BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013801
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2
SV=2
Length = 447
Score = 565 bits (1456), Expect = e-160, Method: Compositional matrix adjust.
Identities = 299/432 (69%), Positives = 358/432 (82%), Gaps = 17/432 (3%)
Query: 5 KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPN 64
++NL NPE S EEQNPLA S P A+LSL+ + P++T F++ LF+H PN
Sbjct: 7 EENL-NPETKSAEEQNPLAIFHSSLPIASLSLT-----LFPSSTQFLK-----LFAHHPN 55
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRR 124
KVK+PTQAS+LTH+SLS+ S S+ISFKST++ANPLQSPLS+ P RP+DP++ AA+RR
Sbjct: 56 KVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRR 115
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIES
Sbjct: 116 AAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIES 175
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
VS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E KIE AMK
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK 235
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV+ +EIRKTI ALDQLK LPSRG
Sbjct: 236 EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSRG 295
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364
DVE GDIPSLLDLG+S + SQ GKP +M GGETEAL RLK FAA+ QA+ KGN+
Sbjct: 296 DVELGDIPSLLDLGISPTPRTSQEGKP---TMVGGETEALTRLKSFAADCQARLSKGNQK 352
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G ++S++GANFSCKISPWLAMG +SPRSMFDELKKT ++ + ++ +G + G NW
Sbjct: 353 GGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDT---GLNW 409
Query: 425 LMFELLWRDFFR 436
LM+ELLWRDFFR
Sbjct: 410 LMYELLWRDFFR 421
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 27/318 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
+SV DLR L+ GS L+VR GKPE V+ EL K +G+ + A H EV+ +E EEK++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ V+ FWGSTLYH DDLPF +G +P Y FR+ V+ +R + +Q+K
Sbjct: 125 ICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
PS +E G IP+ LG ++ + P +GGETEAL RLK + + A
Sbjct: 185 PPS--GLEEGPIPTFDSLGQTEPLDDCRSAFPC----RGGETEALARLKHYFWDTNAVAT 238
Query: 360 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 418
K ++G + G +FS K SPWLA+GC+SPR +++++KK +A
Sbjct: 239 YKETRNG----MIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA------------ 282
Query: 419 GAGSNWLMFELLWRDFFR 436
+ W++FELLWRD+F+
Sbjct: 283 NQSTYWVIFELLWRDYFK 300
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 224 bits (572), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 187/314 (59%), Gaps = 23/314 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VW+RNDLRVHD+E L +A +++ V+ +YCFDPR +GK+ GF+KTGP+RA FL+E
Sbjct: 4 KTVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLE 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV+DLR++L+ GSDL+VR G PE V+ L + AV+ H EV+ +E+ E ++AA+
Sbjct: 64 SVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ V+ FWG+TL H DDLPF + +P + FR++V + I + A +L
Sbjct: 124 APLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAPAKLP---P 180
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362
V+PG+IP L DLGL + A KGGET L RL+++ +Q K
Sbjct: 181 LPAVDPGEIPQLADLGLESPVTDER----AVLQFKGGETSGLARLEEYF--WQKSLLKSY 234
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
K + + GA++S K S WLA+GCLS R + ++++ T ND +
Sbjct: 235 KQ-TRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIK----ND--------ST 281
Query: 423 NWLMFELLWRDFFR 436
WL+FELLWRD+FR
Sbjct: 282 YWLIFELLWRDYFR 295
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 183/317 (57%), Gaps = 25/317 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE L+ A+ + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 6 RVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEA 241
ESV DLR L+ +GS+L++R GKPE V+ +L K +G AV H E + +E E ++
Sbjct: 66 ESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQ 125
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
A GI+ + FWGSTLYH +DLPF+ + +P Y FR+ V+ ++R T + D+LK
Sbjct: 126 ACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPDKLKP 185
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 359
LPS +E G +PS D + P + GGE++ALQRL+ + ++
Sbjct: 186 LPS--GLEEGSVPSHEDFDQQDPLTDPRTAFPCS----GGESQALQRLEHYF--WETNLV 237
Query: 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 419
KD + + G ++S K +PWLA+GC+SPR +++++ K +A
Sbjct: 238 ASYKD-TRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERTA------------N 284
Query: 420 AGSNWLMFELLWRDFFR 436
+ W++FELLWRD+FR
Sbjct: 285 QSTYWVIFELLWRDYFR 301
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 212 bits (539), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 181/315 (57%), Gaps = 31/315 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HD+E L+ A +++ VYC+DPR + ++ GF KTGP+R++FL +SV
Sbjct: 9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQ 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L ++LQ G+ L+V G PE V+ ++AK I A +Y HREV+ +E+ E + +
Sbjct: 69 NLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTIL 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV--KGVEIRKTIEALDQLKGLPSRG 304
GIE K +WGSTL H +DLPF + ++P + FR+ + K + IR A QL LPS
Sbjct: 129 GIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL--LPS-- 184
Query: 305 DVEPGDIPSL-LDLGLSQSAAMSQGG--KPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361
P++ L+L Q + + +GGET L RL+ + + K
Sbjct: 185 -------PNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYF--WHGDRLKD 235
Query: 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421
K+ + + GA++S K SPWLA+GCLSPR ++ E+K+ + S
Sbjct: 236 YKE-TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYE------------QERVSNDS 282
Query: 422 SNWLMFELLWRDFFR 436
++WL+FELLWRDFFR
Sbjct: 283 THWLIFELLWRDFFR 297
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 204 bits (520), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 180/316 (56%), Gaps = 27/316 (8%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 85 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 144
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 145 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 204
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 205 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 264
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
PS D GD+P+L LG+ + +++G + GGE+ + R+ F ++ K
Sbjct: 265 PSVDDW--GDVPTLEKLGV-EPQEVTRGMR-----FVGGESAGVGRV--FEYFWKKDLLK 314
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 315 VYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS----------- 362
Query: 421 GSNWLMFELLWRDFFR 436
+ W++FEL+WRD+FR
Sbjct: 363 -TYWVLFELIWRDYFR 377
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 202 bits (513), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 184/330 (55%), Gaps = 41/330 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+L A S ++LPVYC DPR +G + G KTG RA F+IE
Sbjct: 79 VAIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIE 138
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL++NL RG DL+++ GKPE ++ LAKA A VYAH+E +EVK E+ + +
Sbjct: 139 CLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNL 198
Query: 244 K------------DEG----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVE 286
+ D G +++ WGST+YH+DDLPF +P Y FR+ V+ +
Sbjct: 199 QKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSK 258
Query: 287 IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQR 346
+R + P GD G +P + +LGL Q +S+G + GGE+ AL R
Sbjct: 259 VRNCTKLPTSFGPPPEVGDW--GHVPQVSELGLQQE-KVSKG-----MNFVGGESAALGR 310
Query: 347 LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 406
+ + ++ K K+ + + GA++S K SPWLA G LSPR +++E+K+
Sbjct: 311 VHDYF--WKKDLLKVYKE-TRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYE----- 362
Query: 407 ASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ S + W++FEL+WRD+FR
Sbjct: 363 -------KERLSNDSTYWVLFELIWRDYFR 385
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 198 bits (503), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 26/314 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIE++
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
GI +G TL H D+LPF++ + P + FR+++ K E R +E ++ G LP
Sbjct: 123 HGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIRIHGTLPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA-EYQAQPPKGN 362
+V GDIP+L LGLS + N GG+ A QR++++ E + + K
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR----CLNQFTGGQNAAQQRMEEYIWNEDRLRVYKET 236
Query: 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 422
++G + N S K SPWLA GCLSPR + D +++ E +
Sbjct: 237 RNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRRYE------------EERVKNKST 280
Query: 423 NWLMFELLWRDFFR 436
W++FELLWRD+FR
Sbjct: 281 YWMIFELLWRDYFR 294
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 181/344 (52%), Gaps = 65/344 (18%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +VLPVYC DPR S+ GF KTG RA FLI
Sbjct: 85 VAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 144
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 145 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKG 204
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 205 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 261
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAA 333
++ LD++ G G +P+L LGLS + A
Sbjct: 262 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKA------EKG 307
Query: 334 NSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR
Sbjct: 308 MHFVGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLSPRY 363
Query: 393 MFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+ +E+K+ A ND + W++FEL+WRD+FR
Sbjct: 364 ICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFR 395
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 175/312 (56%), Gaps = 23/312 (7%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR+DLRV DN +L A + +V+PVY FDP Y +S G KTG +RA F ++V
Sbjct: 4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAV 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR +L+ RG DL+VR G+P TV+ ELA+ GADAVYA + + +E + + +A+ D
Sbjct: 64 ADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDD 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
GI ++ W TLYH DDLP ++ + +R++ + + + + +P+
Sbjct: 124 AGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPET--VPTPDG 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE-YQAQPPKGNKD 364
+ PG +P++ LG+S+ + A +GGE+ +R++ + E + K ++
Sbjct: 182 LTPGPVPTVESLGVSEPPTDDR----AVLEFEGGESAGKRRVESYIWEGDHLREYKTTRN 237
Query: 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424
G + GA++S K SPWLA GCLSPR + E+++ A + W
Sbjct: 238 G----LLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANED------------TYW 281
Query: 425 LMFELLWRDFFR 436
L+FEL WRDFF+
Sbjct: 282 LVFELAWRDFFQ 293
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 168/343 (48%), Gaps = 46/343 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
R ++WFRNDLR+ DN + A + V V+PVY FD + S G + G R
Sbjct: 3 RTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGR 62
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAHREVSHDEVKS 235
F +E V DL+ +L+A GSDL+VR GK V+ EL D + EV+ +E +
Sbjct: 63 GKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEM 122
Query: 236 EEKIEAAMKDEG------IEVKYFWGSTLYHLDDLPFK----LGEMPTNYGGFREKVKG- 284
+ +E A ++ ++ WGSTLYH+DD+PF L ++P + FR KV+
Sbjct: 123 DVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESK 182
Query: 285 VEIRKTIEA--LDQLKGLPSRGDVEPGD-IPSLLDLGLSQSAAMSQGGKPAANSM----- 336
++R I A ++L +P+ VE + +P DL + S K + +
Sbjct: 183 CKVRDVIPAPTANELGHVPA--SVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSV 240
Query: 337 ---KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 393
KGGE+ AL R+K + E + + G ++S K++PWLA+GC+SPR +
Sbjct: 241 LDFKGGESNALARVKYYLWESDRLATYFE---TRNGMLGGDYSTKLAPWLALGCVSPRHV 297
Query: 394 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
E+++ + + W++FEL+WRDFF+
Sbjct: 298 VSEIRRYES------------ERVENKSTYWVIFELIWRDFFK 328
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 146/315 (46%), Gaps = 38/315 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R + FRNDLRV DN +L A S +++ +CF+P G G +R +FL +
Sbjct: 15 RLGLFVFRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQ 74
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ LR L+ RG L+V G + +L EL DA++ + + E+++ +
Sbjct: 75 SLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGY-----YERLQLGL 129
Query: 244 KDEGIEVKYFW---GSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ F +TL+ +LPF+L ++P + FR+KV+ + +++ ++ L L
Sbjct: 130 LQQRFPFLPFHETPNNTLFSEQELPFELADLPETFSQFRKKVEPLSRNFSVQPVNALPSL 189
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
P + PG L+ + A++ +GGE AL L + + A K
Sbjct: 190 P-KNISYPGFKAETLN-------------ELASDDFEGGERAALTHLTSYFSGESAGTYK 235
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++ D + S K SPWLA GCLS R + L+ T GE+ S
Sbjct: 236 QTRNALDD----FSSSTKFSPWLAQGCLSVRQIMAALRAYETEF--------GENES--- 280
Query: 421 GSNWLMFELLWRDFF 435
S W+ FELLWR++F
Sbjct: 281 -SYWISFELLWREYF 294
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 148/336 (44%), Gaps = 39/336 (11%)
Query: 114 LDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSG 169
L+P A S++WFR LRVHDN +L A+ S + PV+ DP D S G
Sbjct: 14 LNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPG 73
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS 229
+ G R FL+ES+ DL +L+ GS L+V G+P VLV + + +
Sbjct: 74 SSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTD 133
Query: 230 HDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIR 288
+ K++ G+EV TL++ + K G+ P +Y F KV G
Sbjct: 134 PYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFL-KVAGEPSC 192
Query: 289 KTIEALDQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQ 345
E + LP GD+ ++PSL +LG +GGE+EAL+
Sbjct: 193 AKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADW------TPFRGGESEALK 246
Query: 346 RLKK------FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 399
RL K + A ++ PKG+ S + + +SP+L GCLS R + L+
Sbjct: 247 RLTKSISDKAWVANFEK--PKGDP-----SAFLKPATTVMSPYLKFGCLSSRYFYQCLQN 299
Query: 400 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ D + +S S L+ +LLWR+FF
Sbjct: 300 I---------YKDVKKHTSPPVS--LLGQLLWREFF 324
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 156/362 (43%), Gaps = 55/362 (15%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVS-----VLPVYCF----------------DPRD 162
+ I R +LR+ DN + +N +LPVY F +P
Sbjct: 5 KVVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHP 64
Query: 163 YGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVEL-----AKA 216
KS+ G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L AK
Sbjct: 65 APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKE 124
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP---FKLGEMPT 273
AV+ +E E+ + + GI+ K W Y + D L ++P
Sbjct: 125 CQVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLNDLPD 183
Query: 274 NYGGFREKVKGV--EIRKTIEALDQLKGLPSRGDVE-----------PGDIPSLLDLGLS 320
+ +R++++ + + RKT+ ++ LP+ D++ PG L+D +
Sbjct: 184 VFTTYRKQIEPLREKARKTLPVPEK-GALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVR 242
Query: 321 QSAAMSQG------GKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN 374
+ +++ +GGET A +R+ + K +++G + G +
Sbjct: 243 PVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNG----LLGPD 298
Query: 375 FSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
FS K+S +LA GC++ R + L K DG G+ + ELLWRD+
Sbjct: 299 FSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDY 358
Query: 435 FR 436
R
Sbjct: 359 MR 360
>sp|Q4I1Q6|CRYD_GIBZE Putative cryptochrome DASH OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_08852 PE=3
SV=1
Length = 678
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 141/349 (40%), Gaps = 57/349 (16%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDY----------------GKSS 167
+ R DLR DN L T+++ +LP+Y P KS
Sbjct: 8 VYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----ADA 221
G F + GP RA F E + D++KN + GS +++R+GK + VL L K++ D
Sbjct: 68 VGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--------------LPFK 267
V+ E S +E+ + + + EGI K W Y +D+ +
Sbjct: 128 VWMTEEPSKEELDDQTAVASVCSKEGIGFK-LWHDEKYFIDEKTQEPLRERPRPPLPRPQ 186
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ 327
G +P+ + I + ++L +EP P + D +
Sbjct: 187 AGSLPSFPSWIPPQQAPFRIPDDYDEFERLL-------LEPVKAPIISD-----PPQFPE 234
Query: 328 GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGC 387
G K +A+ KGGET A RL + ++G + G +S K+S +LAMG
Sbjct: 235 GAK-SAHPFKGGETPAWDRLYHLIKSGAMTTYQETRNG----LLGTEYSTKLSAFLAMGT 289
Query: 388 LSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
++ RS+ EL K + G G+ + FELLWRD+ R
Sbjct: 290 ITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMR 338
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
+ E +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 198 RAEIQENHDETYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 250
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 251 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 298
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 299 STPPLS-------LFGQLLWREFF 315
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 137/318 (43%), Gaps = 43/318 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYC---FDPRDYGKSSSGFDKTGPYRAS 179
++ + WF DLR+HDN L A++ ++ +YC P + + G R
Sbjct: 3 KKIGLYWFTFDLRLHDNSLLVDASSFLDELVCLYCRPSVTPFLHHFAQEV--TLGRARQK 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ S+ +L L G L P L + + +Y+ DE + I
Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLSVTHLYSDAMAGSDE----QSI 116
Query: 240 EAAMKDEGIEVKYFWGS--TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++DE + S +L+ LPF L ++P + FR+ V+G++I I+A +L
Sbjct: 117 LHKLQDEYPHLVIVQHSVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPSRL 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357
+P + +P+L +SA S GGE L +++ A
Sbjct: 177 PPMP-----KGAQLPTLSSFYFDESALFS-----------GGEWSGLAHCRRYFFSGLAS 220
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
K ++G + G +S K SPWLA+GC+SPR + LK+ + A ND
Sbjct: 221 SYKETRNG----LDGMAYSTKFSPWLALGCVSPRMIHAMLKQYEQTQGA----ND----- 267
Query: 418 SGAGSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 ---STYWIYFELLWREYF 282
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 141/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALVRLDKHLERKAWV 249
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 250 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYRKV----KRN 297
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 298 STPPLS-------LFGQLLWREFF 314
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 141/324 (43%), Gaps = 44/324 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K A+ +
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFA 351
R +++ +PSL +LG ++G PA +GGETEAL RL K +
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFP-----TEGLGPAV--WQGGETEALARLDKHLERKAWV 249
Query: 352 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411
A Y+ P+ N + S G +SP+L GCLS R + L + K N
Sbjct: 250 ANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRN 297
Query: 412 DGESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 298 STPPLS-------LFGQLLWREFF 314
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 136/315 (43%), Gaps = 37/315 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + G P
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETISLSAPM-------GYP 173
Query: 302 S-RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 360
+E G L+D+ +P ++ GGE L + + + K
Sbjct: 174 HVLPPIEQGWQLPLMDI----------VTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYK 223
Query: 361 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 420
++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 224 ETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND-------- 267
Query: 421 GSNWLMFELLWRDFF 435
+ W+ FELLWR++F
Sbjct: 268 STYWIFFELLWREYF 282
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 142/323 (43%), Gaps = 44/323 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A + S+ +Y DP S+ G + R FL++S+
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGIN-----RWRFLLQSL 68
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K G + + + + I K+
Sbjct: 69 EDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKE 128
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSR 303
G+EV TLY+LD + + P Y F+ + +E+ +K + ++ + +
Sbjct: 129 AGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188
Query: 304 GDVEPGD-----IPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KKFAA 352
D++ +PSL +LG + G PA +GGETEAL RL K + A
Sbjct: 189 VDIQENHDDVYGVPSLEELGFP-----TDGLAPAV--WQGGETEALARLDKHLERKAWVA 241
Query: 353 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 412
Y+ P+ N + S G +SP+L GCLS R + L + + K N
Sbjct: 242 NYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV----KRNS 289
Query: 413 GESGSSGAGSNWLMFELLWRDFF 435
S L +LLWR+FF
Sbjct: 290 TPPLS-------LYGQLLWREFF 305
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 142/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWSIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 QKCTTPVSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 142/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWNIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG G P+A GGETEAL RL K
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 42/319 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR++D+ +L A ++ ++ V+C D + + P R ++L+ +
Sbjct: 20 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQA-----EDMAPARVAYLLGCLQ 74
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ + Q GS+L+V P +L +LA +GA V + K + + A+++
Sbjct: 75 SLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRER 134
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL-PSRGD 305
G+ + W ++H ++ + G T Y F + + + L+GL P+ +
Sbjct: 135 GLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPAEKE 194
Query: 306 ----VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAA----EYQAQ 357
+EP IP L DLG + + GE A QRL F A EYQ
Sbjct: 195 KLAPLEPLAIPQLADLGFIWDQPL---------PLTPGEEAAEQRLDWFVAHGLEEYQ-- 243
Query: 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 417
++ N ++ G + ++S L G +SPR+++ T++ A W S
Sbjct: 244 -----QNRNFPALDG---TSQLSAALKFGVISPRTLWQ------TTLEA---WEQSRSEE 286
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ A EL WR+F++
Sbjct: 287 ARASIETWQQELAWREFYQ 305
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 146/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L+V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK----- 349
++ S E +PSL +LG + +S P GGETEAL RL++
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERR 228
Query: 350 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KRNSSPPLS-------LYGQLLWREFF 296
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 144/327 (44%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
++ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 141/325 (43%), Gaps = 48/325 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWNIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF---- 350
+ E +PSL +LG G P+A GGETEAL RL++
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTD------GLPSA-VWPGGETEALTRLERHLERK 228
Query: 351 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 410
A+ + P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 229 ASVANFERPRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKVKK 278
Query: 411 NDGESGSSGAGSNWLMFELLWRDFF 435
N S L +LLWR+FF
Sbjct: 279 NSSPPLS-------LYGQLLWREFF 296
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 52/327 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------K 348
+ S E +PSL +LG + +S P GGETEAL RL K
Sbjct: 176 GKCMTPLSDDHDEKYGVPSLEELGFD-TDGLSSAVWP------GGETEALTRLERHLERK 228
Query: 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 409 KWNDGESGSSGAGSNWLMFELLWRDFF 435
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP+ + P R ++L +
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSAD-----MAPARVAYLQGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS L++ G P+ ++ +LA+ + A+AVY ++++ + ++ AA+K
Sbjct: 61 ELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI W L+ D + G + YG F + + + +L D+
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELV------DL 174
Query: 307 EPGDIPSLLDLGLSQSAAMSQ------GGKPAANSMKGGETEALQRLKKFA 351
P + ++ L LS+ + Q GG P ++ GET A+ RL++F
Sbjct: 175 SPEQLTAIAPLLLSELPTLKQLGFDWDGGFP----VEPGETAAIARLQEFC 221
>sp|Q05380|YAT1_SYNP1 Uncharacterized 31.6 kDa protein in atpI 5'region OS=Synechococcus
sp. (strain PCC 6716) PE=4 SV=1
Length = 284
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 125/308 (40%), Gaps = 30/308 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + +V+ V+CFDP G D R ++L+ +
Sbjct: 7 LFWHRRDLRLADNLGLYAARQHTPTVVGVFCFDP----ALLQGQD-VAAVRVAYLLGCLQ 61
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ Q RG L++ G P V+ E+A + A AV+ H +V + + + A + D
Sbjct: 62 ALKEAYQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNDL 121
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI V W L+ + + G+ T Y F + + L + ++
Sbjct: 122 GIAVHRQWDQLLHPPSAVQTQQGQPYTVYTPFWRNWSALPKAAPVPPPPDFAPLEA-TEI 180
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
+PS DLG S + + GE A Q+L F+ + G
Sbjct: 181 ASIPLPSTHDLGFDWSGEL---------ILAPGEAAAAQQLAHFSQH------AIYEYGE 225
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
+ G + +SP L G + R+++ A S +A E+ +S W
Sbjct: 226 QRNYPGRPGTALLSPALKFGVIGIRTVW------AASEAALEHARSDEARAS--IRTWQQ 277
Query: 427 FELLWRDF 434
EL WR+F
Sbjct: 278 -ELAWREF 284
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 137/332 (41%), Gaps = 86/332 (25%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++V F +DLR+HDN L A ++ V+P++ RD +GFD P +FL + +
Sbjct: 4 AVVLFTSDLRLHDNPVLRAALRDADEVVPLFV---RDDAVHRAGFDAPNPL--AFLADCL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L L+ RG L+VR G+ T + +A+ GA V+ VS + E++I A+ D
Sbjct: 59 AALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALAD 118
Query: 246 EGIEVKYFWGSTLYHLDD------LPFKLGEMPTNYGG----------FR----EKVKGV 285
G E+ H+ D P ++ +PT GG FR E V+G
Sbjct: 119 SGREL---------HVHDAVVTALAPGRV--VPT--GGKDHFAVFTPYFRRWEAEGVRGT 165
Query: 286 EIR-KTIEALDQLKG--LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETE 342
+ +T+ D + LP R VE + S +++GG+ A
Sbjct: 166 QTAPRTVRVPDGVASDPLPDRDCVE------------NLSPGLARGGEEAG--------- 204
Query: 343 ALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT 402
+K + P +DG HD + G + + ++SP L G +S + ++
Sbjct: 205 -----RKLVTSWLNGPMADYEDG-HDDLAG-DATSRLSPHLHFGTVSAAELVHRARE--- 254
Query: 403 SISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
G G + +L WRDF
Sbjct: 255 --------------KGGLGGEAFVRQLAWRDF 272
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 138/326 (42%), Gaps = 42/326 (12%)
Query: 127 IVWFRNDLRVHDNESLN--TANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
+VWFR LRVHDN +L+ + + PV+ DPR D S G + G R F
Sbjct: 16 MVWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75
Query: 181 LIESVSDLRKNLQARGSDLVVRV----GKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
L+ES+SDL L+ GS L++ G + K + + + +
Sbjct: 76 LLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARD 135
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALD 295
+K+ GI+V TL+ ++ K G P Y F + G +E
Sbjct: 136 KKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSF-VAIAGEPPEPIMEEYS 194
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRL------KK 349
+L + G+ E +P + +LG +SQ + +GGETEAL+R+ K+
Sbjct: 195 ELPPVGDTGEYELLPVPRVEELGYGD---ISQED---LSLFRGGETEALKRMRESLHDKE 248
Query: 350 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 409
+ A+++ PKG+ S + + +SP+L GCLS R + ++ S +
Sbjct: 249 WVAKFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTN 301
Query: 410 WNDGESGSSGAGSNWLMFELLWRDFF 435
+G +LLWRDFF
Sbjct: 302 PPVSLTG-----------QLLWRDFF 316
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 139/339 (41%), Gaps = 53/339 (15%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNES----VSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+R+A + WF+ DLR+HDN SL A+ ++ V ++ +Y P D P R
Sbjct: 133 VRQAVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLR-----APIR 187
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPE----TVLVELAKAIGADAVYAHREVSHDEV 233
F++ ++ L+ +L+ G L V + T + EL K+ GA ++ E DE+
Sbjct: 188 VDFMLRTLEVLKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDEL 247
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG--------FREKVKGV 285
+ E K+ + EG + + ++ D G + + GG FR +K +
Sbjct: 248 RREAKL-VKLLAEGEKGEKMAADVVH--DTCVVMPGALQSGSGGQYAVYSPWFRAWIKHI 304
Query: 286 EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMK-------- 337
E E + L+ G PG +L + S + GK + K
Sbjct: 305 E-----ENPECLEIYEKPGPNPPGTKEKHENL-FACSIPEAPEGKRLRDDEKARYHSLWP 358
Query: 338 GGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL 397
GE EAL+RL+KF E K +I + +S A G LS R+
Sbjct: 359 AGEHEALKRLEKFCDEAIG------KYAERRNIPAMQGTSNLSVHFASGTLSARTAI--- 409
Query: 398 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436
+TA + K N G G W+ E+ WRDF++
Sbjct: 410 -RTARDRNNTKKLNGGNEGI----QRWIS-EVAWRDFYK 442
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 141/346 (40%), Gaps = 60/346 (17%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTA---NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
A R A+++WFR+ LR+HDN +L A ++ ++++PV+ FD G + G++ R
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYN-----R 56
Query: 178 ASFLIESVSDLRKNLQA----RGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
FL++S+ D+ LQA RG LV G+P + L + + + ++
Sbjct: 57 MRFLLDSLQDIDDQLQAATDGRGRLLVFE-GEPAYIFRRLHEQVRLHRICIEQDCEPIWN 115
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIE 292
+ +E I + ++ I+ TL+ + G + P Y F V
Sbjct: 116 ERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTV---------- 165
Query: 293 ALDQLKGLPSR--GDVEPGDIPSL-LDLGLSQSAAMSQG--------------GKPAANS 335
Q+ GLP R D D + LD +S + + G A +
Sbjct: 166 ---QIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKIN 222
Query: 336 MKGGETEAL----QRLK--KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 389
+GGET+AL +RLK + A E P HDS +S L GCLS
Sbjct: 223 WRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDS------PKSMSAHLRFGCLS 276
Query: 390 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
R + + ++ + G G + +L+WR++F
Sbjct: 277 VRRFYWSVHDLFKNVQLRA----CVRGVQMTGGAHITGQLIWREYF 318
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 141/303 (46%), Gaps = 32/303 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FL 181
+ +IVWFR DLR+ DN +L A +E SV PV+ + P + G+ G RAS ++
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEG-SVFPVFIWCPEEEGQFYPG-------RASRWWM 56
Query: 182 IESVSDLRKNLQARGSDL-VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+S++ L ++L+A GSDL +++ + +++ + GA V + + + ++
Sbjct: 57 KQSLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVK 116
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ + GI V+ + G LY ++ + G+ T++ + +K + I +++ + +
Sbjct: 117 EKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSI-ESVMLPPPWRLM 175
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPA----ANSMKGGETEALQRLKKFAAEYQA 356
P E S+ +LGL A KP+ + G + A + L +F +
Sbjct: 176 PITAAAEAIWACSIEELGLENEAE-----KPSNALLTRAWSPGWSNADKLLNEFIEKQLI 230
Query: 357 QPPKGNKD--GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
K +K GN S+ +SP+L G +S R +F + + I A K ++GE
Sbjct: 231 DYAKNSKKVVGNSTSL--------LSPYLHFGEISVRHVF-QCARMKQIIWARDKNSEGE 281
Query: 415 SGS 417
+
Sbjct: 282 ESA 284
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 141/341 (41%), Gaps = 61/341 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTA--------NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+I+WFR+ LR+HDN SL A ++E+V + P++ FD G G++ R
Sbjct: 5 NILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYN-----R 59
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
FL+ES++DL + + G L+V G TVL L + + + ++ + ++
Sbjct: 60 MKFLLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCEPIWKERDD 119
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIEALDQ 296
+ + + TL++ ++ G++ P Y F V I +
Sbjct: 120 AVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTV------NIIGDPPR 173
Query: 297 LKGLPSRGDVEPGDIPSLL--DLGLSQSA--------AMSQGGKPAANSMKGGETEALQ- 345
G P+ VE G +P+LL +L L Q + A GGET AL+
Sbjct: 174 PVGAPNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRALEA 233
Query: 346 ---RLKK----FAAEY----QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 394
RLK+ F Y QA+P I G S +S L GCLS R +
Sbjct: 234 LGARLKQEEEAFREGYYLPTQAKP----------EILGPATS--MSAALRFGCLSVRMFY 281
Query: 395 DELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ + + S++ G + + +L+WR++F
Sbjct: 282 WCVHDLFAKVQSNSQFK-------YPGGHHITGQLIWREYF 315
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 139/344 (40%), Gaps = 68/344 (19%)
Query: 126 SIVWFRNDLRVHDNESLNTA------NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
+I+WFR+ LR+HDN SL A +ESV + P++ FD G GF+ R
Sbjct: 5 NILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFN-----RMK 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL+ES++DL + L+ G L V G V+ L + + + ++ ++ I
Sbjct: 60 FLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCEPIWKARDDAI 119
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + ++ TL+ + G + P Y F V I +
Sbjct: 120 QNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTV------DIIGKPPRPV 173
Query: 299 GLPSRGDVEPGDIPSLL--DLGLSQSAAMS-------QGGKP--AANSMKGGETEALQ-- 345
PS VE G IPS+L ++ L Q +S G P + GGET+AL+
Sbjct: 174 AAPSFEFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECL 233
Query: 346 --RLKK----FAAEY----QAQPPKGNKDGNHDSIYGANFSC---KISPWLAMGCLSPRS 392
RLK+ F Y QA+P F +S L GCLS R
Sbjct: 234 GHRLKQEEEAFLGGYFLPTQAKP---------------EFLVPPTSMSAALRFGCLSVRM 278
Query: 393 MFDELKKTATSISAASKW-NDGESGSSGAGSNWLMFELLWRDFF 435
+ + + A +++ N G +G +L+WR++F
Sbjct: 279 FYWCVHDLYEKVQANNQYRNPGGQHITG--------QLIWREYF 314
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 137/343 (39%), Gaps = 58/343 (16%)
Query: 123 RRASIVWFRNDLRVHDNESLNTA---NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
R A+++WFR+ LR+HDN +L A ++ + ++PV+ FD G S G++ R
Sbjct: 4 RGANVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYN-----RMR 58
Query: 180 FLIESVSDLRKNLQA----RGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
FL++S+ DL + LQ+ RG L V G+P + L + + + A + +
Sbjct: 59 FLLDSLQDLDEQLQSATEGRGR-LFVFEGEPTLIFRRLHEQVRLHKICAELDCEPIWNER 117
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGV--------- 285
+E ++ GIE TL+ + G + P Y F V+ +
Sbjct: 118 DESARLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQIIGVPPRPAID 177
Query: 286 -------------EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPA 332
E+R+ + DQ+ P ++ ++ G A
Sbjct: 178 AHINDATFIQLAPELRQHLGCFDQVPN-PEHFNIYSDNM-----------------GFLA 219
Query: 333 ANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRS 392
+ +GGET+AL L++ + +G N + +S L GCLS R
Sbjct: 220 KINWRGGETQALALLEERLKVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRR 279
Query: 393 MFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 435
+ + ++ A+ G G + +L+WR++F
Sbjct: 280 FYWSVHDLFENVQLAA----CVRGVQIEGGAHITGQLIWREYF 318
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 123/319 (38%), Gaps = 41/319 (12%)
Query: 127 IVWFRNDLRVHDNESLNTA---------NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+ W R DLR DN L A ++ V V+CFD P R
Sbjct: 3 LFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFD-------DEVLAHAAPPR 55
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
+F++++++ LR+ + GSDL+VR G P VL +A + A V + + S +
Sbjct: 56 VAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRVVWNHDYSGLATDRDA 115
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+ A+ G+ F + + ++ G+ + Y F K + E +
Sbjct: 116 GVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEPA 175
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQ-SAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356
+ +PS+ +LG ++ AA+ G AA S+ L F
Sbjct: 176 DLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSL----------LDAFRESGDI 225
Query: 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416
+ +D H+ + ++SP L G + R++++ + + D E
Sbjct: 226 YRYEDRRDYPHEEP-----TSRLSPHLKFGTIGIRTVYEAARAAKSDAD-----TDDERE 275
Query: 417 SSGAGSNWLMFELLWRDFF 435
+ A + +L WR+F+
Sbjct: 276 NVAA----FIGQLAWREFY 290
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 131/319 (41%), Gaps = 52/319 (16%)
Query: 128 VWFRNDLRVHDNESLNTA----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
VWFR D R+HD+ +L A L + DP K++S P + +
Sbjct: 10 VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP----KTAS----VEPVHHDYFFQ 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-GADAVYAHREVSHDEVKSEEKIEAA 242
+V ++ L+ G DL + G E L +L +A DAVYA+ + D +E E
Sbjct: 62 TVMQFKQMLKTNGGDLYIITGTIEGALSKLLQAFPEIDAVYANDDRVGDGRLRDEAAEHF 121
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEAL---DQLK 298
+ + I F + L D + K G T Y F K + RK A+ D L
Sbjct: 122 LAKQSIPFYTFEDAYLTEPDQVLKKDG---TPYKVFTPYYKAWAKERKRTPAVIKRDVLL 178
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
G +G + +L + + K + + GE A++RL+ F + +
Sbjct: 179 GSVHKGTAPDREAETLFNNLIK---------KCSYDWSAIGEEHAIKRLQMFTKK-RLSG 228
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE-LKKTATSISAASKWNDGESGS 417
K N+D SI G + ++SP++ G +S RS++ L A S SA +
Sbjct: 229 YKANRD--FPSITG---TSRLSPYIKTGAVSSRSIYYHILNAEADSYSAET--------- 274
Query: 418 SGAGSNWLMFELLWRDFFR 436
+ EL WRDF+R
Sbjct: 275 -------FLKELAWRDFYR 286
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FL 181
+ +IVWFR DLR+ DN +L A +E SV PV+ + P + G+ G RAS ++
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEG-SVFPVFIWCPEEEGQFYPG-------RASRWWM 56
Query: 182 IESVSDLRKNLQARGSDL-VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+S++ LR++L+A GS+L +++ + +++ +A GA V + + + ++
Sbjct: 57 KQSLAHLRQSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVK 116
Query: 241 AAMKDEGIEVKYF 253
+ + GI V+ +
Sbjct: 117 EKLVERGISVQSY 129
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 135/322 (41%), Gaps = 55/322 (17%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFR DLR+HDN +L A N S VL +Y PR + + P +A + +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHN-----MSPRQAELINAQL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSH----DEVKSEEKIEA 241
+ L+ L +G L+ R VE+ K + A+ H ++ +E + ++E
Sbjct: 60 NGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVER 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
A+++ + + F S + + EM + F K +++ E + + P
Sbjct: 120 ALRN--VVCEGFDDSVILPPGAVMTGNHEMYKVFTPF----KNAWLKRLREGMPECVAAP 173
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKF----AAEY 354
S G +EP PS+ QS + E A+ +L++F A EY
Sbjct: 174 KVRSSGSIEPS--PSITLNYPRQSFDTAH--------FPVEEKAAIAQLRQFCQNGAGEY 223
Query: 355 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414
+ Q +G + ++S LA G LSPR L ++ + DG
Sbjct: 224 EQQRDFPAVEG----------TSRLSASLATGGLSPRQCLHRL------LAEQPQALDG- 266
Query: 415 SGSSGAGSNWLMFELLWRDFFR 436
GAGS WL EL+WR+F+R
Sbjct: 267 ----GAGSVWLN-ELIWREFYR 283
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 126/308 (40%), Gaps = 62/308 (20%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VW R DLR+HD+ +L A V+ + DP + KT P R ++ +E+V
Sbjct: 5 LVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNL--------KTTPRRRAWFLENVR 55
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
LR+ +ARG L V G P + E A+ + A AVYA + + K++ A+
Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSYTPYGRYRDAKVQEALPVP 115
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ L +++ Y F + GVE + A + L P G++
Sbjct: 116 LHLLPA--PHLLPPDLPRAYRV------YTPFARRFLGVE--APLPAPEALPKGPEEGEI 165
Query: 307 EPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 366
P + P L + + G+ AA + EA +L ++A E + DG
Sbjct: 166 -PREDPGL---------PLPEPGEEAALAGLRAFLEA--KLPRYAEE------RDRLDGE 207
Query: 367 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426
S ++SP+ A+G LSPR + W G GA W+
Sbjct: 208 GGS--------RLSPYFALGVLSPR---------------LAAWEAERRGGEGA-RKWVA 243
Query: 427 FELLWRDF 434
ELLWRDF
Sbjct: 244 -ELLWRDF 250
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/321 (21%), Positives = 129/321 (40%), Gaps = 46/321 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
+ +++WFRNDLRV+DN +L+ A N++ V+ ++ P+ + S + SF+
Sbjct: 2 QKNLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQS-----VSKKKISFMY 56
Query: 183 ESVSDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
+ L+K L L L+ K + ++ + E + +E +
Sbjct: 57 YHLISLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYL 116
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
++ + +G VK F + L+ + + E + F++KV I+ + Q
Sbjct: 117 VKKKLSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKV----IQNLHNNIPQCF 172
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQP 358
+PS+ + D+ L+ + + N GE EA+ RLK F Y+
Sbjct: 173 PVPSKRKSDR-------DIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCI-YKFND 224
Query: 359 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS----ISAASKWNDGE 414
+D + + +SP+L+ G +S R L KT S + S W D
Sbjct: 225 YFLKRDYPF-----LDATSMLSPYLSAGIISSRYCLKVLLKTKNSLPLNVLLTSPWFD-- 277
Query: 415 SGSSGAGSNWLMFELLWRDFF 435
++LWR+F+
Sbjct: 278 -------------QILWREFY 285
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VW R DLR+HD+ +L A V+ + DP + KT P R ++ +E+V
Sbjct: 5 LVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNL--------KTTPRRRAWFLENVR 55
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224
LR+ +ARG L V G P + E A+ + A AVYA
Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYA 93
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 23/96 (23%)
Query: 339 GETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 398
GE AL L+ F +A+ P+ ++ D + G S ++SP+ A+G LSPR
Sbjct: 178 GEEAALAGLRAF---LEAKLPRYAEE--RDRLDGEGGS-RLSPYFALGVLSPR------- 224
Query: 399 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 434
+ W G GA W+ ELLWRDF
Sbjct: 225 --------LAAWEAERRGGEGA-RKWVA-ELLWRDF 250
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFR DLR DN +L A N V +Y P + + P +A + ++
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQH-----HLAPIQADLIWRRLA 57
Query: 187 DLRKNLQARGSDL----VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L++ L A L V + +LAK + A V A+R+ DE + ++ +
Sbjct: 58 ELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQL 117
Query: 243 MKDEGI 248
+ ++GI
Sbjct: 118 LSEQGI 123
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIES 184
IVWFR DLRV DN +L A V+ ++ + P + G G R S +L S
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGHYHPG-------RVSRWWLKNS 66
Query: 185 VSDLRKNLQARGSDLVVRVGKPETV-LVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ L +L++ G+ L+ + L+++ K+ GA ++ + + + + + +
Sbjct: 67 LAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVL 126
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV 282
+GI V+ F LY ++ +LG + + F E+
Sbjct: 127 TAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERC 165
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + ++VW + DLR+ D+ L A L +Y F+P G + F+
Sbjct: 1 MEKINLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDA-----HYSERHWRFV 55
Query: 182 IESVSDLRKNL-QARGSDLVVRVGKPETVLVELAKAIGADAVYAHREV 228
+S+ + ++L Q++G L+V +T +A+ +A+Y+H+EV
Sbjct: 56 WQSLQAINRDLAQSKGEVLIV-TSDWQTCFARIAERYAIEAIYSHQEV 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,284,564
Number of Sequences: 539616
Number of extensions: 7213680
Number of successful extensions: 16647
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 16449
Number of HSP's gapped (non-prelim): 120
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)