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS L++ G P V+ +LA+A+ A AV+ + +V K + I ++ ++
Sbjct: 61 ALQERYIQAGSQLLILHGPPVVVIADLAEALKAKAVFWNWDVEPYSQKRDRTIINSLTEK 120
Query: 247 GIE-VKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGLPS-- 302
GI+ + W L+ +++ F + P T Y F + K +E L+ +GL +
Sbjct: 121 GIQFLNQNWDQILHSPEEI-FSGAKTPYTVYTPFWKNWSSKPKAKPVETLENAEGLTADE 179
Query: 303 ------RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----A 352
G +E +PS DLG + + GE A RL+ F
Sbjct: 180 QEIAKLAGAIE---LPSAKDLGFVWEGEL---------VISPGEAAAQARLEAFTNNAIT 227
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
EYQ Q DG + ++S L G + R+++ +I A +
Sbjct: 228 EYQEQRNFPAVDG----------TSQLSAALKFGVIGIRTVWQ------ATIEALE---N 268
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
SG + A EL WR+F++
Sbjct: 269 SRSGETEASIRTWQQELAWREFYQ 292
>gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
YPIII]
gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis
YPIII]
Length = 487
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWATHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + E+ SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
Length = 472
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 52/317 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR+ D+ +L A + V+PV+ D G +R ++S
Sbjct: 7 TLVWFRRDLRLSDHAALTEAASGG-PVIPVFIRD-----ALVDGLGTAPQWRLGLGLKSF 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
++ L+A+GS L++R G VL EL GA AVY R D V + +++ +K
Sbjct: 61 AE---ALEAKGSRLILRSGPAVEVLSELVNETGAKAVYWSRAYDPDSVDRDTRVKETLKG 117
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+GI+ + F G L+ + G Y F + V+G ++ + + L+ + D
Sbjct: 118 DGIDAQSFTGHLLFEPWTVETGQGGFYKVYTPFWKAVRGCDVPAALSSPSDLQAPATWPD 177
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF----AAEYQAQPPKG 361
E +L D L + M +G ++ GE A RL F A+Y +
Sbjct: 178 GE-----TLADWELGK--GMRRGADVVRPYVQLGEQAAQTRLGVFMRDKVADYATTRDEV 230
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG----ESGS 417
+KDG SC +S L++G +SP A W+ G E G
Sbjct: 231 SKDGT---------SC-LSENLSLGEISP----------------AQCWHAGCRAIEDGK 264
Query: 418 SGAGSNWLMFELLWRDF 434
GA + + EL+WR+F
Sbjct: 265 PGAET--FLKELVWREF 279
>gi|349805341|gb|AEQ18143.1| putative cryptochrome dash [Hymenochirus curtipes]
Length = 168
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 23/144 (15%)
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
+ +LK LP +E G +P+ + + P + GGET+ALQRL + +
Sbjct: 3 MPKLKPLPD--GLEEGKVPTYEEFDQEDPLTDPRTAFPCS----GGETQALQRLHHYFWD 56
Query: 354 YQAQPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
PP K ++G + G ++S K++PWLA+GC+SPR +++++KK
Sbjct: 57 TNLVPPYKDTRNG----LIGLDYSTKLAPWLALGCVSPRFIYEQIKKYE----------- 101
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
+ ++ + W++FELLWRD+FR
Sbjct: 102 -QERTANQSTYWVIFELLWRDYFR 124
>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
Length = 639
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 138/324 (42%), Gaps = 43/324 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + ++ VY DP G S+ G + R FL++S+
Sbjct: 5 SVHWFRKGLRLHDNPALLEALNGADTLRCVYFLDPWFAGASNLGVN-----RWRFLLQSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P + L K + + + + I+ +
Sbjct: 60 EDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKKLACE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKTIEA------LDQLK 298
G+EV TLY LD + G+ P Y F+ V +E + + +
Sbjct: 120 AGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLSSPDRGMMGKCV 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-------FA 351
S + +P L +LG ++G PA GGE+EAL+R+++ A
Sbjct: 180 TPISENHRDKYGVPLLEELGFD-----TEGLAPAV--WPGGESEALKRMERHLGPDSTVA 232
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
+ + PK N S G +SP+L GCLS R + +L T + K N
Sbjct: 233 WQENFERPKMNASPLMASPLG------LSPYLRFGCLSCRLFYCKL----TQLYKKVKKN 282
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S S L ++LWR+FF
Sbjct: 283 MNPSIS-------LYDKILWREFF 299
>gi|255076443|ref|XP_002501896.1| predicted protein [Micromonas sp. RCC299]
gi|226517160|gb|ACO63154.1| predicted protein [Micromonas sp. RCC299]
Length = 469
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 109 GPHRPLDPNNGAAIRR---------------------ASIVWFR-NDLRVHDNESLNTAN 146
PHR L P+ RR A IVW R DLRVHD+ L+ A+
Sbjct: 34 APHRKLSPSRRGDARRSVIASSGSRPVVAASAPTHTGAHIVWIRVGDLRVHDHPGLHAAS 93
Query: 147 --NESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204
SV ++P++ FDP + ++ F + + E+V +LR L+ RG+DLVVRVG
Sbjct: 94 LLPPSVPIVPLFVFDPEEAANTTPAFQR-------LVHEAVRELRVALRDRGADLVVRVG 146
Query: 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
P T + +AK GA ++ RE+ + + AA + G+E + W + L D
Sbjct: 147 SPATHVERIAKETGASSLSCRRELEWSRMSTHRAALAAARGAGVESIHEWSAPLRECAD 205
>gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
32953]
gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia
pseudotuberculosis IP 32953]
Length = 487
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 38/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
+ P + S L Q + SQ GE ALQRL++F E Q Q +
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQ-------LFPAGEDAALQRLRRFCRE-QVQDYRQ 226
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
+D ++ G SC +SP+L +G LSPR F+ L + + E+ SGA
Sbjct: 227 YRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADSGAF 273
Query: 422 SNWLMFELLWRDFFR 436
+ WL EL+WR+F+R
Sbjct: 274 T-WLN-ELIWREFYR 286
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 122/278 (43%), Gaps = 38/278 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR DLR+ D L A E +VLPV+ DP G S G +L S+
Sbjct: 5 TIFWFRQDLRLTDLPGL-CAAAERGAVLPVFIHDP-SLGNEWS----LGGASQWWLHYSL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+ +++ARG +L++R G PE VL L + GA AVY+ R+ E + + D
Sbjct: 59 KSLQASIEARGGELILRRGAPEDVLTALIEESGASAVYSSRQYQPWATSLETTLHETLTD 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
EGI+ K + G+ L F+ G + T GG KV R ++ S
Sbjct: 119 EGIDYKRYAGTLL-------FEPGSVLTG-GGTPYKVFTPFWRACLQ---------SEAP 161
Query: 306 VEPGDIPSL-LDLGLSQSAAMSQGGKPA-ANSMKG-------GETEALQRLKKFAAEYQA 356
EP IP + +G+ + +P+ N G GE A +RL F A
Sbjct: 162 REPRSIPDVEWHVGVRSESVEDWNLRPSNPNWADGWESLWSPGEEGATRRLDDFL----A 217
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K DG I ++ ++SP L G +SPR ++
Sbjct: 218 GTVKHYGDGR--DIPAEAYTSRLSPHLKFGEISPRQIW 253
>gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
Length = 447
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 133/315 (42%), Gaps = 60/315 (19%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
F DLRVHDN L A +P++ D + SGF TG R FL ES++DL
Sbjct: 7 FTRDLRVHDNPMLTAAALAGEHTVPLFVLDA---AMARSGF-ATGA-RERFLAESLADLD 61
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
++L+ G LVVR G P + +A + A V+ + S + E + +A+ +
Sbjct: 62 RSLRELGGRLVVRAGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSALAER--- 118
Query: 250 VKYFWGSTLYHLDDLPFKLG---------EMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
G TL+ D+ + + +G + + + R+ I +L+ L
Sbjct: 119 -----GRTLHCHDEAHVVVAPGRVTPAGRDHYAVFGAYHRRWEAAGWRRVIAPPARLR-L 172
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
P+ V+PG +P + GG+ A GGET +R +++ E
Sbjct: 173 PA---VDPGALPPI---------GGPAGGESAGGGFHGGETVGRRRAEEWLREGVEV--- 217
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
D D + A+ + ++SP+L +GCLS ++ A++ G++
Sbjct: 218 --YDERRDQL-AADATSRLSPYLHLGCLS-------------ALELATQAGTGDAARD-- 259
Query: 421 GSNWLMFELLWRDFF 435
+ +L WRDFF
Sbjct: 260 ----FVRQLAWRDFF 270
>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
Length = 788
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 33/319 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN +L + + V+ DP S+ G +K +R FL++
Sbjct: 34 KHTVHWFRKGLRLHDNPALREGLVNATTFRCVFIIDPWFASSSNVGINK---WR--FLLQ 88
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L + G A+ + + I
Sbjct: 89 CLEDLDSSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNITTKC 148
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEA---LDQLKG 299
++ GI V TLY LD + + G+ P Y F+ + + + EA ++ L G
Sbjct: 149 REVGINVISRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPQPAEAPISIETLNG 208
Query: 300 LPSRGDVEPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
+ V+ D +P+L +LG ++ KP GGE+EAL RL +
Sbjct: 209 AKTPVSVDHDDRFGVPTLEELGFE-----TEDLKPPM--WMGGESEALARLDRHLERKAW 261
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
G S+ + +SP+L GCLS R + +L + I
Sbjct: 262 VASFGRPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTELYKKIKRV------RPP 313
Query: 417 SSGAGSNWLMFELLWRDFF 435
S G ++LWR+FF
Sbjct: 314 LSLHG------QILWREFF 326
>gi|374334090|ref|YP_005090777.1| deoxyribodipyrimidine photolyase [Oceanimonas sp. GK1]
gi|372983777|gb|AEY00027.1| deoxyribodipyrimidine photolyase [Oceanimonas sp. GK1]
Length = 449
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 129/316 (40%), Gaps = 45/316 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W RNDLR+ D+ + V+ ++G + G +A++L ++++
Sbjct: 3 LLWLRNDLRLDDHAGWQALADYQGKTAAVFILPAHWLTTDAAGLHRLGAAKAAYLQQALA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK-IEAAMKD 245
DL L L + G+P +L+ + + V+H EE A + D
Sbjct: 63 DLSARLAP--FPLTLLQGEPVELLLAWHR------LQPFELVTHAAQAPEEAGWLARLCD 114
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G++V L+ + + + P ++ GFR+KV+ V P
Sbjct: 115 AGVKVHTVEAQPLFEPEQIAPLFKKFPASFTGFRKKVEKV------------PAWPVPAP 162
Query: 306 VEPGDIPSL------LDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
D+ L L G+ ++ PA +GGET A L+ + E +A
Sbjct: 163 QAAADVSRLRAAACPLTTGIDWPVTPAELAHPA---WQGGETHARAWLQHYLFEQRA--- 216
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ + + + G FS +S LA GCLSPR ++ ++ + +W E
Sbjct: 217 LAHYKASRNDLAGRYFSSHLSAALAWGCLSPREVWQQI------LEYEQQWGSDEH---- 266
Query: 420 AGSNWLMFELLWRDFF 435
S WL FELLWR++F
Sbjct: 267 --SYWLRFELLWREYF 280
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 146/316 (46%), Gaps = 37/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A+ E +V+ ++C D + D R +++I +
Sbjct: 6 LFWHRRDLRISDNVGLTQASQEGQTVVGIFCLDENILKR-----DDIASARVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+K + GS L++ GKP + +LA + A AVY + +V K + +++ ++
Sbjct: 61 HLQKRYKQIGSQLLIMSGKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ--LKGLPSRG 304
I+VK FW L+ +++ + + Y F + +G +K L+ LKGL +
Sbjct: 121 NIQVKTFWEQLLHSPEEIFTSTKKPYSVYTPFWKNWQG---KKKSNPLNTPVLKGL-TED 176
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEYQAQPPK 360
++ ++DL ++ + K ++ GET AL++L+KF+ + YQ Q
Sbjct: 177 QLQYTKKIGVIDLPTAKQLGFNWDNKLI---LEPGETAALEKLEKFSNGAISSYQEQRNF 233
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
+ DG + ++S L G + R+++ + ++ + ++ + + E+
Sbjct: 234 PSLDG----------TSQLSVALKFGTIGIRTVWAKTQELIENCYSSEVFENIETWQK-- 281
Query: 421 GSNWLMFELLWRDFFR 436
E+ WR+F++
Sbjct: 282 -------EIAWREFYQ 290
>gi|400754263|ref|YP_006562631.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
gi|398653416|gb|AFO87386.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
Length = 479
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 133/314 (42%), Gaps = 47/314 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ +N +L+ A V+PV+ FD D ++ + G ++
Sbjct: 12 LWWVRRDLRLAENPALDAAVAAGAPVIPVFIFDTLDEDLGAAPRFRLG--------LGLA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L K L+ RG+ L++R G + VL +L GA A++ R + + I+ +K +
Sbjct: 64 HLAKGLERRGARLILRRGPAQEVLTQLITETGAGAIHWTRAYDPQAIARDTAIKKQLKGQ 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI K F G L+ + K G M Y + + V+ ++ D L PSR
Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDV-------DGLIAAPSRIPA 176
Query: 307 EPGDIPSLLDLGLSQSAA-MSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
P P+ DL Q AA M +G A + GE A RL +F A D
Sbjct: 177 -PAQWPASDDLDSWQLAAGMRRGADVVAQYCRVGEDAAQARLAEFLDTRVA-------DY 228
Query: 366 NHDSIYGA-NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG----ESGSSGA 420
D + A + + +S LA G +SPR M W+ G +G SGA
Sbjct: 229 KQDRDFPAVDATSGLSENLAWGEISPRRM----------------WHHGLEARRAGKSGA 272
Query: 421 GSNWLMFELLWRDF 434
+ E++WR+F
Sbjct: 273 EH--FLKEIVWREF 284
>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 483
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 127/283 (44%), Gaps = 21/283 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFR DLR+ DN++LN A+ ++PVY +P +++G G +A +L S+
Sbjct: 10 ILWFRRDLRLDDNQALNAAHLSGRPIIPVYINEP-----AAAGTGPLGAAQAWWLHHSLE 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L R +LV+ G VL + K GA+AV+ +R + + I+ ++ +
Sbjct: 65 ALDRSLHERQGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQ 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
IE + F G L+ L G Y F ++G E +EA +L+ R
Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLASQRPA 184
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
E LL K A+ GE A +RL F E + + K N+D
Sbjct: 185 SETLKSWKLL-------PTKPDWAKGFADLWTPGEQGARERLSAF-VEDELKGYKENRD- 235
Query: 366 NHDSIYGAN-FSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
Y A + +SP LA+G +SP ++D + + + AA
Sbjct: 236 -----YPAKPATSMLSPHLALGEISPARIWDATRGLSNRVPAA 273
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 145/320 (45%), Gaps = 43/320 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I W R DLR+ DN L+ A +S ++ ++C DP + D P R ++++ +
Sbjct: 6 IFWHRRDLRLSDNIGLSKAYQKSSKLVGLFCLDPNILQR-----DDIAPARVNYMLGCLR 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+++ Q G L++ G+P ++ E+AK++ + V + +V + +++++ A++++
Sbjct: 61 NLQESYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKEALQEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTN-YGGF-REKVK--GVEIRKTIEALDQL--KGL 300
GI + +W L+ ++ K P Y F R VK I ++IE LD L + +
Sbjct: 121 GITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEDKANIAESIEKLDSLSDEEI 180
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEYQA 356
+ ++ D+P+ DLG + ++ GET A ++L F YQ
Sbjct: 181 NTVKNIGLIDLPTAKDLGYGWDIPL---------LLELGETAAKEQLHYFCNSTIYSYQE 231
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
Q DG + K+SP G + R ++ T+I A + + S
Sbjct: 232 QRNFPAIDG----------TSKLSPAFKFGVIGIREVWQ------TTIEA---YENTRSD 272
Query: 417 SSGAGSNWLMFELLWRDFFR 436
+ E+ WR+F++
Sbjct: 273 EARENIQTWQQEIAWREFYQ 292
>gi|374987968|ref|YP_004963463.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis
BCW-1]
gi|297158620|gb|ADI08332.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis
BCW-1]
Length = 466
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 135/317 (42%), Gaps = 41/317 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R S+ F DLRVHDN +L+ A E+ SV+P++ D G + F P RA FL +
Sbjct: 4 RVSVALFTADLRVHDNPALDGALREAESVVPLFVVD---SGIRDADF--VVPNRAVFLAD 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL L+ARG LVVR G +A +GA AV+ S + E ++ A+
Sbjct: 59 CLADLDAALRARGGRLVVRRGDVVQETCRVAARVGAGAVHMAGGASGYAARREARLRVAL 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK---VKGVEIRKTIEALDQLKGL 300
E E++ G+ + G+ + GG + K + + L
Sbjct: 119 ARERRELRVHEGAVTVVAPGVLVPSGKSHSTSGGSQRKDHFAVFTPYYRRWRSEPWRAPL 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSM---KGGETEALQRLKKFAAEYQAQ 357
P+ V +PS+ L +A+++ P A S+ GGET + A
Sbjct: 179 PAPRVVR---VPSIRSAALPTAASLA----PGAASLDLPAGGETA-----ARRRLRRWAA 226
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
P + D + G + + ++SP+L GCLSP + A + D +
Sbjct: 227 GPLADYAERQDDLAG-DATSRLSPYLHFGCLSP-------------VEVARRALD----A 268
Query: 418 SGAGSNWLMFELLWRDF 434
G G+ + +L WRDF
Sbjct: 269 GGPGAEAFVRQLAWRDF 285
>gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|423208514|ref|ZP_17195068.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|404618359|gb|EKB15279.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
Length = 473
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 133/316 (42%), Gaps = 37/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+ DN +L A V ++ P + + K P R F++ V
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIISPTQWRQH-----KMAPIRQRFMLAQVD 57
Query: 187 DLRKNLQARGSDL-VVRV---GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L A G L ++RV + VL L + G +YA++ + DE++ + + AA
Sbjct: 58 ELGRELAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSAA 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++ + +F G + + GEM + F R +++LD+ +
Sbjct: 118 LAEQAVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFS--------RAWLKSLDEEGFVIH 169
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
R G+ L + G GE EAL+RL F QA G
Sbjct: 170 RAPTPRGEPLPWQPLAERAWVDEALGELTVDPRWPVGEAEALRRLNIFLE--QAVLDYGE 227
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA-- 420
+ +I G + +SP+LA G +SPR L++ G S A
Sbjct: 228 TR-DFPAIAGTSV---LSPYLAAGIISPRQCVAVLQQRL-----------GYRPQSKAQP 272
Query: 421 GSNWLMFELLWRDFFR 436
G WL EL+WR+F+R
Sbjct: 273 GFVWLN-ELIWREFYR 287
>gi|347541255|ref|YP_004848681.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
gi|345644434|dbj|BAK78267.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
Length = 469
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 134/317 (42%), Gaps = 48/317 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR DLR+ D+ +L+ A S V+ V+ FD RD D +R F+ S+
Sbjct: 5 ALCWFRRDLRLDDHAALHAALRHSERVICVFVFD-RDILDHLPAQD----HRVDFIWHSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L+++L+A GSDLVV G+P + LA+ GA V+A R+ + + + +
Sbjct: 60 MELKEHLRALGSDLVVASGRPVDCIPALAQEHGASTVWASRDYEPAACQRDAAVAERLSR 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G ++ ++ D++ G+ T + +R I ++A + L
Sbjct: 120 HGTRLETVKDQVIFEQDEVLTVNGKPYTVFTPYRNAWLKKLIPFFLQAYPSTRYLNRLAR 179
Query: 306 VEPGDIPSLLDLGLSQSAAMSQG------GKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
+ +PSL DLG + + G G A + G E Q+ + F A
Sbjct: 180 LAETPLPSLADLGFTDTGLGRLGIRAGMAGAAAVFADFGQRIEHYQQWRDFPAA------ 233
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K ++ S++ L G +S R + A W G +G+
Sbjct: 234 ---KGVSYLSVH-----------LRFGTISIRQL------------AQFAWQQGSAGA-- 265
Query: 420 AGSNWLMFELLWRDFFR 436
+ WL EL+WR+F++
Sbjct: 266 --TTWLN-ELIWREFYQ 279
>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
Length = 525
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 141/331 (42%), Gaps = 50/331 (15%)
Query: 125 ASIVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
S++WFR+ LR+HDN SL+ A + SV P++ FD G G++ R +L+E
Sbjct: 4 GSVLWFRHGLRLHDNPSLHAALEDRSVPFFPIFVFDGETAGTKLVGYN-----RMRYLLE 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ DL + G L++ GKP V L + G + ++ ++ +++A
Sbjct: 59 ALEDLDNQFKKYGGKLIMLKGKPSDVFRRLWEEFGIRKLCFEQDCEPLWRARDDGVKSAC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
++ G+ + + TL+ D + G + P Y F V V G P
Sbjct: 119 REIGVACREYVSHTLWEPDTVIRANGGIPPLTYQMFLHTVTIV-------------GDPP 165
Query: 303 R--GDVEPGDIP--SLLDLGLSQSAAMSQGGKPAANSM------------KGGETEALQR 346
R DV+ I +L D + + KP + GGET AL++
Sbjct: 166 RPVPDVDMSGITFGTLPDCFYQEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETAALKQ 225
Query: 347 LKKFAAEYQAQPPKGNKDGNHDS--IYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 404
+++ A KG+ H S + G S +SP L GCLS RS + ++ +
Sbjct: 226 MQQRLAVEHETFRKGSYLPTHGSPDLLGPPIS--LSPALRFGCLSVRSFYWSVQDLFRQV 283
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ G S ++++ +L+WR++F
Sbjct: 284 ------HQGRLSS----AHFITGQLIWREYF 304
>gi|320589803|gb|EFX02259.1| DNA photolyase [Grosmannia clavigera kw1407]
Length = 893
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 155/384 (40%), Gaps = 78/384 (20%)
Query: 127 IVWFRNDLRVHDNE-----SLNTANNESVSVLPVYCFD----------PRDYGKSSS--- 168
I R DLRV DN S N +LP+Y F PR +S
Sbjct: 24 IYILRRDLRVADNRILHEVSTNPTKYNFTHMLPLYVFAANQIEVSGFIPRSSNTTSPYPE 83
Query: 169 ------GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD-- 220
G+ + GP+RA F+ E ++D++++L++ GS L +RVG V+ + + A+
Sbjct: 84 AKSKIVGYWRCGPHRARFISECLADVKQSLESLGSGLSIRVGMLPEVVERMIAGLTAEGH 143
Query: 221 ---AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD------LPFK---- 267
AV+ E +E E +I ++ GI Y W + + + + +PF
Sbjct: 144 RVSAVWMAEEDGSEEEADENEIGTMCEELGIHY-YLWPNEKHFIAEYVPSIPVPFTISGV 202
Query: 268 -------------LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG------LPSRGDVEP 308
L E+P Y +++K + + R E L + LP+ P
Sbjct: 203 YTDKPSNHAIVPSLDELPDTYTQYQKKCEPLRQRPA-EPLPVPRASTLPTYLPAPTQSLP 261
Query: 309 GDIPSLLDLGLSQSAAMSQGGK----------------PAANSMKGGETEALQRLKKFAA 352
IP D G+ + + P A ++GGETEA +RL+
Sbjct: 262 FVIPDDKD-GIEAALIAPLLRRDCDNRFLYEVKICKKVPWATILEGGETEANKRLRDLFL 320
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
A G + D + G FS ++S +L+ GCL+ R + L + + A +
Sbjct: 321 PENAGLVAGYAE-KKDGLLGRQFSSRLSGYLSQGCLTARLVHQALVQYEDGSNDAMAAAE 379
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
G G GS+ L ELLWRDF R
Sbjct: 380 GFGGGENEGSHALRKELLWRDFMR 403
>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
Length = 638
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 139/329 (42%), Gaps = 54/329 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + ++ VY DP G S+ G + R FL++S+
Sbjct: 5 SVHWFRKGLRLHDNPALLEALNGADTLRCVYFLDPWFAGASNLGVN-----RWRFLLQSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P + L K + + + + I+ +
Sbjct: 60 EDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKKLACE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G+EV TLY LD + G+ P Y F+ V ++E D P RG
Sbjct: 120 AGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLV------SSMEPPDPPLASPDRG 173
Query: 305 DV------------EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF-- 350
+ + +P L +LG ++G PA GGE+EAL+R+++
Sbjct: 174 MMGKCVTPISENHRDKYGVPLLEELGFD-----TEGLAPAV--WPGGESEALKRMERHLG 226
Query: 351 ----AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
A + + PK N S G +SP+L GCLS R + S+S+
Sbjct: 227 PDSTAWQENFERPKMNASPLMASPLG------LSPYLRFGCLSCRLFY------CNSLSS 274
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDFF 435
K + S L ++LWR+FF
Sbjct: 275 TKKVKKNMNPSIS-----LYDKILWREFF 298
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 135/316 (42%), Gaps = 38/316 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WFR DLR+ DN +L+ A S V+P Y + K+ + TGP R FL +
Sbjct: 7 VSLHWFRRDLRLTDNTALHAAQTASTQVIPFYVLS--SWKKAHAW---TGPNRQHFLCGN 61
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L KNL+A GS L++R G+ + + L + GA A+Y +R+ E + A
Sbjct: 62 LESLAKNLEAIGSRLIIRSGETVSEIERLIRETGATALYTNRDPDPYGQTIETHVIALCN 121
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G+ + L+ ++ + N G +R + ++ L + + G
Sbjct: 122 KLGVAFHTCKDAVLHQPQEV------LTGNGGPYRVFTPYSKNWLSLPKAQPLSKVRTLG 175
Query: 305 D-----VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
D ++ +P+++ L + P A GE A R+K F + P
Sbjct: 176 DAPSPKIKSLPLPTVVHWHLPE---------PTATLPTPGEKAARDRMKTFVDSVRL--P 224
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ + N S+ G + ++SP L G +S R ++ ++ G ++
Sbjct: 225 RYEETRNFPSVPG---TSQLSPDLRYGLISIRELYHRCQQALA--------QAGGQPAAQ 273
Query: 420 AGSNWLMFELLWRDFF 435
+G N + EL WR+F+
Sbjct: 274 SGINTYIKELAWREFY 289
>gi|359782589|ref|ZP_09285809.1| deoxyribodipyrimidine photolyase [Pseudomonas psychrotolerans L19]
gi|359369409|gb|EHK69980.1| deoxyribodipyrimidine photolyase [Pseudomonas psychrotolerans L19]
Length = 473
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 149/327 (45%), Gaps = 56/327 (17%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+ +VWFR DLR D+ +L+ A E V+ V+ P + + K F + +
Sbjct: 2 SQLVWFRTDLRTLDHPALHAAT-EQGPVVAVFLLSPAQWQEHDEAAVKV-----DFWLRN 55
Query: 185 VSDLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+++L K L + G L+VR + VL+ELA+ +G + ++ + E +E ++ +
Sbjct: 56 LAELGKTLGSLGIPLLVRSAERWEQAPQVLLELARELGVEHLHFNDEYGVNEAARDDAVA 115
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA-----LD 295
A + G+ +T +LD F G + T GG+ KV G + RKT A L
Sbjct: 116 EAFEAAGL-------TTHRYLDQTLFAPGTVLTKSGGYF-KVFG-QFRKTCLARLETSLP 166
Query: 296 QLKGLPSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
L P++ V+ D+P+ + G + A + PA GE ALQRL+ F
Sbjct: 167 TLLPAPNKQKKNLVQADDLPTSV-AGFAAIPAEVKQLWPA------GEEAALQRLQAFIH 219
Query: 353 EYQAQPPKGNKDGNHDS--IYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
+ + + H + I + ++S +L G L+PR + AA +
Sbjct: 220 D--------DLEDYHQARDIPSEPGTSQLSAYLNAGVLTPRQ----------CLQAAVRA 261
Query: 411 NDG-ESGSSGAGSNWLMFELLWRDFFR 436
NDG SG S + W+ ELLWR+F+R
Sbjct: 262 NDGLLSGGSQGAATWIT-ELLWREFYR 287
>gi|343403537|dbj|BAK61591.1| cryptochrome2a [Glycine soja]
gi|343403539|dbj|BAK61592.1| cryptochrome2a [Glycine soja]
gi|343403541|dbj|BAK61593.1| cryptochrome2a [Glycine soja]
gi|343403543|dbj|BAK61594.1| cryptochrome2a [Glycine soja]
gi|343403545|dbj|BAK61595.1| cryptochrome2a [Glycine soja]
gi|343403547|dbj|BAK61596.1| cryptochrome2a [Glycine soja]
gi|343403549|dbj|BAK61597.1| cryptochrome2a [Glycine soja]
Length = 631
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 131/277 (47%), Gaps = 32/277 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALTAAAKEG-SVLPVYVWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG-----GETEALQRLKKFAAEYQAQ 357
G +E SL +LGL ++ KP +N++ G G A + L++F +
Sbjct: 177 EGKIEEC---SLEELGLE-----NESEKP-SNALLGRAWSPGWRNADKALREFVELHLLH 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K G + +SP+L G LS R +F
Sbjct: 228 YSKKRLK------VGGESTSLLSPYLHFGELSARKVF 258
>gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
Length = 478
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 138/320 (43%), Gaps = 46/320 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR+DLRV DN +L+ A N ++ +Y P + + P + F + ++
Sbjct: 4 LMWFRSDLRVQDNTALSQAMNRGATI-ALYLITPDQWQRHDD-----APCKVDFWLRNLR 57
Query: 187 DLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K L L+VR G + ++ + AV+ + E +E + ++ A
Sbjct: 58 ELSKALAELNVPLLVRQCHDWGDVPVQVADVCQEHTICAVHVNEEYGINESLRDRRVSAY 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ + I W S HLD + FK G + T GG+ + + + V + AL L
Sbjct: 118 LSQQAIA----WHS---HLDQILFKPGSVLTRSGGYFQVYSQFRKVCYERLHSALPALVT 170
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
P DV+ IP + G + + + PA GE ALQRL++FA E Q
Sbjct: 171 QPKAQTPMDVKSDIIPDSVK-GFATPSESLRLLWPA------GEQAALQRLERFADE-QV 222
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
K +D + ++S +LA G LSPR + AA N GE
Sbjct: 223 AFYKDERD-----FPAKPGTSQLSAYLAAGILSPRQ----------CLHAALSANRGEFD 267
Query: 417 SSGAGSNWLMFELLWRDFFR 436
S G + ELLWR+F++
Sbjct: 268 SGNQGVITWINELLWREFYK 287
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 128/298 (42%), Gaps = 51/298 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFR DLR+ DN++L A+ ++P+Y +P +++G G +A +L S+
Sbjct: 10 ILWFRKDLRLDDNQALTAAHRSGRPIIPLYIGEP-----AAAGTGPLGAAQAWWLHHSLE 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++LQ R LV+ G+ VL K GA+AV+ +R + + +I+ ++ +
Sbjct: 65 ALNRSLQKRHGRLVLASGEALEVLRAFIKESGAEAVFWNRRYDPAGISIDARIKHELEKQ 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-----------VEIR-----KT 290
IE + F G L+ L G Y F ++G E+R T
Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGDEPEPPLEAPAELRLTSQLPT 184
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF 350
E L+ K LP++ D GD L GE A QRL F
Sbjct: 185 SETLESWKLLPTKPDWA-GDFVDL---------------------WTPGEEGAQQRLHAF 222
Query: 351 AAEYQAQPPKGNKDGNHDSIYGAN-FSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
E + K N+D Y A + +SP LA+G +SP ++D + + + AA
Sbjct: 223 -VEDALEGYKENRD------YPARPATSMLSPHLALGEISPARIWDATRGLSQRVPAA 273
>gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
Length = 481
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 144/326 (44%), Gaps = 58/326 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A +V VY P + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAAQRGAAVA-VYLLSPEQWLAHDD-----APCKIDFWLRNLQ 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L L L++R + VL+EL + + ++ ++E E + + + A
Sbjct: 57 SLSTALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHESRRDAAVTRA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQ 296
++ GI V+ HLD L F+ G + T GG+ + KV + + AL +
Sbjct: 117 LQHAGISVQ-------GHLDQLLFQPGSVLTKSGGYFQVFSQFRKVCYSRLHTALPALVK 169
Query: 297 LKG--LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE- 353
G LP + +P +P ++ S + A+ + G+ EA +RL+KF+ E
Sbjct: 170 APGAQLPLSINADP--LPQRVEGFPSPTQALRE-------LWPAGDDEAQRRLEKFSDEQ 220
Query: 354 ---YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
YQ++ K G + ++SP+LA G +SPR + AA +
Sbjct: 221 IHYYQSERDFPAKPG----------TSQLSPYLAAGVISPRQ----------CLHAALRG 260
Query: 411 NDGESGSSGAGSNWLMFELLWRDFFR 436
N GE S G+ + ELLWR+F++
Sbjct: 261 NQGEFESGSPGAVTWINELLWREFYK 286
>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
Length = 522
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 127/307 (41%), Gaps = 48/307 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR HDN SL A S V PV+ D D+ K ++G + F+IE +
Sbjct: 9 TIHWFRKGLRFHDNPSLLHALRTSHHVYPVFVMDL-DFMKDFK--IRSGANQWRFVIECL 65
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL L+A G L V G E E + + E H + + D
Sbjct: 66 QDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAAVRKIAVD 125
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV----EIRKTIEA------- 293
EG+EV + TLY++D + + G P Y F++ +K + +T A
Sbjct: 126 EGVEVVNYVAHTLYNIDKIIEYNGGSAPLTYRQFQKVLKDFGAPPQASETATAEHFASCS 185
Query: 294 --LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
L+ L+ E ++ +L +LG+ + P+ GGETE L+R++K
Sbjct: 186 VPLEALRD-------ERYNMVTLEELGM-------RCEHPS--KFVGGETEGLRRVEKHL 229
Query: 352 AEY----QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI--- 404
Q + PK S G +SP+ + GCLS R + L K +
Sbjct: 230 QNQGWVTQFEKPKTAPTSLLPSTTG------LSPYFSFGCLSVRHFYHRLDKIYAKLRSH 283
Query: 405 --SAASK 409
SA+SK
Sbjct: 284 QTSASSK 290
>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
Length = 418
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 125/292 (42%), Gaps = 46/292 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I FR LR+HDN SL A S ++ PVY D R + + G G R FL++S+
Sbjct: 5 TIHLFRKGLRLHDNPSLLGALASSSALYPVYVLD-RVFLQ---GAMHMGALRWRFLLQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL LQA GS L V G +L EL G + EV + ++ I+ ++
Sbjct: 61 EDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQE 120
Query: 246 EGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV---EIRKTIEALDQLKGLP 301
G++ TLY + + G P Y F + + E +++ +
Sbjct: 121 NGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCV 180
Query: 302 SRGDVE-PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
+ DV+ +PSL LGL A + GGE+ ALQRL+K +Q+Q
Sbjct: 181 TPVDVDRVYAVPSLAHLGLQVEAEV---------LWPGGESHALQRLEK---HFQSQG-- 226
Query: 361 GNKDGNHDSIYGANFS-------------CKISPWLAMGCLSPRSMFDELKK 399
+ ANFS +SP+L++GCLS R+ + + +
Sbjct: 227 ----------WVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHKYTR 268
>gi|432862559|ref|XP_004069915.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 562
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 134/323 (41%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + S ++ +Y DP G S+ G + R FL+ +
Sbjct: 5 TVHWFRKGLRLHDNPALRDSIRGSDTLRCIYILDPWFAGSSNVGIN-----RWRFLLHCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEYDSEPFGKERDAAIQKLASE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
+EV TLY LD + G P Y F+ ++ VE+ R T+E +
Sbjct: 120 AAVEVVVRISHTLYDLDRIIELNGGPPPLTYKRFQALINRMDAVELPAERITLETMQSCV 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S + + SL +LG G P A GGETEAL RL K + A
Sbjct: 180 TPVSENHDDKFGVLSLEELGFETE------GLPTA-VWPGGETEALLRLERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
Y+ P+ N + + G +SP+L GCLS R + +L T + K N
Sbjct: 233 NYER--PRMNANSLLATPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKVKKNS 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|351734424|ref|NP_001235220.1| cryptochrome 2 [Glycine max]
gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max]
Length = 634
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 131/277 (47%), Gaps = 32/277 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALTAAAKEG-SVLPVYVWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG-----GETEALQRLKKFAAEYQAQ 357
G +E SL +LGL ++ KP +N++ G G A + L++F +
Sbjct: 177 EGKIEEC---SLEELGLE-----NESEKP-SNALLGRAWSPGWRNADKALREFVELHLLH 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K G + +SP+L G LS R +F
Sbjct: 228 YSKKRLK------VGGESTSLLSPYLHFGELSARKVF 258
>gi|449271617|gb|EMC81901.1| Cryptochrome-1 [Columba livia]
Length = 525
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 130/329 (39%), Gaps = 58/329 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I FR LR+HDN +L A S ++ PVY D R + G R FL++S+
Sbjct: 5 TIHLFRKGLRLHDNPTLLAALESSETIYPVYVLDRRFLASAM----HIGALRWHFLLQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL KNL G+ L+V G+ E+VL + + V E+ + E I +
Sbjct: 61 EDLHKNLSRLGARLLVIQGEYESVLRDHVQKWNITQVTLDAEMEPFYKEMEANIRRLGAE 120
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKG-----VEIRKTIEALDQLKG 299
G EV G +LY L G P Y F + V +R Q
Sbjct: 121 LGFEVLSRVGHSLYDTKRILDLNGGSPPLTYKRFLHILSQLGDPEVPVRNLTAEDFQRCM 180
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P G E +P DL + + + GGETE L+RL++
Sbjct: 181 SPEPGLAERYRVPVPADLEIPPQ---------SLSPWTGGETEGLRRLEQHLT------- 224
Query: 360 KGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELKKTATSISA 406
D + ANF + +SP+ +MGCLS R+ F L ++I A
Sbjct: 225 --------DQGWVANFTKPRTIPNSLLPSTTGLSPYFSMGCLSVRTFFQRL----SNIYA 272
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+K + S L +LLWR+FF
Sbjct: 273 QAKHHSLPPVS-------LQGQLLWREFF 294
>gi|428208935|ref|YP_007093288.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
gi|428010856|gb|AFY89419.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
Length = 477
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 141/322 (43%), Gaps = 47/322 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP + D P R +++I +
Sbjct: 6 LFWHRRDLRISDNTGLAAARQRTQKVVGVFCLDPNILER-----DDVAPVRVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS-HDEVKSEEKIEAAMKD 245
L++ GS L++ G+P + LA A+ A AV+ + +V + +V+ IE +K+
Sbjct: 61 QLQQRYAQVGSQLLILQGEPREAIPALATALSAKAVFWNWDVEPYSQVRDRTVIE-TLKE 119
Query: 246 EGIEV-KYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+GI+V + W L+ DD+ + T + F +AL ++GL S
Sbjct: 120 KGIQVLEENWDQILHSPDDIFTGSNQPYTVFTPFWRNWSSKPKAAPAQALQDVEGL-SEQ 178
Query: 305 DVEPGD------IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEY 354
+++ + +P+ DLG + + ++ GET A +RL++F EY
Sbjct: 179 ELQTAEKVGAIALPTAKDLGFNWENGL---------VIEPGETPARERLEQFCHRAIEEY 229
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ Q DG + ++S L G + R ++ A ++ A E
Sbjct: 230 KEQRNFPAYDG----------TSQLSAALKFGAIGIRRVW------AATVEAMENTRSDE 273
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
+ +S W EL WR+F++
Sbjct: 274 AQTSIRA--WQQ-ELAWREFYQ 292
>gi|411117034|ref|ZP_11389521.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713137|gb|EKQ70638.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 547
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR DLR+ D+ + A +V+PV+ FD ++ +T P R FL++++
Sbjct: 4 TIVWFRRDLRIADHAPIYRAALRG-AVIPVFVFD-----RALLHHPETAPARVEFLLQAL 57
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH--REVSHDEVKSEEKIEAAM 243
L + L+ RG L++R G P TVL L + AD +YAH E + V+ + ++ A+
Sbjct: 58 MSLDQELRDRGGRLIIRSGDPVTVLPNLIRETEADGIYAHIDFERIYGRVR-DARLNQAL 116
Query: 244 KDEGIEVKYF 253
++G+++++F
Sbjct: 117 AEQGLKIRWF 126
>gi|417321887|ref|ZP_12108421.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
gi|328470041|gb|EGF40952.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
Length = 338
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 257 TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLD 316
+L+ LPF L ++P + F + V+G++I I+A +L +P + +P+L
Sbjct: 29 SLFDESKLPFTLPDLPETFTQFGKCVEGIDIAHPIDAPSRLPPMP-----KDAQLPTLSS 83
Query: 317 LGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFS 376
+SA S GGE L +++ + A K ++G + G +S
Sbjct: 84 SCFDESALFS-----------GGEWSGLAHCRRYFSSGLASSYKETRNG----LDGMAYS 128
Query: 377 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
K SPWLA+GC+SPR ++ LK+ + A ND +NW+ FELLWR++F
Sbjct: 129 TKFSPWLALGCVSPRMIYAMLKQYEQTQGA----ND--------STNWIYFELLWREYF 175
>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
Length = 538
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 133/321 (41%), Gaps = 37/321 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL N + + ++ DP S+ G +K FL++
Sbjct: 4 KHTVHWFRKGLRLHDNPSLRHGLNGAKTFRCIFILDPWFANASNVGINK-----WRFLLQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL ++L S L V G+P +L +L K G + + ++ I A
Sbjct: 59 CLEDLDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLTFEEDPEPFGRVRDQNIMAMC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVE--------IRKTIEAL 294
+ I V TLY L+ + + G P Y F+ V +E + T+
Sbjct: 119 RGMNITVISLVAHTLYKLECIIERNGGRAPLTYHQFQSVVASMESPPLPVPPVTSTVVG- 177
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
D + + D + G +P+L +LG ++G P +GGE+EAL RL++
Sbjct: 178 DAVSPISDDHDEKYG-VPTLEELGFD-----TEGLLPGV--WQGGESEALSRLERHLERK 229
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
G S+ + +SP+L GCLS R + +L I A
Sbjct: 230 AWVASFGKPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLNDLYRKIKKAV------ 281
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
S G ++LWR+FF
Sbjct: 282 PPLSLHG------QVLWREFF 296
>gi|398992808|ref|ZP_10695769.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM21]
gi|398136264|gb|EJM25356.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM21]
Length = 487
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 143/319 (44%), Gaps = 44/319 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR++DN +L+ +V VY P + + P + F + ++S
Sbjct: 10 LIWLRSDLRLNDNTALSAGAARGQAV-AVYLLSPEQWLEHDDA-----PCKVDFWLRNLS 63
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R + TVL++L + + DAV+ + E E + + + A
Sbjct: 64 ELSRALGELNIPLLIRKASRWDEAPTVLLDLCQQLKIDAVHVNEEYGIHESRRDAAVAQA 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-EALDQLKGLP 301
+K GI+ +LD L FK G + T G + + + RK E L + P
Sbjct: 124 LKANGIDF-------CSYLDQLLFKPGTVLTRTGTYFQVFS--QFRKVCYERLH--RSTP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK----GGETEALQRLKKFAAEYQAQ 357
R PG + + L + + +G ++S++ GETEA +RL F A+ Q
Sbjct: 173 ERV-CAPG-VQAPLAISSDTLPSSVEGFATPSDSLRKLWPAGETEARRRLDTF-ADAQID 229
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K +D + ++S +LA G +SPR + AA + N GE S
Sbjct: 230 YYKDERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQGEFES 274
Query: 418 SGAGSNWLMFELLWRDFFR 436
G+ + ELLWR+F++
Sbjct: 275 GNVGAVTWINELLWREFYK 293
>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
Length = 480
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 17/241 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR++DN L A + V+ ++CFDP S R ++L+ +
Sbjct: 5 LFWHRRDLRLNDNLGLAAAYTRTPKVVGLFCFDPAILSASD-----IAAVRVAYLVGCLQ 59
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ + G ++ G P +L ++AK +GA AV+ H +V + + + AA+K++
Sbjct: 60 ALQEAYRRLGGSFLIFRGDPRQILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAALKEK 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQLKGL 300
GI V+ W L+ + + K G+ T Y F K + V + +E L +++
Sbjct: 120 GIAVETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLAKPEPVSAPRHLEPLTEIEQ- 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQG-GKPAANSMKGGETEALQRLKKFAAE--YQAQ 357
+ G + +P+ DLG S + G+ AA + ET Q ++ + + Y AQ
Sbjct: 179 ATAGTLGAICLPTAKDLGFHWSGDLILAPGEAAAQAQL--ETFIDQHIQDYGEQRNYPAQ 236
Query: 358 P 358
P
Sbjct: 237 P 237
>gi|356576533|ref|XP_003556385.1| PREDICTED: cryptochrome-2-like [Glycine max]
Length = 634
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 32/277 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG-----GETEALQRLKKFAAEYQAQ 357
G VE + P L +LGL ++ KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLE-----NESEKP-SNALLGRAWSPGWRNADKALTEFVEQHLLD 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K DS + +SP+L G LS R +F
Sbjct: 228 YSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
Length = 469
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 138/316 (43%), Gaps = 48/316 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ W R DLR+ D+ +L++A +S V+ V+ FD R S D+ R F+ S+
Sbjct: 6 SLCWLRRDLRLDDHAALSSALQQSREVVCVFVFD-RAILDSLPASDR----RVDFIHRSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L+ LQ GS LV R G + L LA +GA V+A ++ V + ++ ++
Sbjct: 61 CELQARLQQHGSTLVCRYGWADEALPALAAELGAQVVFAAQDDEPASVTRDARVAGQLEQ 120
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYG----GFREKVKGVEIRKTIEA--LDQLKG 299
G + TL D+L + G T + + ++ ++ + A LD+L
Sbjct: 121 AGCILHLVKDHTLRARDELLTRTGTPFTVFTPYARAWLARLAPADMAEWPVAPYLDRLCP 180
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LP++ +PSL +G + + + G + + + + L RL + E
Sbjct: 181 LPAQ------PLPSLASMGFTDTGLAALGWQAGSTGAQAALAQFLPRLPLYHEE------ 228
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ + ++SP L G LS R +L + AT ++G G
Sbjct: 229 --------RDFPALDATSRLSPHLRFGTLSVR----QLVRLAT-----------DAGHEG 265
Query: 420 AGSNWLMFELLWRDFF 435
A + WL EL+WRDF+
Sbjct: 266 AQA-WLN-ELVWRDFY 279
>gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
Length = 475
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 131/308 (42%), Gaps = 35/308 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVW R DLR+ D+ +L+ A V+PV+ D G D G L + +
Sbjct: 10 IVWIRRDLRLTDHAALHEAGRSGRPVIPVFIRD--------HGVDSLGAAPKWRLGQGLG 61
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
K L +GS LV+R G VL L A AV+ R ++ + ++AA+KD
Sbjct: 62 HFAKLLGDKGSRLVLRAGPAREVLEALIDETAAGAVWWQRAYDPAAIERDTAVKAALKDR 121
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G +V+ F G L+ + K G Y F V ++ + + A +L S +
Sbjct: 122 GTDVRSFAGHLLFEPWTVETKQGGYYKVYSPFWRAVCERDVPEPLAAPSKLTPPESWPEG 181
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
E +L D L AAM +GG ++ GE A RL F A G KDG
Sbjct: 182 E-----ALDDWQL--GAAMRRGGPVVEAHVRLGEETAQARLGAF----MANGVDGYKDGR 230
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
++ + +S L++G +SP A AA + D +G +GA W
Sbjct: 231 --NLVAEDGCSGLSENLSLGEISP----------AQCWHAAMRARD--AGKAGA-ETWAK 275
Query: 427 FELLWRDF 434
EL+WR+F
Sbjct: 276 -ELVWREF 282
>gi|400288682|ref|ZP_10790714.1| deoxyribodipyrimidine photolyase [Psychrobacter sp. PAMC 21119]
Length = 460
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 146/339 (43%), Gaps = 49/339 (14%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVS--VLPVYC------FDPRDYGKSSSG 169
N + ++V F NDLRV DN +L A+ S +L VY D +D+ +
Sbjct: 7 NNSENNNVTLVLFHNDLRVADNATLLKASEISTKGKLLLVYASSLTDILDSKDH-YDAYR 65
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPE--TVLVELAKAIGADAVYAHRE 227
+D G R FL ES++DL +L RG+ L+ E V +L+ I V
Sbjct: 66 YDSIGQARQQFLHESLADLNASLIQRGNRLLYLQKGNEALNVFTQLSNLIAQQQV-TDIC 124
Query: 228 VSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV----- 282
+S ++ K+ ++ + E+ + +T D+LP L ++P ++ FR+++
Sbjct: 125 ISQTADYNQNKVYDLLQAKYPEIHWHIDTTATLFDELP--LEQLPKSFTQFRKQIESDYD 182
Query: 283 -----KGVEIRKTIEALDQL-KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSM 336
K + I T E+L L + + SR + + LS A + + + S
Sbjct: 183 LLHAEKDIAIYPTPESLAPLPESMQSRDEY-------FFESQLSNQAGRDEPSQQPS-SF 234
Query: 337 KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 396
+GGE L+ L + K ++ D + S K S WLA G LS ++ +
Sbjct: 235 RGGELNGLKHLDAYFCSDAPSTYKTTRNALDDWTH----STKFSAWLANGSLSVNTVLNR 290
Query: 397 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
L++ I A ND G + FELLWR++F
Sbjct: 291 LRRYERDIIA----NDSTYG--------IWFELLWREYF 317
>gi|399543313|ref|YP_006556621.1| Cryptochrome DASH [Marinobacter sp. BSs20148]
gi|399158645|gb|AFP29208.1| Cryptochrome DASH [Marinobacter sp. BSs20148]
Length = 393
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 117/262 (44%), Gaps = 26/262 (9%)
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G +R FL +S+ L ++L+A G L + G PETV+ LA + R+ E
Sbjct: 2 GHHRWRFLWQSLIGLERSLRAMGQRLHIAWGDPETVIPALALGHAISRIVRSRQPGTREA 61
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ + I + L+ LP L ++P + FR+ ++ +K
Sbjct: 62 VQWQTLQDKLPK--IAFTQYETLGLFTESLLPMPLQDLPATFSQFRKLIE----KKGDRG 115
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE 353
+L+ +P+ + P P L D + A+ + +P+A S GGE L RL+ F A
Sbjct: 116 PARLR-IPTVKMLPPA--PGLPDDNRGECPAIQEPTQPSAFS--GGEQAGLARLRDFLAG 170
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
A +++ N S K SPWLA GCLS R + D SIS
Sbjct: 171 THA---IDTYKETRNALDDWNSSSKFSPWLAHGCLSAREIAD-------SISLYE----- 215
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
+ +S + WL FE+LWR++F
Sbjct: 216 QQHTSNESTYWLWFEVLWREYF 237
>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max]
Length = 634
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 32/277 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG-----GETEALQRLKKFAAEYQAQ 357
G VE + P L +LGL ++ KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLE-----NESEKP-SNALLGRAWSPGWRNADKALTEFVEQHLLD 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K DS + +SP+L G LS R +F
Sbjct: 228 YSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 467
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 129/310 (41%), Gaps = 29/310 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L + + V+ V+ DP + + P R FL+ES+
Sbjct: 5 LFWHRRDLRLADNLGLAAVSAITPEVMGVFVLDPAELEHPT-----MAPARRWFLLESLR 59
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ + GS L++ G P +L LA+ +GA V +R+V + + ++ AA+K
Sbjct: 60 ELQQRWRQAGSQLLLLEGNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAALKAI 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ V W L + L G+ YG + + K + A +LK L
Sbjct: 120 GVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEKQPKAKPVPAPSELKALLK---- 175
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
P L L + + + GET AL++L+ FAA +G
Sbjct: 176 -----PDLSGLPVLNEVPVEPWEGADLCPCRPGETAALEQLEHFAARAMEHYCEGR---- 226
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
++ G + +S L G LSPR+ + A S+ W+ S
Sbjct: 227 --NLPGDEGTSTLSAALRAGSLSPRTAW------AASLDV---WSHCRSDEQRQSVTVWQ 275
Query: 427 FELLWRDFFR 436
EL WR+F++
Sbjct: 276 QELAWREFYQ 285
>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
Length = 359
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 131/312 (41%), Gaps = 40/312 (12%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
LR+HDN L A S ++ PVY D R + SS G R +FL++S+ DL KNL
Sbjct: 3 LRLHDNPVLLAALESSEALYPVYILD-RAFLTSSM---HIGALRWNFLLQSLEDLHKNLG 58
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
GS L+V G+ E VL + + V E+ + E I+ + G EV
Sbjct: 59 QLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGVELGFEVFSL 118
Query: 254 WGSTLYHLDD-LPFKLGEMPTNYGGFREKVK-----GVEIRKTIEALDQLKGLPSRGDVE 307
+LY+ L G P Y F + V +R Q P G E
Sbjct: 119 VSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPEVPVRNVTAEDFQRCRAPDPGLAE 178
Query: 308 PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY----QAQPPKGNK 363
+P +DL +S + + +GGETE LQRL++ + P+
Sbjct: 179 CYRVPLPVDLKISPE---------SLSPWRGGETEGLQRLERHLTDQGWVTSFTKPRTVP 229
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
+ S G +SP+ +MGCLS R+ F L ++I A +K + S
Sbjct: 230 NSLLPSTTG------LSPYFSMGCLSVRTFFYRL----SNIYAQAKHHSLPPVS------ 273
Query: 424 WLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 274 -LQGQLLWREFF 284
>gi|348680515|gb|EGZ20331.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 708
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 144/367 (39%), Gaps = 72/367 (19%)
Query: 114 LDPNNGAAIRRASIVWFRNDLRVHDNESLNT----------ANNESVSVLPVYCFDPRDY 163
+D N A RR +IVWF+ DLR+HDN +L+ A +++LPVY
Sbjct: 107 VDDLNAALPRRRAIVWFKRDLRMHDNLALDAAVRAQQLLQRAGGGDMALLPVYIL----- 161
Query: 164 GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVY 223
+ G R FL+E+V DL K+++ L+V G + VL + A G ++
Sbjct: 162 --HRPKHQRCGAVRFQFLLEAVEDLAKSIKNLQGRLLVLRGDADEVLRAVMTAWGITDLF 219
Query: 224 AHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL--GEMPTNYGGFREK 281
V V + ++ A + ++V G TLY ++ +L G+ PT+Y E
Sbjct: 220 FEAGVMLYSVARDNRVRAVAETLDVKVTSIRGVTLYDPHEI-IRLNGGQPPTDYERLLEI 278
Query: 282 VKGVEIRKTIEAL------------DQL--------KGLPSRGDV-------------EP 308
+ DQL + PS +V EP
Sbjct: 279 TDNMPQPAQPIPAPVKLSNAAAFTPDQLFSWLKHFYRQDPSAANVIAGVEAEKEGATPEP 338
Query: 309 GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHD 368
+P L LGL+ + + + GGE+EA++RL F E + + K
Sbjct: 339 FVVPPLTALGLTPPSPHA--------AFYGGESEAMKRLDAFCQE-ERRVGLFEKPKTSP 389
Query: 369 SIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 428
+ + +S +L GCLS R F + I G + + G +
Sbjct: 390 VAFDPPSTTTLSAYLTFGCLSAREFFYRI----MFIQLKFPLRPGPTQVTLEG------Q 439
Query: 429 LLWRDFF 435
L+WR+FF
Sbjct: 440 LMWREFF 446
>gi|422604194|ref|ZP_16676211.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
str. 301020]
gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
str. 301020]
Length = 482
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 139/321 (43%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQLKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKAGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P ++ IP Q + K + GE EA +R+ F A+ Q
Sbjct: 169 RTPKAQQSLSIKSDSIP-------DQVEGFATPSKALRDLWPAGEAEARRRMATF-ADAQ 220
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K +D + ++S +LA G +SPR + AA N GE
Sbjct: 221 ISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQGEF 265
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ G+ + ELLWR+F++
Sbjct: 266 ETGDVGTVTWINELLWREFYK 286
>gi|398889396|ref|ZP_10643239.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM55]
gi|398189518|gb|EJM76792.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM55]
Length = 485
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 54/324 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A V VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAATRGPCV-AVYLLSPEQWLEHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L+VR VL++L + DAVY + E E + + +
Sbjct: 57 ELSRELGQLNIPLLVRWAPRWEDAPAVLLDLCRQWQIDAVYLNEEYGIHETRRDAAVART 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ EGI+V + LD L FK G + T G + + + V + +L L
Sbjct: 117 LGAEGIKVHRY-------LDQLLFKPGSVLTRTGTCFQVFSQFRKVCYERLHHSLPGLVR 169
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----A 352
P + ++ +P+ ++ G + A + PA GETEA +RL F
Sbjct: 170 APRKQAPLNIASDAVPTSIE-GFATPADNLRQLWPA------GETEARRRLNSFTDAQID 222
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
YQ + K G + ++S +LA G +SPR + AA N
Sbjct: 223 HYQNERDFPAKPG----------TSQLSAYLAAGVISPRQ----------CLHAALNNNQ 262
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
GE S G+ + ELLWR+F++
Sbjct: 263 GEFESGKTGAVTWINELLWREFYK 286
>gi|423097276|ref|ZP_17085072.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q2-87]
gi|397885561|gb|EJL02044.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q2-87]
Length = 483
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 139/332 (41%), Gaps = 70/332 (21%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+ DN +L A + V VY P + P + F + +++
Sbjct: 3 LIWLRSDLRLRDNTALAAAAAQGPCV-AVYLISPEQWRAHDDA-----PCKIDFWLRNLA 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L LQ L++R + VL+ L + + AV+ + E H+E + + ++ A
Sbjct: 57 SLNVALQELNIALLIREAPHWRQAPQVLLTLCRELNISAVHVNEEYGHNESRRDAEVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +G+ + LD L FK G + T G + + + + V + +L L
Sbjct: 117 LKSQGVGFHSY-------LDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHYSLPSLVA 169
Query: 300 LPSR-------GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK----GGETEALQRLK 348
P R D PG I +G P + +++ GETEA +RL
Sbjct: 170 TPKRQAPTGLVSDPVPGQI---------------KGFAPPSQALRDLWPAGETEARRRLD 214
Query: 349 KFAAE----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 404
F + YQ++ + G + ++S +LA G +SPR +
Sbjct: 215 TFVDQHIDAYQSERDFPARPG----------TSQLSAYLAAGVVSPRQ----------CL 254
Query: 405 SAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
AA + N GE S G+ + ELLWR+F++
Sbjct: 255 HAALQANQGEFESGCVGTVTWVNELLWREFYK 286
>gi|303276695|ref|XP_003057641.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460298|gb|EEH57592.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 781
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 125 ASIVWFR-NDLRVHDNESL-NTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
A IVWFR DLRVHD+ L A + +V+P++ FDP + + P A L
Sbjct: 373 AHIVWFRAGDLRVHDHPGLAEAAAMTTRAVIPLFVFDPSEIAHGT-------PSDARALH 425
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E+V LR +L+A GSDLVVRVG P + +A A+GA ++ A RE+ V + AA
Sbjct: 426 EAVVALRASLRALGSDLVVRVGDPSMEMPSVAAALGATSLAAARELEWARVAGWRETLAA 485
Query: 243 MKDEGIEV 250
++ G++
Sbjct: 486 LRAAGVKC 493
>gi|320539319|ref|ZP_08038988.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
symbiotica str. Tucson]
gi|320030444|gb|EFW12454.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
symbiotica str. Tucson]
Length = 475
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 47/319 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A NE VL V+ P+ + + P +A+ + S+
Sbjct: 5 LVWLRNDLRITDNKALHAACNEPDARVLAVFIATPQQWRRHD-----IAPRQAALIHASL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L++ L+ +G L L + ++ +R+ +E + ++++E
Sbjct: 60 KQLQQALEQKGIPLYCHQCDDFAASIDWLTDYCAKQQVTVLFYNRQYELNEWRRDQQVEQ 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + ++F S L + GEM Y FR IR+ E+ ++ LP
Sbjct: 120 RLAGR-VRCQHFDDSLLLPPGSVQTGSGEMYKVYTPFRNAF----IRRLTES--DVRCLP 172
Query: 302 S----RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
+ G + D P A GE ALQRL+ F + Q Q
Sbjct: 173 APQPRAGALPIPDAPP----------AFEYSHADPGEDFPAGEQAALQRLRAFCRQ-QVQ 221
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
+D +I G + +SP+LA+G LSPR F+ L S+ + ESG+
Sbjct: 222 DYLTQRDL--PAIAGTS---SLSPYLAIGTLSPRQCFNRLCAEHPSVL-----EERESGA 271
Query: 418 SGAGSNWLMFELLWRDFFR 436
G WL EL+WR+F+R
Sbjct: 272 FG----WLN-ELIWREFYR 285
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 49/322 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP + SG D P R ++++ +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----EILSG-DDIAPVRVAYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA AVY +++V + + +E ++ +
Sbjct: 61 CLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLK--G 299
GI+V+ FW L H + F + P KV RK I E +LK G
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCQRLKSTG 172
Query: 300 LP---SRGDVEPGDI--PSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEY 354
L + +E G I P+ DLG S ++ GET A RL+ F
Sbjct: 173 LTEAQEKAALEAGAIALPTAKDLGFIWSEPF---------ILEPGETAASDRLEIFCDRA 223
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ +G N +I G + +SP L G + R+++ + ++ I A ++ ++
Sbjct: 224 IYEYDEGR---NFPAIDGTSV---LSPALRFGAIGIRTLWQKTQE----IIALTRSDEAR 273
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 274 HHI----QTWQQ-ELAWREFYQ 290
>gi|422016104|ref|ZP_16362694.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
gi|414095551|gb|EKT57213.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
Length = 481
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 138/317 (43%), Gaps = 42/317 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+VWFRNDLRV DN++L++A ++ VL ++ P + P + +FL +
Sbjct: 7 CHLVWFRNDLRVMDNKALSSACSDPQAKVLALFTATPEQWRAHD-----VSPRQITFLHQ 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETV-----LVELAKAIGADAVYAHREVSHDEVKSEEK 238
++ +LR +L G L+ + P+ + +++ A+ ADA++ + + +E +E
Sbjct: 62 NLIELRDSLAKLGIPLICQT-TPDFLSAAQWVLDFAEQQQADALFFNHQYELNERNRDEW 120
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + V F + L + + GEM Y FR + + T+ +
Sbjct: 121 L--IKQQPSFRVHAFDDALLLPPKSVSNQKGEMYQVYTPFR---RAFVTQLTVTDFRSVP 175
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
SRG + + LL A GE ALQRL+ F E +AQ
Sbjct: 176 APKSRGAILSIEKQQLL---------FEHDAVEIAAHFPSGEVAALQRLRLFCRE-RAQD 225
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+ N+D I + + ++SP+LA+G LSPR + L N S
Sbjct: 226 YQQNRD-----IPSLDGTSQLSPYLAVGVLSPRQCLNRLLTE----------NPHTFDSP 270
Query: 419 GAGSNWLMFELLWRDFF 435
+GS + EL+WR+F+
Sbjct: 271 DSGSFTWLNELIWREFY 287
>gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 482
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 139/321 (43%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQLKIEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P ++ IP Q + K + GE EA +R+ F A+ Q
Sbjct: 169 RTPKAQQSLSIKSDSIP-------DQVEGFATPSKALRDLWPAGEAEARRRMATF-ADAQ 220
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K +D + ++S +LA G +SPR + AA N GE
Sbjct: 221 ISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQGEF 265
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ G+ + ELLWR+F++
Sbjct: 266 ETGDVGTVTWINELLWREFYK 286
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris]
Length = 574
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 133/323 (41%), Gaps = 41/323 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLTGATTFRCVFVLDPWFAGSTNVGINK-----WRFLLQ 75
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 76 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALC 135
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVE-----IRKTIEALDQL 297
K+ GI V TLY LD++ + G+ P Y F+ V ++ + A
Sbjct: 136 KELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASMDPPEPSVSTVTSACIGS 195
Query: 298 KGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
P + D + +P+L +LG ++G P GGE+EAL RL++
Sbjct: 196 AYTPLKEDHDDHYGVPTLEELGFD-----TEGLLPPV--WVGGESEALARLERHLERKAW 248
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASKWND 412
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 249 VASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS---- 302
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 303 ------------LHGQLLWREFF 313
>gi|398969087|ref|ZP_10682700.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM30]
gi|398142781|gb|EJM31672.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM30]
Length = 481
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 145/325 (44%), Gaps = 56/325 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR HDN +L A +V VY P+ + + K F + ++
Sbjct: 3 LIWLRSDLRQHDNTALAAAAARGPTV-AVYLSSPQQWLEHDDAACKV-----DFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L +L A L++R + VL+EL + + +AV+ + E DE + + + A
Sbjct: 57 ELSASLGALNIPLLLRTADHWDQAPAVLLELCRQLNIEAVHVNEEYGVDESRRDAAVAVA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN-------YGGFREKVKGVEIRKTIEALD 295
+K +GI + LD L FK G + T + FR KV + +++ AL
Sbjct: 117 LKSKGIAFHSY-------LDQLLFKPGTVLTKTETYFQVFSQFR-KVCYERLHRSMPALV 168
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE-- 353
+ G ++ +++ +P+ + G + + + PA GE EA +RL FA
Sbjct: 169 KAPGKQAKLNIDSDPVPASVP-GFATPSESLRALWPA------GEQEAQRRLDTFADAQI 221
Query: 354 --YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
YQ++ K G + ++S +LA G +SPR + AA + N
Sbjct: 222 DYYQSERDFPAKPG----------TSQLSAYLAAGVISPRQ----------CLQAALQSN 261
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
GE S G+ + ELLWR+F++
Sbjct: 262 QGEFDSGKVGAVTWINELLWREFYK 286
>gi|416014635|ref|ZP_11562385.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. B076]
gi|416029112|ref|ZP_11572001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406636|ref|ZP_16483660.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 482
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 139/321 (43%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQLKIEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P ++ IP Q + K + GE EA +R+ F A+ Q
Sbjct: 169 RTPKAQQSLSIKSDSIP-------DQVEGFATPSKALRDLWPAGEAEARRRMATF-ADAQ 220
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K +D + ++S +LA G +SPR + AA N GE
Sbjct: 221 ISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQGEF 265
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ G+ + ELLWR+F++
Sbjct: 266 ETGDVGTVTWINELLWREFYK 286
>gi|156055622|ref|XP_001593735.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980]
gi|154702947|gb|EDO02686.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 651
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 158/373 (42%), Gaps = 80/373 (21%)
Query: 127 IVWFRNDLRVHDNESLNT----ANNESVSVLPVYCFD----------PRDYGKSS----- 167
I R DLRV DN L++ ++ +LP+Y F P D GKS
Sbjct: 8 IYLMRRDLRVADNPILHSLIHNKDHGFTHLLPLYVFAAQQIEVSGFIPEDGGKSPYPEAR 67
Query: 168 ---SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI--GA--- 219
F + GP+RA FL +SV DL+ + GS L +RVG + ++ L + GA
Sbjct: 68 SQLGAFWRCGPHRAKFLAQSVWDLKDGFEKIGSGLSIRVGMVDEIVKGLIERFEEGAGSK 127
Query: 220 -DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD--DLPFK----LGEMP 272
AV+ E +E + E + G++ K W Y +D DLPF+ L ++
Sbjct: 128 VSAVWMTSEEGVEEKREERSTKKICDKAGVDFK-LWQDEKYFVDDRDLPFEDPKDLSDIY 186
Query: 273 TNYGGFREKVKGVEIRKTIEALD----------QLKGLPSR-GDVEPGDIPSLLDLGLSQ 321
T Y RK++E L ++ LP DV P P ++ +
Sbjct: 187 TTY------------RKSVEPLRNAPRPDLPKPEMNSLPPFPTDVPPQHSPFVIPTKYEE 234
Query: 322 -SAAMSQ--GGKP-------------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
AA+ + +P + + GGE+ A +RL+ K +++G
Sbjct: 235 IEAALLKPINSQPLVKNPPKCPENTLSVHPFTGGESHAQERLEHLITSGSITGYKSSRNG 294
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG--AGSN 423
+ G +FS K+S +LA+G ++ R + + ++ ++ D E +G G+
Sbjct: 295 ----LMGTDFSTKLSAYLALGSITSRQIHASMSVFENGSTSDDRYKDLEGYGNGENEGTY 350
Query: 424 WLMFELLWRDFFR 436
+ FELLWRD+ R
Sbjct: 351 AVRFELLWRDYMR 363
>gi|429212758|ref|ZP_19203923.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M1]
gi|428157240|gb|EKX03788.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M1]
Length = 475
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 147/327 (44%), Gaps = 54/327 (16%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++W R+DLRV DN S A ++ V+ Y P G+ + D P + F +
Sbjct: 2 RRQLLWLRSDLRVRDN-SALAAAAQAGPVIACYLLSP---GQWRAHDDS--PNKVDFWLR 55
Query: 184 SVSDLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
++ L+++L L++R PE VL++L +++G AV + E E + +E
Sbjct: 56 NLQALQRDLARLNIPLLLREADTWSQAPE-VLLQLCRSLGIAAVRVNEEYGIHESRRDEA 114
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEAL- 294
++ + + G+ HLD L F G + T GG+ + + + + ++ AL
Sbjct: 115 VKRRLAEAGVGFH-------SHLDQLLFAPGSLLTRGGGYFQVFSQFRKLCYQRLATALP 167
Query: 295 DQLKGLPSRGDVEPGDIPSLLDL-GLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA-- 351
L P++ +E P +L G + SA +++ PA GE A +RL FA
Sbjct: 168 SCLPAPPAQAPLEVNSAPVPRELPGFTPSATLAREFWPA------GEKAAGERLDGFAED 221
Query: 352 --AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
A Y + + + DG + ++S +LA G LSPR + AA
Sbjct: 222 GLAHYHERRDRPDLDG----------TSQLSAYLAAGVLSPRQ----------CLHAALA 261
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFFR 436
N GE S G G + ELLWR+F++
Sbjct: 262 NNRGEFESGGPGPVAWINELLWREFYK 288
>gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max]
Length = 634
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 131/277 (47%), Gaps = 32/277 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYVWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG-----GETEALQRLKKFAAEYQAQ 357
G +E SL +LGL ++ KP +N++ G G A + L++F +
Sbjct: 177 EGKIEEC---SLEELGLE-----NESEKP-SNALLGRAWSPGWRNADKALREFVELHLLH 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K G + +SP+L G LS R +F
Sbjct: 228 YSKKRLK------VGGESTSLLSPYLHFGELSARKVF 258
>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
Length = 477
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 24/274 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN + A S +V VY DP S P R FL+ES+
Sbjct: 7 LFWHRRDLRLADNLGIQAAVEISPAVTGVYVLDPALIQPPQS-LPPMAPARLWFLLESLI 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ +A GS L++ G P VL LA+ +GA+AV +R+V + + ++ ++ +
Sbjct: 66 ELQQRWRAAGSRLLILEGDPVQVLPPLAERLGAEAVVWNRDVEPYSRERDRQVAKRLQAD 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRK--TIEALDQLKGLPSR 303
G +V W L + L G+ YG F +G V+ ++ TIEA L L S
Sbjct: 126 GRKVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPITIEAPSGLVDLHS- 184
Query: 304 GDVEPGDIP--SLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
D+ P P +LL Q + + GE+ AL++L FA P G
Sbjct: 185 -DLVPDRDPLAALLHRHGFQGTEIC--------PCRPGESAALEQLTLFA----DGPLSG 231
Query: 362 NK-DGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
+ D N S+ G ++ +S L++G LSPR +
Sbjct: 232 YEPDRNFPSVVGTSY---LSAALSVGTLSPRQAW 262
>gi|422679531|ref|ZP_16737804.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 482
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 138/321 (42%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQFKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P ++ IP Q + K + GE EA +R+ F A+ Q
Sbjct: 169 RTPKAQQSLSIKSDSIP-------DQVEGFATPSKALRDLWPAGEAEARRRMATF-ADAQ 220
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K +D + ++S +LA G +SPR + AA N GE
Sbjct: 221 ISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQGEF 265
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ G+ + ELLWR+F++
Sbjct: 266 ETGDVGTVTWINELLWREFYK 286
>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
Length = 484
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 128/283 (45%), Gaps = 21/283 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFRNDLRV+DN +L A++ V+PVY +P ++ G R +L
Sbjct: 10 RPAIVWFRNDLRVNDNAALLAASSHK-QVVPVYILEP------AANTRAIGGARKWWLHH 62
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L + L G+ L++ G P ++ L + A AVY +R + S+ ++ A+
Sbjct: 63 SLAKLGEKLADLGAPLMLMRGDPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDAL 122
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGLPS 302
+ + I V+ F G L+ + Y F ++ G+E R+ A D+L L +
Sbjct: 123 RAQDIVVESFAGQLLHEPTRVRTGNDTFYKVYSPFWRAIEGGIEDREPAPAPDRLTALAN 182
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
E +L D GL + + + K GE A +RL +F +E +
Sbjct: 183 APQSE-----TLSDWGLLPTK--PDWARGLRETWKPGEDGAHERLDEFVSE------RVC 229
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 405
+ + G + ++SP LA G ++P + LK + S
Sbjct: 230 GYASLRDVPGVESTSRLSPHLANGEITPAQIIQALKASDADAS 272
>gi|380513692|ref|ZP_09857099.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas sacchari
NCPPB 4393]
Length = 473
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 12/152 (7%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR DLR+HD +L A + + +PVY P D G ++G S+L S+
Sbjct: 4 AIVWFRRDLRLHDQPALQAALDAGHTPVPVYLHSPEDEGAWAAGAASR-----SWLQRSL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L L+ARGS L++R G E L ++ A+AVY +R + +++ +++
Sbjct: 59 AALDAQLRARGSRLILRQGPAEAALRQVIADCSAEAVYWNRRYEPATQPRDARLKRELRE 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG 277
+G+EV H L F+ ++ T GG
Sbjct: 119 QGLEVH-------SHNSALLFEPWQLATQQGG 143
>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 483
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 145/320 (45%), Gaps = 50/320 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR+ DN +L A E V+PVY P + G + G +L S+
Sbjct: 3 TLLWFRRDLRLTDNPALARAL-EDGEVIPVYIHAPEEEGDWAPGGASL-----WWLHHSL 56
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L ++L+ARG DLV+R G L L + GA V +R + + I+ ++D
Sbjct: 57 AALGEDLRARGVDLVIRQGASLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQLRD 116
Query: 246 EGIEVKYFWGSTLYH------LDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLK 298
+GI + F + L+ D P+K+ + F + G+ + + A ++++
Sbjct: 117 QGIRTQSFNAALLFEPWTVAKQDGTPYKV------FTPFWKACLGLGVPVDVTPAPERIQ 170
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF----AAEY 354
G P++ + PG+ +L LGL + G + GE AL RL +F A+Y
Sbjct: 171 G-PAQ--LPPGE--TLKSLGLLPDIDWAAG---FTELWQPGEAGALARLAEFMDEAVADY 222
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ ++DG S ++SP+L G + PR + A + A + G+
Sbjct: 223 DEMRNRPDRDG----------SSRLSPYLHFGEIGPR-------QAAAACQVAKDRHGGK 265
Query: 415 SGSSGAGSNWLMFELLWRDF 434
+ G S + E+ WR+F
Sbjct: 266 AAHQGIDS--FLREIGWREF 283
>gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 437
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R I WF+ DLR+ DN +L A S V+PV+ F P + S +TG FLIE
Sbjct: 3 RRVIFWFKRDLRIDDNRALFEACQNSFEVIPVFIFIPSILERFKSYDRRTG-----FLIE 57
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ L K ++ +G L +P+ V + L + G A++ +R S + EE ++
Sbjct: 58 SLKHLSKEIEKKGGRLYCFHDEPQRVFLTLIRKYGIQAIFTNRAFSWSGEEVEETVKKLC 117
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFK 267
+EG++ F + L +D +P++
Sbjct: 118 LNEGVDFVTFNDNFLAEIDKIPYR 141
>gi|345483304|ref|XP_001606405.2| PREDICTED: cryptochrome-1 [Nasonia vitripennis]
Length = 627
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 136/334 (40%), Gaps = 45/334 (13%)
Query: 117 NNGAAI----RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDK 172
++G AI ++ ++ WFR LR+HDN SL + + V+ DP G ++ +K
Sbjct: 52 SDGLAIQGDGKKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSANVSINK 111
Query: 173 TGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE 232
FL++ + DL ++L S L V G+P L +L + G ++ +
Sbjct: 112 W-----RFLLQCLEDLDRSLHQLNSRLFVIRGQPADALPKLFREWGTTSLTFEEDPEPYG 166
Query: 233 VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVE----- 286
+E I K+ GI V TLY LD++ K G+ P Y F+ + ++
Sbjct: 167 RVRDENITTLCKELGITVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVIARMDPPEYP 226
Query: 287 IRKTIEALDQLKGLPSRGDVEP-GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQ 345
A P + D + +P+L +LG M A GGETEAL
Sbjct: 227 AAAVTAACIGSAYTPLKDDHDDFFGVPTLEELGFDTEGLM-------APVWVGGETEALA 279
Query: 346 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTA 401
RL++ G S+ + +SP+L GCLS R + +L KK
Sbjct: 280 RLERHLERKAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLADLYKKIK 337
Query: 402 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+I S L +LLWR+FF
Sbjct: 338 KTIPPLS----------------LHGQLLWREFF 355
>gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|422598313|ref|ZP_16672576.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 482
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 138/321 (42%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQFKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P ++ IP Q + K + GE EA +R+ F A+ Q
Sbjct: 169 RTPKAQQSLSIKSDSIP-------DQVEGFATPSKALRDLWPAGEAEARRRMATF-ADAQ 220
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K +D + ++S +LA G +SPR + AA N GE
Sbjct: 221 ISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQGEF 265
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ G+ + ELLWR+F++
Sbjct: 266 ETGDVGTVTWINELLWREFYK 286
>gi|413953893|gb|AFW86542.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 654
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 135/301 (44%), Gaps = 39/301 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
++VWFR DLR+ DN +L A SVLP++ + P DYG+ G R S +L +
Sbjct: 7 TVVWFRRDLRIQDNPALAAAAKGG-SVLPIFIWCPSDYGQYYPG-------RCSRWWLKQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETV--LVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+ L K+L+ G LV+ + T+ L+E ++I A V +R + + KI+
Sbjct: 59 SLVHLGKSLELLGCPLVLIRAEDSTLAALLECVRSISATRVVYNRLYDPISLVLDNKIKN 118
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG--VEIRKTIEALDQLKG 299
+ GI ++ F G LY D+ + G+ T + + EK +EI + + A +L
Sbjct: 119 ELPAHGISIQSFNGDLLYEPWDVYDENGQAFTTFNKYWEKCMSLPIEISQYL-APTRLVA 177
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA----EYQ 355
P +V S+ DLGL S + + + G A L++F + EY
Sbjct: 178 APGLANVR---CCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFVSYGLLEY- 233
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW-NDGE 414
H G + + +SP+L G LS R ++ +K KW N+G+
Sbjct: 234 ---------SEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQV------KWQNEGK 278
Query: 415 S 415
S
Sbjct: 279 S 279
>gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584088|ref|ZP_16659203.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 482
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 138/321 (42%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQFKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P ++ IP Q + K + GE EA +R+ F A+ Q
Sbjct: 169 RTPKAQQSLSIKSDSIP-------DQVEGFATPSKALRDLWPAGEAEARRRMATF-ADAQ 220
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K +D + ++S +LA G +SPR + AA N GE
Sbjct: 221 ISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQGEF 265
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ G+ + ELLWR+F++
Sbjct: 266 ETGDVGTVTWINELLWREFYK 286
>gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357828|ref|ZP_12960518.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689067|gb|EHI53615.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 473
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 135/319 (42%), Gaps = 43/319 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+ DN +L A E+ V ++ P + + K P R FL+ V
Sbjct: 3 LVWFRNDLRLADNPALRHACAEAGEVAALFVISPTQWQQH-----KMAPIRQQFLLAQVD 57
Query: 187 DLRKNLQARGSDL-VVRV---GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K L A G L ++RV + T L L++ +G +YA++ + DE + + + A
Sbjct: 58 ELGKALAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSAM 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++ + +F G + + GEM + F R ++AL++ +
Sbjct: 118 LAEQEVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFS--------RAWLKALEEDGFVIH 169
Query: 303 RG---DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
R EP L + S A P GE EA +RL F +P
Sbjct: 170 RAPAPRAEPLPWQPLTEREWSYGALGEVTPDP---RWPVGEAEAQRRLHAF-----LEPA 221
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ + D A S +SP+LA G +SPR L++ G S
Sbjct: 222 VLDYEETRDFPAQAGTSI-LSPYLAAGIISPRQCVGVLQQRL-----------GHRPQSK 269
Query: 420 A--GSNWLMFELLWRDFFR 436
A G WL EL+WR+F+R
Sbjct: 270 AQPGFVWLN-ELVWREFYR 287
>gi|402548804|ref|ZP_10845657.1| deoxyribodipyrimidine photolyase [SAR86 cluster bacterium SAR86C]
Length = 471
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 42/319 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFRNDLR+ DN ++ A + S V ++ Y K + FLIE++
Sbjct: 3 SIIWFRNDLRIDDNPAMRAACDNSTEVYAIFL-----YSKDQLRKHNEANIKLDFLIENL 57
Query: 186 SDLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ L +LQ L++ PE +L + AK I D ++ +++ DE K + ++
Sbjct: 58 NSLSDSLQKLNVPLLIMASSGFDESPEIIL-KTAKEIDVDKIFFNKQFGEDEQKRDREVV 116
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK-VKGVEIRKTIEALD-QLK 298
+ ++ I V+ F +Y + + + F+ K V+ + +E LD + K
Sbjct: 117 SILEASDITVESFNDQIVYEAGSIRTGQDNAYSVFTPFKRKWVENFD----MEFLDIEHK 172
Query: 299 GLP-SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
+P ++G + D + MS GE AL RLK F + +
Sbjct: 173 YIPMAQGSISSNISSFNFDFKIEHKVDMS--------IWPTGEQAALDRLKNFL---ENK 221
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
+KD N I G + ++SP+LA+G +S + I K N+ E S
Sbjct: 222 ASNYSKDRNDPIIDG---TSRMSPYLALGIISSKR----------CILEGLKLNNFEFNS 268
Query: 418 SGAGSNWLMFELLWRDFFR 436
G + E++WR+F+R
Sbjct: 269 GNNGIIKWIDEIVWREFYR 287
>gi|392549764|ref|ZP_10296901.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas spongiae
UST010723-006]
Length = 452
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 134/317 (42%), Gaps = 32/317 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF +DLR+ DN +L A S + VY DP ++ G ++ F++ ++
Sbjct: 4 TLYWFTHDLRLSDNSALEYALKNSEQIAFVYVLDPSTKIANNYHSQLLGDHQTRFILNAL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L LQA G L+V G ++ + E + + + +V E + ++++
Sbjct: 64 QELADELQALGHQLIVLEGAAQSEVSEFIREHDINQLVVAEQVGEFEKRKLAELQSTHSK 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ FW TL+ + L M ++ FR KV+ + T+ A L+ P +
Sbjct: 124 --VNFTQFWQHTLFSQHQIA-TLDCMSGSFSKFRNKVEKKPL--TVSAPTSLES-PLTPE 177
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSM------KGGETEALQRLKKFAAEYQAQPP 359
P I + L G N M G+ + L AA+ +
Sbjct: 178 HWPKAIKVDNNCALLAWFERYGGAYTMPNEMPFFAGEHAGKYHLVSYLNSGAAK-TYKET 236
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ DG H+ S K SP+LA+G LSPR ++ + + S DG + S
Sbjct: 237 RNELDGWHN-------STKFSPYLAIGNLSPRQIWHAVLQYEQS--------DGANES-- 279
Query: 420 AGSNWLMFELLWRDFFR 436
+ W+ FELLWR++F+
Sbjct: 280 --TYWIKFELLWREYFQ 294
>gi|343403555|dbj|BAK61600.1| cryptochrome2c [Glycine soja]
gi|343403559|dbj|BAK61602.1| cryptochrome2c [Glycine soja]
gi|343403563|dbj|BAK61604.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 32/277 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG-----GETEALQRLKKFAAEYQAQ 357
G VE + P L +LGL ++ KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLE-----NESEKP-SNALLGRAWSPGWRNADKALTEFVEQHLLD 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K DS + +SP+L G LS R +F
Sbjct: 228 YSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|413953894|gb|AFW86543.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 632
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 134/301 (44%), Gaps = 39/301 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
++VWFR DLR+ DN +L A SVLP++ + P DYG+ G R S +L +
Sbjct: 7 TVVWFRRDLRIQDNPALAAAAKGG-SVLPIFIWCPSDYGQYYPG-------RCSRWWLKQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETV--LVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+ L K+L+ G LV+ + T+ L+E ++I A V +R + + KI+
Sbjct: 59 SLVHLGKSLELLGCPLVLIRAEDSTLAALLECVRSISATRVVYNRLYDPISLVLDNKIKN 118
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG--VEIRKTIEALDQLKG 299
+ GI ++ F G LY D+ + G+ T + + EK +EI + + A +L
Sbjct: 119 ELPAHGISIQSFNGDLLYEPWDVYDENGQAFTTFNKYWEKCMSLPIEISQYL-APTRLVA 177
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA----EYQ 355
P +V I DLGL S + + + G A L++F + EY
Sbjct: 178 APGLANVRCCSID---DLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFVSYGLLEY- 233
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW-NDGE 414
H G + + +SP+L G LS R ++ +K KW N+G+
Sbjct: 234 ---------SEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQV------KWQNEGK 278
Query: 415 S 415
S
Sbjct: 279 S 279
>gi|168060079|ref|XP_001782026.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666517|gb|EDQ53169.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 711
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 24/230 (10%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ +IVWF++DLR D+ L A V+P++ FD Y S R + L
Sbjct: 4 KKTAIVWFKHDLRTDDHPGLAFAAQYD-HVIPLFIFDSSFYAGCSEE-------RLASLF 55
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS---HDEVKSEEKI 239
++V+DLR++L++ GS LV+R + VL+ LA+ +GA + A EV HD V S
Sbjct: 56 DAVADLRRSLKSIGSTLVIRRARVNDVLLNLAQEVGASTIIAEEEVEEIWHDLVASVSAS 115
Query: 240 EA--AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+ ++ + EVK W ++LY ++ + ++P NY F K G + + A +
Sbjct: 116 LSVKSLSGQKTEVKQ-WNASLYDVEGIE----DLPDNYKEF--KRMGRRVLPPVNAPTSI 168
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL 347
LP+ D+E G +PSL D L+ S A S+ P + ++ +T+ + L
Sbjct: 169 PALPA--DIEEGHLPSLKDF-LASSKAKSK-ENPYSEVLRAAQTQPAESL 214
>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
Length = 361
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 135/315 (42%), Gaps = 44/315 (13%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
LR+HDN +L + +V VY DP S+ G + R FL++S+ DL +L+
Sbjct: 3 LRLHDNPALRECIQGADTVRCVYILDPWFAASSAVGIN-----RWRFLLQSLEDLDNSLR 57
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
S L V G+P V L K G + + + + I K+ G+EV
Sbjct: 58 KLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIE 117
Query: 254 WGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRGDVEPGD- 310
TLY LD + G P Y F+ + +E+ +K + + + + D++
Sbjct: 118 NSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHD 177
Query: 311 ----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAAEYQAQPPK 360
+PSL +LG + G PA +GGETEAL RL K + A Y+ P+
Sbjct: 178 DVYGVPSLEELGFP-----TDGLAPAV--WQGGETEALARLDKHLERKAWVANYER--PR 228
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
N + S G +SP+L GCLS R + L + + + S+
Sbjct: 229 MNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV---------KRNSTPP 273
Query: 421 GSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 274 LS--LYGQLLWREFF 286
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 136/313 (43%), Gaps = 43/313 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIES 184
I WFR DLR+ DN +L A + V+PV+ FD G+ +S P R FL++
Sbjct: 3 IHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFAS------PARTQFLLDC 56
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++ L L+ G LVVR G P L ++ + GA V +R+ + V+ + I+ A++
Sbjct: 57 LAALDAELRTFGLHLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQALR 116
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF--REKVKGVEIRKTIEALDQLKGLPS 302
+ G E F + ++ + ++ G T Y + R + + T++ + +L +P
Sbjct: 117 EAGYEAHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAEPVTVQDMPRLATIPL 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
EP +P L DL A + + GE AL+ L++F + P +
Sbjct: 177 PVS-EP--LPHLTDLLPDAPATLPR--------FPAGEAVALEALERF-----VRGPLAS 220
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
D + A + ++SP+L +G LSPR S
Sbjct: 221 YAQGRDLMAVAG-TSRLSPYLRLGVLSPRQCVAAALAAPPGPGPES-------------- 265
Query: 423 NWLMFELLWRDFF 435
W+ EL+WRDF+
Sbjct: 266 -WIG-ELIWRDFY 276
>gi|343403561|dbj|BAK61603.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 32/277 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG-----GETEALQRLKKFAAEYQAQ 357
G VE + P L +LGL ++ KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLE-----NESEKP-SNALLGRAWSPGWRNADKALTEFVEQHLLD 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K DS + +SP+L G LS R +F
Sbjct: 228 YSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|343403557|dbj|BAK61601.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 32/277 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKG-----GETEALQRLKKFAAEYQAQ 357
G VE + P L +LGL ++ KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLE-----NESEKP-SNALLGRAWSPGWRNADKALTEFVEQHLLD 227
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
K DS + +SP+L G LS R +F
Sbjct: 228 YSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|357139910|ref|XP_003571518.1| PREDICTED: (6-4)DNA photolyase-like [Brachypodium distachyon]
Length = 547
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 143/322 (44%), Gaps = 38/322 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFLI 182
+VWFR LRVHDN +L+ A + V PV+ DPR D S G + G R FL+
Sbjct: 17 MVWFRKGLRVHDNPALDAARRGAARVYPVFVLDPRYLRPDPAAHSPGSARAGVARVRFLL 76
Query: 183 ESVSDLRKNLQARGSDLVVRVGK---PETVLVELAKA-IGADAVYAHREVSHDEVKSEEK 238
ES+SDL L+ GS L++ + P+ + L IG A E + +++
Sbjct: 77 ESLSDLDAGLRRLGSRLLLLRARDDVPDALCAALRDWNIGKLCFEADTEPY--ALARDKR 134
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+ GIEV TL+ ++ K G P Y F + G + + +L
Sbjct: 135 VTDFAAALGIEVFTPVSHTLFDPAEIIEKNGGRPPLTYQSFL-AIAGEPPKPVMAEYSEL 193
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA- 356
+ G+ E +P L +LG +SQ + +GGETEAL+R+++ + +
Sbjct: 194 PLIGDTGEYELLPVPKLEELGYGD---ISQEN---ISPFRGGETEALKRMRESLQDKEWV 247
Query: 357 ---QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
+ PKG+ S + + +SP+L GCLS R + +++ S +K
Sbjct: 248 SMFEKPKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYHCIQEVYRSTKKHTKPPVS 302
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
+G +LLWRDFF
Sbjct: 303 LTG-----------QLLWRDFF 313
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens]
gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
Length = 574
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 133/323 (41%), Gaps = 41/323 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLTGATTFRCVFVLDPWFAGSTNVGINK-----WRFLLQ 75
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 76 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALC 135
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVE-----IRKTIEALDQL 297
K+ GI V TLY LD++ + G+ P Y F+ V ++ + A
Sbjct: 136 KELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASMDPPEPSVPTVTSACIGS 195
Query: 298 KGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
P + D + +P+L +LG ++G P GGE+EAL RL++
Sbjct: 196 AYTPLKEDHDDHYGVPTLEELGFD-----TEGLLPPV--WVGGESEALARLERHLERKAW 248
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASKWND 412
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 249 VASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS---- 302
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 303 ------------LHGQLLWREFF 313
>gi|444425344|ref|ZP_21220786.1| deoxyribodipyrimidine photolyase [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444241341|gb|ELU52866.1| deoxyribodipyrimidine photolyase [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 398
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 42/266 (15%)
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G + FL ES+ L +L A L V P + + +G +Y +E
Sbjct: 3 GSAKRQFLDESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEMLGVTHLYCDAFPGSEEQ 62
Query: 234 KSEEKIEAAMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
+ I + I EV+ +L ++DLPF L ++P + FR+K + V +++
Sbjct: 63 DVVDHIRQESEHLTICQQEVR-----SLLTVEDLPFALEDLPDTFTKFRKKAENVSLKEP 117
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ-SAAMSQGGKPAANSMKGGETEALQRLKK 349
+ L +P LGL+ + + + KP GGE L+ ++
Sbjct: 118 FATVTALPTIP---------------LGLALPTLRLIRDVKPCL--FTGGEQAGLEHARR 160
Query: 350 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
+ + A K ++G + G ++S K SPWLA GCLSP++++ LK+ A
Sbjct: 161 YFSSTLASEYKQTRNG----LDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYERLKGA--- 213
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 214 ---------NESTYWIYFELLWREYF 230
>gi|399220401|gb|AFP33464.1| cryptochrome 1 [Dicentrarchus labrax]
Length = 567
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 137/323 (42%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN SL + + S+ VY DP G S+ G + R FL+ +
Sbjct: 5 TIHWFRKGLRLHDNPSLRDSIRGADSLRCVYILDPWFAGSSNVGIN-----RWRFLLHCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDNSLRKLNSRLYVIRGQPTDVFPRLFKEWQINRLSYEYDSEPFGKERDAAIQKLACE 119
Query: 246 EGIEVKYFWGSTLYHL-DDLPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
+EV TLY+L + G P Y F+ ++ VE+ T+E +
Sbjct: 120 AEVEVMVQVSHTLYNLVKIIELNDGHPPLTYKRFQALINRMDAVELPAETITLEVIRNCA 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
S + +PSL +LG ++ ++ P GGETEAL RL K + A
Sbjct: 180 TPISEDHDDKFGVPSLEELGF-ETEGLTTAIWP------GGETEALMRLERHLERKAWVA 232
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ N + S G +SP+L GCLS R + L T + K N+
Sbjct: 233 NFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFRL----TDLYRKVKKNN 280
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 281 SPPLS-------LYGQLLWREFF 296
>gi|348175729|ref|ZP_08882623.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora spinosa NRRL
18395]
Length = 453
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 117/278 (42%), Gaps = 45/278 (16%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +I F DLRVHDN L A V+P++ FD ++ T P R +FL+
Sbjct: 2 RTTICLFTRDLRVHDNPVLRHAARAD-RVVPLFVFD-----ETLLQLPFTRPNRIAFLLG 55
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLR++L G LVVR G P + L +GA V+ +VS E + A+
Sbjct: 56 CLRDLRRSLGEAGGGLVVRHGTPAIEVARLVDEVGATEVHVAADVSAYARSRENGLRLAL 115
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGE----MPTNYGGFREKVKG--VEIRKTIEALDQL 297
+ G + H G+ + T Y FR V+ I EAL
Sbjct: 116 AEHGCTLHVHEAVVTAHPPGRVTPAGKDHFAVFTPY--FRRWVETPPRRIAAAPEALRMP 173
Query: 298 KG-----LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA 352
G +P+R D+ PG + L +GGET A Q++ ++
Sbjct: 174 DGVRTGPMPAREDLCPGALSPELP--------------------RGGETTARQQMLRWFE 213
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSP 390
+ A + D HD + G + + ++SP+L GCLSP
Sbjct: 214 QGVA-----DYDEGHDDLAG-DATSRLSPYLHFGCLSP 245
>gi|381399807|ref|ZP_09924825.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
gi|380772870|gb|EIC06556.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
Length = 448
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 125/276 (45%), Gaps = 31/276 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+VWFR+DLR+ DN +L A + ++ V D + S+G G +L S+
Sbjct: 6 SLVWFRDDLRLADNPALRAAVDRGEPIIAVSVLD-----EQSAGVRPLGGAARWWLHHSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
++L + L+ +GS LV+R G V+ LA+ +GA AV+ +R S E + + ++ +++
Sbjct: 61 AELGERLREKGSGLVLRRGAASEVIPSLAREVGAGAVFWNRRYSASEREVDAGLKTSLRA 120
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI----RKTIEALDQLKGL- 300
G+EV F S L+ + G T YG F K + R+ + +L G+
Sbjct: 121 GGLEVSSFAASLLFEPWTVRTGAG---TPYGVFTPFWKACQQLPAPREPLPEPRELHGVS 177
Query: 301 --PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
P+ D++ D GL + GG GE A +RL F AE A
Sbjct: 178 SYPASDDLD--------DWGLLPTRPDWAGG--LLERWTPGELAARRRLHAFLAEDVA-- 225
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
+ D D G S +SP L G LSP ++
Sbjct: 226 ---DYDHARDEPAGGATSM-LSPRLRWGELSPFQVW 257
>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
gi|357603254|gb|EHJ63675.1| cryptochrome [Danaus plexippus]
Length = 534
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 141/328 (42%), Gaps = 44/328 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+++WFR+ LR+HDN SL++A ++ S P++ FD G G++ R +L+E
Sbjct: 4 GNVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYN-----RMRYLLE 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+++DL + + G L++ G+P+ + L + G + ++ + + A
Sbjct: 59 ALNDLDQQFRKYGGKLLMIKGRPDLIFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGV-EIRKTIEALD----QL 297
+D G+ + TL++ D + G + P Y F V+ + + ++ +D
Sbjct: 119 RDIGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNPPRPVDDVDLNGVNF 178
Query: 298 KGLPS---RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLK-KFAAE 353
LP R V P DLG+ + GGET AL++++ + A E
Sbjct: 179 GSLPESFYREFVVFDKAPKPEDLGV-----FLENEDIRMIRWVGGETAALKQMQERLAVE 233
Query: 354 YQA------QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
Y+ P GN D + G S +SP L GCLS R + L+ +
Sbjct: 234 YETFCRGSYLPTHGNPD-----LLGPPIS--LSPALRFGCLSVRRFYWSLQDLFQQVHQG 286
Query: 408 SKWNDGESGSSGAGSNWLMFELLWRDFF 435
A + ++ +L+WR++F
Sbjct: 287 RL----------ASTQFITGQLIWREYF 304
>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
Length = 483
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 37/312 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VW R+DLR+ DN +L A + V+P+ D + S G G +L S+
Sbjct: 11 VVWLRDDLRLDDNPALAEAADSGRPVVPLVVLD-----EESDGVRSLGGTHKWWLHHSLQ 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
K+L +G+ L++R GK +V++ ++ GA + +R ++ +EAA+ +
Sbjct: 66 CFGKDLADKGAPLILRRGKASEHVVDIVESTGATTLLMNRRYDQASRAVDDAVEAALGSD 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL---PSR 303
+EV+ F + L+ D + K G Y F + + E R I+ D+L L P
Sbjct: 126 -VEVQRFTANILHDPDKVRTKTGGWYKVYTPFWKNLAEDEPRDPIDPPDKLASLDDQPRS 184
Query: 304 GDVEPGD-IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
+E D +P+ D GG A K GE A +R ++F+ E+ P G
Sbjct: 185 DRLEEWDLLPTRPDW---------SGG--IAAFWKVGEAAAHERFEEFSDEWLNDYPDGR 233
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
D+ + ++SP L G +SP ++ A + + K G++ +
Sbjct: 234 DRPGDDA------TSRMSPHLRWGEISPYRLW----HMAEACANRRKTIPGDALKT---- 279
Query: 423 NWLMFELLWRDF 434
EL+WRDF
Sbjct: 280 --FKKELVWRDF 289
>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
Length = 536
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 137/326 (42%), Gaps = 40/326 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
S++WFR+ LR+HDN SL++A E+ P++ FD G G++ R +L+E
Sbjct: 4 GSVLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETAGTKVVGYN-----RMRYLLE 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ DL K + G L++ GKP V L + G + ++ +E ++ A
Sbjct: 59 ALDDLDKQFKKYGGRLLLVKGKPSAVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTAC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
++ G+ + TL+ D + G + P Y F V I +D K
Sbjct: 119 REIGVTCREHVSHTLWEPDTVIKANGGIPPLTYQMFLHTV--ATIGDPPRPVDNAKLRGI 176
Query: 303 RGDVEP----------GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLK-KFA 351
+ P +P+ DLG+ + GGET AL++++ + A
Sbjct: 177 KFGTLPLCFYEEFTVYDKVPNPEDLGV-----FLENEDIRMIRWVGGETAALKQMQHRLA 231
Query: 352 AEYQAQPPKGNKDGNHDS--IYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
EY+ +G+ H S + G S +SP L GCLS R + L+ + S
Sbjct: 232 VEYETF-CRGSYLPTHGSPDLLGPPIS--LSPALRFGCLSVRKFYWSLQDLFQQVHQGSL 288
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFF 435
+ ++ +L+WR++F
Sbjct: 289 ----------CSTQYITGQLIWREYF 304
>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
NSW150]
gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
longbeachae NSW150]
Length = 472
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 135/301 (44%), Gaps = 57/301 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR++DN + A + V+P+Y +D ++ G +A +L S+
Sbjct: 4 ALVWFRFDLRLNDNPAFIEACSHHQFVIPLYIYDEKN--------SVLGGAQAWWLYHSL 55
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L +L RG +L++R G P ++++LAK + +VY +R + ++ I+A + +
Sbjct: 56 TSLSNSLAQRGLNLILRKGDPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKATLLE 115
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK----------------GVEIRK 289
GI+V GS L+ + K G+ + + + K GVE++
Sbjct: 116 RGIDVHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQLINIQRPMNLEHRPVGVEVQS 175
Query: 290 TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK 349
E L+ K LP+ ++ +A S+ P GE A Q+LK+
Sbjct: 176 --ELLNDWKLLPT----------------INWAARFSEYWIP-------GEGGAQQKLKE 210
Query: 350 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD--ELKKTATSISAA 407
F E+ K N+D N + ++SP L G +SP ++ EL K + A
Sbjct: 211 F-IEHHLNGYKNNRD-----FPIKNATSRLSPHLHFGEISPWTILRAIELAKLNPNCDLA 264
Query: 408 S 408
S
Sbjct: 265 S 265
>gi|423197809|ref|ZP_17184392.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
gi|404630927|gb|EKB27571.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
Length = 473
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 135/318 (42%), Gaps = 41/318 (12%)
Query: 127 IVWFRNDLRVHDNESLN--TANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+VWFRNDLR+ DN +L AN+E V+ L + P + + K P R FL+
Sbjct: 3 LVWFRNDLRLADNPALRHGCANDEPVAAL--FIISPTQWRQH-----KLAPVRQRFLLAQ 55
Query: 185 VSDLRKNLQARGSDL-VVRV---GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
V L + L A G L ++RV + L L + +G +YA++ + DE++ + +
Sbjct: 56 VDALGRELAALGIPLHLLRVETFAEVPAALAGLCRELGVTQLYANQAIEIDELRRDLAVT 115
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A+ ++GI +F G + + GEM + F R ++ALD+ +
Sbjct: 116 TALAEQGIGCHWFNGCCVLPPGRVLTGSGEMFKVFTPFS--------RAWLKALDEDGFV 167
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
R G+ L G A GE EA +RL F QA
Sbjct: 168 IHRAPAPRGEPLPWQPLAERDFVDAVLGELAADPRWPVGEAEASRRLNDFLE--QAVLDY 225
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
G + +I G + +SP+LA G +SPR L++ G S A
Sbjct: 226 GETR-DFPAIAGTSV---LSPYLAAGIISPRQCVAALQQRL-----------GYRPQSKA 270
Query: 421 --GSNWLMFELLWRDFFR 436
G WL EL+WR+F+R
Sbjct: 271 QPGFVWLN-ELIWREFYR 287
>gi|421663905|ref|ZP_16104045.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC110]
gi|421695547|ref|ZP_16135154.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-692]
gi|404565878|gb|EKA71041.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-692]
gi|408712202|gb|EKL57385.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC110]
Length = 480
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 136/317 (42%), Gaps = 31/317 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++WFR DLR+HD+ +L A+ + S L + P + + + P + SF + +
Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS-LGLVILSPEQWKQHAD-----APIKISFYLRQL 59
Query: 186 SDLRKNLQARGSDLVVRV----GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+K L A LV++V + + + +K + VYA+ E+ +E+K ++ ++
Sbjct: 60 RTLQKELAALHIPLVIQVIPYWKEIANFISDFSKTYNIEKVYANIEIGVNELKRDKTVQD 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ G E+ F T++ L + + + + F+ K + L Q +P
Sbjct: 120 YLNQHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFK---KACYTKLDTSGLPQCYPVP 176
Query: 302 SRGDVEPGDIPSL--LDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
++ + P D +DL + S K + GE AL++L +F E
Sbjct: 177 NKQNEVPLDFLQRKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCH-Y 235
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K +D H I G + K+SP+L +G LS R L + G +
Sbjct: 236 KLERDFPH--IQG---TSKLSPYLNIGILSIRQCLQALFRN----------QHGNFHLAN 280
Query: 420 AGSNWLMFELLWRDFFR 436
G + ELLWR+F++
Sbjct: 281 EGQQTWLDELLWREFYQ 297
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 130/271 (47%), Gaps = 25/271 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VWFR DLR++DN + A + V+P+Y +D GK+S +G + +L S
Sbjct: 3 VALVWFRYDLRLNDNPAFIEACSHHQFVIPLYIYD----GKNSV----SGEAQDWWLHHS 54
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++ L ++L G +L++R G P ++ +L K + +VY +R + ++KI+AA+
Sbjct: 55 LTSLSESLAQLGLNLILRKGDPFEIISDLVKKLSVSSVYWNRCYEPAAISRDKKIKAALL 114
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+ GIEV+ GS L+ + K G+ + F K + I+ L+ P+
Sbjct: 115 ERGIEVQSSNGSLLHEPWTIKNKNGDY---FKVFTPYWKHCKQHLNIQPSMYLENRPAGI 171
Query: 305 DVEPGDIPSLLDL-GLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
+V+ + L ++ +A S+ P GE A Q+L +F E+ K N+
Sbjct: 172 EVQSEVLKDWKLLPAINWAAQFSEYWTP-------GEAGAQQKLHEF-IEHHLNDYKKNR 223
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
D N + ++SP L G +SP ++
Sbjct: 224 D-----FPIKNATSRLSPHLHFGEISPWTIL 249
>gi|253997258|ref|YP_003049322.1| deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
gi|253983937|gb|ACT48795.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
Length = 473
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 141/325 (43%), Gaps = 65/325 (20%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+VWFR DLR +D+ +L A S V V+ FD + S D+ R F+ ESV
Sbjct: 6 SLVWFRRDLRDYDHAALYYALKASQQVYCVFVFDTDILNQLSDKADR----RVEFIWESV 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L+ LQ RGSDL+V G + + +LA+ + A AV+A+ + + + ++ ++
Sbjct: 62 QELKTALQQRGSDLIVLHGSAQHEVPQLAQTLQAQAVFANHDYEPSAIARDAQVAQQLQA 121
Query: 246 EGIEVKYFWGSTLYHLDDL------------PFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
I+ ++ ++ D++ P+K + T F K VE
Sbjct: 122 HDIDFHHYKDQAIFEKDEVLTMAHKPYSVFTPYKNAWLKT-VNDFYLKAYPVE-----HY 175
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGET---EALQRLKKF 350
L++L ++P + SL G Q +S P M G T + ++R+K +
Sbjct: 176 LNKL------AKIQPQPLASLESFGF-QRTNLSSLRLP--TGMSGSATLFDDFIERIKHY 226
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
K +D ++ G ++ +S L G +S R +L +TA I
Sbjct: 227 ---------KEARD--FPAVKGVSY---LSVHLRFGTISIR----QLARTAMQI------ 262
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
G GA WL EL+WRDF+
Sbjct: 263 -----GGFGA-ETWLS-ELIWRDFY 280
>gi|154305828|ref|XP_001553315.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10]
Length = 651
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 154/361 (42%), Gaps = 56/361 (15%)
Query: 127 IVWFRNDLRVHDNESLNT----ANNESVSVLPVY-----------------CFDPRDYGK 165
I R DLRV DN L++ ++ +LP+Y C P +
Sbjct: 8 IYLMRRDLRVGDNPVLHSLVDNKDHGFTHLLPLYVFAAQQIEVSGFITTDGCKSPYPEAR 67
Query: 166 SSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI------G 218
S G F + GP+RA FL ESV DL+ L+ S L +RVG + V+ +L +
Sbjct: 68 SQIGAFWRCGPHRAKFLAESVWDLKGGLEKIESGLAIRVGMVDEVVKDLIEGFQKTGGSK 127
Query: 219 ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD--DLPFKL-GEMPTNY 275
AV+ E +E + E E G++ + W Y +D D+PFK ++P Y
Sbjct: 128 VSAVWMTSEEGVEEKREERSTEKICDKAGVDFQ-LWQDEKYLIDDRDIPFKDPKDLPDVY 186
Query: 276 GGFREKVKGVEI--RKTIEALDQLKGLPSRGDV----EPGDIPS--------LLDLGLSQ 321
+R+ V+ + R + ++ P DV P IP+ LL +Q
Sbjct: 187 TTYRKSVEPLREAPRPALPKPEKNSLPPFPTDVPTQHSPFAIPTNYEEIESALLKPINAQ 246
Query: 322 SAAMSQGGKP----AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSC 377
+ P + + GGE+ A +RL+ K +++G + G +FS
Sbjct: 247 PLIKNPPSYPENSLSVHPFTGGESHAQERLEHLITSGSINAYKSSRNG----LMGTDFST 302
Query: 378 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG--AGSNWLMFELLWRDFF 435
K+S +LA+G ++ R + + + +++ D E G G+ + FELLWRD+
Sbjct: 303 KLSAYLALGSITSRQIHSSMSIFENGSDSDNRYKDLEGYGKGENEGTYGVRFELLWRDYM 362
Query: 436 R 436
R
Sbjct: 363 R 363
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 136/320 (42%), Gaps = 44/320 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A ++V V+ V+C D RD D P R +++ +
Sbjct: 6 LFWHRRDLRLTDNLGLAAAKEQTVKVVGVFCLD-RDILTR----DDIAPARVKYMMGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L ++ GS L++ G P V+ +LA + A AVY + +V K + ++ A++D+
Sbjct: 61 ELSQSYGQIGSQLLITQGTPSQVIPQLASTLSAKAVYWNLDVEPYARKRDREVTIALQDK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSR-- 303
I V+ FW L H E P + ++ + TI + L+GL +
Sbjct: 121 DITVQNFWDQLL-HPPGAVLTQSEQPYKVYTPFWRNWSLQDKPTISPQIKNLQGLTATEL 179
Query: 304 ---GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF--AAEYQAQP 358
+ ++P+ DLG S + + GET A RL++F +A YQ
Sbjct: 180 ATVDQIYVSELPTAEDLGYSWETPL---------LLAPGETAAQARLEEFSHSAIYQYDE 230
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
+ S+ A L G +S R+++ T++ A S
Sbjct: 231 QRNFPFNQGTSLLSAA--------LKFGVISLRAIWQ------TTVEALEN-----CRSE 271
Query: 419 GAGSNWLMF--ELLWRDFFR 436
A N + + EL WR+F++
Sbjct: 272 EARVNVITWQKELAWREFYQ 291
>gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 482
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 138/321 (42%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQFKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P ++ IP Q + K + GE EA +R+ F A+ Q
Sbjct: 169 RTPKAQQSLSIKSDSIP-------DQVEGFATPSKALRDLWPAGEAEARRRVATF-ADAQ 220
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K +D + ++S +LA G +SPR + AA N GE
Sbjct: 221 ISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQGEF 265
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ G+ + ELLWR+F++
Sbjct: 266 ETGDVGTVTWINELLWREFYK 286
>gi|374711980|gb|AEZ64510.1| deoxyribodipyrimidine photolyase [Streptomyces chromofuscus]
Length = 461
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 129/310 (41%), Gaps = 41/310 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++V F +DLR+HDN SL A + V+P++ D R GF P R +FL + +
Sbjct: 4 AVVLFTSDLRLHDNPSLRAALAAADEVIPLFVRDRR---IEELGF--AVPNRRAFLADCL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL L+ RG LVVR G+ + +A GA VY VS ++ E ++ A++
Sbjct: 59 RDLDAGLRERGGRLVVRSGEVAEEVCRVAAGTGARDVYVAGGVSGHALRREGRLRGALES 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+G + G +Y F + + + LD + +P D
Sbjct: 119 QGRRLHVHDAVVTAVAPGAVTPAGSGTDHYAVFTPYFRRWSRERIRDPLDAPRTVPVPRD 178
Query: 306 VEPGDIPSLLDL-GLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
V +PS ++ G+S+ A +GGE A +RL + A+ +
Sbjct: 179 VGSEALPSRAEVSGVSEGLA------------EGGERAARRRLTAWRRTGLAR-----YE 221
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
HD + G + + ++SP L G LSP + + + G G++
Sbjct: 222 DRHDDLAG-DATSRLSPHLHFGTLSPAELVHRAR-----------------AAGGPGADA 263
Query: 425 LMFELLWRDF 434
+ +L WRDF
Sbjct: 264 FVRQLCWRDF 273
>gi|318041065|ref|ZP_07973021.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. CB0101]
Length = 251
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 122/277 (44%), Gaps = 37/277 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VWFR DLR+ D+ +L+ A N+ +VLPV+ D RD +T R +F++ +
Sbjct: 3 CTVVWFRRDLRLSDHAALSEACNQG-AVLPVFVLD-RDL----LFHPETAVARVAFMLNN 56
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L +L+ RG L++R G P L+++ + GAD V AH + E++ ++
Sbjct: 57 LQALDADLRQRGGRLLIRCGDPAEQLLQVVQLSGADGVIAHTD--------SERLVGRVR 108
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
D + + GE+ Y G+ + + A +++ P
Sbjct: 109 DARVSRTLAAHRIPLRWVEPAGACGEL-MAYSGWSRQWHQAMASPALPAPERVVVPPPSS 167
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSM-KGGETEALQRLKKFAAEYQAQPPKGNK 363
+ +PSL LGL +P A + GG AL+RL++F +G+
Sbjct: 168 ALPDTPVPSLEALGL----------RPDAKPIPPGGTAAALKRLEQFC--------EGSA 209
Query: 364 DGNHD---SIYGANFSCKISPWLAMGCLSPRSMFDEL 397
++ S A + +SP+L G +SPR L
Sbjct: 210 SRSYYWELSYPSAKVTTGLSPYLKFGVISPRQCLQRL 246
>gi|408483909|ref|ZP_11190128.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. R81]
Length = 481
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 137/321 (42%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR+HDN +L A+ + VY P+ + P + F + ++
Sbjct: 3 LIWLRTDLRLHDNTALAAASQRG-PIAAVYLITPQQWQSHDD-----APCKVDFWLRNLQ 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
DL K L A L++R + VL +L + + ++V+ + E E + + + A
Sbjct: 57 DLSKTLGALNIPLLIRTAATWDQAPDVLSKLCRELSVESVHVNEEYGIHESRRDAAVSKA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ +G+ + LD L F+ G + T G + + + + V + AL ++
Sbjct: 117 LEADGVTFHRY-------LDQLFFQPGSVLTKTGTYFQVFSQFRKVCYTRLHSALPRMVA 169
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK----GGETEALQRLKKFAAEYQ 355
P P L L +G P ++S++ GE EA +RL F A+ Q
Sbjct: 170 APK------AQAP--LKLKSDPVPNTVEGFAPPSDSLRALWPAGEDEARRRLDAF-ADQQ 220
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
K +D + ++S +LA G +SPR + AA + N GE
Sbjct: 221 ISYYKDERD-----FPAKPGTSQLSAYLAAGVVSPRQ----------CLHAALQTNGGEF 265
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
S G+ + ELLWR+F++
Sbjct: 266 ESGDLGAITWINELLWREFYK 286
>gi|433639824|ref|YP_007285584.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
gi|433291628|gb|AGB17451.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
Length = 467
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 134/322 (41%), Gaps = 62/322 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR DN L+ A + LPV+ FDP D K S P R +F++++++
Sbjct: 3 VHWHRQDLRTADNRGLSVAAADEA--LPVFVFDP-DVLKDGS------PPRVAFMLDALA 53
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
LR + SDLVV G P + EL GAD V + + + +E+++ A+ D
Sbjct: 54 RLRARYRDLESDLVVAWGDPAEAIPELVAEYGADGVVWNEDYTGLSRARDERVQEAITDA 113
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP----- 301
G +V+ D + + G + T+ G K V + LD+ K P
Sbjct: 114 GGDVERV-------HDAVCHEPGAITTSDG----KPYAVFSYYGTKWLDREKDEPVPEPD 162
Query: 302 --SRGDVEPGD--IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA----E 353
S VEP D +PSL DLG ++ PAA G A RL+ F A E
Sbjct: 163 AGSLATVEPADEALPSLRDLGFAE---------PAAEIPPAGTGPARDRLETFCAGDIYE 213
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
Y + +D D + +IS LA G + R + + ++ T DG
Sbjct: 214 YAEK-----RDDLADEA-----TARISQDLAFGTIGIREVHERVEATL----------DG 253
Query: 414 ESGSSGAGSNWLMFELLWRDFF 435
A +L WR+F+
Sbjct: 254 ADEGQAASVEAFRRQLAWREFY 275
>gi|256823595|ref|YP_003147558.1| deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069]
gi|256797134|gb|ACV27790.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069]
Length = 459
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 135/318 (42%), Gaps = 44/318 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
+ ++VWFRNDLRV DN +L A E +V+ +Y +P + ++ P + F+
Sbjct: 3 KNINLVWFRNDLRVGDNPALFYA-AEQGAVIGIY-LEPVEQREAHD----DAPCKIGFIY 56
Query: 183 ESVSDLRKNLQARGSDL----VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
+SV++LRK L L V + +V+L + D VY + E +E +++
Sbjct: 57 DSVNELRKKLNKLNIPLHSFKVKDYQQSVEKIVQLVEQYNTDGVYFNNEYPFNERNRDDE 116
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+E + +G EVK F G + + + GE + +++ +E KT
Sbjct: 117 LEKVLLGKGKEVKRFDGDVIIPPNSVSTGKGEPYKVFTPYKK--SWIEFHKT-------- 166
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+ P IPS D + + G + GE A RLK+F
Sbjct: 167 -----QGISPLPIPSKQDFKIEKQHDYDFGHDYRKDLWPAGELAAQDRLKEFL------- 214
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
PK H I + +SP+L +G +S + I + +W +G+ +
Sbjct: 215 PKAGYYKEHRDIPAVKGTSMLSPYLTVGAISAKQ----------CIESLLEWYEGDQEAF 264
Query: 419 GAGSNWLMFELLWRDFFR 436
+ WL E++WR+F+R
Sbjct: 265 YLDT-WLS-EIIWREFYR 280
>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
Length = 535
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 129/316 (40%), Gaps = 33/316 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN SL + + V+ DP G S+ G +K FL++ +
Sbjct: 20 VHWFRRGLRLHDNPSLREGLKGARTFRCVFVLDPWFAGSSNVGINKW-----RFLLQCLE 74
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL ++L+ S L V G+P L +L K G A+ + + + ++
Sbjct: 75 DLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQEL 134
Query: 247 GIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV------EIRKTIEALDQLKG 299
GI V TLYHL D+ + G P Y F + + E T +L+
Sbjct: 135 GISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHT 194
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
+ E +P+L +LG ++G P +GGE+EAL RL++
Sbjct: 195 PLTDDHDEKYGVPTLEELGFD-----TEGRLPPV--WQGGESEALARLERHLERKAWVAS 247
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
G S+ + +SP+L GCLS R + +L I A S
Sbjct: 248 FGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAF------PPLSL 299
Query: 420 AGSNWLMFELLWRDFF 435
G +LLWR+FF
Sbjct: 300 HG------QLLWREFF 309
>gi|149188415|ref|ZP_01866708.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
gi|148837633|gb|EDL54577.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
Length = 472
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 153/365 (41%), Gaps = 64/365 (17%)
Query: 86 LSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTA 145
++ S +S++ + + ++LG NG + RR I WF +DLR+HDN+ L A
Sbjct: 1 MTNSLLSYQGCYCVSDVWEKMTLG--------NGMSKRRG-IYWFNHDLRLHDNKLLQKA 51
Query: 146 NNESVSVLPVYCFDPRD--YGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDL---- 199
+E V L FD Y + + + F ++++ +L ++L G L
Sbjct: 52 -SEHVDRLHCVYFDELKTMYDRRFLPVEIDDSAKREFKMQALGELNQSLMQLGQVLHQVS 110
Query: 200 VVRVGKPETVLVELAKAIGADAVYAHREVSH--DEVKSEEKIEAAMKDEGIEVKYFWGST 257
V + + + L ++ +Y S D V + +A +K I + +
Sbjct: 111 VTSLDEAVSQLEQMFDYYSITDLYVANSASWYIDYVVT----KALLKRTDIVLHRDDTES 166
Query: 258 LYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL-------KGLPSRGDVEPGD 310
L+H LPF L ++P ++ F+ K++ + + + QL GLP+ EP
Sbjct: 167 LFHQTLLPFDLEDLPHSFTRFKNKMESIVVPSPSQTTTQLPRPMNNRDGLPASYGCEPSS 226
Query: 311 IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 370
+ +S++GGE L ++ + A A K + + +
Sbjct: 227 L-------------------KLHSSVRGGELAGLGHVRDYFATQAALSYKSTR----NEL 263
Query: 371 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 430
+ S K S WLA G +SPR++ ++L + + S + W++FELL
Sbjct: 264 DNWSSSTKFSLWLANGNVSPRAVVNQLHRFE------------QKHGSNESTYWILFELL 311
Query: 431 WRDFF 435
WR++F
Sbjct: 312 WREYF 316
>gi|410912170|ref|XP_003969563.1| PREDICTED: uncharacterized protein LOC101062553 [Takifugu rubripes]
Length = 1321
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 138/325 (42%), Gaps = 42/325 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ I WFR LR+HDN L A + + PV+ DP+ + KS G R FL
Sbjct: 1 MTHTCIHWFRKGLRLHDNPGLMAALRDCKELYPVFILDPQLHNKS------VGVNRCRFL 54
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
I ++ DL +L+ + L V GKPE V +L + + + ++ +
Sbjct: 55 IGALKDLDLSLRQLNTRLFVVRGKPEEVFPKLFCQWKITKLTYEYDTEPLSLSRDKTVTR 114
Query: 242 AMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
++ GI+V TL+ ++ + G+ P Y + VK + K ++E L
Sbjct: 115 LAEEHGIDVVCKVSHTLFDINRIIEENNGKTPLTYKSMQAIVKKLGPPKRPLSAPSMEDL 174
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL----KKF 350
+ S + IP+L D G A + + P GGE EAL+RL K+
Sbjct: 175 KDVNTPCSESHEKKYRIPTLEDFG-HNLADLPEEQFP------GGEQEALRRLEEHMKRT 227
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A + PK + + S + +SP++ GCLS R+ + L S
Sbjct: 228 AWVCNFEKPKTSPNSLSPS------TTVLSPYVTFGCLSVRTFWWRL----------SDV 271
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
+G+ S+ S L +LLWR+FF
Sbjct: 272 YEGKKHSAPPVS--LHGQLLWREFF 294
>gi|383771224|ref|YP_005450289.1| DNA photolyase [Bradyrhizobium sp. S23321]
gi|381359347|dbj|BAL76177.1| DNA photolyase [Bradyrhizobium sp. S23321]
Length = 479
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 133/313 (42%), Gaps = 37/313 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR+DLR+ D+ +L+ A V+ +Y D + G +L +S+
Sbjct: 8 IVWFRDDLRLSDHPALHAAAKTGAPVICLYVLD-------DAAGRAPGGAARWWLAQSLR 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L +++ RG L++R G V+ E+A+AIGA AVY + E+ +EAA+
Sbjct: 61 ALGADIRRRGGSLILRKGPAAGVIPEVARAIGATAVYWNEVAQAPHQSVEKALEAALAKL 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI+ F G L + K G + F R+ + D K LP+ ++
Sbjct: 121 GIDSHIFPGDLLVAPSAIRNKEGRGLRVFTPF--------WRRVLALGDPPKPLPAPKEL 172
Query: 307 EPG---DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
G +L L S GG S + GE A RL+ F ++ A G++
Sbjct: 173 RAGPKITSDALESWKLEPSKPDWAGG--LRESWEPGEASARTRLRDF-LKHTAHSYAGDR 229
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
D + +SP L G LSPR ++ A+++ E+ + G G
Sbjct: 230 DRPDR-----KGTSSLSPHLRFGELSPRQVWH-----------AARFAAAENPAIGPGVE 273
Query: 424 WLMFELLWRDFFR 436
+ EL WR+F R
Sbjct: 274 KFLSELGWREFCR 286
>gi|443710319|gb|ELU04573.1| hypothetical protein CAPTEDRAFT_178510 [Capitella teleta]
Length = 597
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 133/327 (40%), Gaps = 46/327 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ + WFR LR+HDN +L E+ + ++ DP G S G +K FL+
Sbjct: 17 KKNVLYWFRRCLRLHDNAALVEVLKEADTFRCIFILDPWFAGASQVGINK-----WRFLL 71
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+S+ DL L+ S L V G+P + +L + A+ + + + +
Sbjct: 72 QSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEEDPEPFGKERDSAVCTK 131
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-------KGVEIRKTIEAL 294
+D GIEV TL++L + K G P Y F+ + + VE ++
Sbjct: 132 SQDAGIEVIIKTSHTLFNLQKILDKNSGVPPLTYKRFQRILARMDPPPRPVEAVTSVTIG 191
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ + S D + G +P+L DLG A KGGETEAL RL K
Sbjct: 192 SVVTPINSDHDDQYG-VPTLEDLGFDTDNL-------EAAVWKGGETEALSRLDRHLERK 243
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ PK S G +SP+L GCLS R + L +
Sbjct: 244 AWVASFEK--PKMTPQSLMASPTG------LSPYLRFGCLSTRLFYWRLTDLYRKV---K 292
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K D G +LLWR+FF
Sbjct: 293 KRTDMPLSIHG--------QLLWREFF 311
>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
Length = 478
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 133/320 (41%), Gaps = 59/320 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I W R DLR+ DN +L A + VLPV+ FD +D ++ + G +
Sbjct: 12 IWWIRRDLRLSDNAALTAAVDSGAPVLPVFIFDSQDEDLGAAPRFRLG--------LGLE 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L + L+ GS L++R G VL +L K GA AV+ R + I+ +K +
Sbjct: 64 HLAQRLERLGSRLILRRGSALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKETLKSQ 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ + G+ L+ + K G M Y F V+G ++ + V
Sbjct: 124 GVAAHSYSGNLLFEPWTVETKTGGMYRVYTPFWRAVRGRDVPGLL--------------V 169
Query: 307 EPGDIPS--------LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF----AAEY 354
PG IP+ LD +AAM +G A + GE A RL +F A Y
Sbjct: 170 APGTIPAPEQWPNSDQLDT-WKLAAAMRRGAPVLAAHCRVGEEAAQDRLDEFIETGIARY 228
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
Q DG + +S LA G +SP+ M+ + A +++
Sbjct: 229 QDLRDLPAVDG----------TSGLSENLAWGEISPQRMW---HRGAEAMA--------- 266
Query: 415 SGSSGAGSNWLMFELLWRDF 434
G++GA + + E++WR+F
Sbjct: 267 QGAAGAET--FLKEVVWREF 284
>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
Length = 481
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 136/321 (42%), Gaps = 48/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLRV DN +L A +E V+ V+ P+ + P +A+FL +++
Sbjct: 5 LVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHD-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDL-VVRVGKPETVLVEL---AKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L +RG L + + +V L + DA++ +++ +E + +E A
Sbjct: 60 QLLQGALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTA 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I F S L + EM + FR + + +
Sbjct: 120 QLNRQSIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQ 179
Query: 302 SRGDV-----EPGDIPSLLDLGLSQSAAMSQGGKPAANSM-KGGETEALQRLKKFAAEYQ 355
+ G V EP D P A NS+ GE ALQRL+ F E Q
Sbjct: 180 NSGAVELSPLEPFDYPQ----------------HSADNSLFPAGEEAALQRLRSFCRE-Q 222
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
Q +D +I G SC +SP+LA+G +SPR F+ L+ + E
Sbjct: 223 VQDYLQQRD--RPAIAGT--SC-LSPYLALGIVSPRQCFNRLRAECPDLL--------ER 269
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
SGA + WL EL+WR+F+R
Sbjct: 270 SDSGAFT-WLN-ELIWREFYR 288
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 119/285 (41%), Gaps = 40/285 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+VWFR+DLR+ D +L A V+PVY + P + G G +L S+
Sbjct: 35 SLVWFRHDLRLQDQPALVAAVARGEPVIPVYIWSPDEDGDWPPGAASRW-----WLHHSL 89
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L + L+ GS L++R G T L+ L GADAVY R ++ + +++ ++
Sbjct: 90 HQLNEQLEELGSRLIIRQGNALTELLSLIDDTGADAVYWTRRYEPAAIQRDSRVKTELRQ 149
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ + F G L+ + K G Y F K ++T P +
Sbjct: 150 RNVLAQSFNGQLLFEPWQIETKQGR---PYQVFTAFWKTCLTQRT----------PDEPE 196
Query: 306 VEPGDIPS---------LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
P D S L DL L + A G A GE A Q L +F
Sbjct: 197 PAPSDFLSPRPWPKSAKLNDLSLRPTIAWDTG---FAERWVPGEKAARQELHRF-----L 248
Query: 357 QPPKGNKDGNHD--SIYGANFSCKISPWLAMGCLSPRSMFDELKK 399
+ P + D +++G + ++SP L G +SPR+++ E ++
Sbjct: 249 ESPVFDYVTMRDLPALHG---TSRLSPHLHFGEISPRTIWHETQR 290
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 133/326 (40%), Gaps = 73/326 (22%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI FR DLR+ DN L A S V+P + FDPR GF+ P FL+ES+
Sbjct: 8 SIFVFRRDLRIDDNLGLRAAVESSDEVIPCFIFDPRLASSKRLGFN---PNAFQFLLESL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL++ +A+G L + G E ++ +LA +GADAV+ + + + + +E K
Sbjct: 65 EDLQRQFKAKGGRLYLFSGIAEDIIGQLAGKLGADAVFVNEDYTPFSRRRDEATRNTCK- 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G++VK+ T H D L + G + T G + Q S+ +
Sbjct: 124 -GLDVKF----TQVH-DCLLNEQGTVLTQQG------------RPYVVFSQFFRAGSKRN 165
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSM----------KGGETEALQ------RLKK 349
+ IPS+L G + PA+ + +GG T+ALQ R +
Sbjct: 166 IS---IPSMLAEGKFYTGEPGIEETPASEKLLPLKNEKLFSRGGRTQALQVLEDLSRFEN 222
Query: 350 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
+AAE+ +G + +S +G +S R + ++
Sbjct: 223 YAAEHDYPSLQG--------------TTGLSAHNKLGTISIREFYHYVRNEL-------- 260
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFF 435
GE L+ +L WRDFF
Sbjct: 261 ---GEDHP-------LIRQLYWRDFF 276
>gi|405952216|gb|EKC20054.1| Cleavage stimulation factor 77 kDa subunit [Crassostrea gigas]
Length = 1237
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 132/316 (41%), Gaps = 32/316 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN SL A S S VY DP G S G +K FL++ +
Sbjct: 701 VHWFRKGLRLHDNPSLREALKGSSSYRCVYILDPWFAGSSQVGINKW-----RFLLQCLE 755
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL +L+ S L V G+P + ++ K + + + + I+ K+
Sbjct: 756 DLDTSLRKLNSRLFVLRGQPTDLFPKIFKEWNITTLSFEEDPEPFGKERDGAIQMLAKEA 815
Query: 247 GIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI----RKTIEA--LDQLKG 299
G+EV TLY L + G P Y F+ + +E +TI + L + K
Sbjct: 816 GVEVIVKTSHTLYDLQKIIAMNGGSPPLTYKRFQSVLAKMEAPSEPEETINSGFLVKTKT 875
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
+ + +P+L +LG ++G PA GGE EAL RL++
Sbjct: 876 PIAEDHDDKYGVPTLEELGFD-----TEGLGPAV--FHGGEAEALTRLERHLERKAWVAS 928
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
+ S++ + +SP+L GCLS R + +L++ + K D G
Sbjct: 929 FERPKMSQQSLFPSQNV--LSPYLRFGCLSARLFYWKLRELYRKV---KKRKDPPLSLHG 983
Query: 420 AGSNWLMFELLWRDFF 435
+LLWR+FF
Sbjct: 984 --------QLLWREFF 991
>gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF]
Length = 487
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ASIV + +DLR+HD+ L A E+ V+P++ DP G GF RA+FL +
Sbjct: 2 KASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDP---GIKKVGFHAAN--RAAFLAD 56
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL L+ RG LVVR G P V+ EL + GA+ V+ VS +++ AA+
Sbjct: 57 CLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAAL 116
Query: 244 KDEGIEV 250
+ G E+
Sbjct: 117 EGTGAEL 123
>gi|359073433|ref|XP_002693610.2| PREDICTED: cryptochrome-2 [Bos taurus]
Length = 591
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 137/325 (42%), Gaps = 45/325 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R S L
Sbjct: 20 SSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGIN-----RWSRLCRK 74
Query: 185 VSDLRKNLQA-RGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
LR+ +A S G E +++ + + G + + + + I
Sbjct: 75 TPTLRRGSRATEPSPRRGEAGTGEAIMIPVVQEWGVTRLTFEYDSEPFGKERDTAIMKMA 134
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLP 301
K+ G+EV TLY LD + G+ P Y F+ + +E+ RK + ++ +
Sbjct: 135 KEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEG 194
Query: 302 SRGDV-----EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKF 350
R ++ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 195 CRAEIQESHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAW 247
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A Y+ P+ N + S G +SP+L GCLS R + L + K
Sbjct: 248 VANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KR 295
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
N S L +LLWR+FF
Sbjct: 296 NSTPPLS-------LFGQLLWREFF 313
>gi|443625802|ref|ZP_21110240.1| putative Deoxyribodipyrimidine photo-lyase [Streptomyces
viridochromogenes Tue57]
gi|443340760|gb|ELS54964.1| putative Deoxyribodipyrimidine photo-lyase [Streptomyces
viridochromogenes Tue57]
Length = 461
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 134/321 (41%), Gaps = 60/321 (18%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG---PYRASF 180
R S+ F DLRVHDN L A S V+P++ D +G +TG P RA+F
Sbjct: 2 RVSVALFTADLRVHDNPVLVAALKGSEYVVPLFVVD--------TGMRRTGFVVPNRAAF 53
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L +S++DL L+ARG LVVRVG +A GA V+ S V+ E+++
Sbjct: 54 LADSLADLDSALRARGGRLVVRVGDVVEETCRVAAETGAAVVHIAGGTSRYAVRREDRLR 113
Query: 241 AAMKDE--GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
A + + G+ V + + P FR + +G +R + A
Sbjct: 114 AELAGDRRGLRVHDASVTAVPPGALTPAGKDHFAVFTPYFR-RWEGFSVRGVLPA----- 167
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSM-KGGETEALQRLKKF----AAE 353
DV P +P + L + +++ G P + ++ GGE+EA +RL+ + A
Sbjct: 168 -----PDVVP--VPDVRSARLPRGRSIAPG--PTSPALPTGGESEARRRLRSWLSGPLAA 218
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
Y A+ + ++SP+L GCLSP + +
Sbjct: 219 YDDH----------HDDLAADATSRLSPYLHFGCLSPTELLHRAR--------------- 253
Query: 414 ESGSSGAGSNWLMFELLWRDF 434
G++ + +L WRDF
Sbjct: 254 --AQDNPGAHAFVRQLAWRDF 272
>gi|46446306|ref|YP_007671.1| photolyase [Candidatus Protochlamydia amoebophila UWE25]
gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
Length = 471
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 128/289 (44%), Gaps = 34/289 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPV--YCFDPRDYGKSSSGFDKTGPYRASFLIE 183
SIVWFR D R+ DN +LN A + V+PV + F+P + G +L
Sbjct: 5 SIVWFRQDFRLEDNPALNAATQKGGPVIPVFNWVFNPEKEWQ-------LGGASQWWLYY 57
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ L+ +L G L++R P L+E+A GAD VY +R ++ + KI+ +
Sbjct: 58 SLISLKNDLSELGLSLIIRKEDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKTEL 117
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK-VKGVEIRKTIEALDQLKGLPS 302
+ +GI+ F G+ L+ + K G+ + F + +K + + LK
Sbjct: 118 QKQGIKAHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLKLNDPEVPLPVPHSLKKFVG 177
Query: 303 RGDVEPGDIPSLL-----DLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
+ E D +LL D GL + S G K A +K G T + + + +
Sbjct: 178 QLQTESIDSLNLLPKIKWDKGLKE--VWSPGAKSAKALLKKGLTGVIDQY----LDIRDL 231
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
P +HD + +SP+L G +SPR ++ +K+ +TS A
Sbjct: 232 P-------DHDG------TSLLSPYLHFGEISPRMIWQAVKENSTSKGA 267
>gi|378952815|ref|YP_005210303.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens F113]
gi|359762829|gb|AEV64908.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens F113]
Length = 483
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 137/324 (42%), Gaps = 54/324 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L A + V VY P + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALAAAAAQGPCV-AVYLTSPEQWRTHDD-----APCKIDFWLRNLG 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L L L++R + VL++L + + AV+ + E +E + + + A
Sbjct: 57 ALSVALDELNIPLLIRDAAHWQQAPHVLLKLCRELNIGAVHINEEYGLNETRRDAEAARA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ D+GIE HLD L FK G + T G + + + RK + LPS
Sbjct: 117 LNDQGIEFH-------SHLDQLLFKPGSVLTKTGNYFQVFS--QFRKVCYSRLHFS-LPS 166
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQ--GGKPAANSMK----GGETEALQRLKKFAAE--- 353
P+ G+++ +Q G P + +++ GETEA +RL F +
Sbjct: 167 LAATPVRQAPT----GITRDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTFVDQHID 222
Query: 354 -YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
YQ + K G + ++S +L G +SPR + AA + N
Sbjct: 223 DYQGERDFPAKPG----------TSQLSAYLVAGVVSPRQ----------CLHAALQANQ 262
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
GE S AG + ELLWR+F++
Sbjct: 263 GEFESGSAGVVTWINELLWREFYK 286
>gi|346992466|ref|ZP_08860538.1| deoxyribodipyrimidine photo-lyase [Ruegeria sp. TW15]
Length = 477
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 42/311 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFR DLR+ D +L A ++PV+ D +R +E+ +
Sbjct: 9 ILWFRRDLRLRDYPALTAAVRSGRPIVPVFILD-----DQVQALGAAPKWRLGLGLEAFA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
K L GS+L++R G VL +L GA AV+ R + ++ I+A++ ++
Sbjct: 64 ---KALDQIGSNLILRRGTALRVLKDLIHETGAGAVFWSRAYDPKAINRDKHIKASLNEQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GIEV+ F G L+ + K G+ + V G + + + ++ D+
Sbjct: 121 GIEVRSFAGHLLFEPWTIATKAGQPFRVFTPMWRSVSG----RDVAMPEPTPARIAKPDL 176
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA---EYQAQPPKGNK 363
P L D L + M +G ++ GE AL +L +F YQ + ++
Sbjct: 177 WPAS-DRLSDWNLDRD--MQRGATIVRPFVRPGEAAALDQLDRFLENIDHYQEARDRLDQ 233
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 423
G D +S +L++G + PR+++ ++ N +GS G +
Sbjct: 234 VGTSD----------LSEYLSLGEIGPRTIWHRVQ------------NADRTGSRGGEA- 270
Query: 424 WLMFELLWRDF 434
+ +L+WR+F
Sbjct: 271 -FLRQLVWREF 280
>gi|168038306|ref|XP_001771642.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677081|gb|EDQ63556.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 665
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 31/254 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I+WF++DLR+ D+ + A+ VLPVY FDP +G+ K L ++V
Sbjct: 1 AILWFKHDLRLDDHPGVAAASAYK-RVLPVYIFDPY----VCAGWSKE---LLESLCDAV 52
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS-------HDEVKSEEK 238
SDLRK L+ GSDL+V + E VL LA+ IGA ++ EV H ++S EK
Sbjct: 53 SDLRKELRLLGSDLIVLTARTEHVLSRLAQKIGATSIITEEEVESTWQRTVHSVLESLEK 112
Query: 239 IE-AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
E +++ + +E+ W + LY D P + +P NY F+ G+ + + +
Sbjct: 113 EEPSSISETKLELDQ-WSAPLY---DTP-ESASIPDNYQAFQR--IGLRTLAPLPSPAKF 165
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
GLP G + G +P + ++S + P ++K +++ + L QA
Sbjct: 166 PGLP-EGLTDTGSLPDFKE--FTESVEAIRRKNPWWETLKAAQSQPGESLLP-----QAS 217
Query: 358 PPKGNKDGNHDSIY 371
P +K+G + Y
Sbjct: 218 NPSSSKNGVSSAEY 231
>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 475
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 138/319 (43%), Gaps = 42/319 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S V+ V+C DP + D P R ++++ +
Sbjct: 6 LFWHRRDLRISDNIGLAAACQKSQKVIGVFCLDPDILER-----DDIAPARVTYMMGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ GS L++ P + LA + A AV +R+V + ++ A++++
Sbjct: 61 ELQQRYAEAGSQLLILHQNPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP-SRGD 305
GI V+ FW L+ ++ G Y F + K E+L +GL + D
Sbjct: 121 GIAVESFWDQLLHAPGEIRTNSGNPYKVYTPFWKNWKDQAKAAPAESLKNGEGLTETEQD 180
Query: 306 VEPG----DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----AEYQAQ 357
V ++P+ +LG + ++ ++ GE A QRL++F +YQ Q
Sbjct: 181 VVKKVGVMELPTAKELGFTWDNSL---------MLEPGEKAAKQRLEEFCDRAIDDYQHQ 231
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
DG + ++S L G + R+++ + +TA S + + DG
Sbjct: 232 RNLPAIDG----------TSRLSAALKFGAIGIRTVW-QATQTAIERSRSDETRDG---- 276
Query: 418 SGAGSNWLMFELLWRDFFR 436
W EL WR+F++
Sbjct: 277 ---IQTWQQ-ELAWREFYQ 291
>gi|398826896|ref|ZP_10585124.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
gi|398219708|gb|EJN06173.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
Length = 508
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 139/350 (39%), Gaps = 60/350 (17%)
Query: 111 HRPLDPNNGAAIRRAS-------------------IVWFRNDLRVHDNESLNTANNESVS 151
H DP NG + RR IVWFR+DLR+ D+ +L+ A
Sbjct: 2 HTAYDPINGRSYRRTRHAFQIVNEASLTTPSAPPIIVWFRDDLRLSDHPALHAAAKTGAP 61
Query: 152 VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLV 211
V+ +Y D + G +L +S+ L + ARG L++R G V+
Sbjct: 62 VVCLYVLD-------DAAGRAPGGAARWWLAQSLRTLGAEIAARGGSLILRKGPAARVVA 114
Query: 212 ELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM 271
E+ + GA AVY + E ++EAA+ G++ + F G L + K G
Sbjct: 115 EVVRESGASAVYWNGIAQAPHQAVERQLEAALAKLGVDSQSFLGDLLVPPSAIRNKEGRG 174
Query: 272 PTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGK 330
+ F +V + + K + A QL+ P+ +L L + GG
Sbjct: 175 LRVFTPFWRRVLALGDPPKPLPAPKQLRAGPNIAS------DTLESWALEPTTPDWAGG- 227
Query: 331 PAANSMKGGETEALQRLKKF----AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMG 386
S GE A RL+ F A Y + +++G + ++SP L G
Sbjct: 228 -LRESWTPGEASARARLRDFLKTIARSYVGDRDRPDREG----------TSRLSPHLRFG 276
Query: 387 CLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
LSPR +F A+++ E+ + G G + EL WR+F R
Sbjct: 277 ELSPRQVFH-----------AARFAAAENPALGPGIEKFLSELGWREFCR 315
>gi|410994568|gb|AFV96168.1| cryptochrome 2 [Talitrus saltator]
Length = 565
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 129/318 (40%), Gaps = 37/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L A + +Y DP G S+ G +K FL++ +
Sbjct: 54 VHWFRRGLRLHDNPALRDAIVNCETFRCIYILDPWFAGSSNVGVNKW-----RFLLQCLE 108
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
D+ +L+ S L V G+P L +L K + + + I ++
Sbjct: 109 DVDNSLRNLNSRLFVVRGQPANALPQLFKEWNTTVLSFEEDPEPFGRARDASIIGIAQEM 168
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPT-NYGGFREKVKGVEIRKT----IEALDQLKGL- 300
GIEV TLY LD + K G P Y F+ + ++ IEA D
Sbjct: 169 GIEVIVRTSHTLYELDKIIKKKGGKPPLTYKTFQNILAMMDPPPPPVAPIEASDLKHAYT 228
Query: 301 PSRGDVEPG-DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
P + D + +P+L LG ++ PA KGGETEAL RLK
Sbjct: 229 PLQHDHDDKYGVPNLEHLGFE-----TEHLPPAV--WKGGETEALSRLKHHLERKAWVAS 281
Query: 360 KGNKDGNHDSIYGANFSC--KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
G S+ F+C +SP+L GCLS R + EL T I +
Sbjct: 282 FGRPKMTPQSL----FACPTGLSPYLRFGCLSARKFYTELNVLYTKIKKVP------APV 331
Query: 418 SGAGSNWLMFELLWRDFF 435
S G LLWR+FF
Sbjct: 332 SLHG------HLLWREFF 343
>gi|372487277|ref|YP_005026842.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
gi|359353830|gb|AEV25001.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
Length = 482
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 48/318 (15%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+++VWFR DLR +D+ +L A + V + FD D+ R F+ ES
Sbjct: 4 SALVWFRRDLRDYDHAALYHALKSARRVWCAFVFDSDILEALPGRSDR----RVEFIRES 59
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+++L LQA+G L+VR G + LA+ +G AV+A+R+ + + A ++
Sbjct: 60 LAELHVALQAKGGGLMVRHGPAAAEIAALARQLGVVAVFANRDYEPRAKARDAAVAADLE 119
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE----KVKGVEIRKTIEALDQLKGL 300
+GI + F ++ D++ K G T + ++ K++ +R +D+ G
Sbjct: 120 RDGIALHLFKDQAVFDGDEVLTKGGTPYTVFTPYKNCWLGKLEDFHVRPY--PVDRYSGH 177
Query: 301 ---PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
P G G +PSL D+G + G P + + QRL+++A +
Sbjct: 178 LAPPPDG----GGVPSLADIGFLPTDLERIGVVPGMSGGAARWQDFRQRLERYAEQR--- 230
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
+ ++ G ++ +S +L GCLS R + A W G G+
Sbjct: 231 --------DFPAVKGVSY---LSVYLRFGCLSIRQL------------AGEAWRSGGPGA 267
Query: 418 SGAGSNWLMFELLWRDFF 435
+ WL EL+WRDF+
Sbjct: 268 ----ATWLS-ELIWRDFY 280
>gi|350572388|ref|ZP_08940688.1| deoxyribodipyrimidine photo-lyase [Neisseria wadsworthii 9715]
gi|349790172|gb|EGZ44091.1| deoxyribodipyrimidine photo-lyase [Neisseria wadsworthii 9715]
Length = 511
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 137/340 (40%), Gaps = 39/340 (11%)
Query: 71 QASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWF 130
Q L I +SA + + F L N ++ L R G + + ++VWF
Sbjct: 5 QIIILYEIKVSALARW----VKFLINLRGNRVECLL-----RKYSLEAGFMMFQTTLVWF 55
Query: 131 RNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRK 190
RNDLRV D+ +L A + V+ +Y F+P + S + G R F+ + +S+L+
Sbjct: 56 RNDLRVFDHTALQEAVRFGLPVVGLYVFEPIE-----SVHSEGGRRRRVFVHQCLSELQS 110
Query: 191 NLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEV 250
L +G L V VG E + A+ I A V + V E I A + ++G
Sbjct: 111 RLAEKGVPLFVTVGLAEQDVPAFAREIDAIYVVCASADEPEAVNQENMIAARLIEDGCRF 170
Query: 251 KYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK-------GLPSR 303
K L L G T + +R+ +A D + GL
Sbjct: 171 KAVNDHVLLSKFTLADSEGRPYTEFQVYRKAWLAASAGMVWQASDDWQTLARLQTGLSEN 230
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 363
+ P +IPSL LG++ + GG+ AA+ + E L R+ + E Q K N+
Sbjct: 231 LTIAP-EIPSLAQLGVADQSVTVAGGEQAADELLA---EFLLRMGDYHPE-QGLSVKCNE 285
Query: 364 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 403
++ P+L G LS R + D +K + S
Sbjct: 286 S-------------QLWPYLRFGVLSVRYVIDLIKNKSAS 312
>gi|424924871|ref|ZP_18348232.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens R124]
gi|404306031|gb|EJZ59993.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens R124]
Length = 481
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 140/325 (43%), Gaps = 56/325 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR HDN +L A +V VY P+ + + K F + ++
Sbjct: 3 LIWLRSDLRQHDNTALAAAAARGPTV-AVYLLSPQQWLEHDDAACKV-----DFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L L L++R + VL+EL + AV+ + E E + + + A
Sbjct: 57 ELTSRLGELNIPLLLRTADHWDQAPAVLLELCVQLNVQAVHVNEEYGIHESQRDAAVAVA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN-------YGGFREKVKGVEIRKTIEALD 295
+K +GI + LD L FK G + T + FR KV + +++ AL
Sbjct: 117 LKTKGIAFHSY-------LDQLLFKPGTVLTKTDTYFQVFSQFR-KVCYERLHRSMPALV 168
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE-- 353
+ G ++ +++ +P+ + G + + + PA GE EA RL FA
Sbjct: 169 KTPGKQAKLNIDSDPVPAAVA-GFATPSESLRALWPA------GEQEARHRLDTFADAQI 221
Query: 354 --YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
YQ++ K G + ++SP+LA G +SPR + AA + N
Sbjct: 222 DYYQSERDFPAKPG----------TSQLSPYLAAGVISPRQ----------CLQAALQSN 261
Query: 412 DGESGSSGAGSNWLMFELLWRDFFR 436
GE S G+ + ELLWR+F++
Sbjct: 262 QGEFDSGKVGAVTWINELLWREFYK 286
>gi|384918306|ref|ZP_10018388.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. 357]
gi|384467791|gb|EIE52254.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. 357]
Length = 473
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 127/313 (40%), Gaps = 45/313 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VW R DLR+ D+ +L+ A V+PV+ RD+ + G +R + +
Sbjct: 8 LVWIRRDLRLTDHAALSKAAGMGRPVIPVFI---RDHTVDALG--AAPKWRLGLGLAVYA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
D L A GS LV+R G VL L GAD VY R D V+ + ++ A++
Sbjct: 63 D---RLAAMGSALVLRAGPAREVLERLLDETGADTVYWQRAYDPDSVERDTAVKDALRAR 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+E + F G L+ + + G Y + V+ + + + A +L
Sbjct: 120 GVEAQSFAGHLLFEPWTVETRQGGYYKVYSPYWRAVQHRGVARPLSAPAELSA------- 172
Query: 307 EPGDIPSLLDLGLSQ-SAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
P P+ L Q A M +G AA + GE A RL FA +D
Sbjct: 173 -PHTWPTSERLDDWQLGAQMRRGAAVAAPYQQVGEQAAQDRLASFA-----------RDA 220
Query: 366 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG----ESGSSGAG 421
D G N GC SM E + IS A W+ G ++G GA
Sbjct: 221 IADYRDGRNMVATD------GC----SMLSE-NLSLGEISPAQCWHAGRRAMQAGKDGA- 268
Query: 422 SNWLMFELLWRDF 434
W+ EL+WRDF
Sbjct: 269 EPWVK-ELVWRDF 280
>gi|411010414|ref|ZP_11386743.1| deoxyribodipyrimidine photolyase [Aeromonas aquariorum AAK1]
Length = 473
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 132/316 (41%), Gaps = 37/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+ DN +L V +Y P + + K P R FL+ V
Sbjct: 3 LVWFRNDLRLADNPALRHGCANDGPVAALYILSPTQWRQH-----KLAPVRQRFLLAQVD 57
Query: 187 DLRKNLQARGSDL-VVRV---GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L ++L A G L ++RV + L +L + +G +YA++ + DE + ++ + A
Sbjct: 58 ALGRDLAALGIPLHLLRVETFAEVPAALADLCRELGVTQLYANQTIEIDEQRRDQAVTTA 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI + G + + GEM + F R ++ALD+ +
Sbjct: 118 LAEQGIGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFS--------RAWLKALDEDGFVIH 169
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
R G+ L + G A GE EA +RL F QA G
Sbjct: 170 RVPAPRGEPLPWQPLAERDFVDAALGELAADPRWPVGEAEASRRLNDFLE--QAVLDYGE 227
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA-- 420
+ +I G + +SP+LA G +SPR L++ G S A
Sbjct: 228 TR-DFPAIAGTSV---LSPYLAAGIISPRQCVAALQQRL-----------GYRPQSKAQP 272
Query: 421 GSNWLMFELLWRDFFR 436
G WL EL+WR+F+R
Sbjct: 273 GFVWLN-ELIWREFYR 287
>gi|383863231|ref|XP_003707085.1| PREDICTED: cryptochrome-1-like [Megachile rotundata]
Length = 589
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 132/323 (40%), Gaps = 41/323 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNVGINK-----WRFLLQ 75
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 76 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALC 135
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRK------TIEALDQ 296
K+ GI V TLY LD++ K G+ P Y F+ V +++ + T +
Sbjct: 136 KELGISVVQKVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVACMDVPEPPVPTVTFACVGS 195
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
+ +P+L +LG ++G P GGE+EAL RL++
Sbjct: 196 AYTPVKEDHDDHYGVPTLEELGFD-----TEGLLPPV--WVGGESEALARLERHLERKAW 248
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASKWND 412
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 249 VASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS---- 302
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 303 ------------LHGQLLWREFF 313
>gi|448455076|ref|ZP_21594402.1| deoxyribodipyrimidine photolyase [Halorubrum lipolyticum DSM 21995]
gi|445814191|gb|EMA64159.1| deoxyribodipyrimidine photolyase [Halorubrum lipolyticum DSM 21995]
Length = 526
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 108/257 (42%), Gaps = 46/257 (17%)
Query: 127 IVWFRNDLRVHDNESLNTA----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
+ W R DLRV DN L A +++ PV+ FDP D R L+
Sbjct: 3 LFWHRRDLRVADNVGLAAATGARDDDRGPAAPVFVFDP-------DVLDHASDVRVRRLL 55
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+ ++ LR + + RGSDL+V G PETVL ELA A+ AD V +R+ S + + + A
Sbjct: 56 DGLAALRADYRDRGSDLLVARGDPETVLPELAGALDADRVVWNRDYSGLARERDASVRTA 115
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK---TIEALDQLKG 299
+ D GI+ + + L+ D + G+ + Y + +K G E T EA D +
Sbjct: 116 LNDAGIDREAHHDAVLHTPDSIRTNAGDPYSVYTYYWKKWTGRETDAPAPTPEASDLVDA 175
Query: 300 -------------------LPSRG----DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSM 336
P G V GD+PS DLG ++ P A+
Sbjct: 176 DALATTVGGDGGALADGGGRPDGGVEADRVAVGDLPSPADLGFAE---------PDADIG 226
Query: 337 KGGETEALQRLKKFAAE 353
G A RL F +E
Sbjct: 227 AAGTEAARDRLDAFLSE 243
>gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
Length = 455
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ASIV + +DLR+HD+ L A E+ V+P++ DP G +GF T P RA+FL +
Sbjct: 2 KASIVLYTSDLRLHDHPPLRAATREAEEVVPLFVRDP---GIEKAGF--TAPNRAAFLAD 56
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ L L+ RG LVVR G P ++ EL + GA+ V+ +S +++ A+
Sbjct: 57 CLAGLDAGLRERGGRLVVRAGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTAL 116
Query: 244 KDEGIEV 250
+ G E+
Sbjct: 117 EGTGAEL 123
>gi|392382530|ref|YP_005031727.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
gi|356877495|emb|CCC98335.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
Length = 485
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 130/321 (40%), Gaps = 54/321 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIES 184
+VWFR+DLR+ DN +L+ A + V+PVY + D P AS +L S
Sbjct: 9 LVWFRSDLRLADNPALSAAAEDGAPVIPVYI-------REKDAHDPWLPGAASRWWLHGS 61
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L K L GS LV+R G P +VL LA+ GAD V +R + + ++ +
Sbjct: 62 LERLGKALAKLGSPLVLRSGDPASVLAALAEETGADTVLCNRRAGPTAIARDRRVGERLS 121
Query: 245 DEGIEVKYFWGSTLYH------LDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQL 297
G+ V + LY D PF++ + F + + + E + A +L
Sbjct: 122 ARGVTVHPHNAALLYEPGTIRTKSDTPFRV------FTPFWKALLSMPEPPRPTRAPGKL 175
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF----AAE 353
+P SL D L SA GG GE A +RL F A
Sbjct: 176 T-----PPAKPVSSESLKDWCLLPSAPDWAGG--LRERWTPGEEAARERLADFLDGPVAA 228
Query: 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 413
Y A+ + + DG + +SP LA G + PR ++ + A
Sbjct: 229 YPAERDRPDHDG----------TSAMSPHLAFGEIGPRQIWHAARHAAD----------- 267
Query: 414 ESGSSGAGSNWLMFELLWRDF 434
+ AG+ + EL WR+F
Sbjct: 268 QRHELAAGAEAFLRELGWREF 288
>gi|424914362|ref|ZP_18337726.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850538|gb|EJB03059.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 507
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 21/283 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFR DLR+ DN++LN A+ ++P+Y +P +++G G +A +L S+
Sbjct: 34 ILWFRRDLRLDDNQALNAAHLSGRPIIPLYINEP-----AAAGTGPLGAAQAWWLHHSLE 88
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L R LV+ G VL + K GA+AV+ +R + + I+ ++ +
Sbjct: 89 ALDRSLHERQGGLVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQ 148
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
IE + F G L+ L G Y F ++G E +EA +L+ R
Sbjct: 149 AIEARSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLAAQRPA 208
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 365
E LL + + P GE A +RL F E + + K N+D
Sbjct: 209 SETLKSWKLLPTKPDWAKDFTDLWTP-------GEQGARERLSAF-VEDELKGYKENRD- 259
Query: 366 NHDSIYGAN-FSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
Y A + +SP LA+G +SP ++D + + + AA
Sbjct: 260 -----YPAKPATSMLSPHLALGEISPARIWDATRGLSNRVPAA 297
>gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
Length = 493
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 54/336 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRASFLIE 183
SI W R DLR DN L A+ S S++ VY DP+ D +++S + FL E
Sbjct: 6 SIFWHRRDLRFGDNIGLFEASKNSKSLIGVYVLDPKLLDLNRTTS------EAKNWFLGE 59
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ +L+KN + RGS L++ G P ++ +LA+ + A+ +Y + + E+ +++I +
Sbjct: 60 SLIELQKNWEIRGSRLLILNGDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKL 119
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN-------YGGF-REKVKGVEIRK------ 289
E +V F LD L + TN YG F R+ + + I K
Sbjct: 120 SKEKRKVYTF-------LDQLIVNPSNIKTNNDEPYKVYGPFYRKWIDLINITKSSENNL 172
Query: 290 --TIEALDQLKGLPSR--GDVEPGDIPSLL---DLGLSQSAAMSQGGKPAANSMKGGETE 342
T E QL GL R ++ D+ + + + ++++ K K GE+E
Sbjct: 173 IQTSETAKQLTGLNERELSSIKNSDLNYCITNKSKSIYELLSLNRFNKTNLCPCKPGESE 232
Query: 343 ALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD--ELKKT 400
++++L F +D I + +S L++G +S R +++ ++ K
Sbjct: 233 SIKQLNSFIHSGVINSYNKARD-----IPSLENTSHLSAALSLGTISCRVVWNGAQVSKN 287
Query: 401 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
AT D E + + W+ EL WR+F++
Sbjct: 288 AT---------DDEYKINSIDT-WIK-ELAWREFYQ 312
>gi|424813932|ref|ZP_18239110.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339757548|gb|EGQ42805.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 471
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 131/310 (42%), Gaps = 47/310 (15%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
R LR HDN +L A+ E V+P+Y D + ++ G+ R F +S+ +L
Sbjct: 7 IRRSLREHDNTALVKASEEHDEVVPLYVVDDSYFEQAELGYP-----RVKFWHDSLKELE 61
Query: 190 KNL-QARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
++L + G LVVR G P + + + ADAVY +R+ K ++K+E ++ +
Sbjct: 62 QDLSETDGKQLVVRNGDPAEEIQRVVEETEADAVYHNRDYRPYSKKRDQKVEDEIE---V 118
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYG--GFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
VK F D + F+ E+ TN G + K + Q S ++
Sbjct: 119 PVKSF-------KDIVMFEKEEILTNSGTPYKVYSYYKKKWFKNDKRRPQKVKDYSTPEL 171
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
E +IPS+ +LG + MS +GG LQR+K+F + KD +
Sbjct: 172 ESVEIPSVSELGFEKPEDMS--------VWEGGRENGLQRMKQFK--------QNIKDYD 215
Query: 367 HDSIYGANFSC-KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425
Y S K+SP L G +S R +F E ++ E S G
Sbjct: 216 QARDYAWRDSTSKLSPHLKFGTVSIREVFWEAERMK------------EDDSDSEGIETW 263
Query: 426 MFELLWRDFF 435
EL WRD++
Sbjct: 264 QEELAWRDYY 273
>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260, partial [Chlorella
variabilis]
Length = 491
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 138/328 (42%), Gaps = 51/328 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFR LR+HDN +L A + + P++ DP + KS DK G R FL+ES+
Sbjct: 1 SIIWFRKGLRLHDNPALLAAAAGADHLCPIFILDPW-FLKS----DKIGVNRIQFLLESL 55
Query: 186 SDLRKNLQARGSDLVVRVGKPETV--LVELAKAIGADAVYAHREVS--HDEVKSEEKIEA 241
+DL + +ARGS L+V G+ E A GA + + HD ++ +
Sbjct: 56 TDLDASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCFEHDTEPYAKRRDV 115
Query: 242 AMKD----EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALD- 295
A++ G+EV TLY L + G P F + V G +
Sbjct: 116 AVRQLAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKLVDGGGCAAGYRCIAA 175
Query: 296 ----QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA 351
Q L S +PSL D+G + G P KGGE+ AL R+ +
Sbjct: 176 PSWPQAAALVSSSVA----VPSLTDIGYPPT-----GTTP----FKGGESAALARMADYL 222
Query: 352 AE----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 407
++ + PKGN + + + +SP+L GCLSPR +L++
Sbjct: 223 SDKGWVCAFEKPKGNP-----AAFVRPSTTVLSPYLKFGCLSPRLFHAKLQQIYAE---- 273
Query: 408 SKWNDGESGSSGAGSNWLMFELLWRDFF 435
+G L +LLWR+FF
Sbjct: 274 ------RNGMHTQPPVSLRGQLLWREFF 295
>gi|301345220|ref|ZP_07225961.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB056]
gi|301596996|ref|ZP_07242004.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB059]
gi|417573727|ref|ZP_12224581.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Canada BC-5]
gi|421802050|ref|ZP_16238004.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Canada BC1]
gi|400209295|gb|EJO40265.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Canada BC-5]
gi|410404438|gb|EKP56505.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Canada BC1]
Length = 480
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 134/317 (42%), Gaps = 31/317 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++WFR DLR+HD+ +L A+ + S L + P + + + P + SF + +
Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS-LGLVILSPEQWKQHAD-----APIKISFYLRQL 59
Query: 186 SDLRKNLQARGSDLVVRV----GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+K L A LV++V + T + + +K + VYA+ E+ +E+K ++ ++
Sbjct: 60 RTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQD 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ G E+ F T++ L + + + + F+ K + L Q +P
Sbjct: 120 YLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFK---KACYTKLDTSGLSQCYPVP 176
Query: 302 SRGDVEPGDIPS--LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
++ + P D +DL + S K + GE AL++L +F E
Sbjct: 177 NKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQF-IEQSVCHY 235
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K +D H + K+SP+L +G LS R L + G
Sbjct: 236 KVERDFPH-----IQATSKLSPYLNIGILSIRQCLQALFRN----------QHGNFHLVN 280
Query: 420 AGSNWLMFELLWRDFFR 436
G + ELLWR+F++
Sbjct: 281 EGQQTWLDELLWREFYQ 297
>gi|421789719|ref|ZP_16225967.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
gi|410397859|gb|EKP50098.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
Length = 480
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 31/317 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++WFR DLR+HD+ +L A+ + S L + P + + + P + SF + +
Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS-LGLVILSPEQWKQHAD-----APIKISFYLRQL 59
Query: 186 SDLRKNLQARGSDLVVRV----GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+K L A LV++V + + + +K + VYA+ E+ +E+K ++ ++
Sbjct: 60 RTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQD 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ G E+ F T++ L + + + + F+ K + L Q +P
Sbjct: 120 YLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFK---KACYTKLDTSGLSQCYPVP 176
Query: 302 SRGDVEPGDIPS--LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
++ + P D +DL + S K + GE AL++L +F E
Sbjct: 177 NKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCH-Y 235
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K +D H + K+SP+L MG LS R L + G
Sbjct: 236 KVERDFPH-----IQATSKLSPYLNMGILSIRQCLQALFRN----------QHGNFHLVT 280
Query: 420 AGSNWLMFELLWRDFFR 436
G + ELLWR+F++
Sbjct: 281 EGQQTWLDELLWREFYQ 297
>gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 473
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 133/316 (42%), Gaps = 37/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR+ DN +L A V ++ P + + K P R FL+ V
Sbjct: 3 LIWFRNDLRLADNPALRHACAGDEPVAALFILSPSQWRQH-----KLAPIRQRFLLAQVD 57
Query: 187 DLRKNLQARGSDL-VVRVGKPETV---LVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L + L A G L ++RV V L EL + +G +YA++ + DE++ ++ + AA
Sbjct: 58 VLGRELAALGIPLHLLRVETFSEVPAALAELCRELGVTQLYANQAIEIDELRRDQAVSAA 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++ + + G + + GEM + F R ++ALD+ +
Sbjct: 118 LAEQTVGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFS--------RAWLKALDEDGFVIH 169
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
R G+ L + G A GE EA +RL F QA G
Sbjct: 170 RPPAPRGEPLPWQPLAERHFVDAALGELTADPRWPVGEAEASRRLNDFLE--QAVLDYGE 227
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA-- 420
+ +I G + +SP+LA G +SPR L++ G S A
Sbjct: 228 TR-DFPAIAGTSV---LSPYLAAGIISPRQCVAALQQRL-----------GYRPQSKAQP 272
Query: 421 GSNWLMFELLWRDFFR 436
G WL EL+WR+F+R
Sbjct: 273 GFVWLN-ELIWREFYR 287
>gi|356529875|ref|XP_003533512.1| PREDICTED: uncharacterized protein LOC100813721 [Glycine max]
Length = 654
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 37/213 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I+WF++DLR D+ +L A + S++P+Y FD R + S D+T ++ +V
Sbjct: 7 AILWFKHDLRTDDHPAL-LAASAFPSLVPIYVFDHRILSRFS---DET----LELVLLAV 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSH------DEVKSEEKI 239
DLRK+L+ RGSDLV+R G E V+ +LA + A V+A +EV + D VK +++
Sbjct: 59 EDLRKSLKDRGSDLVIRFGNAENVIQQLATEVKATCVFAEQEVEYELRFIIDVVK--QRL 116
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE--------------KVKGV 285
++ +G W + Y + DL +P +Y F++ K+ G
Sbjct: 117 KSVSVPQGSPRIELWRTPFYDIKDLE----NLPASYDEFKKLRLSVTTPLQLSVSKLPGA 172
Query: 286 EIR---KTIEALDQLKGLPSRGDVEPGDIPSLL 315
EI + + D +KG + + G+ SL+
Sbjct: 173 EIELDWGVLPSYDDIKGFLTSNQQKSGEKWSLM 205
>gi|428301495|ref|YP_007139801.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
gi|428238039|gb|AFZ03829.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
Length = 476
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 45/321 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L TA + + V+ ++C DP D P R +++I +
Sbjct: 6 LFWHRRDLRIADNTGLATARDRTHRVIGLFCLDPNILNP-----DHVAPVRVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS L++ G+P V+ LA A+GA AV+ + +V K + + A+K++
Sbjct: 61 ALQQRYAEVGSQLLIVQGEPTQVIPTLATALGAKAVFWNWDVEPYSQKRDHTVIDALKEQ 120
Query: 247 GIEVKYF---WGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS- 302
GI+ Y W L+ D++ T Y F + + + L + GL S
Sbjct: 121 GID--YLAPNWDQLLHTPDEIRTGSNSTYTVYSPFWKNWYSKPKAEPVATLANVAGLTSA 178
Query: 303 -------RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
G +E +PS DLG + + GE A RL++F Y+
Sbjct: 179 QMEIARKNGVIE---LPSAKDLGFVWDGDL---------IIAPGEATAQSRLEEFC--YR 224
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415
A +D N +I G + ++S L G + R ++ + T ++I + S
Sbjct: 225 A-INNYQEDRNFPAIDG---TSQLSAALKFGVIGIRHVW---QATLSAIE------NSRS 271
Query: 416 GSSGAGSNWLMFELLWRDFFR 436
+ EL WR+F++
Sbjct: 272 DEARDSIRTYQQELAWREFYQ 292
>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
Length = 671
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 133/324 (41%), Gaps = 43/324 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 23 KHTVHWFRKGLRLHDNPSLKEGLAGASTFRCVFVLDPWFAGSTNVGINK-----WRFLLQ 77
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEAA 242
+ DL +L+ S L V G+P L +L K G D + V+ + I A
Sbjct: 78 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTDLTFEEDPEPFGRVR-DHNISAL 136
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVE-----IRKTIEALDQ 296
K+ GI V TLY LD++ + G+ P Y F+ V G++ A
Sbjct: 137 CKELGISVVQRVSHTLYRLDEIIERNSGKPPLTYHQFQNVVAGMDPPEPPAPTVTAACIG 196
Query: 297 LKGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355
P + D + +P+L +LG + + GGE+EAL RL++
Sbjct: 197 SAYTPLKDDHDDHYGVPTLEELGFDTESLLPP-------VWVGGESEALARLERHLERKA 249
Query: 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASKWN 411
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 250 WVASFGRPKMTPQSLLPSQ--TGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS--- 304
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
L +LLWR+FF
Sbjct: 305 -------------LHGQLLWREFF 315
>gi|390355184|ref|XP_785873.3| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 754
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 135/323 (41%), Gaps = 46/323 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L + +Y DP G S G + R FL+E +
Sbjct: 21 VHWFRKGLRLHDNPALKEGLKSASGFRCIYILDPWFAGSCSKGVN-----RWRFLLECLE 75
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL +L+ S L + G+P VL L K + + ++ I ++
Sbjct: 76 DLDSSLRKLNSRLFLIRGQPADVLPRLFKEWKVTQLSFEEDSEPFGRTRDKAISTLAQEA 135
Query: 247 GIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVK--GVEIR--KTIEALDQLKGLP 301
G++V TLY + L E P Y F++ + G+ I + +EA D ++GL
Sbjct: 136 GVKVISKVSHTLYDPQEILALNNNEPPLTYKRFQDIISLMGIPIYPAEALEAED-VEGLD 194
Query: 302 SRGDVEPGD---IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
+ D D IP+L +LG GGETEA QRL K + A
Sbjct: 195 TFIDPNHEDKYGIPTLEELGFDPEDV-------PPPMWIGGETEAKQRLDRHLERKAWVA 247
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
++ P+ + S G +SP+L GCLSPR+ + +L + + + N
Sbjct: 248 NFER--PRMSPASLMASPAG------LSPYLRFGCLSPRTFYWKLTELYQKVRKTT--NT 297
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 298 PLS---------LHGQLLWREFF 311
>gi|88811682|ref|ZP_01126936.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Nitrococcus mobilis Nb-231]
gi|88791073|gb|EAR22186.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Nitrococcus mobilis Nb-231]
Length = 479
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 140/316 (44%), Gaps = 43/316 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
R + WFR DLR+ D+ L V V+PV+ DP+ ++ + G ASF
Sbjct: 4 RTPVLFWFRRDLRLADHPGLVACQAARVPVIPVFILDPQTEALGAAAKWRLGLAIASF-- 61
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
R+ LQA GSDL++R G + L+EL + GA V+ R + D ++ +++++ A
Sbjct: 62 ------RERLQAIGSDLILRRGPAKETLLELLEETGACEVHWSRNYTPDAIERDQEVKTA 115
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE---ALDQLKG 299
+K G G TL P+ + +++ FR +TIE + +++
Sbjct: 116 LKRAGRHALSHPGHTLIE----PWAVSPAASDH--FRVYSPYWRAFRTIEIAPVVPEIEA 169
Query: 300 LPSRGDVEPGDIPSLLDL-GLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
LP+ P P +L G AAM++G + A GE AL+R F E P
Sbjct: 170 LPA-----PALWPRSDNLAGWRLDAAMNRGAEVVARYACVGEQAALERFAAFLDE----P 220
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
++G D + A S +S L G +SPR+++ + + D E G
Sbjct: 221 WSAYRNGR-DRLDLAATSL-LSENLTYGEISPRTIWHGVCASG---------GDQEQGGE 269
Query: 419 GAGSNWLMFELLWRDF 434
+ EL+WR+F
Sbjct: 270 T-----FLKELVWREF 280
>gi|407477769|ref|YP_006791646.1| Cryptochrome DASH [Exiguobacterium antarcticum B7]
gi|407061848|gb|AFS71038.1| Cryptochrome DASH [Exiguobacterium antarcticum B7]
Length = 400
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 129/313 (41%), Gaps = 58/313 (18%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A IVW+R DLRV D+E+L+ A +E +V ++ + G +F E+
Sbjct: 2 AGIVWYRKDLRVDDHEALSRACSEQQTVRALFI---------QREIETRGHQHVTFERET 52
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEAAM 243
+ LR +L G +L + G + +L++ I D +Y HR E + E+++
Sbjct: 53 LQSLRDHLGQLGIELTILQGG---AMEQLSRFIEPEDVLYFHRMTGFYEERLEQEVLRQF 109
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
E + TL+ +D+ E+ + FR++V+ S
Sbjct: 110 TACMYETQ-----TLHLREDIG--SDELKRVFTAFRKRVE-----------------ESG 145
Query: 304 GDVEPGDIPSLLDLGLSQSA-AMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
EP D P + Q A AM + GGE RL EY +P
Sbjct: 146 RFAEPIDAPGEVRYVEPQEARAMDH--PHTSFPFAGGEAAGRARL----TEYLERPVFTY 199
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K+ + + + S K+S WLA G LSPR + EL++T A +
Sbjct: 200 KETRNG--FDRDDSSKLSAWLANGSLSPRRVMAELQRTERLHGA------------NEST 245
Query: 423 NWLMFELLWRDFF 435
WL FELLWRDFF
Sbjct: 246 YWLYFELLWRDFF 258
>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
gi|108883518|gb|EAT47743.1| AAEL001175-PA [Aedes aegypti]
Length = 553
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 139/334 (41%), Gaps = 54/334 (16%)
Query: 123 RRASIVWFRNDLRVHDNESLNTA------NNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
++ + WFR LR+HDN +L A + + ++ PV+ DP + + + GP
Sbjct: 4 QQTVVHWFRKGLRLHDNPALLAAIRRCRDSPQQYALRPVFILDP-----AIVQWLRVGPN 58
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R FL ++++DL +NL+ S L V G P V +L + + ++ +K +
Sbjct: 59 RWRFLQQTLADLDRNLRKINSRLYVVRGNPVDVFPKLFQEWNVSFLTFEHDIEPYSIKRD 118
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKTIEALD 295
+E K G++++ T+Y D L G P Y + ++I E +
Sbjct: 119 ATVEEQAKKHGVKIQIEKSLTIYDPDAILKMNAGRPPLTYQKYGSLASTLKIP---EPVA 175
Query: 296 QLKGLPS----------RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQ 345
K +PS R D P L++LG+ + GGETEAL+
Sbjct: 176 TPKEIPSDCVPKQDSNERKRANCYDPPLLVELGVKEEDL-------GECKFPGGETEALR 228
Query: 346 RL----KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTA 401
RL K+ + + P + + S + +SP++ GCLS R EL+
Sbjct: 229 RLEDHMKRKSWVCSFEKPNTSPNSLEPS------TTVLSPYVKFGCLSARLFMRELQTVI 282
Query: 402 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
G+ S S L+ +L+WR+F+
Sbjct: 283 K----------GQKHSQPPVS--LIGQLMWREFY 304
>gi|224004440|ref|XP_002295871.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209585903|gb|ACI64588.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 571
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 149/395 (37%), Gaps = 107/395 (27%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD-------------KT 173
++W R DLR+ DNE + A + ++ FD DY S+G
Sbjct: 6 LIWHRRDLRLADNELYSNA----AKIYSLFVFDTADYTPRSTGISAGGDRGDDYVYNVNN 61
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI---------------- 217
GP+ L+E+V LR NL+ G DL+VR G P ++ LAK +
Sbjct: 62 GPHFTRRLLEAVHSLRNNLRDLGGDLIVRHGNPLEIIPSLAKELQVEEVAWSEVPGYYEW 121
Query: 218 ------------GADAVYAHRE-------------------------VSHDEVKSEEKIE 240
GAD YAHR ++ + K +++
Sbjct: 122 VQSEKLKQILMDGADEGYAHRRKICTSVTTTLMHPDDLPKDQPTWERLARPKEKRKKQKP 181
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGVE-IRKTIEALDQLK 298
AA E +Y ++ + D+ P + MP+ G FR + V IR+ E +
Sbjct: 182 AATASVAHEERYTTHTSFNSIVDISPPRFVGMPSIMGDFRRVARTVAPIRELSEPIHSQC 241
Query: 299 GLPSRGDVEPGDIPSL-------LD-----LGLSQSA----AMSQGGKPAANSMKGGETE 342
D+ IP+L LD LGLS+ S P + E E
Sbjct: 242 IANDVSDINTDGIPTLEELTQPLLDSQHPILGLSKELIHKLVQSARALPREYNSNVEEIE 301
Query: 343 ALQRLKKFAAEYQAQPPKGNKD--GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKT 400
LQ LK F + A + D G+H S K+S LA+G LSPR ++ +K
Sbjct: 302 HLQ-LKLFVRHHAATAERNLCDVSGSH--------SSKLSVPLALGTLSPRQIYRYVKSE 352
Query: 401 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ G + +S G W++ L RD+F
Sbjct: 353 QEQL--------GNTTTSPDGIAWIINHLEIRDYF 379
>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
Length = 486
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SIVWFR DLRV DN +L A E V+PV+ +D +S G + +L S+
Sbjct: 10 SIVWFRQDLRVADNAALYHAAQEG-PVIPVFIWDDAAPLTNSQAIGAAGKW---WLHHSL 65
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ LR+ L DLVV G P TVL ELA A+AV +R ++ ++KI+ +++
Sbjct: 66 TALREQL----GDLVVLRGDPATVLQELALETKAEAVRWNRAYDEYGIERDKKIKTELRE 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
G+ VK F G+ L+ D+ G Y + VK + + D+++
Sbjct: 122 SGLMVKSFKGNVLHEPWDIKTGSGSSYKVYSHYWRAVKARGVAAPLPVPDKIE 174
>gi|398914031|ref|ZP_10656755.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM49]
gi|398179240|gb|EJM66856.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM49]
Length = 480
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 135/324 (41%), Gaps = 54/324 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR++DN +L+ A V VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLNDNTALSAAAARGPCV-AVYLLSPEQWLEHDDA-----PCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R TVL+ L + DA+Y + E E + + +
Sbjct: 57 ELSRELGQLNIPLLIRQAPRWDDAPTVLLNLCRQWQVDALYLNEEYGIHESRRDAAVART 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ EGIEV+ + LD L F+ G + T G + + + + V + +L L
Sbjct: 117 LRAEGIEVRRY-------LDQLLFQPGSVLTRSGTYFQVFSQFRKVCYERLHHSLPSLVR 169
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA----A 352
P + ++ IPS +D + G + GE +A RL F+
Sbjct: 170 APQKQAPLNIASDAIPSSVD-------GFATPGDNLRSLWPAGEAQARDRLDSFSDAQID 222
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
YQ++ K G + ++S +LA G +S R + AA N
Sbjct: 223 HYQSERDFPAKPG----------TSQLSAYLAAGVISARQ----------CLRAALHSNQ 262
Query: 413 GESGSSGAGSNWLMFELLWRDFFR 436
GE S G+ + ELLWR+F++
Sbjct: 263 GEFESGNTGAVTWINELLWREFYK 286
>gi|417555402|ref|ZP_12206471.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-81]
gi|417562323|ref|ZP_12213202.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC137]
gi|421199029|ref|ZP_15656194.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC109]
gi|421454809|ref|ZP_15904156.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-123]
gi|421631891|ref|ZP_16072554.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-13]
gi|421806039|ref|ZP_16241912.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-694]
gi|395524905|gb|EJG12994.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC137]
gi|395565925|gb|EJG27572.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC109]
gi|400212599|gb|EJO43558.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-123]
gi|400391819|gb|EJP58866.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-81]
gi|408710437|gb|EKL55663.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-13]
gi|410407513|gb|EKP59497.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-694]
Length = 480
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 134/317 (42%), Gaps = 31/317 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++WFR DLR+HD+ +L A+ + S L + P + + + P + SF + +
Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS-LGLVILSPEQWKQHAD-----APIKISFYLRQL 59
Query: 186 SDLRKNLQARGSDLVVRV----GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+K L A LV++V + T + + +K + VYA+ E+ +E+K ++ ++
Sbjct: 60 RTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQD 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ G E+ F T++ L + + + + F+ K + L Q +P
Sbjct: 120 YLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFK---KACYTKLDTSGLPQCYPVP 176
Query: 302 SRGDVEPGDIPS--LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
++ + P D +DL + S K + GE AL++L +F E
Sbjct: 177 NKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQF-IEQSVCHY 235
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K +D H + K+SP+L +G LS R L + G
Sbjct: 236 KVERDFPH-----IQATSKLSPYLNIGILSIRQCLQALFRN----------QHGNFHLVN 280
Query: 420 AGSNWLMFELLWRDFFR 436
G + ELLWR+F++
Sbjct: 281 EGQQTWLDELLWREFYQ 297
>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
Length = 433
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 23/210 (10%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + SI WFR DLR++DN +L A E++ VLP++ FD D R +F+
Sbjct: 1 MEKISIFWFRRDLRLYDNTALYYAIQENIPVLPLFIFDSEILDDLKDKSDA----RVNFI 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ ++++ L+ GS ++++ GKPE V L K AV+ +R+ ++ ++KI+
Sbjct: 57 HDQLTEINDQLKKIGSGVLIKHGKPEEVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDN 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK---------VKGVEIRKTIE 292
++ +GI F ++ D++ E + F+ K + EI T E
Sbjct: 117 ILQQKGIGFYDFKDHVIFEKDEILTGGNEPYKVFTPFKNKWLEKLESGHIHPYEIHLTAE 176
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQS 322
Q EP +IP+L ++G +S
Sbjct: 177 NFFQF---------EP-EIPTLDEIGFRES 196
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 12/218 (5%)
Query: 124 RASIVWFRNDLRVHDNESLNTA---NNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRA 178
+ ++VW R DLR+ DN +L+ A + VL ++ FDP D G + +
Sbjct: 18 QIALVWHRRDLRIDDNPALSEAIAQVGDQGKVLGLFIFDPDILDDGVTEGS-------KV 70
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
F++ + +L+ N + GSDL+ G+P T L LAKAI ++ +++V +K + +
Sbjct: 71 DFMLGCLRELQTNYRRLGSDLLFMYGEPITSLCSLAKAINTSHLFFNQDVEPFAIKRDRE 130
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
A+++ G++V+ F L D + + GE Y F + + ++A +L
Sbjct: 131 ATQALQEIGVKVQSFVDIGLIAPDAIATQAGEPYKVYTPFWRNWQSKPKPQPLDAPQKLT 190
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSM 336
GL S ++ +PSL +L + + G+ AA ++
Sbjct: 191 GLASYENLPVIPLPSLRELKFINDITLPESGESAALAL 228
>gi|423202670|ref|ZP_17189249.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
gi|404614866|gb|EKB11845.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
Length = 473
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 132/316 (41%), Gaps = 37/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+ DN +L A V ++ P + + K P R F++ V
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIISPTQWRQH-----KMAPIRQRFMLAQVD 57
Query: 187 DLRKNLQARGSDL-VVRV---GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L A G L ++RV + L +L + +G +YA++ + DE + + + AA
Sbjct: 58 ELGRELAALGIPLHLLRVETFAEAPAALADLCRELGVTQLYANQAIEIDEQRRDHAVTAA 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++ + + G + + G+M + F R ++ALD+ +
Sbjct: 118 LAEQAVSCHWLNGCCVLPPGRVLTGSGDMFKVFTPFS--------RAWLKALDEEGFVIH 169
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
R G+ L + G GE EAL+RL F QA G
Sbjct: 170 RAPTPRGEPLPWQPLAERAWVDEALGELTVDPHWPVGEAEALRRLNIFLE--QAVLDYGE 227
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA-- 420
+ +I G + +SP+LA G +SPR L++ G S A
Sbjct: 228 TR-DFPAIAGTSV---LSPYLAAGIISPRQCVAALQQRL-----------GYRPQSKAQP 272
Query: 421 GSNWLMFELLWRDFFR 436
G WL EL+WR+F+R
Sbjct: 273 GFVWLN-ELIWREFYR 287
>gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG]
Length = 455
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ASIV + +DLR+HD+ L A E+ V+P++ DP G GF RA+FL +
Sbjct: 2 KASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDP---GIKKVGFHAAN--RAAFLAD 56
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL L+ RG LVVR G P V+ EL + GA+ V+ VS +++ AA+
Sbjct: 57 CLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAAL 116
Query: 244 KDEGIEV 250
+ G E+
Sbjct: 117 EGTGAEL 123
>gi|215482677|ref|YP_002324873.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
AB307-0294]
gi|301511002|ref|ZP_07236239.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB058]
gi|421623198|ref|ZP_16064087.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC074]
gi|421643959|ref|ZP_16084447.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-235]
gi|421647372|ref|ZP_16087789.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-251]
gi|421660892|ref|ZP_16101074.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-83]
gi|421700586|ref|ZP_16140099.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-58]
gi|421794872|ref|ZP_16230963.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-21]
gi|213987651|gb|ACJ57950.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
AB307-0294]
gi|404569237|gb|EKA74324.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-58]
gi|408506634|gb|EKK08340.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-235]
gi|408516477|gb|EKK18050.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-251]
gi|408693807|gb|EKL39405.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC074]
gi|408703501|gb|EKL48896.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-83]
gi|410402809|gb|EKP54914.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-21]
Length = 480
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 134/317 (42%), Gaps = 31/317 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++WFR DLR+HD+ +L A+ + S L + P + + + P + SF + +
Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS-LGLVILSPEQWKQHAD-----APIKISFYLRQL 59
Query: 186 SDLRKNLQARGSDLVVRV----GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+K L A LV++V + T + + +K + VYA+ E+ +E+K ++ ++
Sbjct: 60 RTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQD 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ G E+ F T++ L + + + + F+ K + L Q +P
Sbjct: 120 YLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFK---KACYTKLDTSGLPQCYPVP 176
Query: 302 SRGDVEPGDIPS--LLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
++ + P D +DL + S K + GE AL++L +F E
Sbjct: 177 NKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQF-IEQSVCHY 235
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
K +D H + K+SP+L +G LS R L + G
Sbjct: 236 KVERDFPH-----IQATSKLSPYLNIGILSIRQCLQALFRN----------QHGNFHLVN 280
Query: 420 AGSNWLMFELLWRDFFR 436
G + ELLWR+F++
Sbjct: 281 EGQQTWLDELLWREFYQ 297
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,109,135,059
Number of Sequences: 23463169
Number of extensions: 299703328
Number of successful extensions: 659426
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 2153
Number of HSP's that attempted gapping in prelim test: 652499
Number of HSP's gapped (non-prelim): 4275
length of query: 436
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 290
effective length of database: 8,933,572,693
effective search space: 2590736080970
effective search space used: 2590736080970
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)