Query 013801
Match_columns 436
No_of_seqs 129 out of 1254
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 17:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013801.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013801hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1owla2 c.28.1.1 (A:3-204) DNA 100.0 2.4E-39 1.7E-43 301.0 20.0 167 125-296 2-168 (202)
2 d1np7a2 c.28.1.1 (A:1-204) Cry 100.0 5.4E-39 3.9E-43 298.7 19.8 174 123-296 5-180 (204)
3 d1u3da2 c.28.1.1 (A:13-197) Cr 100.0 7.1E-37 5.2E-41 280.5 21.8 156 125-286 1-157 (185)
4 d2j07a2 c.28.1.1 (A:2-171) DNA 100.0 4.1E-35 3E-39 265.4 16.8 146 124-286 1-146 (170)
5 d1dnpa2 c.28.1.1 (A:1-200) DNA 100.0 2.4E-34 1.8E-38 266.7 19.5 154 125-285 2-160 (200)
6 d1np7a1 a.99.1.1 (A:205-483) C 99.7 6.6E-18 4.8E-22 163.0 3.0 86 334-436 6-93 (279)
7 d1dnpa1 a.99.1.1 (A:201-469) C 99.6 9.5E-18 6.9E-22 161.0 2.2 82 337-436 1-82 (269)
8 d1u3da1 a.99.1.1 (A:198-497) C 99.6 3.5E-17 2.5E-21 159.4 2.4 90 335-436 15-104 (300)
9 d1owla1 a.99.1.1 (A:205-475) C 99.6 8E-17 5.8E-21 154.5 2.1 86 336-436 2-87 (271)
10 d2j07a1 a.99.1.1 (A:172-405) C 99.6 3.8E-16 2.8E-20 146.3 3.2 77 337-436 5-81 (234)
11 d2z3va1 c.26.2.4 (A:2-136) Hyp 90.1 0.38 2.8E-05 37.8 7.4 85 140-227 16-107 (135)
12 d2d13a1 c.26.2.1 (A:2-227) Hyp 88.3 0.66 4.8E-05 41.0 8.2 98 139-251 17-119 (226)
13 d1mjha_ c.26.2.4 (A:) "Hypothe 87.6 1.2 8.7E-05 35.8 9.0 117 137-253 15-155 (160)
14 d2gm3a1 c.26.2.4 (A:5-175) Put 83.2 4.5 0.00033 32.7 10.7 46 182-227 82-129 (171)
15 d2b8ea1 c.108.1.7 (A:416-434,A 77.3 2.4 0.00017 34.0 6.5 47 185-233 26-72 (135)
16 d1tq8a_ c.26.2.4 (A:) Hypothet 71.4 4.3 0.00031 31.5 6.7 74 181-254 67-145 (147)
17 d1jmva_ c.26.2.4 (A:) Universa 67.5 22 0.0016 26.7 12.9 114 133-252 10-135 (140)
18 d1b43a2 c.120.1.2 (A:1-219) Fl 62.7 9.2 0.00067 32.7 7.6 37 188-224 134-170 (219)
19 d2c4va1 c.23.13.1 (A:1-158) Ty 54.4 16 0.0012 29.9 7.2 71 184-258 26-106 (158)
20 d2ioja1 c.98.2.2 (A:206-325) H 50.6 10 0.00073 29.5 5.1 64 185-253 35-98 (120)
21 d1ul1x2 c.120.1.2 (X:2-217) Fl 50.6 19 0.0014 30.3 7.4 42 206-254 136-177 (216)
22 d1nnla_ c.108.1.4 (A:) Phospho 48.2 4.7 0.00034 34.1 2.9 38 183-220 85-122 (217)
23 d1h05a_ c.23.13.1 (A:) Type II 45.6 40 0.0029 26.9 8.2 75 183-261 29-106 (144)
24 d1wpga2 c.108.1.7 (A:344-360,A 42.5 49 0.0035 26.6 8.6 34 186-219 26-59 (168)
25 d1nrwa_ c.108.1.10 (A:) Hypoth 42.0 70 0.0051 26.6 10.1 69 191-262 29-113 (285)
26 d1uqra_ c.23.13.1 (A:) Type II 40.6 59 0.0043 25.8 8.5 71 186-260 33-106 (146)
27 d1q77a_ c.26.2.4 (A:) Hypothet 40.4 22 0.0016 26.5 5.7 95 133-227 12-118 (138)
28 d1gqoa_ c.23.13.1 (A:) Type II 39.5 76 0.0055 25.0 9.0 71 188-262 34-107 (141)
29 d1dbqa_ c.93.1.1 (A:) Purine r 38.8 98 0.0071 25.4 10.7 72 180-256 14-89 (282)
30 d1vp8a_ c.49.1.2 (A:) Hypothet 37.2 26 0.0019 29.2 5.8 67 184-252 20-92 (190)
31 d2bdua1 c.108.1.21 (A:7-297) C 36.7 7.6 0.00056 35.0 2.5 20 208-227 141-160 (291)
32 d8abpa_ c.93.1.1 (A:) L-arabin 36.5 90 0.0065 26.2 10.0 72 180-256 15-90 (305)
33 d1jyea_ c.93.1.1 (A:) Lac-repr 34.7 71 0.0052 26.7 8.9 70 179-254 13-88 (271)
34 d2dria_ c.93.1.1 (A:) D-ribose 34.1 61 0.0044 26.6 8.2 72 180-256 15-91 (271)
35 d2nzug1 c.93.1.1 (G:58-332) Gl 33.7 1E+02 0.0076 25.2 9.8 69 180-254 17-89 (275)
36 d1o2da_ e.22.1.2 (A:) Alcohol 28.4 15 0.0011 33.5 3.2 78 174-252 6-91 (359)
37 d1gtza_ c.23.13.1 (A:) Type II 26.5 78 0.0057 25.2 6.9 70 188-261 39-112 (149)
38 d1t57a_ c.49.1.2 (A:) Hypothet 25.3 25 0.0018 29.3 3.6 68 184-251 19-89 (186)
39 d1rxwa2 c.120.1.2 (A:3-219) Fl 24.9 35 0.0025 28.7 4.7 41 207-254 129-169 (217)
40 d1jbea_ c.23.1.1 (A:) CheY pro 24.7 88 0.0064 23.3 6.8 62 183-247 66-127 (128)
41 d1vlja_ e.22.1.2 (A:) NADH-dep 24.3 19 0.0014 33.3 3.0 77 174-251 11-96 (398)
42 d1im5a_ c.33.1.3 (A:) Pyrazina 24.2 64 0.0047 25.4 6.2 67 186-252 108-178 (179)
43 d2fvya1 c.93.1.1 (A:2-306) Gal 23.8 1.3E+02 0.0098 24.7 8.7 73 179-256 14-92 (305)
44 d1w3ex1 d.79.3.1 (X:1-98) Euka 23.6 90 0.0066 22.6 6.4 43 208-253 21-63 (98)
45 d1pq4a_ c.92.2.2 (A:) Periplas 23.6 1E+02 0.0073 26.6 7.9 41 185-225 226-267 (289)
46 d1yx1a1 c.1.15.7 (A:3-252) Hyp 23.4 99 0.0072 25.6 7.6 66 185-251 49-125 (250)
47 d1ii7a_ d.159.1.4 (A:) Mre11 { 23.4 1E+02 0.0073 25.9 7.8 32 175-206 19-50 (333)
48 d1ccwa_ c.23.6.1 (A:) Glutamat 23.1 1.4E+02 0.0099 22.9 7.8 61 186-247 21-82 (137)
49 d1a77a2 c.120.1.2 (A:2-208) Fl 22.2 43 0.0032 27.8 4.8 42 184-225 130-171 (207)
50 d1swva_ c.108.1.3 (A:) Phospho 22.1 15 0.0011 31.0 1.5 28 188-215 107-134 (257)
51 d1guda_ c.93.1.1 (A:) D-allose 21.9 1.4E+02 0.01 24.4 8.5 73 180-257 15-94 (288)
52 d1t0kb_ d.79.3.1 (B:) Eukaryot 21.8 93 0.0068 22.4 6.1 43 208-253 20-62 (97)
53 d1m5wa_ c.1.24.1 (A:) Pyridoxi 20.6 1.9E+02 0.014 24.5 8.9 90 154-252 90-190 (242)
54 d7reqa2 c.23.6.1 (A:561-728) M 20.6 1.9E+02 0.014 22.9 8.8 59 189-248 58-117 (168)
No 1
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=100.00 E-value=2.4e-39 Score=301.00 Aligned_cols=167 Identities=25% Similarity=0.471 Sum_probs=155.7
Q ss_pred eEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEEC
Q 013801 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204 (436)
Q Consensus 125 ~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G 204 (436)
++|||||||||++||+||.+|++.+.+|+||||+||.++.. ...|++|++|+++||.+|+++|+++|+.|+|++|
T Consensus 2 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~v~~vyi~dp~~~~~-----~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~i~~G 76 (202)
T d1owla2 2 PILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQS-----ADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQG 76 (202)
T ss_dssp CEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTC-----TTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEES
T ss_pred CEEEEECCCCccchHHHHHHHHhcCCcEEEEEEEcchHhcc-----hhhhHHHHHHHHHHHHHHHHhhhccccceEEEEe
Confidence 68999999999999999999999889999999999987753 2578999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHHHHHhh
Q 013801 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG 284 (436)
Q Consensus 205 ~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~r~~~~ 284 (436)
++.++|.++++++++++||++.+|+++++++|+.|++.|++.||.++.|++++|++|++++++.|++|++||+|||+|++
T Consensus 77 ~~~~~l~~l~~~~~i~~v~~~~~~~~~~~~rd~~i~~~~~~~~i~~~~~~~~~L~~p~~v~~~~g~~~~vFTpF~k~~~~ 156 (202)
T d1owla2 77 DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQA 156 (202)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHH
T ss_pred eeeccchhhccccccceeEEeeeccchhhhHHHHHhhhhhhccccccccccccccCcccccCCCCCchhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccchhccc
Q 013801 285 VEIRKTIEALDQ 296 (436)
Q Consensus 285 l~~~~~~~~p~~ 296 (436)
.+.+.++..|..
T Consensus 157 ~~~~~p~~~p~~ 168 (202)
T d1owla2 157 QPKPTPVATPTE 168 (202)
T ss_dssp SCCCCCCCCCCS
T ss_pred cCCCCCCCCccc
Confidence 766555554433
No 2
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=100.00 E-value=5.4e-39 Score=298.65 Aligned_cols=174 Identities=41% Similarity=0.787 Sum_probs=160.8
Q ss_pred CCeEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 013801 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVR 202 (436)
Q Consensus 123 ~~~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~ 202 (436)
.+.+|||||||||++||+||.+|++.+.+|+||||+||+.+..+..|+...|.+|.+|+++||.+|+++|+++|++|+|+
T Consensus 5 p~~~lvWfr~DLRl~DN~aL~~A~~~~~~vi~vyi~dp~~~~~~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~ 84 (204)
T d1np7a2 5 PPTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVT 84 (204)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEeCCCCccccHHHHHHHHhcCCcEEEEEEECchHhcCcccccccccHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 46789999999999999999999999899999999999998877777778899999999999999999999999999999
Q ss_pred ECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHHHHH
Q 013801 203 VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV 282 (436)
Q Consensus 203 ~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~r~~ 282 (436)
.|++.++|.+++++++|++||++++|+++++++|++|++.|++.||.++.+++++|+++++++++.|++|++||+|||+|
T Consensus 85 ~G~~~~~l~~l~~~~~i~~V~~n~~~~~~e~~rd~~v~~~l~~~~i~~~~~~~~~L~~p~~l~~~~~~~~~vFTpFrk~~ 164 (204)
T d1np7a2 85 TGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDI 164 (204)
T ss_dssp ESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhhhhheeeeccccHHHHHHHHHHhhhhccceeeeEeccCccccChhhccCCCCCCCccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc--cccccchhccc
Q 013801 283 KGV--EIRKTIEALDQ 296 (436)
Q Consensus 283 ~~l--~~~~~~~~p~~ 296 (436)
++. ..+.+.+.|..
T Consensus 165 e~~~~~~~~~~~~p~~ 180 (204)
T d1np7a2 165 EKKKISIRPCFFAPSQ 180 (204)
T ss_dssp HTTTCCCCCCCCCCSC
T ss_pred HhccCCCCCCccChhh
Confidence 864 23344444433
No 3
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=7.1e-37 Score=280.48 Aligned_cols=156 Identities=24% Similarity=0.446 Sum_probs=146.5
Q ss_pred eEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-
Q 013801 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV- 203 (436)
Q Consensus 125 ~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~- 203 (436)
.+|||||||||++||+||.+|++.+ +|+||||+||.+++. ...|.+|..|+++||.+|+++|+++|+.|+++.
T Consensus 1 ~SlvWFR~DLRl~DN~aL~~A~~~~-~vi~vfi~dp~~~~~-----~~~~~~~~~fl~~sL~~L~~~L~~~g~~L~v~~~ 74 (185)
T d1u3da2 1 CSIVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGH-----YHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRS 74 (185)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHHHS-CEEEEEEECGGGGTT-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEECCCCCcccHHHHHHHHhCC-CEEEEEEEcchHhcc-----cChHHHHHHHHHHHHHHHHHHHHhcCCcceEeec
Confidence 3699999999999999999999875 899999999988764 356899999999999999999999999999985
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHHHHHh
Q 013801 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283 (436)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~r~~~ 283 (436)
|++.++|.++++++++++||++.+|++++++||++|+++|++.||.++.+++++|++|+++.++.|++|++||+|||+|.
T Consensus 75 g~~~~~l~~l~~~~~i~~v~~n~~~~~~e~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~y~vFTpF~k~~~ 154 (185)
T d1u3da2 75 TDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCL 154 (185)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHH
T ss_pred cchHHHHHHHHHhcCCceEEEeccccHHHHHHHHHHHHHHHHcCCceeecCCceecCccccccCCCCCCcccHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcc
Q 013801 284 GVE 286 (436)
Q Consensus 284 ~l~ 286 (436)
...
T Consensus 155 ~~~ 157 (185)
T d1u3da2 155 SMP 157 (185)
T ss_dssp TCS
T ss_pred hCc
Confidence 753
No 4
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=4.1e-35 Score=265.44 Aligned_cols=146 Identities=29% Similarity=0.382 Sum_probs=134.3
Q ss_pred CeEEEEEeCCCCccCcHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Q 013801 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (436)
Q Consensus 124 ~~~LvWfRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~ 203 (436)
+++|||||||||++||+||.+|++.+ +|+||||+|+..+. .+.+|.+|+++||.+|+++|+++|+.|+|++
T Consensus 1 gp~l~Wfr~DLRl~Dn~aL~~A~~~~-~vi~vfi~d~~~~~--------~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~ 71 (170)
T d2j07a2 1 GPLLVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNLK--------TTPRRRAWFLENVRALREAYRARGGALWVLE 71 (170)
T ss_dssp CCEEEEESSCCCSTTCHHHHHHHTTS-CEEEEEEECHHHHS--------SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEECCCCcccchHHHHHHHhcC-CEEEEEEEecccch--------hhHHHHHHHHHHHHHHHHhhhccccchhhhh
Confidence 47899999999999999999999875 89999999997763 4789999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHHHHHh
Q 013801 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283 (436)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~r~~~ 283 (436)
|++.++|.+|+++++|++||+|.+|++++++||++|+++|+ +++++|++++.+++..|++|++||+|||+|+
T Consensus 72 G~~~~~l~~l~~~~~i~~V~~n~~~~~~~~~rd~~v~~~l~--------~~~~~l~~p~~v~~~~~~~y~VFTpF~k~~~ 143 (170)
T d2j07a2 72 GLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALP--------VPLHLLPAPHLLPPDLPRAYRVYTPFSRLYR 143 (170)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHCS--------SCEEEECCCCSSCTTCSSCCSSHHHHHTTCC
T ss_pred hhHHHHHHHHHHHhhhhHHHhhccchhhhhHHHHHHHhhhc--------cCceeecccCeeeCCcCCCCCccCHHHHHHh
Confidence 99999999999999999999999999999999999998763 4567788999999999999999999999997
Q ss_pred hcc
Q 013801 284 GVE 286 (436)
Q Consensus 284 ~l~ 286 (436)
+..
T Consensus 144 ~~~ 146 (170)
T d2j07a2 144 GAA 146 (170)
T ss_dssp CCC
T ss_pred ccC
Confidence 643
No 5
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.4e-34 Score=266.66 Aligned_cols=154 Identities=21% Similarity=0.344 Sum_probs=142.5
Q ss_pred eEEEEEeCCCCccCcHHHHHHhhcCC-ceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Q 013801 125 ASIVWFRNDLRVHDNESLNTANNESV-SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (436)
Q Consensus 125 ~~LvWfRrDLRl~DN~AL~~A~~~~~-~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~ 203 (436)
..|||||||||++||+||.+|++.+. +|+||||+||.++... ..|.+|+.|+++||.+|+++|+++|++|+|+.
T Consensus 2 t~LvWfRrDLRl~DN~aL~~A~~~~~~~v~~vyi~dp~~~~~~-----~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~ 76 (200)
T d1dnpa2 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATH-----NMSPRQAELINAQLNGLQIALAEKGIPLLFRE 76 (200)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEeCCCCccccHHHHHHHHHhCCCcEEEEEEEcchhhccc-----CcchhhhhhHHHHHHHHHhhhhhccceeEEEE
Confidence 57999999999999999999997654 7999999999876532 56899999999999999999999999999999
Q ss_pred CC----hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCCCCCCCCCCCCCChhhHH
Q 013801 204 GK----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR 279 (436)
Q Consensus 204 G~----~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~~l~~~~g~~~~~ft~F~ 279 (436)
|+ +.++|.+++++++|++||++.+|++++++||++|++.| .||.++.+++++|++|+.+.++.|++|++||+||
T Consensus 77 g~~~~~~~~~l~~l~~~~~i~~v~~n~~~~~~~~~rd~~v~~~l--~~i~~~~~~~~~L~~p~~v~~~~g~~y~VFTpF~ 154 (200)
T d1dnpa2 77 VDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFK 154 (200)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHC--TTSEEEEECCSSSSCTTSSCCTTSCCCSSHHHHH
T ss_pred ecccccchhHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHh--hhhcccccCceeeccccccccCCCCCCccCCHHH
Confidence 97 56789999999999999999999999999999999999 4899999999999999999999999999999999
Q ss_pred HHHhhc
Q 013801 280 EKVKGV 285 (436)
Q Consensus 280 r~~~~l 285 (436)
|+|.+.
T Consensus 155 k~~~~~ 160 (200)
T d1dnpa2 155 NAWLKR 160 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998763
No 6
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=99.66 E-value=6.6e-18 Score=162.96 Aligned_cols=86 Identities=43% Similarity=0.870 Sum_probs=71.3
Q ss_pred CCCCccHHHHHHHHHHHHHH--HhcCCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCC
Q 013801 334 NSMKGGETEALQRLKKFAAE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 411 (436)
Q Consensus 334 ~~~~gGe~~A~~~L~~Fl~~--~l~~Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~ 411 (436)
..|+|||++|+++|++||.+ ++..|.+. ||.+++.++||+|||||+||+||||+|++++.+.....
T Consensus 6 ~~f~gGe~~Al~~L~~Fl~~~~~l~~Y~~~-----Rn~~~~~~~~S~LSPyL~~G~LS~rev~~~~~~~~~~~------- 73 (279)
T d1np7a1 6 LAFQGGETAGLARLQDYFWHGDRLKDYKET-----RNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQER------- 73 (279)
T ss_dssp CCCCCSHHHHHHHHHHHHTTSCCGGGHHHH-----TTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT-------
T ss_pred CCCCChHHHHHHHHHHHHhcccchhhhhHh-----cCCCCCCCCccccCHHHcCCccCHHHHHHHHHHHhhcc-------
Confidence 35899999999999999953 57888763 77667888999999999999999999999998765432
Q ss_pred CCCCCCCCcchHHHHhhheeecccC
Q 013801 412 DGESGSSGAGSNWLMFELLWRDFFR 436 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~eL~WREFyr 436 (436)
..+...++|++||+|||||+
T Consensus 74 -----~~~~~~~~~~~~l~WRef~~ 93 (279)
T d1np7a1 74 -----VSNDSTHWLIFELLWRDFFR 93 (279)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHH
T ss_pred -----cccchHHHHHHHHHHHHHHH
Confidence 12456678889999999984
No 7
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=99.65 E-value=9.5e-18 Score=160.99 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=67.0
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCC
Q 013801 337 KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416 (436)
Q Consensus 337 ~gGe~~A~~~L~~Fl~~~l~~Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~ 416 (436)
|+||++|+++|++||++++.+|.+. ||. |+.++||+|||||+||+||||+|++++.+......
T Consensus 1 P~Ge~aAl~~L~~Fl~~~l~~Y~~~-----Rn~-p~~~~tSrLSPyL~~G~ISprev~~~v~~~~~~~~----------- 63 (269)
T d1dnpa1 1 PVEEKAAIAQLRQFCQNGAGEYEQQ-----RDF-PAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQAL----------- 63 (269)
T ss_dssp CCSHHHHHHHHHHHHHTHHHHHHHH-----TTC-TTSCCSCCCHHHHHHTSSCHHHHHHHHHHHCGGGG-----------
T ss_pred CCCHHHHHHHHHHHHHhHHHHHhHh-----cCC-CCCCCCccCcHHHcCCcCCHHHHHHHHHHhhhhcc-----------
Confidence 6899999999999999999999864 774 77889999999999999999999999987644311
Q ss_pred CCCcchHHHHhhheeecccC
Q 013801 417 SSGAGSNWLMFELLWRDFFR 436 (436)
Q Consensus 417 ~~~~~~~~~~~eL~WREFyr 436 (436)
......++++||+|||||+
T Consensus 64 -~~~~~~~~l~eL~wRe~~~ 82 (269)
T d1dnpa1 64 -DGGAGSVWLNELIWREFYR 82 (269)
T ss_dssp -GTSTTHHHHHHHHHHHHHH
T ss_pred -ccccchhHHhhhhhhhhhh
Confidence 1223344558999999974
No 8
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.62 E-value=3.5e-17 Score=159.44 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=68.3
Q ss_pred CCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCC
Q 013801 335 SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414 (436)
Q Consensus 335 ~~~gGe~~A~~~L~~Fl~~~l~~Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~ 414 (436)
.|.+||++|+++|++||.+++..|.+. ||. |+.++||+|||||+|||||+|+|++++.+....... .+
T Consensus 15 ~W~pGe~~A~~~L~~Fl~~~l~~Y~~~-----Rn~-p~~~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~------~~ 82 (300)
T d1u3da1 15 AWSPGWSNGDKALTTFINGPLLEYSKN-----RRK-ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWAN------EG 82 (300)
T ss_dssp HCCCSHHHHHHHHHHHHTTGGGGTTTT-----TTC-SSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHH------HT
T ss_pred cCCccHHHHHHHHHHHHHhhHHHHhhh-----cCC-CCccCCccccHHHcCCCCCHHHHHHHHHHHHHhhhh------hc
Confidence 489999999999999999999999874 674 677889999999999999999999999754321100 00
Q ss_pred CCCCCcchHHHHhhheeecccC
Q 013801 415 SGSSGAGSNWLMFELLWRDFFR 436 (436)
Q Consensus 415 ~~~~~~~~~~~~~eL~WREFyr 436 (436)
.........+|++||+|||||+
T Consensus 83 ~~~~~~~~~~fi~eL~wRef~~ 104 (300)
T d1u3da1 83 NEAGEESVNLFLKSIGLREYSR 104 (300)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHH
Confidence 0001223456779999999974
No 9
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=99.59 E-value=8e-17 Score=154.47 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=67.9
Q ss_pred CCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCC
Q 013801 336 MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 415 (436)
Q Consensus 336 ~~gGe~~A~~~L~~Fl~~~l~~Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~ 415 (436)
+.+||++|+++|++||++++.+|.+. || .|+.++||+|||||+||+||+|+|++++.+........
T Consensus 2 ~~pGE~~Al~~L~~Fl~~~l~~Y~~~-----Rn-~p~~~~tS~LSPyL~fG~IS~R~v~~~~~~~~~~~~~~-------- 67 (271)
T d1owla1 2 VEPGETAAIARLQEFCDRAIADYDPQ-----RN-FPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSD-------- 67 (271)
T ss_dssp SCSSHHHHHHHHHHHHHTGGGGHHHH-----TT-CTTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCH--------
T ss_pred CCccHHHHHHHHHHHHHHHHHhhccc-----cC-CCCCCCCccCCHHHccCccCHHHHHHHHHHhhhhcccc--------
Confidence 46899999999999999999999764 66 47788999999999999999999999998764421100
Q ss_pred CCCCcchHHHHhhheeecccC
Q 013801 416 GSSGAGSNWLMFELLWRDFFR 436 (436)
Q Consensus 416 ~~~~~~~~~~~~eL~WREFyr 436 (436)
.......+|++||+|||||+
T Consensus 68 -~~~~~~~~f~~eL~wR~~~~ 87 (271)
T d1owla1 68 -EARNSIRVWQQELAWREFYQ 87 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccchHHhhhhhHHHHHHH
Confidence 01223456679999999984
No 10
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=99.56 E-value=3.8e-16 Score=146.35 Aligned_cols=77 Identities=31% Similarity=0.535 Sum_probs=64.2
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCC
Q 013801 337 KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 416 (436)
Q Consensus 337 ~gGe~~A~~~L~~Fl~~~l~~Y~~~~~~~~Rd~~~~~~~TS~LSPyL~fG~ISpR~V~~~v~k~~~~~~~~~~~~~~~~~ 416 (436)
++||++|+++|++||.+++.+|.+. ||. +..++||+|||||+||+||||+|++++.+...
T Consensus 5 ~pGe~~Al~~L~~Fl~~~l~~Y~~~-----Rn~-p~~~~tS~LSPyL~~G~LS~r~v~~~~~~~~~-------------- 64 (234)
T d2j07a1 5 EPGEEAALAGLRAFLEAKLPRYAEE-----RDR-LDGEGGSRLSPYFALGVLSPRLAAWEAERRGG-------------- 64 (234)
T ss_dssp CCSHHHHHHHHHHHHHHTGGGHHHH-----TTC-TTCTTSCCCHHHHHTTSSCHHHHHHHHHHHCS--------------
T ss_pred CccHHHHHHHHHHHHHHHHHHHhHh-----cCC-CCCCCCcccCHHHccCCCcHHHHHHHHhhhcc--------------
Confidence 5899999999999999999999874 674 67788999999999999999999999976521
Q ss_pred CCCcchHHHHhhheeecccC
Q 013801 417 SSGAGSNWLMFELLWRDFFR 436 (436)
Q Consensus 417 ~~~~~~~~~~~eL~WREFyr 436 (436)
++...| ++||+|||||+
T Consensus 65 --~~~~~~-~~el~wr~~~~ 81 (234)
T d2j07a1 65 --EGARKW-VAELLWRDFSY 81 (234)
T ss_dssp --HHHHHH-HHHHHHHHHHH
T ss_pred --hhhHHH-HHHHHHHHHHH
Confidence 223344 58999999973
No 11
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}
Probab=90.12 E-value=0.38 Score=37.80 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=47.7
Q ss_pred HHHHHHh----hcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHH---HHHHHHHHHHHHHHhCCCeEEEEECChHHHHHH
Q 013801 140 ESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS---FLIESVSDLRKNLQARGSDLVVRVGKPETVLVE 212 (436)
Q Consensus 140 ~AL~~A~----~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~---FL~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~ 212 (436)
.++.+|. ..+..+..+.|+++..... +.......... -+.+-|..+.+...-.....++..|++.+.|.+
T Consensus 16 ~a~~~a~~~a~~~~~~l~ll~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~ 92 (135)
T d2z3va1 16 RAAEVAKAEAEAHGARLIVVHAYEPVPDYL---GEPFFEEALRRRLERAEGVLEEARALTGVPKEDALLLEGVPAEAILQ 92 (135)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEECCCCTTC---CTTHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEEEecCCcccc---ccchhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCChHHHHHH
Confidence 3455544 4567888999998632210 00000111111 222222222222222345567778999999999
Q ss_pred HHHHhCCCEEEEecc
Q 013801 213 LAKAIGADAVYAHRE 227 (436)
Q Consensus 213 L~~~~~a~~V~~~~e 227 (436)
.+++.+++-|++-..
T Consensus 93 ~a~~~~~dliV~G~~ 107 (135)
T d2z3va1 93 AARAEKADLIVMGTR 107 (135)
T ss_dssp HHHHTTCSEEEEESS
T ss_pred HhhhhheeeEEeccC
Confidence 999999999988754
No 12
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=88.26 E-value=0.66 Score=41.05 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=63.4
Q ss_pred cHHHHHHhhcCCceeeEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-----CChHHHHHHH
Q 013801 139 NESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV-----GKPETVLVEL 213 (436)
Q Consensus 139 N~AL~~A~~~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~-----G~~~~~L~~L 213 (436)
..||+.|.+++..|++++.+-+... .+..|..-.+.-++.+-+..|++|+... .+-.+.+..+
T Consensus 17 ~lAl~~a~~~G~eV~~L~t~~~~~~------------~s~~~h~~~~~ll~~qAealgiPl~~~~~~~~~e~~~~~l~~~ 84 (226)
T d2d13a1 17 NYALYWALKSGLRVRYLVSMVSENE------------ESYMYHTPNVELTSLQARALGIPIIKGFTKGEKEKEVEDLKNV 84 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECCC---------------------CCTTHHHHHHHHTCCEEEEEC--CTTSHHHHHHHH
T ss_pred HHHHHHHHHcCCeeEEEEEEecCCC------------CcCcccCCCHHHHHHHHHhcCCCceEEecCCcchHHHHHHHHH
Confidence 3578889888888888877765432 2333333333455556677899997764 3455667788
Q ss_pred HHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 214 AKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 214 ~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
+++.+++.|++-.-..-+.+. .+++.|.+.|+...
T Consensus 85 l~~~~v~~vv~Gdi~~~~~r~---r~e~~c~~~gl~~~ 119 (226)
T d2d13a1 85 LEGLKVDGIVAGALASRYQKE---RIENVARELGLKVY 119 (226)
T ss_dssp HHTBCCSEEECCCSSCHHHHH---HHHHHHHHHTCEEE
T ss_pred HHhcCccceEecceecHHHHH---HHHhhHHhcCcEEE
Confidence 899999999886655545443 45566777788875
No 13
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=87.57 E-value=1.2 Score=35.78 Aligned_cols=117 Identities=17% Similarity=0.256 Sum_probs=66.9
Q ss_pred cCcHHHHHHhh----cCCceeeEEEeCCCCcCCCC-----CC---CCCCC-----HHH---HHHHHHHHHHHHHHHHhCC
Q 013801 137 HDNESLNTANN----ESVSVLPVYCFDPRDYGKSS-----SG---FDKTG-----PYR---ASFLIESVSDLRKNLQARG 196 (436)
Q Consensus 137 ~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~-----~~---~~~~~-----~~r---~~FL~esL~~L~~~L~~~G 196 (436)
....+|.+|.. .+..+..++|.++....... .+ ..... ..+ .....+.|.++.+.+.+.|
T Consensus 15 ~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 94 (160)
T d1mjha_ 15 TAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKELEDVG 94 (160)
T ss_dssp HHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556666654 35678899998764432110 00 00000 001 1233456777788888899
Q ss_pred CeE--EEEECChHHHHHHHHHHhCCCEEEEecc-CCchHHHH-HHHHHHHHHhcCCcEEEe
Q 013801 197 SDL--VVRVGKPETVLVELAKAIGADAVYAHRE-VSHDEVKS-EEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 197 i~L--~v~~G~~~~~L~~L~~~~~a~~V~~~~e-~~p~~~~r-d~~l~~~l~~~gI~v~~~ 253 (436)
+.. .+..|++.+.|.+++++.+++-|++-.. .......+ -......+.+.++++..+
T Consensus 95 v~~~~~~~~G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~~pVlvV 155 (160)
T d1mjha_ 95 FKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVV 155 (160)
T ss_dssp CEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEE
T ss_pred CeEEEEEEeccHHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCCCCEEEE
Confidence 875 5567999999999999999999998642 21111110 112233445567777643
No 14
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=83.20 E-value=4.5 Score=32.72 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCCeE--EEEECChHHHHHHHHHHhCCCEEEEecc
Q 013801 182 IESVSDLRKNLQARGSDL--VVRVGKPETVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L--~v~~G~~~~~L~~L~~~~~a~~V~~~~e 227 (436)
.+-|..+.+.+++.|+.. .+..|++.+.|.+++++.+++.|++-..
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~ 129 (171)
T d2gm3a1 82 LHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSR 129 (171)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeCChHHHHHHHHhhcCCcEEEeccC
Confidence 345566777888778665 4567999999999999999999988764
No 15
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=77.30 E-value=2.4 Score=34.03 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHH
Q 013801 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233 (436)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~ 233 (436)
....=+.|++.|+.+.++.|+.......++++.|++.|+.. ..|..+
T Consensus 26 a~~~I~~L~~~Gi~v~ilTGD~~~~a~~ia~~lgI~~v~~~--~~p~~k 72 (135)
T d2b8ea1 26 AKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAE--VLPHQK 72 (135)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS--CCHHHH
T ss_pred HHHHHHHHHHcCCEEEEEcCcchhhhhHHHhhhhhhhhccc--cchhHH
Confidence 34455567889999999999999999999999999998864 556554
No 16
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=71.36 E-value=4.3 Score=31.52 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhCCCe---EEEEECChHHHHHHHHHHhCCCEEEEeccC-CchHHHHH-HHHHHHHHhcCCcEEEee
Q 013801 181 LIESVSDLRKNLQARGSD---LVVRVGKPETVLVELAKAIGADAVYAHREV-SHDEVKSE-EKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 181 L~esL~~L~~~L~~~Gi~---L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~-~p~~~~rd-~~l~~~l~~~gI~v~~~~ 254 (436)
..+.+..+++.+.+.|+. +.+..|++.+.|.+.+++++++-|++...- .......- ......++...+++..+.
T Consensus 67 ~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~i~~~a~~~~~dlIv~g~~~~~~~~~~l~Gs~~~~ll~~~~~pVlvV~ 145 (147)
T d1tq8a_ 67 IYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVH 145 (147)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEecChHHHHHHhhhccceeEEEecCCCCCcccccccccHHHHHHHhCCCCEEEEe
Confidence 456777788888888865 355679999999999999999999987642 22222111 111223444567776543
No 17
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}
Probab=67.47 E-value=22 Score=26.72 Aligned_cols=114 Identities=12% Similarity=-0.009 Sum_probs=67.8
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCCCCCCCCCCHHH--------HHHHHHHHHHHHHHHHhCCCeEE
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYR--------ASFLIESVSDLRKNLQARGSDLV 200 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~~~~~~~~~r--------~~FL~esL~~L~~~L~~~Gi~L~ 200 (436)
|.--..-.+|.+|+. .+..|..++|.++...... ...+.. ..-+.+-+..+...+...+...+
T Consensus 10 D~s~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (140)
T d1jmva_ 10 DLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT-----GLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKL 84 (140)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCC-----CCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEEeeecccccc-----cccccchHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 444445566776653 4678889999875432211 000100 01233344445555555566677
Q ss_pred EEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 201 VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 201 v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
+..|++.+.|.+.+++++++-|++-.. ......+-......++..++++-.
T Consensus 85 ~~~~~~~~~I~~~a~~~~~dliV~G~~-~~~~~~lgs~~~~li~~~~~pVli 135 (140)
T d1jmva_ 85 SGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLV 135 (140)
T ss_dssp EEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCHHHHHHHhhhhchhhEEEeccC-CCCCCCcccHHHHHHhccCCCEEE
Confidence 888999999999999999999988754 223333444444455556676654
No 18
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=62.68 E-value=9.2 Score=32.71 Aligned_cols=37 Identities=19% Similarity=0.072 Sum_probs=20.3
Q ss_pred HHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEE
Q 013801 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (436)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~ 224 (436)
+++-|+..|++.++-.+++...+..|++...+..|++
T Consensus 134 ~~~lL~~~gv~~i~Ap~EAdaqcA~L~~~g~vd~v~S 170 (219)
T d1b43a2 134 AKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASAS 170 (219)
T ss_dssp HHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHcCCceeeCchHHHHHHHHHHhcCCeEEEEe
Confidence 4445555565555555555555555555555555554
No 19
>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]}
Probab=54.38 E-value=16 Score=29.89 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=48.2
Q ss_pred HHHHHHHHHH----h--CCCeEEEEECChHHHHHHHHHHh---CCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 184 SVSDLRKNLQ----A--RGSDLVVRVGKPETVLVELAKAI---GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 184 sL~~L~~~L~----~--~Gi~L~v~~G~~~~~L~~L~~~~---~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
+|.++.+.|+ + .|+.+.++..+.+..+.+++.+. +++.|+.|. .|+.+.. .++++++..++++..+
T Consensus 26 TL~~i~~~~~~~a~~~~l~v~l~~~QSN~EgelId~I~~a~~~~~dgiIINPga~ThtS~----al~DAl~~~~~P~iEV 101 (158)
T d2c4va1 26 TLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAFSHTSI----AIADAIMLAGKPVIEV 101 (158)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEEEECSCHHHHHHHHHHTTSTTEEEEEEECGGGGGTCH----HHHHHHHHSSSCEEEE
T ss_pred CHHHHHHHHHHHHHHcCCceehhhHHHhHHHHHHHHHHHHhCCCcceEEecchhheeeee----ehHHHHHhcCCCEEEE
Confidence 4566665554 3 67899999988887777777653 467788876 5556555 4556666678888876
Q ss_pred eCCee
Q 013801 254 WGSTL 258 (436)
Q Consensus 254 ~~~~L 258 (436)
+=..+
T Consensus 102 HlSNi 106 (158)
T d2c4va1 102 HLTNI 106 (158)
T ss_dssp ESSCT
T ss_pred EccCc
Confidence 53333
No 20
>d2ioja1 c.98.2.2 (A:206-325) Hypothetical protein AF1212 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=50.59 E-value=10 Score=29.52 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
+.++-+.|++-...+++..|+-.+++...+...++..|+....+.|.+. +.+.+++.||++...
T Consensus 35 ~~~~~~~l~~~~~~lvvi~GDR~di~laa~~~~~i~~iIltgg~~p~~~-----i~~la~~~~ipil~t 98 (120)
T d2ioja1 35 PQSALRYLREARNAALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQL-----VLTKAEERGVPVILT 98 (120)
T ss_dssp HHHHHHHHHTCSSEEEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCHH-----HHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhhCCCcEEEEecCcHHHHHHHHhCCCceEEEEECCCCCCHH-----HHHHHHhCCCeEEEE
Confidence 4556666776666788999999998776555445788999888888754 333456679988754
No 21
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.57 E-value=19 Score=30.26 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 206 PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 206 ~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
..+.+.++++..|+..|.+. |+ .|.+++..++...+......
T Consensus 136 ~~~~~~~ll~~~gv~~i~Ap--~E-----Adaq~A~L~~~g~vd~v~S~ 177 (216)
T d1ul1x2 136 HNDECKHLLSLMGIPYLDAP--SE-----AEASCAALVKAGKVYAAATE 177 (216)
T ss_dssp CHHHHHHHHHHHTCCEEECS--SC-----HHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHHhcCeeeEecc--ch-----HHHHHHHHHhcCceEEEEcc
Confidence 44556777788887766552 22 35566655555555444333
No 22
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.20 E-value=4.7 Score=34.10 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCC
Q 013801 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD 220 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~ 220 (436)
.++.++-+.|+++|+++.+..|.....+..+++.+|+.
T Consensus 85 pg~~~~i~~lk~~G~~~~ivS~~~~~~v~~i~~~lgi~ 122 (217)
T d1nnla_ 85 PGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIP 122 (217)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhCCc
Confidence 45566677777778888777777777777777777765
No 23
>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=45.55 E-value=40 Score=26.87 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHH--hCCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCCeee
Q 013801 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA--IGADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLY 259 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~--~~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv 259 (436)
+=.+.+++..++.|+.+.++..+.+..+.+++.+ ..++.|+.|. .|+.+.. .++++++..++++..++=..++
T Consensus 29 ~i~~~~~~~a~~~g~~l~~~QSN~EgelI~~I~~~~~~~dgiIiNPga~ThtS~----al~Dal~~~~~P~iEVHlSNi~ 104 (144)
T d1h05a_ 29 ELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVH 104 (144)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHHTCCSCEEEEESSCGG
T ss_pred HHHHHHHHHHHHhCceEeehhhhHHHHHHHHHHHHhhccCcceeccccceeeee----ehHHHHHHcCCCEEEEEecCcc
Confidence 3344555566678999999987777666666654 2367787775 5566655 4566667778888887655554
Q ss_pred eC
Q 013801 260 HL 261 (436)
Q Consensus 260 ~p 261 (436)
..
T Consensus 105 ~R 106 (144)
T d1h05a_ 105 AR 106 (144)
T ss_dssp GS
T ss_pred cc
Confidence 43
No 24
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=42.45 E-value=49 Score=26.61 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCC
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA 219 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a 219 (436)
.+.=+.|++.|+.++++.|+....-..++++.|+
T Consensus 26 ~~~I~~l~~~GI~v~miTGD~~~tA~~ia~~~Gi 59 (168)
T d1wpga2 26 MGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGI 59 (168)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCcCEEEEECCCCHHHHHHHHHHcCC
Confidence 3444566788999999999999999999999887
No 25
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}
Probab=41.96 E-value=70 Score=26.58 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=48.3
Q ss_pred HHHhCCCeEEEEECChHHHHHHHHHHhCCCE----------------EEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 191 NLQARGSDLVVRVGKPETVLVELAKAIGADA----------------VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~----------------V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
.|++.|+.+.+..|.+...+..++++.+... ++.... -....-..+.+++++.++.+..+.
T Consensus 29 ~l~~~Gi~~~i~TGR~~~~~~~~~~~l~~~~~~i~~nG~~i~~~~~~~i~~~~---i~~~~~~~i~~~~~~~~~~~~~~~ 105 (285)
T d1nrwa_ 29 QAQRDGIEVVVSTGRAHFDVMSIFEPLGIKTWVISANGAVIHDPEGRLYHHET---IDKKRAYDILSWLESENYYYEVFT 105 (285)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHHGGGTCCCEEEEGGGTEEECTTCCEEEECC---CCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHHhCCCcEEEecCceeEEecCCceeeecc---CCHHHHHHHHHHHHHcCCceEEec
Confidence 4556899999999988888889998877652 111111 123334667788899999998888
Q ss_pred CCeeeeCC
Q 013801 255 GSTLYHLD 262 (436)
Q Consensus 255 ~~~Lv~p~ 262 (436)
+..++...
T Consensus 106 ~~~~~~~~ 113 (285)
T d1nrwa_ 106 GSAIYTPQ 113 (285)
T ss_dssp SSCEEECC
T ss_pred CceEEecc
Confidence 77776543
No 26
>d1uqra_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Actinobacillus pleuropneumoniae [TaxId: 715]}
Probab=40.61 E-value=59 Score=25.84 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeee
Q 013801 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYH 260 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~ 260 (436)
+.+++..++.|+.+.++..+.+..+.+++.+. +++.|+.|. .|+.+.. .++++++..++++..++=..++.
T Consensus 33 ~~~~~~~~~~g~~l~~~QSN~Egeli~~i~~a~~~~dgiIiNpga~ThtS~----al~Dal~~~~~P~iEVHlSNi~~ 106 (146)
T d1uqra_ 33 QHLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSV----AIRDALLAVSIPFIEVHLSNVHA 106 (146)
T ss_dssp HHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCH----HHHHHHHHHTCCEEEEESSCGGG
T ss_pred HHHHHHHHHcCCcchhhHHhHHHHHHHHHHHHhcCcceeEecccceeeehh----hHHHHHHHcCCCEEEEEccCccc
Confidence 44455556789999999988887777777653 578888886 3344444 55566666688888766444433
No 27
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}
Probab=40.37 E-value=22 Score=26.50 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=57.4
Q ss_pred CCCccCcHHHHHHhh----cCCceeeEEEeCCCCcCCC---CCCCCCCCHHHHHH---HHHHHHHHHHHHHhCCC--eEE
Q 013801 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKS---SSGFDKTGPYRASF---LIESVSDLRKNLQARGS--DLV 200 (436)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~---~~~~~~~~~~r~~F---L~esL~~L~~~L~~~Gi--~L~ 200 (436)
|+=-.-..||.+|.. .+..+..+.|+++...... ..+.......+... ..+.|.++.+.++..|. ...
T Consensus 12 D~S~~s~~al~~A~~~a~~~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (138)
T d1q77a_ 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLTGSTEIPGVE 91 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHHSCCCCCCEE
T ss_pred eCCHHHHHHHHHHHHhhhhccceEEEEEEccCcccccccccccccchhhhhhhhhhhhccccchhhcccccccceeEEEe
Confidence 555566677877764 3567888888764211000 00001112222233 34444555555555554 557
Q ss_pred EEECChHHHHHHHHHHhCCCEEEEecc
Q 013801 201 VRVGKPETVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 201 v~~G~~~~~L~~L~~~~~a~~V~~~~e 227 (436)
+..|++.+.|.+.+++.+++-|++-..
T Consensus 92 v~~G~~~~~I~~~a~~~~~DLIV~Gs~ 118 (138)
T d1q77a_ 92 YRIGPLSEEVKKFVEGKGYELVVWACY 118 (138)
T ss_dssp EECSCHHHHHHHHHTTSCCSEEEECSC
T ss_pred eecchhHHHHHHhhhhccCCEEEEecC
Confidence 788999999999999999999999764
No 28
>d1gqoa_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Bacillus subtilis [TaxId: 1423]}
Probab=39.53 E-value=76 Score=24.98 Aligned_cols=71 Identities=18% Similarity=0.115 Sum_probs=47.2
Q ss_pred HHHHHHhCCCeEEEEECChHHHHHHHHHH--hCCCEEEEec-cCCchHHHHHHHHHHHHHhcCCcEEEeeCCeeeeCC
Q 013801 188 LRKNLQARGSDLVVRVGKPETVLVELAKA--IGADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (436)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~--~~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~gI~v~~~~~~~Lv~p~ 262 (436)
+++..+++|+.+.++..+.+..+.+++.+ .+++.|+.|- .|+.+.. .++++++..++++..++=..++..+
T Consensus 34 ~~~~a~~~~i~l~~~QSN~EgelI~~I~~~~~~~dgiIiNPga~thtS~----al~Dal~~~~~P~iEVHlSNi~~RE 107 (141)
T d1gqoa_ 34 LFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY----AIRDAVSSISLPVVEVHLSNLYARE 107 (141)
T ss_dssp HHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSC
T ss_pred HHHHHHHcCCeeeeehhhHHHHHHHHHHHhhhccceeeecchhhhhhhh----hHHHHHHhcCCCEEEEEeCCccccc
Confidence 34444567999999987777666666643 3467888875 5555555 5566667778888887655555443
No 29
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.84 E-value=98 Score=25.40 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC--ChH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G--~~~--~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|..+-++.+++.+++.|..+.+... +.. ..+.+.+.+.+++.|+.......+.. +.......++++..++.
T Consensus 14 f~~~~~~gi~~~~~~~gy~~~~~~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-----~~~~~~~~~iPvV~~~~ 88 (282)
T d1dbqa_ 14 YFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPL-----LAMLEEYRHIPMVVMDW 88 (282)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHH-----HHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEeeecccccchh-----hhhHHhhcCCCceEEEe
Confidence 6667778888999999999988763 332 23445556679999776543332322 22222336899987764
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 89 ~ 89 (282)
T d1dbqa_ 89 G 89 (282)
T ss_dssp S
T ss_pred c
Confidence 3
No 30
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=37.16 E-value=26 Score=29.25 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCeEEEEE---CChHHHHHHHHHHhCCCEEEEeccC---CchHHHHHHHHHHHHHhcCCcEEE
Q 013801 184 SVSDLRKNLQARGSDLVVRV---GKPETVLVELAKAIGADAVYAHREV---SHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~---G~~~~~L~~L~~~~~a~~V~~~~e~---~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
+|+--.+..+++||.-+|+- |.....+.+.++ |.+-|...-.+ +|....++...++.|++.|+.+.+
T Consensus 20 ~l~~a~~rA~Elgi~~iVvAStsG~TA~~~~e~~~--g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 92 (190)
T d1vp8a_ 20 TLRLAVERAKELGIKHLVVASSYGDTAMKALEMAE--GLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 92 (190)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCT--TCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHhc--CCeEEEEecccCCCCCCcccCCHHHHHHHHHcCCEEEE
Confidence 34445566777899988886 555555555553 66666665555 455667888999999999998864
No 31
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.74 E-value=7.6 Score=35.00 Aligned_cols=20 Identities=5% Similarity=-0.072 Sum_probs=9.7
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 013801 208 TVLVELAKAIGADAVYAHRE 227 (436)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e 227 (436)
..+.+.+++.|+..+++...
T Consensus 141 ~e~~~~l~~~~i~~~IvSgG 160 (291)
T d2bdua1 141 ENFFGKLQQHGIPVFIFSAG 160 (291)
T ss_dssp HHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEcCC
Confidence 33444555555555555443
No 32
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=36.54 E-value=90 Score=26.19 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC-ChHH---HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEeeC
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVG-KPET---VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G-~~~~---~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~~ 255 (436)
|+.+-++..++..++.|..+++... +..+ .+..++ ..+++.|+...- .....+. +.+.+.+.||++..++.
T Consensus 15 ~~~~~~~g~~~aa~~~G~~~i~~~~~d~~~q~~~i~~li-~~~vDgiIi~~~---~~~~~~~-~~~~a~~~giPVV~~d~ 89 (305)
T d8abpa_ 15 WFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLA-ASGAKGFVICTP---DPKLGSA-IVAKARGYDMKVIAVDD 89 (305)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHH-HTTCCEEEEECS---CGGGHHH-HHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHH-HcCCCEEEEccc---cccccHH-HHHHHHhcCCCEEEEcC
Confidence 7777888888899999999977653 3332 333333 458999887642 1112233 34566778999998764
Q ss_pred C
Q 013801 256 S 256 (436)
Q Consensus 256 ~ 256 (436)
.
T Consensus 90 ~ 90 (305)
T d8abpa_ 90 Q 90 (305)
T ss_dssp C
T ss_pred c
Confidence 3
No 33
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=34.72 E-value=71 Score=26.71 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEE-C-ChH----HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 179 SFLIESVSDLRKNLQARGSDLVVRV-G-KPE----TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 179 ~FL~esL~~L~~~L~~~Gi~L~v~~-G-~~~----~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
.|..+-+..+++.++++|..+++.. + +.. +.+..|+. .+++.|++....... + .+...+.+.+|++..
T Consensus 13 ~~~~~i~~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~-~~vdgiIl~~~~~~~----~-~~~~~~~~~~iPvV~ 86 (271)
T d1jyea_ 13 HAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLA-QRVSGLIINYPLDDQ----D-AIAVEAACTNVPALF 86 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHT-TTCSCEEEESCCCHH----H-HHHHHHHTTTSCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHh-cCCCEEEeccccCch----h-HHHHHHHhcCCCeee
Confidence 4667788899999999999998864 2 222 33444444 489988876433321 2 333456778999987
Q ss_pred ee
Q 013801 253 FW 254 (436)
Q Consensus 253 ~~ 254 (436)
++
T Consensus 87 ~d 88 (271)
T d1jyea_ 87 LD 88 (271)
T ss_dssp SS
T ss_pred ee
Confidence 75
No 34
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=34.13 E-value=61 Score=26.60 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC--hH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK--PE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~--~~---~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|+.+-++.+++.+++.|..+.+...+ +. +.+..++ ..++..|++..-- ... ... ..+.+++.||++..++
T Consensus 15 f~~~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~i~~~~-~~~~d~ii~~~~~-~~~--~~~-~~~~~~~~~ipvV~~~ 89 (271)
T d2dria_ 15 FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLT-VRGTKILLINPTD-SDA--VGN-AVKMANQANIPVITLD 89 (271)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHT-TTTEEEEEECCSS-TTT--THH-HHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-hcCCccccccccc-ccc--hHH-HHHHHhhcceeEEEec
Confidence 77777888999999999999887643 32 2333333 2467777765321 111 122 2345667899998876
Q ss_pred CC
Q 013801 255 GS 256 (436)
Q Consensus 255 ~~ 256 (436)
..
T Consensus 90 ~~ 91 (271)
T d2dria_ 90 RQ 91 (271)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 35
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=33.74 E-value=1e+02 Score=25.19 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC--hHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK--PET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~--~~~--~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
|..+-+..+++.+++.|..+.+...+ ... ...+.+...+++.|++........ ....+.+.++++..++
T Consensus 17 f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~e~~~i~~~~~~~vdgii~~~~~~~~~------~~~~l~~~~~pvv~~~ 89 (275)
T d2nzug1 17 FYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEE------HVEELKKSPVPVVLAA 89 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEECCSCCCHH------HHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHhcCCceeeccccchhhH------HHHHHhhccccccccc
Confidence 66677888899999999999887633 322 222333456899998876443222 2244567899988765
No 36
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
Probab=28.40 E-value=15 Score=33.52 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCeEEEEECC-------hHHHHHHHHHHhCCCEEEEec-cCCchHHHHHHHHHHHHHh
Q 013801 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGK-------PETVLVELAKAIGADAVYAHR-EVSHDEVKSEEKIEAAMKD 245 (436)
Q Consensus 174 ~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G~-------~~~~L~~L~~~~~a~~V~~~~-e~~p~~~~rd~~l~~~l~~ 245 (436)
.|.|+.|=..++.+|.+.+++.|.+.+++.|+ ..+.+.+.+++.++..++++. +-+|..... +++.+.+++
T Consensus 6 ~P~~i~fG~g~l~~l~~~~~~~g~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v-~~~~~~~~~ 84 (359)
T d1o2da_ 6 MPTDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNV-MKAVERYRN 84 (359)
T ss_dssp CCCEEEESTTHHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHH-HHHHHHHTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHcCCeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCCCCHHHH-HHhhhhccc
Confidence 34455565678889999999999888777643 236677777888887665543 334443333 345566777
Q ss_pred cCCcEEE
Q 013801 246 EGIEVKY 252 (436)
Q Consensus 246 ~gI~v~~ 252 (436)
.++.+..
T Consensus 85 ~~~D~II 91 (359)
T d1o2da_ 85 DSFDFVV 91 (359)
T ss_dssp SCCSEEE
T ss_pred cCCceEE
Confidence 7877643
No 37
>d1gtza_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Streptomyces coelicolor [TaxId: 1902]}
Probab=26.55 E-value=78 Score=25.23 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=45.1
Q ss_pred HHHHHHhCCCeEEEEECChHHHHHHHHHH--hCCCEEEEec-cCCchHHHHHHHHHHHHHhc-CCcEEEeeCCeeeeC
Q 013801 188 LRKNLQARGSDLVVRVGKPETVLVELAKA--IGADAVYAHR-EVSHDEVKSEEKIEAAMKDE-GIEVKYFWGSTLYHL 261 (436)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~--~~a~~V~~~~-e~~p~~~~rd~~l~~~l~~~-gI~v~~~~~~~Lv~p 261 (436)
+++..++.|+.+.++..+.+..+.+++.+ .+++.|+.|. .|+.... .++++++.- ++++..++=..++..
T Consensus 39 ~~~~a~~~~~~v~~~QSN~EgelId~I~~~~~~~~giIINpga~ThtSi----al~DAl~~~~~~P~IEVHlSNi~~R 112 (149)
T d1gtza_ 39 CVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSV----AILDALNTCDGLPVVEVHISNIHQR 112 (149)
T ss_dssp HHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCH----HHHHHHHTSTTCCEEEEESSCGGGS
T ss_pred HHHHHHHcCCeEEeehhhhHHHHHHHHHHHhhccceeEeccHHHHHhhH----HHHHHHHHhcCCCEEEEEecCcccc
Confidence 34445677999999987777666666654 2577888875 3344444 556666554 788887764444443
No 38
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.34 E-value=25 Score=29.27 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccC---CchHHHHHHHHHHHHHhcCCcEE
Q 013801 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREV---SHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~---~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
+|+--.+..+++||.-+|+-....+.-..+++..+-+-|...-.+ +|+...++..+++.|++.|+.+.
T Consensus 19 ~l~~a~~ra~elgi~~iVvAStsG~TA~~~~e~~~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V~ 89 (186)
T d1t57a_ 19 VLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVY 89 (186)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHhcCCCEEEEecccCCCCCCCCccCHHHHHHHHHcCCEEE
Confidence 344455667778998888763333322333333333444444444 45567778899999999999886
No 39
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.87 E-value=35 Score=28.67 Aligned_cols=41 Identities=15% Similarity=-0.014 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEee
Q 013801 207 ETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (436)
Q Consensus 207 ~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~~ 254 (436)
.+.+.++++..|+..|.+. |+ .|.+++..++...|.....+
T Consensus 129 ~~~~~~lL~~~gi~~i~Ap--~E-----AeaqcA~L~~~g~vd~v~se 169 (217)
T d1rxwa2 129 VDSAKTLLSYMGIPFVDAP--SE-----GEAQAAYMAAKGDVEYTGSQ 169 (217)
T ss_dssp HHHHHHHHHHTTCCEEECS--SC-----HHHHHHHHHHTTSSSEEECS
T ss_pred HHHHHHHHHHcCceEEecC--ch-----HHHHHHHHHhCCCeEEEEec
Confidence 3445566666777666542 22 24455555554445444333
No 40
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=24.70 E-value=88 Score=23.26 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcC
Q 013801 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG 247 (436)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~g 247 (436)
+-++.+++.-...+++++++.+........-+.+.|+... ....+.+.+. .+.|.+.+++.|
T Consensus 66 el~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G~~~~-l~KP~~~~~L--~~~l~~~l~r~~ 127 (128)
T d1jbea_ 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGY-VVKPFTAATL--EEKLNKIFEKLG 127 (128)
T ss_dssp HHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEE-EESSCCHHHH--HHHHHHHHHHHT
T ss_pred HHHHHHHhCccCCCCcEEEEECcCCHHHHHHHHHCCCCEE-EECCCCHHHH--HHHHHHHHHHcC
Confidence 3334444443445677777665433333333445677663 3344444433 445555555444
No 41
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}
Probab=24.33 E-value=19 Score=33.33 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCC-eEEEEECC-------hHHHHHHHHHHhCCCEEEEec-cCCchHHHHHHHHHHHHH
Q 013801 174 GPYRASFLIESVSDLRKNLQARGS-DLVVRVGK-------PETVLVELAKAIGADAVYAHR-EVSHDEVKSEEKIEAAMK 244 (436)
Q Consensus 174 ~~~r~~FL~esL~~L~~~L~~~Gi-~L~v~~G~-------~~~~L~~L~~~~~a~~V~~~~-e~~p~~~~rd~~l~~~l~ 244 (436)
.+.|+.|=..++.+|.+.|++.|. +.+|+.|. ..+.+.+.+++.+++.++++. +-+|..... .++.+.++
T Consensus 11 ~p~~i~~G~g~~~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v-~~~~~~~~ 89 (398)
T d1vlja_ 11 NPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKV-HEAVEVAK 89 (398)
T ss_dssp CCCEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHH-HHHHHHHH
T ss_pred CCCeEEEccCHHHHHHHHHHhcCCCeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCCCCHHHH-HHHhhhcc
Confidence 344555555677888999999985 45555543 235566777788888777654 223433333 34556677
Q ss_pred hcCCcEE
Q 013801 245 DEGIEVK 251 (436)
Q Consensus 245 ~~gI~v~ 251 (436)
+.++.+.
T Consensus 90 ~~~~D~I 96 (398)
T d1vlja_ 90 KEKVEAV 96 (398)
T ss_dssp HTTCSEE
T ss_pred cccCceE
Confidence 7777654
No 42
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.19 E-value=64 Score=25.43 Aligned_cols=67 Identities=24% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCeEEEEECC----hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 186 SDLRKNLQARGSDLVVRVGK----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~----~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
.+|...|+++|+.=+++.|- .+.....=+.+.|...++..+-..-......+...+.++..|+++..
T Consensus 108 t~L~~~Lr~~gi~~liv~G~~t~~CV~~T~~~a~~~g~~V~vv~Da~~s~~~~~h~~al~~l~~~g~~vv~ 178 (179)
T d1im5a_ 108 TDLAKILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVKGIKPEDEERALEEMKSRGIKIVQ 178 (179)
T ss_dssp SSHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTTCEEEC
T ss_pred hHHHHHHHHCCCCEEEEEEeccchhHHHHHHHHHHcCCEEEEeccccCCCCHHHHHHHHHHHHHCCCEEee
Confidence 47788999999998887762 22222222334577766655533222222223333456778888763
No 43
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=23.77 E-value=1.3e+02 Score=24.66 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEEC--Ch---HHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 179 SFLIESVSDLRKNLQAR-GSDLVVRVG--KP---ETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 179 ~FL~esL~~L~~~L~~~-Gi~L~v~~G--~~---~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
.|+.+-.+.+++.+++. |+.|.+..+ +. .+.|..++. .+++.|++..--. . .....+ ..+.+.|+++..
T Consensus 14 ~f~~~i~~gi~~~a~~~~~~~l~~~~~~~~~~~q~~~i~~li~-~~vDgiii~~~~~-~--~~~~~~-~~~~~~~ipvv~ 88 (305)
T d2fvya1 14 NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA-KGVKALAINLVDP-A--AAGTVI-EKARGQNVPVVF 88 (305)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSG-G--GHHHHH-HHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEeecccc-c--ccHHHH-HHHHhcCCceee
Confidence 36667777778888877 788888764 33 344555555 5899998864221 1 122233 444668999988
Q ss_pred eeCC
Q 013801 253 FWGS 256 (436)
Q Consensus 253 ~~~~ 256 (436)
++..
T Consensus 89 ~~~~ 92 (305)
T d2fvya1 89 FNKE 92 (305)
T ss_dssp ESSC
T ss_pred eeec
Confidence 7643
No 44
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=23.62 E-value=90 Score=22.59 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
+...+-++.-.+..|+...+..+. .-+.+...|+..+|++..|
T Consensus 21 ~~v~kal~~gkaklVilA~D~~~~---~~~~i~~~c~~~~Ip~~~~ 63 (98)
T d1w3ex1 21 RKSIQYAKMGGAKLIIVARNARPD---IKEDIEYYARLSGIAVYEF 63 (98)
T ss_dssp HHHHHHHHHTCCSEEEEETTSCHH---HHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHcCCccEEEEECCCCHH---HHHHHHHHHHhcCCCeEEE
Confidence 344455666788999888887532 3457788888889998754
No 45
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=23.60 E-value=1e+02 Score=26.60 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCeEEEEE-CChHHHHHHHHHHhCCCEEEEe
Q 013801 185 VSDLRKNLQARGSDLVVRV-GKPETVLVELAKAIGADAVYAH 225 (436)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~-G~~~~~L~~L~~~~~a~~V~~~ 225 (436)
|..+.+.+++.++..++.+ ......+..++++.|+..+..+
T Consensus 226 l~~l~~~ik~~~i~~if~e~q~~~~~~~~la~~~gv~v~~ld 267 (289)
T d1pq4a_ 226 LKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLD 267 (289)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCCEEEEC
Confidence 4555556666666665554 2234455555666666655554
No 46
>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.40 E-value=99 Score=25.64 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCeEEEEE--------C---ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEE
Q 013801 185 VSDLRKNLQARGSDLVVRV--------G---KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (436)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~--------G---~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~ 251 (436)
+..+++.+++.|+.+.... + +......+++++.|+..|.+.....+.. ..-+.+.+.+++.||.+-
T Consensus 49 ~~~l~~~~~~~GL~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v~~~~g~~~~~-~~l~~l~~~a~~~Gv~l~ 125 (250)
T d1yx1a1 49 TEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLPEQ-PDLAALGRRLARHGLQLL 125 (250)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEEECCCSS-CCHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHcCCEEEEecccccccCchhhHHHHHHHHHHHHHhCCCEEEEeecccchh-HHHHHHHHHHHHcCCEEE
Confidence 3678889999999986532 1 2345566888999999998776554332 224567778888999875
No 47
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=23.35 E-value=1e+02 Score=25.90 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEECCh
Q 013801 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKP 206 (436)
Q Consensus 175 ~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G~~ 206 (436)
+.|..=..+++..+-+..++.+++++++.||-
T Consensus 19 ~~~~~~~~~~l~~iv~~a~~~~~D~vli~GDl 50 (333)
T d1ii7a_ 19 PQREEEFAEAFKNALEIAVQENVDFILIAGDL 50 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEEESCS
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 45555566788888888888999999999873
No 48
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=23.06 E-value=1.4e+02 Score=22.89 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCeEEEEE-CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcC
Q 013801 186 SDLRKNLQARGSDLVVRV-GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG 247 (436)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~-G~~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~g 247 (436)
.-+...|+..|.+++.+- .-+.+.+.+.+++++++.|....-..... ..-+++.+.|++.+
T Consensus 21 ~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~~-~~~~~~~~~l~~~~ 82 (137)
T d1ccwa_ 21 KILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGE-IDCKGLRQKCDEAG 82 (137)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHH-HHHTTHHHHHHHTT
T ss_pred HHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccccch-HHHHHHHHHHHHhc
Confidence 345567888999998875 34778889999999999998877665443 33445556666654
No 49
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.24 E-value=43 Score=27.81 Aligned_cols=42 Identities=21% Similarity=0.068 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEe
Q 013801 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (436)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~ 225 (436)
-+.++++-|+..|++.++-.|++...+..|++.--+..|+++
T Consensus 130 ~~~~~~~ll~~~gi~yi~Ap~EAeaqcA~L~~~g~vd~v~se 171 (207)
T d1a77a2 130 MVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQ 171 (207)
T ss_dssp HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHHHcCCceEecCccHHHHHHHHHHcCCeEEEEec
Confidence 355667777888888888888888888888887777777764
No 50
>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}
Probab=22.08 E-value=15 Score=30.99 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=11.7
Q ss_pred HHHHHHhCCCeEEEEECChHHHHHHHHH
Q 013801 188 LRKNLQARGSDLVVRVGKPETVLVELAK 215 (436)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~ 215 (436)
+=+.|+++|+++.+..+.+...+..+++
T Consensus 107 ~L~~Lk~~g~~i~i~Tn~~~~~~~~~l~ 134 (257)
T d1swva_ 107 VIASLRERGIKIGSTTGYTREMMDIVAK 134 (257)
T ss_dssp HHHHHHHTTCEEEEBCSSCHHHHHHHHH
T ss_pred HHHHHHhcccceeecCCCchhhHHHHHH
Confidence 3334444444444444444333333333
No 51
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=21.90 E-value=1.4e+02 Score=24.44 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC----hHH---HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEE
Q 013801 180 FLIESVSDLRKNLQARGSDLVVRVGK----PET---VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 180 FL~esL~~L~~~L~~~Gi~L~v~~G~----~~~---~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~ 252 (436)
|+.+-.+.+++.++++|..+.+..++ ... .+..++ ..+++.|++...-.... ...++ .+.+.||++..
T Consensus 15 ff~~i~~g~~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~~i-~~~~DgIi~~~~~~~~~---~~~l~-~~~~~gipvv~ 89 (288)
T d1guda_ 15 FWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLS-NKNYKGIAFAPLSSVNL---VMPVA-RAWKKGIYLVN 89 (288)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHH-TSSEEEEEECCSSSSTT---HHHHH-HHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHH-hcCCCEEEEecCCcchh---hHHHH-HHHhCCCeEEE
Confidence 66677788888999999999987633 322 233333 45888888864322111 22333 44568999988
Q ss_pred eeCCe
Q 013801 253 FWGST 257 (436)
Q Consensus 253 ~~~~~ 257 (436)
+++..
T Consensus 90 ~d~~~ 94 (288)
T d1guda_ 90 LDEKI 94 (288)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 77543
No 52
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.84 E-value=93 Score=22.36 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCCcEEEe
Q 013801 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (436)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI~v~~~ 253 (436)
+...+-+++-.+.-|+...+.++.. -+.+...|++.+|++..|
T Consensus 20 ~~v~k~i~~gkaklVilA~D~~~~~---~~~i~~~~~~~~vp~~~~ 62 (97)
T d1t0kb_ 20 KSTVKSLRQGKSKLIIIAANTPVLR---KSELEYYAMLSKTKVYYF 62 (97)
T ss_dssp HHHHHHHHHTCCSEEEECTTCCHHH---HHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHH---HHHHHHHHHhcCCceEEE
Confidence 4455566667889999998876543 356778888889987653
No 53
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}
Probab=20.64 E-value=1.9e+02 Score=24.55 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=51.1
Q ss_pred eEEEeCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHHHhCCCEEEEeccCCchH-
Q 013801 154 PVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE- 232 (436)
Q Consensus 154 ~vyi~dp~~~~~~~~~~~~~~~~r~~FL~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e~~p~~- 232 (436)
+..|=|.+.--.+..|++-. ....+| +..-+.|++.||++-++.....+. .+.+++.|++.|-.+.. +|.
T Consensus 90 vtLVPe~r~elTTegGld~~--~~~~~L----~~~i~~l~~~girvSLFiDpd~~~-i~~a~~lGad~IElhTG--~Ya~ 160 (242)
T d1m5wa_ 90 CCLVPEKRQEVTTEGGLDVA--GQRDKM----RDACKRLADAGIQVSLFIDADEEQ-IKAAAEVGAPFIEIHTG--CYAD 160 (242)
T ss_dssp EEECCCCSSCSSCCSCCCSG--GGHHHH----HHHHHHHHHTTCEEEEEECSCHHH-HHHHHHTTCSEEEEECH--HHHH
T ss_pred EEEeecCccccCcCCceeeh--hhHHHH----HHHHHHHHhcCCeEEEEeccchhh-HHHHhhcCcceeeeecc--cccc
Confidence 34443444333445665432 233444 555556677899998777544443 36788999999977653 222
Q ss_pred ----------HHHHHHHHHHHHhcCCcEEE
Q 013801 233 ----------VKSEEKIEAAMKDEGIEVKY 252 (436)
Q Consensus 233 ----------~~rd~~l~~~l~~~gI~v~~ 252 (436)
..+-+...+...+.|+.|..
T Consensus 161 a~~~~~~~~el~~i~~aa~~A~~lGL~VnA 190 (242)
T d1m5wa_ 161 AKTDAEQAQELARIAKAATFAASLGLKVNA 190 (242)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCcccC
Confidence 12222333345567888875
No 54
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=20.64 E-value=1.9e+02 Score=22.91 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=40.6
Q ss_pred HHHHHhCCCeEEEEECC-hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHHHhcCC
Q 013801 189 RKNLQARGSDLVVRVGK-PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (436)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~-~~~~L~~L~~~~~a~~V~~~~e~~p~~~~rd~~l~~~l~~~gI 248 (436)
...|+..|.+++..-.+ +.+.+.+.+.+.+++.|....-.+.+ ...-..+.+.|++.|.
T Consensus 58 a~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~~-~~~~~~l~~~L~~~g~ 117 (168)
T d7reqa2 58 ATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGH-LTLVPALRKELDKLGR 117 (168)
T ss_dssp HHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSCH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCcccc-hHHHHHHHHHHHhcCC
Confidence 45778889988766443 56677778888899998777644433 3344567778887764
Done!