Query 013801
Match_columns 436
No_of_seqs 129 out of 1254
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:22:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1np7_A DNA photolyase; protein 100.0 7.2E-53 2.5E-57 443.8 25.4 288 124-436 6-297 (489)
2 2j4d_A Cryptochrome 3, cryptoc 100.0 1.3E-52 4.3E-57 445.1 25.1 292 120-436 36-333 (525)
3 3fy4_A 6-4 photolyase; DNA rep 100.0 3.2E-53 1.1E-57 449.3 20.1 293 122-436 3-306 (537)
4 1owl_A Photolyase, deoxyribodi 100.0 1.1E-51 3.7E-56 434.2 22.5 283 124-436 3-291 (484)
5 3tvs_A Cryptochrome-1; circadi 100.0 1.4E-50 4.7E-55 429.8 24.3 296 122-436 2-318 (538)
6 2wq7_A RE11660P; lyase-DNA com 100.0 2.1E-50 7.3E-55 429.6 19.7 285 123-436 28-330 (543)
7 1dnp_A DNA photolyase; DNA rep 100.0 2.3E-50 8E-55 422.6 19.4 272 125-436 2-282 (471)
8 1u3d_A Cryptochrome 1 apoprote 100.0 2.3E-49 7.8E-54 418.9 21.6 287 119-436 7-301 (509)
9 2j07_A Deoxyribodipyrimidine p 100.0 1E-47 3.5E-52 397.3 21.0 250 125-436 3-252 (420)
10 2e0i_A 432AA long hypothetical 100.0 4.8E-48 1.7E-52 401.5 17.1 246 126-436 3-251 (440)
11 3umv_A Deoxyribodipyrimidine p 100.0 3.1E-45 1.1E-49 385.9 19.5 277 122-436 36-328 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 1.2E-44 4E-49 380.6 18.5 274 125-436 38-328 (482)
13 3zxs_A Cryptochrome B, rscryb; 100.0 8.8E-31 3E-35 274.0 12.5 284 120-436 10-325 (522)
14 3dlo_A Universal stress protei 91.1 2.8 9.7E-05 35.6 12.0 85 133-226 32-125 (155)
15 3fdx_A Putative filament prote 90.5 2.2 7.4E-05 35.1 10.5 90 138-227 16-115 (143)
16 3s3t_A Nucleotide-binding prot 90.1 1.8 6.2E-05 35.8 9.6 95 133-227 13-117 (146)
17 3fg9_A Protein of universal st 90.0 1.4 4.8E-05 37.1 9.0 87 137-227 29-128 (156)
18 3tnj_A Universal stress protei 88.8 3.9 0.00013 33.9 10.8 121 133-253 14-145 (150)
19 2dum_A Hypothetical protein PH 86.9 2.5 8.5E-05 36.1 8.5 121 133-253 13-154 (170)
20 3hgm_A Universal stress protei 86.5 5.3 0.00018 32.8 10.2 91 137-227 14-119 (147)
21 1tq8_A Hypothetical protein RV 83.3 2.3 8E-05 36.5 6.6 121 133-253 25-156 (163)
22 2z08_A Universal stress protei 78.8 14 0.00048 30.0 9.7 86 137-227 14-108 (137)
23 3rjz_A N-type ATP pyrophosphat 78.3 3.6 0.00012 38.5 6.4 97 140-251 19-120 (237)
24 3idf_A USP-like protein; unive 75.0 25 0.00084 28.3 10.2 87 138-227 14-110 (138)
25 1jmv_A USPA, universal stress 73.8 24 0.00082 28.5 9.9 115 133-253 10-136 (141)
26 3fvv_A Uncharacterized protein 73.3 15 0.00053 32.3 9.1 66 182-247 94-172 (232)
27 3olq_A Universal stress protei 72.8 61 0.0021 30.1 14.3 115 139-254 177-304 (319)
28 3loq_A Universal stress protei 71.4 50 0.0017 30.5 12.7 103 133-253 178-288 (294)
29 3mt0_A Uncharacterized protein 71.0 25 0.00085 32.6 10.4 84 139-227 155-246 (290)
30 3loq_A Universal stress protei 70.1 51 0.0017 30.4 12.4 109 143-254 44-161 (294)
31 1mjh_A Protein (ATP-binding do 62.5 26 0.0009 29.1 7.9 95 133-227 13-129 (162)
32 3u80_A 3-dehydroquinate dehydr 61.7 33 0.0011 29.7 8.2 80 182-262 28-114 (151)
33 2gm3_A Unknown protein; AT3G01 59.9 54 0.0019 27.6 9.6 73 182-254 86-162 (175)
34 1gqo_A Dehydroquinase; dehydra 58.4 56 0.0019 28.0 9.0 74 186-263 32-108 (143)
35 3i8o_A KH domain-containing pr 57.1 49 0.0017 28.3 8.5 86 151-253 32-130 (142)
36 2uyg_A 3-dehydroquinate dehydr 57.1 68 0.0023 27.7 9.4 74 186-263 31-108 (149)
37 1uqr_A 3-dehydroquinate dehydr 56.2 52 0.0018 28.5 8.5 73 186-262 33-108 (154)
38 3h75_A Periplasmic sugar-bindi 55.1 61 0.0021 30.6 10.0 72 180-256 18-95 (350)
39 3kip_A 3-dehydroquinase, type 54.1 56 0.0019 28.7 8.4 67 193-263 55-125 (167)
40 3lwz_A 3-dehydroquinate dehydr 54.0 66 0.0022 27.9 8.8 75 184-262 33-114 (153)
41 3qk7_A Transcriptional regulat 54.0 58 0.002 29.9 9.4 72 179-256 23-97 (294)
42 3jy6_A Transcriptional regulat 53.3 85 0.0029 28.3 10.4 70 180-256 21-94 (276)
43 1b43_A Protein (FEN-1); nuclea 52.9 33 0.0011 33.4 7.8 43 183-225 130-172 (340)
44 1h05_A 3-dehydroquinate dehydr 52.4 59 0.002 28.0 8.2 74 186-263 34-110 (146)
45 3l49_A ABC sugar (ribose) tran 52.0 78 0.0027 28.6 9.9 72 180-256 19-95 (291)
46 2iel_A Hypothetical protein TT 48.5 74 0.0025 27.1 8.1 72 181-252 56-132 (138)
47 3n8k_A 3-dehydroquinate dehydr 47.5 65 0.0022 28.4 7.8 75 184-262 54-135 (172)
48 1gtz_A 3-dehydroquinate dehydr 47.2 66 0.0023 28.0 7.7 73 186-262 38-114 (156)
49 1sur_A PAPS reductase; assimil 47.0 96 0.0033 27.5 9.4 70 183-254 31-104 (215)
50 3olq_A Universal stress protei 46.6 1.7E+02 0.0057 27.0 11.5 120 133-256 15-151 (319)
51 3n07_A 3-deoxy-D-manno-octulos 45.6 38 0.0013 29.9 6.3 53 190-248 62-114 (195)
52 2l69_A Rossmann 2X3 fold prote 45.5 37 0.0013 27.1 5.3 65 183-251 13-79 (134)
53 3mmz_A Putative HAD family hyd 45.2 31 0.0011 29.6 5.6 54 188-248 47-100 (176)
54 3gv0_A Transcriptional regulat 45.1 73 0.0025 29.0 8.5 71 180-256 24-98 (288)
55 2p9j_A Hypothetical protein AQ 43.8 1.1E+02 0.0036 25.2 8.7 57 187-249 43-99 (162)
56 3e61_A Putative transcriptiona 43.4 1E+02 0.0035 27.6 9.2 69 180-256 22-95 (277)
57 2c4w_A 3-dehydroquinate dehydr 43.1 91 0.0031 27.6 8.1 74 186-263 41-120 (176)
58 3egc_A Putative ribose operon 42.9 78 0.0027 28.7 8.3 71 180-256 22-96 (291)
59 3ij5_A 3-deoxy-D-manno-octulos 42.5 28 0.00095 31.3 5.0 55 188-248 84-138 (211)
60 4eze_A Haloacid dehalogenase-l 42.4 1E+02 0.0035 29.3 9.4 45 182-226 181-225 (317)
61 2lnd_A De novo designed protei 42.3 40 0.0014 26.1 5.0 62 183-247 38-103 (112)
62 1vp8_A Hypothetical protein AF 42.1 28 0.00096 31.5 4.7 68 183-252 30-103 (201)
63 3l6u_A ABC-type sugar transpor 41.7 1.6E+02 0.0054 26.5 10.3 72 180-256 22-98 (293)
64 3k4h_A Putative transcriptiona 41.2 82 0.0028 28.5 8.2 71 180-256 27-101 (292)
65 3tva_A Xylose isomerase domain 40.9 1.1E+02 0.0038 27.9 9.1 69 183-251 51-156 (290)
66 4fe7_A Xylose operon regulator 40.4 44 0.0015 32.8 6.5 68 180-255 38-105 (412)
67 3mn1_A Probable YRBI family ph 39.7 32 0.0011 29.9 4.8 56 188-249 54-109 (189)
68 3nvb_A Uncharacterized protein 39.5 1E+02 0.0034 30.8 8.9 64 180-249 256-327 (387)
69 3hcw_A Maltose operon transcri 39.3 93 0.0032 28.4 8.3 72 179-256 25-100 (295)
70 3kzx_A HAD-superfamily hydrola 38.6 57 0.002 28.2 6.4 33 186-218 109-141 (231)
71 3p6l_A Sugar phosphate isomera 38.1 1.2E+02 0.0041 27.2 8.8 64 183-251 63-132 (262)
72 3mpo_A Predicted hydrolase of 38.0 1.9E+02 0.0065 25.9 10.2 72 189-260 31-118 (279)
73 3mt0_A Uncharacterized protein 37.7 2.4E+02 0.0081 25.7 12.4 111 124-254 8-127 (290)
74 3dbi_A Sugar-binding transcrip 37.7 2.3E+02 0.0077 26.3 10.9 72 180-256 77-152 (338)
75 3e3m_A Transcriptional regulat 37.1 2E+02 0.0069 27.0 10.6 70 180-255 84-157 (355)
76 3e8m_A Acylneuraminate cytidyl 37.0 60 0.002 26.9 6.0 38 189-226 40-77 (164)
77 3n28_A Phosphoserine phosphata 36.2 1.5E+02 0.0051 27.9 9.4 43 183-225 181-223 (335)
78 3m1y_A Phosphoserine phosphata 35.9 1.1E+02 0.0037 26.0 7.7 41 184-224 79-119 (217)
79 3uug_A Multiple sugar-binding 35.5 1.6E+02 0.0053 27.1 9.3 72 180-256 17-93 (330)
80 3lmz_A Putative sugar isomeras 35.2 1.1E+02 0.0039 27.4 8.1 64 183-251 61-130 (257)
81 3huu_A Transcription regulator 35.2 1.2E+02 0.0042 27.7 8.4 73 179-257 40-116 (305)
82 2fep_A Catabolite control prot 34.6 2.4E+02 0.0081 25.5 10.3 70 180-255 30-103 (289)
83 3ab8_A Putative uncharacterize 34.2 1E+02 0.0034 27.8 7.5 116 137-254 12-148 (268)
84 3rfu_A Copper efflux ATPase; a 34.2 85 0.0029 34.0 7.9 58 190-252 564-621 (736)
85 3o74_A Fructose transport syst 34.1 1.8E+02 0.0062 25.7 9.2 72 180-256 16-91 (272)
86 1toa_A Tromp-1, protein (perip 33.6 1.4E+02 0.0048 28.5 8.7 68 181-253 175-252 (313)
87 3raz_A Thioredoxin-related pro 33.5 75 0.0026 25.8 6.0 46 177-223 39-84 (151)
88 3tb6_A Arabinose metabolism tr 33.3 1.5E+02 0.0051 26.6 8.6 76 180-256 29-108 (298)
89 3cis_A Uncharacterized protein 33.3 56 0.0019 30.4 5.7 89 133-227 179-276 (309)
90 3p96_A Phosphoserine phosphata 33.3 1.5E+02 0.0052 28.9 9.2 66 183-249 259-338 (415)
91 3l8h_A Putative haloacid dehal 33.2 36 0.0012 28.7 4.0 25 182-206 29-53 (179)
92 4gxt_A A conserved functionall 32.7 21 0.00073 35.5 2.7 45 181-225 222-272 (385)
93 3ujp_A Mn transporter subunit; 32.7 1.7E+02 0.006 27.8 9.2 72 177-253 164-245 (307)
94 3ksm_A ABC-type sugar transpor 32.6 1.1E+02 0.0038 27.2 7.5 72 180-256 14-93 (276)
95 2rgy_A Transcriptional regulat 32.5 2.6E+02 0.0088 25.2 10.2 69 180-255 22-98 (290)
96 3cx3_A Lipoprotein; zinc-bindi 32.3 1.7E+02 0.006 27.2 9.0 69 180-253 156-232 (284)
97 3dx5_A Uncharacterized protein 31.6 2.2E+02 0.0077 25.6 9.6 70 182-251 47-140 (286)
98 3v7e_A Ribosome-associated pro 31.5 60 0.0021 24.7 4.6 44 208-254 17-60 (82)
99 3n1u_A Hydrolase, HAD superfam 31.2 1.1E+02 0.0038 26.4 7.0 38 189-226 55-92 (191)
100 8abp_A L-arabinose-binding pro 31.1 2.7E+02 0.0093 25.0 10.1 72 180-256 16-91 (306)
101 1q77_A Hypothetical protein AQ 30.5 59 0.002 26.0 4.7 92 133-227 12-118 (138)
102 3kcq_A Phosphoribosylglycinami 29.9 72 0.0025 29.0 5.6 69 186-254 72-143 (215)
103 3ix7_A Uncharacterized protein 29.6 1.3E+02 0.0043 25.4 6.6 87 149-253 31-122 (134)
104 3gi1_A LBP, laminin-binding pr 29.3 2E+02 0.007 26.9 8.9 70 179-253 157-234 (286)
105 2ioy_A Periplasmic sugar-bindi 29.2 3.1E+02 0.011 24.5 10.0 71 180-255 15-90 (283)
106 2izo_A FEN1, flap structure-sp 29.0 75 0.0026 30.9 5.9 42 183-224 127-168 (346)
107 3cis_A Uncharacterized protein 29.0 1.7E+02 0.0056 27.1 8.2 127 122-255 18-161 (309)
108 2nyv_A Pgpase, PGP, phosphogly 28.9 1.1E+02 0.0037 26.5 6.6 32 187-218 90-121 (222)
109 3m9w_A D-xylose-binding peripl 28.8 2.4E+02 0.0083 25.6 9.4 73 180-256 16-92 (313)
110 3sd7_A Putative phosphatase; s 28.3 94 0.0032 27.0 6.1 45 184-228 114-162 (240)
111 1zun_A Sulfate adenylyltransfe 28.1 3E+02 0.01 26.4 10.0 73 179-254 30-110 (325)
112 3k9c_A Transcriptional regulat 28.1 1.7E+02 0.0057 26.5 8.0 69 180-256 25-97 (289)
113 3kws_A Putative sugar isomeras 27.8 1.6E+02 0.0053 26.8 7.7 68 184-251 65-163 (287)
114 3rot_A ABC sugar transporter, 27.8 2.4E+02 0.0083 25.4 9.1 72 180-256 17-95 (297)
115 2w91_A Endo-beta-N-acetylgluco 27.7 1.5E+02 0.0053 31.5 8.4 104 124-252 92-203 (653)
116 3gkn_A Bacterioferritin comigr 27.7 1.1E+02 0.0037 25.1 6.1 44 181-224 54-97 (163)
117 3kke_A LACI family transcripti 27.7 2.2E+02 0.0076 25.9 8.8 71 180-256 29-103 (303)
118 2o8v_A Phosphoadenosine phosph 27.5 2.2E+02 0.0076 25.9 8.7 69 184-254 33-105 (252)
119 3p9x_A Phosphoribosylglycinami 27.4 85 0.0029 28.5 5.6 99 138-254 41-142 (211)
120 1xvl_A Mn transporter, MNTC pr 27.4 2.3E+02 0.0079 27.1 9.1 69 180-253 181-259 (321)
121 1pq4_A Periplasmic binding pro 27.3 1.9E+02 0.0066 27.1 8.4 43 184-226 225-268 (291)
122 1nf2_A Phosphatase; structural 27.3 1.7E+02 0.0057 26.5 7.8 74 184-259 24-111 (268)
123 4dw8_A Haloacid dehalogenase-l 27.3 3.3E+02 0.011 24.2 10.6 68 190-260 32-119 (279)
124 3nkl_A UDP-D-quinovosamine 4-d 27.2 1.2E+02 0.0042 24.4 6.2 44 207-252 54-97 (141)
125 2pq0_A Hypothetical conserved 27.1 2.4E+02 0.0083 24.9 8.8 65 190-257 30-108 (258)
126 3g1w_A Sugar ABC transporter; 27.1 3.3E+02 0.011 24.5 9.9 72 180-256 18-95 (305)
127 2prs_A High-affinity zinc upta 27.0 1.7E+02 0.0058 27.3 7.9 69 180-253 153-229 (284)
128 1pq4_A Periplasmic binding pro 26.9 87 0.003 29.6 5.8 69 180-253 169-243 (291)
129 2yvq_A Carbamoyl-phosphate syn 26.7 2.1E+02 0.0073 23.8 7.7 42 210-251 88-129 (143)
130 2q02_A Putative cytoplasmic pr 26.5 2.3E+02 0.0079 25.2 8.6 69 183-251 51-137 (272)
131 3mc1_A Predicted phosphatase, 26.3 1E+02 0.0034 26.4 5.8 45 184-228 90-138 (226)
132 3kjx_A Transcriptional regulat 25.8 2.5E+02 0.0085 26.1 9.0 69 180-254 82-154 (344)
133 1k1e_A Deoxy-D-mannose-octulos 25.7 81 0.0028 26.8 5.0 38 188-225 43-80 (180)
134 3h5o_A Transcriptional regulat 25.5 2.7E+02 0.0091 25.8 9.1 70 180-255 76-149 (339)
135 2xzm_U Ribosomal protein L7AE 25.4 1.9E+02 0.0064 23.9 6.9 44 208-253 30-73 (126)
136 3da8_A Probable 5'-phosphoribo 25.4 1.2E+02 0.004 27.6 6.1 107 124-253 40-149 (215)
137 2no4_A (S)-2-haloacid dehaloge 25.3 1.9E+02 0.0066 24.9 7.6 46 183-228 108-157 (240)
138 3brq_A HTH-type transcriptiona 25.0 3E+02 0.01 24.5 9.1 69 180-255 35-109 (296)
139 1k77_A EC1530, hypothetical pr 24.8 3.2E+02 0.011 24.0 9.2 67 185-251 42-141 (260)
140 2rjo_A Twin-arginine transloca 24.8 3.4E+02 0.012 24.9 9.7 71 180-255 19-96 (332)
141 3d8u_A PURR transcriptional re 24.6 2.2E+02 0.0074 25.2 8.0 69 180-255 17-90 (275)
142 3tqr_A Phosphoribosylglycinami 24.5 86 0.0029 28.5 5.0 102 137-256 42-146 (215)
143 2r8e_A 3-deoxy-D-manno-octulos 24.3 1.6E+02 0.0056 25.0 6.7 55 188-248 61-115 (188)
144 3ngf_A AP endonuclease, family 24.1 2.7E+02 0.0093 24.9 8.6 65 185-250 50-147 (269)
145 2o20_A Catabolite control prot 24.0 4E+02 0.014 24.4 10.0 70 180-255 77-150 (332)
146 4fe3_A Cytosolic 5'-nucleotida 24.0 76 0.0026 29.5 4.7 18 210-227 149-166 (297)
147 3bbl_A Regulatory protein of L 24.0 2.2E+02 0.0075 25.6 8.0 69 180-255 22-95 (287)
148 2iks_A DNA-binding transcripti 23.7 3.5E+02 0.012 24.2 9.4 71 180-256 34-109 (293)
149 2x7x_A Sensor protein; transfe 23.4 4.3E+02 0.015 24.2 10.4 71 180-255 19-95 (325)
150 3qc0_A Sugar isomerase; TIM ba 23.2 1.3E+02 0.0044 27.0 6.1 70 182-251 44-140 (275)
151 1zrn_A L-2-haloacid dehalogena 23.2 2E+02 0.007 24.5 7.3 44 184-227 99-146 (232)
152 4ex6_A ALNB; modified rossman 23.1 88 0.003 27.0 4.8 34 185-218 109-142 (237)
153 1dbq_A Purine repressor; trans 23.0 4E+02 0.014 23.6 10.3 70 180-256 21-96 (289)
154 2wm8_A MDP-1, magnesium-depend 23.0 1.7E+02 0.0059 24.7 6.6 40 183-222 71-111 (187)
155 3m9l_A Hydrolase, haloacid deh 23.0 90 0.0031 26.5 4.8 34 186-219 76-109 (205)
156 3bil_A Probable LACI-family tr 23.0 3.2E+02 0.011 25.5 9.2 70 180-255 80-153 (348)
157 3dnp_A Stress response protein 22.8 2.8E+02 0.0096 24.9 8.5 71 190-260 33-116 (290)
158 3ixr_A Bacterioferritin comigr 22.8 1.2E+02 0.0042 25.7 5.6 40 182-221 71-110 (179)
159 2nyt_A Probable C->U-editing e 22.8 2.7E+02 0.0091 24.8 7.8 72 179-252 68-144 (190)
160 1yx1_A Hypothetical protein PA 22.5 2E+02 0.0069 25.8 7.3 66 185-251 53-129 (264)
161 1ccw_A Protein (glutamate muta 22.5 3.2E+02 0.011 22.3 8.8 59 189-248 24-83 (137)
162 2fvy_A D-galactose-binding per 22.3 4E+02 0.014 23.8 9.5 72 180-256 16-93 (309)
163 3jvd_A Transcriptional regulat 22.3 1.6E+02 0.0055 27.5 6.8 65 180-256 78-145 (333)
164 2hsz_A Novel predicted phospha 22.1 1.3E+02 0.0045 26.5 5.9 7 215-221 127-133 (243)
165 3l12_A Putative glycerophospho 22.1 1.5E+02 0.0051 28.0 6.5 54 186-249 258-311 (313)
166 3lor_A Thiol-disulfide isomera 21.4 1.9E+02 0.0067 23.1 6.4 46 175-220 43-95 (160)
167 3hs3_A Ribose operon repressor 21.1 1.3E+02 0.0043 27.2 5.6 66 180-256 24-94 (277)
168 3dao_A Putative phosphatse; st 21.1 2.4E+02 0.0082 25.6 7.6 67 191-260 50-133 (283)
169 3e58_A Putative beta-phosphogl 20.8 3.5E+02 0.012 22.2 8.1 66 182-248 91-160 (214)
170 3hh8_A Metal ABC transporter s 20.8 3.3E+02 0.011 25.5 8.7 72 177-253 157-238 (294)
171 1t57_A Conserved protein MTH16 20.6 35 0.0012 31.0 1.4 67 183-252 38-110 (206)
172 2o1e_A YCDH; alpha-beta protei 20.4 1.6E+02 0.0055 28.0 6.3 69 179-252 168-244 (312)
173 3dx5_A Uncharacterized protein 20.4 2.7E+02 0.0091 25.1 7.7 54 175-228 115-173 (286)
174 3ib6_A Uncharacterized protein 20.3 2.8E+02 0.0096 23.3 7.5 48 181-228 35-89 (189)
175 3o1i_D Periplasmic protein TOR 20.3 2.8E+02 0.0095 24.9 7.8 71 180-256 19-96 (304)
176 1meo_A Phosophoribosylglycinam 20.2 1.8E+02 0.0061 26.1 6.2 103 137-257 38-143 (209)
No 1
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=7.2e-53 Score=443.76 Aligned_cols=288 Identities=39% Similarity=0.729 Sum_probs=236.5
Q ss_pred CeEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Q 013801 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (436)
Q Consensus 124 ~~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~ 203 (436)
+.+|||||||||++||+||.+|++.+.+|+||||+|+.++.....|+...+++|+.||++||++|+++|+++|++|+|+.
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 85 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTT 85 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 57899999999999999999999888899999999998876443445568999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHHHHHh
Q 013801 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283 (436)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~r~~~ 283 (436)
|++.++|.+|++++++++|+++.+|+++++++|++|+++|++.||+++.+++++|++++++++..|++|.+||+|+++|+
T Consensus 86 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F~~~~~ 165 (489)
T 1np7_A 86 GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIE 165 (489)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999998
Q ss_pred -hc-cccccchhcccCCCCCCCCCCCCCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHHHHHHH--HHHhcCCC
Q 013801 284 -GV-EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA--AEYQAQPP 359 (436)
Q Consensus 284 -~l-~~~~~~~~p~~l~~~p~~~~~~~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl--~~~l~~Y~ 359 (436)
+. ..+.+++.|..+...+. .+....+|+++++++... +......|+|||++|+++|++|| .+++.+|.
T Consensus 166 ~~~~~~~~p~~~p~~~~~~~~--~~~~~~~~~~~~l~~~~~------~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~ 237 (489)
T 1np7_A 166 KKKISIRPCFFAPSQLLPSPN--IKLELTAPPPEFFPQINF------DHRSVLAFQGGETAGLARLQDYFWHGDRLKDYK 237 (489)
T ss_dssp TTTCCCCCCCCCCSCCCCCCC--CCCCCCCCCGGGSCCCCC------CTTSSCCCCCSHHHHHHHHHHHHTTSCCGGGHH
T ss_pred HhccCCCCCCCCcccccCccc--cccccCCCCHhhcCCCCc------CccccCCCCCcHHHHHHHHHHHHhcchhHhhhh
Confidence 53 33344444333222111 112234666666665321 11112358999999999999999 56888998
Q ss_pred CCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHhhheeecccC
Q 013801 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436 (436)
Q Consensus 360 ~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~WREFyr 436 (436)
+. ||++++.++||+|||||+||+||||+|++++.++.... ....+..||++||+|||||+
T Consensus 238 ~~-----Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~------------~~~~~~~~f~~eL~WRef~~ 297 (489)
T 1np7_A 238 ET-----RNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQER------------VSNDSTHWLIFELLWRDFFR 297 (489)
T ss_dssp HH-----TTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT------------CCSHHHHHHHHHHHHHHHHH
T ss_pred hc-----ccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHhhcc------------cccchHHHHHHHHHHHHHHH
Confidence 64 77767779999999999999999999999998743221 11334567779999999984
No 2
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=1.3e-52 Score=445.11 Aligned_cols=292 Identities=39% Similarity=0.742 Sum_probs=236.4
Q ss_pred CCCCCeEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q 013801 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSD 198 (436)
Q Consensus 120 ~~~~~~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~-~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~ 198 (436)
.+.++.+|||||||||++||+||.+|++.+.+|+||||+|+.++..... |+...+.+|+.||++||++|+++|+++|++
T Consensus 36 ~~~~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~ 115 (525)
T 2j4d_A 36 RKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLN 115 (525)
T ss_dssp CTTCCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 3445789999999999999999999998878999999999987753221 345679999999999999999999999999
Q ss_pred EEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcC--CcEEEeeCCeeeeCCCCCCCCCCCCCChh
Q 013801 199 LVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYG 276 (436)
Q Consensus 199 L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~g--I~v~~~~~~~Lv~p~~l~~~~g~~~~~ft 276 (436)
|+|+.|++.++|.+|++++++++|+++.+|+++++++|++|+++|++.| |+++.+++++|++++++++..|++|++|+
T Consensus 116 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~vft 195 (525)
T 2j4d_A 116 LLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYT 195 (525)
T ss_dssp CEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSSHH
T ss_pred EEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCcccHH
Confidence 9999999999999999999999999999999999999999999999999 89999999999999999988889999999
Q ss_pred hHHHHHhhc-cccccchhcccCCCCCCCCCCCCCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHHHHHHH-H-H
Q 013801 277 GFREKVKGV-EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA-A-E 353 (436)
Q Consensus 277 ~F~r~~~~l-~~~~~~~~p~~l~~~p~~~~~~~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl-~-~ 353 (436)
+|+++|++. ....+++.|..++..+. .+....+|+++++++... +......|+|||++|+++|++|| . +
T Consensus 196 ~F~r~~~~~~~~~~p~~~p~~~~~~~~--~~~~~~~~~l~~l~~~~~------~~~~~~~~~~Ge~~A~~~L~~Fl~~~~ 267 (525)
T 2j4d_A 196 QFRKSVEAKCSIRSSTRIPLSLGPTPS--VDDWGDVPTLEKLGVEPQ------EVTRGMRFVGGESAGVGRVFEYFWKKD 267 (525)
T ss_dssp HHHHHHHHHCCCCCCCCBCSCCCCCCC--CSCCCCCCCTTTTTCCCC------CCCSEEEECCSHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhcCCCCCCCCccccCCccc--cccccCCCCHHHcCCCcc------cccccCCCCCcHHHHHHHHHHHHhhCc
Confidence 999999883 33334443332222110 012234556666655321 01111248999999999999999 5 4
Q ss_pred HhcCCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHhhheeec
Q 013801 354 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRD 433 (436)
Q Consensus 354 ~l~~Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~WRE 433 (436)
++.+|.+. ||++++.++||+|||||+|||||||+|++++.++.... ....+..||++||+|||
T Consensus 268 ~l~~Y~~~-----Rd~~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~------------~~~~~~~~f~~EL~WRE 330 (525)
T 2j4d_A 268 LLKVYKET-----RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKER------------VANNSTYWVLFELIWRD 330 (525)
T ss_dssp CGGGHHHH-----TTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT------------CCSHHHHHHHHHHHHHH
T ss_pred hHhhhccc-----CCCccccccCCCcChhhcCCcCCHHHHHHHHHHHhhcc------------cccccHHHHHHHHHHHH
Confidence 78899864 77667889999999999999999999999998754321 11234567779999999
Q ss_pred ccC
Q 013801 434 FFR 436 (436)
Q Consensus 434 Fyr 436 (436)
||+
T Consensus 331 f~~ 333 (525)
T 2j4d_A 331 YFR 333 (525)
T ss_dssp HHH
T ss_pred HHH
Confidence 984
No 3
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=3.2e-53 Score=449.32 Aligned_cols=293 Identities=28% Similarity=0.440 Sum_probs=230.7
Q ss_pred CCCeEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 013801 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKS----SSGFDKTGPYRASFLIESVSDLRKNLQARGS 197 (436)
Q Consensus 122 ~~~~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~----~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi 197 (436)
..+.+|||||||||++||+||++|++.+.+|+||||+||.++... ..|....+.+|+.||++||.+|+++|+++|+
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~ 82 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGS 82 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457899999999999999999999998889999999999876532 1234467899999999999999999999999
Q ss_pred eEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCC-CCCCCCChh
Q 013801 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYG 276 (436)
Q Consensus 198 ~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~-~g~~~~~ft 276 (436)
+|+|+.|++.++|.+|+++++|++||+|.+|++++++||++|+++|++.||.++.+++++|++++++..+ .|++|++||
T Consensus 83 ~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~vft 162 (537)
T 3fy4_A 83 RLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQ 162 (537)
T ss_dssp CCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSSHH
T ss_pred ceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998744 457999999
Q ss_pred hHHHHHhhccc-cccc-hhcccCCCCCCCCCCCCCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHHHHHHHHH-
Q 013801 277 GFREKVKGVEI-RKTI-EALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE- 353 (436)
Q Consensus 277 ~F~r~~~~l~~-~~~~-~~p~~l~~~p~~~~~~~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~- 353 (436)
+|+++|.+... +.++ +.|..++..+....+....+|+++++++.+.. ......|+|||++|+++|++||.+
T Consensus 163 pf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l~~l~~~~~~------~~~~~~~~~Ge~~A~~~L~~Fl~~~ 236 (537)
T 3fy4_A 163 SFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDE------QADWTPFRGGESEALKRLTKSISDK 236 (537)
T ss_dssp HHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGG------SSCCCSCCCSHHHHHHHHHHHTCCH
T ss_pred HHHHHHHhhcCCcCCCCCccccCCCcccccccccccCCcHHhcCCCccc------ccccCCCCccHHHHHHHHHHHHhCc
Confidence 99999987531 2221 22222211111011123456777777765421 001125899999999999999987
Q ss_pred -HhcCCCCCCCCCCCCCCC--CCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHhhhe
Q 013801 354 -YQAQPPKGNKDGNHDSIY--GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 430 (436)
Q Consensus 354 -~l~~Y~~~~~~~~Rd~~~--~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~ 430 (436)
.+..|.+. ||.+. +.++||+|||||+|||||||+|++++.+.+.+.. ....+..+|++||+
T Consensus 237 ~~l~~Y~~~-----rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~-----------~~~~~~~~f~~eL~ 300 (537)
T 3fy4_A 237 AWVANFEKP-----KGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-----------KHTSPPVSLLGQLL 300 (537)
T ss_dssp HHHHTCCGG-----GCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTS-----------CCCCTTTSHHHHHH
T ss_pred hHHhhhccc-----ccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcc-----------cccccHHHHHHHHH
Confidence 58899874 55422 2588999999999999999999999988653211 01222334559999
Q ss_pred eecccC
Q 013801 431 WRDFFR 436 (436)
Q Consensus 431 WREFyr 436 (436)
|||||+
T Consensus 301 WRef~~ 306 (537)
T 3fy4_A 301 WREFFY 306 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999984
No 4
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=1.1e-51 Score=434.18 Aligned_cols=283 Identities=24% Similarity=0.435 Sum_probs=227.3
Q ss_pred CeEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Q 013801 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (436)
Q Consensus 124 ~~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~ 203 (436)
+++|||||||||++||+||.+|++.+.+|+||||+|+.++.. ...+.+|+.||++||++|+++|+++|++|+|+.
T Consensus 3 ~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~~-----~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~ 77 (484)
T 1owl_A 3 APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQS-----ADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ 77 (484)
T ss_dssp CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTC-----TTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCCEEEEEEEcchhhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468999999999999999999997556999999999987643 257899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHHHHHh
Q 013801 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283 (436)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~r~~~ 283 (436)
|++.++|.+|++++++++|++|.+|+++++++|++|+++|++.||+++.+++++|++++++..+.|++|++||+|+++|+
T Consensus 78 g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~ 157 (484)
T 1owl_A 78 GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQ 157 (484)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999998
Q ss_pred hccccccchhcccCCCCCC------CCCCCCCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHhcC
Q 013801 284 GVEIRKTIEALDQLKGLPS------RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357 (436)
Q Consensus 284 ~l~~~~~~~~p~~l~~~p~------~~~~~~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~ 357 (436)
+.+...+++.|..++..+. .... ...+++++.+++.. .+. . .|+|||++|+++|++||.+++.+
T Consensus 158 ~~~~~~p~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~------~~~--~-~~~~Ge~~A~~~L~~Fl~~~l~~ 227 (484)
T 1owl_A 158 AQPKPTPVATPTELVDLSPEQLTAIAPLL-LSELPTLKQLGFDW------DGG--F-PVEPGETAAIARLQEFCDRAIAD 227 (484)
T ss_dssp HSCCCCCCCCCCSCCCCCHHHHHHHGGGC-CSSCCCTGGGTCCC------CSC--C-SSCSSHHHHHHHHHHHHHTGGGG
T ss_pred HhcCCCCCCCccccccccccccccccccc-cCCCCCHHHcCCCc------ccc--C-cCCCCHHHHHHHHHHHHHHHHHH
Confidence 7543223333322211000 0000 11234444443321 111 2 58999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHhhheeecccC
Q 013801 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436 (436)
Q Consensus 358 Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~WREFyr 436 (436)
|.+. || .++.++||+|||||+|||||||+|++++.+......... ..++.+.|+ +||+|||||+
T Consensus 228 Y~~~-----rd-~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~--------~~~~~~~fl-~eL~WREf~~ 291 (484)
T 1owl_A 228 YDPQ-----RN-FPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDE--------ARNSIRVWQ-QELAWREFYQ 291 (484)
T ss_dssp HHHH-----TT-CTTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHH--------HHHHHHHHH-HHHHHHHHHH
T ss_pred hccc-----cC-CCCccCCcCccHhHcCCCcCHHHHHHHHHHHhccccccc--------ccccHHHHH-HHHHHHHHHH
Confidence 9874 77 478899999999999999999999999987654100000 013345676 7999999984
No 5
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=1.4e-50 Score=429.80 Aligned_cols=296 Identities=22% Similarity=0.331 Sum_probs=226.3
Q ss_pred CCCeEEEEEeCCCCccCcHHHHHHhhcCC---ceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---
Q 013801 122 IRRASIVWFRNDLRVHDNESLNTANNESV---SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQAR--- 195 (436)
Q Consensus 122 ~~~~~LvWfRrDLRl~DN~AL~~A~~~~~---~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~--- 195 (436)
.++++|||||||||++||+||.+|++.+. +|+||||+||.++.. ...+.+|+.||++||.+|+++|+++
T Consensus 2 ~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~~-----~~~~~~r~~Fl~~sL~~L~~~L~~~~~~ 76 (538)
T 3tvs_A 2 TRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGT-----KNVGYNRMRFLLDSLQDIDDQLQAATDG 76 (538)
T ss_dssp CSCEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSCS-----TTCCHHHHHHHHHHHHHHHHHGGGSCSS
T ss_pred CCCcEEEEeCCCcchhhhHHHHHHHHhCCCCCCEEEEEecChhhhcc-----CCCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 57789999999999999999999998766 999999999988754 2578999999999999999999999
Q ss_pred CCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCC-CCCCCCC
Q 013801 196 GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTN 274 (436)
Q Consensus 196 Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~-~g~~~~~ 274 (436)
|++|+|+.|++.++|.+|+++++|++||+|++|++++++||++|+++|++.||.++.+++++|++++.+..+ .|.+|.+
T Consensus 77 G~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~ 156 (538)
T 3tvs_A 77 RGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLT 156 (538)
T ss_dssp SSCCEEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCS
T ss_pred CCeEEEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998655 4568899
Q ss_pred hhhHHHHHhhcccc-ccchhccc--CC--CCCCCCCCC---CCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHH
Q 013801 275 YGGFREKVKGVEIR-KTIEALDQ--LK--GLPSRGDVE---PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQR 346 (436)
Q Consensus 275 ft~F~r~~~~l~~~-~~~~~p~~--l~--~~p~~~~~~---~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~ 346 (436)
|++|+++++++... .+++.|.. +. ..|...... ...+|+++++++.+.. ........|+|||++|+++
T Consensus 157 f~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~----~~~~~~~~~~~Ge~~A~~~ 232 (538)
T 3tvs_A 157 YQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDN----MGFLAKINWRGGETQALLL 232 (538)
T ss_dssp HHHHHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCC----SSCCCCCCCCCCHHHHHHH
T ss_pred hHHHHHHHHhhCCCCCCCCCccccccccccCCcccccccccccCCCCHHHcCCCccc----ccccccCCCCCCHHHHHHH
Confidence 99999998775322 23332211 11 111100000 0235666777664421 0000123689999999999
Q ss_pred HHHHHHH----HhcCCCCCCCCCCCCCCCC-CCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCC-CCCc
Q 013801 347 LKKFAAE----YQAQPPKGNKDGNHDSIYG-ANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG-SSGA 420 (436)
Q Consensus 347 L~~Fl~~----~l~~Y~~~~~~~~Rd~~~~-~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~-~~~~ 420 (436)
|++|+.+ .+..|.+. ||++.+ .++||+|||||+|||||||+|++++.+...+... .+...+ ...+
T Consensus 233 L~~Fl~~~~~~~l~~y~~~-----r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~----~~~~~~~~~~~ 303 (538)
T 3tvs_A 233 LDERLKVEQHAFERGFYLP-----NQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQL----RACVRGVQMTG 303 (538)
T ss_dssp HHHHHHHHHHHHHSCCCCT-----TTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTCSSSC----CCCCSSSCCTT
T ss_pred HHHHHHhhhhhhHhhhccc-----ccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHhhhcc----cccccccccch
Confidence 9999943 37788764 565444 5789999999999999999999999876532100 000000 0122
Q ss_pred chHHHHhhheeecccC
Q 013801 421 GSNWLMFELLWRDFFR 436 (436)
Q Consensus 421 ~~~~~~~eL~WREFyr 436 (436)
.+ +|++||+|||||+
T Consensus 304 ~~-~f~~eL~WRef~~ 318 (538)
T 3tvs_A 304 GA-HITGQLIWREYFY 318 (538)
T ss_dssp TT-TTHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHH
Confidence 33 4458999999984
No 6
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=2.1e-50 Score=429.59 Aligned_cols=285 Identities=27% Similarity=0.447 Sum_probs=225.4
Q ss_pred CCeEEEEEeCCCCccCcHHHHHHhhcCCc------eeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q 013801 123 RRASIVWFRNDLRVHDNESLNTANNESVS------VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARG 196 (436)
Q Consensus 123 ~~~~LvWfRrDLRl~DN~AL~~A~~~~~~------vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~G 196 (436)
++.+|||||||||++||+||.+|++.+.+ |+||||+|+.++.. ...+.+|+.||++||++|+++|+++|
T Consensus 28 ~~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~-----~~~~~~r~~Fl~~sL~~L~~~L~~~G 102 (543)
T 2wq7_A 28 RSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDW-----MQVGANRWRFLQQTLEDLDNQLRKLN 102 (543)
T ss_dssp CEEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGC-----TTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcc-----cCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 34569999999999999999999865444 99999999988753 25789999999999999999999999
Q ss_pred CeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCC-CCCCCCCCCCCh
Q 013801 197 SDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNY 275 (436)
Q Consensus 197 i~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~-l~~~~g~~~~~f 275 (436)
++|+|+.|++.++|.+|++++++++|+++.+|+|+++++|+.|+++|++.||+++.+++++|+++++ +.+..|++|.+|
T Consensus 103 ~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vf 182 (543)
T 2wq7_A 103 SRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITY 182 (543)
T ss_dssp CCCEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSH
T ss_pred CeEEEEeCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 445678999999
Q ss_pred hhHHHHHhhccccccchhcccCCCC--CCCCC-----CCCCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHHHH
Q 013801 276 GGFREKVKGVEIRKTIEALDQLKGL--PSRGD-----VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLK 348 (436)
Q Consensus 276 t~F~r~~~~l~~~~~~~~p~~l~~~--p~~~~-----~~~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~ 348 (436)
++|++.|++++.+.+++.+..+... |.... +....+|+++++++... . .....|+|||++|+++|+
T Consensus 183 t~F~~~~~~~~~~~p~~~p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~~-----~--~~~~~~~~Ge~~A~~~L~ 255 (543)
T 2wq7_A 183 QKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPE-----E--LGPNKFPGGETEALRRME 255 (543)
T ss_dssp HHHHHHHTTSCCCCCCCCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGG-----G--CCCCCSCCSHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCcchhccccccccccccccccccccCCCCHHHcCCCcc-----c--cccCCCCCCHHHHHHHHH
Confidence 9999999875332233333222111 00000 00023455555655432 0 112358999999999999
Q ss_pred HHHHHH--hcCCCCCCCCCCCCCCCC--CCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHH
Q 013801 349 KFAAEY--QAQPPKGNKDGNHDSIYG--ANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 424 (436)
Q Consensus 349 ~Fl~~~--l~~Y~~~~~~~~Rd~~~~--~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (436)
+||.++ +.+|.+. ||. ++ .++||+|||||+|||||||+|++++.+.+.+.. + ..++. .+
T Consensus 256 ~Fl~~~~~l~~Y~~~-----Rd~-p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~--------~--~~~~~-~~ 318 (543)
T 2wq7_A 256 ESLKDEIWVARFEKP-----NTA-PNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQP--------K--HSQPP-VS 318 (543)
T ss_dssp HHHTCHHHHHHCCGG-----GSC-SSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCS--------S--CCCTT-TS
T ss_pred HHHhCChhhhhhccc-----ccC-ccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhccc--------c--ccccH-HH
Confidence 999998 9999874 674 55 489999999999999999999999987544310 0 11233 34
Q ss_pred HHhhheeecccC
Q 013801 425 LMFELLWRDFFR 436 (436)
Q Consensus 425 ~~~eL~WREFyr 436 (436)
|++||+|||||+
T Consensus 319 f~~eL~WREf~~ 330 (543)
T 2wq7_A 319 LIGQLMWREFYY 330 (543)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 559999999985
No 7
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=2.3e-50 Score=422.56 Aligned_cols=272 Identities=23% Similarity=0.374 Sum_probs=219.3
Q ss_pred eEEEEEeCCCCccCcHHHHHHhhc-CCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEE-
Q 013801 125 ASIVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVR- 202 (436)
Q Consensus 125 ~~LvWfRrDLRl~DN~AL~~A~~~-~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~- 202 (436)
++|||||||||++||+||.+|++. +.+|+||||+||.++... ..+.+|+.||++||++|+++|+++|++|+|+
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~~~-----~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~ 76 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATH-----NMSPRQAELINAQLNGLQIALAEKGIPLLFRE 76 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCCCEEEEEEECchhhccC-----CCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 579999999999999999999983 349999999999876432 4689999999999999999999999999999
Q ss_pred ---ECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHH
Q 013801 203 ---VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR 279 (436)
Q Consensus 203 ---~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~ 279 (436)
.|++.++|.+|+++++++.|++|.+|+++++++|++|+++|.+ |+++.+++++|++++++..+.|++|++||+|+
T Consensus 77 ~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~ 154 (471)
T 1dnp_A 77 VDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFK 154 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHH
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC--cEEEEecCCEEEchhhcccCCCCCCcchHHHH
Confidence 8999999999999999999999999999999999999999976 99999999999999999988889999999999
Q ss_pred HHHhhccc---cccchhcccCCCCCCCCCCCCCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHhc
Q 013801 280 EKVKGVEI---RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356 (436)
Q Consensus 280 r~~~~l~~---~~~~~~p~~l~~~p~~~~~~~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~ 356 (436)
++|++.+. +++++.|..+. .. .+....++ ++++.. . ......|+|||++|+++|++|+.+++.
T Consensus 155 ~~~~~~l~~~~p~~~~~p~~~~---~~-~~~~~~~~---~l~~~~------~-~~~~~~~~~Ge~~A~~~L~~Fl~~~l~ 220 (471)
T 1dnp_A 155 NAWLKRLREGMPECVAAPKVRS---SG-SIEPSPSI---TLNYPR------Q-SFDTAHFPVEEKAAIAQLRQFCQNGAG 220 (471)
T ss_dssp HHHHHHHHTCCCCCCCCCCCCT---TC-CCCCCCCC---CCCSCC------C-CCCTTTSCCSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhccccCCCCCCCccccC---cc-cccCCCCc---ccCCCc------c-ccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99987532 22222221111 00 00011122 122211 1 011235899999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCc-chHHHHhhheeeccc
Q 013801 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA-GSNWLMFELLWRDFF 435 (436)
Q Consensus 357 ~Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~eL~WREFy 435 (436)
+|.+. || .|+.++||+|||||+|||||||+|++++.+...+. ..++ .+.|+ +||+|||||
T Consensus 221 ~Y~~~-----rd-~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~------------~~~~~~~~fl-~eL~WREf~ 281 (471)
T 1dnp_A 221 EYEQQ-----RD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQA------------LDGGAGSVWL-NELIWREFY 281 (471)
T ss_dssp HHHHH-----TT-CTTSCCSCCCHHHHHHTSSCHHHHHHHHHHHCGGG------------GGTSTTHHHH-HHHHHHHHH
T ss_pred Hhhhc-----cC-CcCccCCCCCCHhHcCCCcCHHHHHHHHHHHhccc------------cccccHHHHH-HHHHHHHHH
Confidence 99874 66 48888999999999999999999999998764321 0133 45677 799999998
Q ss_pred C
Q 013801 436 R 436 (436)
Q Consensus 436 r 436 (436)
+
T Consensus 282 ~ 282 (471)
T 1dnp_A 282 R 282 (471)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=2.3e-49 Score=418.95 Aligned_cols=287 Identities=20% Similarity=0.305 Sum_probs=218.8
Q ss_pred CCCCCCeEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q 013801 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSD 198 (436)
Q Consensus 119 ~~~~~~~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~ 198 (436)
+++.++.+|||||||||++||+||.+|++.+ +|+||||+||.++... ..+..+..||++||++|+++|+++|++
T Consensus 7 ~~~~~~~~l~WfrrDLRl~DN~aL~~A~~~~-~v~pvfi~dp~~~~~~-----~~~~~~~~fl~~sL~~L~~~L~~~G~~ 80 (509)
T 1u3d_A 7 GCGSGGCSIVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGHY-----HPGRVSRWWLKNSLAQLDSSLRSLGTC 80 (509)
T ss_dssp ------CEEEEESSCCCSTTCHHHHHHHHHS-CEEEEEEECGGGGTTC-----CCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCcEEEEECCCCccchhHHHHHHHhCC-CEEEEEEECchhcccC-----CcchHHHHHHHHHHHHHHHHHHHCCCe
Confidence 3556678999999999999999999999875 8999999999876531 235667779999999999999999999
Q ss_pred EEEEE-CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhh
Q 013801 199 LVVRV-GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG 277 (436)
Q Consensus 199 L~v~~-G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~ 277 (436)
|+|+. |++.++|.+|++++++++|+++.+|+|++++||++|+++|++.||+++.+++++|++++++..+.|++|++|++
T Consensus 81 L~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftp 160 (509)
T 1u3d_A 81 LITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAA 160 (509)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHH
T ss_pred EEEEeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHH
Confidence 99998 69999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHhhccc--cccchhcccCCCCCCCCCCCCCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHh
Q 013801 278 FREKVKGVEI--RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ 355 (436)
Q Consensus 278 F~r~~~~l~~--~~~~~~p~~l~~~p~~~~~~~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l 355 (436)
|++++.+... +++.+.|.. ++.. . ...++++++++.+...-.... .....|+|||++|+++|++||.+++
T Consensus 161 f~r~~~~~~~~~~~~~~~p~~---~~~~-~---~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~Ge~~A~~~L~~Fl~~~l 232 (509)
T 1u3d_A 161 FWERCLSMPYDPESPLLPPKK---IISG-D---VSKCVADPLVFEDDSEKGSNA-LLARAWSPGWSNGDKALTTFINGPL 232 (509)
T ss_dssp HHHHHHTCSSCCCCCCCCCSC---CCBT-T---GGGSSCCCCCCCCHHHHHHHT-THHHHCCCSHHHHHHHHHHHHTTGG
T ss_pred HHHHHHhccCCCCCCCCCccc---cCcc-c---cCCCChhHhCCCcccccchhh-hccccCCCcHHHHHHHHHHHHHHHH
Confidence 9999876421 111211111 1100 0 011234455543210000000 0012489999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHh-----hhhcccccCCCCCCCCCCcchHHHHhhhe
Q 013801 356 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTA-----TSISAASKWNDGESGSSGAGSNWLMFELL 430 (436)
Q Consensus 356 ~~Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~eL~ 430 (436)
.+|... ||. ++.++||+|||||+|||||||+|++++.+.. .+.. ....+.++|++||+
T Consensus 233 ~~Y~~~-----Rd~-p~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~-----------~~~~s~~~fl~eL~ 295 (509)
T 1u3d_A 233 LEYSKN-----RRK-ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNE-----------AGEESVNLFLKSIG 295 (509)
T ss_dssp GGTTTT-----TTC-SSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCH-----------HHHHHHHHHHHHHH
T ss_pred Hhhhhc-----cCC-CCCCCCCCCChhhccCCCCHHHHHHHHHHHhhhhcccccc-----------cccchHHHHHHHHH
Confidence 999874 774 7778999999999999999999999998643 1100 00122334558999
Q ss_pred eecccC
Q 013801 431 WRDFFR 436 (436)
Q Consensus 431 WREFyr 436 (436)
|||||+
T Consensus 296 WREf~~ 301 (509)
T 1u3d_A 296 LREYSR 301 (509)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999984
No 9
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=1e-47 Score=397.28 Aligned_cols=250 Identities=26% Similarity=0.393 Sum_probs=208.3
Q ss_pred eEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEEC
Q 013801 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204 (436)
Q Consensus 125 ~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G 204 (436)
++|||||||||++||+||.+|++.+ +|+||||+|+.++. . +.+|+.|+++||++|+++|+++|++|+|+.|
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~~~-~v~~vfi~d~~~~~-------~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g 73 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNLK-------T-TPRRRAWFLENVRALREAYRARGGALWVLEG 73 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHTTS-CEEEEEEECHHHHS-------S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEeCCCCCccccHHHHHHHhCC-CEEEEEEECCcccc-------C-CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6899999999999999999999776 99999999997763 3 7899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHHHHHhh
Q 013801 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG 284 (436)
Q Consensus 205 ~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~r~~~~ 284 (436)
++.++|.+++++++++.|++|.+|+++++++|++|+++| ||+++.+++++|++++. |++|.+||+|+|+|+
T Consensus 74 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i~~~~~~~~~l~~~~~-----~~~~~~~t~f~k~~~- 144 (420)
T 2j07_A 74 LPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PVPLHLLPAPHLLPPDL-----PRAYRVYTPFSRLYR- 144 (420)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SSCEEEECCCCSSCTTC-----SSCCSSHHHHHTTCC-
T ss_pred CHHHHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc---CCeEEEeCCCEEEccCC-----CCccccccHHHHHHh-
Confidence 999999999999999999999999999999999999998 99999999999999987 789999999999887
Q ss_pred ccccccchhcccCCCCCCCCCCCCCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013801 285 VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364 (436)
Q Consensus 285 l~~~~~~~~p~~l~~~p~~~~~~~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~~~~ 364 (436)
.+ ..+++.|..+ + +| +++.++.. .+ .....|+|||++|+++|++|+.+++.+|.+.
T Consensus 145 ~~-~~p~~~p~~~---~---------~p-~~~~~l~~------~~-~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~--- 200 (420)
T 2j07_A 145 GA-APPLPPPEAL---P---------KG-PEEGEIPR------ED-PGLPLPEPGEEAALAGLRAFLEAKLPRYAEE--- 200 (420)
T ss_dssp CC-CCCCCCCSSC---C---------CC-CCCCCCCC------CC-CSSCCCCCSHHHHHHHHHHHHHHTGGGHHHH---
T ss_pred hc-cCCCCCcccc---C---------CC-CccccCCC------cc-cccccCCCcHHHHHHHHHHHHHHHHhhhhhc---
Confidence 32 2333322211 0 11 11111110 01 1123589999999999999999999999874
Q ss_pred CCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHhhheeecccC
Q 013801 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436 (436)
Q Consensus 365 ~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~WREFyr 436 (436)
||. |+.++||+|||||+||+||||+|++++.+... ++.+.|+ +||+|||||+
T Consensus 201 --rd~-p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~----------------~~~~~f~-~eL~WREf~~ 252 (420)
T 2j07_A 201 --RDR-LDGEGGSRLSPYFALGVLSPRLAAWEAERRGG----------------EGARKWV-AELLWRDFSY 252 (420)
T ss_dssp --TTC-TTCTTSCCCHHHHHTTSSCHHHHHHHHHHHCS----------------HHHHHHH-HHHHHHHHHH
T ss_pred --cCC-CCccCCCCcchhhcCCccCHHHHHHHHHHHhc----------------cCHHHHH-HHHHHHHHHH
Confidence 774 78899999999999999999999999987531 2234565 8999999984
No 10
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.8e-48 Score=401.51 Aligned_cols=246 Identities=26% Similarity=0.376 Sum_probs=204.9
Q ss_pred EEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEECC
Q 013801 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGK 205 (436)
Q Consensus 126 ~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G~ 205 (436)
+|||||||||++||+||.+|++.+.+|+||||+||.++... ...+.+|+.||++||++|+++|+++|++|+|+.|+
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~----~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~ 78 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINN----PYKSEFAVSFMINSLLELDDELRKKGSRLNVFFGE 78 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSSC----TTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEESC
T ss_pred EEEEeCCCCccchhHHHHHHHhcCCCEEEEEEeChhhhccC----CcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 79999999999999999999988889999999999877532 12689999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHHHHHhhc
Q 013801 206 PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV 285 (436)
Q Consensus 206 ~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~r~~~~l 285 (436)
+.++|.+|++ +++.|+++.+|+++++++|++|+++|++.||+++.+++++|++++++ +|++||+|+++|++.
T Consensus 79 ~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~------~y~vftpf~~~~~~~ 150 (440)
T 2e0i_A 79 AEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF------HHRNFTSFYNEVSKV 150 (440)
T ss_dssp HHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC------CCSSHHHHHHHHTTS
T ss_pred HHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc------CcccCcHHHHHHHHh
Confidence 9999999999 99999999999999999999999999999999999999999999987 578999999999875
Q ss_pred cccc-c--chhcccCCCCCCCCCCCCCCCCcccccCCchhhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q 013801 286 EIRK-T--IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 362 (436)
Q Consensus 286 ~~~~-~--~~~p~~l~~~p~~~~~~~~~ip~L~~l~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~~ 362 (436)
.... + ++.+. .+|. +. .+.++ +. ....++|||++|+++|+ |+.+++..| +.
T Consensus 151 ~~~~p~~~~~~~~---~~~~-----p~---~~~~l---p~---------~~~~~~~Ge~~A~~~L~-Fl~~~l~~Y-~~- 204 (440)
T 2e0i_A 151 KVREPETMEGSFD---VTDS-----SM---NVDFL---LT---------FKKIESPLFRGGRREGL-YLLHRNVDF-RR- 204 (440)
T ss_dssp CCCCCCCCCCCBC---CCSS-----SB---CGGGG---GG---------TCCCCCTTCCCSHHHHH-HHHTCCCCG-GG-
T ss_pred cccccccCCCCcc---cCCC-----cc---hhhhC---Cc---------cccCCCCCHHHHHHHHH-HHHhhhhcC-Cc-
Confidence 1111 1 11111 1111 00 11111 10 11357999999999999 999999999 74
Q ss_pred CCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHhhheeecccC
Q 013801 363 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436 (436)
Q Consensus 363 ~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~WREFyr 436 (436)
||. |+.++||+|||||+|||||||+|++++ .+ .+.|+ +||+|||||+
T Consensus 205 ----rd~-p~~~~tS~LSPyL~~G~lSpr~v~~~~----~~-----------------~~~fl-~eL~WREf~~ 251 (440)
T 2e0i_A 205 ----RDY-PAENNNYRLSPHLKFGTISMREAYYTQ----KG-----------------KEEFV-RELYWRDFFT 251 (440)
T ss_dssp ----TTC-TTTTCCCCCHHHHHTTSSCHHHHHHHS----TT-----------------CHHHH-HHHHHHHHHH
T ss_pred ----CCC-ccccCCCCccHhHhCCCCCHHHHHHHh----cC-----------------HHHHH-HHHHHHHHHH
Confidence 774 788999999999999999999999988 11 23576 7999999984
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=3.1e-45 Score=385.91 Aligned_cols=277 Identities=18% Similarity=0.216 Sum_probs=203.6
Q ss_pred CCCeEEEEEeCCCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 013801 122 IRRASIVWFRNDLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGS 197 (436)
Q Consensus 122 ~~~~~LvWfRrDLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi 197 (436)
.++++|||||||||++||+||.+|++ .+.+|+||||+||.++. ...+.+|+.||++||.+|+++|+++|+
T Consensus 36 ~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~------~~~~~~r~~FL~~sL~dL~~~L~~lG~ 109 (506)
T 3umv_A 36 PGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFL------LSARRRQLGFLLRGLRRLAADAAARHL 109 (506)
T ss_dssp TTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCG------GGCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhc------cCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999986 46799999999998542 146899999999999999999999999
Q ss_pred eEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHH--hcCCcEEEeeCCeeeeCCCCCCCCCCCCCCh
Q 013801 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK--DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNY 275 (436)
Q Consensus 198 ~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~--~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~f 275 (436)
+|+|+.|++.++ .+|+++++|++||++.++...+++||++|+++|+ +.||+++.+++++|++++.+..+. .|.++
T Consensus 110 ~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~~v~~~~--~~~~~ 186 (506)
T 3umv_A 110 PFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM--EYSAK 186 (506)
T ss_dssp CEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHHHHCSSC--CSSHH
T ss_pred ceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcccccCCC--CCCcc
Confidence 999999999999 9999999999999977766666688999999997 689999999999999999886554 35566
Q ss_pred hhHHHHHhhccccccchhcccCCCCCCCCCCCCCCCC---cccccCCchhh-hhccCCCCCCCCCCccHHHHHHHH----
Q 013801 276 GGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIP---SLLDLGLSQSA-AMSQGGKPAANSMKGGETEALQRL---- 347 (436)
Q Consensus 276 t~F~r~~~~l~~~~~~~~p~~l~~~p~~~~~~~~~ip---~L~~l~~~~~~-~~~~~~~~~~~~~~gGe~~A~~~L---- 347 (436)
| |++++.+.......+.|. .+..... ....+ .+..+ .+.. .+... ......|+|||++|+++|
T Consensus 187 t-~~~~~~~~~~~~~~~~p~----~~~~~~~-~~~~~~~~~~~~l--~~~~~~~~~~-~~~~~~~~~Ge~~A~~~L~~~~ 257 (506)
T 3umv_A 187 T-FRGKVSKVMDEYLVEFPE----LPAVVPW-DREQPEGVDWDAL--IARVCSEAEN-VPEIDWCEPGEEAAIEALLGSK 257 (506)
T ss_dssp H-HHHHHHTTHHHHSCCCCC----CCCCCCC-CSCCCCCCCHHHH--HHHHHHTSCC-CCCCCSSCCSHHHHHHHHHCTT
T ss_pred C-HHHHHHHhccccccCCCC----CCCcccc-ccccccccChhhh--hhhhcccccc-ccccCCCCCCHHHHHHHHHhhH
Confidence 6 555554432100000010 0100000 00001 01111 0000 01101 111124689999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCC-CCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHH
Q 013801 348 KKFAAEYQAQPPKGNKDGNHDSIYGA-NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426 (436)
Q Consensus 348 ~~Fl~~~l~~Y~~~~~~~~Rd~~~~~-~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (436)
++|+.+++..|.+. ||. ++. ++||+|||||+||+||||+|++++.+..... .++.+.| +
T Consensus 258 ~~Fl~~~l~~Y~~~-----Rd~-p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~~-------------~~~~~~f-~ 317 (506)
T 3umv_A 258 DGFLTKRIKSYETD-----RND-PTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLS-------------PKSVDAF-L 317 (506)
T ss_dssp TCHHHHTGGGHHHH-----TTC-TTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGGGS-------------HHHHHHH-H
T ss_pred HHHHHhHHhhhccc-----cCC-ccccCCCccCCHHHhCCCcCHHHHHHHHHHHHhhc-------------cccHHHH-H
Confidence 99999999999864 775 555 8999999999999999999999998764321 1223345 5
Q ss_pred hhheee-cccC
Q 013801 427 FELLWR-DFFR 436 (436)
Q Consensus 427 ~eL~WR-EFyr 436 (436)
+||+|| |||+
T Consensus 318 ~eL~WRREf~~ 328 (506)
T 3umv_A 318 EELVVRRELAD 328 (506)
T ss_dssp HHHTHHHHHHH
T ss_pred HHHHHhHHHHH
Confidence 999996 9973
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=1.2e-44 Score=380.61 Aligned_cols=274 Identities=17% Similarity=0.234 Sum_probs=203.1
Q ss_pred eEEEEEeCCCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 013801 125 ASIVWFRNDLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLV 200 (436)
Q Consensus 125 ~~LvWfRrDLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~ 200 (436)
.+|||||||||++||+||.+|++ .+.+|+||||+|+.++. .+.+|+.||++||++|+++|+++|++|+
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~--------~~~~r~~Fl~~sL~~L~~~L~~~G~~L~ 109 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE--------AGIRQYEFMLKGLQELEVSLSRKKIPSF 109 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG--------SCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc--------cCHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 78999999999999999999985 35789999999998763 4789999999999999999999999999
Q ss_pred EEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHHH
Q 013801 201 VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE 280 (436)
Q Consensus 201 v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~r 280 (436)
|+.|++.++|.+|+++++|+.|+++.+|++++++++++|++.| ||+++.+++++|++++.+..+. .|++|+ |++
T Consensus 110 v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~~~~~~~~~l~~~~~~~~~~--~~~v~t-f~~ 183 (482)
T 2xry_A 110 FLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIPFFEVDAHNVVPCWEASQKH--EYAAHT-FRP 183 (482)
T ss_dssp EEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSCEEEECCSSSSCHHHHCSSC--CSSHHH-HHH
T ss_pred EEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCEEEEEeCCEEccccccccCC--CCceec-chH
Confidence 9999999999999999999999999999999999999998766 9999999999999998876654 388888 555
Q ss_pred HHhhccc--cccchhcccCCCCCCCCCC-CCCCCCc-ccccCCchh-hhhc-----cCCCCC--CCCCCccHHHHHHHHH
Q 013801 281 KVKGVEI--RKTIEALDQLKGLPSRGDV-EPGDIPS-LLDLGLSQS-AAMS-----QGGKPA--ANSMKGGETEALQRLK 348 (436)
Q Consensus 281 ~~~~l~~--~~~~~~p~~l~~~p~~~~~-~~~~ip~-L~~l~~~~~-~~~~-----~~~~~~--~~~~~gGe~~A~~~L~ 348 (436)
+|++... ..+.+.+ ...+....+ .+..++. ++.++.... +... ...... ...|+|||++|+++|+
T Consensus 184 ~~~~~~~~~~~~~p~~---~p~~~~~~lp~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ge~~A~~~L~ 260 (482)
T 2xry_A 184 KLYALLPEFLEEFPEL---EPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVME 260 (482)
T ss_dssp HHHHHHHHHCCCCCCC---CCCSSCCC---------CHHHHHHHHHHHHGGGCCBCTTSCBCCCTTSCCCSHHHHHHHHH
T ss_pred HHHHHHHhhccccCCC---CCCCCccccCCccchhhhhhhhcccCCCCCcchhhhccccccccccCCCCCcHHHHHHHHH
Confidence 5655210 0000100 011100000 0001111 111111000 0000 000000 1158999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHhh
Q 013801 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 428 (436)
Q Consensus 349 ~Fl~~~l~~Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 428 (436)
+||.+++.+|.+. ||. |+.++||+|||||+|||||||+|++++.+... ..++ .++|++|
T Consensus 261 ~Fl~~~l~~Y~~~-----Rd~-p~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~--------------~~~~-~e~fl~E 319 (482)
T 2xry_A 261 SFIADRLDSYGAL-----RND-PTKNMLSNLSPYLHFGQISSQRVVLEVEKAES--------------NPGS-KKAFLDE 319 (482)
T ss_dssp HHHHHTHHHHHHH-----TTC-TTSCCSCCCHHHHHTTSSCHHHHHHHHHHCCC--------------CTTH-HHHHHHH
T ss_pred HHHHHHHhhhccc-----cCC-CCccCCCCcCHHHhCCccCHHHHHHHHHHhhc--------------cccc-HHHHHHH
Confidence 9999999999874 774 77799999999999999999999999987521 0123 3345589
Q ss_pred he-eecccC
Q 013801 429 LL-WRDFFR 436 (436)
Q Consensus 429 L~-WREFyr 436 (436)
|+ |||||+
T Consensus 320 Li~WREf~~ 328 (482)
T 2xry_A 320 ILIWKEISD 328 (482)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 98 999974
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=99.97 E-value=8.8e-31 Score=273.98 Aligned_cols=284 Identities=17% Similarity=0.176 Sum_probs=192.7
Q ss_pred CCCCCe-EEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q 013801 120 AAIRRA-SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSD 198 (436)
Q Consensus 120 ~~~~~~-~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~ 198 (436)
++.++. .++|.--|.-..++++|..+-.. ..+|++.+..... .+...+++|+.|++.||++|+++|+++|++
T Consensus 10 ~~~~~~~~~~~ilgdQL~~~~~~~~~~~~~---~~~~~~~E~~~~~----~~~~~h~~Ki~~l~saMr~fa~~L~~~G~~ 82 (522)
T 3zxs_A 10 HGIRMLTRLILVLGDQLSDDLPALRAADPA---ADLVVMAEVMEEG----TYVPHHPQKIALILAAMRKFARRLQERGFR 82 (522)
T ss_dssp -----CCCEEECCTTCCCTTCHHHHTCCTT---TCEEEEECCHHHH----HSSCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchhhhheeEEeecccCCCccchhhhcCCC---CCEEEEEEechHh----ccCCcHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 455554 48999999999999999754222 2245566543332 124568999999999999999999999999
Q ss_pred EEEEE-------CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCC-eeeeCCCCCC--CC
Q 013801 199 LVVRV-------GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS-TLYHLDDLPF--KL 268 (436)
Q Consensus 199 L~v~~-------G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~-~Lv~p~~l~~--~~ 268 (436)
|+++. |+..+.|.+++++++++.|+++ +|++.+++++|+++ ||+++.+++. +|++++++.. +.
T Consensus 83 v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~----gi~v~~~~~~~fL~~~~e~~~~~~~ 155 (522)
T 3zxs_A 83 VAYSRLDDPDTGPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM----PLPVRFLPDDRFLCPADEFARWTEG 155 (522)
T ss_dssp EEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----SSCEEEECCCCSSSCHHHHHHHHTT
T ss_pred EEEEeccCccccCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----CCcEEEeCCCCcccCHHHHHHhhcC
Confidence 99988 8899999999999999999998 67888899888744 9999999986 7888888863 45
Q ss_pred CCCCCChhhHHHHHhhc----cc-cccchh---c--ccCCCCCCCCCCCCCC--CCc-cc-c-cCCchhhhhcc-CCCCC
Q 013801 269 GEMPTNYGGFREKVKGV----EI-RKTIEA---L--DQLKGLPSRGDVEPGD--IPS-LL-D-LGLSQSAAMSQ-GGKPA 332 (436)
Q Consensus 269 g~~~~~ft~F~r~~~~l----~~-~~~~~~---p--~~l~~~p~~~~~~~~~--ip~-L~-~-l~~~~~~~~~~-~~~~~ 332 (436)
+++|.. ++|||.|++. |. .+|++. . ++-++.|......... .|+ +. + +.... ..+.. -+...
T Consensus 156 ~k~~~m-e~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~~~~~d~~~~~v~~~v~-~~~~~~~G~~~ 233 (522)
T 3zxs_A 156 RKQLRM-EWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLRFEPDAEVRAVLDLVE-ARFPRHFGRLR 233 (522)
T ss_dssp CSSCCH-HHHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCCCCCCCHHHHHHHHHHH-HHCTTSSSCCC
T ss_pred CCCeEe-eHHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCCCCCCchhHHHHHHHHH-HhccCCcCccc
Confidence 666766 5999999852 22 234321 0 1111222211100000 000 00 0 00000 01111 12222
Q ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC----CcccCchhhhcCccCHHHHHHHHHHHhhhhcccc
Q 013801 333 ANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN----FSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 408 (436)
Q Consensus 333 ~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~~~~~~Rd~~~~~~----~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~ 408 (436)
...|++||++|+++|++||.+++.+|... ||. +..+ +||+|||||++|+||||+|++++.+...+..
T Consensus 234 ~~~~~~ge~~A~~~L~~Fl~~rl~~Y~~~-----rD~-~~~~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~~~~--- 304 (522)
T 3zxs_A 234 PFHWATDRAEALRALDHFIRESLPRFGDE-----QDA-MLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGR--- 304 (522)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHTGGGTTTT-----TTC-CBTTBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHHTTS---
T ss_pred cCCCCCCHHHHHHHHHHHHHhhhhhhhhh-----ccC-cccCCCCCCcccccHHHhCCCcCHHHHHHHHHHHHHhcC---
Confidence 35699999999999999999999999764 553 3333 6999999999999999999999987654311
Q ss_pred cCCCCCCCCCCcchHHHHhhh-eeecccC
Q 013801 409 KWNDGESGSSGAGSNWLMFEL-LWRDFFR 436 (436)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~eL-~WREFyr 436 (436)
...++.++|+ +|| +|||||+
T Consensus 305 -------~~~~~~e~fi-rellgWREF~~ 325 (522)
T 3zxs_A 305 -------APLNAVEGFI-RQILGWREYVR 325 (522)
T ss_dssp -------SCHHHHHHHH-HHHHTHHHHHH
T ss_pred -------CchhhHHHHH-HHHHHHHHHHH
Confidence 0123455677 666 6999984
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=91.05 E-value=2.8 Score=35.62 Aligned_cols=85 Identities=19% Similarity=0.093 Sum_probs=61.8
Q ss_pred CC-CccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE----EE
Q 013801 133 DL-RVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV----RV 203 (436)
Q Consensus 133 DL-Rl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v----~~ 203 (436)
|. --....+|..|.. .+..|..|+|.++... .......-..+.|..+.+.+++.|+++.+ ..
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~ 102 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR---------TKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRG 102 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT---------SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc---------ccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 55 4455666766653 3678999999886431 12333345667788888889999988754 23
Q ss_pred CChHHHHHHHHHHhCCCEEEEec
Q 013801 204 GKPETVLVELAKAIGADAVYAHR 226 (436)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~ 226 (436)
|++.+.|.+.+++.+++-|++-.
T Consensus 103 G~~~~~I~~~a~~~~~DLIV~G~ 125 (155)
T 3dlo_A 103 KEPPDDIVDFADEVDAIAIVIGI 125 (155)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCHHHHHHHHHHHcCCCEEEECC
Confidence 99999999999999999998865
No 15
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=90.54 E-value=2.2 Score=35.14 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=56.8
Q ss_pred CcHHHHHHhh----cCCceeeEEEeCCCCcCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC-----eEEEEECChH
Q 013801 138 DNESLNTANN----ESVSVLPVYCFDPRDYGKS-SSGFDKTGPYRASFLIESVSDLRKNLQARGS-----DLVVRVGKPE 207 (436)
Q Consensus 138 DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~-~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi-----~L~v~~G~~~ 207 (436)
...+|.+|.. .+..+..++|+++...... ..++............+.++.+++.+++.|+ ...+..|++.
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~ 95 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPK 95 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecChH
Confidence 4556666643 4678999999986332100 0000000011223455677777777888775 4567889999
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 013801 208 TVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e 227 (436)
+.|.+.+++.+++-|++-..
T Consensus 96 ~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 96 DKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999875
No 16
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=90.11 E-value=1.8 Score=35.77 Aligned_cols=95 Identities=11% Similarity=0.149 Sum_probs=61.0
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCC-C-CCCCHHHHHHHHHHHHHHHHHHHhCCC---eEEEEE
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSG-F-DKTGPYRASFLIESVSDLRKNLQARGS---DLVVRV 203 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~-~-~~~~~~r~~FL~esL~~L~~~L~~~Gi---~L~v~~ 203 (436)
|.--....+|.+|.. .+..+..++|+++........+ . .........-..+.|..+.+.+++.|+ ...+..
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 92 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLKTEISY 92 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEec
Confidence 444455567766653 4678999999987543210000 0 000011223345567777788888777 556778
Q ss_pred CChHHHHHH-HHHHhCCCEEEEecc
Q 013801 204 GKPETVLVE-LAKAIGADAVYAHRE 227 (436)
Q Consensus 204 G~~~~~L~~-L~~~~~a~~V~~~~e 227 (436)
|++.+.|.+ .+++.+++-|++-..
T Consensus 93 g~~~~~I~~~~a~~~~~dliV~G~~ 117 (146)
T 3s3t_A 93 GIPKHTIEDYAKQHPEIDLIVLGAT 117 (146)
T ss_dssp ECHHHHHHHHHHHSTTCCEEEEESC
T ss_pred CChHHHHHHHHHhhcCCCEEEECCC
Confidence 999999999 999999999998754
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=89.97 E-value=1.4 Score=37.14 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=58.3
Q ss_pred cCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHhCCC---eEEEEE-C
Q 013801 137 HDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGP----YRASFLIESVSDLRKNLQARGS---DLVVRV-G 204 (436)
Q Consensus 137 ~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~~----~r~~FL~esL~~L~~~L~~~Gi---~L~v~~-G 204 (436)
....+|.+|.. .+..+..++|+++..... +....+ ....-..+.|..+.+.+++.|+ ...+.. |
T Consensus 29 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g 104 (156)
T 3fg9_A 29 SSERAFRYATTLAHDYDVPLGICSVLESEDINI----FDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGG 104 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence 34456666543 467899999998754321 111111 1223345567777777888887 346677 9
Q ss_pred ChHHHHHHH-HHHhCCCEEEEecc
Q 013801 205 KPETVLVEL-AKAIGADAVYAHRE 227 (436)
Q Consensus 205 ~~~~~L~~L-~~~~~a~~V~~~~e 227 (436)
++.+.|.+. +++.+++-|++-..
T Consensus 105 ~~~~~I~~~~a~~~~~DlIV~G~~ 128 (156)
T 3fg9_A 105 DVDDVILEQVIPEFKPDLLVTGAD 128 (156)
T ss_dssp CHHHHHHHTHHHHHCCSEEEEETT
T ss_pred CHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999998 99999999998764
No 18
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=88.79 E-value=3.9 Score=33.91 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=62.6
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCC-CCCCCC--CCCHHHHHHHHHHHHHHHHHHHhCCC---eEEEE
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGK-SSSGFD--KTGPYRASFLIESVSDLRKNLQARGS---DLVVR 202 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~-~~~~~~--~~~~~r~~FL~esL~~L~~~L~~~Gi---~L~v~ 202 (436)
|.--....+|.+|.. .+..|..++|+++..... ...+.. ...........++.+.|++-.++.|+ ...+.
T Consensus 14 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLV 93 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEe
Confidence 444445667776653 467899999998643210 000000 00112223333333444444444454 46788
Q ss_pred ECChHHHHHHHHHHhCCCEEEEeccC-CchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 203 VGKPETVLVELAKAIGADAVYAHREV-SHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 203 ~G~~~~~L~~L~~~~~a~~V~~~~e~-~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
.|++.+.|.+.+++.+++-|++-..- .....-.-....+.+...++++..+
T Consensus 94 ~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 94 WGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEE
Confidence 99999999999999999999887542 1111000111233445556776543
No 19
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=86.88 E-value=2.5 Score=36.13 Aligned_cols=121 Identities=9% Similarity=0.082 Sum_probs=67.9
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHhCCC
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFD-----------KTGPYRASFLIESVSDLRKNLQARGS 197 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~-----------~~~~~r~~FL~esL~~L~~~L~~~Gi 197 (436)
|.--....+|.+|.. .+..|..|+|+++........++. ........-..+.|..+.+.+++.|+
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 92 (170)
T 2dum_A 13 DFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFR 92 (170)
T ss_dssp CSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444445567777764 356788999987643210000000 00011122334556667777776676
Q ss_pred eE----EEEECChHHHHHHHHHHhCCCEEEEeccCCchHHH--HHHHHHHHHHhcCCcEEEe
Q 013801 198 DL----VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK--SEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 198 ~L----~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~--rd~~l~~~l~~~gI~v~~~ 253 (436)
++ .+..|++.+.|.+.+++.+++-|++-..-.....+ .-....+.+...++++..+
T Consensus 93 ~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 93 AKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp CSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEE
T ss_pred ceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEE
Confidence 54 56679999999999999999999987652211110 1122233444556777644
No 20
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=86.49 E-value=5.3 Score=32.81 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=59.2
Q ss_pred cCcHHHHHHhh----cCCceeeEEEeCCCC-cCCC----CCC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCe-----EEE
Q 013801 137 HDNESLNTANN----ESVSVLPVYCFDPRD-YGKS----SSG-FDKTGPYRASFLIESVSDLRKNLQARGSD-----LVV 201 (436)
Q Consensus 137 ~DN~AL~~A~~----~~~~vl~vyi~dp~~-~~~~----~~~-~~~~~~~r~~FL~esL~~L~~~L~~~Gi~-----L~v 201 (436)
....+|.+|.. .+..+..++|.++.. +... ..+ ..........-..+.|..+.+.+++.|++ ..+
T Consensus 14 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 93 (147)
T 3hgm_A 14 GAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKVRAFV 93 (147)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEE
Confidence 34456666653 467899999988643 1000 000 00011222345566778888888888854 566
Q ss_pred EECChHHHHHHHHHHhCCCEEEEecc
Q 013801 202 RVGKPETVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 202 ~~G~~~~~L~~L~~~~~a~~V~~~~e 227 (436)
..|++.+.|.+.+++.+++-|++-..
T Consensus 94 ~~g~~~~~I~~~a~~~~~dliV~G~~ 119 (147)
T 3hgm_A 94 KGGRPSRTIVRFARKRECDLVVIGAQ 119 (147)
T ss_dssp EESCHHHHHHHHHHHTTCSEEEECSS
T ss_pred ecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 78999999999999999999998753
No 21
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=83.27 E-value=2.3 Score=36.51 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=63.7
Q ss_pred CCCccCcHHHHHHhh---cCCceeeE--EEeCCCCc-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCe---EEEEE
Q 013801 133 DLRVHDNESLNTANN---ESVSVLPV--YCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSD---LVVRV 203 (436)
Q Consensus 133 DLRl~DN~AL~~A~~---~~~~vl~v--yi~dp~~~-~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~---L~v~~ 203 (436)
|.--....+|..|.+ .+..|..| ++.++..+ .....+..........-..+-|..+.+.+++.|++ ..+..
T Consensus 25 D~s~~s~~al~~A~~lA~~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~ 104 (163)
T 1tq8_A 25 DGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIV 104 (163)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 444444556666643 45677788 88765432 10000000000000011234566777778888877 45677
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccC-CchHHHH-HHHHHHHHHhcCCcEEEe
Q 013801 204 GKPETVLVELAKAIGADAVYAHREV-SHDEVKS-EEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~e~-~p~~~~r-d~~l~~~l~~~gI~v~~~ 253 (436)
|++.+.|.+.+++.+++-|++-..- ....... -....+.+....+++..+
T Consensus 105 G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 105 GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEE
Confidence 9999999999999999999987652 2222211 112233344556777643
No 22
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=78.82 E-value=14 Score=29.96 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=48.2
Q ss_pred cCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHhCCC---eEEEEECChH
Q 013801 137 HDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGF--DKTGPYRASFLIESVSDLRKNLQARGS---DLVVRVGKPE 207 (436)
Q Consensus 137 ~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~--~~~~~~r~~FL~esL~~L~~~L~~~Gi---~L~v~~G~~~ 207 (436)
....+|.+|.. .+..+..++|.++..... .++ .........-..+.|..+.+. .|+ ...+..|++.
T Consensus 14 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~g~~~ 88 (137)
T 2z08_A 14 HARRAAEVAKAEAEAHGARLIVVHAYEPVPDYL--GEPFFEEALRRRLERAEGVLEEARAL---TGVPKEDALLLEGVPA 88 (137)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHH---HCCCGGGEEEEESSHH
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEEecCCCccc--cccchHHHHHHHHHHHHHHHHHHHHH---cCCCccEEEEEecCHH
Confidence 34456666543 467888999988532110 000 000000111122223333222 455 5677899999
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 013801 208 TVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e 227 (436)
+.|.+.+++.+++-|++-..
T Consensus 89 ~~I~~~a~~~~~dliV~G~~ 108 (137)
T 2z08_A 89 EAILQAARAEKADLIVMGTR 108 (137)
T ss_dssp HHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHcCCCEEEECCC
Confidence 99999999999999998764
No 23
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=78.25 E-value=3.6 Score=38.54 Aligned_cols=97 Identities=19% Similarity=0.090 Sum_probs=55.9
Q ss_pred HHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE--CC---hHHHHHHHH
Q 013801 140 ESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV--GK---PETVLVELA 214 (436)
Q Consensus 140 ~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~--G~---~~~~L~~L~ 214 (436)
.+++.|.+.+..|++++..-+...+ +..|....+...+..-+.+|+++++.. |. -.+.+.+++
T Consensus 19 ~al~~l~~~G~eV~~L~~~~~~~~~------------s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l 86 (237)
T 3rjz_A 19 YALYWAIKNRFSVKFLVTMVSENEE------------SYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVL 86 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEECC--------------------CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCC------------ccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHH
Confidence 5677777788778887654332211 111111223344455567799999875 32 346667777
Q ss_pred HHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 215 KAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 215 ~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
++.+++.|++-.=...|.+.|. .+.|.+.|+.+.
T Consensus 87 ~~~~i~~vv~Gdi~s~yqr~r~---e~vc~~~gl~~~ 120 (237)
T 3rjz_A 87 SGLKIQGIVAGALASKYQRKRI---EKVAKELGLEVY 120 (237)
T ss_dssp TTSCCSEEECC---CCSHHHHH---HHHHHHTTCEEE
T ss_pred HhcCCcEEEECCcchHHHHHHH---HHHHHHcCCEEE
Confidence 7789999998876666666554 455666677765
No 24
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=75.02 E-value=25 Score=28.32 Aligned_cols=87 Identities=8% Similarity=0.040 Sum_probs=52.8
Q ss_pred CcHHHHHHhh-----cCCceeeEEEeCCCCcCCCCCCCC--CCCHHHH-HHHHHHHHHHHHHHHhCCCe--EEEEECChH
Q 013801 138 DNESLNTANN-----ESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRA-SFLIESVSDLRKNLQARGSD--LVVRVGKPE 207 (436)
Q Consensus 138 DN~AL~~A~~-----~~~~vl~vyi~dp~~~~~~~~~~~--~~~~~r~-~FL~esL~~L~~~L~~~Gi~--L~v~~G~~~ 207 (436)
...+|.+|.. .+..+..++|.++...... .+.. ....... .-..+.|..+.+.+++.|++ ..+..|++.
T Consensus 14 s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~ 92 (138)
T 3idf_A 14 CERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE-AVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGEPV 92 (138)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEESCHH
T ss_pred HHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc-cccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCChH
Confidence 3455555542 3557889999887542100 0000 0000001 23345667777778877776 566789999
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 013801 208 TVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e 227 (436)
+.|.+.++ +++-|++-..
T Consensus 93 ~~I~~~a~--~~dliV~G~~ 110 (138)
T 3idf_A 93 EMVLEEAK--DYNLLIIGSS 110 (138)
T ss_dssp HHHHHHHT--TCSEEEEECC
T ss_pred HHHHHHHh--cCCEEEEeCC
Confidence 99999998 9999988653
No 25
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=73.76 E-value=24 Score=28.49 Aligned_cols=115 Identities=14% Similarity=0.038 Sum_probs=63.8
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCC-CCcCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHhCCCe---EE
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDP-RDYGKSSSGFDKTGPYRAS----FLIESVSDLRKNLQARGSD---LV 200 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp-~~~~~~~~~~~~~~~~r~~----FL~esL~~L~~~L~~~Gi~---L~ 200 (436)
|.--....+|.+|.. .+..+..++|.++ ..... ++ ....... ..-++.+.|++-+++.|++ ..
T Consensus 10 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (141)
T 1jmv_A 10 DLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT---GL--IDVNMSSMQDRISTETQKALLDLAESVDYPISEKL 84 (141)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCC---CC--EEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEE
T ss_pred cCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhc---cc--cccchHHHHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 443444566766653 4678889999842 21110 00 0000000 0112223333444455664 46
Q ss_pred EEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 201 VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 201 v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
+..|++.+.|.+.+++.+++-|++-.. .....+.-....+.+...++++..+
T Consensus 85 ~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 85 SGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp EEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCCHHHHHHHHHHhcCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEe
Confidence 678999999999999999999998876 4333333333344455567777644
No 26
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=73.25 E-value=15 Score=32.26 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEecc-------------CCchHHHHHHHHHHHHHhcC
Q 013801 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE-------------VSHDEVKSEEKIEAAMKDEG 247 (436)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e-------------~~p~~~~rd~~l~~~l~~~g 247 (436)
+.++.++-+.|++.|+++.|..+.....+..+++..|+..++.+.- .......--+.+...+++.|
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~~~ 172 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMG 172 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHHcC
Confidence 5677888888999999999999999999999999999987765421 11122223345667777777
No 27
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=72.77 E-value=61 Score=30.11 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=68.1
Q ss_pred cHHHHHHh----hc--CCceeeEEEeCCCCcCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHhCCC---eEEEEECChH
Q 013801 139 NESLNTAN----NE--SVSVLPVYCFDPRDYGKSSSGFDKTG--PYRASFLIESVSDLRKNLQARGS---DLVVRVGKPE 207 (436)
Q Consensus 139 N~AL~~A~----~~--~~~vl~vyi~dp~~~~~~~~~~~~~~--~~r~~FL~esL~~L~~~L~~~Gi---~L~v~~G~~~ 207 (436)
..+|..|. .. +..|..|+|+++...... .+..... ........+..+.|++-+++.|+ ...+..|++.
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~ 255 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIA-IELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLPE 255 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCC-TTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhhh-ccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCcH
Confidence 55666664 23 678899999987543210 0000011 12223344445555555667775 4778899999
Q ss_pred HHHHHHHHHhCCCEEEEecc-CCchHHHH-HHHHHHHHHhcCCcEEEee
Q 013801 208 TVLVELAKAIGADAVYAHRE-VSHDEVKS-EEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e-~~p~~~~r-d~~l~~~l~~~gI~v~~~~ 254 (436)
+.|.+.+++.+++-|++-.. -....... -....+.+....+++-.+.
T Consensus 256 ~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~ 304 (319)
T 3olq_A 256 QVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIK 304 (319)
T ss_dssp HHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEEC
Confidence 99999999999999988763 22222222 2333444556677776544
No 28
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=71.38 E-value=50 Score=30.48 Aligned_cols=103 Identities=12% Similarity=0.160 Sum_probs=67.7
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeE--EEEECCh
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDL--VVRVGKP 206 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L--~v~~G~~ 206 (436)
|..-....+|..|.. .+..|..++|.++.. -.+.+.++.+.|++.|++. .+..|++
T Consensus 178 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------------------~~~~l~~~~~~l~~~~~~~~~~~~~g~~ 239 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------------------KTADLRVMEEVIGAEGIEVHVHIESGTP 239 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------------------CHHHHHHHHHHHHHTTCCEEEEEECSCH
T ss_pred CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------------------HHHHHHHHHHHHHHcCCcEEEEEecCCH
Confidence 665566677777753 356788899887532 1234667777888888774 4557999
Q ss_pred HHHHHHHHHHhCCCEEEEeccC-CchHHH-HHHHHHHHHHhcCCcEEEe
Q 013801 207 ETVLVELAKAIGADAVYAHREV-SHDEVK-SEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 207 ~~~L~~L~~~~~a~~V~~~~e~-~p~~~~-rd~~l~~~l~~~gI~v~~~ 253 (436)
.+.|.+++++.+++-|++-..- ...... .-....+.+....+++-.+
T Consensus 240 ~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 240 HKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEE
Confidence 9999999999999998886532 222221 2223344455667777643
No 29
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=71.05 E-value=25 Score=32.60 Aligned_cols=84 Identities=8% Similarity=0.055 Sum_probs=50.3
Q ss_pred cHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHhCCC---eEEEEECChHHHH
Q 013801 139 NESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTG-PYRASFLIESVSDLRKNLQARGS---DLVVRVGKPETVL 210 (436)
Q Consensus 139 N~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~-~~r~~FL~esL~~L~~~L~~~Gi---~L~v~~G~~~~~L 210 (436)
..+|..|.. .+..+..++|+++...... ... ........+....|++-+++.|+ ...+..|++.+.|
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I 229 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSA-----DPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLI 229 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC--------------CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCcccccc-----CchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHH
Confidence 556666643 4678889999886433210 000 11112222333444444445565 4678899999999
Q ss_pred HHHHHHhCCCEEEEecc
Q 013801 211 VELAKAIGADAVYAHRE 227 (436)
Q Consensus 211 ~~L~~~~~a~~V~~~~e 227 (436)
.+++++.+++-|++-..
T Consensus 230 ~~~a~~~~~dLiVmG~~ 246 (290)
T 3mt0_A 230 PRTAQKLDAVVTVIGTV 246 (290)
T ss_dssp HHHHHHHTCSEEEEECC
T ss_pred HHHHHhcCCCEEEECCC
Confidence 99999999999988753
No 30
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=70.10 E-value=51 Score=30.44 Aligned_cols=109 Identities=12% Similarity=0.111 Sum_probs=65.5
Q ss_pred HHHhhcCCceeeEEEeCCCCcCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHhCCCeEEE---E-ECChHHHHHHHHH
Q 013801 143 NTANNESVSVLPVYCFDPRDYGKSSSGFDKTG---PYRASFLIESVSDLRKNLQARGSDLVV---R-VGKPETVLVELAK 215 (436)
Q Consensus 143 ~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~---~~r~~FL~esL~~L~~~L~~~Gi~L~v---~-~G~~~~~L~~L~~ 215 (436)
..|...+..|..++|.++........+. ... .....-..+.|..+.+.+++.|++... . .|++.+.| .++
T Consensus 44 ~lA~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~ 120 (294)
T 3loq_A 44 DFKKVGVEEIGVLFVINLTKLSTVSGGI-DIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKA 120 (294)
T ss_dssp HHHHTTCCEEEEECCEECTTC-----CC-CTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHH
T ss_pred HHHhhcCCEEEEEEEecCcccccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eec
Confidence 3343456788899998765432110110 011 112234456778888888889998875 4 79999998 889
Q ss_pred HhCCCEEEEeccCCchHHHH--HHHHHHHHHhcCCcEEEee
Q 013801 216 AIGADAVYAHREVSHDEVKS--EEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 216 ~~~a~~V~~~~e~~p~~~~r--d~~l~~~l~~~gI~v~~~~ 254 (436)
+.+++-|++-..-.....+. -....+.+...++++..+.
T Consensus 121 ~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~ 161 (294)
T 3loq_A 121 SENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFK 161 (294)
T ss_dssp HTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEEC
T ss_pred cCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEec
Confidence 99999999976533221111 1223445566678876544
No 31
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=62.47 E-value=26 Score=29.09 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=58.4
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCCC-----CcCCCC-CC--CCCCC-----HH---HHHHHHHHHHHHHHHH
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPR-----DYGKSS-SG--FDKTG-----PY---RASFLIESVSDLRKNL 192 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~-----~~~~~~-~~--~~~~~-----~~---r~~FL~esL~~L~~~L 192 (436)
|.--....+|.+|.+ .+..|..++|+++. .+.... .+ +.... .. ...-..+.|..+.+.+
T Consensus 13 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (162)
T 1mjh_A 13 DFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL 92 (162)
T ss_dssp CSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445567877764 25678899998764 110000 00 00000 00 1122344567777778
Q ss_pred HhCCCeE--EEEECChHHHHHHHHHHhCCCEEEEecc
Q 013801 193 QARGSDL--VVRVGKPETVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 193 ~~~Gi~L--~v~~G~~~~~L~~L~~~~~a~~V~~~~e 227 (436)
+..|+++ .+..|++.+.|.+.+++.+++-|++-..
T Consensus 93 ~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~ 129 (162)
T 1mjh_A 93 EDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSH 129 (162)
T ss_dssp HHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred HHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCC
Confidence 8888875 4567999999999999999999988764
No 32
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=61.68 E-value=33 Score=29.72 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHH----hCCCeEEEEECChHHHHHHHHHH--hCCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 182 IESVSDLRKNLQ----ARGSDLVVRVGKPETVLVELAKA--IGADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 182 ~esL~~L~~~L~----~~Gi~L~v~~G~~~~~L~~L~~~--~~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
..+|.++.+.|+ +.|+.+.++..+.+..|.+.+.+ .+++.|+.|- -|+.+.+..-..++. +..-++++..++
T Consensus 28 ~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~-l~~~~~P~VEVH 106 (151)
T 3u80_A 28 RQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHM-VIDENLPLMEVH 106 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHH-HhhcCCCEEEEE
Confidence 356666666665 47999999987777666665543 2366777776 677777754444321 444689998887
Q ss_pred CCeeeeCC
Q 013801 255 GSTLYHLD 262 (436)
Q Consensus 255 ~~~Lv~p~ 262 (436)
-.+++..+
T Consensus 107 iSNi~aRE 114 (151)
T 3u80_A 107 ISNPSARD 114 (151)
T ss_dssp SSCCC---
T ss_pred cCCccccc
Confidence 66665543
No 33
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=59.89 E-value=54 Score=27.56 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCeE--EEEECChHHHHHHHHHHhCCCEEEEeccCCch-HHH-HHHHHHHHHHhcCCcEEEee
Q 013801 182 IESVSDLRKNLQARGSDL--VVRVGKPETVLVELAKAIGADAVYAHREVSHD-EVK-SEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L--~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~-~~~-rd~~l~~~l~~~gI~v~~~~ 254 (436)
.+.|..+.+.+++.|+.+ .+..|++.+.|.+.+++.+++-|++-..-... ... .-....+.+...++++..+.
T Consensus 86 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~ 162 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162 (175)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEc
Confidence 345666777777778775 45679999999999999999999987642211 111 12223344555677776543
No 34
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=58.39 E-value=56 Score=28.03 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCC
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~ 262 (436)
+.+++.-++.|+.+.++..+.+..|.+.+.+. +++.|+.|. -|+...+ .+++++..-++++..++-.+++..+
T Consensus 32 ~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 107 (143)
T 1gqo_A 32 TDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY----AIRDAVSSISLPVVEVHLSNLYARE 107 (143)
T ss_dssp HHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 33444445679999999988877777766553 477888876 5666666 5566667778999998877776655
Q ss_pred C
Q 013801 263 D 263 (436)
Q Consensus 263 ~ 263 (436)
.
T Consensus 108 ~ 108 (143)
T 1gqo_A 108 E 108 (143)
T ss_dssp G
T ss_pred c
Confidence 4
No 35
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=57.09 E-value=49 Score=28.34 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=57.4
Q ss_pred ceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-------------CChHHHHHHHHHHh
Q 013801 151 SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV-------------GKPETVLVELAKAI 217 (436)
Q Consensus 151 ~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~-------------G~~~~~L~~L~~~~ 217 (436)
-++|-||++.=+.-+ ..+..+-+.-++-|+.|++.-++.++++.+.. |+.-..+.++|++.
T Consensus 32 iiIP~~Vl~EL~~~a------~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~ 105 (142)
T 3i8o_A 32 IIIPEAVVSELEYQA------NMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKET 105 (142)
T ss_dssp EEEEHHHHHHHHHHH------TTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHT
T ss_pred EEehHHHHHHHHHHH------HccchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHh
Confidence 456888876422211 12344556667777888776667899998764 34567788999998
Q ss_pred CCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 218 GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 218 ~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
++. |+++ |..+.+.++..||++...
T Consensus 106 ~a~-lvTn----------D~~l~kvA~~~GI~V~~l 130 (142)
T 3i8o_A 106 NSI-LLTS----------DWIQYNLAKAQGIEAYFL 130 (142)
T ss_dssp TCE-EEES----------CHHHHHHHHHTTCCEEEC
T ss_pred CCE-EEcC----------CHHHHHHHHHcCCEEEEe
Confidence 853 4444 346677777889999864
No 36
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=57.09 E-value=68 Score=27.69 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHh--C-CCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeC
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAI--G-ADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~-a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p 261 (436)
+.+++.-++.|+.+.++..+.+..|.+.+.+. + ++.|+.|. -|+.+.+ .+++++..-++++..++-.+++..
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aR 106 (149)
T 2uyg_A 31 ALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSY----ALLDAIRAQPLPVVEVHLTNLHAR 106 (149)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGS
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCcccc
Confidence 44445556779999999988887777777654 2 66888886 5666666 556677777899999887777654
Q ss_pred CC
Q 013801 262 DD 263 (436)
Q Consensus 262 ~~ 263 (436)
+.
T Consensus 107 E~ 108 (149)
T 2uyg_A 107 EE 108 (149)
T ss_dssp CG
T ss_pred cc
Confidence 43
No 37
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=56.21 E-value=52 Score=28.55 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCC
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~ 262 (436)
+.+++.-++.|+.+.++..+.+..|.+.+.+. +++.|+.|. -|+.+.+ .+++++..-++++..++-.+++..+
T Consensus 33 ~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 108 (154)
T 1uqr_A 33 QHLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSV----AIRDALLAVSIPFIEVHLSNVHARE 108 (154)
T ss_dssp HHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCH----HHHHHHHHHTCCEEEEESSCGGGSC
T ss_pred HHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 44444556779999999988887777777654 477888876 3444544 4566666668999988877666544
No 38
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=55.14 E-value=61 Score=30.57 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--Ch---HHHHHHHHHH-hCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KP---ETVLVELAKA-IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~---~~~L~~L~~~-~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
|+.+-+..+++.+++.|..+.+... +. .+.+..++.. .+++.|++..+.. . ...+.+.+.+.||++..+
T Consensus 18 f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~-~----~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 18 FWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY-V----APQILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS-H----HHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh-h----HHHHHHHHHhCCCcEEEE
Confidence 6667777788888899999988764 33 3445566665 6899988864211 1 223445667789999987
Q ss_pred eCC
Q 013801 254 WGS 256 (436)
Q Consensus 254 ~~~ 256 (436)
+..
T Consensus 93 ~~~ 95 (350)
T 3h75_A 93 NSP 95 (350)
T ss_dssp ESC
T ss_pred cCC
Confidence 754
No 39
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=54.07 E-value=56 Score=28.71 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=48.1
Q ss_pred HhCCCeEEEEECChHHHHHHHHHH---hCCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCC
Q 013801 193 QARGSDLVVRVGKPETVLVELAKA---IGADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263 (436)
Q Consensus 193 ~~~Gi~L~v~~G~~~~~L~~L~~~---~~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~ 263 (436)
.+.|+.+.++..+.+..|.+.+.+ .+++.|+.|. -|+.+.+ .+++++..-++++..++-.+++..+.
T Consensus 55 ~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~ 125 (167)
T 3kip_A 55 KNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSV----GIRDALLGTAIPFIEVHITNVHQREP 125 (167)
T ss_dssp TCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCH----HHHHHHHHTTCCEEEEESSCGGGSCG
T ss_pred ccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccH----HHHHHHHhcCCCEEEEEcCCcccccc
Confidence 457899999998877777766654 3588888886 5555655 45556666789999988777766554
No 40
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=54.03 E-value=66 Score=27.90 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=51.0
Q ss_pred HHHHHHHHH----HhCCCeEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCC
Q 013801 184 SVSDLRKNL----QARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256 (436)
Q Consensus 184 sL~~L~~~L----~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~ 256 (436)
+|.++.+.| .+.|+.+.++..+.+..|.+.+.+. +++.|+.|. -|+...+ .+++++..-++++..++-.
T Consensus 33 Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~~~~P~VEVHiS 108 (153)
T 3lwz_A 33 TLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSV----ALRDALLGVQIPFIEIHLS 108 (153)
T ss_dssp CHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHHHTCCEEEEESS
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechH----HHHHHHHhcCCCEEEEEcC
Confidence 344444444 4589999999988777777766553 477888886 5566666 4455555568999988877
Q ss_pred eeeeCC
Q 013801 257 TLYHLD 262 (436)
Q Consensus 257 ~Lv~p~ 262 (436)
+++..+
T Consensus 109 Ni~aRE 114 (153)
T 3lwz_A 109 NVHARE 114 (153)
T ss_dssp CGGGSC
T ss_pred Cccccc
Confidence 766544
No 41
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=53.99 E-value=58 Score=29.86 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEECC---hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 179 SFLIESVSDLRKNLQARGSDLVVRVGK---PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 179 ~FL~esL~~L~~~L~~~Gi~L~v~~G~---~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
.|+.+-+..+++.+++.|..+.+...+ ....+.+++...+++.|++....... ...+.+.+.||++..++.
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 23 STFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC------HHHHHHHHTTCCEEEESC
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHhCCCCEEEECC
Confidence 377777888899999999999887532 33456667777799999886432211 223456678999998775
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 97 ~ 97 (294)
T 3qk7_A 97 S 97 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 42
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=53.31 E-value=85 Score=28.25 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC--hH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK--PE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~--~~--~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|++..... + ...+.+.+.||++..++.
T Consensus 21 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~-~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 21 FSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------P-QTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------H-HHHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------H-HHHHHHHHCCCCEEEEec
Confidence 66777788899999999999987643 22 1233344456899998865332 2 233456678999988764
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 94 ~ 94 (276)
T 3jy6_A 94 E 94 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 43
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=52.92 E-value=33 Score=33.36 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEe
Q 013801 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~ 225 (436)
+-+..+++-|+..|++.++..+++.+.+..|++.-.+..|++.
T Consensus 130 ~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~ 172 (340)
T 1b43_A 130 MLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQ 172 (340)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEcc
Confidence 4456678888888999998888888888888886555555443
No 44
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=52.43 E-value=59 Score=27.96 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCC
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~ 262 (436)
+.+++.-++.|+.+.++..+.+..|.+.+.+. +++.|+.|. -|+.+.+ .+++++..-++++..++-.+++..+
T Consensus 34 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 109 (146)
T 1h05_A 34 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHARE 109 (146)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHHTCCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 34444445779999999877776666655432 366777775 5666666 5566777779999998877776654
Q ss_pred C
Q 013801 263 D 263 (436)
Q Consensus 263 ~ 263 (436)
.
T Consensus 110 ~ 110 (146)
T 1h05_A 110 E 110 (146)
T ss_dssp G
T ss_pred c
Confidence 3
No 45
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=51.96 E-value=78 Score=28.62 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--Ch---HHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KP---ETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~---~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|..+-+..+++.+++.|..+.+... +. .+.+..+. ..+++.|++... .....+ ...+.+.+.||++..++
T Consensus 19 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~---~~~~~~-~~~~~~~~~~iPvV~~~ 93 (291)
T 3l49_A 19 WDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLI-AQKPDAIIEQLG---NLDVLN-PWLQKINDAGIPLFTVD 93 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HHCCSEEEEESS---CHHHHH-HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCC---ChhhhH-HHHHHHHHCCCcEEEec
Confidence 6667788889999999999998863 32 23333333 468999987532 111122 33455677899999887
Q ss_pred CC
Q 013801 255 GS 256 (436)
Q Consensus 255 ~~ 256 (436)
..
T Consensus 94 ~~ 95 (291)
T 3l49_A 94 TA 95 (291)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 46
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=48.49 E-value=74 Score=27.08 Aligned_cols=72 Identities=13% Similarity=0.001 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhCCCeEE---EEECChHHHHHHHHHHhC--CCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 181 LIESVSDLRKNLQARGSDLV---VRVGKPETVLVELAKAIG--ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 181 L~esL~~L~~~L~~~Gi~L~---v~~G~~~~~L~~L~~~~~--a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
-.+.|..--..|+..|+... +..++|...|.+.+.+++ ++.|+.-...-.-+..+..-+....++.|+++.-
T Consensus 56 A~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~~gvPVlh 132 (138)
T 2iel_A 56 AEEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPVIH 132 (138)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGGGSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHhcCCCEEE
Confidence 34566666677788898876 778999999999999999 9988777654444444444555555667888854
No 47
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=47.51 E-value=65 Score=28.43 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=50.2
Q ss_pred HHHHHHHHH----HhCCCeEEEEECChHHHHHHHHHH--hCCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCC
Q 013801 184 SVSDLRKNL----QARGSDLVVRVGKPETVLVELAKA--IGADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256 (436)
Q Consensus 184 sL~~L~~~L----~~~Gi~L~v~~G~~~~~L~~L~~~--~~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~ 256 (436)
+|.++.+.| .+.|+.+.++..+.+..|.+.+.+ .+++.|+.|. .|+...+ .|++++..-++++..++-.
T Consensus 54 TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv----AlrDAL~~v~~P~VEVHiS 129 (172)
T 3n8k_A 54 THDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHIS 129 (172)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHTTCCSCEEEEESS
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH----HHHHHHHhCCCCEEEEEcC
Confidence 444444444 458999999987777666665543 2467777776 5565655 5566677778999988766
Q ss_pred eeeeCC
Q 013801 257 TLYHLD 262 (436)
Q Consensus 257 ~Lv~p~ 262 (436)
+++..+
T Consensus 130 NihaRE 135 (172)
T 3n8k_A 130 NVHARE 135 (172)
T ss_dssp CTTSSC
T ss_pred Cchhcc
Confidence 665544
No 48
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=47.22 E-value=66 Score=27.97 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHHHhcC-CcEEEeeCCeeeeC
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEG-IEVKYFWGSTLYHL 261 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~g-I~v~~~~~~~Lv~p 261 (436)
+.+++.-++.|+.+.++..+.+..|.+.+.+. +++.|+.|- -|+.+.+ .+++++..-+ +++..++-.+++..
T Consensus 38 ~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv----AlrDAl~~v~~~P~VEVHiSNi~aR 113 (156)
T 1gtz_A 38 ALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSV----AILDALNTCDGLPVVEVHISNIHQR 113 (156)
T ss_dssp HHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCH----HHHHHHHTSTTCCEEEEESSCGGGS
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhcCCCCEEEEEecCcccc
Confidence 33444445679999999877776666665432 478888886 3444444 5566666667 99998887776654
Q ss_pred C
Q 013801 262 D 262 (436)
Q Consensus 262 ~ 262 (436)
+
T Consensus 114 E 114 (156)
T 1gtz_A 114 E 114 (156)
T ss_dssp C
T ss_pred c
Confidence 4
No 49
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=46.97 E-value=96 Score=27.48 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEE--CChHHHHHHHHHHh--CCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 183 ESVSDLRKNLQARGSDLVVRV--GKPETVLVELAKAI--GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~--G~~~~~L~~L~~~~--~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
+++.-++..+++.|-.++|-. |-...++..++.+. .+..|+++..+.+.+ ..+.+++.|++.||+++.+.
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~e--~~~~v~~~~~~~gi~~~v~~ 104 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPE--TYRFIDELTDKLKLNLKVYR 104 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHH--HHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCHH--HHHHHHHHHHHhCCcEEEEe
Confidence 345566777777776776654 55666777788775 466777777665433 25667788888999998664
No 50
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=46.60 E-value=1.7e+02 Score=26.98 Aligned_cols=120 Identities=11% Similarity=-0.003 Sum_probs=71.2
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCCHH-HHH-------HHHHHHHHHHHHHHhCCCeEE
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPY-RAS-------FLIESVSDLRKNLQARGSDLV 200 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~~~-r~~-------FL~esL~~L~~~L~~~Gi~L~ 200 (436)
|.--....+|.+|+. .+.+|..++++++..+... + ..+.. ... -..+.|+.+.+.++..|+.+.
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~ 90 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMT--T--LLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQID 90 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCT--T--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhc--c--ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEE
Confidence 666666778877753 4678888998764222110 0 11111 111 123455666666777787764
Q ss_pred --EE-ECChHHHHHHHHHHhCCCEEEEeccCCchHHH--HHHHHHHHHHhcCCcEEEeeCC
Q 013801 201 --VR-VGKPETVLVELAKAIGADAVYAHREVSHDEVK--SEEKIEAAMKDEGIEVKYFWGS 256 (436)
Q Consensus 201 --v~-~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~--rd~~l~~~l~~~gI~v~~~~~~ 256 (436)
+. .|++.+.|.+.+++.+++-|++-..-.....+ .-....+.+...++++..+...
T Consensus 91 ~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 91 IKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred EEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 44 79999999999999999999887643211000 1122344455678888776543
No 51
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=45.63 E-value=38 Score=29.92 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=39.7
Q ss_pred HHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCC
Q 013801 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (436)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI 248 (436)
+.|++.|+.+.|..|+....+..++++.|+..++... .+. -..+...+++.|+
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~--k~k----~~~~~~~~~~~~~ 114 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQ--DDK----VQAYYDICQKLAI 114 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSC--SSH----HHHHHHHHHHHCC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCC--CCc----HHHHHHHHHHhCC
Confidence 4577899999999999999999999999999887654 222 2344555665565
No 52
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=45.49 E-value=37 Score=27.09 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEC--ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 183 ESVSDLRKNLQARGSDLVVRVG--KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G--~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
+.|+.++.-+++.|..+..... +-.+.+.+|+++++++.|+.--+ ...+-++.-.+.+..|..+.
T Consensus 13 etlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvd----dkewaekairfvkslgaqvl 79 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVD----DKEWAEKAIRFVKSLGAQVL 79 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECS----SHHHHHHHHHHHHHHCCCCE
T ss_pred HHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEc----cHHHHHHHHHHHHhcCCeEE
Confidence 5678888888999998877664 34688999999999998776532 22222222345555565543
No 53
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=45.17 E-value=31 Score=29.61 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=39.0
Q ss_pred HHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCC
Q 013801 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (436)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI 248 (436)
+-+.|++.|+.+.+..|+....+..+++..|+. ++... .+. -..+...+++.|+
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~--~~k----~~~l~~~~~~~~~ 100 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHGI--DRK----DLALKQWCEEQGI 100 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESC--SCH----HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCC--CCh----HHHHHHHHHHcCC
Confidence 456778899999999999989999999999999 55443 222 2344555555565
No 54
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=45.15 E-value=73 Score=28.98 Aligned_cols=71 Identities=17% Similarity=0.096 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC----ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G----~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-+..+++.+++.|..+.+... +....+.+++...+++.|++....... ...+.+.+.||++..++.
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 24 FTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND------PRVRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc------HHHHHHhhCCCCEEEECC
Confidence 6777788889999999999988752 123456666777899998875422111 123455678999988765
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 98 ~ 98 (288)
T 3gv0_A 98 S 98 (288)
T ss_dssp C
T ss_pred c
Confidence 4
No 55
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=43.76 E-value=1.1e+02 Score=25.21 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCc
Q 013801 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (436)
Q Consensus 187 ~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~ 249 (436)
++=+.|++.|+++.+..|.....+..+++..|+..++... -|. ...+...+++.|+.
T Consensus 43 ~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~--kp~----~~~~~~~~~~~~~~ 99 (162)
T 2p9j_A 43 IGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTGS--YKK----LEIYEKIKEKYSLK 99 (162)
T ss_dssp HHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEECC----C----HHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccCC--CCC----HHHHHHHHHHcCCC
Confidence 4445567889999999999888899999999998766432 122 22344555555653
No 56
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=43.37 E-value=1e+02 Score=27.59 Aligned_cols=69 Identities=9% Similarity=0.084 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC--hH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHH-HHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK--PE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA-AMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~--~~--~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~-~l~~~gI~v~~~~ 254 (436)
|..+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|++.. . . +.. .+ .+.+.|+++..++
T Consensus 22 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~-~--~----~~~-~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 22 FFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA-F--N----ENI-IENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG-G--G----HHH-HHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec-C--C----hHH-HHHHHHcCCCCEEEEe
Confidence 66777788889999999999887632 22 2233444557899998854 1 1 122 34 6677899999876
Q ss_pred CC
Q 013801 255 GS 256 (436)
Q Consensus 255 ~~ 256 (436)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 54
No 57
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=43.12 E-value=91 Score=27.60 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHHHHHH--hCCCeEEEEECChHHHHHHHHHHh--C-CCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCCeee
Q 013801 186 SDLRKNLQ--ARGSDLVVRVGKPETVLVELAKAI--G-ADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLY 259 (436)
Q Consensus 186 ~~L~~~L~--~~Gi~L~v~~G~~~~~L~~L~~~~--~-a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv 259 (436)
+.+++.-+ +.|+.+.++..+.+..|.+.+.+. + ++.|+.|- -|+.+.+ .|++++..-++++..++-.+++
T Consensus 41 ~~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSv----AlrDAl~~v~~P~VEVHiSNi~ 116 (176)
T 2c4w_A 41 EIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSI----AIADAIMLAGKPVIEVHLTNIQ 116 (176)
T ss_dssp HHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCH----HHHHHHHTSSSCEEEEESSCGG
T ss_pred HHHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCcc
Confidence 34444455 678999999888777776666543 2 77888886 5666666 5566777779999998877776
Q ss_pred eCCC
Q 013801 260 HLDD 263 (436)
Q Consensus 260 ~p~~ 263 (436)
..+.
T Consensus 117 aRE~ 120 (176)
T 2c4w_A 117 AREE 120 (176)
T ss_dssp GSCG
T ss_pred cccc
Confidence 6543
No 58
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=42.93 E-value=78 Score=28.73 Aligned_cols=71 Identities=10% Similarity=0.021 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~--~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-+..+++.+++.|..+.+... +.. ..+.+.+...+++.|++..... ...+.+.+.+.||++..++.
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 22 FFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG------EHDYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS------CCHHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC------ChHHHHHhhccCCCEEEEec
Confidence 6667778888999999999998863 222 2233444556899988754322 12234566778999988765
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 96 ~ 96 (291)
T 3egc_A 96 E 96 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 59
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=42.47 E-value=28 Score=31.30 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCC
Q 013801 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (436)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI 248 (436)
+=+.|++.|+.+.|..|+....+..++++.|+..++... .+. -..+...+++.|+
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~--k~K----~~~l~~~~~~lg~ 138 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ--SDK----LVAYHELLATLQC 138 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC--SSH----HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc--CCh----HHHHHHHHHHcCc
Confidence 556788899999999999989999999999999887754 222 2345555565565
No 60
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=42.45 E-value=1e+02 Score=29.26 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEec
Q 013801 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226 (436)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ 226 (436)
..++.++-+.|++.|+++.+..|.....+..+++..|+..++.+.
T Consensus 181 ~pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~ 225 (317)
T 4eze_A 181 SPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNT 225 (317)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEC
T ss_pred CcCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEE
Confidence 346777788899999999999998889999999999999877644
No 61
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=42.29 E-value=40 Score=26.10 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEE-CChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcC
Q 013801 183 ESVSDLRKNLQARGSDLVVRV-GKPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG 247 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~-G~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~g 247 (436)
+-++++-++++..|-+|+|+. |..- ..+..-+++.|++-=+.- ...|++. .++++++++-.|
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlk-stdpeel--tqrvreflktag 103 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLK-STDPEEL--TQRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEE-CCCHHHH--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhc-cCCHHHH--HHHHHHHHHhcc
Confidence 456777888888999998875 5433 334444566676533322 2345554 678888887655
No 62
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=42.09 E-value=28 Score=31.53 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEE---CChHHHHHHHHHHhCCCEEEEeccC---CchHHHHHHHHHHHHHhcCCcEEE
Q 013801 183 ESVSDLRKNLQARGSDLVVRV---GKPETVLVELAKAIGADAVYAHREV---SHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~---G~~~~~L~~L~~~~~a~~V~~~~e~---~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
++|+-..+..+++||.-+|+- |.....+.+.+ .|++-|.+.-.+ +|+...++..+++.|++.|+++.+
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 455556667777899988876 44444444433 356666655444 355567788899999999998864
No 63
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=41.68 E-value=1.6e+02 Score=26.49 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC--hH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK--PE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~--~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|..+-+..+++.+++.|..+.+...+ .. +.+..+ ...+++.|++..... ... ..+.+.+.+.||++..++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~~~-~~~---~~~~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 22 FAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEF-VHLKVDAIFITTLDD-VYI---GSAIEEAKKAGIPVFAID 96 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHH-HHTTCSEEEEECSCT-TTT---HHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCCh-HHH---HHHHHHHHHcCCCEEEec
Confidence 66677788888999999999987643 32 333333 346899988854322 111 122345566899998876
Q ss_pred CC
Q 013801 255 GS 256 (436)
Q Consensus 255 ~~ 256 (436)
..
T Consensus 97 ~~ 98 (293)
T 3l6u_A 97 RM 98 (293)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 64
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=41.18 E-value=82 Score=28.47 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCh-H---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGKP-E---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~~-~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-+..+++.+++.|..+.+...+. . ..+.+.+...+++.|++....... ...+.+.+.||++..++.
T Consensus 27 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 27 FFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND------RIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHHCCCCEEEECC
Confidence 677778888899999999998876432 2 223444555789998875321111 233456678999988764
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 101 ~ 101 (292)
T 3k4h_A 101 P 101 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 65
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=40.94 E-value=1.1e+02 Score=27.91 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEC--------C---------------------hHHHHHHHHHHhCCCEEEEeccCCch--
Q 013801 183 ESVSDLRKNLQARGSDLVVRVG--------K---------------------PETVLVELAKAIGADAVYAHREVSHD-- 231 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G--------~---------------------~~~~L~~L~~~~~a~~V~~~~e~~p~-- 231 (436)
+.++.+++.|++.|+.+..... + ......+++++.|+..|.++..+.+.
T Consensus 51 ~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~ 130 (290)
T 3tva_A 51 EHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPESS 130 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTT
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccc
Confidence 5578999999999999987632 1 11334467788999999987543321
Q ss_pred ---H---HHHHHHHHHHHHhcCCcEE
Q 013801 232 ---E---VKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 232 ---~---~~rd~~l~~~l~~~gI~v~ 251 (436)
. .+.-+.+.+.+++.||.+-
T Consensus 131 ~~~~~~~~~~l~~l~~~a~~~Gv~l~ 156 (290)
T 3tva_A 131 SPDYSELVRVTQDLLTHAANHGQAVH 156 (290)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 1 1223444555667798774
No 66
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=40.38 E-value=44 Score=32.75 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-+..+++.+++.|..+.+...+......+.+...+++.|++... +..+.+.+.+.||++..++.
T Consensus 38 f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~~--------~~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 38 YDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFD--------DKQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEETT--------CHHHHHHHTTCCSCEEEEEE
T ss_pred hhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEecC--------ChHHHHHHhhCCCCEEEecC
Confidence 666677888888999999998876543333345555678999988421 12344567778999998764
No 67
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=39.73 E-value=32 Score=29.89 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=41.6
Q ss_pred HHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCc
Q 013801 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (436)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~ 249 (436)
+=+.|++.|+++.+..|.....+..++++.|+..++... .+.. ..+...+++.|+.
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~--~~K~----~~~~~~~~~~g~~ 109 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR--EDKL----VVLDKLLAELQLG 109 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSC--SCHH----HHHHHHHHHHTCC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCc--CChH----HHHHHHHHHcCCC
Confidence 456778899999999999989999999999999887654 1111 4555566666653
No 68
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=39.48 E-value=1e+02 Score=30.75 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHH--------hCCCEEEEeccCCchHHHHHHHHHHHHHhcCCc
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA--------IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~--------~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~ 249 (436)
-++.++.++=+.|+++|+.+.|..++..+.+...+++ .++..++.+.. |. -+.+.+.|++.|+.
T Consensus 256 ~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~K--PK----p~~l~~al~~Lgl~ 327 (387)
T 3nvb_A 256 KAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWE--NK----ADNIRTIQRTLNIG 327 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESS--CH----HHHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCC--Cc----HHHHHHHHHHhCcC
Confidence 4678899999999999999999999888888888876 46666665432 22 23566667777774
No 69
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=39.35 E-value=93 Score=28.40 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEECC-hH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 179 SFLIESVSDLRKNLQARGSDLVVRVGK-PE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 179 ~FL~esL~~L~~~L~~~Gi~L~v~~G~-~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
.|+.+-+..+++.+++.|..+++...+ .. ..+.+.+...+++.|++....... .+.+.+.+.|+++..++
T Consensus 25 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~------~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 25 PFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND------PIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC------HHHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh------HHHHHHHhCCCCEEEEC
Confidence 377788888999999999999887533 22 234445556789999885322111 23345667899998876
Q ss_pred CC
Q 013801 255 GS 256 (436)
Q Consensus 255 ~~ 256 (436)
..
T Consensus 99 ~~ 100 (295)
T 3hcw_A 99 KP 100 (295)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 70
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=38.56 E-value=57 Score=28.23 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHhC
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~ 218 (436)
.++-+.|++.|+++.+..+.....+..+++..+
T Consensus 109 ~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~g 141 (231)
T 3kzx_A 109 IELLDTLKENNITMAIVSNKNGERLRSEIHHKN 141 (231)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCC
Confidence 344444555555555555444444445555444
No 71
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=38.14 E-value=1.2e+02 Score=27.22 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEC------ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 183 ESVSDLRKNLQARGSDLVVRVG------KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G------~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
+.++.+++.|++.|+.+..... +..+...+++++.|+..|.++.. ... -+.+.+.+++.||.+-
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--~~~---~~~l~~~a~~~gv~l~ 132 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA--LSD---WDLVEKLSKQYNIKIS 132 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC--GGG---HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC--HHH---HHHHHHHHHHhCCEEE
Confidence 4578899999999999877641 23455667889999999999742 121 2467777888899874
No 72
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=37.97 E-value=1.9e+02 Score=25.89 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=46.6
Q ss_pred HHHHHhCCCeEEEEECChHHHHHHHHHHhCCCE----EEEecc---------C---CchHHHHHHHHHHHHHhcCCcEEE
Q 013801 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADA----VYAHRE---------V---SHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~----V~~~~e---------~---~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
-+.|++.|+.+.+..|.+...+..++++.+... +++... + .+-....-+.+.+.+++.++.+..
T Consensus 31 l~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGai~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (279)
T 3mpo_A 31 VQAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAITFNGSVAQTISGKVLTNHSLTYEDYIDLEAWARKVRAHFQI 110 (279)
T ss_dssp HHHHHHTTCEEEEECSSCHHHHHHHHHHTTCCSSSCEEEEGGGTEEEETTSCEEEECCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCCEEEEcCcEEEECCCCCEEEecCCCHHHHHHHHHHHHHcCCeEEE
Confidence 345677899999999999888889998877541 222110 0 011122345666788888999887
Q ss_pred eeCCeeee
Q 013801 253 FWGSTLYH 260 (436)
Q Consensus 253 ~~~~~Lv~ 260 (436)
+.+..++.
T Consensus 111 ~~~~~~~~ 118 (279)
T 3mpo_A 111 ETPDYIYT 118 (279)
T ss_dssp ECSSCEEE
T ss_pred EECCEEEE
Confidence 76665543
No 73
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=37.69 E-value=2.4e+02 Score=25.67 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q 013801 124 RASIVWFRNDLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDL 199 (436)
Q Consensus 124 ~~~LvWfRrDLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L 199 (436)
+..|+-. |.--....+|.+|+. .+.++..+++.++.. .. +.|+++.+.++..|+++
T Consensus 8 ~~ILv~~--D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~-----------~~-------~~l~~~~~~~~~~~~~~ 67 (290)
T 3mt0_A 8 RSILVVI--EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD-----------HS-------AALNDLAQELREEGYSV 67 (290)
T ss_dssp CEEEEEC--CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC-----------CH-------HHHHHHHHHHHHTTCCE
T ss_pred ceEEEEe--CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH-----------HH-------HHHHHHHHHHhhCCCeE
Confidence 3344443 666677788887763 467888899987511 11 23456666777788877
Q ss_pred EEE---ECChHHHHHHHHHHhCCCEEEEeccCCch--HHHHHHHHHHHHHhcCCcEEEee
Q 013801 200 VVR---VGKPETVLVELAKAIGADAVYAHREVSHD--EVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 200 ~v~---~G~~~~~L~~L~~~~~a~~V~~~~e~~p~--~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
.+. .|++.+.|.+.+++.+++-|++-..-... ..-......+.+...++++..+.
T Consensus 68 ~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~ 127 (290)
T 3mt0_A 68 STNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTK 127 (290)
T ss_dssp EEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEec
Confidence 553 37899999999999999999987643211 11112233445566788887765
No 74
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=37.67 E-value=2.3e+02 Score=26.30 Aligned_cols=72 Identities=13% Similarity=0.209 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC--hHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK--PET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~--~~~--~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|+.+-+..+++.+++.|..+.+...+ ... .+.+.+...+++.|++...... +..+.+.+++.||++..++.
T Consensus 77 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 77 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-----VDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-----HHHHHHHHHHCSSCEEEESS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-----hHHHHHHHHcCCCCEEEEcC
Confidence 66777888889999999999887632 222 1234444568999988543221 13355566778999987764
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 152 ~ 152 (338)
T 3dbi_A 152 R 152 (338)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=37.12 E-value=2e+02 Score=26.96 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~--~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|+.+-+..+++.+++.|..+.+... +.. ..+.+.+...+++.|++....... ...+.+.+.|+++..+++
T Consensus 84 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~------~~~~~l~~~~iPvV~i~~ 157 (355)
T 3e3m_A 84 HFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE------QTIRLLQRASIPIVEIWE 157 (355)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH------HHHHHHHHCCSCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH------HHHHHHHhCCCCEEEECC
Confidence 6667788889999999999988763 222 122333445689998875432211 233456678999998754
No 76
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=36.99 E-value=60 Score=26.90 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEec
Q 013801 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226 (436)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ 226 (436)
-+.|++.|+.+.+..|.....+..++++.|+..++...
T Consensus 40 l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~ 77 (164)
T 3e8m_A 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGV 77 (164)
T ss_dssp HHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSC
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeeccc
Confidence 45677889999999999888899999999999877654
No 77
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=36.20 E-value=1.5e+02 Score=27.90 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEe
Q 013801 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~ 225 (436)
.++.++-+.|++.|+++.+..|.....+..++++.|+..++.+
T Consensus 181 pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~ 223 (335)
T 3n28_A 181 PELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSN 223 (335)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEee
Confidence 3556677888999999999988888888889999999877664
No 78
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=35.91 E-value=1.1e+02 Score=26.00 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEE
Q 013801 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~ 224 (436)
++.++-+.|++.|+++.+..+.....+..+++..|+..++.
T Consensus 79 ~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~ 119 (217)
T 3m1y_A 79 GALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFS 119 (217)
T ss_dssp THHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcchhcc
Confidence 45666678889999999998888888888888888876554
No 79
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=35.50 E-value=1.6e+02 Score=27.13 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|+.+-+..+++.+++.|..+.+... +.. +.+..++. .+++.|++... .... .+. ..+.+.+.||++..++
T Consensus 17 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~-~~~~--~~~-~~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 17 RWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT-KGVKVLVIASI-DGTT--LSD-VLKQAGEQGIKVIAYD 91 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCS-SGGG--GHH-HHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH-cCCCEEEEEcC-Cchh--HHH-HHHHHHHCCCCEEEEC
Confidence 6677778888999999999988763 332 33444444 58999988542 1111 122 2345567899998876
Q ss_pred CC
Q 013801 255 GS 256 (436)
Q Consensus 255 ~~ 256 (436)
..
T Consensus 92 ~~ 93 (330)
T 3uug_A 92 RL 93 (330)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 80
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=35.25 E-value=1.1e+02 Score=27.41 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEEC---C---hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 183 ESVSDLRKNLQARGSDLVVRVG---K---PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G---~---~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
+.++.+++.|++.|+.+..... . ..+...+++++.|+..|.++.. . ..-+.+.+.+++.||.+.
T Consensus 61 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~--~---~~l~~l~~~a~~~gv~l~ 130 (257)
T 3lmz_A 61 EQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPN--Y---ELLPYVDKKVKEYDFHYA 130 (257)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEEC--G---GGHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCC--H---HHHHHHHHHHHHcCCEEE
Confidence 4568899999999999876542 2 2344456788999999998643 1 223456777788899875
No 81
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=35.17 E-value=1.2e+02 Score=27.68 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEECC-hH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 179 SFLIESVSDLRKNLQARGSDLVVRVGK-PE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 179 ~FL~esL~~L~~~L~~~Gi~L~v~~G~-~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
.|+.+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|++....... ...+.+.+.||++..++
T Consensus 40 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~ 113 (305)
T 3huu_A 40 PFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD------PIEHLLNEFKVPYLIVG 113 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC------HHHHHHHHTTCCEEEES
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc------HHHHHHHHcCCCEEEEC
Confidence 477777888899999999999887643 22 234445556789998875321111 23345667899999887
Q ss_pred CCe
Q 013801 255 GST 257 (436)
Q Consensus 255 ~~~ 257 (436)
...
T Consensus 114 ~~~ 116 (305)
T 3huu_A 114 KSL 116 (305)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 82
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=34.55 E-value=2.4e+02 Score=25.46 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~~--~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-+..+++.+++.|..+.+... +... .+.+.+...+++.|++...... +..+ +.+.+.||++..++.
T Consensus 30 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~-~~l~~~~iPvV~~~~ 103 (289)
T 2fep_A 30 FYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-----DEHV-AEFKRSPVPIVLAAS 103 (289)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-----HHHH-HHHHHSSSCEEEESC
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-----HHHH-HHHHhcCCCEEEEcc
Confidence 6667778888899999999988753 3221 2223334568999887542111 1223 344568999988764
No 83
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=34.23 E-value=1e+02 Score=27.79 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=63.6
Q ss_pred cCcHHHHHHh----hcCCceeeEEEeCCCCcCCC-CCCCCCC--C---------HHHHHHHHHHHHHHHHHHHhCCCeE-
Q 013801 137 HDNESLNTAN----NESVSVLPVYCFDPRDYGKS-SSGFDKT--G---------PYRASFLIESVSDLRKNLQARGSDL- 199 (436)
Q Consensus 137 ~DN~AL~~A~----~~~~~vl~vyi~dp~~~~~~-~~~~~~~--~---------~~r~~FL~esL~~L~~~L~~~Gi~L- 199 (436)
....+|.+|. ..+.++..+++.++...... ..++... . .....-..+.|..+.+.+++.|++.
T Consensus 12 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~ 91 (268)
T 3ab8_A 12 QARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQSALAAGVAVE 91 (268)
T ss_dssp GGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 3445666654 34678999999874321000 0000000 0 0111223456677777788888765
Q ss_pred -EEEECChHHHHHHHHHHhCCCEEEEeccCCc--hHH-HHHHHHHHHHHhcCCcEEEee
Q 013801 200 -VVRVGKPETVLVELAKAIGADAVYAHREVSH--DEV-KSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 200 -~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p--~~~-~rd~~l~~~l~~~gI~v~~~~ 254 (436)
.+..|++.+.|.+. +.+++-|++-..-.. ... -.-....+.+...++++..+.
T Consensus 92 ~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~ 148 (268)
T 3ab8_A 92 AVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAP 148 (268)
T ss_dssp EEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEEC
T ss_pred EEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEEC
Confidence 45679999999988 789999998764321 110 011223334455678877554
No 84
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=34.21 E-value=85 Score=33.98 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=42.1
Q ss_pred HHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
+.|++.|+.+.+..|+.......++++.|++.|++. ..|..+. .+.+.+++.|-.+-.
T Consensus 564 ~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~--~~P~~K~---~~v~~l~~~g~~V~~ 621 (736)
T 3rfu_A 564 LELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAE--IMPEDKS---RIVSELKDKGLIVAM 621 (736)
T ss_dssp HHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEECS--CCHHHHH---HHHHHHHHHSCCEEE
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEe--cCHHHHH---HHHHHHHhcCCEEEE
Confidence 456678999999999999999999999999988774 5666542 233445555544443
No 85
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=34.13 E-value=1.8e+02 Score=25.66 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC--hH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK--PE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~--~~--~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|++....... + ...+.+.+.|+++..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~----~-~~~~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 16 SYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE----D-DSYRELQDKGLPVIAIDR 90 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS----C-CHHHHHHHTTCCEEEESS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc----H-HHHHHHHHcCCCEEEEcc
Confidence 66677788888999999999988643 22 122334445689998885432111 1 122455668999987764
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 91 ~ 91 (272)
T 3o74_A 91 R 91 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 86
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=33.56 E-value=1.4e+02 Score=28.51 Aligned_cols=68 Identities=9% Similarity=0.123 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhC-------CCeEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHHHhcCCcE
Q 013801 181 LIESVSDLRKNLQAR-------GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEV 250 (436)
Q Consensus 181 L~esL~~L~~~L~~~-------Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---e~~p~~~~rd~~l~~~l~~~gI~v 250 (436)
+.+-|..|.+++++. +-.+++.+ +.+.-|++.+|.+.+.... +-+|...+ -.++.+.+++.+|++
T Consensus 175 ~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~ 249 (313)
T 1toa_A 175 YQQQLDKLDAYVRRKAQSLPAERRVLVTAH----DAFGYFSRAYGFEVKGLQGVSTASEASAHD-MQELAAFIAQRKLPA 249 (313)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGCEEEEEE----SCCHHHHHHHTCEEEEEECSSCSSCCCHHH-HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHhhCCccCCEEEEEC----CcHHHHHHHCCCeEEEeeccCCCCCCCHHH-HHHHHHHHHHcCCCE
Confidence 344555655554432 55677665 3577889999988765532 23344333 356677888889988
Q ss_pred EEe
Q 013801 251 KYF 253 (436)
Q Consensus 251 ~~~ 253 (436)
..+
T Consensus 250 If~ 252 (313)
T 1toa_A 250 IFI 252 (313)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 87
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=33.46 E-value=75 Score=25.78 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEE
Q 013801 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVY 223 (436)
Q Consensus 177 r~~FL~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~ 223 (436)
+... ...|.++.+.+++.|+.++.+.-+..+.+.++++++++.--+
T Consensus 39 C~~~-~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~ 84 (151)
T 3raz_A 39 CRKE-MPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPI 84 (151)
T ss_dssp HHHH-HHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCE
T ss_pred HHHH-HHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCce
Confidence 4433 355788888887788888888777778899999998876433
No 88
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=33.34 E-value=1.5e+02 Score=26.60 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~~--~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|+.+-+..+++.+++.|..+.+... +... .+.+.+...+++.|++...-...... ...+.+.+.+.||++..++.
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~-~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 29 IFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTP-NIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCT-THHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCC-cHHHHHHHHhcCCCEEEEec
Confidence 5566678888899999999998863 2222 22233345789999885421110000 11233456678999998764
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 108 ~ 108 (298)
T 3tb6_A 108 S 108 (298)
T ss_dssp C
T ss_pred C
Confidence 3
No 89
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=33.34 E-value=56 Score=30.42 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=51.4
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHh--CCC--eEEEEE
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTG-PYRASFLIESVSDLRKNLQA--RGS--DLVVRV 203 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~-~~r~~FL~esL~~L~~~L~~--~Gi--~L~v~~ 203 (436)
|..-....+|..|.. .+.+|..|+|+++...... .... .....-..+.|.++.+.|++ .|+ ...+..
T Consensus 179 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (309)
T 3cis_A 179 DGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEW----PGIDWPATQSMAEQVLAERLAGWQERYPNVAITRVVVR 254 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTC----SSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEES
T ss_pred CCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCC----CcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence 665566667777653 3568899999876432100 0011 11111222333444344433 354 455677
Q ss_pred CChHHHHHHHHHHhCCCEEEEecc
Q 013801 204 GKPETVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~e 227 (436)
|++.+.|.+.++ +++-|++-..
T Consensus 255 g~~~~~I~~~a~--~adliV~G~~ 276 (309)
T 3cis_A 255 DQPARQLVQRSE--EAQLVVVGSR 276 (309)
T ss_dssp SCHHHHHHHHHT--TCSEEEEESS
T ss_pred CCHHHHHHHhhC--CCCEEEECCC
Confidence 999999999997 8998888653
No 90
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=33.28 E-value=1.5e+02 Score=28.92 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEec--------------cCCchHHHHHHHHHHHHHhcCC
Q 013801 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR--------------EVSHDEVKSEEKIEAAMKDEGI 248 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~--------------e~~p~~~~rd~~l~~~l~~~gI 248 (436)
.++.++-+.|++.|+.+.+..|.....+..+++..|+..++.+. ++. .....-+.+...+++.|+
T Consensus 259 pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~l~~~dg~~tg~~~~~v~-~~kpk~~~~~~~~~~~gi 337 (415)
T 3p96_A 259 PGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPII-DRAGKATALREFAQRAGV 337 (415)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEECEEEETTEEEEEECSSCC-CHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeeeeEEEeCCEEEeeEccCCC-CCcchHHHHHHHHHHcCc
Confidence 35667778889999999999888888888999999998887653 111 122333456666777776
Q ss_pred c
Q 013801 249 E 249 (436)
Q Consensus 249 ~ 249 (436)
.
T Consensus 338 ~ 338 (415)
T 3p96_A 338 P 338 (415)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=33.22 E-value=36 Score=28.66 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEECCh
Q 013801 182 IESVSDLRKNLQARGSDLVVRVGKP 206 (436)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~G~~ 206 (436)
+.++.++=+.|++.|+.+.+..+..
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~ 53 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQS 53 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCC
Confidence 4566667777888999999887665
No 92
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=32.69 E-value=21 Score=35.48 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCC------CEEEEe
Q 013801 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA------DAVYAH 225 (436)
Q Consensus 181 L~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a------~~V~~~ 225 (436)
++..+++|=+.|++.|++++|+-|...+.+..++++.|+ ++|+.+
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~ 272 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGL 272 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEE
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEe
Confidence 568889999999999999999999999999999998654 356665
No 93
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=32.65 E-value=1.7e+02 Score=27.82 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhC-------CCeEEEEECChHHHHHHHHHHhCCCEEEEe---ccCCchHHHHHHHHHHHHHhc
Q 013801 177 RASFLIESVSDLRKNLQAR-------GSDLVVRVGKPETVLVELAKAIGADAVYAH---REVSHDEVKSEEKIEAAMKDE 246 (436)
Q Consensus 177 r~~FL~esL~~L~~~L~~~-------Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~---~e~~p~~~~rd~~l~~~l~~~ 246 (436)
+..=+.+-|..|.+++++. +-.+++.+ +.+.-|++.+|.+.++.. .+-+|... .-+++.+.+++.
T Consensus 164 Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~i~~~~ePs~~-~l~~l~~~ik~~ 238 (307)
T 3ujp_A 164 NAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTPK-QVQTVIEEVKTN 238 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSCCSSCCCHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCEEEEEC----chHHHHHHHCCCcEEEeeccCCCCCCCHH-HHHHHHHHHHhc
Confidence 3344556677777776642 34455555 358899999999977543 23344433 345677888999
Q ss_pred CCcEEEe
Q 013801 247 GIEVKYF 253 (436)
Q Consensus 247 gI~v~~~ 253 (436)
+|++..+
T Consensus 239 ~v~~If~ 245 (307)
T 3ujp_A 239 NVPTIFC 245 (307)
T ss_dssp TCSEEEE
T ss_pred CCcEEEE
Confidence 9998754
No 94
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=32.56 E-value=1.1e+02 Score=27.16 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEE----CChH---HHHHHHHHHhC-CCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRV----GKPE---TVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~----G~~~---~~L~~L~~~~~-a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
|..+-+..+++.+++.|..+.+.. ++.. +.+..++.. + ++.|++...-... .....+.+.+.||++.
T Consensus 14 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~vdgii~~~~~~~~----~~~~~~~~~~~~ipvV 88 (276)
T 3ksm_A 14 YWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQ-APPDALILAPNSAED----LTPSVAQYRARNIPVL 88 (276)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHH-SCCSEEEECCSSTTT----THHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCHHH----HHHHHHHHHHCCCcEE
Confidence 666777888889999999998875 2332 344455554 6 9999886421111 1123345667899999
Q ss_pred EeeCC
Q 013801 252 YFWGS 256 (436)
Q Consensus 252 ~~~~~ 256 (436)
.++..
T Consensus 89 ~~~~~ 93 (276)
T 3ksm_A 89 VVDSD 93 (276)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 87643
No 95
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=32.55 E-value=2.6e+02 Score=25.16 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--Ch--H-H---HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KP--E-T---VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~--~-~---~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
|..+-+..+++.+++.|..+.+... +. . + .+.. +...+++.|++..... . +..+ +.+.+.||++.
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~vdgiIi~~~~~-~----~~~~-~~l~~~~iPvV 94 (290)
T 2rgy_A 22 YYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRF-LIGRDCDGVVVISHDL-H----DEDL-DELHRMHPKMV 94 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHH-HHHTTCSEEEECCSSS-C----HHHH-HHHHHHCSSEE
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHH-HHhcCccEEEEecCCC-C----HHHH-HHHhhcCCCEE
Confidence 6677778888899999999988653 22 1 2 3333 3456899988754221 1 1222 34455799998
Q ss_pred EeeC
Q 013801 252 YFWG 255 (436)
Q Consensus 252 ~~~~ 255 (436)
.++.
T Consensus 95 ~~~~ 98 (290)
T 2rgy_A 95 FLNR 98 (290)
T ss_dssp EESS
T ss_pred EEcc
Confidence 8764
No 96
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=32.32 E-value=1.7e+02 Score=27.24 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHh-----CCCeEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 180 FLIESVSDLRKNLQA-----RGSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 180 FL~esL~~L~~~L~~-----~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
=+.+-|..|.+++++ .|-.+++.+ +.+.-|++.+|.+.+.... +-+|...+ -.++.+.+++.+|.+.
T Consensus 156 ~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~i 230 (284)
T 3cx3_A 156 AFIKKAQELTKKFQPKFEKATQKTFVTQH----TAFSYLAKRFGLNQLGIAGISPEQEPSPRQ-LTEIQEFVKTYKVKTI 230 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCEEEEE----SCCHHHHHHTTCCEEEEECSSTTCCCCSHH-HHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEEC----CchHHHHHHcCCEEeeccCCCCCCCCCHHH-HHHHHHHHHHcCCCEE
Confidence 345566666665554 356677666 3577899999999876542 23333333 3566778888999887
Q ss_pred Ee
Q 013801 252 YF 253 (436)
Q Consensus 252 ~~ 253 (436)
.+
T Consensus 231 f~ 232 (284)
T 3cx3_A 231 FT 232 (284)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 97
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=31.59 E-value=2.2e+02 Score=25.61 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEECC--------------hHHHHHHHHHHhCCCEEEEeccCCch----H------HHHHH
Q 013801 182 IESVSDLRKNLQARGSDLVVRVGK--------------PETVLVELAKAIGADAVYAHREVSHD----E------VKSEE 237 (436)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~G~--------------~~~~L~~L~~~~~a~~V~~~~e~~p~----~------~~rd~ 237 (436)
-+.+..+++.|++.|+.+...... ......+++++.|+..|.++....+. + .+.-+
T Consensus 47 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~ 126 (286)
T 3dx5_A 47 YETTERELNCLKDKTLEITMISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIR 126 (286)
T ss_dssp HHHHHHHHHHTGGGTCCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHH
Confidence 367899999999999999876321 11234467788999999886543221 1 12233
Q ss_pred HHHHHHHhcCCcEE
Q 013801 238 KIEAAMKDEGIEVK 251 (436)
Q Consensus 238 ~l~~~l~~~gI~v~ 251 (436)
.+.+.+++.||.+-
T Consensus 127 ~l~~~a~~~Gv~l~ 140 (286)
T 3dx5_A 127 MICELFAQHNMYVL 140 (286)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCCEEE
Confidence 44555667899775
No 98
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=31.53 E-value=60 Score=24.66 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
....+.++.-.+.-|+...+.++ .....+...|++.||++..+.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~---~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP---ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH---HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEC
Confidence 33445555556777888888776 234567778888888887654
No 99
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=31.22 E-value=1.1e+02 Score=26.43 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=32.5
Q ss_pred HHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEec
Q 013801 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226 (436)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ 226 (436)
-+.|++.|+++.+..|.....+..+++..|+..++...
T Consensus 55 l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~ 92 (191)
T 3n1u_A 55 LKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQ 92 (191)
T ss_dssp HHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeCC
Confidence 35678899999999999989999999999999877654
No 100
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=31.10 E-value=2.7e+02 Score=25.01 Aligned_cols=72 Identities=15% Similarity=0.048 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC-hH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK-PE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~-~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|+.+-++.+++.++++|..+++.... .. +.+..+. ..+++.|+.... .... ...+.+.+.+.||++..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~-~~~~---~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 16 WFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLA-ASGAKGFVICTP-DPKL---GSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHH-HTTCCEEEEECS-CGGG---HHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-Cchh---hHHHHHHHHHCCCcEEEeCC
Confidence 67777788888999999999887643 22 2333433 358999887642 1121 12223456678999998874
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 91 ~ 91 (306)
T 8abp_A 91 Q 91 (306)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=30.49 E-value=59 Score=25.96 Aligned_cols=92 Identities=10% Similarity=0.043 Sum_probs=53.8
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEe-CC--CC--cCCCCCCCCCCCHHHH---HHHHHHHHHHHHH--HHhCC-C
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCF-DP--RD--YGKSSSGFDKTGPYRA---SFLIESVSDLRKN--LQARG-S 197 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~-dp--~~--~~~~~~~~~~~~~~r~---~FL~esL~~L~~~--L~~~G-i 197 (436)
|.--....+|.+|.. .+..+..++++ +. .. +.. .++........ .-..+.|..+ +. +...| +
T Consensus 12 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 88 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVT--FGLPFPPEIKEESKKRIERRLREV-WEKLTGSTEIP 88 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHH--HCCCCCTHHHHHHHHHHHHHHHHH-HHHHHSCCCCC
T ss_pred cCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccc--cCCCCChHHHHHHHHHHHHHHHHH-HHHhhccCCcc
Confidence 444455667777653 35678899998 62 11 000 00000011111 1223344555 44 23444 5
Q ss_pred eEEEEECChHHHHHHHHHHhCCCEEEEecc
Q 013801 198 DLVVRVGKPETVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 198 ~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e 227 (436)
...+..|++.+.|.+.+++.+++-|++-..
T Consensus 89 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 118 (138)
T 1q77_A 89 GVEYRIGPLSEEVKKFVEGKGYELVVWACY 118 (138)
T ss_dssp CEEEECSCHHHHHHHHHTTSCCSEEEECSC
T ss_pred eEEEEcCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 667788999999999999999999998754
No 102
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=29.94 E-value=72 Score=29.05 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHH---HHHHHHHHHhcCCcEEEee
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS---EEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~r---d~~l~~~l~~~gI~v~~~~ 254 (436)
.++.+.|++.+.+|+|..|-..-.=.++++.+.-..|..|-...|..+-. ...+.+-.+..|+.++.++
T Consensus 72 ~~~~~~L~~~~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~ 143 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVY 143 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCceEeCHHHHhhccCCeEEECcccccCCCCccHHHHHHHcCCCeEEEEEEEEc
Confidence 45556666777777777654221112445555556677776665544311 2233333333455555443
No 103
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=29.55 E-value=1.3e+02 Score=25.37 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=47.7
Q ss_pred CCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEE-----ECChHHHHHHHHHHhCCCEEE
Q 013801 149 SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVY 223 (436)
Q Consensus 149 ~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~-----~G~~~~~L~~L~~~~~a~~V~ 223 (436)
+.-++|-||++.=+.-.. .....+..=-..+|+.| +.|++.+- +.+. .++.-+.|.++|++.++ .|+
T Consensus 31 g~liIP~~Vl~ELq~lA~-----s~d~~~r~rGr~gL~iL-~~L~~~~~-vei~~~~~~~~~vD~~ll~lA~~~~~-~lv 102 (134)
T 3ix7_A 31 GPLWVPHFVLKELQHFAD-----SQDPLRRAKGRRGLETL-ERLREAAP-LEVLETTPKGESVDEKLLFLARDLEA-ALV 102 (134)
T ss_dssp SCEEEEHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHH-HHHHHHSC-EEEECCCCSCSSHHHHHHHHHHHTTC-EEE
T ss_pred CceecHHHHHHHHHHHHh-----ccchhhHHHHHHHHHHH-HHHHhcCC-EEEeCCCCCcccHHHHHHHHHHHhCC-EEE
Confidence 445678888764221110 01122222233455444 33443332 4444 14567889999999986 455
Q ss_pred EeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 224 AHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 224 ~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
++ |..+++.++..||++...
T Consensus 103 Tn----------D~~L~kvA~~~GI~Vl~l 122 (134)
T 3ix7_A 103 TN----------DHALLQMARIYGVKALSI 122 (134)
T ss_dssp ES----------CHHHHHHHHHTTCCEEEH
T ss_pred eC----------CHHHHHHHHHCCCeEEeh
Confidence 54 345677777789998753
No 104
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=29.29 E-value=2e+02 Score=26.88 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhC-----CCeEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHHHhcCCcE
Q 013801 179 SFLIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEV 250 (436)
Q Consensus 179 ~FL~esL~~L~~~L~~~-----Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---e~~p~~~~rd~~l~~~l~~~gI~v 250 (436)
.=+.+-|..|.+++++. |-.+++.+ +.+.-|++.+|.+.+.... +-+|... .-.++.+.+++.+|++
T Consensus 157 ~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~~-~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 157 KAFKKEAEQLTEEYTQKFKKVRSKTFVTQH----TAFSYLAKRFGLKQLGISGISPEQEPSPR-QLKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCEEEEEE----SCCHHHHHHTTCEEEEEECSCC---CCHH-HHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEC----CchHHHHHHCCCeEeeccccCCCCCCCHH-HHHHHHHHHHHcCCCE
Confidence 34455667776666642 56666665 3577888888888765432 1233333 3356677788888888
Q ss_pred EEe
Q 013801 251 KYF 253 (436)
Q Consensus 251 ~~~ 253 (436)
..+
T Consensus 232 if~ 234 (286)
T 3gi1_A 232 IFA 234 (286)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 105
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=29.20 E-value=3.1e+02 Score=24.49 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|..+-+..+++.+++.|..+++... +.. +.+..+. ..+++.|++... ..... ...+ +.+.+.||++..++
T Consensus 15 f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~-~~~~~--~~~~-~~~~~~~iPvV~~~ 89 (283)
T 2ioy_A 15 FFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLI-QQKVDVLLINPV-DSDAV--VTAI-KEANSKNIPVITID 89 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS-STTTT--HHHH-HHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-chhhh--HHHH-HHHHHCCCeEEEec
Confidence 6667778888899999999988753 332 3344444 568999887532 21211 1123 34566799998876
Q ss_pred C
Q 013801 255 G 255 (436)
Q Consensus 255 ~ 255 (436)
.
T Consensus 90 ~ 90 (283)
T 2ioy_A 90 R 90 (283)
T ss_dssp S
T ss_pred C
Confidence 4
No 106
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=29.04 E-value=75 Score=30.91 Aligned_cols=42 Identities=24% Similarity=0.068 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEE
Q 013801 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~ 224 (436)
+-+..+++-|+..|++.++..|+..+.+..|+++-.+..|++
T Consensus 127 ~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~S 168 (346)
T 2izo_A 127 IMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAAS 168 (346)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEEEC
Confidence 456677788888899999888888888888887522344433
No 107
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=28.96 E-value=1.7e+02 Score=27.06 Aligned_cols=127 Identities=12% Similarity=-0.034 Sum_probs=69.1
Q ss_pred CCCeEEEEEeCCCCccCcHHHHHHh----hcCCceeeEEEeCCCCcCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHH
Q 013801 122 IRRASIVWFRNDLRVHDNESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTGPY----RASFLIESVSDLRKNLQ 193 (436)
Q Consensus 122 ~~~~~LvWfRrDLRl~DN~AL~~A~----~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~----r~~FL~esL~~L~~~L~ 193 (436)
..+..||=. |.--....+|.+|. ..+..|..++++++...... .+ ..... ...-..+.|.++.+.++
T Consensus 18 ~~~~ILv~~--D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (309)
T 3cis_A 18 SSLGIIVGI--DDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWL-EV--PLPPGVLRWQQDHGRHLIDDALKVVE 92 (309)
T ss_dssp CTTEEEEEC--CSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTT-CC--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEE--CCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccc-cC--CCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 344444443 44334456676664 34678999999885432100 00 11111 11223345666677777
Q ss_pred hC-----CCeE--EEEECChHHHHHHHHHHhCCCEEEEeccCC-chHH-HHHHHHHHHHHhcCCcEEEeeC
Q 013801 194 AR-----GSDL--VVRVGKPETVLVELAKAIGADAVYAHREVS-HDEV-KSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 194 ~~-----Gi~L--~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~-p~~~-~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
+. |+++ .+..|++.+.|.+.++ +++-|++-..-. .... -.-....+.+...++++..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 161 (309)
T 3cis_A 93 QASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHD 161 (309)
T ss_dssp HHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECT
T ss_pred HhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcC
Confidence 65 7665 4457999999999886 788888875421 1111 0112233344556788876543
No 108
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=28.88 E-value=1.1e+02 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCeEEEEECChHHHHHHHHHHhC
Q 013801 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218 (436)
Q Consensus 187 ~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~ 218 (436)
++-+.|++.|+.+.+..+.....+..+++..|
T Consensus 90 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~g 121 (222)
T 2nyv_A 90 YTLEALKSKGFKLAVVSNKLEELSKKILDILN 121 (222)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 33344455555555555544444445555444
No 109
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.85 E-value=2.4e+02 Score=25.61 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~~--~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|+.+-+..+++.+++.|..+.+... +... ...+.+...+++.|++...-. .. .. .+.+.+.+.||++..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~~--~~-~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 16 RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG-QV--LS-NVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp TTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSST-TS--CH-HHHHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-hh--hH-HHHHHHHHCCCeEEEECC
Confidence 4455667778889999999988763 3322 222333446899988764321 11 11 223455678999988764
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 92 ~ 92 (313)
T 3m9w_A 92 M 92 (313)
T ss_dssp C
T ss_pred c
Confidence 3
No 110
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=28.28 E-value=94 Score=27.02 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCC----CEEEEeccC
Q 013801 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~e~ 228 (436)
++.++-+.|++.|+++.+..+.....+..+++..++ +.|++..+.
T Consensus 114 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 162 (240)
T 3sd7_A 114 NMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLD 162 (240)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTT
T ss_pred cHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHhhEEEEEecccc
Confidence 344555667777888877776666666777776653 456655544
No 111
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=28.13 E-value=3e+02 Score=26.35 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEE--CChHHHHHHHHHHh------CCCEEEEeccCCchHHHHHHHHHHHHHhcCCcE
Q 013801 179 SFLIESVSDLRKNLQARGSDLVVRV--GKPETVLVELAKAI------GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEV 250 (436)
Q Consensus 179 ~FL~esL~~L~~~L~~~Gi~L~v~~--G~~~~~L~~L~~~~------~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v 250 (436)
.+..+++.-|++.+++.+ .++|.. |....++..++.+. .+..|+++..+.+.+ ..+-+.+.|++.||++
T Consensus 30 ~le~~a~~ilr~~~~~~~-~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~e--t~~~v~~~~~~~gi~l 106 (325)
T 1zun_A 30 QLEAESIHIIREVAAEFD-NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQE--MYRFRDQMVEEMGLDL 106 (325)
T ss_dssp HHHHHHHHHHHHHHHHCS-SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHH--HHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHHHHHHhCC-CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHH--HHHHHHHHHHHcCCCE
Confidence 345568888888888765 444443 44556677777765 578889988777543 3456777788889999
Q ss_pred EEee
Q 013801 251 KYFW 254 (436)
Q Consensus 251 ~~~~ 254 (436)
..+.
T Consensus 107 ~v~~ 110 (325)
T 1zun_A 107 ITHI 110 (325)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8765
No 112
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=28.13 E-value=1.7e+02 Score=26.51 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC----hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~----~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|+.+-+..+++.+++.|..+.+...+ ..+.+..+ ...+++.|++....... ..+ +.+.+ |+++..++.
T Consensus 25 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~-----~~~-~~~~~-~iPvV~i~~ 96 (289)
T 3k9c_A 25 FHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQAL-MRERCEAAILLGTRFDT-----DEL-GALAD-RVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHH-TTTTEEEEEEETCCCCH-----HHH-HHHHT-TSCEEEESS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH-HhCCCCEEEEECCCCCH-----HHH-HHHHc-CCCEEEEcC
Confidence 66777888899999999999887522 23334444 34578888776432211 223 34455 999988765
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 97 ~ 97 (289)
T 3k9c_A 97 A 97 (289)
T ss_dssp C
T ss_pred C
Confidence 3
No 113
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=27.81 E-value=1.6e+02 Score=26.84 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEC---------Ch---------HHHHHHHHHHhCCCEEEEeccCC-------chH------
Q 013801 184 SVSDLRKNLQARGSDLVVRVG---------KP---------ETVLVELAKAIGADAVYAHREVS-------HDE------ 232 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G---------~~---------~~~L~~L~~~~~a~~V~~~~e~~-------p~~------ 232 (436)
.+..+++.|++.|+.+..+.. ++ .....+++++.|+..|+++..+. ..+
T Consensus 65 ~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~ 144 (287)
T 3kws_A 65 RVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFL 144 (287)
T ss_dssp GHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHH
Confidence 468899999999999865431 11 12234677889999998864321 111
Q ss_pred HHHHHHHHHHHHhcCCcEE
Q 013801 233 VKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 233 ~~rd~~l~~~l~~~gI~v~ 251 (436)
...-+.+.+.+++.||.+-
T Consensus 145 ~~~l~~l~~~a~~~Gv~l~ 163 (287)
T 3kws_A 145 CEQFNEMGTFAAQHGTSVI 163 (287)
T ss_dssp HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHcCCEEE
Confidence 1223445556667899875
No 114
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.76 E-value=2.4e+02 Score=25.45 Aligned_cols=72 Identities=8% Similarity=-0.017 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC----ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG----KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G----~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
|..+-+..+++.+++.|..+.+... +.. +.+..++ ..+++.|++...- .... +.. .+.+.+.||++..
T Consensus 17 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~-~~~~--~~~-~~~~~~~giPvV~ 91 (297)
T 3rot_A 17 YWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESAL-ATYPSGIATTIPS-DTAF--SKS-LQRANKLNIPVIA 91 (297)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHH-HTCCSEEEECCCC-SSTT--HHH-HHHHHHHTCCEEE
T ss_pred hHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHH-HcCCCEEEEeCCC-HHHH--HHH-HHHHHHCCCCEEE
Confidence 6667778888889999999998763 333 2333333 4589998875321 1111 222 3345667999988
Q ss_pred eeCC
Q 013801 253 FWGS 256 (436)
Q Consensus 253 ~~~~ 256 (436)
++..
T Consensus 92 ~~~~ 95 (297)
T 3rot_A 92 VDTR 95 (297)
T ss_dssp ESCC
T ss_pred EcCC
Confidence 7643
No 115
>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted, oxazoline, NAG-thiazoline, substrate-participation; 1.40A {Streptococcus pneumoniae} PDB: 2w92_A*
Probab=27.74 E-value=1.5e+02 Score=31.55 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=63.5
Q ss_pred CeEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Q 013801 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (436)
Q Consensus 124 ~~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~ 203 (436)
+.=++| +-+ +..=..+..|.++|.+|+..++|++... .....++.+-|+ +.....
T Consensus 92 D~fvyf--h~l-~P~~~widaAHrnGV~VlGT~~fe~~~~-----------~~~~~~~~~lL~------~~~~~~----- 146 (653)
T 2w91_A 92 DSMVFW--EGL-VPTPDVIDAGHRNGVPVYGTLFFNWSNS-----------IADQERFAEALK------QDADGS----- 146 (653)
T ss_dssp SEEEET--TCS-SCCHHHHHHHHHTTCCEEEEEEEEEECC-----------HHHHHHHHHHTC------CCTTSC-----
T ss_pred ceeecc--ccc-CCCcHHHHHHHHCCCEEEEEEecCcccC-----------CcHHHHHHHHhc------cCccch-----
Confidence 344666 566 5544456677789999999999987432 222233333221 111111
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCc----h----HHHHHHHHHHHHHhcCCcEEE
Q 013801 204 GKPETVLVELAKAIGADAVYAHREVSH----D----EVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~e~~p----~----~~~rd~~l~~~l~~~gI~v~~ 252 (436)
-..++.|.++|+.+|++.+..|.|... . -+.+.+.+++.+.+.+...+.
T Consensus 147 ~~~a~kLv~la~~yGFDGw~IN~E~~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v 203 (653)
T 2w91_A 147 FPIARKLVDMAKYYGYDGYFINQETTGDLVKPLGEKMRQFMLYSKEYAAKVNHPIKY 203 (653)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEEEECSTTTGGGHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHHHHhCCCceEEeecccCCCCHHHHHHHHHHHHHHHHHHhccCCCcEE
Confidence 124688999999999999999999632 1 245566676767665444433
No 116
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=27.73 E-value=1.1e+02 Score=25.12 Aligned_cols=44 Identities=7% Similarity=-0.038 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEE
Q 013801 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (436)
Q Consensus 181 L~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~ 224 (436)
-+..|.++.+++++.|+.++.+.-+..+.+.+++++++..-.+.
T Consensus 54 ~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 97 (163)
T 3gkn_A 54 EGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLV 97 (163)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEE
Confidence 35778999999999999998888778888889998887664333
No 117
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=27.68 E-value=2.2e+02 Score=25.85 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC--hH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK--PE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~--~~--~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|++........ +.+ +.+.+ ||++..++.
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~-~~l~~-~iPvV~i~~ 102 (303)
T 3kke_A 29 VFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD----DML-AAVLE-GVPAVTINS 102 (303)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH----HHH-HHHHT-TSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH----HHH-HHHhC-CCCEEEECC
Confidence 55666788888999999999887632 22 2233444556899988854322211 123 44556 999988764
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 103 ~ 103 (303)
T 3kke_A 103 R 103 (303)
T ss_dssp C
T ss_pred c
Confidence 3
No 118
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=27.51 E-value=2.2e+02 Score=25.95 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCeEEEEE--CChHHHHHHHHHHhC--CCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 184 SVSDLRKNLQARGSDLVVRV--GKPETVLVELAKAIG--ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~--G~~~~~L~~L~~~~~--a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
++.-|+..+++.|-.++|-. |-...++..++.+.+ +..|+++..+.+.+ ..+.+++.+++.||+++.+.
T Consensus 33 ~~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~~~e--t~~~~~~~~~~~gi~~~v~~ 105 (252)
T 2o8v_A 33 AEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPE--TYRFIDELTDKLKLNLKVYR 105 (252)
T ss_dssp HHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCHH--HHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHHHHHHHHHHhCCceEEEc
Confidence 44556667777776666654 555667778887764 56677776665443 24566777788899998654
No 119
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=27.44 E-value=85 Score=28.51 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=57.5
Q ss_pred CcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHh
Q 013801 138 DNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI 217 (436)
Q Consensus 138 DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~ 217 (436)
|-+++..|.+.+ +|+|++++..+. .|..|= .++.+.|++.+.+|+|..|-..-.=.++++..
T Consensus 41 ~a~v~~~A~~~g---Ip~~~~~~~~~~-----------~r~~~d----~~~~~~l~~~~~Dliv~agy~~Il~~~~l~~~ 102 (211)
T 3p9x_A 41 GAKVVERVKVHE---IPVCALDPKTYP-----------SKEAYE----IEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAY 102 (211)
T ss_dssp SSHHHHHHHTTT---CCEEECCGGGSS-----------SHHHHH----HHHHHHHHHTTCCEEEESSCCSCCCHHHHHHH
T ss_pred CcHHHHHHHHcC---CCEEEeChhhcC-----------chhhhH----HHHHHHHHhcCCCEEEEeCchhhcCHHHHhhc
Confidence 457777777666 688888875542 122232 34556777889999998764322222455556
Q ss_pred CCCEEEEeccCCchHHHH---HHHHHHHHHhcCCcEEEee
Q 013801 218 GADAVYAHREVSHDEVKS---EEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 218 ~a~~V~~~~e~~p~~~~r---d~~l~~~l~~~gI~v~~~~ 254 (436)
.-..|..|-...|..+-. ...+.+-.+..|+.++.++
T Consensus 103 ~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~ 142 (211)
T 3p9x_A 103 EGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVD 142 (211)
T ss_dssp TTSEEEEESSCTTSSCSSCHHHHHHHTTCSEEEEEEEECC
T ss_pred cCCeEEECCccCCCCCCccHHHHHHHcCCCeEEEEEEEEc
Confidence 667888888776654322 2233333333455565543
No 120
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=27.42 E-value=2.3e+02 Score=27.07 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHh-------CCCeEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHHHhcCCc
Q 013801 180 FLIESVSDLRKNLQA-------RGSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIE 249 (436)
Q Consensus 180 FL~esL~~L~~~L~~-------~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---e~~p~~~~rd~~l~~~l~~~gI~ 249 (436)
=+.+-|..|.+++++ .+-.+++.+ +.+.-|++.+|.+.+.... +-+|...+. ..+.+.+++.+|.
T Consensus 181 ~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H----~af~Yfa~~yGL~~~~~~~~~~~~eps~~~l-~~l~~~ik~~~v~ 255 (321)
T 1xvl_A 181 VYSEQLKAIDRQLGADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTPKQV-QTVIEEVKTNNVP 255 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSSSSCSCCHHHH-HHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCCEEEEEC----chHHHHHHHCCCeEEEeeccCCCCCCCHHHH-HHHHHHHHHcCCc
Confidence 344566666666553 244566665 3577899999998776432 234444433 5677788888998
Q ss_pred EEEe
Q 013801 250 VKYF 253 (436)
Q Consensus 250 v~~~ 253 (436)
+..+
T Consensus 256 ~If~ 259 (321)
T 1xvl_A 256 TIFC 259 (321)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 121
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=27.33 E-value=1.9e+02 Score=27.11 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEC-ChHHHHHHHHHHhCCCEEEEec
Q 013801 184 SVSDLRKNLQARGSDLVVRVG-KPETVLVELAKAIGADAVYAHR 226 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G-~~~~~L~~L~~~~~a~~V~~~~ 226 (436)
-|+.|.+.+++.|++.++.+. ........++++.|+..++.+.
T Consensus 225 ~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld~ 268 (291)
T 1pq4_A 225 ELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLDP 268 (291)
T ss_dssp HHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEcC
Confidence 345666667777777777653 2334555666777777666543
No 122
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=27.31 E-value=1.7e+02 Score=26.46 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCE----------EEE-eccC---CchHHHHHHHHHHHHHhcCCc
Q 013801 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA----------VYA-HREV---SHDEVKSEEKIEAAMKDEGIE 249 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~----------V~~-~~e~---~p~~~~rd~~l~~~l~~~gI~ 249 (436)
....|++ ++.|+.+.+..|.+...+..+.++.+... |+. +.++ .+-....-+.+.+.+++.++.
T Consensus 24 ~~~al~~--~~~Gi~v~iaTGR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~ 101 (268)
T 1nf2_A 24 DRRNIEK--LSRKCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVH 101 (268)
T ss_dssp HHHHHHH--HTTTSEEEEECSSCHHHHHHHHHHHSSSCCCEEEGGGTEEEETTTEEEEECCBCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHH--HhCCCEEEEECCCChHHHHHHHHHhCCCCCeEEEeCCeEEECCCCCEEEecCCCHHHHHHHHHHHHhCCCE
Confidence 3444555 67899999999999888888888888753 332 1111 011223345666777777888
Q ss_pred EEEeeCCeee
Q 013801 250 VKYFWGSTLY 259 (436)
Q Consensus 250 v~~~~~~~Lv 259 (436)
+..+.+..++
T Consensus 102 ~~~~~~~~~~ 111 (268)
T 1nf2_A 102 WQAYIDDVLY 111 (268)
T ss_dssp EEEECSSCEE
T ss_pred EEEEECCEEE
Confidence 7766555444
No 123
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=27.27 E-value=3.3e+02 Score=24.20 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=46.6
Q ss_pred HHHHhCCCeEEEEECChHHHHHHHHHHhCC----CEEEEe----------------ccCCchHHHHHHHHHHHHHhcCCc
Q 013801 190 KNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAH----------------REVSHDEVKSEEKIEAAMKDEGIE 249 (436)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~----------------~e~~p~~~~rd~~l~~~l~~~gI~ 249 (436)
+.|++.|+.+.+..|.+...+..++++.+. ..+++. ...... .-+.+.+.+++.++.
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGa~i~~~~~~~~~~~~~l~~~---~~~~i~~~~~~~~~~ 108 (279)
T 4dw8_A 32 IRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWESKEMMYENVLPNE---VVPVLYECARTNHLS 108 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTGGGTTCEEEEGGGTEEEETTTCCEEEECCCCGG---GHHHHHHHHHHTTCE
T ss_pred HHHHHCCCEEEEEcCCChHHHHHHHHHhCCCCCCCEEEEeCCeEEEECCCCeEEEEecCCHH---HHHHHHHHHHHcCCE
Confidence 455678999999999998888888888875 333221 111222 234566778888999
Q ss_pred EEEeeCCeeee
Q 013801 250 VKYFWGSTLYH 260 (436)
Q Consensus 250 v~~~~~~~Lv~ 260 (436)
+..+.+..++.
T Consensus 109 ~~~~~~~~~~~ 119 (279)
T 4dw8_A 109 ILTYDGAEIVT 119 (279)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 88887776665
No 124
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=27.18 E-value=1.2e+02 Score=24.37 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 207 ETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 207 ~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
.+.+.+++++++++.|+........ ..-+++...|.+.|+.+..
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~~~--~~~~~i~~~l~~~gv~v~~ 97 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSASQ--VQKKVIIESLAKLHVEVLT 97 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTSCH--HHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCH--HHHHHHHHHHHHcCCeEEE
Confidence 3568899999999999887543322 2345677889999999875
No 125
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=27.13 E-value=2.4e+02 Score=24.91 Aligned_cols=65 Identities=11% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEE--------------eccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA--------------HREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~--------------~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
+.|++.|+.+.+..|.+...+..++++.+...+++ ..... ...-+.+.+.+++.|+.+..+.+
T Consensus 30 ~~l~~~G~~~~~aTGR~~~~~~~~~~~l~~~~~i~~nGa~i~~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~ 106 (258)
T 2pq0_A 30 RRLKQSGVYVAIATGRAPFMFEHVRKQLGIDSFVSFNGQYVVFEGNVLYKQPLR---REKVRALTEEAHKNGHPLVFMDA 106 (258)
T ss_dssp HHHHHTTCEEEEECSSCGGGSHHHHHHHTCCCEEEGGGTEEEETTEEEEECCCC---HHHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHCCCEEEEECCCChHHHHHHHHhcCCCEEEECCCCEEEECCEEEEEecCC---HHHHHHHHHHHHhCCCeEEEEeC
Confidence 45667899999999987777777777776553332 11111 23334566778888888876654
Q ss_pred Ce
Q 013801 256 ST 257 (436)
Q Consensus 256 ~~ 257 (436)
..
T Consensus 107 ~~ 108 (258)
T 2pq0_A 107 EK 108 (258)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 126
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=27.12 E-value=3.3e+02 Score=24.47 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEE---CChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRV---GKPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~---G~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
|..+-+..+++.+++.|..+.+.. ++.. +.+..+ ...+++.|++..... .. .+.. .+.+.+.||++..+
T Consensus 18 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~~~-~~--~~~~-~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 18 YWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQA-IAKNPAGIAISAIDP-VE--LTDT-INKAVDAGIPIVLF 92 (305)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHH-HHHCCSEEEECCSST-TT--THHH-HHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHH-HHhCCCEEEEcCCCH-HH--HHHH-HHHHHHCCCcEEEE
Confidence 666777888889999999998843 3333 223333 346899988754211 11 1222 34456689999887
Q ss_pred eCC
Q 013801 254 WGS 256 (436)
Q Consensus 254 ~~~ 256 (436)
+..
T Consensus 93 ~~~ 95 (305)
T 3g1w_A 93 DSG 95 (305)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 127
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=26.95 E-value=1.7e+02 Score=27.27 Aligned_cols=69 Identities=9% Similarity=0.109 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhC-----CCeEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 180 FLIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 180 FL~esL~~L~~~L~~~-----Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
=+.+-|..|.+++++. +-.+++.+ +.+.-|++.+|.+.+.... +-+|...+ -+++.+.+++.+|.+.
T Consensus 153 ~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~i 227 (284)
T 2prs_A 153 DFEAQLASTETQVGNELAPLKGKGYFVFH----DAYGYFEKQFGLTPLGHFTVNPEIQPGAQR-LHEIRTQLVEQKATCV 227 (284)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTCCEEEEE----SCCHHHHHHHTCCCCEEEESSTTSCCCHHH-HHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEC----ccHHHHHHHCCCeEeEeeccCCCCCCCHHH-HHHHHHHHHHcCCCEE
Confidence 3445566666655432 56677666 3577899999988664432 33444443 3567778888999987
Q ss_pred Ee
Q 013801 252 YF 253 (436)
Q Consensus 252 ~~ 253 (436)
.+
T Consensus 228 f~ 229 (284)
T 2prs_A 228 FA 229 (284)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 128
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=26.89 E-value=87 Score=29.57 Aligned_cols=69 Identities=7% Similarity=0.075 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhC-----CCeEEEEECChHHHHHHHHHHhCCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 180 FLIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 180 FL~esL~~L~~~L~~~-----Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
=+.+-|..|.+++++. |-.+++.+ +.+.-|++.+|.+.+.... +-+|... .-.++.+.+++.+|++..+
T Consensus 169 ~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~eps~~-~l~~l~~~ik~~~v~~If~ 243 (291)
T 1pq4_A 169 AFLAELERLNQELGQILQPLPQRKFIVFH----PSWAYFARDYNLVQIPIEVEGQEPSAQ-ELKQLIDTAKENNLTMVFG 243 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCEEEESS----CCCHHHHHHTTCEEEESCBTTBCCCHH-HHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEC----CchHHHHHHCCCEEeecccCCCCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 3445566666655532 44454443 2466788888887664432 1223333 3355667777788877644
No 129
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=26.73 E-value=2.1e+02 Score=23.81 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 210 LVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 210 L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
+.+++++..++-|+...+-......-...|+..+-+.||++.
T Consensus 88 i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 88 IRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp HHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeE
Confidence 445555555555555443322223334455555556666654
No 130
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=26.48 E-value=2.3e+02 Score=25.21 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEC--C----------hHHHHHHHHHHhCCCEEEEeccCCch-----H-HHHHHHHHHHHH
Q 013801 183 ESVSDLRKNLQARGSDLVVRVG--K----------PETVLVELAKAIGADAVYAHREVSHD-----E-VKSEEKIEAAMK 244 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G--~----------~~~~L~~L~~~~~a~~V~~~~e~~p~-----~-~~rd~~l~~~l~ 244 (436)
+.+..+++.|++.|+.+..+.. . ......+++++.|+..|.++...... . .+.-+.+.+.++
T Consensus 51 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~ 130 (272)
T 2q02_A 51 LNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFA 130 (272)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999865542 1 12334467788999999876432211 1 333345556667
Q ss_pred hcCCcEE
Q 013801 245 DEGIEVK 251 (436)
Q Consensus 245 ~~gI~v~ 251 (436)
+.||.+-
T Consensus 131 ~~gv~l~ 137 (272)
T 2q02_A 131 RYDIQGL 137 (272)
T ss_dssp TTTCEEE
T ss_pred HcCCEEE
Confidence 7898774
No 131
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=26.30 E-value=1e+02 Score=26.35 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCC----CEEEEeccC
Q 013801 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~e~ 228 (436)
++.++-+.|++.|+.+.+..+.....+..+++..++ +.|++.+++
T Consensus 90 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 138 (226)
T 3mc1_A 90 GIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYFDAIVGSSLD 138 (226)
T ss_dssp THHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTT
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhheeeeeccCCC
Confidence 344445556667777777766666666666666553 455555444
No 132
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=25.79 E-value=2.5e+02 Score=26.11 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~~--~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|+.+-+..+++.+++.|..+.+... +... .+.+.+...+++.|++..... .. ...+.+.+.|+++..++
T Consensus 82 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~-~~-----~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 82 VFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH-SE-----AARAMLDAAGIPVVEIM 154 (344)
T ss_dssp SHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC-CH-----HHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC-CH-----HHHHHHHhCCCCEEEEe
Confidence 4556678888899999999988763 2222 122233346899888754221 11 23445677899999885
No 133
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=25.71 E-value=81 Score=26.82 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEe
Q 013801 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (436)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~ 225 (436)
+=+.|++.|+.+.+..|.....+..++++.++..++..
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~ 80 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLG 80 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecC
Confidence 44456778999999999988889999999999987643
No 134
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=25.49 E-value=2.7e+02 Score=25.84 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC--hH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK--PE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~--~~--~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|+.+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|++....... .+.+.+.+.|+++..+++
T Consensus 76 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 76 VFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE------PFERILSQHALPVVYMMD 149 (339)
T ss_dssp TTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT------THHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH------HHHHHHhcCCCCEEEEee
Confidence 44566677888999999999887632 22 122233344689988775422211 233456678999988754
No 135
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=25.42 E-value=1.9e+02 Score=23.90 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
....+.++.-.+.-|+...+.+|.+. ...+...|.+.+|++..+
T Consensus 30 ~~v~Kai~~gka~LViiA~D~~p~~~--~~~i~~lc~~~~Ip~~~v 73 (126)
T 2xzm_U 30 HEVLRTIEAKQALFVCVAEDCDQGNY--VKLVKALCAKNEIKYVSV 73 (126)
T ss_dssp HHHHHHHHHTCCSEEEEESSCCSTTH--HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHH--HHHHHHHHHHhCCCEEEE
Confidence 34455667778999999999877554 356788899999999864
No 136
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=25.39 E-value=1.2e+02 Score=27.61 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=63.4
Q ss_pred CeEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Q 013801 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (436)
Q Consensus 124 ~~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~ 203 (436)
..++|.=.+| -+++..|.+.+ +|+|+++.+.+. .|..|= .++.+.|++.+.+|+|..
T Consensus 40 eI~~Vis~~~-----a~~~~~A~~~g---Ip~~~~~~~~~~-----------~r~~~d----~~~~~~l~~~~~Dlivla 96 (215)
T 3da8_A 40 RVVAVGVDRE-----CRAAEIAAEAS---VPVFTVRLADHP-----------SRDAWD----VAITAATAAHEPDLVVSA 96 (215)
T ss_dssp EEEEEEESSC-----CHHHHHHHHTT---CCEEECCGGGSS-----------SHHHHH----HHHHHHHHTTCCSEEEEE
T ss_pred eEEEEEeCCc-----hHHHHHHHHcC---CCEEEeCccccc-----------chhhhh----HHHHHHHHhhCCCEEEEc
Confidence 3455655555 25787887777 678887643321 244442 456678889999999987
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCchHHHH---HHHHHHHHHhcCCcEEEe
Q 013801 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKS---EEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~r---d~~l~~~l~~~gI~v~~~ 253 (436)
|-..-.=.++++.+.-..|..|-...|..+-. ...+.+-.+..|+.++.+
T Consensus 97 gy~~iL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v 149 (215)
T 3da8_A 97 GFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLV 149 (215)
T ss_dssp ECCSCCCHHHHHHHTTTEEEEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEEC
T ss_pred CchhhCCHHHHhhccCCeEEeCcccccCCCCchHHHHHHHcCCCeEEEEEEEE
Confidence 64221122455566667888888776654322 233443333446666554
No 137
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=25.32 E-value=1.9e+02 Score=24.95 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCC----CEEEEeccC
Q 013801 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~e~ 228 (436)
.++.++-+.|++.|+.+.+..+.....+..+++..|+ +.|++..++
T Consensus 108 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 157 (240)
T 2no4_A 108 PDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDL 157 (240)
T ss_dssp TTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGT
T ss_pred CCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcHHHcCEEEEcccc
Confidence 3455566678888999988888777777777777764 567766554
No 138
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=25.02 E-value=3e+02 Score=24.47 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHh-cCCcEEEe
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD-EGIEVKYF 253 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~-~gI~v~~~ 253 (436)
|..+-+..+++.+++.|..+.+... +.. +.+..+. ..+++.|++..... .. ..+ +.+.+ .||++..+
T Consensus 35 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~-~~----~~~-~~l~~~~~iPvV~~ 107 (296)
T 3brq_A 35 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLL-DLRCDAIMIYPRFL-SV----DEI-DDIIDAHSQPIMVL 107 (296)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHH-HTTCSEEEEECSSS-CH----HHH-HHHHHTCSSCEEEE
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEecCCC-Ch----HHH-HHHHhcCCCCEEEE
Confidence 4556667778888999999988753 322 2344444 46899888754221 11 223 34566 79999887
Q ss_pred eC
Q 013801 254 WG 255 (436)
Q Consensus 254 ~~ 255 (436)
+.
T Consensus 108 ~~ 109 (296)
T 3brq_A 108 NR 109 (296)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 139
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=24.78 E-value=3.2e+02 Score=24.04 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCeEEEEECC-----------------------hHHHHHHHHHHhCCCEEEEeccCCc----hH-----
Q 013801 185 VSDLRKNLQARGSDLVVRVGK-----------------------PETVLVELAKAIGADAVYAHREVSH----DE----- 232 (436)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~-----------------------~~~~L~~L~~~~~a~~V~~~~e~~p----~~----- 232 (436)
+..+++.|++.|+.+..+... ......+++++.|+..|+++....+ .+
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~ 121 (260)
T 1k77_A 42 TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAV 121 (260)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEecCCcccccccCCCCCChhHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHH
Confidence 577889999999999865321 1133346778899999988643322 11
Q ss_pred -HHHHHHHHHHHHhcCCcEE
Q 013801 233 -VKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 233 -~~rd~~l~~~l~~~gI~v~ 251 (436)
...-+.+.+.+++.||.+-
T Consensus 122 ~~~~l~~l~~~a~~~gv~l~ 141 (260)
T 1k77_A 122 FIDNIRYAADRFAPHGKRIL 141 (260)
T ss_dssp HHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEE
Confidence 1222344455667788774
No 140
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=24.75 E-value=3.4e+02 Score=24.89 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH---HHHHHHHHHhC--CCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIG--ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~--a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
|..+-+..+++.+++.|..+.+... +.. +.+..+.. .+ ++.|++... ... .....+ +.+.+.||++..
T Consensus 19 ~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~-~~~~vdgiIi~~~-~~~--~~~~~~-~~~~~~~iPvV~ 93 (332)
T 2rjo_A 19 YYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQ-KTGGNLVLNVDPN-DSA--DARVIV-EACSKAGAYVTT 93 (332)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHH-HTTTCEEEEECCS-SHH--HHHHHH-HHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH-CCCCCCEEEEeCC-CHH--HHHHHH-HHHHHCCCeEEE
Confidence 6677788888899999999988763 232 33444444 46 998887532 111 112223 445567999988
Q ss_pred eeC
Q 013801 253 FWG 255 (436)
Q Consensus 253 ~~~ 255 (436)
++.
T Consensus 94 ~~~ 96 (332)
T 2rjo_A 94 IWN 96 (332)
T ss_dssp ESC
T ss_pred ECC
Confidence 764
No 141
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=24.65 E-value=2.2e+02 Score=25.23 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|..+-+..+++.+++.|..+.+... +.. +.+..+ ...+++.|++...-. .. .. .+.+.+.||++..++
T Consensus 17 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgii~~~~~~-~~----~~-~~~l~~~~iPvV~~~ 89 (275)
T 3d8u_A 17 ACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTF-LESRPAGVVLFGSEH-SQ----RT-HQLLEASNTPVLEIA 89 (275)
T ss_dssp HHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHH-HTSCCCCEEEESSCC-CH----HH-HHHHHHHTCCEEEES
T ss_pred cHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHH-HhcCCCEEEEeCCCC-CH----HH-HHHHHhCCCCEEEEe
Confidence 6667778888899999999987653 322 223333 346788877654211 11 22 234556799998876
Q ss_pred C
Q 013801 255 G 255 (436)
Q Consensus 255 ~ 255 (436)
.
T Consensus 90 ~ 90 (275)
T 3d8u_A 90 E 90 (275)
T ss_dssp S
T ss_pred e
Confidence 4
No 142
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=24.47 E-value=86 Score=28.54 Aligned_cols=102 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred cCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHH
Q 013801 137 HDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216 (436)
Q Consensus 137 ~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~ 216 (436)
.|-.++..|.+.+ +|+|++++..+ +.|..|= .++.+.|++.+.+|+|..|-..-.=.++++.
T Consensus 42 ~~a~~~~~A~~~g---Ip~~~~~~~~~-----------~~r~~~d----~~~~~~l~~~~~Dliv~agy~~il~~~~l~~ 103 (215)
T 3tqr_A 42 ADAYGLKRAQQAD---IPTHIIPHEEF-----------PSRTDFE----STLQKTIDHYDPKLIVLAGFMRKLGKAFVSH 103 (215)
T ss_dssp TTCHHHHHHHHTT---CCEEECCGGGS-----------SSHHHHH----HHHHHHHHTTCCSEEEESSCCSCCCHHHHHH
T ss_pred cchHHHHHHHHcC---CCEEEeCcccc-----------CchhHhH----HHHHHHHHhcCCCEEEEccchhhCCHHHHhh
Q ss_pred hCCCEEEEeccCCchHH---HHHHHHHHHHHhcCCcEEEeeCC
Q 013801 217 IGADAVYAHREVSHDEV---KSEEKIEAAMKDEGIEVKYFWGS 256 (436)
Q Consensus 217 ~~a~~V~~~~e~~p~~~---~rd~~l~~~l~~~gI~v~~~~~~ 256 (436)
+.-..|..|-...|..+ -....+.+-.+..|+.++.++..
T Consensus 104 ~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~ 146 (215)
T 3tqr_A 104 YSGRMINIHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTED 146 (215)
T ss_dssp TTTSEEEEESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECC-C
T ss_pred ccCCeEEeCcccCCCCCChhHHHHHHHcCCCeEEEEEEEEcCC
No 143
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=24.27 E-value=1.6e+02 Score=25.04 Aligned_cols=55 Identities=7% Similarity=0.161 Sum_probs=38.8
Q ss_pred HHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCC
Q 013801 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (436)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI 248 (436)
+=+.|++.|+.+.+..|.....+..++++.|+..++.... |.. ..++..+++.|+
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~k--pk~----~~~~~~~~~~g~ 115 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQS--NKL----IAFSDLLEKLAI 115 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCS--CSH----HHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCCC--CCH----HHHHHHHHHcCC
Confidence 3456778899999999988888999999999998775432 222 234445555565
No 144
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=24.13 E-value=2.7e+02 Score=24.94 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEEECCh-----------------------HHHHHHHHHHhCCCEEEEeccCCchH---------
Q 013801 185 VSDLRKNLQARGSDLVVRVGKP-----------------------ETVLVELAKAIGADAVYAHREVSHDE--------- 232 (436)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~-----------------------~~~L~~L~~~~~a~~V~~~~e~~p~~--------- 232 (436)
++.+++.|++.|+.+..+.... .....+++++.|+..|+++.. .+..
T Consensus 50 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g-~~~~~~~~~~~~~ 128 (269)
T 3ngf_A 50 ADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDCRTLHAMSG-ITEGLDRKACEET 128 (269)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHHHHHTTCCEEECCBC-BCTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEccC-CCCCCCHHHHHHH
Q ss_pred -HHHHHHHHHHHHhcCCcE
Q 013801 233 -VKSEEKIEAAMKDEGIEV 250 (436)
Q Consensus 233 -~~rd~~l~~~l~~~gI~v 250 (436)
.+.-+.+.+.+++.||.+
T Consensus 129 ~~~~l~~l~~~a~~~Gv~l 147 (269)
T 3ngf_A 129 FIENFRYAADKLAPHGITV 147 (269)
T ss_dssp HHHHHHHHHHHHGGGTCEE
T ss_pred HHHHHHHHHHHHHHcCCEE
No 145
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=24.03 E-value=4e+02 Score=24.45 Aligned_cols=70 Identities=7% Similarity=0.046 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~~--~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-+..+++.+++.|..+.+... +... .+.+.+...+++.|++....... ..+ +.+.+.|+++..++.
T Consensus 77 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-----~~~-~~l~~~~iPvV~~~~ 150 (332)
T 2o20_A 77 YFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDE-----KIR-TSLKNSRTPVVLVGT 150 (332)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCCH-----HHH-HHHHHHCCCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH-----HHH-HHHHhCCCCEEEEcc
Confidence 6667778888899999999988753 3221 22233345689998875421111 122 334567999988764
No 146
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=24.00 E-value=76 Score=29.49 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=9.6
Q ss_pred HHHHHHHhCCCEEEEecc
Q 013801 210 LVELAKAIGADAVYAHRE 227 (436)
Q Consensus 210 L~~L~~~~~a~~V~~~~e 227 (436)
+.+.|++.|+..++...+
T Consensus 149 ~i~~l~~~gi~v~ivSgg 166 (297)
T 4fe3_A 149 FFGKLQQHGIPVFIFSAG 166 (297)
T ss_dssp HHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHcCCeEEEEeCC
Confidence 344555556665555543
No 147
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=23.95 E-value=2.2e+02 Score=25.58 Aligned_cols=69 Identities=9% Similarity=-0.072 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--Ch---HHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KP---ETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~---~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|..+-+..+++.+++.|..+.+... +. .+.+.. +...+++.|++....... .. .+.+.+.||++..++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~vdgiIi~~~~~~~-----~~-~~~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 22 ILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDL-IRSGNVDGFVLSSINYND-----PR-VQFLLKQKFPFVAFG 94 (287)
T ss_dssp THHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHH-HHTTCCSEEEECSCCTTC-----HH-HHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHH-HHcCCCCEEEEeecCCCc-----HH-HHHHHhcCCCEEEEC
Confidence 5566778888889999999987642 22 233443 445689998875422111 12 234556799998876
Q ss_pred C
Q 013801 255 G 255 (436)
Q Consensus 255 ~ 255 (436)
.
T Consensus 95 ~ 95 (287)
T 3bbl_A 95 R 95 (287)
T ss_dssp C
T ss_pred C
Confidence 4
No 148
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=23.66 E-value=3.5e+02 Score=24.18 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|..+-+..+++.+++.|..+.+... +.. +.+..+ ...+++.|++....... ..+.+.+.+.||++..++
T Consensus 34 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgii~~~~~~~~-----~~~~~~~~~~~iPvV~~~ 107 (293)
T 2iks_A 34 SYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHL-LQRQVDAIIVSTSLPPE-----HPFYQRWANDPFPIVALD 107 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHTTCSEEEECCSSCTT-----CHHHHTTTTSSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeCCCCCc-----HHHHHHHHhCCCCEEEEC
Confidence 6667778888899999999988763 322 223333 45689998875422111 112344566799998876
Q ss_pred CC
Q 013801 255 GS 256 (436)
Q Consensus 255 ~~ 256 (436)
..
T Consensus 108 ~~ 109 (293)
T 2iks_A 108 RA 109 (293)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 149
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=23.43 E-value=4.3e+02 Score=24.16 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhC-CCeEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 180 FLIESVSDLRKNLQAR-GSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 180 FL~esL~~L~~~L~~~-Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
|..+-+..+++.+++. |..+.+... +.. +.+..+. ..+++.|++... ... ..+..+ +.+.+.||++..+
T Consensus 19 ~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~-~~~--~~~~~~-~~~~~~~iPvV~~ 93 (325)
T 2x7x_A 19 WRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFM-DEGVDLLIISAN-EAA--PMTPIV-EEAYQKGIPVILV 93 (325)
T ss_dssp HHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS-SHH--HHHHHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-CHH--HHHHHH-HHHHHCCCeEEEe
Confidence 5556677788889998 999988763 332 3344444 468999988532 111 112233 4456679999887
Q ss_pred eC
Q 013801 254 WG 255 (436)
Q Consensus 254 ~~ 255 (436)
+.
T Consensus 94 ~~ 95 (325)
T 2x7x_A 94 DR 95 (325)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 150
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=23.24 E-value=1.3e+02 Score=27.01 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEE--C-----Ch---------HHHHHHHHHHhCCCEEEEeccCCc-----hH------HH
Q 013801 182 IESVSDLRKNLQARGSDLVVRV--G-----KP---------ETVLVELAKAIGADAVYAHREVSH-----DE------VK 234 (436)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~--G-----~~---------~~~L~~L~~~~~a~~V~~~~e~~p-----~~------~~ 234 (436)
-..++.+++.|++.|+.+.... + ++ .....+++++.|+..|.++....+ .+ ..
T Consensus 44 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~ 123 (275)
T 3qc0_A 44 AIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVE 123 (275)
T ss_dssp HHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHH
Confidence 3567899999999999886443 1 11 223446778899999988753222 11 12
Q ss_pred HHHHHHHHHHhcCCcEE
Q 013801 235 SEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 235 rd~~l~~~l~~~gI~v~ 251 (436)
.-+.+.+.+++.||.+-
T Consensus 124 ~l~~l~~~a~~~gv~l~ 140 (275)
T 3qc0_A 124 GIAAVLPHARAAGVPLA 140 (275)
T ss_dssp HHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 23444455667799875
No 151
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=23.18 E-value=2e+02 Score=24.50 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCC----CEEEEecc
Q 013801 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHRE 227 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~e 227 (436)
++.++-+.|++.|+.+.+..+.....+..+++..++ +.|++..+
T Consensus 99 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~ 146 (232)
T 1zrn_A 99 EVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDP 146 (232)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEESGG
T ss_pred cHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChHhhhheEEEecc
Confidence 444555567777888877777666666666666653 45665544
No 152
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=23.07 E-value=88 Score=27.05 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhC
Q 013801 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218 (436)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~ 218 (436)
+.++-+.|++.|+.+.+..+.....+..+++..+
T Consensus 109 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~ 142 (237)
T 4ex6_A 109 VLEGLDRLSAAGFRLAMATSKVEKAARAIAELTG 142 (237)
T ss_dssp HHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcC
Confidence 3455555666666666666555555555555544
No 153
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=23.03 E-value=4e+02 Score=23.61 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHh-cCCcEEEe
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD-EGIEVKYF 253 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~-~gI~v~~~ 253 (436)
|..+-+..+++.+++.|..+.+... +.. +.+..+. ..+++.|++...-... .+.+.+.+ .||++..+
T Consensus 21 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~------~~~~~l~~~~~iPvV~~ 93 (289)
T 1dbq_A 21 YFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCSEYPE------PLLAMLEEYRHIPMVVM 93 (289)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEEECSCCCH------HHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHH-hCCCCEEEEEeccCCH------HHHHHHHhccCCCEEEE
Confidence 6667778888888999999988753 332 2233443 5689988875422211 12233444 69999887
Q ss_pred eCC
Q 013801 254 WGS 256 (436)
Q Consensus 254 ~~~ 256 (436)
+..
T Consensus 94 ~~~ 96 (289)
T 1dbq_A 94 DWG 96 (289)
T ss_dssp ECS
T ss_pred ccC
Confidence 653
No 154
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=23.03 E-value=1.7e+02 Score=24.66 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEECCh-HHHHHHHHHHhCCCEE
Q 013801 183 ESVSDLRKNLQARGSDLVVRVGKP-ETVLVELAKAIGADAV 222 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~-~~~L~~L~~~~~a~~V 222 (436)
.++.++=+.|++.|+.+.+..|.. ...+..+++..++...
T Consensus 71 ~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~~ 111 (187)
T 2wm8_A 71 PEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRY 111 (187)
T ss_dssp TTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTT
T ss_pred hhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHhh
Confidence 444555566777899999999887 6888888888887643
No 155
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=23.02 E-value=90 Score=26.49 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCC
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA 219 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a 219 (436)
.++-+.|++.|+++.+..+.....+..+++..|.
T Consensus 76 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l 109 (205)
T 3m9l_A 76 VELVRELAGRGYRLGILTRNARELAHVTLEAIGL 109 (205)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCc
Confidence 3334444555555555555444444444444443
No 156
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.99 E-value=3.2e+02 Score=25.51 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~~--~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|+.+-+..+++.+++.|..+.+... +... .+.+.+...+++.|++.... .. +.. .+.+.+.|+++..++.
T Consensus 80 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~~----~~~-~~~l~~~~iPvV~i~~ 153 (348)
T 3bil_A 80 YFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNE-EC----ANQ-LEDLQKQGMPVVLVDR 153 (348)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCG-GG----HHH-HHHHHHC-CCEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-CC----hHH-HHHHHhCCCCEEEEcc
Confidence 6667778888899999999988753 2221 22333345688888775321 11 122 3445668999988764
No 157
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=22.80 E-value=2.8e+02 Score=24.89 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=46.5
Q ss_pred HHHHhCCCeEEEEECChHHHHHHHHHHhCCC-EEEEec---------cC---CchHHHHHHHHHHHHHhcCCcEEEeeCC
Q 013801 190 KNLQARGSDLVVRVGKPETVLVELAKAIGAD-AVYAHR---------EV---SHDEVKSEEKIEAAMKDEGIEVKYFWGS 256 (436)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~-~V~~~~---------e~---~p~~~~rd~~l~~~l~~~gI~v~~~~~~ 256 (436)
+.|++.|+.+.+..|.+...+..+.+..+.. .+++.. +. .+-....-+.+.+.+++.++.+..+.+.
T Consensus 33 ~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (290)
T 3dnp_A 33 EYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEK 112 (290)
T ss_dssp HHHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSCEEEGGGTEEESSTTSCSEECCCCHHHHHHHHHHHHTSSCEEEEECSS
T ss_pred HHHHHCCCEEEEECCCChHHHHHHHHHcCCCCeEEEcCCeEEEcCCCCEEEecCCCHHHHHHHHHHHHHcCceEEEEECC
Confidence 3456789999999999888888898888876 222211 11 0111233456667888889998777666
Q ss_pred eeee
Q 013801 257 TLYH 260 (436)
Q Consensus 257 ~Lv~ 260 (436)
..+.
T Consensus 113 ~~~~ 116 (290)
T 3dnp_A 113 YSIG 116 (290)
T ss_dssp CEEE
T ss_pred cEEe
Confidence 5543
No 158
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=22.78 E-value=1.2e+02 Score=25.70 Aligned_cols=40 Identities=5% Similarity=-0.114 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCE
Q 013801 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA 221 (436)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~ 221 (436)
+..|.++.+++++.|+.++.+..+..+.+.++++++++.-
T Consensus 71 l~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f 110 (179)
T 3ixr_A 71 GLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTF 110 (179)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCce
Confidence 4678889999999999988888777788888888887653
No 159
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=22.77 E-value=2.7e+02 Score=24.75 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHH----hCCCEEEE-eccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA----IGADAVYA-HREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 179 ~FL~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~----~~a~~V~~-~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
.+|.++...+...+ ..|..++|-.-........++.. .|++.|++ ..+|..+..... .-.+.|++.||++..
T Consensus 68 ~Ai~~a~~~l~~~~-~~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~-~g~~~L~~aGI~V~~ 144 (190)
T 2nyt_A 68 AFFNTILPAFDPAL-RYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQ-AALKKLKEAGCKLRI 144 (190)
T ss_pred HHHHHHHHhcCccc-cCCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHHH-HHHHHHHHCCCEEEE
Confidence 45555443232222 23888887654333333333322 28998877 556532222122 444678889999985
No 160
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=22.48 E-value=2e+02 Score=25.77 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCeEEEEE-----C------ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 185 VSDLRKNLQARGSDLVVRV-----G------KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~-----G------~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
+..+++.|++.|+.+.... + +..+...+++++.|+..|.++........ .-+.+.+.+++.||.+.
T Consensus 53 ~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~-~l~~l~~~a~~~Gv~l~ 129 (264)
T 1yx1_A 53 TEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLPEQP-DLAALGRRLARHGLQLL 129 (264)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEEECCCSSC-CHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHcCCEEEEecchhhcCCchhHHHHHHHHHHHHHHcCCCEEEEecCCCCcHH-HHHHHHHHHHhcCCEEE
Confidence 4688889999999876532 1 33455667889999999988754321111 23556677788898774
No 161
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.47 E-value=3.2e+02 Score=22.35 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHhCCCeEEEEE-CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCC
Q 013801 189 RKNLQARGSDLVVRV-GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (436)
Q Consensus 189 ~~~L~~~Gi~L~v~~-G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI 248 (436)
..-|+..|.+++.+- .-+.+.+.+.+++.+++.|....-.+...... +.+.+.|++.|.
T Consensus 24 ~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~-~~~i~~l~~~g~ 83 (137)
T 1ccw_A 24 DHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDC-KGLRQKCDEAGL 83 (137)
T ss_dssp HHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHH-TTHHHHHHHTTC
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHH-HHHHHHHHhcCC
Confidence 345677899998764 34678888899999999998877666554433 344556666654
No 162
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=22.32 E-value=4e+02 Score=23.77 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCC-eEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 180 FLIESVSDLRKNLQARGS-DLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi-~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
|..+-+..+++.+++.|. .+.+... +.. +.+..+. ..+++.|++... .... .+.. .+.+.+.||++..+
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~-~~~~--~~~~-~~~~~~~~iPvV~~ 90 (309)
T 2fvy_A 16 FMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL-AKGVKALAINLV-DPAA--AGTV-IEKARGQNVPVVFF 90 (309)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS-SGGG--HHHH-HHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-Ccch--hHHH-HHHHHHCCCcEEEe
Confidence 666778888999999997 8887753 332 2333333 568999888532 1111 1222 34456689999887
Q ss_pred eCC
Q 013801 254 WGS 256 (436)
Q Consensus 254 ~~~ 256 (436)
+..
T Consensus 91 ~~~ 93 (309)
T 2fvy_A 91 NKE 93 (309)
T ss_dssp SSC
T ss_pred cCC
Confidence 653
No 163
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=22.26 E-value=1.6e+02 Score=27.50 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECChHH---HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGKPET---VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~~~~---~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~ 256 (436)
|..+-+..+++.+++.|..+.+...+..+ .+.+.+...+++.|++... .+.+.+.|+++..++..
T Consensus 78 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~------------~~~~~~~~iPvV~~~~~ 145 (333)
T 3jvd_A 78 YYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV------------VGSIAPEGIPMVQLTRG 145 (333)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC------------TTCCC-CCSCEEEECC-
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch------------HHHHhhCCCCEEEECcc
Confidence 67777888889999999999888643222 2333444568999988543 23456679999887654
No 164
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=22.14 E-value=1.3e+02 Score=26.47 Aligned_cols=7 Identities=43% Similarity=0.150 Sum_probs=2.9
Q ss_pred HHhCCCE
Q 013801 215 KAIGADA 221 (436)
Q Consensus 215 ~~~~a~~ 221 (436)
++.|+..
T Consensus 127 ~~~g~~~ 133 (243)
T 2hsz_A 127 KAQGYIL 133 (243)
T ss_dssp HHTTCEE
T ss_pred HHCCCEE
Confidence 3334443
No 165
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=22.06 E-value=1.5e+02 Score=28.04 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCc
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~ 249 (436)
.++-+.+++.|..+++..-+..+.+..+. +.|++.|+++.. ..+++.+++.|+.
T Consensus 258 ~~~v~~~~~~Gl~V~~WTVn~~~~~~~l~-~~GVDgIiTD~P---------~~~~~~l~~~g~~ 311 (313)
T 3l12_A 258 PELVAEAHDLGLIVLTWTVNEPEDIRRMA-TTGVDGIVTDYP---------GRTQRILIDMGLS 311 (313)
T ss_dssp HHHHHHHHHTTCEEEEBCCCSHHHHHHHH-HHTCSEEEESCH---------HHHHHHHHHTTCB
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HcCCCEEEeCCH---------HHHHHHHHhcCcC
Confidence 35566778889999988766556566655 469999999753 2456667777774
No 166
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=21.37 E-value=1.9e+02 Score=23.15 Aligned_cols=46 Identities=7% Similarity=0.098 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEC-------ChHHHHHHHHHHhCCC
Q 013801 175 PYRASFLIESVSDLRKNLQARGSDLVVRVG-------KPETVLVELAKAIGAD 220 (436)
Q Consensus 175 ~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G-------~~~~~L~~L~~~~~a~ 220 (436)
+.+...+...|..+.+.+++.|+.++.+.- +..+.+.++++++++.
T Consensus 43 ~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
T 3lor_A 43 PGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIK 95 (160)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCC
T ss_pred cchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCC
Confidence 344444557788888888888887776652 4566777777777655
No 167
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.10 E-value=1.3e+02 Score=27.17 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhCCCe-EEEEEC--ChH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSD-LVVRVG--KPE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~-L~v~~G--~~~--~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|..+-+..+++.+++.|.. +.+... +.. ..+.+.+...+++.|++..+ .+ +.+.+.||++..++
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~----------~~-~~~~~~~iPvV~~~ 92 (277)
T 3hs3_A 24 FYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAF----------TI-PPNFHLNTPLVMYD 92 (277)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECC----------CC-CTTCCCSSCEEEES
T ss_pred hHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcch----------HH-HHHHhCCCCEEEEc
Confidence 6777788889999999999 777653 322 22334455568999887641 11 23566799998876
Q ss_pred CC
Q 013801 255 GS 256 (436)
Q Consensus 255 ~~ 256 (436)
..
T Consensus 93 ~~ 94 (277)
T 3hs3_A 93 SA 94 (277)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 168
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=21.10 E-value=2.4e+02 Score=25.56 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=42.1
Q ss_pred HHHhCCCeEEEEECChHHHHHHHHHHhCCC---------------EEEEeccCCchHHHHHHHHHHHHHhc--CCcEEEe
Q 013801 191 NLQARGSDLVVRVGKPETVLVELAKAIGAD---------------AVYAHREVSHDEVKSEEKIEAAMKDE--GIEVKYF 253 (436)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~---------------~V~~~~e~~p~~~~rd~~l~~~l~~~--gI~v~~~ 253 (436)
+|++.|+.+.+..|.+...+..+.++.+.. .+....... ...-+.+.+.+.+. ++.+..+
T Consensus 50 ~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l~---~~~~~~i~~~~~~~~~~~~~~~~ 126 (283)
T 3dao_A 50 RLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYPMD---EDIWKGMCRMVRDELPACDYFAA 126 (283)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHTGGGGGGCEEEETTTTEEECSSCEEEECCCC---HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHcCCCcEEEECCCcEEEECCEEEEEecCC---HHHHHHHHHHHHHhcCCceEEEE
Confidence 456789999999999888888887766543 122222222 22234556666766 8887766
Q ss_pred eCCeeee
Q 013801 254 WGSTLYH 260 (436)
Q Consensus 254 ~~~~Lv~ 260 (436)
....++-
T Consensus 127 ~~~~~~~ 133 (283)
T 3dao_A 127 TPDFCFA 133 (283)
T ss_dssp CSSCEEE
T ss_pred eCCeEEE
Confidence 6555443
No 169
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=20.84 E-value=3.5e+02 Score=22.17 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCC----CEEEEeccCCchHHHHHHHHHHHHHhcCC
Q 013801 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (436)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~e~~p~~~~rd~~l~~~l~~~gI 248 (436)
+.++.++-+.|++.|+++.+..+.....+..+++..++ +.|++..++...- ---+.++..|++.|+
T Consensus 91 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~k-p~~~~~~~~~~~~~~ 160 (214)
T 3e58_A 91 FPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGFFDIVLSGEEFKESK-PNPEIYLTALKQLNV 160 (214)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGCSSCT-TSSHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHhheeeEeecccccCCC-CChHHHHHHHHHcCC
Confidence 34566777788899999999988888888888888775 5677766543211 001234445555565
No 170
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=20.79 E-value=3.3e+02 Score=25.49 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhC-----C--CeEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHHHhc
Q 013801 177 RASFLIESVSDLRKNLQAR-----G--SDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDE 246 (436)
Q Consensus 177 r~~FL~esL~~L~~~L~~~-----G--i~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---e~~p~~~~rd~~l~~~l~~~ 246 (436)
+..=+.+-|..|.+++++. + -.+++.+ +.+.-|++.+|.+.+.... +-+|... .-+.+.+.+++.
T Consensus 157 N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~~-~l~~l~~~ik~~ 231 (294)
T 3hh8_A 157 NLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSE----GCFKYFSKAYGVPSAYIWEINTEEEGTPD-QISSLIEKLKVI 231 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEE----SCCHHHHHHHTCCEEEEESSCCSCCCCHH-HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCccCcEEEEEC----ChHHHHHHHcCCceeeccccCCCCCCCHH-HHHHHHHHHHHc
Confidence 3344556677887777653 1 4466655 3577899999999776532 2334433 335677788889
Q ss_pred CCcEEEe
Q 013801 247 GIEVKYF 253 (436)
Q Consensus 247 gI~v~~~ 253 (436)
+|++..+
T Consensus 232 ~v~~if~ 238 (294)
T 3hh8_A 232 KPSALFV 238 (294)
T ss_dssp CCSCEEE
T ss_pred CCCEEEE
Confidence 9988754
No 171
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=20.56 E-value=35 Score=31.00 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEE---CChHHHHHHHHHHhCCCEEEEeccC---CchHHHHHHHHHHHHHhcCCcEEE
Q 013801 183 ESVSDLRKNLQARGSDLVVRV---GKPETVLVELAKAIGADAVYAHREV---SHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~---G~~~~~L~~L~~~~~a~~V~~~~e~---~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
++|+-..+..+++||.-+|+- |.....+.+.+ .+ +-|.+.-.+ +|+...++..+++.|++.|+++.+
T Consensus 38 ~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 110 (206)
T 1t57_A 38 RVLELVGERADQLGIRNFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 110 (206)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 445556667777799988876 44443333322 13 444444333 355667788889999999998863
No 172
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.37 E-value=1.6e+02 Score=28.01 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHHHhcCCcE
Q 013801 179 SFLIESVSDLRKNLQA-----RGSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEV 250 (436)
Q Consensus 179 ~FL~esL~~L~~~L~~-----~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---e~~p~~~~rd~~l~~~l~~~gI~v 250 (436)
.-+.+-|..|.+++++ .+-.+++.+ +.+..|++.+|.+.+.... +-+|...+ -.+|.+.+++.+|++
T Consensus 168 ~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~ 242 (312)
T 2o1e_A 168 KEYIAKLQDLDKLYRTTAKKAEKKEFITQH----TAFGYLAKEYGLKQVPIAGLSPDQEPSAAS-LAKLKTYAKEHNVKV 242 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCCEEEESS----CTTHHHHHHTTCEEEECSSCCSSSCCCHHH-HHHHHHHTTSSCCCE
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEEEC----CchHHHHHHCCCeEEEeeccCCCCCCCHHH-HHHHHHHHHHcCCCE
Confidence 3345566666665553 244444443 3688999999998775422 23344333 356777888899988
Q ss_pred EE
Q 013801 251 KY 252 (436)
Q Consensus 251 ~~ 252 (436)
..
T Consensus 243 If 244 (312)
T 2o1e_A 243 IY 244 (312)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 173
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=20.36 E-value=2.7e+02 Score=25.07 Aligned_cols=54 Identities=4% Similarity=0.029 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEC-----ChHHHHHHHHHHhCCCEEEEeccC
Q 013801 175 PYRASFLIESVSDLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREV 228 (436)
Q Consensus 175 ~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G-----~~~~~L~~L~~~~~a~~V~~~~e~ 228 (436)
...+..+.++|+.+.+..++.|+.|.+-.- ...+.+.+++++.+-..|-+.-+.
T Consensus 115 ~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~~~vg~~~D~ 173 (286)
T 3dx5_A 115 QQERQEYVNRIRMICELFAQHNMYVLLETHPNTLTDTLPSTLELLGEVDHPNLKINLDF 173 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSTTSSHHHHHHHHHHHCCTTEEEEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEecCCCcCcCCHHHHHHHHHhcCCCCeEEEecc
Confidence 456678899999999999999999887642 245667888888876666555544
No 174
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=20.34 E-value=2.8e+02 Score=23.34 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEECChH---HHHHHHHHHhCC----CEEEEeccC
Q 013801 181 LIESVSDLRKNLQARGSDLVVRVGKPE---TVLVELAKAIGA----DAVYAHREV 228 (436)
Q Consensus 181 L~esL~~L~~~L~~~Gi~L~v~~G~~~---~~L~~L~~~~~a----~~V~~~~e~ 228 (436)
++.++.++=+.|++.|+++.+..+... +.+..+++..|+ +.|++..+.
T Consensus 35 ~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~ 89 (189)
T 3ib6_A 35 LRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSE 89 (189)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCTT
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEcccc
Confidence 456677777888999999999987654 778888888886 467776553
No 175
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.30 E-value=2.8e+02 Score=24.85 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC----ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG----KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G----~~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
|..+-+..+++.+++.|..+.+... +.. +.+..+. ..+++.|++.... ... ....+ +.+. .||++..
T Consensus 19 ~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~-~~~--~~~~~-~~~~-~~iPvV~ 92 (304)
T 3o1i_D 19 YWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCT-QWGANAIILGTVD-PHA--YEHNL-KSWV-GNTPVFA 92 (304)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHH-HHTCSEEEECCSS-TTS--STTTH-HHHT-TTSCEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCC-hhH--HHHHH-HHHc-CCCCEEE
Confidence 6667778888889999999998864 322 2333333 4689998876422 110 01123 3445 7999998
Q ss_pred eeCC
Q 013801 253 FWGS 256 (436)
Q Consensus 253 ~~~~ 256 (436)
++..
T Consensus 93 ~~~~ 96 (304)
T 3o1i_D 93 TVNQ 96 (304)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 7543
No 176
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=20.17 E-value=1.8e+02 Score=26.12 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred cCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHH
Q 013801 137 HDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216 (436)
Q Consensus 137 ~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~ 216 (436)
.+-.++..|.+.+ +|+|++++..+. .|..|= .++.+.|++.+.+|+|..|-..-.=.++++.
T Consensus 38 ~~~~~~~~A~~~g---Ip~~~~~~~~~~-----------~r~~~~----~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~ 99 (209)
T 1meo_A 38 AAVAGLDKAERAG---IPTRVINHKLYK-----------NRVEFD----SAIDLVLEEFSIDIVCLAGFMRILSGPFVQK 99 (209)
T ss_dssp TTCHHHHHHHHTT---CCEEECCGGGSS-----------SHHHHH----HHHHHHHHHTTCCEEEEESCCSCCCHHHHHH
T ss_pred CChHHHHHHHHcC---CCEEEECccccC-----------chhhhh----HHHHHHHHhcCCCEEEEcchhhhCCHHHHhh
Q ss_pred hCCCEEEEeccCCchHH---HHHHHHHHHHHhcCCcEEEeeCCe
Q 013801 217 IGADAVYAHREVSHDEV---KSEEKIEAAMKDEGIEVKYFWGST 257 (436)
Q Consensus 217 ~~a~~V~~~~e~~p~~~---~rd~~l~~~l~~~gI~v~~~~~~~ 257 (436)
..-..|..|-...|..+ -....+.+-.++.|+.++..+...
T Consensus 100 ~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~ 143 (209)
T 1meo_A 100 WNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDV 143 (209)
T ss_dssp TTTSEEEEESSSTTSSCSSCHHHHHHHHTCSEEEEEEEECCC--
T ss_pred hcCCEEEEccCcCcCCCCccHHHHHHHcCCCcEEEEEEEECCCC
Done!