BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013802
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11
Monoclonal Fab Fragment
pdb|3GIA|A Chain A, Crystal Structure Of Apct Transporter
Length = 444
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 69 IGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGG-AY 127
+ VG +GA IF + G A+ AG + +F+L+G ++L A Y +L ++ + G A+
Sbjct: 16 MAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAF 75
Query: 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIP-SWIG-- 184
++ N +T L L + Y I A A+ A Y + ++ P NI + IG
Sbjct: 76 IHKAIGDNIITGALSI-LLWMSYVISIALFAKGFAGYFLPLINA-PINTFNIAITEIGIV 133
Query: 185 --HGGEEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGA 242
F G VG + + FAG
Sbjct: 134 AFFTALNFFGSK--------------------AVGRAEFF---IVLVKLLILGLFIFAGL 170
Query: 243 FEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL 301
+ S P AP+ ++ + + F +Y+GF + N++E + P++++P I S+L
Sbjct: 171 ITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISIL 230
Query: 302 ICAALYVGVSLVLTGMVPYKFLDEDAPLSD 331
I +YVGV++ G +P +DE S+
Sbjct: 231 IVMFVYVGVAISAIGNLP---IDELIKASE 257
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11
Monoclonal Fab Fragment
Length = 444
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 69 IGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGG-AY 127
+ VG +GA IF + G A+ AG + +F+L+G ++L A Y +L ++ + G A+
Sbjct: 16 MAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAF 75
Query: 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIP-SWIG-- 184
++ N +T L L + Y I A A+ A Y + ++ P NI + IG
Sbjct: 76 IHKAIGDNIITGALSI-LLWMSYVISIALFAKGFAGYFLPLINA-PINTFNIAITEIGIV 133
Query: 185 --HGGEEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGA 242
F G VG + + FAG
Sbjct: 134 AFFTALNFFGSK--------------------AVGRAEFF---IVLVALLILGLFIFAGL 170
Query: 243 FEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL 301
+ S P AP+ ++ + + F +Y+GF + N++E + P++++P I S+L
Sbjct: 171 ITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISIL 230
Query: 302 ICAALYVGVSLVLTGMVPYKFLDEDAPLSD 331
I +YVGV++ G +P +DE S+
Sbjct: 231 IVMFVYVGVAISAIGNLP---IDELIKASE 257
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|B Chain B, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|C Chain C, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|D Chain D, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
Length = 445
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 2/162 (1%)
Query: 244 EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLIC 303
E ++ W+ N F I + V ++++G ++ + +A K P+R++PI +G +LI
Sbjct: 176 ETYMAAWNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235
Query: 304 AALYVGVSLVLTGMVPYKFLDEDA-PLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXY 362
A YV + + GM+P L A P DA ++SF
Sbjct: 236 AVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTL 295
Query: 363 VQSXXXXXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGI 404
+ P IFA+V+ K TPV + VG++ I
Sbjct: 296 LAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTI 336
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic
pdb|3LRB|B Chain B, Structure Of E. Coli Adic
pdb|3LRC|A Chain A, Structure Of E. Coli Adic (P1)
pdb|3LRC|B Chain B, Structure Of E. Coli Adic (P1)
pdb|3LRC|C Chain C, Structure Of E. Coli Adic (P1)
pdb|3LRC|D Chain D, Structure Of E. Coli Adic (P1)
Length = 445
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 2/162 (1%)
Query: 244 EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLIC 303
E ++ W+ F I + V ++++G ++ + +A K P+R++PI +G +LI
Sbjct: 176 ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235
Query: 304 AALYVGVSLVLTGMVPYKFLDEDA-PLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXY 362
A YV + + GM+P L A P DA ++SF
Sbjct: 236 AVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTL 295
Query: 363 VQSXXXXXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGI 404
+ P IFA+V+ K TPV + VGI+ I
Sbjct: 296 LAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTI 336
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
pdb|3OB6|B Chain B, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
Length = 445
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 2/162 (1%)
Query: 244 EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLIC 303
E ++ W+ F I + V ++++G ++ + +A K P+R++PI +G +LI
Sbjct: 176 ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235
Query: 304 AALYVGVSLVLTGMVPYKFLDEDA-PLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXY 362
A YV + + GM+P L A P DA ++SF
Sbjct: 236 AVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTL 295
Query: 363 VQSXXXXXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGI 404
+ P IFA+V+ K TPV + VGI+ I
Sbjct: 296 LAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTI 336
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic
Length = 445
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 2/162 (1%)
Query: 244 EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLIC 303
E ++ W+ F I + V ++++G ++ + +A K P+R++PI +G +LI
Sbjct: 176 ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235
Query: 304 AALYVGVSLVLTGMVPYKFLDEDA-PLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXY 362
A YV + + GM+P L A P DA ++SF
Sbjct: 236 AVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTL 295
Query: 363 VQSXXXXXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGI 404
+ P IFA+V+ K TPV + VGI+ I
Sbjct: 296 LAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTI 336
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 92 PGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132
P VT +FL+ S+L A+CY +A AV G A LY+ T
Sbjct: 69 PAVTFAFLVGSQMSLLRAICYV-VAQLLGAVAGAAVLYSVT 108
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 92 PGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132
P VT +FL+ S+L A+CY +A AV G A LY+ T
Sbjct: 69 PAVTFAFLVGSQMSLLRAICYM-VAQLLGAVAGAAVLYSVT 108
>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJI|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
Length = 511
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 242 AFEVDVSNWSPFAPNGFKEILTGATVVFFA----YVGFDAVANSAEESKKPQRDLPIGIL 297
A E+D + P F ++ G VVF A Y+G +A A E P RD P+ +L
Sbjct: 186 AIEMDSKTFFP----DFSKV--GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239
Query: 298 GSLLICAAL 306
LL+ AA+
Sbjct: 240 --LLMVAAI 246
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 92 PGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132
P VT +FL+ S+L A+CY +A AV G A LY+ T
Sbjct: 65 PAVTFAFLVGSQMSLLRAICYV-VAQLLGAVAGAAVLYSVT 104
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 92 PGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132
P VT +FL+ S+L A+CY +A AV G A LY+ T
Sbjct: 63 PAVTFAFLVGSQMSLLRAICYV-VAQLLGAVAGAAVLYSVT 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,753,822
Number of Sequences: 62578
Number of extensions: 324059
Number of successful extensions: 574
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 15
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)